Query 004743
Match_columns 732
No_of_seqs 606 out of 3444
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 04:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.3E-86 1.1E-90 751.2 41.4 425 267-731 14-449 (501)
2 4g26_A Pentatricopeptide repea 100.0 4.7E-33 1.6E-37 315.3 23.0 217 167-470 7-223 (501)
3 2xpi_A Anaphase-promoting comp 99.9 5.2E-20 1.8E-24 211.6 27.0 336 149-510 151-569 (597)
4 2xpi_A Anaphase-promoting comp 99.9 2.4E-20 8.1E-25 214.4 23.1 320 147-511 83-461 (597)
5 3v33_A Ribonuclease ZC3H12A; r 99.8 3.6E-21 1.2E-25 187.8 6.2 122 604-731 24-157 (223)
6 3spa_A Mtrpol, DNA-directed RN 99.8 1.6E-20 5.5E-25 219.2 10.4 126 350-476 126-255 (1134)
7 3spa_A Mtrpol, DNA-directed RN 99.8 9.4E-21 3.2E-25 221.2 5.7 165 277-482 126-306 (1134)
8 3v32_B Ribonuclease ZC3H12A; r 99.8 2.5E-20 8.4E-25 178.2 6.5 123 603-731 23-157 (185)
9 1w3b_A UDP-N-acetylglucosamine 99.5 1.2E-12 4E-17 141.9 26.4 287 159-486 76-368 (388)
10 1w3b_A UDP-N-acetylglucosamine 99.5 8.2E-12 2.8E-16 135.3 29.7 307 161-510 10-324 (388)
11 2y4t_A DNAJ homolog subfamily 99.4 1.8E-11 6E-16 134.9 27.3 292 159-486 35-358 (450)
12 2y4t_A DNAJ homolog subfamily 99.4 9.4E-11 3.2E-15 129.0 28.0 246 189-486 24-286 (450)
13 1b89_A Protein (clathrin heavy 99.3 5.6E-12 1.9E-16 137.7 8.7 223 161-486 14-236 (449)
14 3cv0_A Peroxisome targeting si 99.3 1.8E-09 6.3E-14 112.6 27.5 256 160-483 31-312 (327)
15 3hym_B Cell division cycle pro 99.2 1.7E-09 5.8E-14 113.0 26.1 259 160-486 32-299 (330)
16 1fch_A Peroxisomal targeting s 99.2 1.4E-09 4.8E-14 116.0 25.3 257 159-481 73-354 (368)
17 2gw1_A Mitochondrial precursor 99.2 2.1E-09 7.1E-14 120.0 27.0 294 160-511 16-392 (514)
18 4eqf_A PEX5-related protein; a 99.2 9.6E-10 3.3E-14 117.7 23.3 258 159-482 74-352 (365)
19 4eqf_A PEX5-related protein; a 99.2 5.1E-10 1.7E-14 119.8 20.1 246 190-486 64-310 (365)
20 1fch_A Peroxisomal targeting s 99.2 4.2E-09 1.4E-13 112.3 24.6 274 164-486 39-314 (368)
21 2gw1_A Mitochondrial precursor 99.1 4.2E-09 1.4E-13 117.5 23.8 268 162-493 201-483 (514)
22 3cv0_A Peroxisome targeting si 99.1 1.1E-08 3.7E-13 106.7 24.9 246 192-486 22-269 (327)
23 1b89_A Protein (clathrin heavy 99.1 8.5E-11 2.9E-15 128.4 8.2 211 203-510 15-226 (449)
24 3hym_B Cell division cycle pro 99.1 8E-09 2.7E-13 107.8 22.9 234 192-486 23-265 (330)
25 3mkr_A Coatomer subunit epsilo 99.1 5.6E-09 1.9E-13 109.3 21.0 217 200-486 8-229 (291)
26 3ieg_A DNAJ homolog subfamily 99.1 5.4E-08 1.9E-12 102.4 28.5 256 160-486 13-301 (359)
27 3mkr_A Coatomer subunit epsilo 99.0 1E-08 3.4E-13 107.3 20.5 221 195-486 38-264 (291)
28 3uq3_A Heat shock protein STI1 99.0 1.9E-08 6.7E-13 100.8 19.2 225 192-486 6-236 (258)
29 3ieg_A DNAJ homolog subfamily 99.0 2.3E-07 7.7E-12 97.6 28.0 257 159-486 46-335 (359)
30 3fp2_A TPR repeat-containing p 98.9 1.4E-07 4.9E-12 105.8 26.6 292 159-485 34-406 (537)
31 2vq2_A PILW, putative fimbrial 98.9 9.1E-08 3.1E-12 93.7 20.9 202 190-486 7-211 (225)
32 2ho1_A Type 4 fimbrial biogene 98.9 8.1E-08 2.8E-12 96.6 20.9 200 191-486 37-238 (252)
33 2ho1_A Type 4 fimbrial biogene 98.9 1.4E-07 4.7E-12 94.8 21.2 179 294-511 47-229 (252)
34 3fp2_A TPR repeat-containing p 98.9 2.2E-07 7.6E-12 104.3 25.1 256 164-486 216-491 (537)
35 2vq2_A PILW, putative fimbrial 98.8 1.9E-07 6.5E-12 91.4 20.2 156 294-486 18-176 (225)
36 1xnf_A Lipoprotein NLPI; TPR, 98.8 4.9E-08 1.7E-12 99.2 13.5 85 162-260 17-101 (275)
37 2q7f_A YRRB protein; TPR, prot 98.7 2.1E-07 7.3E-12 92.5 16.5 188 248-486 35-222 (243)
38 3uq3_A Heat shock protein STI1 98.7 6.2E-07 2.1E-11 89.7 19.8 216 160-451 15-236 (258)
39 2q7f_A YRRB protein; TPR, prot 98.7 1.6E-07 5.6E-12 93.3 14.5 203 189-452 21-223 (243)
40 1xnf_A Lipoprotein NLPI; TPR, 98.7 1.6E-07 5.5E-12 95.3 14.7 222 203-486 17-244 (275)
41 3nf1_A KLC 1, kinesin light ch 98.7 6.6E-07 2.3E-11 92.2 19.2 246 189-485 25-306 (311)
42 1ouv_A Conserved hypothetical 98.7 1E-05 3.5E-10 82.5 27.5 226 191-486 6-251 (273)
43 2pl2_A Hypothetical conserved 98.6 6.5E-07 2.2E-11 88.8 17.2 200 223-484 2-212 (217)
44 2pl2_A Hypothetical conserved 98.6 8.2E-07 2.8E-11 88.1 15.8 199 189-449 3-212 (217)
45 2ond_A Cleavage stimulation fa 98.6 9.7E-06 3.3E-10 84.8 24.7 243 192-486 9-270 (308)
46 2fo7_A Synthetic consensus TPR 98.5 3.7E-06 1.3E-10 74.3 17.2 129 354-486 4-132 (136)
47 3u4t_A TPR repeat-containing p 98.5 2.9E-06 9.9E-11 85.9 18.2 233 193-486 5-250 (272)
48 3as5_A MAMA; tetratricopeptide 98.4 3.9E-06 1.3E-10 78.9 14.8 156 294-486 18-173 (186)
49 3ro2_A PINS homolog, G-protein 98.4 2E-06 6.7E-11 89.1 13.7 274 159-486 14-332 (338)
50 2h6f_A Protein farnesyltransfe 98.4 2.2E-05 7.5E-10 85.2 21.9 228 192-483 98-344 (382)
51 2ooe_A Cleavage stimulation fa 98.4 2.4E-05 8.1E-10 88.4 22.8 127 161-312 23-158 (530)
52 2ond_A Cleavage stimulation fa 98.3 2.3E-05 8E-10 81.8 20.4 219 167-451 33-270 (308)
53 3sf4_A G-protein-signaling mod 98.3 3.5E-06 1.2E-10 90.3 14.3 273 159-485 18-335 (406)
54 3u4t_A TPR repeat-containing p 98.3 1.3E-05 4.3E-10 81.2 17.0 227 160-452 13-251 (272)
55 4a1s_A PINS, partner of inscut 98.3 1.5E-06 5E-11 94.1 10.4 274 159-486 57-372 (411)
56 1ouv_A Conserved hypothetical 98.3 7.2E-05 2.5E-09 76.1 21.4 216 161-452 17-252 (273)
57 2ooe_A Cleavage stimulation fa 98.3 0.00015 5.1E-09 81.8 25.7 271 163-486 191-492 (530)
58 3nf1_A KLC 1, kinesin light ch 98.2 2E-05 6.8E-10 81.0 16.0 241 159-450 36-306 (311)
59 1xi4_A Clathrin heavy chain; a 98.2 5.9E-05 2E-09 91.8 22.0 249 160-484 1059-1307(1630)
60 3edt_B KLC 2, kinesin light ch 98.2 9.6E-06 3.3E-10 81.9 13.3 234 202-485 12-280 (283)
61 3edt_B KLC 2, kinesin light ch 98.2 1.2E-05 4.2E-10 81.0 13.5 239 162-450 13-280 (283)
62 3as5_A MAMA; tetratricopeptide 98.2 9.5E-05 3.2E-09 69.1 18.7 149 358-511 14-164 (186)
63 3vtx_A MAMA; tetratricopeptide 98.2 9E-05 3.1E-09 70.3 18.7 163 281-486 8-170 (184)
64 3ro2_A PINS homolog, G-protein 98.2 1.4E-05 4.9E-10 82.5 14.0 245 192-486 6-292 (338)
65 4a1s_A PINS, partner of inscut 98.2 1.4E-05 4.8E-10 86.2 14.1 245 192-486 49-332 (411)
66 3sf4_A G-protein-signaling mod 98.2 2.1E-05 7.2E-10 84.1 15.1 249 188-486 6-296 (406)
67 2fo7_A Synthetic consensus TPR 98.1 2.5E-05 8.7E-10 68.7 12.6 122 294-451 11-132 (136)
68 4abn_A Tetratricopeptide repea 98.1 2.9E-05 1E-09 86.7 16.0 213 207-483 84-318 (474)
69 2h6f_A Protein farnesyltransfe 98.1 0.00015 5.3E-09 78.5 20.6 238 159-467 106-363 (382)
70 2xm6_A Protein corresponding t 98.0 0.0023 8E-08 71.1 29.4 274 163-486 92-396 (490)
71 2xm6_A Protein corresponding t 98.0 0.0018 6.3E-08 72.0 28.1 278 163-491 128-435 (490)
72 3vtx_A MAMA; tetratricopeptide 98.0 0.00068 2.3E-08 64.1 21.1 156 350-511 4-161 (184)
73 3ulq_A Response regulator aspa 98.0 8.5E-05 2.9E-09 79.8 15.7 236 198-485 110-367 (383)
74 1hz4_A MALT regulatory protein 97.9 0.00092 3.1E-08 71.1 21.8 272 161-485 25-321 (373)
75 1hz4_A MALT regulatory protein 97.9 0.0013 4.3E-08 70.0 22.0 239 199-486 22-282 (373)
76 1xi4_A Clathrin heavy chain; a 97.8 0.0022 7.4E-08 78.5 25.4 246 162-481 1088-1340(1630)
77 4abn_A Tetratricopeptide repea 97.8 0.00057 2E-08 76.1 18.7 163 279-486 103-287 (474)
78 1qqe_A Vesicular transport pro 97.8 0.00081 2.8E-08 69.5 18.5 125 358-484 123-267 (292)
79 4gyw_A UDP-N-acetylglucosamine 97.7 0.00065 2.2E-08 79.8 18.4 160 281-485 12-173 (723)
80 1na0_A Designed protein CTPR3; 97.7 0.001 3.5E-08 57.4 15.4 91 358-450 15-105 (125)
81 3q15_A PSP28, response regulat 97.7 0.00063 2.1E-08 72.9 15.8 234 200-485 110-364 (378)
82 1hh8_A P67PHOX, NCF-2, neutrop 97.6 0.0014 4.9E-08 63.2 16.9 128 358-492 12-154 (213)
83 4i17_A Hypothetical protein; T 97.6 0.0052 1.8E-07 60.1 21.1 131 351-486 7-146 (228)
84 2ifu_A Gamma-SNAP; membrane fu 97.6 0.0019 6.7E-08 67.1 18.7 117 358-479 122-254 (307)
85 4i17_A Hypothetical protein; T 97.6 0.0026 8.9E-08 62.4 18.3 142 294-473 17-169 (228)
86 4g1t_A Interferon-induced prot 97.6 0.0062 2.1E-07 66.6 22.7 274 191-493 51-368 (472)
87 4g1t_A Interferon-induced prot 97.6 0.0043 1.5E-07 67.9 21.1 300 161-486 62-401 (472)
88 1a17_A Serine/threonine protei 97.6 0.0027 9.2E-08 58.2 16.5 128 354-485 16-145 (166)
89 3mv2_B Coatomer subunit epsilo 97.5 0.0047 1.6E-07 64.4 19.6 128 357-492 141-286 (310)
90 3mv2_B Coatomer subunit epsilo 97.5 0.0015 5.1E-08 68.2 15.3 124 358-485 106-239 (310)
91 1na0_A Designed protein CTPR3; 97.5 0.0035 1.2E-07 53.9 15.6 98 387-486 9-106 (125)
92 2vsy_A XCC0866; transferase, g 97.4 0.0022 7.7E-08 72.8 17.3 130 353-486 25-157 (568)
93 4gyw_A UDP-N-acetylglucosamine 97.4 0.0042 1.5E-07 72.8 19.7 131 351-486 9-140 (723)
94 2vyi_A SGTA protein; chaperone 97.4 0.0039 1.3E-07 54.1 14.8 112 358-472 18-129 (131)
95 3ulq_A Response regulator aspa 97.3 0.0011 3.6E-08 71.1 12.2 234 160-450 113-367 (383)
96 3qky_A Outer membrane assembly 97.3 0.0042 1.4E-07 62.4 16.0 162 294-492 25-228 (261)
97 2lni_A Stress-induced-phosphop 97.3 0.0041 1.4E-07 54.5 13.8 97 352-451 17-113 (133)
98 3u3w_A Transcriptional activat 97.2 0.013 4.3E-07 60.2 18.7 163 294-485 85-265 (293)
99 3urz_A Uncharacterized protein 97.2 0.0079 2.7E-07 58.5 16.1 176 294-496 14-194 (208)
100 2e2e_A Formate-dependent nitri 97.2 0.0042 1.4E-07 58.3 13.1 122 362-486 20-144 (177)
101 2yhc_A BAMD, UPF0169 lipoprote 97.1 0.011 3.7E-07 58.1 16.5 158 294-486 14-213 (225)
102 2ifu_A Gamma-SNAP; membrane fu 97.1 0.0084 2.9E-07 62.2 16.1 203 204-484 4-222 (307)
103 3q15_A PSP28, response regulat 97.1 0.004 1.4E-07 66.5 13.3 234 160-450 111-364 (378)
104 1qqe_A Vesicular transport pro 97.1 0.0028 9.5E-08 65.4 11.6 164 294-486 47-228 (292)
105 2kck_A TPR repeat; tetratricop 97.1 0.0048 1.6E-07 52.1 11.2 94 391-486 10-106 (112)
106 1elw_A TPR1-domain of HOP; HOP 97.0 0.019 6.5E-07 48.6 15.1 97 388-486 5-101 (118)
107 2r5s_A Uncharacterized protein 97.0 0.0038 1.3E-07 58.8 11.2 124 358-485 46-172 (176)
108 1elr_A TPR2A-domain of HOP; HO 97.0 0.011 3.7E-07 51.3 13.4 97 389-486 6-108 (131)
109 1p5q_A FKBP52, FK506-binding p 97.0 0.013 4.3E-07 61.9 16.0 130 353-485 149-293 (336)
110 1hh8_A P67PHOX, NCF-2, neutrop 97.0 0.012 4.1E-07 56.6 14.6 121 294-452 16-151 (213)
111 1elw_A TPR1-domain of HOP; HOP 97.0 0.025 8.7E-07 47.8 15.2 97 353-452 6-102 (118)
112 2lni_A Stress-induced-phosphop 97.0 0.016 5.4E-07 50.5 14.1 101 384-486 13-113 (133)
113 2qfc_A PLCR protein; TPR, HTH, 97.0 0.022 7.4E-07 58.4 17.2 163 294-484 85-264 (293)
114 3gw4_A Uncharacterized protein 96.9 0.0072 2.5E-07 57.4 12.5 129 358-486 32-176 (203)
115 1elr_A TPR2A-domain of HOP; HO 96.9 0.0081 2.8E-07 52.1 11.9 110 353-466 6-121 (131)
116 4e6h_A MRNA 3'-END-processing 96.9 0.052 1.8E-06 63.0 21.6 138 358-499 440-581 (679)
117 2vyi_A SGTA protein; chaperone 96.9 0.026 8.9E-07 48.7 14.9 99 386-486 11-109 (131)
118 2kck_A TPR repeat; tetratricop 96.9 0.013 4.3E-07 49.3 12.4 97 353-452 8-107 (112)
119 3qou_A Protein YBBN; thioredox 96.9 0.0077 2.6E-07 62.0 13.0 125 358-486 123-248 (287)
120 2vsy_A XCC0866; transferase, g 96.8 0.018 6.3E-07 65.1 17.0 119 365-486 2-120 (568)
121 2pzi_A Probable serine/threoni 96.8 0.014 4.6E-07 68.1 16.0 124 358-486 439-563 (681)
122 3qou_A Protein YBBN; thioredox 96.8 0.058 2E-06 55.2 19.2 166 190-449 116-282 (287)
123 3qky_A Outer membrane assembly 96.8 0.066 2.3E-06 53.4 19.0 129 358-491 21-180 (261)
124 4ga2_A E3 SUMO-protein ligase 96.8 0.0059 2E-07 56.2 10.1 120 362-486 7-129 (150)
125 3q49_B STIP1 homology and U bo 96.8 0.031 1.1E-06 49.3 14.5 100 385-486 7-106 (137)
126 3gyz_A Chaperone protein IPGC; 96.7 0.03 1E-06 51.8 14.5 91 358-450 42-132 (151)
127 2yhc_A BAMD, UPF0169 lipoprote 96.7 0.12 4E-06 50.6 19.4 88 361-452 105-214 (225)
128 4ga2_A E3 SUMO-protein ligase 96.7 0.0094 3.2E-07 54.7 10.6 110 358-472 37-149 (150)
129 3gyz_A Chaperone protein IPGC; 96.7 0.022 7.4E-07 52.7 13.0 123 358-493 15-138 (151)
130 2dba_A Smooth muscle cell asso 96.6 0.055 1.9E-06 48.0 15.5 90 358-450 34-127 (148)
131 2qfc_A PLCR protein; TPR, HTH, 96.6 0.13 4.6E-06 52.3 20.3 96 353-449 157-264 (293)
132 4gco_A Protein STI-1; structur 96.6 0.034 1.2E-06 49.3 13.8 89 360-450 21-109 (126)
133 2dba_A Smooth muscle cell asso 96.6 0.063 2.2E-06 47.6 15.7 111 385-500 26-141 (148)
134 4gco_A Protein STI-1; structur 96.6 0.048 1.6E-06 48.3 14.6 96 389-486 15-110 (126)
135 2xcb_A PCRH, regulatory protei 96.6 0.028 9.5E-07 50.7 13.2 89 359-449 25-113 (142)
136 1a17_A Serine/threonine protei 96.6 0.07 2.4E-06 48.4 16.1 97 388-486 14-110 (166)
137 3q49_B STIP1 homology and U bo 96.6 0.038 1.3E-06 48.7 13.8 98 351-451 9-106 (137)
138 3ro3_A PINS homolog, G-protein 96.6 0.012 4E-07 53.0 10.5 131 354-485 12-157 (164)
139 3u3w_A Transcriptional activat 96.6 0.025 8.4E-07 58.0 14.1 128 358-485 81-224 (293)
140 2vgx_A Chaperone SYCD; alterna 96.6 0.029 9.8E-07 51.3 13.2 87 360-448 29-115 (148)
141 2r5s_A Uncharacterized protein 96.5 0.053 1.8E-06 50.7 15.1 79 370-449 92-171 (176)
142 2e2e_A Formate-dependent nitri 96.5 0.021 7E-07 53.4 12.1 123 294-452 20-145 (177)
143 3upv_A Heat shock protein STI1 96.5 0.041 1.4E-06 48.0 13.0 96 389-486 6-101 (126)
144 3sz7_A HSC70 cochaperone (SGT) 96.5 0.038 1.3E-06 50.9 13.4 97 388-486 12-108 (164)
145 2vgx_A Chaperone SYCD; alterna 96.4 0.039 1.3E-06 50.4 12.9 99 386-486 20-118 (148)
146 3upv_A Heat shock protein STI1 96.4 0.049 1.7E-06 47.5 13.1 92 358-451 10-101 (126)
147 2xcb_A PCRH, regulatory protei 96.4 0.043 1.5E-06 49.4 12.9 97 388-486 19-115 (142)
148 3sz7_A HSC70 cochaperone (SGT) 96.3 0.043 1.5E-06 50.6 13.1 97 352-451 12-108 (164)
149 2fbn_A 70 kDa peptidylprolyl i 96.3 0.059 2E-06 51.4 14.4 118 358-477 44-176 (198)
150 3rjv_A Putative SEL1 repeat pr 96.2 0.14 4.9E-06 49.6 16.7 115 367-486 68-197 (212)
151 4f3v_A ESX-1 secretion system 96.2 0.044 1.5E-06 56.2 13.1 129 358-491 108-240 (282)
152 2pzi_A Probable serine/threoni 96.2 0.015 5E-07 67.8 10.7 172 248-472 403-583 (681)
153 4gcn_A Protein STI-1; structur 96.2 0.093 3.2E-06 46.4 13.7 54 360-414 16-69 (127)
154 3rjv_A Putative SEL1 repeat pr 96.2 0.27 9.1E-06 47.6 18.2 122 358-486 24-158 (212)
155 3e4b_A ALGK; tetratricopeptide 96.1 0.07 2.4E-06 58.6 15.5 122 353-484 178-314 (452)
156 2xev_A YBGF; tetratricopeptide 96.1 0.15 5E-06 44.2 14.8 89 394-486 9-105 (129)
157 3dra_A Protein farnesyltransfe 96.1 0.54 1.8E-05 48.8 21.3 232 204-497 46-298 (306)
158 3urz_A Uncharacterized protein 96.1 0.12 4E-06 49.9 15.1 120 360-483 12-150 (208)
159 3gw4_A Uncharacterized protein 96.1 0.036 1.2E-06 52.4 11.1 122 363-485 3-135 (203)
160 3k9i_A BH0479 protein; putativ 95.8 0.017 5.9E-07 50.1 6.8 86 365-451 3-90 (117)
161 4gcn_A Protein STI-1; structur 95.8 0.13 4.5E-06 45.3 12.8 109 388-499 9-123 (127)
162 4b4t_Q 26S proteasome regulato 95.7 0.56 1.9E-05 50.1 20.3 209 159-450 13-244 (434)
163 1hxi_A PEX5, peroxisome target 95.7 0.1 3.5E-06 45.7 11.5 90 358-450 23-113 (121)
164 1wao_1 Serine/threonine protei 95.6 0.032 1.1E-06 61.9 9.9 120 360-481 14-134 (477)
165 2xev_A YBGF; tetratricopeptide 95.5 0.26 8.9E-06 42.6 13.7 96 358-458 8-110 (129)
166 4f3v_A ESX-1 secretion system 95.5 0.067 2.3E-06 54.8 11.0 125 294-456 112-240 (282)
167 1hxi_A PEX5, peroxisome target 95.5 0.073 2.5E-06 46.7 9.9 94 390-486 20-114 (121)
168 3e4b_A ALGK; tetratricopeptide 95.4 0.14 4.7E-06 56.3 13.9 109 366-486 231-351 (452)
169 3k9i_A BH0479 protein; putativ 95.4 0.029 9.9E-07 48.7 6.7 87 399-486 2-90 (117)
170 4b4t_Q 26S proteasome regulato 95.3 0.87 3E-05 48.5 19.9 123 363-485 106-244 (434)
171 3n71_A Histone lysine methyltr 95.2 0.058 2E-06 60.1 10.2 126 361-486 318-464 (490)
172 2c2l_A CHIP, carboxy terminus 95.1 0.26 8.8E-06 50.2 14.1 95 352-450 5-100 (281)
173 1p5q_A FKBP52, FK506-binding p 95.0 0.35 1.2E-05 50.6 15.3 97 387-486 147-259 (336)
174 2fbn_A 70 kDa peptidylprolyl i 95.0 0.57 1.9E-05 44.3 15.5 99 387-486 38-151 (198)
175 1kt0_A FKBP51, 51 kDa FK506-bi 95.0 0.22 7.4E-06 54.8 14.0 127 353-483 270-412 (457)
176 3dra_A Protein farnesyltransfe 94.7 1.7 5.9E-05 44.9 19.2 225 162-450 45-286 (306)
177 2c2l_A CHIP, carboxy terminus 94.7 0.31 1.1E-05 49.5 13.3 98 386-486 3-101 (281)
178 4e6h_A MRNA 3'-END-processing 94.6 0.26 8.7E-06 57.2 13.6 136 349-486 375-533 (679)
179 1klx_A Cysteine rich protein B 94.5 0.57 1.9E-05 42.0 13.2 112 364-486 7-126 (138)
180 1ihg_A Cyclophilin 40; ppiase 94.5 0.29 9.8E-06 52.3 12.9 91 358-450 229-335 (370)
181 1wao_1 Serine/threonine protei 94.3 0.18 6.1E-06 55.9 11.1 116 294-446 16-134 (477)
182 3q7a_A Farnesyltransferase alp 94.1 2.8 9.7E-05 44.1 19.3 233 204-497 67-342 (349)
183 2kat_A Uncharacterized protein 93.9 0.28 9.6E-06 41.8 9.5 77 371-449 4-80 (115)
184 3rkv_A Putative peptidylprolyl 93.7 0.43 1.5E-05 43.5 11.0 23 358-380 17-39 (162)
185 3ro3_A PINS homolog, G-protein 93.5 0.31 1.1E-05 43.1 9.4 99 388-486 10-118 (164)
186 3rkv_A Putative peptidylprolyl 93.5 1.9 6.6E-05 38.9 15.0 98 388-486 12-126 (162)
187 2if4_A ATFKBP42; FKBP-like, al 93.4 0.18 6.3E-06 52.9 8.8 124 358-486 185-328 (338)
188 1na3_A Designed protein CTPR2; 93.3 0.87 3E-05 36.2 10.9 61 389-450 11-71 (91)
189 2uy1_A Cleavage stimulation fa 93.0 1.3 4.6E-05 49.0 15.5 175 294-485 223-412 (493)
190 2l6j_A TPR repeat-containing p 92.9 0.39 1.3E-05 40.0 8.5 62 388-450 5-66 (111)
191 2kat_A Uncharacterized protein 92.5 0.64 2.2E-05 39.5 9.5 80 405-486 3-82 (115)
192 3n71_A Histone lysine methyltr 92.5 0.38 1.3E-05 53.4 10.0 99 352-451 352-464 (490)
193 2l6j_A TPR repeat-containing p 92.4 0.47 1.6E-05 39.5 8.3 67 351-421 4-70 (111)
194 1kt0_A FKBP51, 51 kDa FK506-bi 92.2 1.8 6.3E-05 47.2 15.0 97 387-486 268-380 (457)
195 1ihg_A Cyclophilin 40; ppiase 92.1 1.7 5.7E-05 46.2 14.2 97 389-486 225-336 (370)
196 1na3_A Designed protein CTPR2; 91.9 1.4 4.7E-05 35.0 10.5 76 353-432 11-87 (91)
197 3q7a_A Farnesyltransferase alp 91.2 14 0.00048 38.7 19.8 225 160-451 64-331 (349)
198 1klx_A Cysteine rich protein B 90.8 4.6 0.00016 35.8 13.7 116 294-453 5-128 (138)
199 2hr2_A Hypothetical protein; a 90.7 4 0.00014 37.7 13.3 106 358-463 17-148 (159)
200 3ma5_A Tetratricopeptide repea 90.7 1.3 4.6E-05 36.7 9.4 62 386-448 6-67 (100)
201 3ly7_A Transcriptional activat 90.7 4.7 0.00016 42.6 15.4 147 348-501 191-352 (372)
202 3ma5_A Tetratricopeptide repea 89.8 1.3 4.3E-05 36.8 8.4 62 352-415 8-69 (100)
203 3qww_A SET and MYND domain-con 89.5 1.7 5.8E-05 47.3 11.3 83 401-483 312-408 (433)
204 3qwp_A SET and MYND domain-con 89.3 1.2 4E-05 48.6 9.8 84 399-482 299-396 (429)
205 2if4_A ATFKBP42; FKBP-like, al 89.1 1.6 5.5E-05 45.5 10.5 95 389-486 181-293 (338)
206 3mkq_A Coatomer beta'-subunit; 88.9 4.4 0.00015 47.1 15.1 77 353-445 683-759 (814)
207 2uy1_A Cleavage stimulation fa 88.8 13 0.00046 40.8 18.2 210 169-450 198-412 (493)
208 2hr2_A Hypothetical protein; a 88.7 5.1 0.00017 37.0 12.3 94 390-485 14-130 (159)
209 3qwp_A SET and MYND domain-con 88.7 1 3.6E-05 48.9 8.9 92 358-449 293-398 (429)
210 3qww_A SET and MYND domain-con 87.9 1.7 5.8E-05 47.3 9.9 86 364-449 310-409 (433)
211 3mkq_B Coatomer subunit alpha; 87.5 5.9 0.0002 37.2 11.9 102 361-483 14-115 (177)
212 3mkq_A Coatomer beta'-subunit; 85.2 3.4 0.00012 48.0 11.4 101 363-484 663-763 (814)
213 2kc7_A BFR218_protein; tetratr 85.0 4.1 0.00014 33.0 8.7 56 360-416 8-64 (99)
214 2kc7_A BFR218_protein; tetratr 84.7 3 0.0001 33.8 7.8 56 395-451 8-64 (99)
215 3dss_A Geranylgeranyl transfer 80.9 50 0.0017 34.1 17.0 228 200-486 38-304 (331)
216 1zu2_A Mitochondrial import re 77.7 7 0.00024 36.0 8.1 95 362-461 12-128 (158)
217 1dce_A Protein (RAB geranylger 76.7 63 0.0021 36.1 17.4 132 368-504 89-238 (567)
218 1pc2_A Mitochondria fission pr 76.3 17 0.00058 33.2 10.2 47 369-416 15-64 (152)
219 1wy6_A Hypothetical protein ST 75.9 45 0.0015 30.0 14.3 122 365-492 20-158 (172)
220 3u64_A Protein TP_0956; tetrat 74.0 35 0.0012 34.7 12.7 121 352-484 155-296 (301)
221 1pc2_A Mitochondria fission pr 72.0 33 0.0011 31.2 10.9 82 403-486 14-100 (152)
222 2ff4_A Probable regulatory pro 72.0 14 0.00048 39.2 10.0 69 390-459 174-247 (388)
223 4gns_B Protein CSD3, chitin bi 70.9 53 0.0018 38.0 15.0 125 358-484 254-398 (754)
224 3ly7_A Transcriptional activat 69.8 18 0.00061 38.2 9.9 74 384-461 274-347 (372)
225 2y69_E Cytochrome C oxidase su 69.6 26 0.0009 31.2 9.1 72 358-430 58-130 (152)
226 1v54_E Cytochrome C oxidase po 68.9 41 0.0014 28.4 9.7 71 359-430 16-87 (109)
227 2ff4_A Probable regulatory pro 66.7 14 0.00048 39.2 8.6 66 358-424 177-247 (388)
228 3bee_A Putative YFRE protein; 66.1 36 0.0012 27.8 9.2 21 430-450 51-71 (93)
229 3mkq_B Coatomer subunit alpha; 65.7 67 0.0023 30.0 11.9 80 352-447 35-114 (177)
230 1k1a_A B-cell lymphoma 3-encod 65.2 5 0.00017 38.6 4.3 29 294-322 16-44 (241)
231 2v5f_A Prolyl 4-hydroxylase su 65.2 36 0.0012 28.1 9.3 21 392-412 10-30 (104)
232 1wdy_A 2-5A-dependent ribonucl 64.7 11 0.00039 36.9 7.0 42 399-440 191-234 (285)
233 1k1a_A B-cell lymphoma 3-encod 63.2 19 0.00064 34.4 8.1 30 196-225 11-40 (241)
234 1zu2_A Mitochondrial import re 63.0 27 0.00094 32.0 8.6 95 398-497 13-129 (158)
235 3bee_A Putative YFRE protein; 60.3 67 0.0023 26.0 10.0 68 421-491 5-75 (93)
236 1dce_A Protein (RAB geranylger 59.5 1.4E+02 0.0048 33.2 15.5 128 364-496 41-182 (567)
237 1nzn_A CGI-135 protein, fissio 57.7 50 0.0017 29.0 8.9 89 360-451 9-103 (126)
238 2v5f_A Prolyl 4-hydroxylase su 57.4 78 0.0027 25.9 10.2 62 425-486 8-75 (104)
239 4h7y_A Dual specificity protei 56.1 47 0.0016 30.3 8.5 59 436-497 74-133 (161)
240 1wy6_A Hypothetical protein ST 52.9 63 0.0021 29.0 8.5 60 358-418 97-156 (172)
241 1v54_E Cytochrome C oxidase po 51.9 44 0.0015 28.3 7.0 48 439-486 27-74 (109)
242 4h7y_A Dual specificity protei 51.4 1.4E+02 0.0049 27.1 12.1 104 350-456 12-128 (161)
243 3dss_A Geranylgeranyl transfer 49.4 2.3E+02 0.008 29.0 17.3 131 368-503 90-238 (331)
244 3u64_A Protein TP_0956; tetrat 47.3 1.1E+02 0.0039 31.0 10.7 84 404-491 180-272 (301)
245 1wdy_A 2-5A-dependent ribonucl 45.7 29 0.00099 33.8 6.2 84 393-481 151-240 (285)
246 4fhn_B Nucleoporin NUP120; pro 44.8 2E+02 0.0069 34.9 14.7 142 358-507 818-987 (1139)
247 3b7b_A Euchromatic histone-lys 40.9 32 0.0011 32.7 5.5 116 359-486 115-236 (237)
248 3jxi_A Vanilloid receptor-rela 40.4 28 0.00096 33.7 5.1 119 358-486 96-251 (260)
249 2d2s_A Exocyst complex compone 38.0 1.6E+02 0.0055 28.6 10.1 31 454-484 88-118 (235)
250 3aji_A 26S proteasome non-ATPa 37.7 38 0.0013 32.0 5.4 110 358-480 43-159 (231)
251 2d2s_A Exocyst complex compone 36.1 3.1E+02 0.011 26.6 13.1 139 358-505 24-179 (235)
252 2nsz_A Programmed cell death p 35.6 1.2E+02 0.004 26.5 7.8 65 390-455 10-76 (129)
253 2y69_E Cytochrome C oxidase su 35.1 1E+02 0.0035 27.5 7.0 46 441-486 72-117 (152)
254 3kea_A K1L; tropism, ANK repea 34.0 1.3E+02 0.0045 29.6 9.1 110 358-481 132-242 (285)
255 3ix7_A Uncharacterized protein 32.6 52 0.0018 29.2 4.9 50 663-712 61-113 (134)
256 4b4t_R RPN7, 26S proteasome re 31.5 3E+02 0.01 29.2 11.9 102 358-461 137-247 (429)
257 3t8k_A Uncharacterized protein 30.8 97 0.0033 28.6 6.9 28 294-321 45-72 (186)
258 1nzn_A CGI-135 protein, fissio 30.6 2.5E+02 0.0085 24.5 8.9 84 401-486 15-103 (126)
259 2pnn_A Transient receptor pote 29.5 63 0.0022 31.5 5.7 190 195-482 14-255 (273)
260 3twr_A Tankyrase-2; ankyrin re 28.8 46 0.0016 29.5 4.1 112 358-480 11-128 (165)
261 2ion_A PDCD4, programmed cell 28.6 1.1E+02 0.0037 27.7 6.5 64 390-454 12-77 (152)
262 3ljn_A Hypothetical protein; a 28.1 66 0.0023 32.9 5.7 214 195-482 21-266 (364)
263 4b4t_P 26S proteasome regulato 27.3 5.8E+02 0.02 27.0 15.8 200 164-414 30-245 (445)
264 3jxi_A Vanilloid receptor-rela 26.9 30 0.001 33.5 2.7 119 358-481 8-161 (260)
265 2nsz_A Programmed cell death p 26.8 2.3E+02 0.0077 24.6 8.1 61 358-419 13-75 (129)
266 4b4t_R RPN7, 26S proteasome re 26.5 3E+02 0.01 29.1 10.8 96 389-486 133-237 (429)
267 2p58_C Putative type III secre 25.8 2.2E+02 0.0074 24.0 7.0 50 397-452 50-99 (116)
268 3hra_A Ankyrin repeat family p 24.9 1E+02 0.0036 27.9 6.0 36 442-477 158-195 (201)
269 4gns_B Protein CSD3, chitin bi 24.7 6.3E+02 0.022 29.1 13.5 51 361-413 346-397 (754)
270 3rjo_A Endoplasmic reticulum a 24.1 4.4E+02 0.015 27.7 11.5 107 391-504 201-314 (419)
271 3utm_A Tankyrase-1; tankyrase, 24.0 5.1E+02 0.018 25.3 12.5 215 195-481 25-301 (351)
272 3d9h_A CDNA FLJ77766, highly s 23.3 44 0.0015 33.1 3.1 218 195-456 16-249 (285)
273 4b4t_P 26S proteasome regulato 23.2 6.8E+02 0.023 26.4 18.1 198 205-449 30-245 (445)
274 2uwj_G Type III export protein 23.2 2.1E+02 0.0072 24.1 6.5 50 397-452 49-98 (115)
275 1zbp_A Hypothetical protein VP 22.7 1.9E+02 0.0065 28.9 7.4 115 361-486 6-129 (273)
276 4fhn_B Nucleoporin NUP120; pro 22.6 4.1E+02 0.014 32.2 12.2 114 360-476 850-990 (1139)
277 4b93_B Ankyrin repeat domain-c 22.3 2.5E+02 0.0085 27.3 8.6 77 396-481 125-206 (269)
278 3twr_A Tankyrase-2; ankyrin re 22.0 1.3E+02 0.0044 26.4 5.8 88 358-457 45-136 (165)
279 2ion_A PDCD4, programmed cell 21.5 2.2E+02 0.0075 25.6 7.2 60 358-418 15-76 (152)
280 3kea_A K1L; tropism, ANK repea 21.5 83 0.0028 31.1 4.8 112 358-482 65-183 (285)
281 2rfa_A Transient receptor pote 21.4 2.6E+02 0.0088 25.9 8.2 118 358-484 78-221 (232)
282 2p58_C Putative type III secre 20.8 3E+02 0.01 23.1 7.0 77 402-486 22-98 (116)
283 3f6q_A Integrin-linked protein 20.7 1.2E+02 0.0041 27.1 5.4 112 360-480 10-125 (179)
284 3txn_A 26S proteasome regulato 20.2 3.2E+02 0.011 28.8 9.1 91 392-483 104-207 (394)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.3e-86 Score=751.19 Aligned_cols=425 Identities=49% Similarity=0.847 Sum_probs=400.3
Q ss_pred hhhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhc
Q 004743 267 TELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (732)
Q Consensus 267 ~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~ 344 (732)
+++.++ ++. |...++.+|++ ||+.|++++|.++|++|.+.|+.||.+|||
T Consensus 14 ~~~~~k-~~~~spe~~l~~~id~------c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn--------------------- 65 (501)
T 4g26_A 14 RKAKKK-AIQQSPEALLKQKLDM------CSKKGDVLEALRLYDEARRNGVQLSQYHYN--------------------- 65 (501)
T ss_dssp -----------CHHHHHHHHHHH------TTTSCCHHHHHHHHHHHHHHTCCCCHHHHH---------------------
T ss_pred HHHHHh-cccCCCHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHcCCCCCHhHHH---------------------
Confidence 345554 554 66779999999 999999999999999999999999888886
Q ss_pred cCCCCChhhhHHHHHHHHHhcc---------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004743 345 KDWSIDNQDADEIRLSEDAKKY---------AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (732)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g---------~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (732)
+ ||++|++.+ .+++|.++|++|...|+.||.+|||+||++|++.|++++|+++|++|.+
T Consensus 66 -----------~-Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 133 (501)
T 4g26_A 66 -----------V-LLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA 133 (501)
T ss_dssp -----------H-HHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------H-HHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4 666666544 4789999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHH
Q 004743 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (732)
Q Consensus 416 ~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~ 495 (732)
.|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||..||++||++|++.|++++|.++|++|++.+..|++.||
T Consensus 134 ~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 134 FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777888899
Q ss_pred HHHHHHHhchHHHHhccccchhHHHHHHHhhcCCCccccccCCCceeEEEEeeecCCCccCccccccccccCCHHHHHHH
Q 004743 496 DVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKF 575 (732)
Q Consensus 496 ~~I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~m~~~g~~p~~vt~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l 575 (732)
++|..||++......+...|+...+.+++...|+.|+.+.|.|...|.+..+.+...|.|.+|+..|+.++|+++|++.|
T Consensus 214 ~~l~~~F~s~~a~~~g~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~w~v~~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l 293 (501)
T 4g26_A 214 DMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETF 293 (501)
T ss_dssp HHHHHHHHSHHHHTCCBSCCCHHHHHHHHHHHTSSCCCSCCCBCSCEEEEEECBCTTSBBTTTCCBCCCCCCCHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhhhhhhhhhhhhHhccCcccccccccccCceeEEeeecccCCCccchhhhhccccCCHHHHHHH
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHhhcCCccccccccceecccCCCCChhhHHHHHHHHHhhCCCCCccEEEeccccccC
Q 004743 576 AESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITG 655 (732)
Q Consensus 576 ~~~i~~~a~~~~~~~~~~~F~~~l~~~~pyD~v~d~~nv~~~~~~~~~~~~i~~vv~~l~~~~~~~~~~l~~l~~~~~~~ 655 (732)
.+.|.++++.++++++|+.|++|+++++|||+||||+|||||++++|++.||..||+.+++..+.+++||||+|+||+.+
T Consensus 294 ~~~i~~~~~~~~~~~~~~~F~~~l~~~~p~d~vIDG~NV~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~l~~~~~~~ 373 (501)
T 4g26_A 294 AASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNG 373 (501)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTSCCCSEEEEHHHHHHTTCSSCCHHHHHHHHHHHHHHSTTCCCCEEEEEHHHHTS
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhcCCchhhhccchhhccccccccHHHHHHHHHHHHHHhhccCCcEEEeehhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999998
Q ss_pred CCCCChhhHHHHHHHHHcCceeeCCCCCCchHHHHHHHHhCCcEEEeCcccccccccccCCchhhhhhhccccccc
Q 004743 656 HKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQASVH 731 (732)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~DD~~~lyaa~~~~~~~vsnD~~RdH~~~l~~~~~f~rW~~~hq~~~~ 731 (732)
.....|.+++++++|++++.+|+||++||||||||||||+.+|+|||||+||||+|+|+++++|.|||++|||+|+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~t~~~s~DD~~~lyAal~~~~~~vsnD~mRdH~f~l~~~~~F~rW~~~hq~~~~ 449 (501)
T 4g26_A 374 GPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRIS 449 (501)
T ss_dssp GGGSSHHHHHHHHHHHHTTCEEEECTTCCHHHHHHHHHHHHTCEEECCCCCCSGGGGGGTTTHHHHHHHHHEEEEE
T ss_pred cccCCHHHHHHHHHHHhcCeEEeCCCCCCchHHHHHHHHccCCEEEeccccccchhccCCcHHHHHHHhcCeEEEE
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999999984
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.7e-33 Score=315.29 Aligned_cols=217 Identities=24% Similarity=0.282 Sum_probs=185.0
Q ss_pred chHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCccc
Q 004743 167 SGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246 (732)
Q Consensus 167 ~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~ 246 (732)
..++.+.+++.+++. ...|+ ..++.+|++|||.|++++|+++|++|++.|++||.+|||+||++|+..
T Consensus 7 s~~e~L~~~~~~k~~----~~spe-~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~------- 74 (501)
T 4g26_A 7 SPSENLSRKAKKKAI----QQSPE-ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA------- 74 (501)
T ss_dssp ---------------------CHH-HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC-------
T ss_pred chHHHHHHHHHHhcc----cCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC-------
Confidence 345566666644433 23455 678999999999999999999999999999999999999999999932
Q ss_pred CCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhh
Q 004743 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQ 326 (732)
Q Consensus 247 ~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~ 326 (732)
+.. . . .++.+.+++|.++|++|...|+.||.+||+
T Consensus 75 ---~~~------------------~---------------~------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn--- 109 (501)
T 4g26_A 75 ---EAA------------------T---------------E------SSPNPGLSRGFDIFKQMIVDKVVPNEATFT--- 109 (501)
T ss_dssp ---CCC------------------S---------------S------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHH---
T ss_pred ---Cch------------------h---------------h------hhhcchHHHHHHHHHHHHHhCCCCCHHHHH---
Confidence 211 0 1 456677899999999999998888888775
Q ss_pred hhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004743 327 LLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA 406 (732)
Q Consensus 327 li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A 406 (732)
+ ||++|++.|++++|.++|++|.+.|+.||..|||+||.+||+.|++++|
T Consensus 110 -----------------------------~-lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 110 -----------------------------N-GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp -----------------------------H-HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -----------------------------H-HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 6 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004743 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (732)
Q Consensus 407 ~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (732)
.++|++|.+.|+.||..||++||.+||+.|++++|.+++++|.+.|+.|+..||+.|+..|+..
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.85 E-value=5.2e-20 Score=211.58 Aligned_cols=336 Identities=10% Similarity=-0.067 Sum_probs=193.0
Q ss_pred hhhhhhhhhhhhhhhcCCchHHHHHHHHhhcC---------CCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004743 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKG---------SKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQR 219 (732)
Q Consensus 149 ~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g---------~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~ 219 (732)
..++.... ...+.++.++|.++|+++.... ...+.+.+++..+|+.++.+|.+.|++++|+++|++|.+
T Consensus 151 ~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 151 ACRYLAAF--CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp HHHHHHHH--HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444433 5668899999999998542111 000123456789999999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHhc----------------------------ccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 220 EGIKLGQYHYNVLLYLCSSA----------------------------AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 220 ~Gi~pd~~tyn~LL~~~~~~----------------------------~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
.+-. +...+..+...+... ......+.+.|++++|..+|. ++.+
T Consensus 229 ~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-------~~~~ 300 (597)
T 2xpi_A 229 VDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS-------SING 300 (597)
T ss_dssp HCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH-------TSTT
T ss_pred hCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH-------Hhhc
Confidence 6421 223333222111000 000112235667777777774 3333
Q ss_pred cCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccc---h------------------------
Q 004743 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL---N------------------------ 324 (732)
Q Consensus 272 ~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~---~------------------------ 324 (732)
. -.+..+|+.++.+ +.+.|++++|..+|++|.+.+- .+..+++ .
T Consensus 301 ~--~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 371 (597)
T 2xpi_A 301 L--EKSSDLLLCKADT------LFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371 (597)
T ss_dssp G--GGCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred C--CchHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc
Confidence 2 1256667777777 7777777777777777765541 1333333 0
Q ss_pred -----hhhhhccc-----cccCCCchhhhccCCCC-ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004743 325 -----SQLLDGRS-----NLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAV 393 (732)
Q Consensus 325 -----~~li~~~~-----~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~L 393 (732)
..+...+. +.|...|..+... .| +..+|+. ++.+|++.|++++|.++|++|...+ +.+..+|+.+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 447 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIG-FAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFL 447 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 02222222 3444455554432 22 3445555 6666666666666666666666543 3355666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHH
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE--EPELEALLRVS 467 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd--~~ty~~Li~~~ 467 (732)
+.+|.+.|++++|.++|++|.+.. +.+..+|+.+...|++.|++++|.++|++|.+. +..|+ ..+|..+..+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 666666666666666666665542 234566666666666666666666666666554 55666 56666666666
Q ss_pred HhcCChHHHHHHHHHHHhccCCC-ChhHHHH-HHHHHhchHHHHh
Q 004743 468 VEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARL 510 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M~~~~~~~-~p~t~~~-I~~~~~~~~~~~a 510 (732)
.+.|++++|.++|+++.+. .| .+.+|.. ...++..+...+|
T Consensus 527 ~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLL--STNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHH
Confidence 6666666666666666554 33 2234443 4444444444333
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.85 E-value=2.4e-20 Score=214.42 Aligned_cols=320 Identities=8% Similarity=-0.094 Sum_probs=240.3
Q ss_pred chhhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004743 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (732)
Q Consensus 147 ~~~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~ 226 (732)
....++..+. ...+.++.++|..+|++|.. ..|+..+|..++.+|.+.|++++|+.+|+.+.. ..++.
T Consensus 83 ~~~~~~~~~~--~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 150 (597)
T 2xpi_A 83 REDYLRLWRH--DALMQQQYKCAAFVGEKVLD--------ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSS 150 (597)
T ss_dssp HHHHHHHHHH--HHHHTTCHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCH
T ss_pred HHHHHHHHHH--HHHHccCchHHHHHHHHHHh--------hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccch
Confidence 3444555555 56688999999999999953 234558999999999999999999999998864 36899
Q ss_pred HHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccC--------------CCC-Ccccccccccccccc
Q 004743 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR--------------DMD-NNGQLDYGSSPMIDK 291 (732)
Q Consensus 227 ~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~--------------g~~-d~~tyn~LI~~~~~~ 291 (732)
.+++.++.+|. +.|++++|..+|+ ++.... +.+ +..+|+.++.+
T Consensus 151 ~~~~~l~~~~~----------~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 209 (597)
T 2xpi_A 151 ACRYLAAFCLV----------KLYDWQGALNLLG-------ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV---- 209 (597)
T ss_dssp HHHHHHHHHHH----------HTTCHHHHHHHHC-------SSCTTC----------CCCSSCCHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHH----------HHhhHHHHHHHHh-------ccCCccccccccccccccccccchhHHHHHHHHHH----
Confidence 99999999999 8999999999995 222221 223 57789999999
Q ss_pred ccccccCChhHHHHHHHHHHHcCCCCCcccc-c-h-----------------------------------hhhhhccc--
Q 004743 292 LESNSSYRFDDLDSTFNEKENLGQFSNGHMK-L-N-----------------------------------SQLLDGRS-- 332 (732)
Q Consensus 292 ~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty-~-~-----------------------------------~~li~~~~-- 332 (732)
|.+.|++++|..+|++|.+.+ |+.... . . ..++..++
T Consensus 210 --~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 210 --YTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred --HHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence 999999999999999999864 443221 1 0 01122222
Q ss_pred ---cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004743 333 ---NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDM 409 (732)
Q Consensus 333 ---~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l 409 (732)
+.|..++.+|... .+|..+|+. ++.+|.+.|++++|.++|++|...+ +.+..+|+.++.+|.+.|+.++|.++
T Consensus 286 g~~~~A~~~~~~~~~~--~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL--EKSSDLLLC-KADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp HHHHHHHHHHHTSTTG--GGCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred chHHHHHHHHHHhhcC--CchHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4455566666654 467888888 8888888888888888888888765 34677888888888888888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 004743 410 VKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (732)
Q Consensus 410 ~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~ 489 (732)
+++|.+. .+.+..+|+.+..+|++.|++++|.++|++|.+.. ..+..+|+.++.+|++.|++++|.++|++|.+. .
T Consensus 362 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 437 (597)
T 2xpi_A 362 SNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--F 437 (597)
T ss_dssp HHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--T
T ss_pred HHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 8888754 34567788888888888888888888888887643 235778888888888888888888888888766 4
Q ss_pred CC-hhHHHH-HHHHHhchHHHHhc
Q 004743 490 VS-PSTADV-IAKWFNSKEAARLG 511 (732)
Q Consensus 490 ~~-p~t~~~-I~~~~~~~~~~~a~ 511 (732)
+. +.++.. +..+++.+...++.
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHH
Confidence 32 235554 55555555544443
No 5
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=99.82 E-value=3.6e-21 Score=187.81 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=102.3
Q ss_pred CccccccccceecccCC--CCChhhHHHHHHHHHhhCCCCCc-cEEEecccccc-CCCCCChhhHHHHHHHHHcCceeeC
Q 004743 604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRIT-GHKMDQPVNRALIEKWKNADALYAT 679 (732)
Q Consensus 604 pyD~v~d~~nv~~~~~~--~~~~~~i~~vv~~l~~~~~~~~~-~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (732)
.--|||||+|||++.++ .|++.+|..+|++|++ +|+. ++|+++..+.. .+...+..++++|++|.+.+.|++|
T Consensus 24 lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yF~~---RGh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k~g~L~~T 100 (223)
T 3v33_A 24 LRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFT 100 (223)
T ss_dssp BCCEEEEHHHHHHHSSSTTSEEHHHHHHHHHHHHT---TTCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHHTTCEEEE
T ss_pred CCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechhhhccccccCCCCcHHHHHHHHHCCCEEEC
Confidence 45689999999987655 7899999999999999 7777 44566554433 2334456789999999999999999
Q ss_pred CCC--------CCchHHHHHHHHhCCcEEEeCcccccccccccCCchhhhhhhccccccc
Q 004743 680 PTG--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQASVH 731 (732)
Q Consensus 680 ~~~--------s~DD~~~lyaa~~~~~~~vsnD~~RdH~~~l~~~~~f~rW~~~hq~~~~ 731 (732)
|++ ++||+|||++|.+.+++|||||+||||.. ....|.+|.+.|+|.|+
T Consensus 101 Ps~~v~G~r~~sydD~~iL~~A~~~~g~IVSND~yRD~~~---e~p~~k~~Ie~rlI~yt 157 (223)
T 3v33_A 101 PSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQG---ERQEWKRFIEERLLMYS 157 (223)
T ss_dssp CEEEETTEEEECCHHHHHHHHHHHTTCEEECSCCCHHHHT---TCHHHHHHHHHHEECCE
T ss_pred CCCCcCCccccccchHHHHHHHHHcCCEEEeCccHHHHHh---hCHHHHHHHHhCeeeEE
Confidence 999 89999999999999999999999999985 23468899999999985
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.6e-20 Score=219.20 Aligned_cols=126 Identities=15% Similarity=0.006 Sum_probs=115.8
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~---~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~ 426 (732)
-.+|||+ ||++||+.|++++|.++|++|.+ .|+.||++|||+||+|||+.|++++|.++|++|++.|+.||++|||
T Consensus 126 ~~~Tyna-LIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLA-FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3568889 99999999999999999998874 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004743 427 PALSVFCNNGDV-DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (732)
Q Consensus 427 ~lI~~~~~~g~~-~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (732)
+||.++|+.|+. ++|.++|++|.+.|+.||.+||+++|.++.+.+-++.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 999999999985 78999999999999999999999999887776544333
No 7
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=9.4e-21 Score=221.16 Aligned_cols=165 Identities=10% Similarity=-0.065 Sum_probs=134.4
Q ss_pred CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHH
Q 004743 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (732)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (732)
-.+|||+||++ ||+.|++++|.++|++|.+. ..+|+.||++|||+
T Consensus 126 ~~~TynaLIdg------lcK~G~leeA~~Lf~eM~~m-----------------------------~~kG~~PdvvTYNt 170 (1134)
T 3spa_A 126 QQQRLLAFFKC------CLLTDQLPLAHHLLVVHHGQ-----------------------------RQKRKLLTLDMYNA 170 (1134)
T ss_dssp HHHHHHHHHHH------HHHHTCHHHHHHHHHHHHHS-----------------------------HHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHH-----------------------------hhcCCCCCHhHHHH
Confidence 34689999999 99999999999999998653 23355556666668
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004743 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG-DMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (732)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~-~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~ 435 (732)
||+|||+.|++++|.++|++|.+.|+.||++|||+||+++|+.|+. ++|.++|++|.+.|+.||.++|+++|.++.+.
T Consensus 171 -LI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 171 -VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp -HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred -HHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999999999999999999999999999999999999999985 78999999999999999999999999887776
Q ss_pred CChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCC---------hHHHHHHHHH
Q 004743 436 GDVDKACSVEEHMLEHGVYPE------EPELEALLRVSVEAGK---------GDRVYYLLHK 482 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd------~~ty~~Li~~~~~~g~---------~~~A~~l~~~ 482 (732)
+-++... ++ ..++.|+ ..|...|.+.|.+.+. .++...+|++
T Consensus 250 ~vL~~Vr----kv-~P~f~p~~~~~~~~~t~~LL~dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 250 TVLKAVH----KV-KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HHHHHHG----GG-CCCCCCCCCCCCCCCCCTTTHHHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHHHHHH----Hh-CcccCCCCCCcccccchHHHHHHHccCCCCcCccccCCHHHHHHHHHH
Confidence 5443333 33 3455555 5566777788877662 4566666654
No 8
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=99.80 E-value=2.5e-20 Score=178.18 Aligned_cols=123 Identities=17% Similarity=0.172 Sum_probs=101.8
Q ss_pred CCccccccccceecccCC--CCChhhHHHHHHHHHhhCCCCCcc-EEEecccccc-CCCCCChhhHHHHHHHHHcCceee
Q 004743 603 GPFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKWP-LIVLHNRRIT-GHKMDQPVNRALIEKWKNADALYA 678 (732)
Q Consensus 603 ~pyD~v~d~~nv~~~~~~--~~~~~~i~~vv~~l~~~~~~~~~~-l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 678 (732)
..--|||||+|||++.++ .|++.+|..+|++|++ +|+.+ +|+++..+.. .++.....+++++++|.+.+.++.
T Consensus 23 ~lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yf~~---rGh~~v~VfvP~~r~~~~~~~~~~~d~~~L~~L~~~g~l~~ 99 (185)
T 3v32_B 23 DLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVF 99 (185)
T ss_dssp CBCCEEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TTCCCEEEEEEGGGGSCCCTTSCEECTHHHHHHHHTTCEEE
T ss_pred CCCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechHhhhcccccCCCCCHHHHHHHHHCCCEEE
Confidence 345689999999988665 7899999999999999 67764 4565544433 233445778999999999999999
Q ss_pred CCCC--------CCchHHHHHHHHhCCcEEEeCcccccccccccCCchhhhhhhccccccc
Q 004743 679 TPTG--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQASVH 731 (732)
Q Consensus 679 ~~~~--------s~DD~~~lyaa~~~~~~~vsnD~~RdH~~~l~~~~~f~rW~~~hq~~~~ 731 (732)
||++ ++||+|||++|.+.+|+|||||+||||..+ ...+.+|.+.|+|.|+
T Consensus 100 TPs~~~~g~~~~~ydD~~il~~A~~~~g~IVSND~~rD~~~~---~p~~k~~Ie~rli~yt 157 (185)
T 3v32_B 100 TPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQEWKRFIEERLLMYS 157 (185)
T ss_dssp ECCCC-------CCHHHHHHHHHHHTTCEEECSCCCHHHHHH---CHHHHHHHHHHEECCE
T ss_pred CCCcccCCCcccCccHHHHHHHHHHcCCEEEeCccHHHHHhh---CHHHHHHHHhCcceeE
Confidence 9999 899999999999999999999999999862 2357777899999985
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.54 E-value=1.2e-12 Score=141.94 Aligned_cols=287 Identities=11% Similarity=-0.032 Sum_probs=199.1
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCS 237 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~-tyn~LL~~~~ 237 (732)
...+.++.++|.+.|+.+.+. .| .+..+|..+..++.+.|++++|++.|+++.+. .|+.. .+..+-..|.
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~--~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRL--KP-----DFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CT-----TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHc--Cc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 344667788888888877543 11 23356778888888888888888888887764 34433 3444444555
Q ss_pred hcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCC
Q 004743 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (732)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~P 317 (732)
..|++++|...|. ++... ...+..+|+.+... +...|++++|...|+++.+.. |
T Consensus 147 ----------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p 200 (388)
T 1w3b_A 147 ----------ALGRLEEAKACYL-------KAIET-QPNFAVAWSNLGCV------FNAQGEIWLAIHHFEKAVTLD--P 200 (388)
T ss_dssp ----------TTSCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHC--T
T ss_pred ----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--C
Confidence 6788888888884 44432 22255668888777 888888888888888887753 4
Q ss_pred Ccc-ccc-hhhhhhc--cccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004743 318 NGH-MKL-NSQLLDG--RSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA 392 (732)
Q Consensus 318 d~~-ty~-~~~li~~--~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~ 392 (732)
+.. .|. .+.+... ..+.|...+..... +.|+ ..+|+. +...|.+.|++++|.+.|+++.+.. +.+..+|..
T Consensus 201 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 276 (388)
T 1w3b_A 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVHGN-LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCN 276 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 432 222 1111111 11222223333322 3454 455666 8888888999999999998888754 335678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004743 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (732)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (732)
+...+.+.|++++|.+.|+++.+. .+.+..+|+.+...+.+.|++++|.+.++++.+.. ..+..+|..+..+|.+.|+
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 888999999999999999888876 34567888888888999999999999998887642 3346788888888899999
Q ss_pred hHHHHHHHHHHHhc
Q 004743 473 GDRVYYLLHKLRTS 486 (732)
Q Consensus 473 ~~~A~~l~~~M~~~ 486 (732)
+++|...|+++.+.
T Consensus 355 ~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 355 LQEALMHYKEAIRI 368 (388)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999888764
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.50 E-value=8.2e-12 Score=135.25 Aligned_cols=307 Identities=10% Similarity=-0.051 Sum_probs=227.1
Q ss_pred hhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 004743 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~ 240 (732)
-+.++.++|.+.++.+.+. . +.+...+..+-..+.+.|++++|..+++...+.. +.+..+|..+-..|.
T Consensus 10 ~~~g~~~~A~~~~~~~~~~--~-----p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~--- 78 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQ--E-----PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK--- 78 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHH--C-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH---
T ss_pred HHCCCHHHHHHHHHHHHHh--C-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH---
Confidence 3678999999999888543 1 2233566677778888999999999998888653 557889999999999
Q ss_pred cCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 241 ~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
+.|++++|...|. ++... ...+...|..+..+ +.+.|++++|...|.++.+. .|+..
T Consensus 79 -------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~--~p~~~ 135 (388)
T 1w3b_A 79 -------ERGQLQEAIEHYR-------HALRL-KPDFIDGYINLAAA------LVAAGDMEGAVQAYVSALQY--NPDLY 135 (388)
T ss_dssp -------HHTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHSCSSHHHHHHHHHHHH--CTTCT
T ss_pred -------HCCCHHHHHHHHH-------HHHHc-CcchHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCCcH
Confidence 7899999999995 44432 22244568888888 99999999999999998876 47665
Q ss_pred ccc--hhhhhh--ccccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004743 321 MKL--NSQLLD--GRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR 395 (732)
Q Consensus 321 ty~--~~~li~--~~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~ 395 (732)
... .+.+.. +..+.|...+..+... .|+ ..+|+. +...|.+.|++++|.+.|+++.... +-+...|..+-.
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 211 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSN-LGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGN 211 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 443 111111 2224555566666543 344 456666 8888999999999999999988754 345678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004743 396 MAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (732)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (732)
.+...|++++|...+++.... .| +..+|..+...|.+.|++++|.+.|+++.+.. ..+..+|..+...|.+.|+++
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 288 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999887765 34 46788889999999999999999999988764 234678888999999999999
Q ss_pred HHHHHHHHHHhccCCCC-hhHHHH-HHHHHhchHHHHh
Q 004743 475 RVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARL 510 (732)
Q Consensus 475 ~A~~l~~~M~~~~~~~~-p~t~~~-I~~~~~~~~~~~a 510 (732)
+|..+|+++.+. .|. +.++.. ...++..+...++
T Consensus 289 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 289 EAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999998876 332 334444 4444444444333
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.45 E-value=1.8e-11 Score=134.90 Aligned_cols=292 Identities=9% Similarity=-0.067 Sum_probs=187.2
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
...+.++.++|..+|+.+.+. .+.+..+|..+..+|.+.|++++|+..|+++.+.+ +.+...+..+...|.
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 105 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDG-------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL- 105 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHh-------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH-
Confidence 455788999999999998654 23356899999999999999999999999999865 345788899999999
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCc---ccccccccc------ccccccccccCChhHHHHHHHH
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN---GQLDYGSSP------MIDKLESNSSYRFDDLDSTFNE 309 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~---~tyn~LI~~------~~~~~~~~~~g~~~~A~~lf~e 309 (732)
+.|++++|...|. ++... ...+. ..|..++.. ......+...|++++|..+|++
T Consensus 106 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 106 ---------KQGKLDEAEDDFK-------KVLKS-NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHhc-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8899999999995 44432 22233 444444221 0001227789999999999999
Q ss_pred HHHcCCCCC-ccccchhhhhhcc-----ccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCC
Q 004743 310 KENLGQFSN-GHMKLNSQLLDGR-----SNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (732)
Q Consensus 310 M~~~gi~Pd-~~ty~~~~li~~~-----~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (732)
+.+.. |+ ...+. .+...+ .+.|...+..+.... ..+..+|+. +...|.+.|++++|.+.|+++....
T Consensus 169 ~~~~~--~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~- 241 (450)
T 2y4t_A 169 ILEVC--VWDAELRE--LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYK-ISTLYYQLGDHELSLSEVRECLKLD- 241 (450)
T ss_dssp HHHHC--TTCHHHHH--HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhC--CCChHHHH--HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 98753 32 23332 222222 134444454444321 123445555 6666666677777777776666432
Q ss_pred CCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHH
Q 004743 384 PMNEASLTAV------------GRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACSVEE 446 (732)
Q Consensus 384 ~pd~~ty~~L------------I~~~~~~g~~~~A~~l~~~M~~~g~~pd-----~~ty~~lI~~~~~~g~~~~A~~l~~ 446 (732)
+.+...+..+ ...|.+.|++++|..+|+++.+. .|+ ...|..+...+.+.|++++|.+.++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2233334433 56666667777777777666653 233 3356666666666677777777666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 447 HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 447 ~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+.+.. ..+...|..+..+|...|++++|...|++..+.
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 665542 224566666666666667777777776666554
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.39 E-value=9.4e-11 Score=129.02 Aligned_cols=246 Identities=10% Similarity=0.037 Sum_probs=160.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchh
Q 004743 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (732)
Q Consensus 189 p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~e 268 (732)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..+|. ..|+.++|...|. +
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~ 85 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----------AMGKSKAALPDLT-------K 85 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH----------HCCCHHHHHHHHH-------H
Confidence 455789999999999999999999999999753 456889999999999 8899999999995 4
Q ss_pred hcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc----cccchhhhhhccccccCCCchhhhc
Q 004743 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG----HMKLNSQLLDGRSNLERGPDDQSRK 344 (732)
Q Consensus 269 m~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~----~ty~~~~li~~~~~~a~~~~~~m~~ 344 (732)
+.+. +..+...|..+... +.+.|++++|..+|+++.+.. |+. ..+. .+...+.
T Consensus 86 al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~--~l~~~~~------------ 142 (450)
T 2y4t_A 86 VIQL-KMDFTAARLQRGHL------LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQS--QLIKSDE------------ 142 (450)
T ss_dssp HHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHH--HHHHHHH------------
T ss_pred HHhc-CCCcHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHH--HHHHHHH------------
Confidence 4443 33356678888888 999999999999999998753 443 2222 1111100
Q ss_pred cCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 004743 345 KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424 (732)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 424 (732)
...+.. +-..+.+.|++++|.++|+++.... +.+..++..+..+|.+.|++++|.++|+++.+.. +.+..+
T Consensus 143 ------~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 213 (450)
T 2y4t_A 143 ------MQRLRS-QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEA 213 (450)
T ss_dssp ------HHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHH
T ss_pred ------HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 000011 2334556666666666666665532 3355666666666666666666666666665441 234556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHH------------HHHHHhcCChHHHHHHHHHHHhc
Q 004743 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEAL------------LRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~L------------i~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
|..+...|...|+.++|.+.|+++.+. .|+ ...+..+ ...|.+.|++++|..+|+++...
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666666666666666666543 233 2223333 45566666666666666666554
No 13
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.26 E-value=5.6e-12 Score=137.68 Aligned_cols=223 Identities=13% Similarity=0.103 Sum_probs=93.6
Q ss_pred hhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 004743 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~ 240 (732)
.+.++.++|.+.++.+ +. | .+|..|..++.+.|++++|++.|.+. +|..+|..++.+|.
T Consensus 14 ~~~~~ld~A~~fae~~------~~----~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae--- 72 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NE----P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN--- 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CC----h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHH---
Confidence 3777899999999998 11 2 58999999999999999999999753 68889999999998
Q ss_pred cCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 241 ~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
..|++++|+..+. |..+ ..++..+.+.|+.+ |++.|+++++.++++ .|+..
T Consensus 73 -------~~g~~EeAi~yl~--------~ark-~~~~~~i~~~Li~~------Y~Klg~l~e~e~f~~-------~pn~~ 123 (449)
T 1b89_A 73 -------TSGNWEELVKYLQ--------MARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPNNA 123 (449)
T ss_dssp ----------------------------------------------------------CHHHHTTTTT-------CC---
T ss_pred -------hCCCHHHHHHHHH--------HHHH-hCccchhHHHHHHH------HHHhCCHHHHHHHHc-------CCcHH
Confidence 8899999999773 4443 34467789999999 999999999987774 24444
Q ss_pred ccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004743 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM 400 (732)
Q Consensus 321 ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~ 400 (732)
+|+. +-+.|...|++++|..+|..+ ..|..|+.++.+.
T Consensus 124 --------------------------------a~~~-IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~L 161 (449)
T 1b89_A 124 --------------------------------HIQQ-VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 161 (449)
T ss_dssp ----------------------------------------------CTTTHHHHHHHT---------TCHHHHHHHHHTT
T ss_pred --------------------------------HHHH-HHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHh
Confidence 4446 888999999999999999987 3699999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004743 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (732)
Q Consensus 401 g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~ 480 (732)
|++++|.+.+..+ .++.+|..++.+|+..|+++.|...... +..+......++..|.+.|++++|..+|
T Consensus 162 g~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 162 GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp TCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999887 3789999999999999999999655443 3334444667999999999999999999
Q ss_pred HHHHhc
Q 004743 481 HKLRTS 486 (732)
Q Consensus 481 ~~M~~~ 486 (732)
+.-...
T Consensus 231 e~aL~l 236 (449)
T 1b89_A 231 EAALGL 236 (449)
T ss_dssp HHHTTS
T ss_pred HHHhCC
Confidence 887544
No 14
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.26 E-value=1.8e-09 Score=112.61 Aligned_cols=256 Identities=9% Similarity=-0.064 Sum_probs=198.2
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
....++..+|..+|+++.+.. +.+...|..+...+.+.|++++|...|+++.+.. +.+..++..+...|.
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~-- 100 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT-- 100 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred HHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH--
Confidence 447789999999999986642 2245788899999999999999999999998763 346778888888888
Q ss_pred ccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccc--------------cc-cccccccccccCChhHHH
Q 004743 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG--------------SS-PMIDKLESNSSYRFDDLD 304 (732)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~L--------------I~-~~~~~~~~~~~g~~~~A~ 304 (732)
..|+.++|...+. +.... ...+...+..+ .. . +...|++++|.
T Consensus 101 --------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A~ 158 (327)
T 3cv0_A 101 --------NEHNANAALASLR-------AWLLS-QPQYEQLGSVNLQADVDIDDLNVQSEDFF------FAAPNEYRECR 158 (327)
T ss_dssp --------HTTCHHHHHHHHH-------HHHHT-STTTTTC--------------------CC------TTSHHHHHHHH
T ss_pred --------HcCCHHHHHHHHH-------HHHHh-CCccHHHHHHHhHHHHHHHHHHHHHHhHH------HHHcccHHHHH
Confidence 7899999999995 33332 11122233333 22 3 67788999999
Q ss_pred HHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCC
Q 004743 305 STFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP 384 (732)
Q Consensus 305 ~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~ 384 (732)
.+|+++.+.. |+ +...+.. +...|.+.|++++|.+.|+++.... +
T Consensus 159 ~~~~~~~~~~--~~-------------------------------~~~~~~~-la~~~~~~~~~~~A~~~~~~~~~~~-~ 203 (327)
T 3cv0_A 159 TLLHAALEMN--PN-------------------------------DAQLHAS-LGVLYNLSNNYDSAAANLRRAVELR-P 203 (327)
T ss_dssp HHHHHHHHHS--TT-------------------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHhhC--CC-------------------------------CHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhC-C
Confidence 9999887653 21 2223444 7788999999999999999988764 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---------
Q 004743 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP--------- 455 (732)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p--------- 455 (732)
.+..+|..+...+...|++++|...+++..+.. +.+...|..+...|.+.|+.++|.+.+++..+..-..
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 282 (327)
T 3cv0_A 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASR 282 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CC
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchh
Confidence 467889999999999999999999999987763 3357788889999999999999999999987653221
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 456 --EEPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 456 --d~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
+...|..+..+|.+.|+.++|..++++.
T Consensus 283 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 283 EATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred hcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4778899999999999999999988643
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.24 E-value=1.7e-09 Score=113.00 Aligned_cols=259 Identities=9% Similarity=-0.075 Sum_probs=205.8
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
....++..+|.++|+.+.+... .+...+..++..+.+.|++++|+.+|+++.+.. +-+...|..+-..|.
T Consensus 32 ~~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~-- 101 (330)
T 3hym_B 32 HYYNCDFKMCYKLTSVVMEKDP-------FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL-- 101 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-------TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH--
T ss_pred HHHcCCHHHHHHHHHHHHHcCC-------CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH--
Confidence 3456899999999999865421 122466777888899999999999999999753 234667777777777
Q ss_pred ccCCcccCCCC-ChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCC
Q 004743 240 AVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (732)
Q Consensus 240 ~~~~~~~~k~g-~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd 318 (732)
..| +.++|...|. +.... ...+...|..+... +...|++++|...|++..+.. |+
T Consensus 102 --------~~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~ 157 (330)
T 3hym_B 102 --------MVGHKNEHARRYLS-------KATTL-EKTYGPAWIAYGHS------FAVESEHDQAMAAYFTAAQLM--KG 157 (330)
T ss_dssp --------HSCSCHHHHHHHHH-------HHHTT-CTTCTHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHT--TT
T ss_pred --------HhhhhHHHHHHHHH-------HHHHh-CCccHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhc--cc
Confidence 678 8999999995 33332 22255568888888 999999999999999887753 22
Q ss_pred ccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004743 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (732)
Q Consensus 319 ~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~ 398 (732)
+...+.. +...|...|++++|.+.|++..... +.+..+|..+...+.
T Consensus 158 -------------------------------~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 204 (330)
T 3hym_B 158 -------------------------------CHLPMLY-IGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAF 204 (330)
T ss_dssp -------------------------------CSHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred -------------------------------cHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 1122334 6778899999999999999998764 456789999999999
Q ss_pred hcCCHHHHHHHHHHHHHcC--------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004743 399 SMGDGDMAFDMVKRMKSLG--------INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g--------~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (732)
..|++++|...+++..+.. ...+..+|..+-..|...|+.++|.+.+++..+.. ..+...|..+-..|.+.
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHh
Confidence 9999999999999987641 13346788999999999999999999999998764 33577889999999999
Q ss_pred CChHHHHHHHHHHHhc
Q 004743 471 GKGDRVYYLLHKLRTS 486 (732)
Q Consensus 471 g~~~~A~~l~~~M~~~ 486 (732)
|+.++|...|++..+.
T Consensus 284 g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 284 GNFENAVDYFHTALGL 299 (330)
T ss_dssp TCHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHHcc
Confidence 9999999999988765
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.23 E-value=1.4e-09 Score=115.99 Aligned_cols=257 Identities=10% Similarity=-0.077 Sum_probs=189.0
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
...+.++..+|...|+.+.+.. +.+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...|.
T Consensus 73 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~- 143 (368)
T 1fch_A 73 RRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT- 143 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence 3447789999999999996542 2345789999999999999999999999999764 346888999998998
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcccccc---------------ccccccccccccccCChhHH
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY---------------GSSPMIDKLESNSSYRFDDL 303 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~---------------LI~~~~~~~~~~~~g~~~~A 303 (732)
..|+.++|...+. ++... ...+...+.. .+.. +...|++++|
T Consensus 144 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A 200 (368)
T 1fch_A 144 ---------NESLQRQACEILR-------DWLRY-TPAYAHLVTPAEEGAGGAGLGPSKRILGS------LLSDSLFLEV 200 (368)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHT-STTTGGGCC---------------CTTHH------HHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHHh-CcCcHHHHHHHHHHhhhhcccHHHHHHHH------HhhcccHHHH
Confidence 8899999999995 33332 1112222221 2333 4477888888
Q ss_pred HHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCC
Q 004743 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (732)
Q Consensus 304 ~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (732)
...|+++.+.. |+.. +..+|.. +...|.+.|++++|.+.|++.....
T Consensus 201 ~~~~~~a~~~~--p~~~-----------------------------~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~- 247 (368)
T 1fch_A 201 KELFLAAVRLD--PTSI-----------------------------DPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVR- 247 (368)
T ss_dssp HHHHHHHHHHS--TTSC-----------------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhC--cCcc-----------------------------cHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 88888877642 2210 1223444 7778888888889988888887653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---------
Q 004743 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY--------- 454 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~--------- 454 (732)
+.+..+|..+...|...|++++|...|++..+.. +.+...|..+-..|.+.|++++|.+.|+.+.+..-.
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 3457788888888888899999988888877652 234677888888888889999988888887654211
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004743 455 -PEEPELEALLRVSVEAGKGDRVYYLLH 481 (732)
Q Consensus 455 -pd~~ty~~Li~~~~~~g~~~~A~~l~~ 481 (732)
....+|..|..+|.+.|+.++|..++.
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 125788888888888888888887765
No 17
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.22 E-value=2.1e-09 Score=119.97 Aligned_cols=294 Identities=11% Similarity=-0.058 Sum_probs=210.8
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
..+.++..+|.+.|+++.... |+...|..+..+|.+.|++++|++.|+++.+.+ +-+...|..+..+|.
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~-- 84 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK--------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE-- 84 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH--
T ss_pred HHHhccHHHHHHHHHHHHhcC--------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH--
Confidence 446789999999999997653 566899999999999999999999999999765 345678888999998
Q ss_pred ccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcccccccccc--------------------------------
Q 004743 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSP-------------------------------- 287 (732)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~-------------------------------- 287 (732)
+.|+.++|...|. .+..... .+......++..
T Consensus 85 --------~~g~~~~A~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 148 (514)
T 2gw1_A 85 --------GLGKFADAMFDLS-------VLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA 148 (514)
T ss_dssp --------HTTCHHHHHHHHH-------HHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred --------HHhhHHHHHHHHH-------HHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh
Confidence 8899999999985 3322211 000000000000
Q ss_pred -------------------------c------------------cc-cccccccCChhHHHHHHHHHHH-----cCCCCC
Q 004743 288 -------------------------M------------------ID-KLESNSSYRFDDLDSTFNEKEN-----LGQFSN 318 (732)
Q Consensus 288 -------------------------~------------------~~-~~~~~~~g~~~~A~~lf~eM~~-----~gi~Pd 318 (732)
. .. ...+.+.|++++|..+|+++.+ ..-.|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 228 (514)
T 2gw1_A 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred hHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence 0 00 0001236778888888887776 322333
Q ss_pred ccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004743 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (732)
Q Consensus 319 ~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~ 398 (732)
..... ..+...|.. +...+...|++++|.++|+++.... |+..+|..+...|.
T Consensus 229 ~~~~~------------------------~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~ 281 (514)
T 2gw1_A 229 DEKLK------------------------EKLAISLEH-TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMA 281 (514)
T ss_dssp CHHHH------------------------HHHHHHHHH-HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred ccccC------------------------hHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHH
Confidence 22111 012334445 7788899999999999999998765 44888999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004743 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (732)
..|++++|...++++.... +.+...|..+...|...|++++|...+++..+.. ..+...+..+...|.+.|++++|..
T Consensus 282 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999987653 3456788889999999999999999999998764 2356788888999999999999999
Q ss_pred HHHHHHhccCCCC-hhHHHH-HHHHHhchHHHHhc
Q 004743 479 LLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG 511 (732)
Q Consensus 479 l~~~M~~~~~~~~-p~t~~~-I~~~~~~~~~~~a~ 511 (732)
+|+++.+. .+. +..+.. ...+...+...++.
T Consensus 360 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 360 LFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHH
Confidence 99998876 332 334433 44555555544443
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.22 E-value=9.6e-10 Score=117.69 Aligned_cols=258 Identities=10% Similarity=-0.063 Sum_probs=193.0
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
...+.++.++|.+.|+.+.+.. +.+..+|..+...|.+.|++++|+..|+++.... +.+..+|..+...|.
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 144 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT- 144 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence 3457789999999999986642 2345899999999999999999999999999764 345788999999999
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCc----------cccccccccccccccccccCChhHHHHHHH
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN----------GQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~----------~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~ 308 (732)
..|++++|...|. ++.+. ...+. ..++.+... +...|++++|..+|+
T Consensus 145 ---------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 145 ---------NTSHQQDACEALK-------NWIKQ-NPKYKYLVKNKKGSPGLTRRMSKS------PVDSSVLEGVKELYL 201 (365)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHH-CHHHHCC-------------------------CCHHHHHHHHHHH
T ss_pred ---------ccccHHHHHHHHH-------HHHHh-CccchHHHhhhccchHHHHHHHHH------HhhhhhHHHHHHHHH
Confidence 8899999999995 33321 11111 123344566 888999999999999
Q ss_pred HHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHH
Q 004743 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (732)
Q Consensus 309 eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ 388 (732)
++.+.. |+. ++...|+. +...|.+.|++++|.+.|++..... +.+..
T Consensus 202 ~al~~~--p~~-----------------------------~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 248 (365)
T 4eqf_A 202 EAAHQN--GDM-----------------------------IDPDLQTG-LGVLFHLSGEFNRAIDAFNAALTVR-PEDYS 248 (365)
T ss_dssp HHHHHS--CSS-----------------------------CCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHhC--cCc-----------------------------cCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 887752 321 12334445 7788889999999999999988753 44688
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCCH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-----------YPEE 457 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-----------~pd~ 457 (732)
+|+.+..+|...|++++|...|++..+.. +.+..+|..+-..|.+.|+.++|.+.|+++.+..- ..+.
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 327 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG 327 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHH
Confidence 99999999999999999999999988762 23477888899999999999999999998875420 1135
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 004743 458 PELEALLRVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~l~~~ 482 (732)
..|..|-.++...|+.+.+..+..+
T Consensus 328 ~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 328 NIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7788888999999998888776553
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.20 E-value=5.1e-10 Score=119.84 Aligned_cols=246 Identities=9% Similarity=-0.047 Sum_probs=189.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhh
Q 004743 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (732)
Q Consensus 190 ~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em 269 (732)
+...|..+-..+.+.|++++|+++|+++.+.. +.+..+|..+-..|. +.|++++|...|. +.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~----------~~g~~~~A~~~~~-------~a 125 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQA----------ENENEQAAIVALQ-------RC 125 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 33568888899999999999999999999764 346888999999999 8899999999995 44
Q ss_pred cccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCC
Q 004743 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (732)
Q Consensus 270 ~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p 349 (732)
... ...+...|..+... +...|++++|...|+++.+.. |+..... ... ..
T Consensus 126 l~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p~~~~~~--~~~-------------------~~ 175 (365)
T 4eqf_A 126 LEL-QPNNLKALMALAVS------YTNTSHQQDACEALKNWIKQN--PKYKYLV--KNK-------------------KG 175 (365)
T ss_dssp HHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------
T ss_pred Hhc-CCCCHHHHHHHHHH------HHccccHHHHHHHHHHHHHhC--ccchHHH--hhh-------------------cc
Confidence 432 22256668888888 999999999999999998753 3322111 000 00
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 428 (732)
....++. +...|.+.|++++|.++|+++...... ++..+|..+...|...|++++|.+.|++..+.. +.+..+|+.+
T Consensus 176 ~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 253 (365)
T 4eqf_A 176 SPGLTRR-MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRL 253 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chHHHHH-HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 1112223 567888999999999999999986422 268899999999999999999999999988763 3457899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
...|.+.|++++|.+.|+++.+.. ..+...|..+-.+|.+.|++++|...|++..+.
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999998763 334788999999999999999999999988764
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.16 E-value=4.2e-09 Score=112.26 Aligned_cols=274 Identities=9% Similarity=-0.027 Sum_probs=195.3
Q ss_pred cCCchHHH-HHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 004743 164 TNDSGQYK-VRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (732)
Q Consensus 164 ~~~~~A~~-v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~ 242 (732)
++.++|.. .|++.... .++. ...+...|..+-..+.+.|++++|+.+|+++.+.. +.+...|..+-..|.
T Consensus 39 ~~~~~a~~~~~~~a~~~--~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~----- 109 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQF--EEEN-PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA----- 109 (368)
T ss_dssp -------CHHHHCCCCC--CSSC-TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHhhhhhHHHhc--CCCC-cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-----
Confidence 45556665 55543211 1221 11133567788889999999999999999999764 446778888888888
Q ss_pred CcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcccc
Q 004743 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (732)
Q Consensus 243 ~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty 322 (732)
+.|++++|...|. +.... ...+..+|..+... +...|++++|...|+++.... |+....
T Consensus 110 -----~~g~~~~A~~~~~-------~al~~-~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 168 (368)
T 1fch_A 110 -----ENEQELLAISALR-------RCLEL-KPDNQTALMALAVS------FTNESLQRQACEILRDWLRYT--PAYAHL 168 (368)
T ss_dssp -----HTTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTGGG
T ss_pred -----HCcCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--cCcHHH
Confidence 8899999999995 44433 22256668888888 999999999999999998764 332222
Q ss_pred chhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcC
Q 004743 323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMG 401 (732)
Q Consensus 323 ~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~-pd~~ty~~LI~~~~~~g 401 (732)
. ... +... ....++. .+. .+..+.+.|++++|.+.|+++...... ++..+|..+...|...|
T Consensus 169 ~--~~~-~~~~-----------~~~~~~~-~~~--~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 169 V--TPA-EEGA-----------GGAGLGP-SKR--ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp C--C----------------------------C--TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred H--HHH-HHHh-----------hhhcccH-HHH--HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 1 000 0000 0000000 000 223334889999999999999876422 25889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004743 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (732)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~ 481 (732)
++++|...+++..... +.+..+|..+...|...|++++|.+.|+++.+.. ..+...|..+...|.+.|++++|...|+
T Consensus 232 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 309 (368)
T 1fch_A 232 EYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFL 309 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999988762 3357789999999999999999999999998764 3457889999999999999999999999
Q ss_pred HHHhc
Q 004743 482 KLRTS 486 (732)
Q Consensus 482 ~M~~~ 486 (732)
+....
T Consensus 310 ~al~~ 314 (368)
T 1fch_A 310 EALNM 314 (368)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 21
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.13 E-value=4.2e-09 Score=117.49 Aligned_cols=268 Identities=9% Similarity=0.002 Sum_probs=210.9
Q ss_pred hhcCCchHHHHHHHHhh-----cCCCCCCC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004743 162 QRTNDSGQYKVRGITDE-----KGSKKSKK--DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~-----~g~~~~~~--~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~ 234 (732)
+.++.++|..+|+++.+ ....|+.. .+.+...|..+...+.+.|++++|+.+|+++.+.. |+...|..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHH
Confidence 36788999999999866 21122221 12345788889999999999999999999999765 44788888888
Q ss_pred HHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcC
Q 004743 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (732)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (732)
.|. ..|++++|...+. +.... ...+...|..+... +...|++++|...|++..+..
T Consensus 279 ~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 279 IMA----------DRNDSTEYYNYFD-------KALKL-DSNNSSVYYHRGQM------NFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp HHH----------TSSCCTTGGGHHH-------HHHTT-CTTCTHHHHHHHHH------HHHTTCTTHHHHHHHHHHHTC
T ss_pred HHH----------HCCCHHHHHHHHH-------HHhhc-CcCCHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHhC
Confidence 888 8899999999995 44332 22255668888888 999999999999999887752
Q ss_pred CCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004743 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (732)
Q Consensus 315 i~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI 394 (732)
|+ +...|.. +...|.+.|++++|.++|+++.... +.+..+|..+.
T Consensus 335 --~~-------------------------------~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 379 (514)
T 2gw1_A 335 --PE-------------------------------NIFPYIQ-LACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFA 379 (514)
T ss_dssp --SS-------------------------------CSHHHHH-HHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHH
T ss_pred --hh-------------------------------hHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHH
Confidence 22 1123334 7788899999999999999998753 33567899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CCCC----hhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004743 395 RMAMSMGDGDMAFDMVKRMKSLG-INPR----LRSYGPALSVFCN---NGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (732)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g-~~pd----~~ty~~lI~~~~~---~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (732)
..|...|++++|...++++.... -.|+ ...|..+...|.. .|++++|.+.++.+.+.. ..+...|..+...
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 458 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 99999999999999999987642 1122 3388889999999 999999999999998764 3457788899999
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 467 SVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 467 ~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
|.+.|+.++|...|++..+. .+...
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 99999999999999999887 55544
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.12 E-value=1.1e-08 Score=106.66 Aligned_cols=246 Identities=8% Similarity=-0.083 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
..|-.+-..+.+.|++++|+.+|+++.+.. +-+...+..+...|. ..|+.++|...|. +...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~a~~ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQA----------ENEKDGLAIIALN-------HARM 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 445666778899999999999999998764 336778888888888 7899999999995 3433
Q ss_pred cCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCCh
Q 004743 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (732)
Q Consensus 272 ~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~ 351 (732)
. ...+...|..+... +...|++++|...|++..... |+..... ..+. ...|+.
T Consensus 84 ~-~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~~--~~~~----------------~~~~~~ 136 (327)
T 3cv0_A 84 L-DPKDIAVHAALAVS------HTNEHNANAALASLRAWLLSQ--PQYEQLG--SVNL----------------QADVDI 136 (327)
T ss_dssp H-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTTTC-----------------------------
T ss_pred c-CcCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--CccHHHH--HHHh----------------HHHHHH
Confidence 2 22255567777788 999999999999999988753 3322221 0000 000111
Q ss_pred hhhHHHH-HH-HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004743 352 QDADEIR-LS-EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (732)
Q Consensus 352 ~tyn~~l-I~-~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI 429 (732)
..... + .. .+...|++++|.++++++.... +.+..++..+...|...|++++|.+.++++.+.. +.+..+|..+.
T Consensus 137 ~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 213 (327)
T 3cv0_A 137 DDLNV-QSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLG 213 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHH-HHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 11111 1 12 3677889999999999998764 3478899999999999999999999999988763 34577899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..|...|+.++|.+.++++.+.. ..+...|..+...|.+.|++++|...|++....
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999988764 345788999999999999999999999998776
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.10 E-value=8.5e-11 Score=128.39 Aligned_cols=211 Identities=13% Similarity=0.090 Sum_probs=81.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccc
Q 004743 203 KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLD 282 (732)
Q Consensus 203 k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn 282 (732)
+.|++++|.++++++. +..+|..|..++. +.|++++|++.|. ..+|..+|.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l----------~~g~~~eAIdsfi-------------ka~D~~~y~ 65 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQL----------QKGMVKEAIDSYI-------------KADDPSSYM 65 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHH----------HcCCHHHHHHHHH-------------cCCCHHHHH
Confidence 5688999999999993 3458999999999 8899999999994 233666899
Q ss_pred cccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHH
Q 004743 283 YGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED 362 (732)
Q Consensus 283 ~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~ 362 (732)
.++.+ +...|++++|..+++...+. .|+..+. +. ++.+|
T Consensus 66 ~V~~~------ae~~g~~EeAi~yl~~ark~--~~~~~i~--------------------------------~~-Li~~Y 104 (449)
T 1b89_A 66 EVVQA------ANTSGNWEELVKYLQMARKK--ARESYVE--------------------------------TE-LIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH------HHhCCCHHHHHHHHHHHHHh--CccchhH--------------------------------HH-HHHHH
Confidence 99999 99999999999966654442 3333333 25 99999
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 004743 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~ 442 (732)
.+.|+++++.++++ .|+..+|+.+-..|...|.+++|..+|..+ ..|..+..++++.|++++|.
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 99999999998885 388889999999999999999999999976 58999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHHHHHHHhchHHHHh
Q 004743 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKEAARL 510 (732)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~-t~~~I~~~~~~~~~~~a 510 (732)
+.+..+ .+..+|..++.+|+..|+++.|......+ ...|+ ...++.-+-+.|...++
T Consensus 169 ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 169 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHH
Confidence 999988 38899999999999999999996655443 34566 33445555445444443
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.10 E-value=8e-09 Score=107.83 Aligned_cols=234 Identities=11% Similarity=-0.106 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
..+..+...+...|++++|+++|+++.+.. +.+...+..+...+. ..|+.++|...+. ++..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~~~~ 84 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLV----------ELNKANELFYLSH-------KLVD 84 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHH----------HHTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHH----------HhhhHHHHHHHHH-------HHHH
Confidence 567778888899999999999999998654 223445556666676 6789999999995 4443
Q ss_pred cCCCCCccccccccccccccccccccC-ChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCC
Q 004743 272 SRDMDNNGQLDYGSSPMIDKLESNSSY-RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (732)
Q Consensus 272 ~~g~~d~~tyn~LI~~~~~~~~~~~~g-~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd 350 (732)
. ...+...|..+-.. +...| ++++|...|++..+.. |+ +
T Consensus 85 ~-~~~~~~~~~~l~~~------~~~~~~~~~~A~~~~~~a~~~~--~~-------------------------------~ 124 (330)
T 3hym_B 85 L-YPSNPVSWFAVGCY------YLMVGHKNEHARRYLSKATTLE--KT-------------------------------Y 124 (330)
T ss_dssp H-CTTSTHHHHHHHHH------HHHSCSCHHHHHHHHHHHHTTC--TT-------------------------------C
T ss_pred h-CcCCHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHHhC--Cc-------------------------------c
Confidence 3 22255667777777 88899 9999999999887642 22 1
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~ 430 (732)
...|.. +...|...|++++|.+.|++..... +.+..++..+...|...|++++|.+.+++..+.. +.+...|..+..
T Consensus 125 ~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 201 (330)
T 3hym_B 125 GPAWIA-YGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGV 201 (330)
T ss_dssp THHHHH-HHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 223344 7788999999999999999998764 3345677779999999999999999999988763 345788899999
Q ss_pred HHHhcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 431 VFCNNGDVDKACSVEEHMLEHG--------VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~g--------v~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|...|++++|...+++..+.. ...+...|..+...|.+.|++++|...|++..+.
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999999999999999987642 1334578899999999999999999999998876
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.08 E-value=5.6e-09 Score=109.26 Aligned_cols=217 Identities=10% Similarity=-0.012 Sum_probs=107.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCC
Q 004743 200 MCSKRGDVMGAIRLYDKAQREGIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN 277 (732)
Q Consensus 200 a~~k~g~~~~A~~lf~~M~~~Gi~pd~--~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d 277 (732)
...-.|++..|+..++... ...|+. ...-.+..+|. ..|+.+.|...+. .. ..++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~--~~~p~~~~e~~~~l~r~yi----------~~g~~~~al~~~~-------~~----~~~~ 64 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVK--PSSPERDVERDVFLYRAYL----------AQRKYGVVLDEIK-------PS----SAPE 64 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSC--CCSHHHHHHHHHHHHHHHH----------HTTCHHHHHHHSC-------TT----SCHH
T ss_pred HHHHHHHHHHHHHHHHhcc--cCCchhhHHHHHHHHHHHH----------HCCCHHHHHHHhc-------cc----CChh
Confidence 3344566666666555432 122332 22333445555 5566666665553 10 1113
Q ss_pred ccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHH
Q 004743 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (732)
Q Consensus 278 ~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (732)
..++..+... ++..++.++|.+.++++...++.|+...+. ..
T Consensus 65 ~~a~~~la~~------~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~--------------------------------~~ 106 (291)
T 3mkr_A 65 LQAVRMFAEY------LASHSRRDAIVAELDREMSRSVDVTNTTFL--------------------------------LM 106 (291)
T ss_dssp HHHHHHHHHH------HHCSTTHHHHHHHHHHHHHSCCCCSCHHHH--------------------------------HH
T ss_pred HHHHHHHHHH------HcCCCcHHHHHHHHHHHHhcccCCCCHHHH--------------------------------HH
Confidence 3345555555 666666666666666666655445443331 11
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH---HHHHHHHHh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY---GPALSVFCN 434 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty---~~lI~~~~~ 434 (732)
+-..|.+.|++++|.+.+++ +.+...+..+...|.+.|++++|.+.|+++.+.. |+...+ ...+..+..
T Consensus 107 la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~ 178 (291)
T 3mkr_A 107 AASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAG 178 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhC
Confidence 33445555555555555554 3445555555555555555555555555555442 332111 112222223
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|+.++|..+|+++.+. ...+...|+.+-.++.+.|++++|...|++....
T Consensus 179 ~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp TTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35555555555555544 2334455555555555555555555555554443
No 26
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.08 E-value=5.4e-08 Score=102.44 Aligned_cols=256 Identities=9% Similarity=0.000 Sum_probs=158.7
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
....++..+|...|+...+.. +.+...|..+-..+...|++++|+..|+++.+.. +-+...|..+-..|.
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~-- 82 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL-- 82 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred HHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH--
Confidence 446789999999999986542 2345788999999999999999999999999763 235678888888888
Q ss_pred ccCCcccCCCCChhhHHHHhhhccccchhhcccCCC---CCccccccc------------cccccccccccccCChhHHH
Q 004743 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM---DNNGQLDYG------------SSPMIDKLESNSSYRFDDLD 304 (732)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~---~d~~tyn~L------------I~~~~~~~~~~~~g~~~~A~ 304 (732)
..|+.++|...|. +.... .. .+...+..+ ... +...|++++|.
T Consensus 83 --------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~~~A~ 140 (359)
T 3ieg_A 83 --------KQGKLDEAEDDFK-------KVLKS-NPSEQEEKEAESQLVKADEMQRLRSQALD------AFDGADYTAAI 140 (359)
T ss_dssp --------HHTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTCHHHHH
T ss_pred --------HcCChHHHHHHHH-------HHHhc-CCcccChHHHHHHHHHHHHHHHHHHHHHH------HHHccCHHHHH
Confidence 7899999999995 33332 22 122223333 344 88899999999
Q ss_pred HHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCC
Q 004743 305 STFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP 384 (732)
Q Consensus 305 ~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~ 384 (732)
.+|+++.+.. |+.. ..+.. +...|.+.|++++|.+.+++..... +
T Consensus 141 ~~~~~~~~~~--~~~~-------------------------------~~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~-~ 185 (359)
T 3ieg_A 141 TFLDKILEVC--VWDA-------------------------------ELREL-RAECFIKEGEPRKAISDLKAASKLK-S 185 (359)
T ss_dssp HHHHHHHHHC--TTCH-------------------------------HHHHH-HHHHHHHTTCHHHHHHHHHHHHTTC-S
T ss_pred HHHHHHHHhC--CCch-------------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 9999987753 2211 11222 4455555666666666666655442 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHH------------HHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYG------------PALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~------------~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
.+..+|..+...|...|++++|...|++..+.. |+ ...+. .+...+.+.|++++|.+.++++.+.
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345556666666666666666666666555431 22 11111 1133455566666666666655543
Q ss_pred CCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 452 GVYPEEP-----ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 452 gv~pd~~-----ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
. |+.. .|..+-..|.+.|++++|...+++..+.
T Consensus 264 ~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 264 E--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp C--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2 2211 1233445555666666666666655554
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.04 E-value=1e-08 Score=107.32 Aligned_cols=221 Identities=12% Similarity=-0.015 Sum_probs=123.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCC
Q 004743 195 RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (732)
Q Consensus 195 n~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g 274 (732)
-.+..+|...|+++.|+..++. .-.|+..++..+...+. ..|+.++|+..+. ++... +
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~----------~~~~~~~A~~~l~-------~ll~~-~ 95 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLA----------SHSRRDAIVAELD-------REMSR-S 95 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHH----------CSTTHHHHHHHHH-------HHHHS-C
T ss_pred HHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHc----------CCCcHHHHHHHHH-------HHHhc-c
Confidence 3345566666666666654433 12344555555555555 5555666666663 33322 2
Q ss_pred C-C-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChh
Q 004743 275 M-D-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (732)
Q Consensus 275 ~-~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~ 352 (732)
+ + +...+..+-.. +...|++++|...|++ ..+...
T Consensus 96 ~~P~~~~~~~~la~~------~~~~g~~~~Al~~l~~------~~~~~~------------------------------- 132 (291)
T 3mkr_A 96 VDVTNTTFLLMAASI------YFYDQNPDAALRTLHQ------GDSLEC------------------------------- 132 (291)
T ss_dssp CCCSCHHHHHHHHHH------HHHTTCHHHHHHHHTT------CCSHHH-------------------------------
T ss_pred cCCCCHHHHHHHHHH------HHHCCCHHHHHHHHhC------CCCHHH-------------------------------
Confidence 1 2 22223333344 5666666666666654 111111
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL---TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty---~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI 429 (732)
+.. +...|.+.|++++|.+.|+++.... |+...+ .+++..+...|++++|..+|+++.+. .+.+...|+.+-
T Consensus 133 -~~~-l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la 207 (291)
T 3mkr_A 133 -MAM-TVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQA 207 (291)
T ss_dssp -HHH-HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHH
T ss_pred -HHH-HHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHH
Confidence 223 5566677777777777777776653 443211 12233333456777777777777665 344566677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhc
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR-VYYLLHKLRTS 486 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~-A~~l~~~M~~~ 486 (732)
.++.+.|++++|.+.|++..+.. .-+..++..++..+...|+.++ +.++++++.+.
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 77777777777777777766543 2245566666667777777654 45666666654
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.98 E-value=1.9e-08 Score=100.83 Aligned_cols=225 Identities=12% Similarity=0.009 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
..|..+-..+.+.|++++|+.+|+++.+.. .+...|..+-..|. ..|++++|...+. +...
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~a~~ 66 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEY----------EKGEYETAISTLN-------DAVE 66 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHH
Confidence 578888899999999999999999999887 78888999998998 8899999999995 2222
Q ss_pred c-CCCC-C----ccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhcc
Q 004743 272 S-RDMD-N----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (732)
Q Consensus 272 ~-~g~~-d----~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~ 345 (732)
. .... + ...|..+-.. +...|++++|...|++..... |+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~~-------------------------- 112 (258)
T 3uq3_A 67 QGREMRADYKVISKSFARIGNA------YHKLGDLKKTIEYYQKSLTEH--RTA-------------------------- 112 (258)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--CCH--------------------------
T ss_pred hCcccccchHHHHHHHHHHHHH------HHHcccHHHHHHHHHHHHhcC--chh--------------------------
Confidence 1 0110 1 3557778788 999999999999999887642 221
Q ss_pred CCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 004743 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 346 g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
..+.+.|++++|.+.++++.... +.+...|..+...+...|++++|...+++..+.. +.+...|
T Consensus 113 --------------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 176 (258)
T 3uq3_A 113 --------------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGY 176 (258)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred --------------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHH
Confidence 23456688999999999988753 2355778899999999999999999999988763 3457888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..+-..|.+.|++++|...++...+.. ..+...|..+-..|.+.|+.++|...|++..+.
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999998764 345788899999999999999999999988665
No 29
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.97 E-value=2.3e-07 Score=97.64 Aligned_cols=257 Identities=7% Similarity=-0.079 Sum_probs=196.1
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH--
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL----GQYHYNVL-- 232 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~p----d~~tyn~L-- 232 (732)
.....++..+|...|+...+.. +.+...|..+-..+.+.|++++|+..|+++.+. .| +...+..+
T Consensus 46 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~ 116 (359)
T 3ieg_A 46 VFLAMGKSKAALPDLTKVIALK-------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVK 116 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHH
Confidence 3446789999999999986542 124478999999999999999999999999864 35 33344333
Q ss_pred ----------HHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhH
Q 004743 233 ----------LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDD 302 (732)
Q Consensus 233 ----------L~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~ 302 (732)
...+. ..|++++|...+. ++.+. ...+...|..+-.. +...|++++
T Consensus 117 ~~~~~~~~~~a~~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~ 172 (359)
T 3ieg_A 117 ADEMQRLRSQALDAF----------DGADYTAAITFLD-------KILEV-CVWDAELRELRAEC------FIKEGEPRK 172 (359)
T ss_dssp HHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHH
T ss_pred HHHHHHHHHHHHHHH----------HccCHHHHHHHHH-------HHHHh-CCCchHHHHHHHHH------HHHCCCHHH
Confidence 24455 7799999999995 44332 22255567777777 999999999
Q ss_pred HHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCC
Q 004743 303 LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (732)
Q Consensus 303 A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (732)
|...|++..+.. |+ +...|.. +...|...|++++|.+.|++.....
T Consensus 173 A~~~~~~~~~~~--~~-------------------------------~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 173 AISDLKAASKLK--SD-------------------------------NTEAFYK-ISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHHHHTTC--SC-------------------------------CHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC--CC-------------------------------CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999887652 22 2223444 7788999999999999999988753
Q ss_pred CCCCHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCChHHHHHHH
Q 004743 383 VPMNEASLTA------------VGRMAMSMGDGDMAFDMVKRMKSLGINPRL-----RSYGPALSVFCNNGDVDKACSVE 445 (732)
Q Consensus 383 i~pd~~ty~~------------LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-----~ty~~lI~~~~~~g~~~~A~~l~ 445 (732)
+.+...+.. +...+.+.|++++|...+++..+.. |+. ..|..+-..|.+.|+.++|.+.+
T Consensus 219 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 219 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 233344432 3566889999999999999988753 442 23445678899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 446 ~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+...+.. ..+...|..+-..|.+.|++++|...|++..+.
T Consensus 296 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 296 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9998763 337889999999999999999999999999876
No 30
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.94 E-value=1.4e-07 Score=105.83 Aligned_cols=292 Identities=11% Similarity=-0.042 Sum_probs=166.1
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
...+.++.++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.|+++.+.. +.+...+..+-..+.
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~- 104 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD-------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE- 104 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH-
Confidence 3457789999999999986642 2356889999999999999999999999999764 345778888888888
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcc---------------------------------------
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG--------------------------------------- 279 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~--------------------------------------- 279 (732)
..|+.++|...|... ....+..+..
T Consensus 105 ---------~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 105 ---------SLGNFTDAMFDLSVL-------SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp ---------HHTCHHHHHHHHHHH-------C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred ---------HcCCHHHHHHHHHHH-------hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence 778999999887421 1100000000
Q ss_pred -----------------------cccccccccccccccc--------ccCChhHHHHHHHHHHHcCCCCCccc-------
Q 004743 280 -----------------------QLDYGSSPMIDKLESN--------SSYRFDDLDSTFNEKENLGQFSNGHM------- 321 (732)
Q Consensus 280 -----------------------tyn~LI~~~~~~~~~~--------~~g~~~~A~~lf~eM~~~gi~Pd~~t------- 321 (732)
.+..+..+ ....+. ..|++++|..+|+++.+. .|+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~ 244 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDA--LQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAAL 244 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCSSCSSHHHHHHH--HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHhhccccccHHHHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHH
Confidence 00001111 000011 114788899999888765 344321
Q ss_pred -cc-hh--hhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004743 322 -KL-NS--QLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (732)
Q Consensus 322 -y~-~~--~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~ 397 (732)
+. .+ ....+....|...+...... .|+...|.. +-..|.+.|++++|.+.|++..... +.+..+|..+...+
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIF-LALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHH-HHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHH-HHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHH
Confidence 11 00 00001112333334443332 344444444 5555666666666666666665543 23455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004743 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (732)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~ 477 (732)
...|++++|...+++..+.. +-+...|..+-..|...|++++|.++++++.+.. ..+...|..+...|...|++++|.
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHH
Confidence 66666666666666655542 1234455556666666666666666666665543 223445555666666666666666
Q ss_pred HHHHHHHh
Q 004743 478 YLLHKLRT 485 (732)
Q Consensus 478 ~l~~~M~~ 485 (732)
..|++..+
T Consensus 399 ~~~~~a~~ 406 (537)
T 3fp2_A 399 KQYDIAKR 406 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.92 E-value=9.1e-08 Score=93.72 Aligned_cols=202 Identities=9% Similarity=-0.019 Sum_probs=138.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhh
Q 004743 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (732)
Q Consensus 190 ~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em 269 (732)
+...|..+...+...|++++|+++|+.+.+.. +.+...|..+...|. ..|+.++|...+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~--------- 66 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQ----------YLKVNDKAQESFR--------- 66 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH---------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH----------HcCChHHHHHHHH---------
Confidence 34678888999999999999999999998753 234666666666666 5566666666663
Q ss_pred cccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCC-ccccchhhhhhccccccCCCchhhhccCCC
Q 004743 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (732)
Q Consensus 270 ~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd-~~ty~~~~li~~~~~~a~~~~~~m~~~g~~ 348 (732)
+..+.. |+ ..++.
T Consensus 67 ---------------------------------------~a~~~~--~~~~~~~~------------------------- 80 (225)
T 2vq2_A 67 ---------------------------------------QALSIK--PDSAEINN------------------------- 80 (225)
T ss_dssp ---------------------------------------HHHHHC--TTCHHHHH-------------------------
T ss_pred ---------------------------------------HHHHhC--CCChHHHH-------------------------
Confidence 332221 22 11221
Q ss_pred CChhhhHHHHHHHHHhc-cCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 004743 349 IDNQDADEIRLSEDAKK-YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (732)
Q Consensus 349 pd~~tyn~~lI~~~~k~-g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~ 426 (732)
. +...|... |++++|.+.|+++...+..|+ ...|..+...+...|++++|...++++.+.. +.+...+.
T Consensus 81 -------~-l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 151 (225)
T 2vq2_A 81 -------N-YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFK 151 (225)
T ss_dssp -------H-HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred -------H-HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHH
Confidence 2 55667777 788888888877776333333 5667777777888888888888887776652 22466777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+...|.+.|+.++|.++++.+.+..-..+...+..+...+...|+.++|..+++.+...
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777778888888888888887776542145666777777777888888888888877654
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.91 E-value=8.1e-08 Score=96.56 Aligned_cols=200 Identities=9% Similarity=-0.029 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhc
Q 004743 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (732)
Q Consensus 191 ~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~ 270 (732)
...|..+...+...|++++|+++|+++.+.. +.+...+..+...|. ..|+.++|...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~----------~~~~~~~A~~~~----------- 94 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQ----------TEMEPKLADEEY----------- 94 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHH----------HcCCHHHHHHHH-----------
Confidence 3677888889999999999999999998753 334566666666665 455555555555
Q ss_pred ccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCC-ccccchhhhhhccccccCCCchhhhccCCCC
Q 004743 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (732)
Q Consensus 271 ~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd-~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p 349 (732)
++..+.. |+ ...+
T Consensus 95 -------------------------------------~~a~~~~--~~~~~~~--------------------------- 108 (252)
T 2ho1_A 95 -------------------------------------RKALASD--SRNARVL--------------------------- 108 (252)
T ss_dssp -------------------------------------HHHHHHC--TTCHHHH---------------------------
T ss_pred -------------------------------------HHHHHHC--cCcHHHH---------------------------
Confidence 3333321 22 1112
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 428 (732)
.. +...|.+.|++++|.++|+++...+..| +...|..+...|...|++++|.+.+++..+.. +.+...|..+
T Consensus 109 -----~~-la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 181 (252)
T 2ho1_A 109 -----NN-YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEM 181 (252)
T ss_dssp -----HH-HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHH
T ss_pred -----HH-HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHH
Confidence 12 5566777888888888888887743444 45677778888888888888888888877653 2346777788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
...|...|+.++|..+++.+.+.. ..+...+..+...+.+.|+.++|..+++++.+.
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888888888888888877643 345667777888888888888888888888776
No 33
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.88 E-value=1.4e-07 Score=94.83 Aligned_cols=179 Identities=8% Similarity=-0.052 Sum_probs=139.7
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCc-cccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~-~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~ 372 (732)
+...|++++|..+|+++.+.. |+. ..+. . +...|.+.|++++|.
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~--~~~~~~~~--------------------------------~-la~~~~~~~~~~~A~ 91 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEID--PSSADAHA--------------------------------A-LAVVFQTEMEPKLAD 91 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHC--TTCHHHHH--------------------------------H-HHHHHHHTTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC--CChHHHHH--------------------------------H-HHHHHHHcCCHHHHH
Confidence 777888888888888887653 332 2221 3 667888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 373 ~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
++|+++.... +.+...|..+...|...|++++|.++++++...+..| +...|..+...|...|++++|.+.+++..+.
T Consensus 92 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 92 EEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999988764 3478899999999999999999999999988744555 4567888889999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh-hHHHH-HHHHHhchHHHHhc
Q 004743 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-STADV-IAKWFNSKEAARLG 511 (732)
Q Consensus 452 gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p-~t~~~-I~~~~~~~~~~~a~ 511 (732)
. ..+...+..+...|.+.|+.++|..+|++..+. .+.. ..+.. ...+...+...++.
T Consensus 171 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~ 229 (252)
T 2ho1_A 171 N-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAA 229 (252)
T ss_dssp C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHH
Confidence 4 345788999999999999999999999998875 4333 34433 44444555554443
No 34
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.88 E-value=2.2e-07 Score=104.27 Aligned_cols=256 Identities=11% Similarity=0.022 Sum_probs=196.8
Q ss_pred cCCchHHHHHHHHhhcCCCCCCCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 164 TNDSGQYKVRGITDEKGSKKSKKDRSE-----QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~~~~p~-----~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
++..+|..+|+.+.+.. |+ .++ ..+|..+-..+...|++++|+..|+.+... .|+...|..+-..|.
T Consensus 216 ~~~~~A~~~~~~~l~~~--p~---~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~- 287 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN--TV---DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLA- 287 (537)
T ss_dssp HHHHHHHHHHHHHHC----CC---CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHC--CC---cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHH-
Confidence 46788999999885431 11 111 235777778889999999999999999975 466777877777777
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd 318 (732)
..|++++|...+. +.... ...+..+|..+... +...|++++|...|++..+.. |+
T Consensus 288 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~ 342 (537)
T 3fp2_A 288 ---------DKENSQEFFKFFQ-------KAVDL-NPEYPPTYYHRGQM------YFILQDYKNAKEDFQKAQSLN--PE 342 (537)
T ss_dssp ---------CSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred ---------HhcCHHHHHHHHH-------HHhcc-CCCCHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHhC--CC
Confidence 8899999999995 34332 22255568888888 999999999999999887753 22
Q ss_pred ccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004743 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (732)
Q Consensus 319 ~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~ 398 (732)
+...|.. +...|.+.|++++|.++|+++.... +.+..+|..+...|.
T Consensus 343 -------------------------------~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 343 -------------------------------NVYPYIQ-LACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp -------------------------------CSHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred -------------------------------CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 1123334 7788999999999999999998764 445678999999999
Q ss_pred hcCCHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 399 SMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNN----------GDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g-----~~pd~~ty~~lI~~~~~~----------g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
..|++++|...|++..+.. .......+..+-..+... |++++|...|+...+.. ..+...|..+
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 468 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGL 468 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 9999999999999987652 111122233444567777 99999999999998764 3457889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 004743 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 464 i~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
...|.+.|+.++|...|++..+.
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999998876
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.84 E-value=1.9e-07 Score=91.39 Aligned_cols=156 Identities=10% Similarity=0.012 Sum_probs=129.7
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCc-cccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~-~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~ 372 (732)
+...|++++|..+|++..+.. |+. ..+ .. +...|...|++++|.
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~--------------------------------~~-l~~~~~~~~~~~~A~ 62 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSD--PKNELAW--------------------------------LV-RAEIYQYLKVNDKAQ 62 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHH--------------------------------HH-HHHHHHHTTCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC--ccchHHH--------------------------------HH-HHHHHHHcCChHHHH
Confidence 778888899998888887753 332 222 13 667888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 373 EIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 373 ~lf~~M~~~gi~pd~~ty~~LI~~~~~~-g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
+.|++..... +.+..+|..+...|... |++++|..+++++.+.+..|+ ...|..+...+...|++++|.+.++++.+
T Consensus 63 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 63 ESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998754 44778999999999999 999999999999988434444 57788889999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.. ..+...+..+...|.+.|+.++|..++++....
T Consensus 142 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 142 AQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 64 335788899999999999999999999998776
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.77 E-value=4.9e-08 Score=99.17 Aligned_cols=85 Identities=11% Similarity=-0.074 Sum_probs=62.4
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~ 241 (732)
..++.++|.+.|+++.+..... .+.+..+|..+...+...|++++|+..|+++.... +.+...|..+-..|.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~---- 88 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALT---DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLT---- 88 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH----
T ss_pred ccchHHHHHHHHHHHHhccccc---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHH----
Confidence 4467788999999986642110 11245788899999999999999999999998764 235677777777777
Q ss_pred CCcccCCCCChhhHHHHhh
Q 004743 242 GVVKPAKSGSGMRTLDTFE 260 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~ 260 (732)
..|++++|...|.
T Consensus 89 ------~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 89 ------QAGNFDAAYEAFD 101 (275)
T ss_dssp ------HTTCHHHHHHHHH
T ss_pred ------HccCHHHHHHHHH
Confidence 6677777777764
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.73 E-value=2.1e-07 Score=92.46 Aligned_cols=188 Identities=11% Similarity=0.050 Sum_probs=145.6
Q ss_pred CCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhh
Q 004743 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (732)
Q Consensus 248 k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~l 327 (732)
..|++++|...|. +.... ...+...|..+... +...|++++|...|++..+.. |+
T Consensus 35 ~~~~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~--------- 89 (243)
T 2q7f_A 35 EFGDYEKAAEAFT-------KAIEE-NKEDAIPYINFANL------LSSVNELERALAFYDKALELD--SS--------- 89 (243)
T ss_dssp -------CCTTHH-------HHHTT-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TT---------
T ss_pred HhhCHHHHHHHHH-------HHHHh-CcccHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcC--Cc---------
Confidence 7788999999885 44332 22255567777777 889999999999999887652 21
Q ss_pred hhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004743 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407 (732)
Q Consensus 328 i~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~ 407 (732)
+...|.. +...|.+.|++++|.+.|+++.+.. +.+...|..+...+...|++++|.
T Consensus 90 ----------------------~~~~~~~-la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 90 ----------------------AATAYYG-AGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp ----------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred ----------------------chHHHHH-HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 2223334 7788889999999999999988764 456788999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 408 ~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+++++.+.. +.+...|..+...|.+.|+.++|.+.++++.+.. ..+..+|..+...|.+.|+.++|...|++..+.
T Consensus 146 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 146 PYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999988762 3467788889999999999999999999988764 345778999999999999999999999998776
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.72 E-value=6.2e-07 Score=89.68 Aligned_cols=216 Identities=10% Similarity=0.026 Sum_probs=169.8
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHH
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IKLG----QYHYNVLL 233 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~G--i~pd----~~tyn~LL 233 (732)
....++.++|...|++..+.. .+. ..|..+-..+...|++++|++.|+...... ..|+ ..+|..+-
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~--~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELH--KDI------TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--CCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhh--ccH------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 446789999999999987764 333 789999999999999999999999988532 2233 47788888
Q ss_pred HHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHc
Q 004743 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (732)
Q Consensus 234 ~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (732)
..|. +.|++++|...|. +.... . +. -.. +...|++++|...++++...
T Consensus 87 ~~~~----------~~~~~~~A~~~~~-------~a~~~-~--~~------~~~------~~~~~~~~~a~~~~~~~~~~ 134 (258)
T 3uq3_A 87 NAYH----------KLGDLKKTIEYYQ-------KSLTE-H--RT------ADI------LTKLRNAEKELKKAEAEAYV 134 (258)
T ss_dssp HHHH----------HTTCHHHHHHHHH-------HHHHH-C--CC------HHH------HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH----------HcccHHHHHHHHH-------HHHhc-C--ch------hHH------HHHHhHHHHHHHHHHHHHHc
Confidence 8888 7899999999995 33321 0 00 122 67778899999999888764
Q ss_pred CCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004743 314 GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAV 393 (732)
Q Consensus 314 gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~L 393 (732)
. |+ +...|.. +-..+...|++++|.+.|++..... +.+..+|..+
T Consensus 135 ~--~~-------------------------------~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 179 (258)
T 3uq3_A 135 N--PE-------------------------------KAEEARL-EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNR 179 (258)
T ss_dssp C--HH-------------------------------HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred C--cc-------------------------------hHHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHH
Confidence 1 21 1223334 7788899999999999999998764 4468899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
...|...|++++|...+++..+.. +.+...|..+-..|.+.|+.++|.+.++...+.
T Consensus 180 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 180 AAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999988763 334778888999999999999999999987654
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.70 E-value=1.6e-07 Score=93.35 Aligned_cols=203 Identities=12% Similarity=0.029 Sum_probs=145.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchh
Q 004743 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (732)
Q Consensus 189 p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~e 268 (732)
.....|..+-..+.+.|++++|+.+|+++.+.. +.+...+..+...|. +.|+.++|...+. +
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~----------~~~~~~~A~~~~~-------~ 82 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLS----------SVNELERALAFYD-------K 82 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------H
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHHH-------H
Confidence 344678888888999999999999999998643 345778888888888 7899999999995 3
Q ss_pred hcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCC
Q 004743 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (732)
Q Consensus 269 m~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~ 348 (732)
.... ...+...|..+... +...|++++|..+|++..+.. |+
T Consensus 83 ~~~~-~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~------------------------------ 123 (243)
T 2q7f_A 83 ALEL-DSSAATAYYGAGNV------YVVKEMYKEAKDMFEKALRAG--ME------------------------------ 123 (243)
T ss_dssp HHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHT--CC------------------------------
T ss_pred HHHc-CCcchHHHHHHHHH------HHHhccHHHHHHHHHHHHHhC--CC------------------------------
Confidence 3332 22255567777777 899999999999999887753 21
Q ss_pred CChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004743 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (732)
Q Consensus 349 pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 428 (732)
+...|.. +...|.+.|++++|.+.++++.... +.+...+..+...+...|++++|.+.|++..+.. ..+..+|..+
T Consensus 124 -~~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 199 (243)
T 2q7f_A 124 -NGDLFYM-LGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNA 199 (243)
T ss_dssp -SHHHHHH-HHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred -CHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 1223334 7788899999999999999988753 3467889999999999999999999999988763 3457788999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC
Q 004743 429 LSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
...|.+.|+.++|.+.++.+.+..
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999998753
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.69 E-value=1.6e-07 Score=95.27 Aligned_cols=222 Identities=10% Similarity=-0.087 Sum_probs=169.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcc
Q 004743 203 KRGDVMGAIRLYDKAQREGIK---LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (732)
Q Consensus 203 k~g~~~~A~~lf~~M~~~Gi~---pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~ 279 (732)
..|++++|+..|+++.+.... .+..+|..+-..|. ..|++++|...|. +.... ...+..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~al~~-~~~~~~ 78 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD----------SLGLRALARNDFS-------QALAI-RPDMPE 78 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CCCCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHHc-CCCcHH
Confidence 458899999999999976422 13567777777777 7899999999995 44332 222556
Q ss_pred ccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHH
Q 004743 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (732)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (732)
.|..+-.. +...|++++|...|++..+.. |+ +...|.. +-
T Consensus 79 ~~~~la~~------~~~~~~~~~A~~~~~~al~~~--~~-------------------------------~~~~~~~-la 118 (275)
T 1xnf_A 79 VFNYLGIY------LTQAGNFDAAYEAFDSVLELD--PT-------------------------------YNYAHLN-RG 118 (275)
T ss_dssp HHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TT-------------------------------CTHHHHH-HH
T ss_pred HHHHHHHH------HHHccCHHHHHHHHHHHHhcC--cc-------------------------------ccHHHHH-HH
Confidence 68888888 999999999999999887752 22 1223445 77
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~ 439 (732)
..|.+.|++++|.+.|+++... .|+...+..++..+...|+.++|...+.+.... ..++...+. ++..+...++.+
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~ 194 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGWN-IVEFYLGNISEQ 194 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHHH-HHHHHTTSSCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHHH-HHHHHHHhcCHH
Confidence 8899999999999999999875 355555556666667889999999999887765 334444444 777788889999
Q ss_pred HHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 440 KACSVEEHMLEHGVY--P-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 440 ~A~~l~~~M~~~gv~--p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+|.+.+......... | +...|..+-..|.+.|+.++|...|++....
T Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 999999887644211 1 1577888999999999999999999999876
No 41
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.68 E-value=6.6e-07 Score=92.24 Aligned_cols=246 Identities=7% Similarity=-0.051 Sum_probs=141.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhh
Q 004743 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-------GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEV 261 (732)
Q Consensus 189 p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~-------Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~ 261 (732)
.+..+|..+-..+...|++++|+.+|+++.+. .-......+..+-..|. ..|++++|...+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~----------~~g~~~~A~~~~~- 93 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR----------DQNKYKDAANLLN- 93 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----------HCCCHHHHHHHHH-
Confidence 34578889999999999999999999999863 22233456666666676 6788888888884
Q ss_pred ccccchhhccc------CCCC-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccc
Q 004743 262 STMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNL 334 (732)
Q Consensus 262 ~~~~s~em~~~------~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~ 334 (732)
+.... .... ....|..+-.. +...|++++|...|++..+...
T Consensus 94 ------~al~~~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~a~~~~~------------------- 142 (311)
T 3nf1_A 94 ------DALAIREKTLGKDHPAVAATLNNLAVL------YGKRGKYKEAEPLCKRALEIRE------------------- 142 (311)
T ss_dssp ------HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHHH-------------------
T ss_pred ------HHHHHHHHHhCCCChHHHHHHHHHHHH------HHHcCcHHHHHHHHHHHHHHHH-------------------
Confidence 22211 0111 23346666666 7777777777777776654310
Q ss_pred cCCCchhhhccCCCC-ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 004743 335 ERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMA 406 (732)
Q Consensus 335 a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~------gi~p-d~~ty~~LI~~~~~~g~~~~A 406 (732)
... .+-.| ....+.. +-..|...|++++|.++|++.... +-.| ...++..+...|...|++++|
T Consensus 143 ------~~~-~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 214 (311)
T 3nf1_A 143 ------KVL-GKDHPDVAKQLNN-LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214 (311)
T ss_dssp ------HHH-CTTCHHHHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ------Hhc-CCCChHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 000 00011 1233444 666777777777777777776653 2122 234667777777777777777
Q ss_pred HHHHHHHHHc-------CCCCChhhHHHHH-------HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004743 407 FDMVKRMKSL-------GINPRLRSYGPAL-------SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (732)
Q Consensus 407 ~~l~~~M~~~-------g~~pd~~ty~~lI-------~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (732)
.+.+++..+. ...+........+ ..+...+.+.+|...+....... ..+..+|..+...|.+.|+
T Consensus 215 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 293 (311)
T 3nf1_A 215 ETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGK 293 (311)
T ss_dssp HHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCC
Confidence 7777776643 1222222222222 22222334444444444443221 2234667888889999999
Q ss_pred hHHHHHHHHHHHh
Q 004743 473 GDRVYYLLHKLRT 485 (732)
Q Consensus 473 ~~~A~~l~~~M~~ 485 (732)
.++|..+|++..+
T Consensus 294 ~~~A~~~~~~al~ 306 (311)
T 3nf1_A 294 FEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.67 E-value=1e-05 Score=82.47 Aligned_cols=226 Identities=12% Similarity=-0.009 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhc
Q 004743 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (732)
Q Consensus 191 ~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~ 270 (732)
..++..+=..|.+.|++++|++.|.+..+.+ +...+..|-..|.... ...|+.++|...|. +..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~------~~~~~~~~A~~~~~-------~a~ 69 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ------GVEKNLKKAASFYA-------KAC 69 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS------SSCCCHHHHHHHHH-------HHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC------CcCCCHHHHHHHHH-------HHH
Confidence 3567777788889999999999999999843 4566666666666200 02788999999995 333
Q ss_pred ccCCCCCccccccccccccccccccc----cCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccC
Q 004743 271 DSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (732)
Q Consensus 271 ~~~g~~d~~tyn~LI~~~~~~~~~~~----~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g 346 (732)
+. + +...+..|-.. +.. .+++++|...|++..+.+ +..
T Consensus 70 ~~-~--~~~a~~~lg~~------~~~g~~~~~~~~~A~~~~~~a~~~~---~~~-------------------------- 111 (273)
T 1ouv_A 70 DL-N--YSNGCHLLGNL------YYSGQGVSQNTNKALQYYSKACDLK---YAE-------------------------- 111 (273)
T ss_dssp HT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHTT---CHH--------------------------
T ss_pred HC-C--CHHHHHHHHHH------HhCCCCcccCHHHHHHHHHHHHHcC---Ccc--------------------------
Confidence 32 2 34445555455 666 899999999998877654 222
Q ss_pred CCCChhhhHHHHHHHHHh----ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 004743 347 WSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGI 418 (732)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~g~ 418 (732)
.+.. +-..|.+ .+++++|.+.|++..+.+ +...+..+-..|.. .++.++|...|++..+.+
T Consensus 112 ------a~~~-lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 180 (273)
T 1ouv_A 112 ------GCAS-LGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK- 180 (273)
T ss_dssp ------HHHH-HHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ------HHHH-HHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 2223 5556666 899999999999998876 56778888888888 899999999999988774
Q ss_pred CCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 004743 419 NPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 419 ~pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~----~g~~~~A~~l~~~M~~~ 486 (732)
+...+..+-..|.. .++.++|.+.|+...+.+ +...+..|-..|.+ .++.++|...|++..+.
T Consensus 181 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 181 --DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp --CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 45667777788888 999999999999988875 36677777788888 89999999999988776
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.65 E-value=6.5e-07 Score=88.83 Aligned_cols=200 Identities=10% Similarity=-0.054 Sum_probs=143.8
Q ss_pred CCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhH
Q 004743 223 KLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDD 302 (732)
Q Consensus 223 ~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~ 302 (732)
+++...+..+-..+. +.|++++|...|. +.... ...+...|..+-.. +.+.|++++
T Consensus 2 p~~~~~~~~lg~~~~----------~~g~~~~A~~~~~-------~al~~-~p~~~~a~~~lg~~------~~~~g~~~~ 57 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLY----------ALGRYDAALTLFE-------RALKE-NPQDPEALYWLART------QLKLGLVNP 57 (217)
T ss_dssp --CCHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHTT-SSSCHHHHHHHHHH------HHHTTCHHH
T ss_pred CCcHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHH
Confidence 345566777777777 7899999999995 33332 22255557777777 899999999
Q ss_pred HHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhc-----------cCHHHH
Q 004743 303 LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK-----------YAFQRG 371 (732)
Q Consensus 303 A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~-----------g~~~~A 371 (732)
|...|++..+.. |+.. ..|.. +-..|.+. |++++|
T Consensus 58 A~~~~~~al~~~--P~~~-------------------------------~a~~~-lg~~~~~~~~~~~~~~~~~g~~~~A 103 (217)
T 2pl2_A 58 ALENGKTLVART--PRYL-------------------------------GGYMV-LSEAYVALYRQAEDRERGKGYLEQA 103 (217)
T ss_dssp HHHHHHHHHHHC--TTCH-------------------------------HHHHH-HHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcH-------------------------------HHHHH-HHHHHHHhhhhhhhhcccccCHHHH
Confidence 999999887752 4322 12223 55566666 999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 372 ~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
...|++..+.. +-+...|..+-..|...|++++|...|++..+.. .+...+..+-..|...|++++|...|+...+.
T Consensus 104 ~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 104 LSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999988753 3357889999999999999999999999998887 78888999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 452 gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
. .-+...+..+-..+.+.|+.++|...|++..
T Consensus 181 ~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 181 A-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp S-TTCHHHHHHHHHHHTC---------------
T ss_pred C-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 4 3356778888899999999999999988764
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.59 E-value=8.2e-07 Score=88.13 Aligned_cols=199 Identities=14% Similarity=-0.043 Sum_probs=143.1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchh
Q 004743 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (732)
Q Consensus 189 p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~e 268 (732)
++...|..+-..+.+.|++++|+..|++..+.. +-+...+..+-..+. +.|+.++|...|. +
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~----------~~g~~~~A~~~~~-------~ 64 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQL----------KLGLVNPALENGK-------T 64 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------H
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------H
Confidence 444778888889999999999999999998643 335677777777777 7899999999995 3
Q ss_pred hcccCCCCCcccccccccccccccccccc-----------CChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCC
Q 004743 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSS-----------YRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG 337 (732)
Q Consensus 269 m~~~~g~~d~~tyn~LI~~~~~~~~~~~~-----------g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~ 337 (732)
..+. ...+...|..+-.. +... |++++|...|++..+. .|+.
T Consensus 65 al~~-~P~~~~a~~~lg~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~------------------ 117 (217)
T 2pl2_A 65 LVAR-TPRYLGGYMVLSEA------YVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRY------------------ 117 (217)
T ss_dssp HHHH-CTTCHHHHHHHHHH------HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTC------------------
T ss_pred HHHh-CCCcHHHHHHHHHH------HHHhhhhhhhhcccccCHHHHHHHHHHHHHh--Cccc------------------
Confidence 3332 22244456666666 7777 9999999999888765 2332
Q ss_pred CchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004743 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (732)
Q Consensus 338 ~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (732)
...|.. +-..|...|++++|.+.|++..+.. .+...+..+-.+|...|++++|...|++..+..
T Consensus 118 -------------~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 118 -------------APLHLQ-RGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp -------------HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -------------HHHHHH-HHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 222334 6677889999999999999999877 788999999999999999999999999988752
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 418 ~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
+-+...+..+-..+...|+.++|.+.|++..
T Consensus 182 -P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 182 -PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp -TTCHHHHHHHHHHHTC---------------
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 2346778888889999999999999988654
No 45
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.58 E-value=9.7e-06 Score=84.79 Aligned_cols=243 Identities=10% Similarity=0.006 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCCh-------hhHH
Q 004743 192 FQLRVELDMCSKR----GDV----MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-------MRTL 256 (732)
Q Consensus 192 ~tyn~lI~a~~k~----g~~----~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~-------~~A~ 256 (732)
..|...|+-.-+. ++. ++|+.+|++..... +-+...|..+...+...+. ...+.|++ ++|.
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~---~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSK---LLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH---HHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhch---hhhhccchhhcccchHHHH
Confidence 4566666554443 233 78999999998642 3456677777766642100 00023554 8899
Q ss_pred HHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccC
Q 004743 257 DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLER 336 (732)
Q Consensus 257 ~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~ 336 (732)
.+|. +........+...|..+... +...|++++|..+|++..+. .|+...
T Consensus 85 ~~~~-------rAl~~~~p~~~~~~~~~~~~------~~~~~~~~~A~~~~~~al~~--~p~~~~--------------- 134 (308)
T 2ond_A 85 NIYE-------RAISTLLKKNMLLYFAYADY------EESRMKYEKVHSIYNRLLAI--EDIDPT--------------- 134 (308)
T ss_dssp HHHH-------HHHTTTTTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHTS--SSSCTH---------------
T ss_pred HHHH-------HHHHHhCcccHHHHHHHHHH------HHhcCCHHHHHHHHHHHHhc--cccCcc---------------
Confidence 9985 33321011244568888888 88999999999999988763 343221
Q ss_pred CCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 004743 337 GPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM-SMGDGDMAFDMVKRMKS 415 (732)
Q Consensus 337 ~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~-~~g~~~~A~~l~~~M~~ 415 (732)
..|.. +...+.+.|++++|..+|++..+.. +++...|........ ..|+.++|..+|+...+
T Consensus 135 ---------------~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~ 197 (308)
T 2ond_A 135 ---------------LVYIQ-YMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 197 (308)
T ss_dssp ---------------HHHHH-HHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred ---------------HHHHH-HHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13445 7778888999999999999998764 344555554443322 36999999999999876
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-VYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 416 ~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g-v~p--d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
. .+-+...|..++..+.+.|+.++|..+|++..+.. +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 198 ~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 198 K-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp H-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred h-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5 22356788889999999999999999999999874 455 4678999999999999999999999998876
No 46
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.54 E-value=3.7e-06 Score=74.31 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=111.1
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004743 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (732)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~ 433 (732)
|.. +...|...|++++|..+|+++.... +.+..+|..+...+...|++++|..+++++...+ +.+...|..+...+.
T Consensus 4 ~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYN-LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 444 7788889999999999999998764 3467889999999999999999999999988764 345678888999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..|++++|.++++++.+.. ..+...+..+...+.+.|+.++|...|+++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998764 345778889999999999999999999998765
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.52 E-value=2.9e-06 Score=85.95 Aligned_cols=233 Identities=10% Similarity=-0.081 Sum_probs=173.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc
Q 004743 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (732)
Q Consensus 193 tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~ 272 (732)
.+...-..+.+.|++++|+.+|++..+.. +-+...+..+-..|. ..|++++|...+. +....
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~a~~~ 66 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYY----------ELAKYDLAQKDIE-------TYFSK 66 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHH----------HTTCHHHHHHHHH-------HHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH----------HHhhHHHHHHHHH-------HHHhc
Confidence 34455677889999999999999998753 223446777777887 7899999999995 44433
Q ss_pred CCCCCcc---ccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCC
Q 004743 273 RDMDNNG---QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (732)
Q Consensus 273 ~g~~d~~---tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p 349 (732)
.-.+.. .|..+-.. +...|++++|...|++..+.. |+
T Consensus 67 -~~~~~~~~~~~~~lg~~------~~~~~~~~~A~~~~~~a~~~~--~~------------------------------- 106 (272)
T 3u4t_A 67 -VNATKAKSADFEYYGKI------LMKKGQDSLAIQQYQAAVDRD--TT------------------------------- 106 (272)
T ss_dssp -SCTTTCCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHS--TT-------------------------------
T ss_pred -cCchhHHHHHHHHHHHH------HHHcccHHHHHHHHHHHHhcC--cc-------------------------------
Confidence 211222 26677777 899999999999999887742 22
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI 429 (732)
+...|.. +-..|.+.|++++|.+.|++..... +.+..+|..+-..+...+++++|.+.|++..+.. +.+...|..+-
T Consensus 107 ~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~ 183 (272)
T 3u4t_A 107 RLDMYGQ-IGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRA 183 (272)
T ss_dssp CTHHHHH-HHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred cHHHHHH-HHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 1223445 7788999999999999999988762 4456677777734445669999999999988762 22356777777
Q ss_pred HHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 430 SVFCNNGD---VDKACSVEEHMLEHG-VYPE------EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 430 ~~~~~~g~---~~~A~~l~~~M~~~g-v~pd------~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..+...|+ .++|...+++..+.. -.|+ ...|..|-..|.+.|+.++|...|++..+.
T Consensus 184 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78888888 888998888876542 1233 257788888899999999999999999876
No 48
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.41 E-value=3.9e-06 Score=78.91 Aligned_cols=156 Identities=16% Similarity=0.048 Sum_probs=126.3
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|+++.+. .|+ +...+.. +...|...|++++|.+
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~--~~~-------------------------------~~~~~~~-~~~~~~~~~~~~~A~~ 63 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDA--DAF-------------------------------DVDVALH-LGIAYVKTGAVDRGTE 63 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCT--TSC-------------------------------CHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh--Ccc-------------------------------ChHHHHH-HHHHHHHcCCHHHHHH
Confidence 77888999999888765432 111 2233444 7788889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv 453 (732)
.++++.... +.+...|..+...+...|++++|.+.++++... .+.+...+..+...+...|+.++|.+.+++..+..
T Consensus 64 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 140 (186)
T 3as5_A 64 LLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR- 140 (186)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-
Confidence 999988763 456788999999999999999999999998876 33467788888889999999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..+...+..+...+...|+.++|...+++..+.
T Consensus 141 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 345788889999999999999999999987654
No 49
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.40 E-value=2e-06 Score=89.06 Aligned_cols=274 Identities=11% Similarity=-0.038 Sum_probs=187.4
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV 231 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~--~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~----Gi~pd-~~tyn~ 231 (732)
.....++.++|...|++..+.. |+ .|. ...|..+-..+...|++++|++.|++.... +-.|. ..++..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVG--TE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--cc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 4557789999999999987652 11 121 367888899999999999999999987632 22222 445666
Q ss_pred HHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCC----------
Q 004743 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (732)
Q Consensus 232 LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~---------- 299 (732)
+-..|. ..|++++|...+... .++....+-. ...+|..+-.. +...|+
T Consensus 89 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~ 148 (338)
T 3ro2_A 89 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDT 148 (338)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHHHHTSSSSSCC--
T ss_pred HHHHHH----------HccCHHHHHHHHHHH----HHHHHHhcCchHHHHHHHHHHHH------HHHcCcccccchhhhh
Confidence 666666 789999999988511 1111110111 12246666666 777788
Q ss_pred ----------hhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCH
Q 004743 300 ----------FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAF 368 (732)
Q Consensus 300 ----------~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~ 368 (732)
+++|...+++....--. .+-.|. ...+.. +-..|...|++
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~----------------------------~~~~~~~~~~~~~-l~~~~~~~~~~ 199 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTA----------------------------LGDRAAQGRAFGN-LGNTHYLLGNF 199 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHH----------------------------HTCHHHHHHHHHH-HHHHHHHHTCH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHh----------------------------cCCHHHHHHHHHH-HHHHHHHhCCH
Confidence 88888888765432000 000011 123444 67888899999
Q ss_pred HHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCCh
Q 004743 369 QRGFEIYEKMCLD----EVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDV 438 (732)
Q Consensus 369 ~~A~~lf~~M~~~----gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~pd-~~ty~~lI~~~~~~g~~ 438 (732)
++|.+.+++.... +.. ....++..+...+...|++++|...+++.... +-.+. ..++..+-..|...|+.
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 9999999987642 111 11347888999999999999999999887643 11111 56777888899999999
Q ss_pred HHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 439 DKACSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 439 ~~A~~l~~~M~~~----gv~-pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
++|...+++..+. +-. ....++..+-..|.+.|++++|...+++..+.
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999887643 111 11446778889999999999999999988764
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.39 E-value=2.2e-05 Score=85.21 Aligned_cols=228 Identities=8% Similarity=-0.041 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCC-hhhHHHHhhhccccchhhc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGS-GMRTLDTFEVSTMNSTELG 270 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~-~~~A~~~~~~~~~~s~em~ 270 (732)
..|+.+-..+.+.|++++|++.|++..... +-+...|+.+-..+. ..|+ +++|+..|. +..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~----------~~g~d~~eAl~~~~-------~al 159 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLK----------SLQKDLHEEMNYIT-------AII 159 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHH----------HcccCHHHHHHHHH-------HHH
Confidence 456667777889999999999999999753 224667777777777 7786 999999995 333
Q ss_pred ccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCC
Q 004743 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (732)
Q Consensus 271 ~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd 350 (732)
.. .-.+...|+.+-.. +...|++++|...|++..+.. |+ +
T Consensus 160 ~l-~P~~~~a~~~~g~~------~~~~g~~~eAl~~~~kal~ld--P~-------------------------------~ 199 (382)
T 2h6f_A 160 EE-QPKNYQVWHHRRVL------VEWLRDPSQELEFIADILNQD--AK-------------------------------N 199 (382)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--TT-------------------------------C
T ss_pred HH-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--cc-------------------------------C
Confidence 32 22355668888777 889999999999999887752 22 2
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHcCCCCC-hh
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS-MGDGDMA-----FDMVKRMKSLGINPR-LR 423 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~-~g~~~~A-----~~l~~~M~~~g~~pd-~~ 423 (732)
...|+. +-..+.+.|++++|++.|+++.+.. +-+...|+.+-.++.. .|..++| +..+++.... .|+ ..
T Consensus 200 ~~a~~~-lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~ 275 (382)
T 2h6f_A 200 YHAWQH-RQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNES 275 (382)
T ss_dssp HHHHHH-HHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHH
T ss_pred HHHHHH-HHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHH
Confidence 334445 6777888999999999999999865 3478899999999999 6766777 4777776654 354 56
Q ss_pred hHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------ChHHHHHHHHHH
Q 004743 424 SYGPALSVFCNNG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG---------KGDRVYYLLHKL 483 (732)
Q Consensus 424 ty~~lI~~~~~~g--~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g---------~~~~A~~l~~~M 483 (732)
.|+.+-..+...| +.++|.+.+.++ ..-..+...+..|...|.+.| ..++|..+++++
T Consensus 276 a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 276 AWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 7888888888888 689999999888 333455678889999998864 358999999998
No 51
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.38 E-value=2.4e-05 Score=88.43 Aligned_cols=127 Identities=9% Similarity=-0.051 Sum_probs=81.2
Q ss_pred hhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 004743 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~ 240 (732)
.+.++...|..+|+.+.+. .+-+...|...+..+.+.|++++|..+|+++... .|+...|...+.....
T Consensus 23 ~~~~~~~~a~~~~e~al~~-------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~-- 91 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ-------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRE-- 91 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHH--
T ss_pred HHhCCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHH--
Confidence 4568899999999998543 2334578999999999999999999999999865 3787777776653321
Q ss_pred cCCcccCCCCChhhHHH----HhhhccccchhhcccCCCC--Cccccccccccc---cccccccccCChhHHHHHHHHHH
Q 004743 241 VGVVKPAKSGSGMRTLD----TFEVSTMNSTELGDSRDMD--NNGQLDYGSSPM---IDKLESNSSYRFDDLDSTFNEKE 311 (732)
Q Consensus 241 ~~~~~~~k~g~~~~A~~----~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~---~~~~~~~~~g~~~~A~~lf~eM~ 311 (732)
..|+.+.|.+ +|. ......|.. +...|...+... .....+...|+++.|..+|++..
T Consensus 92 -------~~~~~~~a~~~~~~~~~-------~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 92 -------TKGKLPSYKEKMAQAYD-------FALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp -------HTTTSTTHHHHHHHHHH-------HHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred -------HccchhhHHHHHHHHHH-------HHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 2345555544 553 222222332 223354444330 00000223678888998888877
Q ss_pred H
Q 004743 312 N 312 (732)
Q Consensus 312 ~ 312 (732)
.
T Consensus 158 ~ 158 (530)
T 2ooe_A 158 V 158 (530)
T ss_dssp T
T ss_pred h
Confidence 6
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.35 E-value=2.3e-05 Score=81.84 Aligned_cols=219 Identities=11% Similarity=-0.029 Sum_probs=162.0
Q ss_pred chHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHcCCCC-CHHHHHH
Q 004743 167 SGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCS-------KRGDV-------MGAIRLYDKAQREGIKL-GQYHYNV 231 (732)
Q Consensus 167 ~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~-------k~g~~-------~~A~~lf~~M~~~Gi~p-d~~tyn~ 231 (732)
..|..+|+..... .+-+...|..+...+. +.|++ ++|..+|++.... +.| +...|..
T Consensus 33 ~~a~~~~~~al~~-------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~ 104 (308)
T 2ond_A 33 KRVMFAYEQCLLV-------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHH-------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHH
T ss_pred HHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHH
Confidence 4577788887543 1223467777777765 45886 8999999999863 245 4568888
Q ss_pred HHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcc-ccccccccccccccccccCChhHHHHHHHHH
Q 004743 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG-QLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (732)
Q Consensus 232 LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~-tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (732)
+...+. +.|++++|..+|. +.... ...+.. .|..+... +.+.|++++|..+|++.
T Consensus 105 ~~~~~~----------~~~~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 105 YADYEE----------SRMKYEKVHSIYN-------RLLAI-EDIDPTLVYIQYMKF------ARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHH----------HTTCHHHHHHHHH-------HHHTS-SSSCTHHHHHHHHHH------HHHHHCHHHHHHHHHHH
T ss_pred HHHHHH----------hcCCHHHHHHHHH-------HHHhc-cccCccHHHHHHHHH------HHHhcCHHHHHHHHHHH
Confidence 888888 7899999999995 44432 112332 68888888 88999999999999988
Q ss_pred HHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 004743 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (732)
Q Consensus 311 ~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (732)
.+.. |+. +. .|.....-.+...|+.++|..+|++..+.. +-+...|
T Consensus 161 ~~~~--p~~--~~-----------------------------~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 206 (308)
T 2ond_A 161 REDA--RTR--HH-----------------------------VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYV 206 (308)
T ss_dssp HTST--TCC--TH-----------------------------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HhcC--CCC--HH-----------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 7642 321 11 111201111223699999999999987752 3467899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 391 TAVGRMAMSMGDGDMAFDMVKRMKSLG-INPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~g-~~pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
..++..+.+.|+.++|..+|++..... +.|+ ...|..++..+.+.|+.+.|..+++++.+.
T Consensus 207 ~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 207 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999873 5663 568888999999999999999999998865
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.35 E-value=3.5e-06 Score=90.35 Aligned_cols=273 Identities=10% Similarity=-0.033 Sum_probs=187.1
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV 231 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~--~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~----Gi~pd-~~tyn~ 231 (732)
.....++..+|...|++..+.. |+ .|. ...|..+-..+...|++++|+..|++.... +-.|. ..++..
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVG--TE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--cc---cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4557789999999999987652 11 122 357888889999999999999999987632 22222 345666
Q ss_pred HHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCC----------
Q 004743 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (732)
Q Consensus 232 LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~---------- 299 (732)
+-..|. ..|++++|...+... .++....+-. ...+|..+-.. +...|+
T Consensus 93 la~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 93 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDV 152 (406)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHTCC-------
T ss_pred HHHHHH----------HcCCHHHHHHHHHHH----HHHHHhcccccchHHHHHHHHHH------HHHcCCcccccccchh
Confidence 666666 779999999988511 0111110100 12246666666 778888
Q ss_pred ----------hhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCH
Q 004743 300 ----------FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAF 368 (732)
Q Consensus 300 ----------~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~ 368 (732)
+++|...|.+....-- ..+-.|. ...|+. +-..|...|++
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~~~~~-la~~~~~~g~~ 203 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVT----------------------------ALGDRAAQGRAFGN-LGNTHYLLGNF 203 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHH----------------------------HTTCHHHHHHHHHH-HHHHHHHHTBH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH----------------------------hccCcHHHHHHHHH-HHHHHHHccCH
Confidence 8888888876543200 0000011 223445 77888899999
Q ss_pred HHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCCh
Q 004743 369 QRGFEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDV 438 (732)
Q Consensus 369 ~~A~~lf~~M~~~gi-~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~pd-~~ty~~lI~~~~~~g~~ 438 (732)
++|.+.|++.....- .++ ..+|..+...|...|++++|...+++.... +-.+. ..+|..+-..|...|++
T Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 283 (406)
T 3sf4_A 204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 283 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH
Confidence 999999998765210 122 347888999999999999999999987643 21111 56788888999999999
Q ss_pred HHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 439 DKACSVEEHMLEHGV-YPE----EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 439 ~~A~~l~~~M~~~gv-~pd----~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
++|.+.+++..+..- .++ ..++..+-..|.+.|++++|...+++..+
T Consensus 284 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988765311 112 55778888889999999999999988654
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.32 E-value=1.3e-05 Score=81.17 Aligned_cols=227 Identities=9% Similarity=-0.051 Sum_probs=166.1
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG--QYHYNVLLYLCS 237 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd--~~tyn~LL~~~~ 237 (732)
....++.++|.+.|++..+.. |+ +...|..+...|.+.|++++|++.|++....+-.|+ ...|..+-..|.
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~--p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKK--YN-----SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTT--CC-----CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC--CC-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 446789999999999986542 21 224788888899999999999999999997442222 334777777777
Q ss_pred hcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCC
Q 004743 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (732)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~P 317 (732)
..|+.++|...|. ...+. ...+...|..+-.. +...|++++|...|++..+. .|
T Consensus 86 ----------~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~al~~--~~ 139 (272)
T 3u4t_A 86 ----------KKGQDSLAIQQYQ-------AAVDR-DTTRLDMYGQIGSY------FYNKGNFPLAIQYMEKQIRP--TT 139 (272)
T ss_dssp ----------HTTCHHHHHHHHH-------HHHHH-STTCTHHHHHHHHH------HHHTTCHHHHHHHHGGGCCS--SC
T ss_pred ----------HcccHHHHHHHHH-------HHHhc-CcccHHHHHHHHHH------HHHccCHHHHHHHHHHHhhc--CC
Confidence 7899999999995 33332 22255567888788 99999999999998766543 22
Q ss_pred CccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004743 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (732)
Q Consensus 318 d~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~ 397 (732)
+ +...|.. +-..+...+++++|.+.|++..+.. +.+...|..+...+
T Consensus 140 ~-------------------------------~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~ 186 (272)
T 3u4t_A 140 T-------------------------------DPKVFYE-LGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARAN 186 (272)
T ss_dssp C-------------------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred C-------------------------------cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 2 1222333 3313334459999999999998753 33477888888888
Q ss_pred HhcCC---HHHHHHHHHHHHHcC-CCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 398 MSMGD---GDMAFDMVKRMKSLG-INPR------LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 398 ~~~g~---~~~A~~l~~~M~~~g-~~pd------~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
...|+ .++|...+++..+.. -.|+ ...|..+-..|...|+.++|.+.|+...+..
T Consensus 187 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 187 AAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 88888 888999888876542 2233 2577788889999999999999999988653
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.31 E-value=1.5e-06 Score=94.09 Aligned_cols=274 Identities=11% Similarity=-0.056 Sum_probs=188.8
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKL-GQYHYNV 231 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~--~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~----Gi~p-d~~tyn~ 231 (732)
.....++.++|...|++..+.. |+ .|. ...|..+-..|...|++++|+..|++.... +-.| ....+..
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAG--TE---DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhc--cc---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 4457789999999999987652 21 121 147888889999999999999999998743 2122 2345666
Q ss_pred HHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCC----------
Q 004743 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (732)
Q Consensus 232 LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~---------- 299 (732)
+-..|. ..|++++|...+... .+.....+-. ...+|+.+-.. +...|+
T Consensus 132 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~ 191 (411)
T 4a1s_A 132 LGNTLK----------VMGRFDEAAICCERH----LTLARQLGDRLSEGRALYNLGNV------YHAKGKHLGQRNPGKF 191 (411)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHHHHHHSTTCC
T ss_pred HHHHHH----------HCCCHHHHHHHHHHH----HHHHHHhhchHHHHHHHHHHHHH------HHHcCcccccccchhh
Confidence 666666 789999999988511 0111110111 23346666666 888888
Q ss_pred -------hhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCC-ChhhhHHHHHHHHHhccCHHHH
Q 004743 300 -------FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRG 371 (732)
Q Consensus 300 -------~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A 371 (732)
+++|...|.+..+..- . .+-.+ ....|.. +-..|...|++++|
T Consensus 192 ~~~a~~~~~~A~~~~~~al~~~~-------------------------~---~~~~~~~~~~~~~-la~~~~~~g~~~~A 242 (411)
T 4a1s_A 192 GDDVKEALTRAVEFYQENLKLMR-------------------------D---LGDRGAQGRACGN-LGNTYYLLGDFQAA 242 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-------------------------H---HTCHHHHHHHHHH-HHHHHHHTTCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH-------------------------H---cCCHHHHHHHHHH-HHHHHHHcCChHHH
Confidence 8888888876543210 0 00001 1123444 77888999999999
Q ss_pred HHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CChhhHHHHHHHHHhcCChHHH
Q 004743 372 FEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLG----IN-PRLRSYGPALSVFCNNGDVDKA 441 (732)
Q Consensus 372 ~~lf~~M~~~gi-~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g----~~-pd~~ty~~lI~~~~~~g~~~~A 441 (732)
.+.|++.....- .++ ..+|..+...|...|++++|...+++..... -. ....+|..+-..|...|+.++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 243 IEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998765311 112 2378889999999999999999998876541 11 1156778888899999999999
Q ss_pred HHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 442 CSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 442 ~~l~~~M~~~----gv~-pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+.+++..+. +-. ....+|..+-..|.+.|+.++|...|++..+.
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999987653 111 11347788888999999999999999988765
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.27 E-value=7.2e-05 Score=76.08 Aligned_cols=216 Identities=13% Similarity=-0.003 Sum_probs=164.2
Q ss_pred hhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004743 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLC 236 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k----~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~ 236 (732)
...++.++|.+.|+...+.+ +...+..+-..|.. .+++++|+..|++..+.+ +...+..|-..|
T Consensus 17 ~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 17 YKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 35678899999999886521 23677778888899 999999999999999887 677777777777
Q ss_pred HhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccc----cCChhHHHHHHHHHHH
Q 004743 237 SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKEN 312 (732)
Q Consensus 237 ~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~----~g~~~~A~~lf~eM~~ 312 (732)
.... ...++.++|...|. ...+. + +...+..|-.. +.. .+++++|...|++..+
T Consensus 85 ~~g~------~~~~~~~~A~~~~~-------~a~~~-~--~~~a~~~lg~~------~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 85 YSGQ------GVSQNTNKALQYYS-------KACDL-K--YAEGCASLGGI------YHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHTS------SSCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHCSSSCCCHHHHHHHHHHHHH
T ss_pred hCCC------CcccCHHHHHHHHH-------HHHHc-C--CccHHHHHHHH------HHcCCCcccCHHHHHHHHHHHHh
Confidence 7210 02789999999995 33332 2 34445555555 666 8999999999998877
Q ss_pred cCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHh----ccCHHHHHHHHHHHHhCCCCCCHH
Q 004743 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEA 388 (732)
Q Consensus 313 ~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~~ 388 (732)
.+ +... +.. +-..|.+ .+++++|.+.|++..+.+ +..
T Consensus 143 ~~---~~~a--------------------------------~~~-lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~ 183 (273)
T 1ouv_A 143 LN---DGDG--------------------------------CTI-LGSLYDAGRGTPKDLKKALASYDKACDLK---DSP 183 (273)
T ss_dssp TT---CHHH--------------------------------HHH-HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred cC---cHHH--------------------------------HHH-HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 64 1111 122 4445555 889999999999998875 567
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 004743 389 SLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 389 ty~~LI~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~g 452 (732)
.+..|-..|.. .++.++|...|++..+.+- ...+..+-..|.+ .++.++|.+.|+...+.|
T Consensus 184 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 184 GCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 88889999999 9999999999999888742 5566777778888 899999999999988765
No 57
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.25 E-value=0.00015 Score=81.83 Aligned_cols=271 Identities=10% Similarity=0.029 Sum_probs=180.3
Q ss_pred hcCCchHHHHHHHHhh--cCCCCCCC-CCCc--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCC
Q 004743 163 RTNDSGQYKVRGITDE--KGSKKSKK-DRSE--------QFQLRVELDMCSKR----GDV----MGAIRLYDKAQREGIK 223 (732)
Q Consensus 163 ~~~~~~A~~v~~~M~~--~g~~~~~~-~~p~--------~~tyn~lI~a~~k~----g~~----~~A~~lf~~M~~~Gi~ 223 (732)
.++...|..++.++.. .++..... ++|+ ...|...|...-.. ++. .+|..+|++.... .+
T Consensus 191 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p 269 (530)
T 2ooe_A 191 SRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LG 269 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HT
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CC
Confidence 3455667777766432 12332211 2343 35777776554432 233 4788899998865 23
Q ss_pred CCHHHHHHHHHHHHhcccCCcccCCCCChh-------hHHHHhhhccccchhhcccCCCC-Ccccccccccccccccccc
Q 004743 224 LGQYHYNVLLYLCSSAAVGVVKPAKSGSGM-------RTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESN 295 (732)
Q Consensus 224 pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~-------~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~~~~~~ 295 (732)
-+...|..+...+..... .-...|+++ +|..+|. ..... -.+ +...|..+... +.
T Consensus 270 ~~~~~w~~~~~~~~~~~~---~~~~~g~~~~a~~~~~~A~~~~~-------~Al~~-~~p~~~~l~~~~~~~------~~ 332 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSK---LLAEKGDMNNAKLFSDEAANIYE-------RAIST-LLKKNMLLYFAYADY------EE 332 (530)
T ss_dssp TCHHHHHHHHHHHHHHHH---HHHTTTCCHHHHHHHHHHHHHHH-------HHTTT-TCSSCHHHHHHHHHH------HH
T ss_pred CCHHHHHHHHHHHHHhch---hhhhccchhhhhhhhHHHHHHHH-------HHHHH-hCcccHHHHHHHHHH------HH
Confidence 456777777777662100 000157776 8888885 33321 122 44558788788 88
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHH
Q 004743 296 SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIY 375 (732)
Q Consensus 296 ~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf 375 (732)
+.|++++|..+|++..+. .|+..+ ..|.. ....+.+.|++++|.++|
T Consensus 333 ~~g~~~~A~~~~~~al~~--~p~~~~------------------------------~~~~~-~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAI--EDIDPT------------------------------LVYIQ-YMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HTTCHHHHHHHHHHHHHS--SSSCHH------------------------------HHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHhCc--cccCch------------------------------HHHHH-HHHHHHHhcCHHHHHHHH
Confidence 899999999999988774 343211 13445 667777889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-C
Q 004743 376 EKMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-V 453 (732)
Q Consensus 376 ~~M~~~gi~pd~~ty~~LI~~-~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g-v 453 (732)
++..+.. +.+...|-..... +...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|+.....+ .
T Consensus 380 ~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 380 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 9988753 2222333322222 346899999999999877652 2247788899999999999999999999998864 2
Q ss_pred CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 454 YPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 454 ~pd--~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|+ ...|...+......|+.+.+..++.++.+.
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333 558888898889999999999999998776
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.22 E-value=2e-05 Score=80.96 Aligned_cols=241 Identities=11% Similarity=0.004 Sum_probs=152.1
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCC-CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKS-KKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE------GIKL-GQYHYN 230 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~-~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~------Gi~p-d~~tyn 230 (732)
.....++.++|..+|++..+...... ...+.....|..+-..|...|++++|+.+|++.... +-.| ...++.
T Consensus 36 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (311)
T 3nf1_A 36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN 115 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34577899999999999865311110 011223467888999999999999999999998854 2223 356677
Q ss_pred HHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc------CCCC-CccccccccccccccccccccCChhHH
Q 004743 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL 303 (732)
Q Consensus 231 ~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~------~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A 303 (732)
.+-..|. ..|++++|...+. +.... ..-. ....|..+-.. +...|++++|
T Consensus 116 ~l~~~~~----------~~g~~~~A~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~A 172 (311)
T 3nf1_A 116 NLAVLYG----------KRGKYKEAEPLCK-------RALEIREKVLGKDHPDVAKQLNNLALL------CQNQGKYEEV 172 (311)
T ss_dssp HHHHHHH----------TTTCHHHHHHHHH-------HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHH
T ss_pred HHHHHHH----------HcCcHHHHHHHHH-------HHHHHHHHhcCCCChHHHHHHHHHHHH------HHHcCCHHHH
Confidence 7777787 8899999999995 22221 0111 34447777777 9999999999
Q ss_pred HHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCHHHHHHHHHHHHhC-
Q 004743 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLD- 381 (732)
Q Consensus 304 ~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~- 381 (732)
..+|++....-. .. ..+-.|+ ...+.. +...|.+.|++++|.+.|++....
T Consensus 173 ~~~~~~a~~~~~-------------------------~~-~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 173 EYYYQRALEIYQ-------------------------TK-LGPDDPNVAKTKNN-LASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHHHHHHHH-------------------------HT-SCTTCHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------------------HH-hCCCCHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999998865310 00 0001122 335555 888999999999999999998853
Q ss_pred ------CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 382 ------EVPMN-------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (732)
Q Consensus 382 ------gi~pd-------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (732)
...+. ...+..+...+...+.+.+|...+...... -..+..+|..+-..|.+.|+.++|.+.|++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11121 122333333444455555666666655433 2234577888999999999999999999887
Q ss_pred HH
Q 004743 449 LE 450 (732)
Q Consensus 449 ~~ 450 (732)
.+
T Consensus 305 l~ 306 (311)
T 3nf1_A 305 MR 306 (311)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 59
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.22 E-value=5.9e-05 Score=91.84 Aligned_cols=249 Identities=10% Similarity=0.098 Sum_probs=174.3
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
+...+..++|..+|+.-. .++ ...+.++. ..+++++|.++.++.. +..+|..+=.++.
T Consensus 1059 ai~lglyEEAf~IYkKa~----------~~~-~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql-- 1116 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD----------VNT-SAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL-- 1116 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC----------CHH-HHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHH--
Confidence 446778889999998861 111 33455544 6678999999888552 3678888888888
Q ss_pred ccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc
Q 004743 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (732)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~ 319 (732)
..|++++|++.|. .-.|.-.|.-++.+ +.+.|++++|.+.|..-.+.. ++.
T Consensus 1117 --------~~G~~kEAIdsYi-------------KAdD~say~eVa~~------~~~lGkyEEAIeyL~mArk~~--~e~ 1167 (1630)
T 1xi4_A 1117 --------QKGMVKEAIDSYI-------------KADDPSSYMEVVQA------ANTSGNWEELVKYLQMARKKA--RES 1167 (1630)
T ss_pred --------hCCCHHHHHHHHH-------------hcCChHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhc--ccc
Confidence 8899999999994 11244557778888 999999999999997544433 443
Q ss_pred cccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004743 320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399 (732)
Q Consensus 320 ~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~ 399 (732)
...+ .+..+|+... -+.++..-=-.|+...|.. +=..|...|++++|..+|... ..|..+...|++
T Consensus 1168 ~Idt--~LafaYAKl~--rleele~fI~~~n~ad~~~-iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1168 YVET--ELIFALAKTN--RLAELEEFINGPNNAHIQQ-VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 1233 (1630)
T ss_pred cccH--HHHHHHHhhc--CHHHHHHHHhCCCHHHHHH-HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHH
Confidence 2222 2333333221 0111111111345555666 667888889999999999884 379999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 004743 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (732)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l 479 (732)
.|++++|.+.+++- -+..+|.-+-.+|...|++..|...... +..+...+..++..|-+.|.+++|..+
T Consensus 1234 Lge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred hCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998754 3567888888888888888888776553 345666777889999999999999999
Q ss_pred HHHHH
Q 004743 480 LHKLR 484 (732)
Q Consensus 480 ~~~M~ 484 (732)
++.-.
T Consensus 1303 lE~aL 1307 (1630)
T 1xi4_A 1303 LEAAL 1307 (1630)
T ss_pred HHHHh
Confidence 86543
No 60
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.22 E-value=9.6e-06 Score=81.85 Aligned_cols=234 Identities=8% Similarity=-0.059 Sum_probs=131.9
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc--
Q 004743 202 SKRGDVMGAIRLYDKAQRE-------GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-- 272 (732)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~-------Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~-- 272 (732)
...|++++|+.+|++..+. .-+....++..+-..|. ..|++++|...+. +....
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~al~~~~ 74 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR----------DQNKYKEAAHLLN-------DALAIRE 74 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHHHHH
Confidence 3456666666666665531 11223456666666777 6788888888885 22211
Q ss_pred ----CCCC-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCC
Q 004743 273 ----RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDW 347 (732)
Q Consensus 273 ----~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~ 347 (732)
..-+ ...+|+.+-.. +...|++++|...|.+.....- .... .-
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~-------------------------~~~~-~~ 122 (283)
T 3edt_B 75 KTLGKDHPAVAATLNNLAVL------YGKRGKYKEAEPLCKRALEIRE-------------------------KVLG-KF 122 (283)
T ss_dssp HHTCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHHH-------------------------HHHC-TT
T ss_pred HHcCCcchHHHHHHHHHHHH------HHHhccHHHHHHHHHHHHHHHH-------------------------HHcC-CC
Confidence 0111 33346666666 7788888888888877654310 0000 00
Q ss_pred CC-ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 004743 348 SI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--- 416 (732)
Q Consensus 348 ~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~------gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--- 416 (732)
.| ....|.. +-..|...|++++|.+.|++.... +-.| ...++..+...|...|++++|..++++..+.
T Consensus 123 ~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 123 HPDVAKQLNN-LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 2334555 667777888888888888877654 1122 3456777778888888888888888777653
Q ss_pred ----CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH---C-C-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 417 ----GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE---H-G-V-YPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 417 ----g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~---~-g-v-~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
...+....+...+..+...+........+..+.. . + . .....+|..|-..|.+.|++++|..+|++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2233333333333333333222221111211111 1 1 1 11234677888899999999999999988654
No 61
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.19 E-value=1.2e-05 Score=81.02 Aligned_cols=239 Identities=10% Similarity=-0.029 Sum_probs=147.4
Q ss_pred hhcCCchHHHHHHHHhhcCCCCC-CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHH
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKS-KKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE------GIKL-GQYHYNVLL 233 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~-~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~------Gi~p-d~~tyn~LL 233 (732)
..++..+|...|++..+.-.+.. ...+....+|..+-..|...|++++|+..|+++.+. +-.| ...+|..+-
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44566677777766544211100 111224568889999999999999999999998854 2223 355777777
Q ss_pred HHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc----CCC--C-CccccccccccccccccccccCChhHHHHH
Q 004743 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS----RDM--D-NNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (732)
Q Consensus 234 ~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~----~g~--~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~l 306 (732)
..|. ..|++++|...+. +.... .+- + ....|..+-.. +...|++++|..+
T Consensus 93 ~~~~----------~~g~~~~A~~~~~-------~al~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~ 149 (283)
T 3edt_B 93 VLYG----------KRGKYKEAEPLCK-------RALEIREKVLGKFHPDVAKQLNNLALL------CQNQGKAEEVEYY 149 (283)
T ss_dssp HHHH----------TTTCHHHHHHHHH-------HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHH
T ss_pred HHHH----------HhccHHHHHHHHH-------HHHHHHHHHcCCCChHHHHHHHHHHHH------HHHcCCHHHHHHH
Confidence 7888 8899999999985 22211 011 1 34447777777 9999999999999
Q ss_pred HHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCC-ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----
Q 004743 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD---- 381 (732)
Q Consensus 307 f~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~---- 381 (732)
|++..+.-. ... .+-.| ....+.. +-..|.+.|++++|.++|++....
T Consensus 150 ~~~al~~~~-------------------------~~~-~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 150 YRRALEIYA-------------------------TRL-GPDDPNVAKTKNN-LASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp HHHHHHHHH-------------------------HHS-CTTCHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------Hhc-CCCCHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 998765300 000 00012 2345666 788999999999999999988753
Q ss_pred ---CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH---HHcC-C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 382 ---EVPMNE-ASLTAVGRMAMSMGDGDMAFDMVKRM---KSLG-I-NPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 382 ---gi~pd~-~ty~~LI~~~~~~g~~~~A~~l~~~M---~~~g-~-~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
...+.. ..|..+...+...+....+..+.... ...+ . .....+|..+-..|...|+.++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122222 23333333333333322222211111 1111 1 12245788888999999999999999998764
No 62
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.18 E-value=9.5e-05 Score=69.15 Aligned_cols=149 Identities=9% Similarity=-0.037 Sum_probs=119.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+...+...|++++|.+.|+++.... +.+..+|..+...+...|++++|...+++..+.. +.+...|..+...+...|+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQK 91 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC
Confidence 6678889999999999999987653 4578889999999999999999999999988762 3457788888999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC-hhHHHH-HHHHHhchHHHHhc
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG 511 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~-p~t~~~-I~~~~~~~~~~~a~ 511 (732)
+++|.+.++++.+.. ..+...+..+...|...|+.++|..++++.... .+. +..+.. ...+...+...++.
T Consensus 92 ~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 92 YDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999998764 456788888999999999999999999998876 333 334433 44455555544443
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.18 E-value=9e-05 Score=70.33 Aligned_cols=163 Identities=12% Similarity=0.035 Sum_probs=128.6
Q ss_pred cccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHH
Q 004743 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (732)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~ 360 (732)
|..|=.. +...|++++|...|++..+. .|+ +...|.. +-.
T Consensus 8 y~~lG~~------~~~~g~~~~A~~~~~~al~~--~p~-------------------------------~~~~~~~-la~ 47 (184)
T 3vtx_A 8 YMDIGDK------KRTKGDFDGAIRAYKKVLKA--DPN-------------------------------NVETLLK-LGK 47 (184)
T ss_dssp HHHHHHH------HHHHTCHHHHHHHHHHHHHH--CTT-------------------------------CHHHHHH-HHH
T ss_pred HHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCC-------------------------------CHHHHHH-HHH
Confidence 5555455 88899999999999987764 233 2223344 777
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
.|.+.|++++|.+.+....... +-+...+..+-..+...++.+.|...+.+..... +-+...+..+-..|.+.|++++
T Consensus 48 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~ 125 (184)
T 3vtx_A 48 TYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDK 125 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchh
Confidence 8889999999999999887754 3456777888888899999999999998877652 2356778888888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
|.+.|++..+.. .-+...|..+-.+|.+.|+.++|...|++..+.
T Consensus 126 A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 126 AIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 999999988764 345678888999999999999999999987664
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.18 E-value=1.4e-05 Score=82.48 Aligned_cols=245 Identities=11% Similarity=0.045 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccch
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd----~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~ 267 (732)
..+...-..+.+.|++++|+.+|+++.+.. +.+ ...|..+-..|. ..|++++|...+... .
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l 70 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD----L 70 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----H
Confidence 344555667889999999999999999763 223 356667777777 789999999998511 0
Q ss_pred hhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHHHHcCC-CCCccccchhhhhhccccccCCCchhhhc
Q 004743 268 ELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (732)
Q Consensus 268 em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi-~Pd~~ty~~~~li~~~~~~a~~~~~~m~~ 344 (732)
++....+-. ....|..+-.. +...|++++|...|.+..+..- .++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------- 121 (338)
T 3ro2_A 71 TLARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDKVG----------------------- 121 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHH-----------------------
T ss_pred HHhhcccccHHHHHHHHHHHHH------HHHccCHHHHHHHHHHHHHHHHHhcCchH-----------------------
Confidence 111111111 23446667677 8899999999999988755310 001000
Q ss_pred cCCCCChhhhHHHHHHHHHhccC--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHh
Q 004743 345 KDWSIDNQDADEIRLSEDAKKYA--------------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMS 399 (732)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~--------------------~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~ 399 (732)
...++.. +-..|...|+ +++|.+.+++.... +-.| ...+|..+...+..
T Consensus 122 -----~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 122 -----EARALYN-LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp -----HHHHHHH-HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHH-HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 0123334 6677777888 89999888876532 2111 23578888899999
Q ss_pred cCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh
Q 004743 400 MGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPE----EPELEALLRVSVE 469 (732)
Q Consensus 400 ~g~~~~A~~l~~~M~~~----g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-~pd----~~ty~~Li~~~~~ 469 (732)
.|++++|.+.+++..+. +..+ ...+|..+...|...|+.++|.+.+++..+..- .++ ..++..+-..|..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 99999999999987643 1111 134788888899999999999999988764311 112 5577888889999
Q ss_pred cCChHHHHHHHHHHHhc
Q 004743 470 AGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 470 ~g~~~~A~~l~~~M~~~ 486 (732)
.|++++|...+++....
T Consensus 276 ~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 99999999999887553
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.16 E-value=1.4e-05 Score=86.24 Aligned_cols=245 Identities=12% Similarity=0.026 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccch
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~----~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~ 267 (732)
..+..+-..+...|++++|+.+|+++.+.+- .+. ..|..+-..|. ..|++++|...+... -
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~----------~~g~~~~A~~~~~~a----l 113 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYF----------YLGDYNKAMQYHKHD----L 113 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHH----H
Confidence 4455566788899999999999999998632 233 45666666676 678999999988511 1
Q ss_pred hhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhcc
Q 004743 268 ELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (732)
Q Consensus 268 em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~ 345 (732)
++....+-. ....|..+-.. +...|++++|...|++..+..-. .
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~----------------------------~ 159 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNT------LKVMGRFDEAAICCERHLTLARQ----------------------------L 159 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHH----------------------------H
T ss_pred HHHHHccCchHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHH----------------------------h
Confidence 111111111 33446677777 89999999999999887653100 0
Q ss_pred CCCC-ChhhhHHHHHHHHHhccC-----------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC
Q 004743 346 DWSI-DNQDADEIRLSEDAKKYA-----------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGD 402 (732)
Q Consensus 346 g~~p-d~~tyn~~lI~~~~k~g~-----------------~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~g~ 402 (732)
+-.| ....|+. +-..|...|+ +++|.+.+++.... +-.| ...+|..+-..|...|+
T Consensus 160 ~~~~~~~~~~~~-l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 238 (411)
T 4a1s_A 160 GDRLSEGRALYN-LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD 238 (411)
T ss_dssp TCHHHHHHHHHH-HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hchHHHHHHHHH-HHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 0001 1223444 6678888888 99999988876532 2112 23578888999999999
Q ss_pred HHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHHhcCC
Q 004743 403 GDMAFDMVKRMKSLGI-NPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV----Y-PEEPELEALLRVSVEAGK 472 (732)
Q Consensus 403 ~~~A~~l~~~M~~~g~-~pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv----~-pd~~ty~~Li~~~~~~g~ 472 (732)
+++|...+++..+..- .++ ..+|..+-..|...|++++|.+.+++..+..- . ....++..+-..|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (411)
T 4a1s_A 239 FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE 318 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999998765411 011 23788888999999999999999988765321 1 114677888889999999
Q ss_pred hHHHHHHHHHHHhc
Q 004743 473 GDRVYYLLHKLRTS 486 (732)
Q Consensus 473 ~~~A~~l~~~M~~~ 486 (732)
.++|..+|++....
T Consensus 319 ~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 319 FNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
No 66
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.15 E-value=2.1e-05 Score=84.15 Aligned_cols=249 Identities=11% Similarity=0.008 Sum_probs=172.3
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhcc
Q 004743 188 RSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263 (732)
Q Consensus 188 ~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd----~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~ 263 (732)
.+....+...=..+.+.|++++|+.+|+++.+.+ +.+ ...|..+-..|. ..|++++|...+...
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a- 73 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD- 73 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHH----------HhcCHHHHHHHHHHH-
Confidence 3445667777788899999999999999999763 223 345666667777 779999999988511
Q ss_pred ccchhhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHHHHcCCC-CCccccchhhhhhccccccCCCch
Q 004743 264 MNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDD 340 (732)
Q Consensus 264 ~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~-Pd~~ty~~~~li~~~~~~a~~~~~ 340 (732)
.++....+-. ....|..+-.. +...|++++|...|++..+..-. ++...
T Consensus 74 ---l~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------- 125 (406)
T 3sf4_A 74 ---LTLARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDKVG------------------- 125 (406)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHTCHHH-------------------
T ss_pred ---HHHHHhccccHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHhcccccc-------------------
Confidence 0111111111 23346666667 88999999999999877653100 00000
Q ss_pred hhhccCCCCChhhhHHHHHHHHHhccC--------------------HHHHHHHHHHHHh----CCCCC-CHHHHHHHHH
Q 004743 341 QSRKKDWSIDNQDADEIRLSEDAKKYA--------------------FQRGFEIYEKMCL----DEVPM-NEASLTAVGR 395 (732)
Q Consensus 341 ~m~~~g~~pd~~tyn~~lI~~~~k~g~--------------------~~~A~~lf~~M~~----~gi~p-d~~ty~~LI~ 395 (732)
...++.. +-..|...|+ +++|.+.+++... .+-.| ...+|..+-.
T Consensus 126 ---------~~~~~~~-l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 195 (406)
T 3sf4_A 126 ---------EARALYN-LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGN 195 (406)
T ss_dssp ---------HHHHHHH-HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------hHHHHHH-HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 0123344 6677788888 8999988887553 22122 2357888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 004743 396 MAMSMGDGDMAFDMVKRMKSLGI-NPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE-EPELEALLR 465 (732)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~-~pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd-~~ty~~Li~ 465 (732)
.|...|++++|...+++..+..- .++ ..+|..+-..|...|+.++|...+++..+. +-.+. ..++..+-.
T Consensus 196 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 275 (406)
T 3sf4_A 196 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN 275 (406)
T ss_dssp HHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHH
Confidence 99999999999999998764310 112 347888888999999999999999887643 21111 557788888
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 004743 466 VSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 466 ~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|...|++++|...+++....
T Consensus 276 ~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 276 TYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHH
Confidence 999999999999999887553
No 67
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.13 E-value=2.5e-05 Score=68.74 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=101.0
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|..+|+++.+.. |+ +...|.. +...+...|++++|..
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~--~~-------------------------------~~~~~~~-~a~~~~~~~~~~~A~~ 56 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELD--PR-------------------------------SAEAWYN-LGNAYYKQGDYDEAIE 56 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TT-------------------------------CHHHHHH-HHHHHHHHTCHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHcC--Cc-------------------------------chhHHHH-HHHHHHHhcCHHHHHH
Confidence 778899999999999987653 21 1223334 6778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
+|+++...+ +.+...|..+...+...|++++|.++++++.... +.+...+..+...+.+.|+.++|...++++.+.
T Consensus 57 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 57 YYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999998764 4567889999999999999999999999988763 345778888999999999999999999998764
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.12 E-value=2.9e-05 Score=86.71 Aligned_cols=213 Identities=4% Similarity=-0.145 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCCh-hhHHHHhhhccccchhhcccCCCCCcccccccc
Q 004743 207 VMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-MRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGS 285 (732)
Q Consensus 207 ~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~-~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI 285 (732)
+++|++.+++..... +.+...+..+=..|. ..|++ ++|+..|. +..+. .-.+...|..+-
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~----------~~g~~~~~A~~~~~-------~al~~-~p~~~~a~~~lg 144 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALN----------VTPDYSPEAEVLLS-------KAVKL-EPELVEAWNQLG 144 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHT----------SSSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHH----------hccccHHHHHHHHH-------HHHhh-CCCCHHHHHHHH
Confidence 566777777655322 235667777767777 78999 99999995 33332 222455688888
Q ss_pred ccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhc
Q 004743 286 SPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK 365 (732)
Q Consensus 286 ~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~ 365 (732)
.. |...|++++|...|++..+.. |+... |.. +-..|...
T Consensus 145 ~~------~~~~g~~~~A~~~~~~al~~~--p~~~~--------------------------------~~~-lg~~~~~~ 183 (474)
T 4abn_A 145 EV------YWKKGDVTSAHTCFSGALTHC--KNKVS--------------------------------LQN-LSMVLRQL 183 (474)
T ss_dssp HH------HHHHTCHHHHHHHHHHHHTTC--CCHHH--------------------------------HHH-HHHHHTTC
T ss_pred HH------HHHcCCHHHHHHHHHHHHhhC--CCHHH--------------------------------HHH-HHHHHHHh
Confidence 88 999999999999999887653 55322 223 55666677
Q ss_pred ---------cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCC----Chhh
Q 004743 366 ---------YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINP----RLRS 424 (732)
Q Consensus 366 ---------g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~--------g~~~~A~~l~~~M~~~g~~p----d~~t 424 (732)
|++++|.+.|++..+.. +-+...|..+-.+|... |++++|.+.|++..+. .| +...
T Consensus 184 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 260 (474)
T 4abn_A 184 QTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDL 260 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHH
T ss_pred ccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHH
Confidence 99999999999988764 34678899999999998 9999999999998875 35 6788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
|..+-..|...|++++|.+.|++..+.. .-+...+..+-..+...|+.++|...+.++
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999988754 234557888888888999999998766544
No 69
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.10 E-value=0.00015 Score=78.52 Aligned_cols=238 Identities=9% Similarity=-0.028 Sum_probs=173.1
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGD-VMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~-~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~ 237 (732)
.+.+.++.++|.+.|+...+.. +-+...|+.+-..+.+.|+ +++|+..|++..... +-+...|+.+-.++.
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 4557789999999999986531 2235788889999999996 999999999999754 225677888777777
Q ss_pred hcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCC
Q 004743 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (732)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~P 317 (732)
+.|++++|+..|. ..... .-.+...|..+-.+ +...|++++|...|+++.+.. |
T Consensus 178 ----------~~g~~~eAl~~~~-------kal~l-dP~~~~a~~~lg~~------~~~~g~~~eAl~~~~~al~l~--P 231 (382)
T 2h6f_A 178 ----------WLRDPSQELEFIA-------DILNQ-DAKNYHAWQHRQWV------IQEFKLWDNELQYVDQLLKED--V 231 (382)
T ss_dssp ----------HHTCCTTHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--T
T ss_pred ----------HccCHHHHHHHHH-------HHHHh-CccCHHHHHHHHHH------HHHcCChHHHHHHHHHHHHhC--C
Confidence 7789999999995 44432 33366668888778 889999999999999998763 2
Q ss_pred CccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHh-ccCHHHH-----HHHHHHHHhCCCCCCHHHHH
Q 004743 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK-KYAFQRG-----FEIYEKMCLDEVPMNEASLT 391 (732)
Q Consensus 318 d~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k-~g~~~~A-----~~lf~~M~~~gi~pd~~ty~ 391 (732)
+ +...|+. +-..|.+ .|..++| ++.|++..... +-+...|+
T Consensus 232 ~-------------------------------~~~a~~~-lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~ 278 (382)
T 2h6f_A 232 R-------------------------------NNSVWNQ-RYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWN 278 (382)
T ss_dssp T-------------------------------CHHHHHH-HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred C-------------------------------CHHHHHH-HHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 2 2233444 5555666 5655666 57788777643 33678899
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---------ChHHHHHHHHHH-HHCCCCCCH-H
Q 004743 392 AVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---------DVDKACSVEEHM-LEHGVYPEE-P 458 (732)
Q Consensus 392 ~LI~~~~~~g--~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g---------~~~~A~~l~~~M-~~~gv~pd~-~ 458 (732)
.+-..+...| +.++|.+.+.++ ..-..+...+..+...|.+.| ..++|.++++++ .+. .|.. .
T Consensus 279 ~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~ 354 (382)
T 2h6f_A 279 YLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKE 354 (382)
T ss_dssp HHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHH
T ss_pred HHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHH
Confidence 9999999988 689999999887 323345677888888898874 358999999998 433 3443 3
Q ss_pred HHHHHHHHH
Q 004743 459 ELEALLRVS 467 (732)
Q Consensus 459 ty~~Li~~~ 467 (732)
-|..+...+
T Consensus 355 ~w~~~~~~l 363 (382)
T 2h6f_A 355 YWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 70
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.04 E-value=0.0023 Score=71.12 Aligned_cols=274 Identities=10% Similarity=-0.007 Sum_probs=157.8
Q ss_pred hcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k----~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
.++..+|.+.|+...+.| +...+..|=..|.. .+++++|+..|+...+.| +...+..|-..|..
T Consensus 92 ~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 159 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFE 159 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 345556666666654432 11344445455555 566666666666666555 34444444444442
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccc----cCChhHHHHHHHHHHHcC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLG 314 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~----~g~~~~A~~lf~eM~~~g 314 (732)
.. + -.++.++|...|. ...+. | +...+..|-.. |.. .++.++|...|.+-.+.|
T Consensus 160 g~-g-----~~~d~~~A~~~~~-------~a~~~-~--~~~a~~~Lg~~------y~~g~g~~~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 160 GD-G-----VTRDYVMAREWYS-------KAAEQ-G--NVWSCNQLGYM------YSRGLGVERNDAISAQWYRKSATSG 217 (490)
T ss_dssp TS-S-----SCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CC-C-----CCCCHHHHHHHHH-------HHHHC-C--CHHHHHHHHHH------HhcCCCCCcCHHHHHHHHHHHHHCC
Confidence 10 0 1455666666663 22221 1 22223333222 332 566666666666655543
Q ss_pred CCCCccccc-hhhh-hhc-----cccccCCCchhhhccCCCCChhhhHHHHHHHHHh----ccCHHHHHHHHHHHHhCCC
Q 004743 315 QFSNGHMKL-NSQL-LDG-----RSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEV 383 (732)
Q Consensus 315 i~Pd~~ty~-~~~l-i~~-----~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k----~g~~~~A~~lf~~M~~~gi 383 (732)
. ...+. .+.+ ..+ -...|...+......| +...+.. +-..|.. .++.++|.+.|++..+.|
T Consensus 218 ~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~-lg~~y~~g~~~~~d~~~A~~~~~~a~~~~- 289 (490)
T 2xm6_A 218 D---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR-LGYILEQGLAGAKEPLKALEWYRKSAEQG- 289 (490)
T ss_dssp C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH-HHHHHHHTTTSSCCHHHHHHHHHHHHTTT-
T ss_pred C---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHcC-
Confidence 1 11111 0011 000 0122222333333222 2222223 3334444 788999999999988775
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC
Q 004743 384 PMNEASLTAVGRMAMSM-----GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---DVDKACSVEEHMLEHGVYP 455 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~-----g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g---~~~~A~~l~~~M~~~gv~p 455 (732)
+...+..|-..|... ++.++|...|++..+.| +...+..+-..|...| +.++|.+.|+...+.|
T Consensus 290 --~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--- 361 (490)
T 2xm6_A 290 --NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--- 361 (490)
T ss_dssp --CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---
T ss_pred --CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---
Confidence 456777777888777 89999999999888775 3445555666666656 7889999999988875
Q ss_pred CHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 004743 456 EEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 456 d~~ty~~Li~~~~~----~g~~~~A~~l~~~M~~~ 486 (732)
+...+..|-..|.. .++.++|...|++..+.
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 66777777777877 78999999999998876
No 71
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.02 E-value=0.0018 Score=71.97 Aligned_cols=278 Identities=12% Similarity=0.077 Sum_probs=186.6
Q ss_pred hcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k----~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
.++..+|.+.|+...+.| +...+..|-..|.. .++.++|++.|++..+.| +...+..|-..|..
T Consensus 128 ~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 195 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG---------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSR 195 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhc
Confidence 467778888888875543 12556666666766 778888888888888765 56666666666662
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcccccccccccccccccc----ccCChhHHHHHHHHHHHcC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESN----SSYRFDDLDSTFNEKENLG 314 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~----~~g~~~~A~~lf~eM~~~g 314 (732)
.. + ..++.++|...|. ...+. | +...+..|-.. +. ..+++++|..+|++..+.|
T Consensus 196 g~-g-----~~~~~~~A~~~~~-------~a~~~-~--~~~a~~~lg~~------y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 196 GL-G-----VERNDAISAQWYR-------KSATS-G--DELGQLHLADM------YYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp TS-S-----SCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred CC-C-----CCcCHHHHHHHHH-------HHHHC-C--CHHHHHHHHHH------HHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 11 0 2577888888874 22222 2 33333333333 33 3677888888888777664
Q ss_pred CCCCccccchhhhh-hcc-----ccccCCCchhhhccCCCCChhhhHHHHHHHHHhc-----cCHHHHHHHHHHHHhCCC
Q 004743 315 QFSNGHMKLNSQLL-DGR-----SNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK-----YAFQRGFEIYEKMCLDEV 383 (732)
Q Consensus 315 i~Pd~~ty~~~~li-~~~-----~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~-----g~~~~A~~lf~~M~~~gi 383 (732)
..+ ..++.+.+. .|. ...|...+......| +...+.. |-..|... ++.++|.+.|++..+.|
T Consensus 254 ~~~--a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~-Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~- 326 (490)
T 2xm6_A 254 NSI--AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYY-LAHLYDKGAEGVAKNREQAISWYTKSAEQG- 326 (490)
T ss_dssp CHH--HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHH-HHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-
T ss_pred CHH--HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHH-HHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-
Confidence 211 111111111 111 123333444444332 2333444 55556665 89999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCC
Q 004743 384 PMNEASLTAVGRMAMSMG---DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPE 456 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g---~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~gv~pd 456 (732)
+...+..|-..|...| +.++|.+.|++..+.| +...+..|=..|.. .++.++|.+.|+...+.| +
T Consensus 327 --~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~ 398 (490)
T 2xm6_A 327 --DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---L 398 (490)
T ss_dssp --CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred --CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---C
Confidence 5567777888888766 7899999999988874 56677777777888 799999999999999876 5
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHhccCCCC
Q 004743 457 EPELEALLRVSVE----AGKGDRVYYLLHKLRTSVRKVS 491 (732)
Q Consensus 457 ~~ty~~Li~~~~~----~g~~~~A~~l~~~M~~~~~~~~ 491 (732)
...+..|-..|.+ .++.++|...|++..+. ++.
T Consensus 399 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~ 435 (490)
T 2xm6_A 399 SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN--DMN 435 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH--HCC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCC
Confidence 6777778888877 89999999999999887 544
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.01 E-value=0.00068 Score=64.12 Aligned_cols=156 Identities=14% Similarity=0.046 Sum_probs=121.8
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI 429 (732)
+...|.. +=..|.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++++|...+....... .-+...+..+-
T Consensus 4 ~~~iy~~-lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMD-IGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 3455666 7788999999999999999988754 3467889999999999999999999999987663 23456667777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh-hHHHH-HHHHHhchHH
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-STADV-IAKWFNSKEA 507 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p-~t~~~-I~~~~~~~~~ 507 (732)
..+...++.+.|.+.+....... .-+...+..+-..|.+.|++++|...|++..+. .|.. ..+.. -..+.+.+..
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCH
Confidence 78889999999999999987654 345778888889999999999999999998876 3332 34433 4445555555
Q ss_pred HHhc
Q 004743 508 ARLG 511 (732)
Q Consensus 508 ~~a~ 511 (732)
.+|.
T Consensus 158 ~~A~ 161 (184)
T 3vtx_A 158 DEAV 161 (184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.98 E-value=8.5e-05 Score=79.80 Aligned_cols=236 Identities=9% Similarity=0.045 Sum_probs=160.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc
Q 004743 198 LDMCSKRGDVMGAIRLYDKAQREG-IKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (732)
Q Consensus 198 I~a~~k~g~~~~A~~lf~~M~~~G-i~pd----~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~ 272 (732)
=..+...|++++|+..|++....- -.+| ..+|..+-..|. ..|+.++|...+... -++...
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~----------~~~~~~~A~~~~~~a----l~~~~~ 175 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY----------YMKQTYFSMDYARQA----YEIYKE 175 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----HHHHHh
Confidence 345678899999999999998531 1133 345666666666 778899888888511 111111
Q ss_pred CCC-C--CccccccccccccccccccccCChhHHHHHHHHHHHcCCC-CCccccchhhhhhccccccCCCchhhhccCCC
Q 004743 273 RDM-D--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (732)
Q Consensus 273 ~g~-~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~-Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~ 348 (732)
.+- . ...+++.+-.. +...|++++|...|++..+..-. +|...
T Consensus 176 ~~~~~~~~~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------- 222 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATN------FLDLKQYEDAISHFQKAYSMAEAEKQPQL--------------------------- 222 (383)
T ss_dssp CSTTHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------------------------
T ss_pred CccchHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHcCChHH---------------------------
Confidence 111 1 22346666666 88999999999999877643100 11000
Q ss_pred CChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC
Q 004743 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GIN 419 (732)
Q Consensus 349 pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~ 419 (732)
...+|+. +-..|...|++++|.+.|++.... +. +....++..+-..|.+.|++++|...+++..+. +-.
T Consensus 223 -~~~~~~~-lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 300 (383)
T 3ulq_A 223 -MGRTLYN-IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV 300 (383)
T ss_dssp -HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred -HHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 1124445 778889999999999999987762 33 334678999999999999999999999887643 222
Q ss_pred CChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 420 PRLRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 420 pd~~ty~~lI~~~~~~g~---~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.....+..+-..|...|+ +++|..+++.. +..|+ ...+..|-..|.+.|+.++|...|++...
T Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 301 IYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 223345667777778888 77777777765 33333 33566788889999999999999988754
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.90 E-value=0.00092 Score=71.07 Aligned_cols=272 Identities=9% Similarity=-0.019 Sum_probs=172.1
Q ss_pred hhhcCCchHHHHHHHHhhcCCCCCCCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHH
Q 004743 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRS--EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI-KLGQ----YHYNVLL 233 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~g~~~~~~~~p--~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi-~pd~----~tyn~LL 233 (732)
...++.++|...+++..... +.. .+ -...++.+-..+...|++++|.+.+++.....- .++. .++..+-
T Consensus 25 ~~~g~~~~A~~~~~~al~~~--~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEEL--PPG--WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTC--CTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcC--CCC--chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 35688899999999865432 111 11 113566677788899999999999999874210 1222 2234444
Q ss_pred HHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC----CccccccccccccccccccccCChhHHHHHHHH
Q 004743 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (732)
Q Consensus 234 ~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~----d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~e 309 (732)
..+. ..|++++|...+... -+.....+-. ....++.+-.. +...|++++|...+++
T Consensus 101 ~~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~ 160 (373)
T 1hz4_A 101 EILF----------AQGFLQTAWETQEKA----FQLINEQHLEQLPMHEFLVRIRAQL------LWAWARLDEAEASARS 160 (373)
T ss_dssp HHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCTTSTHHHHHHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred HHHH----------HCCCHHHHHHHHHHH----HHHHHHhccccCcHHHHHHHHHHHH------HHHhcCHHHHHHHHHH
Confidence 4455 679999999988511 0111111111 12234555556 7889999999999988
Q ss_pred HHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC--H
Q 004743 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--E 387 (732)
Q Consensus 310 M~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--~ 387 (732)
.....-...... ....|.. +-..+...|++++|...+++.....-.++ .
T Consensus 161 al~~~~~~~~~~----------------------------~~~~~~~-la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 211 (373)
T 1hz4_A 161 GIEVLSSYQPQQ----------------------------QLQCLAM-LIQCSLARGDLDNARSQLNRLENLLGNGKYHS 211 (373)
T ss_dssp HHHHTTTSCGGG----------------------------GHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHhhccCcHH----------------------------HHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHhccCcch
Confidence 765421110000 1123334 66778889999999999998765311111 1
Q ss_pred HHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC
Q 004743 388 ASLT----AVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE 456 (732)
Q Consensus 388 ~ty~----~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd---~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd 456 (732)
.... .++..+...|+.++|...+++.......+. ...+..+...+...|+.++|.+.+++.... |..++
T Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 291 (373)
T 1hz4_A 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 291 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhh
Confidence 1111 233457799999999999988654322111 224567778899999999999999887543 32223
Q ss_pred HH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 457 EP-ELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 457 ~~-ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.. .+..+-.++...|+.++|...|++...
T Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 292 LNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 32 556667778899999999999987654
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.86 E-value=0.0013 Score=69.99 Aligned_cols=239 Identities=14% Similarity=-0.011 Sum_probs=154.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCC
Q 004743 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQY----HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (732)
Q Consensus 199 ~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~----tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g 274 (732)
..+...|++++|..++++.....-..+.. .++.+-..+. ..|++++|...+... .+.....|
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~ 87 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----------CKGELTRSLALMQQT----EQMARQHD 87 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----HHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH----------hcCcHHHHHHHHHHH----HHHHHhcC
Confidence 45567899999999999988654222332 3344444455 568899999888511 11111111
Q ss_pred CC--CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCC--CC
Q 004743 275 MD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS--ID 350 (732)
Q Consensus 275 ~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~--pd 350 (732)
.. -..+++.+-.. +...|++++|...+++.....-. .|-. |.
T Consensus 88 ~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~~~~----------------------------~~~~~~~~ 133 (373)
T 1hz4_A 88 VWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINE----------------------------QHLEQLPM 133 (373)
T ss_dssp CHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHH----------------------------TTCTTSTH
T ss_pred cHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHH----------------------------hccccCcH
Confidence 11 11224444455 78899999999999887653100 0000 11
Q ss_pred -hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hh
Q 004743 351 -NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV----PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RS 424 (732)
Q Consensus 351 -~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi----~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t 424 (732)
...+.. +-..|...|++++|...+++.....- .....+|..+-..+...|++++|...+++.....-.++. ..
T Consensus 134 ~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 212 (373)
T 1hz4_A 134 HEFLVRI-RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 212 (373)
T ss_dssp HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh
Confidence 112333 55678889999999999998765321 112467888889999999999999999988754222221 12
Q ss_pred HH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 425 YG-----PALSVFCNNGDVDKACSVEEHMLEHGVYP---EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 425 y~-----~lI~~~~~~g~~~~A~~l~~~M~~~gv~p---d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+. ..+..+...|+.++|...+++.......+ ....+..+...+...|+.++|..++++....
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 213 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 23344779999999999998876543211 1335677788899999999999999887543
No 76
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.83 E-value=0.0022 Score=78.47 Aligned_cols=246 Identities=12% Similarity=0.001 Sum_probs=166.4
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~ 241 (732)
..+++++|.++.+... . ..+|..+=.++-+.|++++|++.|... -|...|.-+...|.
T Consensus 1088 ~i~nldrAiE~Aervn------~------p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~---- 1145 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------E------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN---- 1145 (1630)
T ss_pred HHhhHHHHHHHHHhcC------C------HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHH----
Confidence 6667888888887651 1 268888889999999999999999664 36777888888888
Q ss_pred CCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccc
Q 004743 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~t 321 (732)
+.|++++|.+.+. |..+.. ++....+.+.-+ |++.+++++...+.+ .|+...
T Consensus 1146 ------~lGkyEEAIeyL~--------mArk~~-~e~~Idt~Lafa------YAKl~rleele~fI~-------~~n~ad 1197 (1630)
T 1xi4_A 1146 ------TSGNWEELVKYLQ--------MARKKA-RESYVETELIFA------LAKTNRLAELEEFIN-------GPNNAH 1197 (1630)
T ss_pred ------HcCCHHHHHHHHH--------HHHhhc-ccccccHHHHHH------HHhhcCHHHHHHHHh-------CCCHHH
Confidence 8899999999984 322211 232333447777 888888886444321 233333
Q ss_pred cchhhhhhccc-----cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004743 322 KLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (732)
Q Consensus 322 y~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~ 396 (732)
|. .+-+.+. ..|...+... ..|.. +...|++.|+++.|.+.+++- -|..+|.-+-.+
T Consensus 1198 ~~--~iGd~le~eg~YeeA~~~Y~kA---------~ny~r-LA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1198 IQ--QVGDRCYDEKMYDAAKLLYNNV---------SNFGR-LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HH--HHHHHHHhcCCHHHHHHHHHhh---------hHHHH-HHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 32 1111111 3333344332 25666 999999999999999999876 366899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChH
Q 004743 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA--GKGD 474 (732)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~--g~~~ 474 (732)
|...|+++.|...... +..+...+..++..|-+.|.+++|..+++.-.... .-....|+-|-..|++. +++.
T Consensus 1260 cve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 9999999998887653 33455667789999999999999999997665332 22334555555555553 4455
Q ss_pred HHHHHHH
Q 004743 475 RVYYLLH 481 (732)
Q Consensus 475 ~A~~l~~ 481 (732)
++.++|.
T Consensus 1334 Ehlk~f~ 1340 (1630)
T 1xi4_A 1334 EHLELFW 1340 (1630)
T ss_pred HHHHHHH
Confidence 5555554
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.79 E-value=0.00057 Score=76.13 Aligned_cols=163 Identities=8% Similarity=-0.095 Sum_probs=134.9
Q ss_pred cccccccccccccccccccCCh-hHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHH
Q 004743 279 GQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (732)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~-~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (732)
..|..+-.. +...|++ ++|...|++..+.. |+ +...|..
T Consensus 103 ~~~~~lg~~------~~~~g~~~~~A~~~~~~al~~~--p~-------------------------------~~~a~~~- 142 (474)
T 4abn_A 103 QALMLKGKA------LNVTPDYSPEAEVLLSKAVKLE--PE-------------------------------LVEAWNQ- 142 (474)
T ss_dssp HHHHHHHHH------HTSSSSCCHHHHHHHHHHHHHC--TT-------------------------------CHHHHHH-
T ss_pred HHHHHHHHH------HHhccccHHHHHHHHHHHHhhC--CC-------------------------------CHHHHHH-
Confidence 335555555 8889999 99999999887652 32 1233445
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---------GDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~---------g~~~~A~~l~~~M~~~g~~pd~~ty~~l 428 (732)
+-..|.+.|++++|.+.|++..+. .|+...|..+-..|... |++++|.+.|++..+.. +-+...|..+
T Consensus 143 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 219 (474)
T 4abn_A 143 LGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYIL 219 (474)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 778899999999999999999876 47788999999999999 99999999999988763 2346788888
Q ss_pred HHHHHhc--------CChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 429 LSVFCNN--------GDVDKACSVEEHMLEHGVYP----EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 429 I~~~~~~--------g~~~~A~~l~~~M~~~gv~p----d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-.+|... |++++|.+.|+...+. .| +...|..+-.+|...|++++|...|++..+.
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888 9999999999999876 35 7888999999999999999999999998776
No 78
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.78 E-value=0.00081 Score=69.48 Aligned_cols=125 Identities=10% Similarity=-0.014 Sum_probs=87.9
Q ss_pred HHHHHHhc-cCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh------hH
Q 004743 358 RLSEDAKK-YAFQRGFEIYEKMCLD----EVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------SY 425 (732)
Q Consensus 358 lI~~~~k~-g~~~~A~~lf~~M~~~----gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~------ty 425 (732)
+-..|... |++++|.+.|++.... +-.+. ..+|+.+-..|...|++++|...|++........... .|
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 55677775 9999999999887653 11111 3568889999999999999999999988764332221 46
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--hcCChHHHHHHHHHHH
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP------ELEALLRVSV--EAGKGDRVYYLLHKLR 484 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~------ty~~Li~~~~--~~g~~~~A~~l~~~M~ 484 (732)
..+..++...|+.++|...|++..+. .|+.. .+..|+.+|. ..+++++|...|+++.
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 67777888999999999999987642 34322 3445566664 4566888888876653
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.72 E-value=0.00065 Score=79.77 Aligned_cols=160 Identities=13% Similarity=0.090 Sum_probs=131.2
Q ss_pred cccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHH
Q 004743 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (732)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~ 360 (732)
|+.|=.. +.+.|++++|...|++-.+. .|+ +...|++ +=.
T Consensus 12 l~nLG~~------~~~~G~~~eAi~~~~kAl~l--~P~-------------------------------~~~a~~n-Lg~ 51 (723)
T 4gyw_A 12 LNNLANI------KREQGNIEEAVRLYRKALEV--FPE-------------------------------FAAAHSN-LAS 51 (723)
T ss_dssp HHHHHHH------HHHTTCHHHHHHHHHHHHHH--CSC-------------------------------CHHHHHH-HHH
T ss_pred HHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCC-------------------------------CHHHHHH-HHH
Confidence 4555555 88999999999999987764 233 2234455 778
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~ 439 (732)
.|.+.|++++|.+.|++..+.. +-+...|+.|-.+|...|++++|.+.|++..+. .|+ ...|+.+-..|.+.|+++
T Consensus 52 ~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~ 128 (723)
T 4gyw_A 52 VLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIP 128 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 8999999999999999988753 235789999999999999999999999988765 354 678899999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 440 KACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 440 ~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
+|.+.|++..+.. | +...|..|...|...|++++|.+.+++..+
T Consensus 129 eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 129 EAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999988753 5 467888999999999999999988887644
No 80
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.71 E-value=0.001 Score=57.44 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=46.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+...+.+.|++++|.++|+++.... +.+..++..+...+...|++++|..+++++.... +.+..++..+...|...|+
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 92 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD 92 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC
Confidence 4445555555555555555555432 2234455555555555555555555555554431 1234444445555555555
Q ss_pred hHHHHHHHHHHHH
Q 004743 438 VDKACSVEEHMLE 450 (732)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (732)
+++|...++++.+
T Consensus 93 ~~~A~~~~~~~~~ 105 (125)
T 1na0_A 93 YDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.66 E-value=0.00063 Score=72.90 Aligned_cols=234 Identities=9% Similarity=-0.033 Sum_probs=156.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCC
Q 004743 200 MCSKRGDVMGAIRLYDKAQREG-IKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (732)
Q Consensus 200 a~~k~g~~~~A~~lf~~M~~~G-i~pd----~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g 274 (732)
.+...|++++|+..|++....- -.+| ..+|..+-..|. ..|+.+.|...+... -++....+
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~----------~~~~~~~A~~~~~~a----l~~~~~~~ 175 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY----------HMKQTHVSMYHILQA----LDIYQNHP 175 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HHHHHTST
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH----------HcCCcHHHHHHHHHH----HHHHHhCC
Confidence 4568899999999999988531 1133 345556666666 778888888887411 11111111
Q ss_pred -CC--CccccccccccccccccccccCChhHHHHHHHHHHHcCC-CCCccccchhhhhhccccccCCCchhhhccCCCCC
Q 004743 275 -MD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (732)
Q Consensus 275 -~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi-~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd 350 (732)
.. ...+++.+-.. +...|++++|...|.+..+..- .++... .
T Consensus 176 ~~~~~~~~~~~~lg~~------y~~~~~~~~A~~~~~~al~~~~~~~~~~~----------------------------~ 221 (378)
T 3q15_A 176 LYSIRTIQSLFVIAGN------YDDFKHYDKALPHLEAALELAMDIQNDRF----------------------------I 221 (378)
T ss_dssp TCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHH----------------------------H
T ss_pred CchhhHHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHHHHHcCCHHH----------------------------H
Confidence 11 12346666666 8899999999999987654310 001000 1
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCh
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI----NPRL 422 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~----~pd~ 422 (732)
..+++. +-..|...|++++|.+.|++.... +.+....++..+-..|.+.|+.++|...+++..+..- ....
T Consensus 222 ~~~~~~-lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 222 AISLLN-IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 123445 667888999999999999988761 2233367889999999999999999999998876522 1123
Q ss_pred hhHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 423 RSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 423 ~ty~~lI~~~~~~g~---~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
..++.+-..|...|+ +++|...++. .+..|+. ..+..|-..|.+.|+.++|...|++...
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555556666778 7777777765 3333333 3556788888999999999999988754
No 82
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.65 E-value=0.0014 Score=63.25 Aligned_cols=128 Identities=11% Similarity=-0.032 Sum_probs=107.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+-..+.+.|++++|.+.|++. +.|+...|..+-..|...|++++|...|++..... +.+...|..+-..|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 556778899999999999876 46789999999999999999999999999988763 3456788888899999999
Q ss_pred hHHHHHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh
Q 004743 438 VDKACSVEEHMLEHGV--------------YPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv--------------~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p 492 (732)
.++|.+.|+...+..- .|+ ...|..+-.+|.+.|+.++|...|++..+. .+..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 9999999999987531 121 267788888999999999999999998876 4443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.64 E-value=0.0052 Score=60.15 Aligned_cols=131 Identities=9% Similarity=-0.025 Sum_probs=108.2
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHH
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPAL 429 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI 429 (732)
...|.. +-..+.+.|++++|.+.|++.....-.++...+..+-.++...|++++|.+.+++..+. .| +...|..+-
T Consensus 7 ~~~~~~-~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 7 PNQLKN-EGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 344445 55678889999999999999988764478888888999999999999999999998865 34 456788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPE-E-------PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd-~-------~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..|...|+.++|.+.+++..+.. |+ . ..|..+=..+...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999999999999988753 44 3 34666777788999999999999999876
No 84
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.63 E-value=0.0019 Score=67.09 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=79.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCh-hhHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPRL-RSYGP 427 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~pd~-~ty~~ 427 (732)
+-..|.+ |++++|++.|++.... |-.+ -..+|+.+-..|...|++++|...|++.... +..+.. ..|..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 5556666 8899998888876542 2111 1457888888999999999999999887653 222222 35666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHH
Q 004743 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEE------PELEALLRVSVEAGKGDRVYYL 479 (732)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~------~ty~~Li~~~~~~g~~~~A~~l 479 (732)
+...+...|+.++|...|++.. . .|+. .....++.++ ..|+.+.+..+
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 7777778899999999999887 3 3421 2344555555 56777666553
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.61 E-value=0.0026 Score=62.36 Aligned_cols=142 Identities=10% Similarity=0.015 Sum_probs=109.5
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|++..+..-.++. ..+.. +-..|.+.|++++|.+
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~~~~~~--------------------------------~~~~~-~~~~~~~~~~~~~A~~ 63 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLTNNQDS--------------------------------VTAYN-CGVCADNIKKYKEAAD 63 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTCCH--------------------------------HHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhccCCCCc--------------------------------HHHHH-HHHHHHHhhcHHHHHH
Confidence 77889999999999988776422232 23334 6677889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-h-------hhHHHHHHHHHhcCChHHHHHHH
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-L-------RSYGPALSVFCNNGDVDKACSVE 445 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~-------~ty~~lI~~~~~~g~~~~A~~l~ 445 (732)
.|++..... +-+..+|..+-..|...|++++|...+++..+. .|+ . ..|..+=..+...|++++|.+.|
T Consensus 64 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 64 YFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp HHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 999988754 235678899999999999999999999998765 244 3 34666667788899999999999
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHhcCCh
Q 004743 446 EHMLEHGVYPE---EPELEALLRVSVEAGKG 473 (732)
Q Consensus 446 ~~M~~~gv~pd---~~ty~~Li~~~~~~g~~ 473 (732)
+...+. .|+ ...|..+-..|...|..
T Consensus 141 ~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 141 KHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 998865 565 45666777777766665
No 86
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.58 E-value=0.0062 Score=66.62 Aligned_cols=274 Identities=9% Similarity=-0.040 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C---CCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhc
Q 004743 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G---IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS 262 (732)
Q Consensus 191 ~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~-----G---i~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~ 262 (732)
...||.|=..+...|+.++|++.|++..+. + -.-...+|+.+-..|. ..|+.++|...+...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~----------~~g~~~~A~~~~~ka 120 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY----------HMGRLSDVQIYVDKV 120 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH----------HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH----------HcCChHHHHHHHHHH
Confidence 378999988999999999999999987531 1 1224678988888888 789999998888511
Q ss_pred cccchhhcccC-CC---CCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhc--c--ccc
Q 004743 263 TMNSTELGDSR-DM---DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDG--R--SNL 334 (732)
Q Consensus 263 ~~~s~em~~~~-g~---~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~--~--~~~ 334 (732)
.++.... +. ....+|+.+-.+ ......+++++|...|++..+. .|+...+..+..+-. + ...
T Consensus 121 ----~~i~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~ 190 (472)
T 4g1t_A 121 ----KHVCEKFSSPYRIESPELDCEEGWT----RLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPP 190 (472)
T ss_dssp ----HHHHHHSCCSSCCCCHHHHHHHHHH----HHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCC
T ss_pred ----HHHhHhcccccchhhHHHHHHHHHH----HHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchH
Confidence 1121110 11 111122222112 0022345789999999987765 466543321111111 1 122
Q ss_pred cCC---CchhhhccCCCCC-hhhhHHHHHHHHH----hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004743 335 ERG---PDDQSRKKDWSID-NQDADEIRLSEDA----KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA 406 (732)
Q Consensus 335 a~~---~~~~m~~~g~~pd-~~tyn~~lI~~~~----k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A 406 (732)
+.. .+..... +.|+ ...+.. +-..+. ..++.++|.+++++..... +.+..++..+-..|...|++++|
T Consensus 191 ~~~al~~~~~al~--l~p~~~~~~~~-l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A 266 (472)
T 4g1t_A 191 SQNAIDPLRQAIR--LNPDNQYLKVL-LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKA 266 (472)
T ss_dssp CCCTHHHHHHHHH--HCSSCHHHHHH-HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhh--cCCcchHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHH
Confidence 222 2222222 2343 333333 322333 3467889999999877653 45677899999999999999999
Q ss_pred HHHHHHHHHcCCCCC-hhhHHHHHHHHHh-------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004743 407 FDMVKRMKSLGINPR-LRSYGPALSVFCN-------------------NGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (732)
Q Consensus 407 ~~l~~~M~~~g~~pd-~~ty~~lI~~~~~-------------------~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (732)
...+++..+. .|+ ..+|..+-..|.. .+..++|...++...+.. ..+...|..+-..
T Consensus 267 ~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~ 343 (472)
T 4g1t_A 267 IELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASL 343 (472)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHH
T ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHH
Confidence 9999998765 354 3444444333322 123566777777766543 2334567778888
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 467 SVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 467 ~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
|...|++++|...|++..+. .+.+.
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~--~~~~~ 368 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSK--ELTPV 368 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHS--CCCHH
T ss_pred HHHhccHHHHHHHHHHHHhc--CCCCh
Confidence 99999999999999998876 55554
No 87
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.56 E-value=0.0043 Score=67.93 Aligned_cols=300 Identities=9% Similarity=-0.044 Sum_probs=180.0
Q ss_pred hhhcCCchHHHHHHHHhhc--CCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHH
Q 004743 161 EQRTNDSGQYKVRGITDEK--GSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G-IKL-GQYHYNV 231 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~--g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~-----G-i~p-d~~tyn~ 231 (732)
...|+.++|.+.|++-.+- ...++...+...++|+.+-..|...|++++|...|++..+- + ..+ ...+|+.
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~ 141 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHH
Confidence 4668899999988874331 11222222334578999999999999999999999987632 1 112 2455555
Q ss_pred HHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHH
Q 004743 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKE 311 (732)
Q Consensus 232 LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~ 311 (732)
+-.++... ..++.++|+..|. +..+. ...+...+..+... ...+...++.++|.+.|++-.
T Consensus 142 ~g~~~~~~--------~~~~y~~A~~~~~-------kal~~-~p~~~~~~~~~~~~---~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 142 EGWTRLKC--------GGNQNERAKVCFE-------KALEK-KPKNPEFTSGLAIA---SYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp HHHHHHHH--------CTTHHHHHHHHHH-------HHHHH-STTCHHHHHHHHHH---HHHHHHSCCCCCTHHHHHHHH
T ss_pred HHHHHHHH--------ccccHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH---HHHhcCchHHHHHHHHHHHHh
Confidence 44444311 2356889999995 32221 11122223222222 001344567778888887766
Q ss_pred HcCCCCCc-cccc-hhhhh-hcc-----ccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCC
Q 004743 312 NLGQFSNG-HMKL-NSQLL-DGR-----SNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (732)
Q Consensus 312 ~~gi~Pd~-~ty~-~~~li-~~~-----~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (732)
+. .|+. ..+. .+... ... -..|...+.+.... .|+ ...++. +-..|.+.|++++|.+.|++..+..
T Consensus 203 ~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 203 RL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRS-AAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp HH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHH-HHHHHHHcCchHHHHHHHHHHHHhC
Confidence 54 2433 2222 00000 000 12333344433322 233 344555 7889999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 004743 383 VPMNEASLTAVGRMAMS-------------------MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (732)
Q Consensus 383 i~pd~~ty~~LI~~~~~-------------------~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~ 443 (732)
+-+..+|..+-.+|.. .+..++|...++...... +.+..+|..+-..|...|++++|.+
T Consensus 278 -p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 278 -PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHH
Confidence 3345666666555432 223566777777766542 2346678888899999999999999
Q ss_pred HHHHHHHCCCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHhc
Q 004743 444 VEEHMLEHGVYPEEP--ELEALLR-VSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 444 l~~~M~~~gv~pd~~--ty~~Li~-~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|+...+....|... .+..+-. .+...|+.++|...|.+...-
T Consensus 356 ~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999998765433321 1222222 235678999999999887654
No 88
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.55 E-value=0.0027 Score=58.21 Aligned_cols=128 Identities=11% Similarity=0.008 Sum_probs=98.0
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004743 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (732)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~ 433 (732)
|.. +-..+...|++++|...|++..... +.+..+|..+...+...|++++|...+++..+.. +.+...|..+-..+.
T Consensus 16 ~~~-~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKT-QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHH-HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 334 5567788999999999999887753 3467888899999999999999999999887763 335677888888899
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty--~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
..|+.++|.+.|++..+.. ..+...+ -.+...+.+.|++++|...+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999988753 2233444 3334446778888999888876643
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.54 E-value=0.0047 Score=64.41 Aligned_cols=128 Identities=9% Similarity=0.086 Sum_probs=93.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHcCCCCChhhHHH
Q 004743 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPM-----NEASLTAVGRMAM--SMG--DGDMAFDMVKRMKSLGINPRLRSYGP 427 (732)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-----d~~ty~~LI~~~~--~~g--~~~~A~~l~~~M~~~g~~pd~~ty~~ 427 (732)
.++..|.+.|+.+.|.+++++|.+. .| +..+..-|+.++. ..| +..+|+.+|+++... .|+..+-..
T Consensus 141 l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~l 216 (310)
T 3mv2_B 141 LAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLG 216 (310)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHH
Confidence 3788999999999999999999875 56 3666777776733 334 899999999998654 365445556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC-----CC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh
Q 004743 428 ALSVFCNNGDVDKACSVEEHMLEH-----GV----YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (732)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~-----gv----~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p 492 (732)
++.++.+.|++++|.+.++.+.+. .- .-|..++--+|..+...|+ +|.+++.++... .|..
T Consensus 217 Lln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 217 LLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 666889999999999999876643 11 2345566455555555676 889999999887 4444
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.50 E-value=0.0015 Score=68.15 Aligned_cols=124 Identities=8% Similarity=-0.012 Sum_probs=98.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-----RLRSYGPALSV 431 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-----d~~ty~~lI~~ 431 (732)
+-..+...|++++|++++.+-...|- .-+...+-.++..+.+.|+.+.|.++++.|.+. .| +..+..-|..+
T Consensus 106 la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 106 LATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHH
Confidence 66888999999999999998766553 235678889999999999999999999999875 46 35555666666
Q ss_pred HHh--cC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 432 FCN--NG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 432 ~~~--~g--~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
+.. .| +..+|+.+|+++.+. .|+..+...|+.++.+.|++++|...++.+.+
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333 34 999999999999765 36655556666789999999999999997765
No 91
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.49 E-value=0.0035 Score=53.90 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004743 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (732)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (732)
..+|..+...+...|++++|.++++++.... +.+..++..+...+.+.|+.++|..+++++.+.. ..+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678889999999999999999999988763 3457788889999999999999999999998764 3467888999999
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 004743 467 SVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 467 ~~~~g~~~~A~~l~~~M~~~ 486 (732)
|...|+.++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999998776
No 92
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.44 E-value=0.0022 Score=72.78 Aligned_cols=130 Identities=8% Similarity=-0.093 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~ 432 (732)
.|.. +-..|.+.|++++|.+.|++..+.. +-+...|..+-..|...|++++|.+.+++..+.. +-+...|..+-..|
T Consensus 25 ~~~~-lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 25 AWLM-LADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHAL 101 (568)
T ss_dssp HHHH-HHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3444 7778889999999999999988764 3467889999999999999999999999988763 23467888888999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 004743 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGDRVYYLLHKLRTS 486 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~---g~~~~A~~l~~~M~~~ 486 (732)
.+.|+.++|.+.+++..+.. .-+...+..+...+... |+.++|.+.+++..+.
T Consensus 102 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999999999999988764 23567888899999999 9999999999998776
No 93
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.42 E-value=0.0042 Score=72.81 Aligned_cols=131 Identities=11% Similarity=0.055 Sum_probs=112.5
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHH
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPAL 429 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI 429 (732)
...|++ |=..|.+.|++++|.+.|++..+.. +-+..+|+.|-.+|.+.|++++|.+.|++..+. .|+ ...|..+=
T Consensus 9 a~al~n-LG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNN-LANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 445667 7788999999999999999988753 235789999999999999999999999998765 455 67888899
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..|.+.|++++|.+.|++..+.. .-+...|+.|-.+|.+.|++++|...|++..+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988753 234678999999999999999999999998775
No 94
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.40 E-value=0.0039 Score=54.12 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=72.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+-..+...|++++|.+.|++..... +.+...|..+...+...|++++|.+.+++..... +.+...|..+-..|...|+
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCC
Confidence 5566667777777777777766542 3356677777777777777777777777766542 2235566666667777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (732)
+++|...|++..+.. ..+...+..+..++.+.|+
T Consensus 96 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 96 HVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 777777777766543 1244555555555555444
No 95
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.33 E-value=0.0011 Score=71.12 Aligned_cols=234 Identities=10% Similarity=-0.063 Sum_probs=158.6
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---C-CHHHHHHH
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIK---L-GQYHYNVL 232 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p-~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~--Gi~---p-d~~tyn~L 232 (732)
....++..+|...|+...+.-. ..+..+ ...+|..+-..|...|+++.|+..|.+..+. ... | ...+++.+
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLI--FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGG--GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 4467899999999999754311 111222 3467888889999999999999999998742 111 1 13456666
Q ss_pred HHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHH
Q 004743 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (732)
Q Consensus 233 L~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (732)
=..|. ..|++++|...|... -++....+-. -..+|+.+-.. +...|++++|...|++-
T Consensus 191 g~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~lg~~------y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 191 ATNFL----------DLKQYEDAISHFQKA----YSMAEAEKQPQLMGRTLYNIGLC------KNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHH
T ss_pred HHHHH----------HhcCHHHHHHHHHHH----HHHHHHcCChHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence 66677 789999999998511 1111111111 12346667667 89999999999999887
Q ss_pred HHc----CCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----C
Q 004743 311 ENL----GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----E 382 (732)
Q Consensus 311 ~~~----gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----g 382 (732)
.+. +..|+ ...++.. +-..|.+.|++++|.+.+++.... +
T Consensus 251 l~~~~~~~~~~~-------------------------------~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 298 (383)
T 3ulq_A 251 IAVFEESNILPS-------------------------------LPQAYFL-ITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298 (383)
T ss_dssp HHHHHHTTCGGG-------------------------------HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccchh-------------------------------HHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 652 11111 1223445 778899999999999999987642 2
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 383 VPMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 383 i~pd~~ty~~LI~~~~~~g~---~~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
-+.....++.|-..|...|+ .++|..++++. +..|+. ..+..+-..|...|+.++|.+.++...+
T Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 299 DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22223446777788888998 77777777654 444443 4666788899999999999999988764
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.33 E-value=0.0042 Score=62.42 Aligned_cols=162 Identities=10% Similarity=0.002 Sum_probs=119.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+.+.|++++|...|++..+.. |+.... ...+.. +-..|.+.|++++|..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~----------------------------~~a~~~-lg~~~~~~~~~~~A~~ 73 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYG--RTHEWA----------------------------ADAQFY-LARAYYQNKEYLLAAS 73 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGC--SCSTTH----------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC--CCCcch----------------------------HHHHHH-HHHHHHHhCcHHHHHH
Confidence 678899999999999887752 332110 112223 6677889999999999
Q ss_pred HHHHHHhCCC-CCC-HHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCh-hhH-----------------
Q 004743 374 IYEKMCLDEV-PMN-EASLTAVGRMAMS--------MGDGDMAFDMVKRMKSLGINPRL-RSY----------------- 425 (732)
Q Consensus 374 lf~~M~~~gi-~pd-~~ty~~LI~~~~~--------~g~~~~A~~l~~~M~~~g~~pd~-~ty----------------- 425 (732)
.|++.....- .|+ ...+..+-.++.. .|++++|...|++..+.. |+. ..+
T Consensus 74 ~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~ 151 (261)
T 3qky_A 74 EYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQ 151 (261)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999987531 122 4567777778888 999999999999988752 432 233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHHhccCCCC
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALLRVSVEA----------GKGDRVYYLLHKLRTSVRKVS 491 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd----~~ty~~Li~~~~~~----------g~~~~A~~l~~~M~~~~~~~~ 491 (732)
..+-..|.+.|++++|...|+...+.. |+ ...+..+..+|... |++++|...|++..+. .|.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~ 227 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPD 227 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCC
Confidence 334667889999999999999998753 43 34666777777755 8899999999999887 544
Q ss_pred h
Q 004743 492 P 492 (732)
Q Consensus 492 p 492 (732)
.
T Consensus 228 ~ 228 (261)
T 3qky_A 228 S 228 (261)
T ss_dssp C
T ss_pred C
Confidence 3
No 97
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.30 E-value=0.0041 Score=54.45 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~ 431 (732)
..|.. +-..+.+.|++++|.+.|++..... +.+...|..+...|...|++++|.+.+++..+.. ..+...|..+-..
T Consensus 17 ~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKN-KGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHH-HHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 34444 5566667777777777777766542 2355666666666777777777777776665542 2234555556666
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 004743 432 FCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~ 451 (732)
|.+.|++++|.+.|++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 66666666666666665543
No 98
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.23 E-value=0.013 Score=60.21 Aligned_cols=163 Identities=6% Similarity=-0.068 Sum_probs=117.6
Q ss_pred ccccCChhHHHHHHHHHHHcCC-CCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi-~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~ 372 (732)
+...|++++|..++++...... .|+... ...|...+...+...+++++|.
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~-----------------------------~~~~~~~l~~~~~~~~~~~~Ai 135 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQ-----------------------------FLQWQYYVAAYVLKKVDYEYCI 135 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHH-----------------------------HHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHH-----------------------------HHHHHHHHHHHHHcccCHHHHH
Confidence 7888999999999998876321 111100 0112222556677778999999
Q ss_pred HHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-hhhHHHHHHHHHhcCChHHH
Q 004743 373 EIYEKMCLDEVP-MN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPR-LRSYGPALSVFCNNGDVDKA 441 (732)
Q Consensus 373 ~lf~~M~~~gi~-pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g~~pd-~~ty~~lI~~~~~~g~~~~A 441 (732)
+.|++....... ++ ..+|+.|-..|...|++++|...|++..+. +..+. ..+|..+-..|.+.|+.++|
T Consensus 136 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A 215 (293)
T 3u3w_A 136 LELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES 215 (293)
T ss_dssp HHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 999998874222 23 336999999999999999999999988742 22233 34788899999999999999
Q ss_pred HHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 004743 442 CSVEEHMLE----HGVYPE-EPELEALLRVSVEAGK-GDRVYYLLHKLRT 485 (732)
Q Consensus 442 ~~l~~~M~~----~gv~pd-~~ty~~Li~~~~~~g~-~~~A~~l~~~M~~ 485 (732)
.+.+++..+ .+..+. ...|..+-.+|.+.|+ .++|...+++...
T Consensus 216 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999987754 333333 5678888888899995 6999998887643
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.22 E-value=0.0079 Score=58.47 Aligned_cols=176 Identities=13% Similarity=0.073 Sum_probs=115.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|++..+. .|+....- . ..+... ........++. +-..|.+.|++++|..
T Consensus 14 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~--~-~~~~~~------------~~~~~~~~~~~-lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIAL--NIDRTEMY--Y-WTNVDK------------NSEISSKLATE-LALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHHHH--H-HHHSCT------------TSHHHHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHH--H-Hhhhcc------------hhhhhHHHHHH-HHHHHHHCCCHHHHHH
Confidence 66789999999999988765 24322110 0 000000 00001111222 5577889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCC--hHHHHHHHHHHHH
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD--VDKACSVEEHMLE 450 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~--~~~A~~l~~~M~~ 450 (732)
.|++..+.. +-+...|..+-..|...|++++|...|++..+. .|+ ...|..+-..|...|+ .+.+...+....
T Consensus 76 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~- 151 (208)
T 3urz_A 76 FYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS- 151 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-
Confidence 999988764 346789999999999999999999999998875 354 5677777666665553 344555555543
Q ss_pred CCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHH
Q 004743 451 HGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD 496 (732)
Q Consensus 451 ~gv~pd~~ty--~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~ 496 (732)
.|+...| ..+-.++...|+.++|...|++..+. .|+.....
T Consensus 152 ---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 152 ---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred ---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 4554433 22333456678999999999999876 66655333
No 100
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.17 E-value=0.0042 Score=58.26 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=95.0
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCh--
Q 004743 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-FCNNGDV-- 438 (732)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~-~~~~g~~-- 438 (732)
+...|++++|.+.|++..... +.+...|..+-..|...|++++|...|++..+.. +.+...|..+-.. |...|+.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345678888998888877653 4567889999999999999999999999987653 2245566666667 7788998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
++|...++...+.. .-+...+..+-..|...|+.++|...|++....
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999998764 234677888888999999999999999998876
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.15 E-value=0.011 Score=58.15 Aligned_cols=158 Identities=10% Similarity=0.034 Sum_probs=111.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|+++.... |+.... ...+.. +-..|.+.|++++|.+
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~----------------------------~~a~~~-lg~~~~~~~~~~~A~~ 62 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRY--PFGPYS----------------------------QQVQLD-LIYAYYKNADLPLAQA 62 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTSTTH----------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHH----------------------------HHHHHH-HHHHHHhcCCHHHHHH
Confidence 667899999999999988752 322110 011223 6678889999999999
Q ss_pred HHHHHHhCCCC-CCH-HHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCChh-hHH------
Q 004743 374 IYEKMCLDEVP-MNE-ASLTAVGRMAMS------------------MGDGDMAFDMVKRMKSLGINPRLR-SYG------ 426 (732)
Q Consensus 374 lf~~M~~~gi~-pd~-~ty~~LI~~~~~------------------~g~~~~A~~l~~~M~~~g~~pd~~-ty~------ 426 (732)
.|++..+..-. +.. ..+-.+-.++.. .|+.++|...|++..+. .|+.. .+.
T Consensus 63 ~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 63 AIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH
T ss_pred HHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence 99998875321 221 133333333332 57899999999998865 35432 221
Q ss_pred -----------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 427 -----------PALSVFCNNGDVDKACSVEEHMLEHGVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 427 -----------~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~----~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+-..|.+.|+.++|...|+.+.+.- |+. ..+..+..+|.+.|+.++|...++.+...
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 23446788899999999999988753 442 46778888999999999999999998876
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.13 E-value=0.0084 Score=62.18 Aligned_cols=203 Identities=9% Similarity=0.014 Sum_probs=135.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcccccc
Q 004743 204 RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY 283 (732)
Q Consensus 204 ~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~ 283 (732)
.|++++|.+++++..+.-- .. +.. ..|++++|...|. ...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~---------~~~~~~~A~~~~~-------~a~------------- 43 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMK---------WKPDYDSAASEYA-------KAA------------- 43 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSS---------CSCCHHHHHHHHH-------HHH-------------
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccC---------CCCCHHHHHHHHH-------HHH-------------
Confidence 5678889999888775311 10 110 1467788888874 221
Q ss_pred ccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCC-ChhhhHHHHHHHH
Q 004743 284 GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI-DNQDADEIRLSED 362 (732)
Q Consensus 284 LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~ 362 (732)
.. |...|++++|...|.+..+.... .|-.+ -..+|+. +-..|
T Consensus 44 --~~------~~~~g~~~~A~~~~~~al~~~~~----------------------------~~~~~~~a~~~~~-lg~~~ 86 (307)
T 2ifu_A 44 --VA------FKNAKQLEQAKDAYLQEAEAHAN----------------------------NRSLFHAAKAFEQ-AGMML 86 (307)
T ss_dssp --HH------HHHTTCHHHHHHHHHHHHHHHHH----------------------------TTCHHHHHHHHHH-HHHHH
T ss_pred --HH------HHHcCCHHHHHHHHHHHHHHHHH----------------------------cCCHHHHHHHHHH-HHHHH
Confidence 12 67778888888888776543100 00000 0124445 66778
Q ss_pred HhccCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHH
Q 004743 363 AKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVF 432 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~ty~~lI~~~ 432 (732)
.+.|++++|.+.|++.... |-.. -..+|+.+-..|.. |++++|...+++.... |-.+ -..+|+.+-..|
T Consensus 87 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 165 (307)
T 2ifu_A 87 KDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLL 165 (307)
T ss_dssp HHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 8889999999998875532 2111 13577888888888 9999999999876543 2111 145778888899
Q ss_pred HhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 433 CNNGDVDKACSVEEHMLEH----GVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~----gv~pd~-~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
.+.|++++|.+.|++..+. +..+.. ..+..+..++...|+.++|...|++..
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 166 VRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999988753 222222 256667777778899999999999987
No 103
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.07 E-value=0.004 Score=66.53 Aligned_cols=234 Identities=9% Similarity=-0.089 Sum_probs=156.3
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC---CC-CHHHHHHH
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GI---KL-GQYHYNVL 232 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p-~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~--Gi---~p-d~~tyn~L 232 (732)
....++..+|...|++..+... ..+..| ...+|..+-..|...|+++.|+..+.+..+. .. .+ ...+++.+
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELP--FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGG--GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3466899999999998754321 111112 2357788888999999999999999998742 11 11 13456666
Q ss_pred HHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHH
Q 004743 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (732)
Q Consensus 233 L~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (732)
=..|. ..|++++|...|... -++....+-. ...+++.|-.. +...|++++|...|++-
T Consensus 189 g~~y~----------~~~~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~lg~~------y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 189 AGNYD----------DFKHYDKALPHLEAA----LELAMDIQNDRFIAISLLNIANS------YDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHH
T ss_pred HHHHH----------HhCCHHHHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence 66666 789999999998511 1111111111 12336666666 88999999999999887
Q ss_pred HHcC---CCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----CC
Q 004743 311 ENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV 383 (732)
Q Consensus 311 ~~~g---i~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi 383 (732)
.+.. ..|+ ...++.. +-..|.+.|+.++|.+.+++.... +-
T Consensus 249 l~~~~~~~~~~-------------------------------~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 249 AKVSREKVPDL-------------------------------LPKVLFG-LSWTLCKAGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp HHHHHHHCGGG-------------------------------HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHhhCChh-------------------------------HHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 6520 0111 1223334 678899999999999999988763 22
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 384 PMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~---~~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
+.....++.+-..|...|+ +++|...+++ .+..|+. ..+..+-..|...|+.++|.+.|+...+
T Consensus 297 ~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234556666667777888 7777777765 4444443 4556677889999999999999988753
No 104
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.06 E-value=0.0028 Score=65.38 Aligned_cols=164 Identities=7% Similarity=-0.076 Sum_probs=119.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGF 372 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~ 372 (732)
|...|++++|...|.+..+... ..|-.++ ..+|+. +-..|.+.|++++|.
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~a~~~~~-lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQK----------------------------KAGNEDEAGNTYVE-AYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHH----------------------------HTTCHHHHHHHHHH-HHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHH----------------------------HhCCHHHHHHHHHH-HHHHHHHCCCHHHHH
Confidence 7788999999999987654310 0000011 234556 778899999999999
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCChHHH
Q 004743 373 EIYEKMCLD----EVPM-NEASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDVDKA 441 (732)
Q Consensus 373 ~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~-g~~~~A~~l~~~M~~~----g~~pd-~~ty~~lI~~~~~~g~~~~A 441 (732)
..|++...- |-.+ -..+|+.+-..|... |++++|...|++..+. +-.+. ..+|+.+-..|.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999877642 2111 135788899999996 9999999999987653 11111 35688888999999999999
Q ss_pred HHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 442 CSVEEHMLEHGVYPEE------PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 442 ~~l~~~M~~~gv~pd~------~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+.|++..+....... ..|..+..++...|+.++|...|++....
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999876533222 15677778889999999999999987653
No 105
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.06 E-value=0.0048 Score=52.06 Aligned_cols=94 Identities=10% Similarity=0.003 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 004743 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP--EEPELEALLRVSV 468 (732)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p--d~~ty~~Li~~~~ 468 (732)
..+...+...|++++|...|++..+.. ..+...|..+-..+...|++++|.+.++...+.. .. +...|..+-..|.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 333444444444444444444444331 1223344444444555555555555555554432 11 3445555555555
Q ss_pred hc-CChHHHHHHHHHHHhc
Q 004743 469 EA-GKGDRVYYLLHKLRTS 486 (732)
Q Consensus 469 ~~-g~~~~A~~l~~~M~~~ 486 (732)
+. |+.++|.+.|++....
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 55 5555555555555444
No 106
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.04 E-value=0.019 Score=48.62 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (732)
..|..+...+...|++++|...|++..... +.+...|..+-..+...|++++|...+++..+.. ..+...|..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344555555556666666666666555431 1234455555555566666666666666655442 12345555566666
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 004743 468 VEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M~~~ 486 (732)
...|+.++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666665544
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.02 E-value=0.0038 Score=58.82 Aligned_cols=124 Identities=8% Similarity=0.100 Sum_probs=80.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhc
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNN 435 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~-~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~ 435 (732)
+-..|.+.|++++|...|++..... |+...+..+... +...+...+|...+++..+. .|+ ...+..+-..+...
T Consensus 46 la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~ 121 (176)
T 2r5s_A 46 KADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQV 121 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 6667778888888888888765543 344333222111 11222333467777766654 343 56777777788888
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 436 GDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
|+.++|...|+++.+..-.+ +...+..|...|...|+.++|...|++...
T Consensus 122 g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 122 GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 88888888888887654222 245677788888888888888888776543
No 108
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.01 E-value=0.011 Score=51.27 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YPE----EPELEA 462 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv--~pd----~~ty~~ 462 (732)
.|..+...+...|++++|...|++..... +.+...|..+-..|...|++++|...++......- .++ ...|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444444555555555555555544431 12334444444555555555555555555443210 111 444555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 004743 463 LLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 463 Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+-..|.+.|++++|...|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555566666666666666665554
No 109
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.98 E-value=0.013 Score=61.95 Aligned_cols=130 Identities=11% Similarity=-0.025 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--------------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (732)
.|.. +-..|.+.|++++|...|++.....-... ..+|..+-.+|.+.|++++|...+++..+..
T Consensus 149 ~~~~-~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 149 IVKE-RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHH-HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHH-HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444 66788899999999999999887542211 5899999999999999999999999988763
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 004743 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV-YYLLHKLRT 485 (732)
Q Consensus 419 ~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A-~~l~~~M~~ 485 (732)
+.+...|..+-.+|...|++++|...|+...+.. .-+...+..+-..+.+.|+.++| ..++..|-.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357788888899999999999999999988763 23567788888888889998888 456666644
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.97 E-value=0.012 Score=56.60 Aligned_cols=121 Identities=7% Similarity=-0.088 Sum_probs=96.7
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|++. +.| +...|.. +-..|.+.|++++|.+
T Consensus 16 ~~~~~~~~~A~~~~~~a----~~~--------------------------------~~~~~~~-lg~~~~~~g~~~~A~~ 58 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAV----QDP--------------------------------HSRICFN-IGCMYTILKNMTEAEK 58 (213)
T ss_dssp HHHTTCHHHHHHHHHTS----SSC--------------------------------CHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH----cCC--------------------------------ChHHHHH-HHHHHHHcCCHHHHHH
Confidence 67789999999988744 223 2334445 7788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------CCCC-hhhHHHHHHHHHhcCCh
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--------------INPR-LRSYGPALSVFCNNGDV 438 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g--------------~~pd-~~ty~~lI~~~~~~g~~ 438 (732)
.|++..... +.+...|..+-.+|...|++++|...|++..+.. ..|+ ...|..+-..|.+.|+.
T Consensus 59 ~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 59 AFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 999988764 4567899999999999999999999999988752 1111 26777788899999999
Q ss_pred HHHHHHHHHHHHCC
Q 004743 439 DKACSVEEHMLEHG 452 (732)
Q Consensus 439 ~~A~~l~~~M~~~g 452 (732)
++|.+.|+...+..
T Consensus 138 ~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 138 KKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988653
No 111
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.96 E-value=0.025 Score=47.79 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~ 432 (732)
.|.. +...+...|++++|.+.|++..... +.+...|..+...+...|++++|...+++..+.. +.+...|..+-..+
T Consensus 6 ~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKE-KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3445 6678889999999999999988753 3477889999999999999999999999988763 23567888888999
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 004743 433 CNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~g 452 (732)
...|+.++|.+.++...+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999988653
No 112
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.95 E-value=0.016 Score=50.55 Aligned_cols=101 Identities=9% Similarity=-0.037 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
+.+...|..+...+...|++++|...|++..+.. ..+...|..+-..|...|+.++|.+.+++..+.. ..+...|..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 4567788999999999999999999999987652 2357788888889999999999999999988764 3357788889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 004743 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 464 i~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-..|.+.|++++|...|++....
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999998765
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.95 E-value=0.022 Score=58.43 Aligned_cols=163 Identities=6% Similarity=-0.069 Sum_probs=115.9
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...+.+..+..-. +..... ....+.. +...+...|++++|.+
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~--------------------------~~~~~~~-~~~~~~~~~~~~~A~~ 136 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEY-HPEFQQ--------------------------FLQWQYY-VAAYVLKKVDYEYCIL 136 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCC-CHHHHH--------------------------HHHHHHH-HHHHHHTSSCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhccccC-ChhHHH--------------------------HHHHHHH-HHHHHhcCCCHHHHHH
Confidence 77889999999999877664211 000000 0111122 4556778899999999
Q ss_pred HHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-----hhhHHHHHHHHHhcCChHHHH
Q 004743 374 IYEKMCLDE---VPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPR-----LRSYGPALSVFCNNGDVDKAC 442 (732)
Q Consensus 374 lf~~M~~~g---i~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-g~~pd-----~~ty~~lI~~~~~~g~~~~A~ 442 (732)
.|++..... ..+. ..+|+.+-..|...|++++|...+++..+. ...|+ ..+|+.+-..|.+.|++++|.
T Consensus 137 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al 216 (293)
T 2qfc_A 137 ELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence 999887532 1222 458999999999999999999999987632 11122 258888899999999999999
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 004743 443 SVEEHMLEH----GVYPE-EPELEALLRVSVEAGKGDRV-YYLLHKLR 484 (732)
Q Consensus 443 ~l~~~M~~~----gv~pd-~~ty~~Li~~~~~~g~~~~A-~~l~~~M~ 484 (732)
+.+++..+. +.... ..+|..+-..|.+.|+.++| ...+++-.
T Consensus 217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999887643 22222 56788888899999999999 77676643
No 114
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.94 E-value=0.0072 Score=57.45 Aligned_cols=129 Identities=14% Similarity=-0.016 Sum_probs=96.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC--ChhhHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP--RLRSYG 426 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~----~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~p--d~~ty~ 426 (732)
+-..|...|++++|.+.|++... .|..| ...+++.+-..|...|++++|...+++.... +-.| ....+.
T Consensus 32 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 111 (203)
T 3gw4_A 32 LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAY 111 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 66778889999999999998775 22222 3467888888999999999999999876543 2122 245677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 427 PALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~----gv~p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+-..+...|++++|...+++..+. +-.+ -..++..+-..+...|++++|...+++..+.
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 112 EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 7788889999999999999887642 2111 1234577778889999999999999876543
No 115
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.93 E-value=0.0081 Score=52.13 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----hhhHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI--NPR----LRSYG 426 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~--~pd----~~ty~ 426 (732)
.|.. +-..+...|++++|...|++..... +.+...|..+...|...|++++|...+++.....- .++ ..+|.
T Consensus 6 ~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKE-LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHH-HHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444 6678889999999999999988764 45778899999999999999999999999876531 222 66788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004743 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (732)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (732)
.+-..|...|++++|.+.|+...+.. |+...+..+-..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 88899999999999999999998753 565555544433
No 116
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.91 E-value=0.052 Score=62.99 Aligned_cols=138 Identities=9% Similarity=-0.024 Sum_probs=103.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLD-E-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~-g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~ 435 (732)
.+...-+.|.++.|..+|....+. + ..+......+.|.-.+ .++.+.|.++|+...+. +.-+...+...+......
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC
Confidence 566667788999999999999876 3 2344444444444322 35699999999988876 333455567888888889
Q ss_pred CChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHH
Q 004743 436 GDVDKACSVEEHMLEHGVYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~p--d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~I~ 499 (732)
|+.+.|..+|+......-.+ ....|...++.-.+.|+.+.+..+.+++.+. .|..+....+.
T Consensus 518 ~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~ 581 (679)
T 4e6h_A 518 NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFT 581 (679)
T ss_dssp TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHH
Confidence 99999999999988764322 3467888999889999999999999999998 66655555533
No 117
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.90 E-value=0.026 Score=48.66 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004743 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (732)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (732)
+...|..+...+...|++++|...+++..... +.+...|..+-..+...|++++|.+.++...+.. ..+...|..+-.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45678888889999999999999999987763 3367788888899999999999999999988763 335778888889
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 004743 466 VSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 466 ~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|.+.|+.++|...|++....
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999998776
No 118
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.89 E-value=0.013 Score=49.33 Aligned_cols=97 Identities=9% Similarity=0.020 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALS 430 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p--d~~ty~~lI~ 430 (732)
.|.. +-..+.+.|++++|...|++..+.. +.+...|..+-..+...|++++|.+.+++..+.. .. +...|..+-.
T Consensus 8 ~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYL-EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGG-HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHH-HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 3444 6677889999999999999988754 3467889999999999999999999999988763 22 4778888889
Q ss_pred HHHhc-CChHHHHHHHHHHHHCC
Q 004743 431 VFCNN-GDVDKACSVEEHMLEHG 452 (732)
Q Consensus 431 ~~~~~-g~~~~A~~l~~~M~~~g 452 (732)
.+.+. |+.++|.+.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999987654
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.88 E-value=0.0077 Score=61.96 Aligned_cols=125 Identities=6% Similarity=0.007 Sum_probs=75.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI-~~~~~~g 436 (732)
+-..+.+.|++++|.+.|++..... +-+...+..|...+...|++++|..++++.... .|+........ ..+...+
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhc
Confidence 3445566677777777777766542 224566666777777777777777777665433 34433222221 2245556
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.+.|.+.+++..+.. ..+...+..+-..|...|+.++|...|.++...
T Consensus 200 ~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 200 ADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp TSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666666666666543 234556666666777777777777777776665
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.85 E-value=0.018 Score=65.14 Aligned_cols=119 Identities=11% Similarity=-0.009 Sum_probs=86.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 004743 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l 444 (732)
.|++++|.+.|++..+.. +-+...|..+-..|...|++++|.+.+++..+.. +-+...|..+-..|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367889999999877643 3357889999999999999999999999987652 23467888888999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 445 EEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988764 335778889999999999999999999998776
No 121
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.83 E-value=0.014 Score=68.12 Aligned_cols=124 Identities=10% Similarity=-0.027 Sum_probs=105.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g 436 (732)
+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|.+.|++..+. .| +...|..+-..|.+.|
T Consensus 439 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g 515 (681)
T 2pzi_A 439 EVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAG 515 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC
Confidence 6678889999999999999988753 346788999999999999999999999998765 34 4567788888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
++++ .+.|++..+.. .-+...|..+-.+|.+.|+.++|...|++..+.
T Consensus 516 ~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 516 NTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp CCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred ChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 9999 99999988754 235678888999999999999999999987654
No 122
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.82 E-value=0.058 Score=55.22 Aligned_cols=166 Identities=10% Similarity=-0.006 Sum_probs=113.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhh
Q 004743 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (732)
Q Consensus 190 ~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em 269 (732)
+...+..+-..+.+.|++++|+.+|++..... +-+...+..|-..+. ..|+.++|...+. ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~----------~~g~~~~A~~~l~-------~~ 177 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLI----------ALNRSEDAEAVLX-------TI 177 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHH----------HTTCHHHHHHHHT-------TS
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH----------HCCCHHHHHHHHH-------hC
Confidence 33566677788889999999999999998653 224556666666666 6677777777774 11
Q ss_pred cccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCC
Q 004743 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (732)
Q Consensus 270 ~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p 349 (732)
... .|+..
T Consensus 178 ~~~-------------------------------------------~p~~~----------------------------- 185 (287)
T 3qou_A 178 PLQ-------------------------------------------DQDTR----------------------------- 185 (287)
T ss_dssp CGG-------------------------------------------GCSHH-----------------------------
T ss_pred chh-------------------------------------------hcchH-----------------------------
Confidence 111 11111
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRLRSYGPA 428 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~ty~~l 428 (732)
.......-.+.+.+..++|.+.|++..... +.+...+..+-..|...|++++|...|.+..+..-. .+...+..+
T Consensus 186 ---~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 186 ---YQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp ---HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred ---HHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 001112233455666777888888777653 456788888999999999999999999988876321 125678888
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 004743 429 LSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~ 449 (732)
...|...|+.++|...|++-.
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHH
Confidence 888888888888888777644
No 123
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.80 E-value=0.066 Score=53.41 Aligned_cols=129 Identities=11% Similarity=0.028 Sum_probs=99.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-hhhHHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPR-LRSYGPALSVF 432 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd---~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~-~pd-~~ty~~lI~~~ 432 (732)
+-..+.+.|++++|.+.|++..... +-+ ...+..+-.+|.+.|++++|...|+...+..- .|. ...+..+-.++
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCY 99 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Confidence 4567788999999999999998764 122 67788889999999999999999999887621 122 34555566677
Q ss_pred Hh--------cCChHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 433 CN--------NGDVDKACSVEEHMLEHGVYPEE-PEL-----------------EALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 433 ~~--------~g~~~~A~~l~~~M~~~gv~pd~-~ty-----------------~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.. .|+.++|...|++..+.. |+. ..+ ..+-..|.+.|++++|...|++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 100 YKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77 999999999999998753 332 222 34566788999999999999999876
Q ss_pred cCCCC
Q 004743 487 VRKVS 491 (732)
Q Consensus 487 ~~~~~ 491 (732)
.|.
T Consensus 178 --~p~ 180 (261)
T 3qky_A 178 --YPD 180 (261)
T ss_dssp --CTT
T ss_pred --CCC
Confidence 444
No 124
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.79 E-value=0.0059 Score=56.16 Aligned_cols=120 Identities=9% Similarity=0.022 Sum_probs=93.5
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 362 DAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
+...|++++|++.+...... .| +...+-.|-..|.+.|++++|.+.|++..+.. +-+...|..+-..|.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 34567889999988876543 23 33456678889999999999999999987752 2356788888899999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHhc
Q 004743 441 ACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYL-LHKLRTS 486 (732)
Q Consensus 441 A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~l-~~~M~~~ 486 (732)
|...|+...+.. | +...|..+-..|.+.|+.++|.+. +++..+.
T Consensus 84 A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 84 AVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999988753 5 467888888899999998876654 5665554
No 125
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.75 E-value=0.031 Score=49.28 Aligned_cols=100 Identities=12% Similarity=-0.058 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004743 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (732)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (732)
.+...|..+-..+...|++++|...|.+..... +.+...|..+-..|...|++++|...++...+.. .-+...|..+-
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345666667777777777777777777665542 2235566666667777777777777777766543 22456666777
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 004743 465 RVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 465 ~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+|...|++++|...|++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777766543
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.73 E-value=0.03 Score=51.77 Aligned_cols=91 Identities=11% Similarity=-0.023 Sum_probs=43.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+-..+.+.|++++|...|++..... +-+...|..+-.+|...|++++|...|++..+.. +-+...|..+=.+|.+.|+
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKA 119 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 3344445555555555555554432 2234455555555555555555555555544431 1123344444445555555
Q ss_pred hHHHHHHHHHHHH
Q 004743 438 VDKACSVEEHMLE 450 (732)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (732)
.++|...|+...+
T Consensus 120 ~~eA~~~~~~al~ 132 (151)
T 3gyz_A 120 PLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 127
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.68 E-value=0.12 Score=50.58 Aligned_cols=88 Identities=13% Similarity=0.044 Sum_probs=65.9
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNE-ASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~-~ty-----------------~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 422 (732)
.+...|+.++|...|++..+.. |+. ..+ -.+-..|.+.|++++|...|+++.+. .|+.
T Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~ 180 (225)
T 2yhc_A 105 SDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDT 180 (225)
T ss_dssp ---CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTS
T ss_pred hhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCC
Confidence 3445678999999999988753 332 222 23455678899999999999998876 2442
Q ss_pred ----hhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 423 ----RSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 423 ----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 181 ~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 181 QATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 467778899999999999999999888764
No 128
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.67 E-value=0.0094 Score=54.73 Aligned_cols=110 Identities=12% Similarity=0.054 Sum_probs=85.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g 436 (732)
+=..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|...|++++|...|++..+. .|+ ...|..+-..|.+.|
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 6678999999999999999988754 347889999999999999999999999998875 354 677888888999999
Q ss_pred ChHHHHHH-HHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 004743 437 DVDKACSV-EEHMLEHGVYPE-EPELEALLRVSVEAGK 472 (732)
Q Consensus 437 ~~~~A~~l-~~~M~~~gv~pd-~~ty~~Li~~~~~~g~ 472 (732)
+.++|.+. ++...+. .|+ ...|...-..+...|+
T Consensus 114 ~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 114 VTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp SSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred ChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 99876655 5666653 354 4556655555555553
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.66 E-value=0.022 Score=52.74 Aligned_cols=123 Identities=4% Similarity=-0.100 Sum_probs=94.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g 436 (732)
+.+.+...+.++++.+ +.| +...+..+-..+.+.|++++|...|++..... +-+...|..+=.+|...|
T Consensus 15 l~~~~~~~~~l~~al~---------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 84 (151)
T 3gyz_A 15 VIDAINSGATLKDINA---------IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKE 84 (151)
T ss_dssp HHHHHHTSCCTGGGCC---------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCHHHHhC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHc
Confidence 4455555555444432 334 33467777888999999999999999988762 235677888888999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
++++|.+.|+...+.. .-+...|..+-.+|.+.|+.++|...|++..+. .+.+.
T Consensus 85 ~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 85 QFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp CHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred cHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 9999999999998764 224667888889999999999999999999887 55554
No 130
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.65 E-value=0.055 Score=48.03 Aligned_cols=90 Identities=10% Similarity=-0.019 Sum_probs=46.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~ 433 (732)
+-..+.+.|++++|.+.|++.... .|+ ...|..+...|...|++++|...+++..+.. +.+...|..+-..|.
T Consensus 34 ~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 34 EGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHH
Confidence 445555566666666666665543 244 3455555555555555555555555544431 112334444444455
Q ss_pred hcCChHHHHHHHHHHHH
Q 004743 434 NNGDVDKACSVEEHMLE 450 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~ 450 (732)
..|+.++|...|++..+
T Consensus 111 ~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 111 KLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.64 E-value=0.13 Score=52.33 Aligned_cols=96 Identities=5% Similarity=-0.069 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCL---D-EVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR- 421 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~---~-gi~p--d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~pd- 421 (732)
+|+. +-..|...|++++|.+.|++... . +-.+ ...+|+.+-..|...|++++|...+++..+. +....
T Consensus 157 ~~~~-lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 157 IENA-IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4455 77788899999999999998762 1 1111 1258899999999999999999999986543 21111
Q ss_pred hhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 004743 422 LRSYGPALSVFCNNGDVDKA-CSVEEHML 449 (732)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A-~~l~~~M~ 449 (732)
..+|..+-..|.+.|+.++| ...++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56777788889999999999 77676644
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.64 E-value=0.034 Score=49.32 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=53.3
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~ 439 (732)
..|.+.|++++|.+.|++..+.. +.+..+|..+-.+|.+.|++++|...|++..+.. +.+...|..+-.+|...|+++
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 98 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWS 98 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHH
Confidence 45566666777777766655542 3355666666666666666666666666655431 123445555556666666666
Q ss_pred HHHHHHHHHHH
Q 004743 440 KACSVEEHMLE 450 (732)
Q Consensus 440 ~A~~l~~~M~~ 450 (732)
+|.+.|+...+
T Consensus 99 ~A~~~~~~al~ 109 (126)
T 4gco_A 99 KAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 133
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.62 E-value=0.063 Score=47.63 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 004743 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (732)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (732)
.+...+..+...+...|++++|.+.|++..+. .|+ ...|..+-..|...|++++|.+.++...+.. ..+...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 46778888899999999999999999998765 466 6788888889999999999999999988753 2357788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCCCh-hHHHHHHH
Q 004743 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-STADVIAK 500 (732)
Q Consensus 461 ~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p-~t~~~I~~ 500 (732)
..+-.+|...|+.++|...|++.... .+.. ..+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 141 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHH
Confidence 88889999999999999999998876 4433 34444443
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.62 E-value=0.048 Score=48.34 Aligned_cols=96 Identities=7% Similarity=-0.076 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (732)
.|..+=..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|.+.|+...+.. ..+...|..+-.+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45555667889999999999999987652 3457788888899999999999999999988764 345778889999999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 004743 469 EAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~~~ 486 (732)
..|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998775
No 135
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.61 E-value=0.028 Score=50.69 Aligned_cols=89 Identities=15% Similarity=0.064 Sum_probs=45.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004743 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (732)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~ 438 (732)
-..+.+.|++++|...|++..... +.+...|..+-.+|...|++++|...|+...... +-+...|..+-.+|...|++
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 344455556666666665555432 2244555555555555566666655555554432 11233444444455555555
Q ss_pred HHHHHHHHHHH
Q 004743 439 DKACSVEEHML 449 (732)
Q Consensus 439 ~~A~~l~~~M~ 449 (732)
++|.+.|+...
T Consensus 103 ~~A~~~~~~al 113 (142)
T 2xcb_A 103 DGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.59 E-value=0.07 Score=48.38 Aligned_cols=97 Identities=10% Similarity=-0.025 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (732)
..|..+-..+...|++++|...|++..... +.+...|..+-..+...|++++|.+.++...+.. ..+...|..+-.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 457777888899999999999999987752 2357788888889999999999999999988764 34577888888999
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 004743 468 VEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M~~~ 486 (732)
...|+.++|...|++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 9999999999999998876
No 137
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.59 E-value=0.038 Score=48.70 Aligned_cols=98 Identities=11% Similarity=0.033 Sum_probs=82.1
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~ 430 (732)
...|.. +-..+.+.|++++|...|++..... +.+...|..+-.+|...|++++|...+++..+.. +-+...|..+-.
T Consensus 9 ~~~~~~-~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKE-QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 444555 6778889999999999999988764 3467899999999999999999999999988763 235678888889
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 004743 431 VFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~ 451 (732)
.|...|++++|...|+...+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999987653
No 138
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.58 E-value=0.012 Score=52.98 Aligned_cols=131 Identities=14% Similarity=-0.009 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-Chh
Q 004743 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLR 423 (732)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~ 423 (732)
+.. +-..|...|++++|.+.+++.....- .++ ..++..+-..+...|++++|.+.+++.... +-.+ ...
T Consensus 12 ~~~-l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 12 FGN-LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 444 66778889999999999988765311 112 247888889999999999999999987643 1111 145
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 424 SYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.+..+-..+...|+.++|.+.+++..+. +-.+ ....+..+-..|...|+.++|...+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6777788889999999999999887643 2111 134677788888999999999999987654
No 139
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.57 E-value=0.025 Score=58.00 Aligned_cols=128 Identities=10% Similarity=0.019 Sum_probs=97.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDE-VPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PR----LRSYGP 427 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~----~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~-pd----~~ty~~ 427 (732)
.+..+...|++++|.+++++..... ..|+. ..|..+...+...|++++|...|++....... ++ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677889999999999999988742 22332 23445666677788999999999998874322 23 236888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 428 ALSVFCNNGDVDKACSVEEHMLE----H-GVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~----~-gv~pd~-~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
+-..|...|+.++|.+.|+...+ . +..+.. .+|..+-..|.+.|++++|...+++..+
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999874 1 222333 3778888999999999999999987654
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.57 E-value=0.029 Score=51.34 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=37.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~ 439 (732)
..+.+.|++++|...|++..... +.+...|..+-.+|...|++++|...|++..... +-+...|..+-.+|...|+.+
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 106 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGELA 106 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHH
Confidence 34444455555555554444332 2234444444444444555555555554444321 112233333444444444444
Q ss_pred HHHHHHHHH
Q 004743 440 KACSVEEHM 448 (732)
Q Consensus 440 ~A~~l~~~M 448 (732)
+|.+.|+..
T Consensus 107 ~A~~~~~~a 115 (148)
T 2vgx_A 107 EAESGLFLA 115 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 141
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.53 E-value=0.053 Score=50.74 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHM 448 (732)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (732)
+|...|++..+.. +-+...+..+-..+...|++++|...|++..+..-.+ +...+..+...|...|+.++|...|++.
T Consensus 92 ~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 92 PELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4677777766543 2357888888899999999999999999887653222 2457888888899999999999888876
Q ss_pred H
Q 004743 449 L 449 (732)
Q Consensus 449 ~ 449 (732)
.
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 5
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.52 E-value=0.021 Score=53.36 Aligned_cols=123 Identities=7% Similarity=-0.003 Sum_probs=92.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|.+..+.. |+ +...|.. +-..|...|++++|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~-------------------------------~~~~~~~-lg~~~~~~~~~~~A~~ 65 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQ-------------------------------NSEQWAL-LGEYYLWQNDYSNSLL 65 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CS-------------------------------CHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC--CC-------------------------------cHHHHHH-HHHHHHHcCCHHHHHH
Confidence 667788888988888766542 22 2223334 6778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRM-AMSMGDG--DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~-~~~~g~~--~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
.|++..... +.+...|..+... +...|++ ++|...+++..+.. +-+...|..+-..|...|+.++|...|+...+
T Consensus 66 ~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 66 AYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 999988754 3467788888888 7789998 99999999988763 23466777888899999999999999999887
Q ss_pred CC
Q 004743 451 HG 452 (732)
Q Consensus 451 ~g 452 (732)
..
T Consensus 144 ~~ 145 (177)
T 2e2e_A 144 LN 145 (177)
T ss_dssp TC
T ss_pred hC
Confidence 63
No 143
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.041 Score=48.04 Aligned_cols=96 Identities=11% Similarity=0.009 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (732)
.|..+-..+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|...++...+.. .-+...|..+-.+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444445555566666666665554431 1234455555555556666666666666555442 123445555555666
Q ss_pred hcCChHHHHHHHHHHHhc
Q 004743 469 EAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~~~ 486 (732)
..|+.++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666655443
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.45 E-value=0.038 Score=50.93 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (732)
..|..+-..+...|++++|...|++..+.. .-+...|..+-.+|.+.|++++|...|+...+.. .-+...|..+-.+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344555555555666666666665554431 1234455555555666666666666666655443 22355555666666
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 004743 468 VEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M~~~ 486 (732)
.+.|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6666666666666665544
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.39 E-value=0.039 Score=50.44 Aligned_cols=99 Identities=11% Similarity=-0.087 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004743 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (732)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (732)
+...+..+-..+...|++++|...|+...... +.+...|..+-.+|...|++++|...|+...+.. .-+...|..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34567777888999999999999999987652 2356777778888999999999999999998764 234577788888
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 004743 466 VSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 466 ~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+|...|+.++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988765
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.049 Score=47.51 Aligned_cols=92 Identities=10% Similarity=0.010 Sum_probs=78.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+-..+.+.|++++|.+.|++..... +.+...|..+-.+|.+.|++++|...+++..+.. +-+...|..+-.+|...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhC
Confidence 5567889999999999999988754 4468899999999999999999999999988763 2346778888889999999
Q ss_pred hHHHHHHHHHHHHC
Q 004743 438 VDKACSVEEHMLEH 451 (732)
Q Consensus 438 ~~~A~~l~~~M~~~ 451 (732)
.++|.+.|++..+.
T Consensus 88 ~~~A~~~~~~al~~ 101 (126)
T 3upv_A 88 YASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988754
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.38 E-value=0.043 Score=49.41 Aligned_cols=97 Identities=14% Similarity=-0.045 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (732)
..+..+-..+...|++++|...|++..... +.+...|..+-.+|.+.|++++|...|+...... .-+...|..+-.+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 455566778889999999999999988752 2356677778888999999999999999998764 33456677888899
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 004743 468 VEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M~~~ 486 (732)
...|++++|...|++....
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988765
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.35 E-value=0.043 Score=50.58 Aligned_cols=97 Identities=10% Similarity=0.082 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~ 431 (732)
..|.. +-..|.+.|++++|.+.|++..... +-+...|..+-.+|...|++++|...|++..+.. .-+...|..+-..
T Consensus 12 ~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKS-EGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34445 6678889999999999999988754 3478899999999999999999999999988763 2347788888999
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 004743 432 FCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~ 451 (732)
|...|++++|.+.|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.34 E-value=0.059 Score=51.35 Aligned_cols=118 Identities=8% Similarity=-0.110 Sum_probs=73.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCC-CC---C-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PM---N-----------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi-~p---d-----------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 422 (732)
+-..+.+.|++++|.+.|++.....- .| . ...|..+-.+|...|++++|...++...... +.+.
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~ 122 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNV 122 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccH
Confidence 44566778888888888888776321 11 1 2567777777777888888887777766552 2345
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004743 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (732)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~ 477 (732)
..|..+-.+|...|++++|.+.|+...+.. .-+...+..+-.++...++.+++.
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777777777777766542 123444555555555444444443
No 150
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.24 E-value=0.14 Score=49.60 Aligned_cols=115 Identities=8% Similarity=-0.043 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHh----cCC
Q 004743 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGIN-PRLRSYGPALSVFCN----NGD 437 (732)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~g~~-pd~~ty~~lI~~~~~----~g~ 437 (732)
+.++|.+.|++..+.| +...+..|-..|.. .++.++|.+.|++..+.|.. -+...+..|=..|.. .++
T Consensus 68 ~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 6667777777666655 45556666666655 66777777777765554421 014455555555655 567
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhc
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-G-----KGDRVYYLLHKLRTS 486 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~-g-----~~~~A~~l~~~M~~~ 486 (732)
.++|.+.|+...+.+ .+...+..|-..|... | +.++|...|++-.+.
T Consensus 145 ~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 145 DVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 777777777766651 2333444444445432 2 677777777776665
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.19 E-value=0.044 Score=56.21 Aligned_cols=129 Identities=11% Similarity=-0.097 Sum_probs=96.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhc
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNN 435 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~lI~~~~~~ 435 (732)
....+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|...|+...... .|. ...+..+=.++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 5567888999999999999988754 655455556668889999999999997443221 111 22455566678899
Q ss_pred CChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC
Q 004743 436 GDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS 491 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~ 491 (732)
|++++|+..|++.......|. ......+-.++.+.|+.++|..+|+++... .|.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 999999999999885443365 224455556678999999999999999987 555
No 152
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.18 E-value=0.015 Score=67.84 Aligned_cols=172 Identities=8% Similarity=-0.074 Sum_probs=124.6
Q ss_pred CCCChhhHHHHhhhccccchhhc--------ccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc
Q 004743 248 KSGSGMRTLDTFEVSTMNSTELG--------DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (732)
Q Consensus 248 k~g~~~~A~~~~~~~~~~s~em~--------~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~ 319 (732)
..|+.++|++.+. +.. .. .-.+...|..+-.. +.+.|++++|...|++..+.. |+
T Consensus 403 ~~~~~~~A~~~~~-------~al~~~~~~~~~~-~p~~~~~~~~~a~~------~~~~g~~~~A~~~~~~al~~~--p~- 465 (681)
T 2pzi_A 403 VLSQPVQTLDSLR-------AARHGALDADGVD-FSESVELPLMEVRA------LLDLGDVAKATRKLDDLAERV--GW- 465 (681)
T ss_dssp TTCCHHHHHHHHH-------HHHTC-------C-CTTCSHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHH--CC-
T ss_pred cccCHHHHHHHHH-------Hhhhhcccccccc-cccchhHHHHHHHH------HHhcCCHHHHHHHHHHHhccC--cc-
Confidence 5688899999885 332 11 11144446666666 889999999999999887642 22
Q ss_pred cccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004743 320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399 (732)
Q Consensus 320 ~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~ 399 (732)
+...|+. +=..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+
T Consensus 466 ------------------------------~~~a~~~-lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 466 ------------------------------RWRLVWY-RAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAEL 513 (681)
T ss_dssp ------------------------------CHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred ------------------------------hHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 2223334 5567889999999999999988754 2356788999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 004743 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGK 472 (732)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~ 472 (732)
.|++++ .+.|++..+.. .-+...|..+-.+|.+.|+.++|.+.|++..+. .|+ ...|..+..++...|.
T Consensus 514 ~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred cCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999999 99999887652 224667888889999999999999999987654 466 4556666666655554
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.16 E-value=0.093 Score=46.40 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=28.7
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~ 414 (732)
..+.+.|++++|++.|++..+.. +-+...|+.+-.+|...|++++|.+.+++..
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 44555556666666665554432 2234555555555555555555555555544
No 154
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.16 E-value=0.27 Score=47.61 Aligned_cols=122 Identities=10% Similarity=0.011 Sum_probs=97.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----DGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g----~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~ 433 (732)
|=..|...+++++|++.|++..+.| +...+..|-..|.. + +.++|.+.|++..+.| +...+..|=..|.
T Consensus 24 lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~ 96 (212)
T 3rjv_A 24 LADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLV 96 (212)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 5566777899999999999999887 56777777777777 6 8999999999988775 4555666666666
Q ss_pred h----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 004743 434 N----NGDVDKACSVEEHMLEHGVY-PEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~----~g~~~~A~~l~~~M~~~gv~-pd~~ty~~Li~~~~~----~g~~~~A~~l~~~M~~~ 486 (732)
. .++.++|.+.|+...+.|-. -+...+..|=..|.. .++.++|...|++-.+.
T Consensus 97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 6 78999999999999877621 026677777777777 78899999999998775
No 155
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.15 E-value=0.07 Score=58.65 Aligned_cols=122 Identities=13% Similarity=0.050 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHhcc---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCChhhH
Q 004743 353 DADEIRLSEDAKKY---AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----GDGDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 353 tyn~~lI~~~~k~g---~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~----g~~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
.+.. |-..|.+.| +.++|++.|++..+.| .++...+..|-..|... ++.++|.+.|+... .| +...+
T Consensus 178 a~~~-Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~ 251 (452)
T 3e4b_A 178 CYVE-LATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASW 251 (452)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHH
T ss_pred HHHH-HHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHH
Confidence 4444 556677788 8899999999988887 44555555566666544 68899999998876 33 33333
Q ss_pred HHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHH
Q 004743 426 GPALSV-F--CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG-----KGDRVYYLLHKLR 484 (732)
Q Consensus 426 ~~lI~~-~--~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g-----~~~~A~~l~~~M~ 484 (732)
..|=.. | ...++.++|.+.|+...+.| +...+..|-..|. .| +.++|...|++-.
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 333333 2 45789999999999988877 5566666666665 55 8889999888765
No 156
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.14 E-value=0.15 Score=44.23 Aligned_cols=89 Identities=16% Similarity=0.047 Sum_probs=52.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALLR 465 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd----~~ty~~Li~ 465 (732)
-..+...|++++|...|+...+.. |+. ..+..+-..+.+.|++++|...|+...+.. |+ ...+..+-.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 344555666666666666655432 222 244445556666666677766666665542 32 344555666
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 004743 466 VSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 466 ~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+|.+.|+.++|...|++....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666777777777777776655
No 157
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.12 E-value=0.54 Score=48.75 Aligned_cols=232 Identities=9% Similarity=-0.031 Sum_probs=152.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcccCCcccCCCC--ChhhHHHHhhhccccchhhcccCCCCCccc
Q 004743 204 RGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSG--SGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (732)
Q Consensus 204 ~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~~~~~~~~~~~k~g--~~~~A~~~~~~~~~~s~em~~~~g~~d~~t 280 (732)
...-++|+++++.+.... |+ ...|+.-=..+. ..| .+++++..++ .+... ...+-..
T Consensus 46 ~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~----------~l~~~~~~eeL~~~~-------~~L~~-nPk~y~a 105 (306)
T 3dra_A 46 EEYSERALHITELGINEL--ASHYTIWIYRFNILK----------NLPNRNLYDELDWCE-------EIALD-NEKNYQI 105 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----------TCTTSCHHHHHHHHH-------HHHHH-CTTCCHH
T ss_pred CCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHH----------HcccccHHHHHHHHH-------HHHHH-CcccHHH
Confidence 344468999999998653 44 344555444454 445 8889998885 33322 2223333
Q ss_pred cccccccccccccc----ccc---CChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhh
Q 004743 281 LDYGSSPMIDKLES----NSS---YRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (732)
Q Consensus 281 yn~LI~~~~~~~~~----~~~---g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~t 353 (732)
|+.--.. + ... +++++++.+++.+.+.. ...| ..
T Consensus 106 W~~R~~i------L~~~~~~l~~~~~~~~EL~~~~~~l~~~----pkny-----------------------------~a 146 (306)
T 3dra_A 106 WNYRQLI------IGQIMELNNNDFDPYREFDILEAMLSSD----PKNH-----------------------------HV 146 (306)
T ss_dssp HHHHHHH------HHHHHHHTTTCCCTHHHHHHHHHHHHHC----TTCH-----------------------------HH
T ss_pred HHHHHHH------HHHHHHhccccCCHHHHHHHHHHHHHhC----CCCH-----------------------------HH
Confidence 5433222 2 222 67899999999988752 2222 12
Q ss_pred hHHHHHHHHHhccCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCChhhH
Q 004743 354 ADEIRLSEDAKKYAFQ--RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD------GDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 354 yn~~lI~~~~k~g~~~--~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~------~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
|+. ---.+.+.|.++ ++++.+++|.+.. +-|-..|+---..+...|. ++++++.+..+.... +-|...|
T Consensus 147 W~~-R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW 223 (306)
T 3dra_A 147 WSY-RKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTW 223 (306)
T ss_dssp HHH-HHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHH-HHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHH
Confidence 333 223334455666 8999999999865 4577888877777777776 889999999888763 3567888
Q ss_pred HHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH
Q 004743 426 GPALSVFCNNGDVDK-ACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~-A~~l~~~M~~~g--v~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~ 497 (732)
+-+-..+.+.|.... +.++.....+.+ -..+...+..+.+.|++.|+.++|.++++.+.+....+..+.|.-
T Consensus 224 ~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 224 NYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 888888888887444 555666655432 134778899999999999999999999999987422333334543
No 158
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.07 E-value=0.12 Score=49.93 Aligned_cols=120 Identities=9% Similarity=-0.021 Sum_probs=90.3
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTA----------------VGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~----------------LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 422 (732)
..+.+.|++++|...|++..... | +...|.. +-.+|.+.|++++|...|++..+.. +-+.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 88 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV 88 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 45668899999999999988753 4 3445666 8888999999999999999988762 2356
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHH
Q 004743 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK--GDRVYYLLHKL 483 (732)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~--~~~A~~l~~~M 483 (732)
..|..+-..|...|+.++|.+.|++..+.. .-+...|..|-..|...|. .+.+...+...
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 788888899999999999999999998764 2346677777777765554 34455555554
No 159
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.05 E-value=0.036 Score=52.42 Aligned_cols=122 Identities=12% Similarity=-0.028 Sum_probs=89.6
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCC
Q 004743 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGD 437 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~ty~~lI~~~~~~g~ 437 (732)
...|++++|.++++.+.. .......++..+-..+...|++++|...+++.... |..| ...++..+-..|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 357899999996655543 22235678899999999999999999999987652 2222 24677778888999999
Q ss_pred hHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 438 VDKACSVEEHMLEH----GVYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 438 ~~~A~~l~~~M~~~----gv~p--d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
+++|.+.+++..+. +-.| ....+..+-..+...|++++|...+++...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999887653 2121 234577788888999999999999988754
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.77 E-value=0.017 Score=50.15 Aligned_cols=86 Identities=10% Similarity=-0.015 Sum_probs=50.2
Q ss_pred ccCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 004743 365 KYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi--~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~ 442 (732)
.|++++|...|++..+.+. +-+...|..|-..|...|++++|...|++..+.. +-+...|..+-.+|...|+.++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566667777776665431 2234556666666777777777777777666542 123455555666666677777777
Q ss_pred HHHHHHHHC
Q 004743 443 SVEEHMLEH 451 (732)
Q Consensus 443 ~l~~~M~~~ 451 (732)
+.++...+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 766665543
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.76 E-value=0.13 Score=45.34 Aligned_cols=109 Identities=11% Similarity=0.103 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC----HHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPE----EPELE 461 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g--v~pd----~~ty~ 461 (732)
.++.-|=..+.+.|++++|.+.|++..+.. +-+...|+.+=.+|.+.|++++|.+.++...+.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 455666678889999999999999987652 2346778888889999999999999999887532 1222 23677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHH
Q 004743 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499 (732)
Q Consensus 462 ~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~I~ 499 (732)
.+=.++...|++++|.+.|++-... .+.|++...|.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l~ 123 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHHH
Confidence 7778899999999999999988776 67777655444
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.56 Score=50.09 Aligned_cols=209 Identities=8% Similarity=-0.021 Sum_probs=126.0
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCC-CCC---------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKK-DRS---------EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQY 227 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~-~~p---------~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~-Gi~pd~~ 227 (732)
.+.+.++..+|.+.|....+........ ... -...+..+...|.+.|++++|.+++..+... +-.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 3457789999999999987643322110 000 0134778899999999999999999887632 1112222
Q ss_pred HHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHH
Q 004743 228 HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTF 307 (732)
Q Consensus 228 tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf 307 (732)
+-..+...+. .+ +...|..+.|..++
T Consensus 93 ~~~~~~~~l~--------------------~~----------------------------------~~~~~~~~~a~~~~ 118 (434)
T 4b4t_Q 93 TVKVLKTLIE--------------------KF----------------------------------EQVPDSLDDQIFVC 118 (434)
T ss_dssp HHHHHHHHHH--------------------HH----------------------------------CSCCSCHHHHHHHH
T ss_pred HHHHHHHHHH--------------------HH----------------------------------HhCCCCHHHHHHHH
Confidence 2111111111 00 22334455555555
Q ss_pred HHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCCh-hhhHHHHHHHHHhccCHHHHHHHHHHHHhC--CC-
Q 004743 308 NEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EV- 383 (732)
Q Consensus 308 ~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--gi- 383 (732)
.+...... ..+-.+.. .++.. +...|...|++++|..++++.... +.
T Consensus 119 ~~~~~~~~----------------------------~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 119 EKSIEFAK----------------------------REKRVFLKHSLSIK-LATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHH----------------------------HSSCCSSHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHH----------------------------HhCccHHHHHHHHH-HHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 44332100 00000111 12233 778888999999999999887642 21
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 384 -PM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 384 -~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
.| ...+|..++..|...|++++|..+++..... +..|. ...|..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 2457888999999999999999999876532 22222 35566667777788999999888776643
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.67 E-value=0.1 Score=45.74 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=58.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g 436 (732)
+-..+.+.|++++|...|++..... +-+...|..+-.++...|+.++|...|++..+. .| +...+..+-..|...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 3345667777777777777766643 235666666777777777777777777766554 23 3445556666666777
Q ss_pred ChHHHHHHHHHHHH
Q 004743 437 DVDKACSVEEHMLE 450 (732)
Q Consensus 437 ~~~~A~~l~~~M~~ 450 (732)
+.++|...++...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766653
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.61 E-value=0.032 Score=61.95 Aligned_cols=120 Identities=11% Similarity=-0.015 Sum_probs=90.2
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~ 439 (732)
..+.+.|++++|.+.|++..+.. +-+..+|..+-.+|.+.|++++|.+.+++..+.. +-+...|..+-.+|.+.|+.+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999988753 3458899999999999999999999999988762 234678888888999999999
Q ss_pred HHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004743 440 KACSVEEHMLEHGV-YPEEPELEALLRVSVEAGKGDRVYYLLH 481 (732)
Q Consensus 440 ~A~~l~~~M~~~gv-~pd~~ty~~Li~~~~~~g~~~~A~~l~~ 481 (732)
+|.+.|++..+..- .++....-..+..+.+.|++++|.++++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999887531 2233333333334788899999999988
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.52 E-value=0.26 Score=42.56 Aligned_cols=96 Identities=9% Similarity=-0.026 Sum_probs=76.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALS 430 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~ty~~lI~ 430 (732)
+-..+.+.|++++|.+.|++.....- .+. ..+..+-.++...|++++|...|++..... |+ ...+..+-.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 44567789999999999999887531 122 477778889999999999999999988753 43 455677778
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 004743 431 VFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (732)
+|...|+.++|...|+...+.. |+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~--p~~~ 110 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY--PGSD 110 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCh
Confidence 8999999999999999988753 5543
No 166
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.51 E-value=0.067 Score=54.85 Aligned_cols=125 Identities=11% Similarity=-0.069 Sum_probs=88.4
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|.++|+.+...+ |+-+ .... +-..+.+.+++++|+.
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~--p~~~--------------------------------~~~~-~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAG--SEHL--------------------------------VAWM-KAVVYGAAERWTDVID 156 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTT--CHHH--------------------------------HHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcC--CchH--------------------------------HHHH-HHHHHHHcCCHHHHHH
Confidence 778899999999998665533 3221 1112 3347789999999999
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 374 IYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 374 lf~~M~~~gi~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~--~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
.|+...... .|. ...+..|=.++...|++++|+..|++.......|.. ......-.++.+.|+.++|..+|+++.
T Consensus 157 ~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 157 QVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 998543321 111 236777778899999999999999987744332542 234445566888999999999999998
Q ss_pred HCCCCCC
Q 004743 450 EHGVYPE 456 (732)
Q Consensus 450 ~~gv~pd 456 (732)
... |+
T Consensus 236 a~~--P~ 240 (282)
T 4f3v_A 236 TTH--PE 240 (282)
T ss_dssp HHS--CC
T ss_pred hcC--Cc
Confidence 753 55
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.50 E-value=0.073 Score=46.69 Aligned_cols=94 Identities=12% Similarity=-0.034 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (732)
+-.+-..+.+.|++++|...|++..+. .| +...|..+=.++...|+.++|...|++..+.. .-+...+..|-.+|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344556778999999999999998875 34 56777778888999999999999999988764 225677888889999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 004743 469 EAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~~~ 486 (732)
+.|+.++|...|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 168
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=95.38 E-value=0.14 Score=56.28 Aligned_cols=109 Identities=13% Similarity=0.053 Sum_probs=73.8
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-----C
Q 004743 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-A--MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG-----D 437 (732)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~-~--~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g-----~ 437 (732)
++.++|.+.|++.. .| +...+..|-.. | ...++.++|.+.|++-.+.| +...+..|=..|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 68888888888877 44 34445555544 3 35788889999998888776 4445554544554 55 8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~----~g~~~~A~~l~~~M~~~ 486 (732)
.++|.+.|+... .| +...+..|-..|.. ..+.++|...|++-.+.
T Consensus 303 ~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 303 AKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 888888888766 33 45555555555544 33788888888887766
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.35 E-value=0.029 Score=48.65 Aligned_cols=87 Identities=17% Similarity=0.044 Sum_probs=68.3
Q ss_pred hcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004743 399 SMGDGDMAFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g--~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (732)
..|++++|...|++..+.+ -+-+...|..+-..|...|++++|.+.|++..+.. .-+...|..+-.+|.+.|+.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999988764 12235678888889999999999999999998764 23467788888999999999999
Q ss_pred HHHHHHHHhc
Q 004743 477 YYLLHKLRTS 486 (732)
Q Consensus 477 ~~l~~~M~~~ 486 (732)
...|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.87 Score=48.53 Aligned_cols=123 Identities=7% Similarity=0.003 Sum_probs=90.3
Q ss_pred HhccCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC--CCC-hhhHHHHHHHH
Q 004743 363 AKKYAFQRGFEIYEKMCL----DEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GI--NPR-LRSYGPALSVF 432 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~----~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--g~--~pd-~~ty~~lI~~~ 432 (732)
...|..+.|.+++.+... .+..+. ..++..|...|...|++++|..++.+.... +. .|. ..+|..++..|
T Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (434)
T 4b4t_Q 106 QVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVY 185 (434)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 345788888888877653 333343 457888999999999999999999987654 11 122 45788899999
Q ss_pred HhcCChHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 433 CNNGDVDKACSVEEHMLEH--GVY-P-E--EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~--gv~-p-d--~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
...|++++|..+++..... .+. | . ...|..+...+...|++++|...|.+..+
T Consensus 186 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 186 HKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999876532 121 2 1 24566667777889999999988877643
No 171
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.22 E-value=0.058 Score=60.07 Aligned_cols=126 Identities=11% Similarity=0.052 Sum_probs=89.7
Q ss_pred HHHhccCHHHHHHHHHHHHhC---CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhhHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLD---EVP---MN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LRSYG 426 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~---gi~---pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd-~~ty~ 426 (732)
.+-..|++++|..++++..+. -+. |+ ..+++.|...|...|++++|..++++.... | -.|+ ..+|+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355778999999998876642 112 22 357899999999999999999998876533 2 2233 46788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 427 PALSVFCNNGDVDKACSVEEHMLE-----HGV-YPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~-----~gv-~pd~~-ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|=..|...|++++|..++++..+ .|- .|+.. +.+.|-.++...++.++|..++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999887653 232 13332 3345555666778888999999888764
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.12 E-value=0.26 Score=50.15 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHH
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALS 430 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~ 430 (732)
..+.. +-..+.+.|++++|...|++..... +-+...|..+-.+|.+.|++++|...+++..+. .| +...|..+-.
T Consensus 5 ~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 5 QELKE-QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred HHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34444 5567778888888888888777653 236777888888888888888888888776654 33 3566777777
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 004743 431 VFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~ 450 (732)
+|...|++++|...|+...+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 78888888888888877654
No 173
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.04 E-value=0.35 Score=50.63 Aligned_cols=97 Identities=13% Similarity=-0.025 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----------------LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd----------------~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
...|..+-..|.+.|++++|...|++..... |+ ...|..+-.+|.+.|++++|...++...+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567778888999999999999999987653 44 47888899999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.. ..+...|..+-.+|...|++++|...|++..+.
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 64 346788899999999999999999999998876
No 174
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.01 E-value=0.57 Score=44.29 Aligned_cols=99 Identities=14% Similarity=0.013 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPR--------------LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~-~pd--------------~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
...+..+-..+...|++++|...|.+.....- .|+ ...|..+-.+|.+.|++++|...++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566677788899999999999999876421 121 267777888899999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 452 gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
. ..+...|..+-.+|...|++++|...|++....
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3 346778888889999999999999999998766
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.99 E-value=0.22 Score=54.81 Aligned_cols=127 Identities=10% Similarity=-0.009 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--------------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (732)
.|.. +-..|.+.|++++|...|++.....-.-. ...|..+-.+|.+.|++++|...+++..+..
T Consensus 270 ~~~~-~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 270 IVKE-KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHH-HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 3444 55778889999999999998876421111 5788888889999999999999998887653
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHH-HHHHH
Q 004743 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYY-LLHKL 483 (732)
Q Consensus 419 ~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~-l~~~M 483 (732)
+-+...|..+-.+|...|++++|...|+...+. .| +...|..+-.++.+.|+.+++.. ++..|
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235677777888888999999999999888764 34 34466667777777777776553 34444
No 176
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=94.72 E-value=1.7 Score=44.88 Aligned_cols=225 Identities=8% Similarity=0.014 Sum_probs=147.5
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG--DVMGAIRLYDKAQREGIKLGQYHYNVLLYLC--- 236 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g--~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~--- 236 (732)
+....++|+++++.+... .|+ +...||.-=..+...| ++++++++++.+....-+ +...|+.--..+
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~-----~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LAS-----HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQI 116 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTT-----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH--CcH-----HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHH
Confidence 444556899999988553 122 2356777767777778 999999999999976422 334454433333
Q ss_pred -HhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChh--HHHHHHHHHHHc
Q 004743 237 -SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--DLDSTFNEKENL 313 (732)
Q Consensus 237 -~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~--~A~~lf~eM~~~ 313 (732)
...+ ..++.++++..++ .+.+. .-.|-..|+.---. +.+.|.++ +++..++.|.+.
T Consensus 117 ~~~l~-------~~~~~~~EL~~~~-------~~l~~-~pkny~aW~~R~~v------l~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 117 MELNN-------NDFDPYREFDILE-------AMLSS-DPKNHHVWSYRKWL------VDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp HHHTT-------TCCCTHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHhcc-------ccCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhcccChHHHHHHHHHHHHh
Confidence 3111 2267888888885 44433 33355556555545 55667777 999999999876
Q ss_pred CCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccC------HHHHHHHHHHHHhCCCCCCH
Q 004743 314 GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYA------FQRGFEIYEKMCLDEVPMNE 387 (732)
Q Consensus 314 gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~------~~~A~~lf~~M~~~gi~pd~ 387 (732)
... |-.. |+. --..+.+.+. ++++++.++++.... +-|.
T Consensus 176 d~~-N~sA--------------------------------W~~-R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~ 220 (306)
T 3dra_A 176 DLK-NNSA--------------------------------WSH-RFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNP 220 (306)
T ss_dssp CTT-CHHH--------------------------------HHH-HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCH
T ss_pred CCC-CHHH--------------------------------HHH-HHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCc
Confidence 321 1122 222 1111222232 788999999888764 4588
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDM-AFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~-A~~l~~~M~~~g--~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
..|+-+-..+.+.|+..+ +..+..+....+ -..+...+..+...|++.|+.++|.++++.+.+
T Consensus 221 SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 221 STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999888988888554 445665554432 124567788899999999999999999999875
No 177
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.69 E-value=0.31 Score=49.52 Aligned_cols=98 Identities=14% Similarity=-0.003 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004743 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (732)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (732)
+...+..+-..+...|++++|...|++..+. .| +...|..+-..|.+.|++++|.+.++...+.. .-+...|..+-
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567788888899999999999999988765 34 67788888889999999999999999887653 23567788888
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 004743 465 RVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 465 ~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+|...|++++|...|++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8999999999999999887654
No 178
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.57 E-value=0.26 Score=57.15 Aligned_cols=136 Identities=8% Similarity=-0.040 Sum_probs=99.6
Q ss_pred CChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHH
Q 004743 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV---------PMN------------EASLTAVGRMAMSMGDGDMAF 407 (732)
Q Consensus 349 pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi---------~pd------------~~ty~~LI~~~~~~g~~~~A~ 407 (732)
|+........+...-+.|++++|.++|+.+..... .|+ ..+|...++..-+.|..+.|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 44443333367777888999999999999886420 142 346888888888899999999
Q ss_pred HHHHHHHHc-C-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 408 DMVKRMKSL-G-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 408 ~l~~~M~~~-g-~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.+|....+. + ..+.+....+.|...+ .++.+.|..+|+...+. ..-+...|...++.....|+.+.|..+|++...
T Consensus 455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999998876 2 3344444444444222 35699999999998876 333556667888888889999999999999887
Q ss_pred c
Q 004743 486 S 486 (732)
Q Consensus 486 ~ 486 (732)
.
T Consensus 533 ~ 533 (679)
T 4e6h_A 533 K 533 (679)
T ss_dssp T
T ss_pred h
Confidence 6
No 179
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.51 E-value=0.57 Score=41.96 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=89.2
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChH
Q 004743 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVD 439 (732)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~----~g~~~ 439 (732)
-.+++++|++.|++..+.| .|+.. |-..|...+.+++|++.|++-.+.| +...+..|=..|.. .++.+
T Consensus 7 ~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 3457889999999999988 34443 5566667788899999999988875 45566666666777 78999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 004743 440 KACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~----~g~~~~A~~l~~~M~~~ 486 (732)
+|.+.|+...+.| +...+..|=..|.. .++.++|...|++-.+.
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999999999886 56677777777777 78999999999988776
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.46 E-value=0.29 Score=52.25 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=50.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLD---------------EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-R 421 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~---------------gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d 421 (732)
+-..|.+.|++++|.+.|++..+. --+-+..+|..+-.+|.+.|++++|.+.+++..+. .| +
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~ 306 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSN 306 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cchh
Confidence 446677778888888877766541 00112345555555555566666666555555443 22 2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 422 LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
...|..+-.+|...|+.++|.+.|++..+
T Consensus 307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34444455555555555555555555544
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=94.25 E-value=0.18 Score=55.85 Aligned_cols=116 Identities=7% Similarity=0.002 Sum_probs=87.0
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+.+.|++++|...|++..+. .|+ +...|+. +-..|.+.|++++|.+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~-------------------------------~~~~~~~-lg~~~~~~g~~~~A~~ 61 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPS-------------------------------NAIYYGN-RSLAYLRTECYGYALG 61 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTT-------------------------------CHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCc-------------------------------cHHHHHH-HHHHHHHhcCHHHHHH
Confidence 88899999999999987765 232 2234445 7788999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHH--HHhcCChHHHHHHHH
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSV--FCNNGDVDKACSVEE 446 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~--~~~~g~~~~A~~l~~ 446 (732)
.+++..+.. +-+..+|..+-.+|...|++++|.+.|++..+.. |+ ...+..+-.+ +.+.|++++|.++++
T Consensus 62 ~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 62 DATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999998864 3467889999999999999999999999987652 33 3344444444 788899999999988
No 182
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=94.07 E-value=2.8 Score=44.07 Aligned_cols=233 Identities=9% Similarity=-0.065 Sum_probs=140.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcccCCcccCCCC-ChhhHHHHhhhccccchhhcccCCCCCcccc
Q 004743 204 RGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (732)
Q Consensus 204 ~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~~~~~~~~~~~k~g-~~~~A~~~~~~~~~~s~em~~~~g~~d~~ty 281 (732)
.+.-++|+++++.+.... |+ ...|+.-=..+. ..| .+++++..++ .+... ..++-..|
T Consensus 67 ~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~----------~l~~~l~eEL~~~~-------~~L~~-nPKny~aW 126 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN--PAHYTVWQYRFSLLT----------SLNKSLEDELRLMN-------EFAVQ-NLKSYQVW 126 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHHHT-TCCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHH----------HhhhhHHHHHHHHH-------HHHHh-CCCcHHHH
Confidence 344567899999988653 33 344555444444 345 4788888885 33332 22244445
Q ss_pred cccccccccccccccc-C-ChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhH--HH
Q 004743 282 DYGSSPMIDKLESNSS-Y-RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD--EI 357 (732)
Q Consensus 282 n~LI~~~~~~~~~~~~-g-~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn--~~ 357 (732)
+.--.. +.+. + +.++++.+++.+.+.. ...|. .|+ ..
T Consensus 127 ~hR~wl------L~~l~~~~~~~EL~~~~k~L~~d----pkNy~-----------------------------AW~~R~w 167 (349)
T 3q7a_A 127 HHRLLL------LDRISPQDPVSEIEYIHGSLLPD----PKNYH-----------------------------TWAYLHW 167 (349)
T ss_dssp HHHHHH------HHHHCCSCCHHHHHHHHHHTSSC----TTCHH-----------------------------HHHHHHH
T ss_pred HHHHHH------HHHhcCCChHHHHHHHHHHHHhC----CCCHH-----------------------------HHHHHHH
Confidence 544333 3333 4 6788888888886542 22221 121 11
Q ss_pred HHHHHHhcc-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCChhhH
Q 004743 358 RLSEDAKKY-----AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD-------GDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 358 lI~~~~k~g-----~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~-------~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
++..+.+.. .+.++++.++++.+.. +-|...|+-.-..+.+.+. ++++++.+.+..... .-|...|
T Consensus 168 vl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW 245 (349)
T 3q7a_A 168 LYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAW 245 (349)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 333222221 1348999999998865 4588889888888888776 688888888877652 3456777
Q ss_pred HHHHHHHHhcCCh--------------------HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004743 426 GPALSVFCNNGDV--------------------DKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLL 480 (732)
Q Consensus 426 ~~lI~~~~~~g~~--------------------~~A~~l~~~M~~~g-----v~pd~~ty~~Li~~~~~~g~~~~A~~l~ 480 (732)
+-+-..+.+.|.. ....++..++...+ -.+....+..|.+.|...|+.++|.+++
T Consensus 246 ~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~ 325 (349)
T 3q7a_A 246 NYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVF 325 (349)
T ss_dssp HHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7766666666653 23333333333221 1467888899999999999999999999
Q ss_pred HHHHhccCCCChhHHHH
Q 004743 481 HKLRTSVRKVSPSTADV 497 (732)
Q Consensus 481 ~~M~~~~~~~~p~t~~~ 497 (732)
+.+.+....+..+-|+-
T Consensus 326 ~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 326 EKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp HHHHHTTCGGGHHHHHH
T ss_pred HHHHhhhChHHHHHHHH
Confidence 99986633333334443
No 183
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.95 E-value=0.28 Score=41.80 Aligned_cols=77 Identities=16% Similarity=-0.005 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 371 A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
|.+.|++..+.. +.+...|..+-..|...|++++|...|++..... +.+...|..+-..|...|+.++|...|+...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555554432 2345666666666667777777777776665542 1224455555556666666666666665554
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=93.74 E-value=0.43 Score=43.49 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=18.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCL 380 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~ 380 (732)
.=..+.+.|++++|.+.|.+...
T Consensus 17 ~G~~~~~~~~~~~A~~~y~~al~ 39 (162)
T 3rkv_A 17 KGNELFVQKDYKEAIDAYRDALT 39 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44667788999999998887664
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=93.46 E-value=0.31 Score=43.15 Aligned_cols=99 Identities=10% Similarity=-0.026 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EE 457 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~-pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~p-d~ 457 (732)
.++..+-..|...|++++|...+++.....-. ++ ..++..+-..|...|++++|.+.+++..+. +-.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46778888899999999999999887654111 11 247778888899999999999999887643 1111 14
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..+..+-..+...|++++|...+++....
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46777788889999999999999886543
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=93.46 E-value=1.9 Score=38.93 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CC---------CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSL-------GI---------NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-------g~---------~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
..+...-..+.+.|++++|...|.+.... .- .| +...|..+-.+|.+.|++++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34556667788999999999999887654 00 12 235778888899999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.. ..+...|..+-.+|...|++++|...|++....
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 64 345778889999999999999999999998776
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=93.42 E-value=0.18 Score=52.91 Aligned_cols=124 Identities=9% Similarity=-0.016 Sum_probs=64.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA------------------SLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~------------------ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~ 419 (732)
+-..+.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|...+++..+.. .
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 261 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-E 261 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 556677889999999999987654 34433 67777777778888888888887766542 2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH-HHhcCChHHHHHHHHHHHhc
Q 004743 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRV-SVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 420 pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~-~~~~g~~~~A~~l~~~M~~~ 486 (732)
-+...|..+-.+|...|++++|...|+...+. .|+.. .+..|-.. ....+..+++..+|..|...
T Consensus 262 ~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 262 KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 24566777777777888888888877776533 34332 22333222 12344556666666666543
No 188
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.25 E-value=0.87 Score=36.21 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
.|..+-..+...|++++|...+++..+.. +.+...|..+-..|.+.|++++|.+.+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444445555555555555555544331 11233444444455555555555555555443
No 189
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.04 E-value=1.3 Score=48.97 Aligned_cols=175 Identities=9% Similarity=0.026 Sum_probs=96.5
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhcc---------CCCC--C-hhhhHHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK---------DWSI--D-NQDADEIRLSE 361 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~---------g~~p--d-~~tyn~~lI~~ 361 (732)
+.+.|+++.|..+|++-... |+....- .. -+...+...++..+..+ +..+ + ...|-. .+..
T Consensus 223 ~~~~~~~~~ar~i~erAi~~---P~~~~l~--~~-y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~-y~~~ 295 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM---SDGMFLS--LY-YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN-HLNY 295 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CCSSHHH--HH-HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH-HHHH
T ss_pred HHHcCCHHHHHHHHHHHHhC---CCcHHHH--HH-HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH-HHHH
Confidence 56778999999999998887 6554332 10 00000000111111110 0001 0 122333 4455
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCh
Q 004743 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDV 438 (732)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~--~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~ 438 (732)
+-+.+.++.|..+|+.....+ .+...|. +.+...+ .++.+.|..+|+...+.- |+ ...+...++...+.|+.
T Consensus 296 ~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCH
Confidence 555667888888888772222 2333343 3333322 235788888887766542 33 22344556666677888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
+.|..+|+... -....|...++.=...|+.+.+..+++++..
T Consensus 371 ~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888762 2466677777766777887777777776654
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.39 Score=40.01 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
..|..+-..+...|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|.+.++...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444455555555555555555544431 12334444444555555555555555555543
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=92.52 E-value=0.64 Score=39.48 Aligned_cols=80 Identities=9% Similarity=-0.035 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 405 ~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
+|...|++..+.. +-+...|..+-..|...|++++|...|+...+.. ..+...|..+-.+|...|+.++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777766542 2356778888889999999999999999998764 3356788888899999999999999999876
Q ss_pred hc
Q 004743 485 TS 486 (732)
Q Consensus 485 ~~ 486 (732)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=92.51 E-value=0.38 Score=53.43 Aligned_cols=99 Identities=9% Similarity=-0.014 Sum_probs=74.6
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCL-----DEV-PMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GI- 418 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-----~gi-~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g~- 418 (732)
.++++ |...|...|++++|..++++... .|- -|+ ..+|+.|-..|...|++++|..++++-.+. |-
T Consensus 352 ~~~~n-La~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 352 RLLSI-ASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45667 88999999999999999988663 232 243 367999999999999999999999876532 31
Q ss_pred CCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 419 NPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 419 ~pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
.|++ .+.+.+-.++...+..++|..+|..+.+.
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2332 34555666777788999999999988753
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=92.35 E-value=0.47 Score=39.49 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=54.9
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd 421 (732)
...|.. +-..+.+.|++++|.+.|++..... +.+...|..+-.+|...|++++|.+.+++..+. .|+
T Consensus 4 ~~~~~~-~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 70 (111)
T 2l6j_A 4 FEKQKE-QGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TST 70 (111)
T ss_dssp HHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSS
T ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC
Confidence 334555 6678889999999999999988753 346788999999999999999999999998754 455
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=92.17 E-value=1.8 Score=47.21 Aligned_cols=97 Identities=12% Similarity=-0.011 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----------------LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd----------------~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
...|..+-..|.+.|++++|...|++..+. .|+ ...|..+-.+|.+.|++++|...++..++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 346777788899999999999999988764 233 47888888999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.. .-+...|..+-.+|...|++++|...|++..+.
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 64 346778888999999999999999999998765
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=92.14 E-value=1.7 Score=46.19 Aligned_cols=97 Identities=14% Similarity=0.031 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL--------------GINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~--------------g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv 453 (732)
.|..+-..+.+.|++++|.+.|++..+. ...| +...|..+-.+|.+.|++++|.+.+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 4666777889999999999999987751 0222 35678888889999999999999999998753
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.-+...|..+-.+|...|++++|...|++..+.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 235778888889999999999999999998776
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=91.95 E-value=1.4 Score=34.99 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSV 431 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~ 431 (732)
.|.. +-..+.+.|++++|...|++..... +.+..+|..+-..+...|++++|...+++..+.. |+ ...+..+-..
T Consensus 11 ~~~~-la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~ 86 (91)
T 1na3_A 11 AWYN-LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 4444 6677889999999999999988753 3467889999999999999999999999987652 43 3444444333
Q ss_pred H
Q 004743 432 F 432 (732)
Q Consensus 432 ~ 432 (732)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 197
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=91.25 E-value=14 Score=38.70 Aligned_cols=225 Identities=11% Similarity=-0.005 Sum_probs=137.3
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG-DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g-~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
+.+.....+|+++++.+.... |+ +..+||.-=..+...| ++++++++++.+....- -+...|+.--..+.
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~-----~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~- 134 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PA-----HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLD- 134 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH-
T ss_pred HHhCCCCHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH-
Confidence 344556678999999986542 21 2356777666666677 59999999999997643 35667776655555
Q ss_pred cccCCcccCCC-C-ChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChh--------HHHHHHH
Q 004743 239 AAVGVVKPAKS-G-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--------DLDSTFN 308 (732)
Q Consensus 239 ~~~~~~~~~k~-g-~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~--------~A~~lf~ 308 (732)
+. + +.++++..++ .+.+. ...|-..|+--.-. +.+.|.++ ++++.++
T Consensus 135 ---------~l~~~~~~~EL~~~~-------k~L~~-dpkNy~AW~~R~wv------l~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 135 ---------RISPQDPVSEIEYIH-------GSLLP-DPKNYHTWAYLHWL------YSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp ---------HHCCSCCHHHHHHHH-------HHTSS-CTTCHHHHHHHHHH------HHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ---------HhcCCChHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhccccccchhhHHHHHHHHH
Confidence 22 3 5678888774 34433 33355556544333 33334444 8888888
Q ss_pred HHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccC-------HHHHHHHHHHHHhC
Q 004743 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYA-------FQRGFEIYEKMCLD 381 (732)
Q Consensus 309 eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~-------~~~A~~lf~~M~~~ 381 (732)
++.+.... |-..| +. .-..+.+.+. ++++++.++++...
T Consensus 192 k~I~~dp~-N~SAW--------------------------------~~-R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 192 EMLRVDGR-NNSAW--------------------------------GW-RWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHCTT-CHHHH--------------------------------HH-HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC-CHHHH--------------------------------HH-HHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 88776321 22222 22 1122222222 67888888888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcC
Q 004743 382 EVPMNEASLTAVGRMAMSMGDG--------------------DMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNG 436 (732)
Q Consensus 382 gi~pd~~ty~~LI~~~~~~g~~--------------------~~A~~l~~~M~~~g-----~~pd~~ty~~lI~~~~~~g 436 (732)
. +-|...|+-+-..+.+.|+. ........++...+ -.+......-|...|+..|
T Consensus 238 ~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~ 316 (349)
T 3q7a_A 238 I-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQN 316 (349)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTT
T ss_pred C-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcC
Confidence 3 45888898877777777664 22222222222221 1355667777889999999
Q ss_pred ChHHHHHHHHHHHHC
Q 004743 437 DVDKACSVEEHMLEH 451 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~ 451 (732)
+.++|.++++.+.+.
T Consensus 317 ~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 317 RVDDAAKVFEKLSSE 331 (349)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998654
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=90.85 E-value=4.6 Score=35.81 Aligned_cols=116 Identities=11% Similarity=-0.017 Sum_probs=87.3
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
..-.+++++|...|.+-.+.|. |+.. |=..|...+.+++|++
T Consensus 5 ~g~~~d~~~A~~~~~~aa~~g~-~~a~-------------------------------------lg~~y~~g~~~~~A~~ 46 (138)
T 1klx_A 5 GTVKKDLKKAIQYYVKACELNE-MFGC-------------------------------------LSLVSNSQINKQKLFQ 46 (138)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-TTHH-------------------------------------HHHHTCTTSCHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHcCCC-Hhhh-------------------------------------HHHHHHcCCCHHHHHH
Confidence 3445567889998888877762 2111 1123344567788999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHH
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVE 445 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~----~g~~~~A~~l~ 445 (732)
.|++-.+.| +...+..|-..|.. .++.++|++.|++-.+.| +...+..|=..|.. .++.++|.+.|
T Consensus 47 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 47 YLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 999998886 67788888888888 899999999999988875 45566666677777 78999999999
Q ss_pred HHHHHCCC
Q 004743 446 EHMLEHGV 453 (732)
Q Consensus 446 ~~M~~~gv 453 (732)
+...+.|.
T Consensus 121 ~~Aa~~g~ 128 (138)
T 1klx_A 121 EKACRLGS 128 (138)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 99888763
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=90.75 E-value=4 Score=37.70 Aligned_cols=106 Identities=8% Similarity=0.025 Sum_probs=69.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVP-M-----NE-----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPR 421 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~-p-----d~-----~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g~~pd 421 (732)
.=..+.+.|++++|.+.|++..+-.-. | +. ..|+.+-.++.+.|++++|...+++-.+. -+.|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 335677889999999999987764211 1 22 37888888888888888888888876653 12555
Q ss_pred h-hhH----HHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 004743 422 L-RSY----GPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPELEAL 463 (732)
Q Consensus 422 ~-~ty----~~lI~~~~~~g~~~~A~~l~~~M~~-----~gv~pd~~ty~~L 463 (732)
. ..| ...=.++...|++++|.+.|+...+ .|+.+........
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3 344 4555666677777777777776643 2454444443333
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=90.72 E-value=1.3 Score=36.68 Aligned_cols=62 Identities=8% Similarity=0.063 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (732)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (732)
+...|..+-..|...|++++|...|++..+.. +-+...|..+-.+|...|++++|.+.|++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555555555555555555555554432 112334444555555555555555555543
No 201
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=90.65 E-value=4.7 Score=42.62 Aligned_cols=147 Identities=8% Similarity=-0.044 Sum_probs=96.0
Q ss_pred CCChhhhHHHHHHHHHh-----ccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh---cC--CHHHHHHHHHHHHH-
Q 004743 348 SIDNQDADEIRLSEDAK-----KYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMS---MG--DGDMAFDMVKRMKS- 415 (732)
Q Consensus 348 ~pd~~tyn~~lI~~~~k-----~g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~---~g--~~~~A~~l~~~M~~- 415 (732)
..|...|.. .+.+... .....+|..+|++..+. .|+ ...|..+.-+|.. .+ .......+-..+..
T Consensus 191 p~~~~Aydl-~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTN-FYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHH-HHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 345555555 4433322 23468999999998875 354 3444444333331 11 11111111111111
Q ss_pred ---cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh
Q 004743 416 ---LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (732)
Q Consensus 416 ---~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p 492 (732)
..-..+..+|..+-..+...|++++|...+++....+ |+...|..+=..+.-.|+.++|.+.+++-... .|.+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence 1234567788877777777899999999999999886 88888877777888999999999999888777 7888
Q ss_pred hHHHHHHHH
Q 004743 493 STADVIAKW 501 (732)
Q Consensus 493 ~t~~~I~~~ 501 (732)
.||..+...
T Consensus 344 ~t~~~~~~l 352 (372)
T 3ly7_A 344 NTLYWIENG 352 (372)
T ss_dssp HHHHHHHHS
T ss_pred ChHHHHhCc
Confidence 887665543
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=89.78 E-value=1.3 Score=36.84 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (732)
..|.. +-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|.+.|++..+
T Consensus 8 ~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 8 FTRYA-LAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445 7788899999999999999988764 33567899999999999999999999988654
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=89.55 E-value=1.7 Score=47.32 Aligned_cols=83 Identities=11% Similarity=-0.019 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHc---CCCC---C-hhhHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHH
Q 004743 401 GDGDMAFDMVKRMKSL---GINP---R-LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALLRV 466 (732)
Q Consensus 401 g~~~~A~~l~~~M~~~---g~~p---d-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-----g-v~pd-~~ty~~Li~~ 466 (732)
|++++|..++++..+. -+-| + ..+++.|-..|...|++++|..++++..+- | -.|+ ..+|+.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 5677777777665432 1222 2 367777777777778888877777776532 2 1233 3457777777
Q ss_pred HHhcCChHHHHHHHHHH
Q 004743 467 SVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 467 ~~~~g~~~~A~~l~~~M 483 (732)
|...|++++|..++++-
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 78888888888877653
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=89.28 E-value=1.2 Score=48.56 Aligned_cols=84 Identities=13% Similarity=0.079 Sum_probs=45.2
Q ss_pred hcCCHHHHHHHHHHHHHcC---CCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 004743 399 SMGDGDMAFDMVKRMKSLG---INPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALL 464 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g---~~pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-----g-v~pd-~~ty~~Li 464 (732)
+.|++++|..++++..+.. +.|+ ..+++.|...|...|++++|..++++..+- | -.|+ ..+|+.|-
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 3455666666665554321 1122 345666666666666666666666655431 1 1122 23456666
Q ss_pred HHHHhcCChHHHHHHHHH
Q 004743 465 RVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 465 ~~~~~~g~~~~A~~l~~~ 482 (732)
..|...|++++|..++++
T Consensus 379 ~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHH
Confidence 666666666666666654
No 205
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=89.11 E-value=1.6 Score=45.53 Aligned_cols=95 Identities=11% Similarity=-0.076 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh------------------hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------------------SYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~------------------ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
.|..+-..+.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|...++...+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555666777899999999999986654 34433 777888899999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.. .-+...|..+-.+|...|++++|...|++..+.
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 54 336788899999999999999999999987654
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.86 E-value=4.4 Score=47.08 Aligned_cols=77 Identities=13% Similarity=0.203 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~ 432 (732)
.|.. |-..+.+.++++.|.+.|..+.. |..+...|...|+.+...++-+.....|. |+....+|
T Consensus 683 ~W~~-la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~ 746 (814)
T 3mkq_A 683 KWRA-LGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAY 746 (814)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHH
Confidence 3444 66667777777777777776653 44555556666666665555544444432 34445555
Q ss_pred HhcCChHHHHHHH
Q 004743 433 CNNGDVDKACSVE 445 (732)
Q Consensus 433 ~~~g~~~~A~~l~ 445 (732)
.+.|++++|.+++
T Consensus 747 ~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 747 WIAGDIQGAKDLL 759 (814)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 5566665555544
No 207
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=88.78 E-value=13 Score=40.82 Aligned_cols=210 Identities=8% Similarity=-0.051 Sum_probs=124.9
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCC
Q 004743 169 QYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAK 248 (732)
Q Consensus 169 A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k 248 (732)
+..+|++..... +.+...|-..+.-+.+.|+++.|..+|++.... |.....-. .|+... +
T Consensus 198 v~~~ye~al~~~-------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~-------e 257 (493)
T 2uy1_A 198 MHFIHNYILDSF-------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVM-------D 257 (493)
T ss_dssp HHHHHHHHHHHT-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHT-------T
T ss_pred HHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhc-------c
Confidence 466788775432 122467888888889999999999999999987 54332211 233110 1
Q ss_pred CCCh-hhHHHHhhhccccchhhcccCCC-C---CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccc
Q 004743 249 SGSG-MRTLDTFEVSTMNSTELGDSRDM-D---NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (732)
Q Consensus 249 ~g~~-~~A~~~~~~~~~~s~em~~~~g~-~---d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~ 323 (732)
.+.+ ++..+.+... +.... +. . ....|-..+.- .-+.+.++.|..+|+.. . .|. .++.
T Consensus 258 ~~~~~~~l~~~~~~~-----~~~~~-~~~~~~~~~~lw~~y~~~------~~r~~~~~~AR~i~~~A-~---~~~-~~~~ 320 (493)
T 2uy1_A 258 EEAVYGDLKRKYSMG-----EAESA-EKVFSKELDLLRINHLNY------VLKKRGLELFRKLFIEL-G---NEG-VGPH 320 (493)
T ss_dssp CTHHHHHHHHHTC----------------CHHHHHHHHHHHHHH------HHHHHCHHHHHHHHHHH-T---TSC-CCHH
T ss_pred hhHHHHHHHHHHHhh-----ccchh-hhhcccccHHHHHHHHHH------HHHcCCHHHHHHHHHHh-h---CCC-CChH
Confidence 1111 1111111000 00000 00 0 11224333444 44566788899999877 2 232 2332
Q ss_pred hhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004743 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (732)
Q Consensus 324 ~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~ 403 (732)
+....+ .+...+ .++.+.|..+|+...+.- +-+...|...++...+.|+.
T Consensus 321 ---------------------------v~i~~A-~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 321 ---------------------------VFIYCA-FIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp ---------------------------HHHHHH-HHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred ---------------------------HHHHHH-HHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCH
Confidence 111112 333222 336999999999988753 22344567778888889999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 404 ~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
+.|..+|+... -....|...+..=...|+.+.+.++++.+..
T Consensus 371 ~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999862 2467788888877788999999998888763
No 208
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=88.75 E-value=5.1 Score=37.03 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------h-----hhHHHHHHHHHhcCChHHHHHHHHHHHHC-----
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--------L-----RSYGPALSVFCNNGDVDKACSVEEHMLEH----- 451 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd--------~-----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----- 451 (732)
+...-..+.+.|++++|...|++..+. .|+ . ..|+.+=.++.+.|++++|...++..++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 444555677899999999999987754 233 2 27888888999999999999999998874
Q ss_pred CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 452 GVYPEE-PEL----EALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 452 gv~pd~-~ty----~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.+.|+. ..| ...=.++...|++++|...|++-.+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 225664 456 6777888999999999999998754
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=88.71 E-value=1 Score=48.94 Aligned_cols=92 Identities=11% Similarity=0.044 Sum_probs=73.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC--C-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLD--E-VPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LR 423 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--g-i~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd-~~ 423 (732)
.+..+.+.|++++|.+++++..+. . +.|+ ..+++.|...|...|++++|+.++++.... | -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 456677889999999999988753 1 2222 457999999999999999999999987643 2 2344 46
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 424 SYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
+|+.|=..|...|+.++|..++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88889999999999999999998766
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=87.92 E-value=1.7 Score=47.32 Aligned_cols=86 Identities=7% Similarity=-0.085 Sum_probs=68.3
Q ss_pred hccCHHHHHHHHHHHHh---CCCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhhHHHHH
Q 004743 364 KKYAFQRGFEIYEKMCL---DEVPM---N-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LRSYGPAL 429 (732)
Q Consensus 364 k~g~~~~A~~lf~~M~~---~gi~p---d-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd-~~ty~~lI 429 (732)
..|++++|..++++..+ .-+.| + ..+++.|..+|...|++++|..++++.... | -.|+ ..+|+.|=
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35688999999987664 22223 3 368999999999999999999999987643 3 2344 46889999
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 004743 430 SVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~ 449 (732)
..|...|+.++|..++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 99999999999999998865
No 211
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=87.46 E-value=5.9 Score=37.24 Aligned_cols=102 Identities=10% Similarity=0.121 Sum_probs=82.2
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
.....|+++.|.++.+++ -+...|..|-+.....|+++-|.+.|..... |..+.--|.-.|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345789999999998887 3688999999999999999999999987543 4677777888999988
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
-..+-+.-...| -++.-...+.-.|+++++.++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 877766666555 2466666777889999999998765
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=85.24 E-value=3.4 Score=48.02 Aligned_cols=101 Identities=11% Similarity=0.070 Sum_probs=67.9
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 004743 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~ 442 (732)
...|++++|+++.+.+ .+...|..|-..+.+.|+++.|.+.|..+.. |..+...|...|+.++..
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 4456666666665433 4678899999999999999999999987643 455666666677777766
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
++-+.....|- ++.-..+|.+.|++++|.+++.++.
T Consensus 728 ~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 728 TLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 66655555542 2444455666777777777776653
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=84.96 E-value=4.1 Score=32.96 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=37.9
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~-ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (732)
..+.+.|++++|.+.|++..+.. +-+.. .|..+-.+|...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45566777777777777776643 22445 6677777777777777777777776654
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=84.70 E-value=3 Score=33.79 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=31.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
..+...|++++|...|++..+.. +-+.. .|..+-..|...|+.++|.+.|+...+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455666666666666655542 11233 4555555566666666666666666544
No 215
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=80.92 E-value=50 Score=34.13 Aligned_cols=228 Identities=8% Similarity=-0.047 Sum_probs=127.4
Q ss_pred HHHhcCCHH-HHHHHHHHHHHcCCCCCHH-HHHH---HHHHHHhcccCCcccC-CCCChhhHHHHhhhccccchhhcccC
Q 004743 200 MCSKRGDVM-GAIRLYDKAQREGIKLGQY-HYNV---LLYLCSSAAVGVVKPA-KSGSGMRTLDTFEVSTMNSTELGDSR 273 (732)
Q Consensus 200 a~~k~g~~~-~A~~lf~~M~~~Gi~pd~~-tyn~---LL~~~~~~~~~~~~~~-k~g~~~~A~~~~~~~~~~s~em~~~~ 273 (732)
...+.|.+. +|+++++.+... .|+.+ .||. +|....... .|. ....+++++..++ .+...
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~----~~~~~~~~l~~EL~~~~-------~~L~~- 103 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEK----SPEESAALVKAELGFLE-------SCLRV- 103 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHH-------HHHHH-
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccc----cchhhhHHHHHHHHHHH-------HHHHh-
Confidence 334566665 899999999854 45433 3443 222222100 000 0011455666663 22222
Q ss_pred CCCCccccccccccccccccccccC--ChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCCh
Q 004743 274 DMDNNGQLDYGSSPMIDKLESNSSY--RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (732)
Q Consensus 274 g~~d~~tyn~LI~~~~~~~~~~~~g--~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~ 351 (732)
...+-.+|+.--.. +...+ .+++++.+++.|.+.. ..-|
T Consensus 104 ~PKny~aW~hR~wl------L~~l~~~~~~~EL~~~~k~l~~d----prNy----------------------------- 144 (331)
T 3dss_A 104 NPKSYGTWHHRCWL------LSRLPEPNWARELELCARFLEAD----ERNF----------------------------- 144 (331)
T ss_dssp CTTCHHHHHHHHHH------HHHCSSCCHHHHHHHHHHHHHHC----TTCH-----------------------------
T ss_pred CCCCHHHHHHHHHH------HhccCcccHHHHHHHHHHHHHhC----CCCH-----------------------------
Confidence 22244445543333 44444 4788999888887752 2222
Q ss_pred hhhHHHHHHHHHhccC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHc
Q 004743 352 QDADEIRLSEDAKKYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM--------------GDGDMAFDMVKRMKSL 416 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~-~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~--------------g~~~~A~~l~~~M~~~ 416 (732)
..|+. ---.+.+.|. ++++++.++++.+.. +-|...|+-.-..+.+. +.++++++.+......
T Consensus 145 ~AW~~-R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 145 HCWDY-RRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HHHHH-HHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 22332 2222334455 588999999988865 45777887766666554 4577888888877655
Q ss_pred CCCCChhhHHHHHHHHHhc-----------CChHHHHHHHHHHHHCCCCCCHHHHHH--H---HHHHHhcCChHHHHHHH
Q 004743 417 GINPRLRSYGPALSVFCNN-----------GDVDKACSVEEHMLEHGVYPEEPELEA--L---LRVSVEAGKGDRVYYLL 480 (732)
Q Consensus 417 g~~pd~~ty~~lI~~~~~~-----------g~~~~A~~l~~~M~~~gv~pd~~ty~~--L---i~~~~~~g~~~~A~~l~ 480 (732)
. +-|...|+-+-..+.+. +.++++.+.++++.+. .||. .|+. + +.+....|..+++...+
T Consensus 223 ~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l 298 (331)
T 3dss_A 223 D-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYF 298 (331)
T ss_dssp S-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHH
Confidence 2 23456666544444444 4577888888888865 4554 3332 2 12223456677788888
Q ss_pred HHHHhc
Q 004743 481 HKLRTS 486 (732)
Q Consensus 481 ~~M~~~ 486 (732)
.++.+-
T Consensus 299 ~~l~~~ 304 (331)
T 3dss_A 299 STLKAV 304 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887754
No 216
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=77.67 E-value=7 Score=36.05 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=58.3
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCC-hhhHHHHHH
Q 004743 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG----------DMAFDMVKRMKSLGINPR-LRSYGPALS 430 (732)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~----------~~A~~l~~~M~~~g~~pd-~~ty~~lI~ 430 (732)
..+.+.+++|.+.++.-.+.. +-+...|+.+=.++...+++ ++|...|++..+. .|+ ...|..+=.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 346667888999998887754 44677777777777777664 4666666665543 343 345555656
Q ss_pred HHHhcC-----------ChHHHHHHHHHHHHCCCCCCHHHHH
Q 004743 431 VFCNNG-----------DVDKACSVEEHMLEHGVYPEEPELE 461 (732)
Q Consensus 431 ~~~~~g-----------~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (732)
+|...| ++++|.+.|++..+. .|+...|.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~ 128 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 128 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 665543 555555555555443 34444443
No 217
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=76.74 E-value=63 Score=36.06 Aligned_cols=132 Identities=4% Similarity=-0.044 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHH
Q 004743 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG-DVDKACSV 444 (732)
Q Consensus 368 ~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g--~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g-~~~~A~~l 444 (732)
++++++.++++.+.. +-+..+|+.---.+.+.| ++++|.+.++++.+... -|...|+.--..+.+.| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHH
Confidence 899999999998764 457788888888888889 77999999999998742 35677777767777788 89999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhccCCCChh-HHHHHHHHHhc
Q 004743 445 EEHMLEHGVYPEEPELEALLRVSVEA--------------GKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNS 504 (732)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~--------------g~~~~A~~l~~~M~~~~~~~~p~-t~~~I~~~~~~ 504 (732)
++.+.+.. .-|...|+..-..+.+. +.++++.+++++.... .|... .|.-.......
T Consensus 167 ~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhc
Confidence 99998765 34677777766666552 5578999999887765 44433 56555554443
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=76.35 E-value=17 Score=33.19 Aligned_cols=47 Identities=2% Similarity=-0.073 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q 004743 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG---DGDMAFDMVKRMKSL 416 (732)
Q Consensus 369 ~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g---~~~~A~~l~~~M~~~ 416 (732)
..+.+-|.+....|. ++..+--.+--++++.. +++++..+|++..+.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~ 64 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK 64 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 344555555444443 44444444555555555 444666666655554
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=75.90 E-value=45 Score=29.98 Aligned_cols=122 Identities=14% Similarity=0.097 Sum_probs=85.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C----------------CCCChhhHHH
Q 004743 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-G----------------INPRLRSYGP 427 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-g----------------~~pd~~ty~~ 427 (732)
.|.++++.++..+..... +..-||-+|--....-+.+-.+++++.+-+. . ..-+...+..
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ 96 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK 96 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHH
Confidence 456778888888877653 5566666666666666666666666654322 0 1123344566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh
Q 004743 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (732)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p 492 (732)
.|+.+...|.-|+-.+++.++.. +-.|+....-.+-.+|.+-|+..+|.+++.+--++ |+..
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k--G~kE 158 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK--GEKE 158 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHH
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh--hhHH
Confidence 77888888888888888888643 44678888888999999999999999999998887 5443
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=74.03 E-value=35 Score=34.70 Aligned_cols=121 Identities=10% Similarity=0.027 Sum_probs=78.2
Q ss_pred hhhHHHHHHHHHhc--c------CHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHH
Q 004743 352 QDADEIRLSEDAKK--Y------AFQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSM-----GDGDMAFDMVKRMKS 415 (732)
Q Consensus 352 ~tyn~~lI~~~~k~--g------~~~~A~~lf~~M~~~gi~pd---~~ty~~LI~~~~~~-----g~~~~A~~l~~~M~~ 415 (732)
..|..+...++... | .+..|..++++..+- .|+ ...|++|-..|.+. |+.++|.+.|++-.+
T Consensus 155 L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~ 232 (301)
T 3u64_A 155 LYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR 232 (301)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH
Confidence 44666555555443 2 234555555555543 455 56788888888884 888888888888766
Q ss_pred cCCCC--ChhhHHHHHHHHHhc-CChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 416 LGINP--RLRSYGPALSVFCNN-GDVDKACSVEEHMLEHGVY--PEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 416 ~g~~p--d~~ty~~lI~~~~~~-g~~~~A~~l~~~M~~~gv~--pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
. .| +.-++...-..+|.. |+.++|.+.+++....... |+....|.+ .-.+|..++.++.
T Consensus 233 L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~ 296 (301)
T 3u64_A 233 Y--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQ 296 (301)
T ss_dssp H--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHH
T ss_pred h--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhH
Confidence 4 35 366666677777774 8888888888888877666 664444433 2345556665543
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=72.02 E-value=33 Score=31.25 Aligned_cols=82 Identities=12% Similarity=-0.015 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCChHHHH
Q 004743 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---DVDKACSVEEHMLEHGVYP-E-EPELEALLRVSVEAGKGDRVY 477 (732)
Q Consensus 403 ~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g---~~~~A~~l~~~M~~~gv~p-d-~~ty~~Li~~~~~~g~~~~A~ 477 (732)
+..+.+-|.+....|- ++..+---+=-++++.. +++++..++++..+.. .| + ...+=.|--+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556667766666655 56555555666788888 7779999999998865 34 2 223333445679999999999
Q ss_pred HHHHHHHhc
Q 004743 478 YLLHKLRTS 486 (732)
Q Consensus 478 ~l~~~M~~~ 486 (732)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999876
No 222
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=71.98 E-value=14 Score=39.25 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHH
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPE 459 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~-----~gv~pd~~t 459 (732)
...++..+...|+.++|...+..+... -+.+...|-.+|.+|.+.|+..+|.+.|+.... -|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344556666677777777666666544 234566677777777777777777777766532 366665544
No 223
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=70.93 E-value=53 Score=38.05 Aligned_cols=125 Identities=12% Similarity=0.058 Sum_probs=78.4
Q ss_pred HHHHHHhccC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc------CCCCChh------
Q 004743 358 RLSEDAKKYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG-DMAFDMVKRMKSL------GINPRLR------ 423 (732)
Q Consensus 358 lI~~~~k~g~-~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~-~~A~~l~~~M~~~------g~~pd~~------ 423 (732)
|+..+...+. .+.|.++|+++....-.-+.....++|..+...++- -+|.+++.+..+. .+.+...
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 3333444455 688999999998874222222334444444444322 2455555554321 2222211
Q ss_pred hH-HHHH----HHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 424 SY-GPAL----SVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 424 ty-~~lI----~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
.+ ..|+ ..|...|+.+.|+++-+..... .|+ ..+|-.|..+|.+.|+++.|+-.++.+.
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11 1133 3355679999999999887754 455 7899999999999999999999999873
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=69.85 E-value=18 Score=38.17 Aligned_cols=74 Identities=14% Similarity=0.037 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004743 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (732)
+.+..+|.++--.+...|++++|...+++....+ |+...|..+=..+.-.|+.++|.+.|++.... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5567777777666666788888888888877765 66666655556666778888888888776654 46666654
No 225
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.58 E-value=26 Score=31.21 Aligned_cols=72 Identities=11% Similarity=-0.011 Sum_probs=43.1
Q ss_pred HHHHHHhcc-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004743 358 RLSEDAKKY-AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (732)
Q Consensus 358 lI~~~~k~g-~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~ 430 (732)
.+..+-+.. +.-+..+-++.+-...+.|+.....+.+++|-+..++..|.++|+-.+.+ +.+...+|..+|+
T Consensus 58 y~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 58 WVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 333444444 44455555555556667777777777777777777777777777666544 3344445665553
No 226
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=68.91 E-value=41 Score=28.44 Aligned_cols=71 Identities=11% Similarity=-0.004 Sum_probs=45.2
Q ss_pred HHHHHhcc-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004743 359 LSEDAKKY-AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (732)
Q Consensus 359 I~~~~k~g-~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~ 430 (732)
+..+-+.. +.-+..+-++.+-...+.|+.....+.+++|-+..++..|.++|+-.+.+ +.+...+|..+|+
T Consensus 16 ~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 16 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 33343444 44555666666666777777777777777777777777777777776654 3334445665554
No 227
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=66.71 E-value=14 Score=39.25 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=56.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS-----LGINPRLRS 424 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~t 424 (732)
++..+...|+.++|...+..+.... +.++..|-.||.+|.+.|+..+|.+.|+.+.. .|+.|...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6677888999999999998887653 66999999999999999999999999998764 388887543
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=66.07 E-value=36 Score=27.76 Aligned_cols=21 Identities=10% Similarity=-0.075 Sum_probs=9.2
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 004743 430 SVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~ 450 (732)
..+.+.|++++|...|+.+.+
T Consensus 51 ~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 51 NDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444444443
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=65.74 E-value=67 Score=29.95 Aligned_cols=80 Identities=13% Similarity=0.067 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~ 431 (732)
..|.. |=...-..|+++-|.+.|..... |..|.-.|.-.|+.+.-.++-+.-...|- ||.....
T Consensus 35 ~~Wk~-Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~~~g~------~n~af~~ 98 (177)
T 3mkq_B 35 ITWER-LIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQTRED------FGSMLLN 98 (177)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHHHTTC------HHHHHHH
T ss_pred HHHHH-HHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHHHCcc------HHHHHHH
Confidence 34556 77888889999999999998763 56677777788888877766655555543 6777788
Q ss_pred HHhcCChHHHHHHHHH
Q 004743 432 FCNNGDVDKACSVEEH 447 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~ 447 (732)
+.-.|+++++.++|.+
T Consensus 99 ~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 99 TFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 8889999999888754
No 230
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=65.20 E-value=5 Score=38.59 Aligned_cols=29 Identities=7% Similarity=-0.134 Sum_probs=22.5
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCcccc
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty 322 (732)
.+..|+.+.+..+++.+.+.|..++....
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 44 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNN 44 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 57789999888888888888877665543
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=65.17 E-value=36 Score=28.08 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=9.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 004743 392 AVGRMAMSMGDGDMAFDMVKR 412 (732)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~ 412 (732)
.|-..+...|+++.|...|++
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~ 30 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQ 30 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHH
Confidence 333444444444444444444
No 232
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.68 E-value=11 Score=36.85 Aligned_cols=42 Identities=10% Similarity=0.054 Sum_probs=18.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCChHH
Q 004743 399 SMGDGDMAFDMVKRMKSLGINPRLRS--YGPALSVFCNNGDVDK 440 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~pd~~t--y~~lI~~~~~~g~~~~ 440 (732)
..|......++++.+.+.|..++... -.+.+...++.|+.+-
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 234 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 34444444455555555555544321 1233444445555443
No 233
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.20 E-value=19 Score=34.39 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004743 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (732)
Q Consensus 196 ~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd 225 (732)
+.|...++.|+.+....+++.+.+.|..++
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 345666778888888888887777776554
No 234
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=63.01 E-value=27 Score=31.98 Aligned_cols=95 Identities=6% Similarity=-0.116 Sum_probs=67.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 004743 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD----------VDKACSVEEHMLEHGVYP-EEPELEALLRV 466 (732)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~----------~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~ 466 (732)
.+.+.+++|.+.++.-.+.. +-+...|+.+=.++...++ +++|...|++.++.. | +...|..|=.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHH
Confidence 45567888999998877652 2345666656566666665 458999999888754 4 45678888888
Q ss_pred HHhc-----------CChHHHHHHHHHHHhccCCCChhHHHH
Q 004743 467 SVEA-----------GKGDRVYYLLHKLRTSVRKVSPSTADV 497 (732)
Q Consensus 467 ~~~~-----------g~~~~A~~l~~~M~~~~~~~~p~t~~~ 497 (732)
|... |++++|...|++-.+- .|....|.-
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 8766 4899999999998876 555445543
No 235
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=60.26 E-value=67 Score=26.04 Aligned_cols=68 Identities=10% Similarity=-0.042 Sum_probs=48.4
Q ss_pred ChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC
Q 004743 421 RLRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS 491 (732)
Q Consensus 421 d~~ty~~lI~~~~~~g~---~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~ 491 (732)
|...+..+-.++...++ .++|..++++..+.. .-+...+..+=..+.+.|++++|...++++.+. .+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~--~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS--NDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC--CCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC
Confidence 44455555555544443 689999999888753 234455666667789999999999999999887 444
No 236
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=59.47 E-value=1.4e+02 Score=33.18 Aligned_cols=128 Identities=7% Similarity=-0.033 Sum_probs=94.5
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004743 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD----------GDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (732)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~----------~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~ 433 (732)
....-++|++.++++.... +-+...|+.-=..+.+.|+ +++|.+.++.+.+.. +=+...|+.---.+.
T Consensus 41 ~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 41 AGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3445678899999998764 2345667765555566666 899999999998753 224556777666677
Q ss_pred hcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhccCCCChh-HHH
Q 004743 434 NNG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG-KGDRVYYLLHKLRTSVRKVSPS-TAD 496 (732)
Q Consensus 434 ~~g--~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g-~~~~A~~l~~~M~~~~~~~~p~-t~~ 496 (732)
+.| ++++|.+.++.+.+.. .-|...|+.---++.+.| ..+++.+.++++.+. .|+.. .|.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~ 182 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWH 182 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHH
T ss_pred HcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHH
Confidence 788 7799999999999876 347788887777777888 889999999988776 55544 443
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=57.73 E-value=50 Score=28.96 Aligned_cols=89 Identities=7% Similarity=-0.039 Sum_probs=49.0
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC-Ch--hhHHHHHHHHH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM---AFDMVKRMKSLGINP-RL--RSYGPALSVFC 433 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~---A~~l~~~M~~~g~~p-d~--~ty~~lI~~~~ 433 (732)
+.......+..+.+-|.+....|. |+..+--.+.-++.+.....+ +..++++..+.+- | +. ..|. |=-++.
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~-LAvg~y 85 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFY-LAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHH-HHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHH-HHHHHH
Confidence 333334445556666665555453 555555556666777666655 7777777666531 2 22 2222 223456
Q ss_pred hcCChHHHHHHHHHHHHC
Q 004743 434 NNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~ 451 (732)
+.|+.++|.+.++.+.+.
T Consensus 86 klg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHh
Confidence 666666666666666543
No 238
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=57.41 E-value=78 Score=25.88 Aligned_cols=62 Identities=18% Similarity=0.056 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 425 YGPALSVFCNNGDVDKACSVEEHMLEH------GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~------gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+-.|=..+.+.|+++.|...|+...+. .-.+....|..|-.+|.+.|+.++|..++++....
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344566778899999999999887653 12345678899999999999999999999998765
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=56.13 E-value=47 Score=30.32 Aligned_cols=59 Identities=12% Similarity=0.025 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHH
Q 004743 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADV 497 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~-t~~~ 497 (732)
+++++|.++|+.+...+-.- ...|-..-..=.+.|++..|.+++..-... ++.|. ..++
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~--~~k~~~~le~ 133 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVER--GAVPLEMLEI 133 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCBCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence 67777777777776542222 555555555557788888888888877766 66665 4444
No 240
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=52.90 E-value=63 Score=29.04 Aligned_cols=60 Identities=15% Similarity=0.032 Sum_probs=40.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (732)
.++.....|+-|.-.+++.++.. +.+|+....-.+-.+|.+.|+..+|.+++.+--+.|+
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 56666777777777777776433 3356666666777777777777777777777666665
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=51.92 E-value=44 Score=28.26 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-+..+-++.+....+.|+.....+.|++|-+..++..|.++|+-++.+
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344444555555555666666666666666666666666666655554
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=51.42 E-value=1.4e+02 Score=27.12 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=71.1
Q ss_pred ChhhhHHHHHHHHHhccCH------HHHHHHHHHHHhCCCCCCHH-HHHHHHHH------HHhcCCHHHHHHHHHHHHHc
Q 004743 350 DNQDADEIRLSEDAKKYAF------QRGFEIYEKMCLDEVPMNEA-SLTAVGRM------AMSMGDGDMAFDMVKRMKSL 416 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~------~~A~~lf~~M~~~gi~pd~~-ty~~LI~~------~~~~g~~~~A~~l~~~M~~~ 416 (732)
|..+|.. .+...-+.|+. ++..++|++-.. .++|+.. .|-.-|.. +-..+++++|.++|+.+.+.
T Consensus 12 ~yd~W~~-yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLS-LLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHH-HHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHH-HHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5566777 66777777888 888888887665 4566531 22222222 22467899999999999776
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004743 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (732)
Q Consensus 417 g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd 456 (732)
+-+- ...|-.--..-.+.|++.+|.+++..-...+-+|.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 4333 45555555555678999999999999988876664
No 243
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=49.36 E-value=2.3e+02 Score=28.99 Aligned_cols=131 Identities=4% Similarity=-0.041 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hHHHHHH
Q 004743 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD-VDKACSV 444 (732)
Q Consensus 368 ~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g--~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~-~~~A~~l 444 (732)
+++++.+++.+.... +-+..+|+.---.+.+.| .+++++.+++.+.+.. +-|-..|+.---.+...|. .+++.+.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 678999999988754 457888888777777878 4899999999998763 2356667666666677787 5899999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhccCCCChh-HHHHHHHHHh
Q 004743 445 EEHMLEHGVYPEEPELEALLRVSVEA--------------GKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFN 503 (732)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~--------------g~~~~A~~l~~~M~~~~~~~~p~-t~~~I~~~~~ 503 (732)
++.+.+.. .-|...|+..-..+.+. +.++++++++...... .|... .|.-....+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 99999876 34667777665555443 4578888888887765 44443 5554444443
No 244
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=47.31 E-value=1.1e+02 Score=30.95 Aligned_cols=84 Identities=12% Similarity=0.068 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChH
Q 004743 404 DMAFDMVKRMKSLGINPR---LRSYGPALSVFCN-----NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-GKGD 474 (732)
Q Consensus 404 ~~A~~l~~~M~~~g~~pd---~~ty~~lI~~~~~-----~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~-g~~~ 474 (732)
..|..++++..+ +.|+ -..|..+-..|.+ -|+.++|.+.|++..+-+-.-+..++...-+.+|+. |+.+
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 355555555544 3465 5688888888999 499999999999998764211477778888888985 9999
Q ss_pred HHHHHHHHHHhccCCCC
Q 004743 475 RVYYLLHKLRTSVRKVS 491 (732)
Q Consensus 475 ~A~~l~~~M~~~~~~~~ 491 (732)
++.++|++-... .+.
T Consensus 258 ~a~~~L~kAL~a--~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAI--DPE 272 (301)
T ss_dssp HHHHHHHHHHHC--CGG
T ss_pred HHHHHHHHHHcC--CCC
Confidence 999999998887 444
No 245
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=45.69 E-value=29 Score=33.78 Aligned_cols=84 Identities=17% Similarity=0.066 Sum_probs=42.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHH
Q 004743 393 VGRMAMSMGDGDMAFDMVKRMKSL-GINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE--LEALLRV 466 (732)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~-g~~pd~---~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t--y~~Li~~ 466 (732)
.+...+..|+.+-+..++ +. |..++. .-.++ +...+..|+.....++.+.+.+.|..++... -.+.+..
T Consensus 151 ~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~ 225 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILL----DEMGADVNACDNMGRNA-LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225 (285)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTSCCCTTCCCTTSCCH-HHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHH----HhcCCCCCccCCCCCCH-HHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 344445566655444333 33 444432 22333 3334455655555666677777776655422 1234445
Q ss_pred HHhcCChHHHHHHHH
Q 004743 467 SVEAGKGDRVYYLLH 481 (732)
Q Consensus 467 ~~~~g~~~~A~~l~~ 481 (732)
.++.|..+-+..+++
T Consensus 226 A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 226 AVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 566676665555554
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=44.78 E-value=2e+02 Score=34.94 Aligned_cols=142 Identities=11% Similarity=-0.010 Sum_probs=93.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP----------------- 420 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p----------------- 420 (732)
++..+.+.+..+-|.++..-. +-|...-=.+-.+|...|++++|.++|.+-. .|+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhccccccccc
Confidence 555666667766666654432 2233332234456678999999999997521 12211
Q ss_pred ------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--H--HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 004743 421 ------RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE--E--PELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490 (732)
Q Consensus 421 ------d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd--~--~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~ 490 (732)
-..=|..++.-|-+.+..+.+.++-....+..-.-+ . ..|..+++++...|++++|+..+-.+... ..
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--~~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--PL 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS--SS
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH--HH
Confidence 112367788889999999998888766554422212 1 25888999999999999999999999876 44
Q ss_pred Chh-HHHHHHHHHhchHH
Q 004743 491 SPS-TADVIAKWFNSKEA 507 (732)
Q Consensus 491 ~p~-t~~~I~~~~~~~~~ 507 (732)
..+ .-..|...|+.+..
T Consensus 970 r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhCCCh
Confidence 555 33447778876554
No 247
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.94 E-value=32 Score=32.67 Aligned_cols=116 Identities=9% Similarity=-0.035 Sum_probs=65.1
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHh
Q 004743 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS--YGPALSVFCN 434 (732)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t--y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t--y~~lI~~~~~ 434 (732)
+...++.|..+ +++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...++
T Consensus 115 L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 186 (237)
T 3b7b_A 115 MIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAAR 186 (237)
T ss_dssp HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 34445566644 4445555665544321 122344445566655 4555556676665432 1235556667
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 435 NGDVDKACSVEEHMLEHGVYPEEPE--LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~t--y~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|+.+-+ +.+.+.|..++... -.+-+...+..|+.+.+.++.+.+.+.
T Consensus 187 ~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 187 ENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp TTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred hCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7776544 44555666654321 224455567888888888888888764
No 248
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.38 E-value=28 Score=33.74 Aligned_cols=119 Identities=10% Similarity=0.034 Sum_probs=61.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH----------------HHHHHHHHHhcCCHHHHHHHHHHHHH---cCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS----------------LTAVGRMAMSMGDGDMAFDMVKRMKS---LGI 418 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t----------------y~~LI~~~~~~g~~~~A~~l~~~M~~---~g~ 418 (732)
.+...+..|..+- ++.+.+.|..++... -.+.+...+..|+.+- ++.+.+ .|.
T Consensus 96 ~L~~A~~~g~~~~----v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~----v~~Ll~~~~~ga 167 (260)
T 3jxi_A 96 ALHIAIERRCKHY----VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI----VHYLTENGHKQA 167 (260)
T ss_dssp HHHHHHHTTCHHH----HHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHH----HHHHHHCSSCCC
T ss_pred HHHHHHHcCCHHH----HHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHH----HHHHHhccccCC
Confidence 3444556677554 444445676665442 2244555566777654 444455 566
Q ss_pred CCCh---hhHHHHHHHHHhcCC-----hHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChHHHHHHH
Q 004743 419 NPRL---RSYGPALSVFCNNGD-----VDKACSVEEHMLEHGVYP----------EEPELEALLRVSVEAGKGDRVYYLL 480 (732)
Q Consensus 419 ~pd~---~ty~~lI~~~~~~g~-----~~~A~~l~~~M~~~gv~p----------d~~ty~~Li~~~~~~g~~~~A~~l~ 480 (732)
.++. .-.++|..++ ..|+ .+...++.+.+.+.|..+ |..-. +-|...++.|+.+-+..|+
T Consensus 168 ~~~~~d~~g~TpLh~A~-~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~-tpL~~A~~~g~~~~v~~Ll 245 (260)
T 3jxi_A 168 DLRRQDSRGNTVLHALV-AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGL-SPLMMAAKTGKIGIFQHII 245 (260)
T ss_dssp CTTCCCTTSCCHHHHHH-HHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSC-CHHHHHHHTTCHHHHHHHH
T ss_pred CCcccCCCCCcHHHHHH-HhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCC-CHHHHHHHcCCHHHHHHHH
Confidence 5554 3344554444 3333 222245555555554332 22222 3344557778888777777
Q ss_pred HHHHhc
Q 004743 481 HKLRTS 486 (732)
Q Consensus 481 ~~M~~~ 486 (732)
++-...
T Consensus 246 ~~g~~~ 251 (260)
T 3jxi_A 246 RREIAD 251 (260)
T ss_dssp HHHHHH
T ss_pred HhCCCc
Confidence 665443
No 249
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.95 E-value=1.6e+02 Score=28.62 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
.++.......+..+.+-|+.++|.++|-+.+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 3344445555566666666666666665443
No 250
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=37.65 E-value=38 Score=31.96 Aligned_cols=110 Identities=20% Similarity=0.199 Sum_probs=51.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS--YGPALSVF 432 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t--y~~lI~~~ 432 (732)
.+...+..|..+- ++.+.+.|..++. ..++.| ...+..|+.+ +++.+.+.|..++... ..+.+...
T Consensus 43 ~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A 113 (231)
T 3aji_A 43 ALHWACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPL-HIAASAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYA 113 (231)
T ss_dssp HHHHHHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHH-HHHHHcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 3444456666443 3444445554432 223333 3344556654 4444455565554322 12344455
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHH
Q 004743 433 CNNGDVDKACSVEEHMLEHGVYPEEPE--LEALLRVSVEAGKGDRVYYLL 480 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~t--y~~Li~~~~~~g~~~~A~~l~ 480 (732)
+..|+.+-+ +.+.+.|..|+... -.+.+...+..|..+-+..++
T Consensus 114 ~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 114 ASKNRHEIA----VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp HHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHcCCHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 566766543 34445565554322 123344445666665554444
No 251
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.10 E-value=3.1e+02 Score=26.56 Aligned_cols=139 Identities=8% Similarity=0.100 Sum_probs=82.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHh--CCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCL--DEVPM----NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~--~gi~p----d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~ 431 (732)
-++.+.-..++++|.+++++.+. .++++ +...-...|+.-.....-.-+..+.+++.. .++...--..+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 46777888999999999998775 23332 112233345555555555566777777633 4667777788899
Q ss_pred HHhcCChHHHHHHHHHHH---------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC--hhHHHHHHH
Q 004743 432 FCNNGDVDKACSVEEHML---------EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS--PSTADVIAK 500 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~---------~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~--p~t~~~I~~ 500 (732)
+.+-|+-++|.++|=+.. .-+..-|...|..=|.-. ....+..+..-|... .+. |.....+..
T Consensus 101 L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~Ls~i-~Fs~I~~t~~~f~~~-----F~~~~~~~~S~lV~ 174 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLAVI-RFQTIKKTVEDFQDI-----FKELGAKISSILVD 174 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHHHH-HHHHHHHHHHHHHHH-----STTCCHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH-HHHHHHHHHHHHHHH-----hCCCCcccccHHHH
Confidence 999999999999985543 234455566665433221 112233444444443 222 334445777
Q ss_pred HHhch
Q 004743 501 WFNSK 505 (732)
Q Consensus 501 ~~~~~ 505 (732)
||...
T Consensus 175 Wa~~e 179 (235)
T 2d2s_A 175 WCSDE 179 (235)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87664
No 252
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.57 E-value=1.2e+02 Score=26.51 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD--VDKACSVEEHMLEHGVYP 455 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~--~~~A~~l~~~M~~~gv~p 455 (732)
.+.+|.-|...|+.++|.+.++++..-.. -...++..+..++=+.++ .+.+..++..+...|+.+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34556666666666666666666541111 112233333444444322 244555555555555433
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=35.12 E-value=1e+02 Score=27.52 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..+-++.+....+.|+.....+.|++|-+..++..|.++|+-++.+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4444445555556666666666666666666666666666666555
No 254
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.96 E-value=1.3e+02 Score=29.55 Aligned_cols=110 Identities=12% Similarity=0.115 Sum_probs=56.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g 436 (732)
.+...+..|..+ +++.+.+.|..+ +...-.+.+...+..|+.+-+.-+++.-..-.. .|..-+++.+...+..|
T Consensus 132 ~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~ 206 (285)
T 3kea_A 132 SFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNK 206 (285)
T ss_dssp HHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHT
T ss_pred HHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcC
Confidence 344455666654 444444555433 221233445556677887766666654222111 22223344455566677
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~ 481 (732)
+. ++.+.+.+.|..|+.... .-+..|+.+-+..+++
T Consensus 207 ~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~ 242 (285)
T 3kea_A 207 DI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIE 242 (285)
T ss_dssp CH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHH
T ss_pred CH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHH
Confidence 75 455556677887776652 1144555554444443
No 255
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=32.61 E-value=52 Score=29.20 Aligned_cols=50 Identities=26% Similarity=0.296 Sum_probs=34.4
Q ss_pred hHHHHHHHHHcCceeeC---CCCCCchHHHHHHHHhCCcEEEeCccccccccc
Q 004743 663 NRALIEKWKNADALYAT---PTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQ 712 (732)
Q Consensus 663 ~~~~~~~~~~~~~~~~~---~~~s~DD~~~lyaa~~~~~~~vsnD~~RdH~~~ 712 (732)
..+.++++++...+=.. |.++.=|--++-.|...+|.+||||..---..+
T Consensus 61 gL~iL~~L~~~~~vei~~~~~~~~~vD~~ll~lA~~~~~~lvTnD~~L~kvA~ 113 (134)
T 3ix7_A 61 GLETLERLREAAPLEVLETTPKGESVDEKLLFLARDLEAALVTNDHALLQMAR 113 (134)
T ss_dssp HHHHHHHHHHHSCEEEECCCCSCSSHHHHHHHHHHHTTCEEEESCHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEeCCCCCcccHHHHHHHHHHHhCCEEEeCCHHHHHHHH
Confidence 34566776664433222 445666999999999999999999976544443
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.46 E-value=3e+02 Score=29.15 Aligned_cols=102 Identities=11% Similarity=-0.028 Sum_probs=71.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCh----hhHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRL----RSYGPA 428 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~---g~~pd~----~ty~~l 428 (732)
+-..|.+.|+++.|.+.|.++... +..--...|-.+|+.+...+++..|...+++.... +-.|+. ..|..+
T Consensus 137 la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl 216 (429)
T 4b4t_R 137 LGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGI 216 (429)
T ss_dssp HHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Confidence 778899999999999999999974 33333567888899999999999999998887543 333332 233333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004743 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (732)
+ +...+++..|...|-+....--..+..++.
T Consensus 217 ~--~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~ 247 (429)
T 4b4t_R 217 H--CLAVRNFKEAAKLLVDSLATFTSIELTSYE 247 (429)
T ss_dssp G--GGGTSCHHHHHHHHHHHHHHSCCSCHHHHH
T ss_pred H--HHHhChHHHHHHHHHHHhccCCccchhhHH
Confidence 3 345688999888887766543344444443
No 257
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=30.78 E-value=97 Score=28.56 Aligned_cols=28 Identities=7% Similarity=-0.267 Sum_probs=15.6
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccc
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~t 321 (732)
.+..|..+.-.++.+-+.+.|..||...
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadvn~~d 72 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADIKSRT 72 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCSSCCC
T ss_pred HHHcCCcchHHHHHHHHHHCCCCCCCCC
Confidence 3445555544555556666666666544
No 258
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=30.62 E-value=2.5e+02 Score=24.46 Aligned_cols=84 Identities=12% Similarity=-0.016 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC-CHHHHH-HHHHHHHhcCChHH
Q 004743 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK---ACSVEEHMLEHGVYP-EEPELE-ALLRVSVEAGKGDR 475 (732)
Q Consensus 401 g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~---A~~l~~~M~~~gv~p-d~~ty~-~Li~~~~~~g~~~~ 475 (732)
..+..+.+-+.+....|. |+..+---+--++.++.+... +..+++++...+ .| +...|. .|--|+.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344555666665555555 444443335556777775555 889999988764 23 233333 34457789999999
Q ss_pred HHHHHHHHHhc
Q 004743 476 VYYLLHKLRTS 486 (732)
Q Consensus 476 A~~l~~~M~~~ 486 (732)
|.+.++.+.+.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999877
No 259
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=29.47 E-value=63 Score=31.47 Aligned_cols=190 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccch
Q 004743 195 RVELDMCSKRGDVMGAIRLYDKAQREGIKL-------GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (732)
Q Consensus 195 n~lI~a~~k~g~~~~A~~lf~~M~~~Gi~p-------d~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~ 267 (732)
.+.|...++.|+++....+++...+.|... |..-++.|..++.
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~------------------------------ 63 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML------------------------------ 63 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHH------------------------------
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHH------------------------------
Q ss_pred hhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCC----------CCccccchhhhhhccccccCC
Q 004743 268 ELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF----------SNGHMKLNSQLLDGRSNLERG 337 (732)
Q Consensus 268 em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~----------Pd~~ty~~~~li~~~~~~a~~ 337 (732)
+.+.|+.+-+.-|++.-...+.. +|..-.+
T Consensus 64 --------------------------~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~t-------------- 103 (273)
T 2pnn_A 64 --------------------------NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQT-------------- 103 (273)
T ss_dssp --------------------------SCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCC--------------
T ss_pred --------------------------HHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCC--------------
Q ss_pred CchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH----------------HHHHHHHHHhcC
Q 004743 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS----------------LTAVGRMAMSMG 401 (732)
Q Consensus 338 ~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t----------------y~~LI~~~~~~g 401 (732)
.+...+..|. .++++.+.+.|..++... -.+.|...+..|
T Consensus 104 --------------------pL~~A~~~g~----~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g 159 (273)
T 2pnn_A 104 --------------------ALHIAIERRN----MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159 (273)
T ss_dssp --------------------HHHHHHHTTC----HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTT
T ss_pred --------------------HHHHHHHcCC----HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcC
Q ss_pred CHHHHHHHHHHHHH---cCCCCChhhHH--HHHHHHHhcCC-----hHHHHHHHHHHHHCCCCCC---------HHHHHH
Q 004743 402 DGDMAFDMVKRMKS---LGINPRLRSYG--PALSVFCNNGD-----VDKACSVEEHMLEHGVYPE---------EPELEA 462 (732)
Q Consensus 402 ~~~~A~~l~~~M~~---~g~~pd~~ty~--~lI~~~~~~g~-----~~~A~~l~~~M~~~gv~pd---------~~ty~~ 462 (732)
+. ++++.+.+ .|..++..... +.|...+..|+ .+...++.+.+.+.|..++ ...-.+
T Consensus 160 ~~----~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~T 235 (273)
T 2pnn_A 160 QL----AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT 235 (273)
T ss_dssp CH----HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC
T ss_pred CH----HHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCC
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 004743 463 LLRVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 463 Li~~~~~~g~~~~A~~l~~~ 482 (732)
-|...++.|..+-+..|++.
T Consensus 236 pL~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 236 PLALAASSGKIGVLAYILQR 255 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHC
No 260
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=28.83 E-value=46 Score=29.49 Aligned_cols=112 Identities=18% Similarity=0.171 Sum_probs=59.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL--TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFC 433 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty--~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty--~~lI~~~~ 433 (732)
.+...++.|+++....+++. .+..++.... .+.+...+..|+.+ +++.+.+.|..++.... .+.|...+
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 44556677887776666543 2222222111 13444556677754 44555566776654433 23455566
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHH
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLL 480 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty--~~Li~~~~~~g~~~~A~~l~ 480 (732)
..|+.+- .+.+.+.|..++.... .+.+...+..|..+-+..++
T Consensus 84 ~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 128 (165)
T 3twr_A 84 SYGHYEV----AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128 (165)
T ss_dssp HTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCcHHH----HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 7787654 4445556766553321 13344456667766554444
No 261
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.65 E-value=1.1e+02 Score=27.71 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCC
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD--VDKACSVEEHMLEHGVY 454 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~--~~~A~~l~~~M~~~gv~ 454 (732)
.+.+|.-|...|+.++|.+.++++..-.. -...++..+..++=+.++ .+.+..++..+...|+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34556666666666666666666532111 112233333444443222 33445555555555543
No 262
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.08 E-value=66 Score=32.92 Aligned_cols=214 Identities=14% Similarity=-0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc
Q 004743 195 RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYN--VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (732)
Q Consensus 195 n~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn--~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~ 272 (732)
.+.|...+..|+++.+..+++. |..++..... +.|...+ ..|..+-+.-+++
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~----g~~~~~~d~~g~t~L~~A~----------~~g~~~~v~~Ll~------------ 74 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET----GVSPTIQNRFGCTALHLAC----------KFGCVDTAKYLAS------------ 74 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHH----------HHCCHHHHHHHHH------------
T ss_pred CCHHHHHHHcCCHHHHHHHHHc----CCCccccCCCCCcHHHHHH----------HcCCHHHHHHHHH------------
Q ss_pred CCCC-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc--------------------cccchhhhhhcc
Q 004743 273 RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG--------------------HMKLNSQLLDGR 331 (732)
Q Consensus 273 ~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~--------------------~ty~~~~li~~~ 331 (732)
.|.. +.....+.+.. -+..|+.+-+..+++.-...|..|+. .-.+
T Consensus 75 ~g~~~~~~~g~t~L~~------A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-------- 140 (364)
T 3ljn_A 75 VGEVHSLWHGQKPIHL------AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT-------- 140 (364)
T ss_dssp HCCCCCCBTTBCHHHH------HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCC--------
T ss_pred CCCCccccCCCCHHHH------HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCC--------
Q ss_pred ccccCCCchhhhccCCCCChhhhHHHHHHHHHhcc--CHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHH
Q 004743 332 SNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY--AFQRGFEIYEKMCLDEVPMNEASL--TAVGRMAMSMGDGDMAF 407 (732)
Q Consensus 332 ~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g--~~~~A~~lf~~M~~~gi~pd~~ty--~~LI~~~~~~g~~~~A~ 407 (732)
.+...+..| ..+-+..+++. |..++.... .+.+...+..|+.+-+.
T Consensus 141 --------------------------~L~~A~~~g~~~~~~v~~Ll~~----ga~~~~~d~~g~t~L~~A~~~g~~~~v~ 190 (364)
T 3ljn_A 141 --------------------------ALHWCVGLGPEYLEMIKILVQL----GASPTAKDKADETPLMRAMEFRNREALD 190 (364)
T ss_dssp --------------------------HHHHHHHSCGGGHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred --------------------------HHHHHHHcCCchHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCCHHHHH
Q ss_pred HHHHH---HHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHH
Q 004743 408 DMVKR---MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE--ALLRVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 408 ~l~~~---M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~--~Li~~~~~~g~~~~A~~l~~~ 482 (732)
.+++. .....+......-.+.|...+..|+.+ +.+.+.+.|..++..... +-|...++.|..+-+..|++.
T Consensus 191 ~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 191 LMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED----VAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHhcccccccccccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
No 263
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.32 E-value=5.8e+02 Score=27.03 Aligned_cols=200 Identities=9% Similarity=-0.050 Sum_probs=108.6
Q ss_pred cCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcccC
Q 004743 164 TNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQ-REGIKLGQYHYNVLLYLCSSAAVG 242 (732)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~-~~Gi~pd~~tyn~LL~~~~~~~~~ 242 (732)
++...|.+.+-.+..+.+.... ..-.......++..|.+.|+++...+.+..+. +.|..+.. ...++..+...-.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d-~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~- 105 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASD-LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLK- 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCS-TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHhhhccc-hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHh-
Confidence 4566777777777655443333 34445778899999999999999988887766 34543333 3344444431000
Q ss_pred CcccCCCCChhhHHHHhhhccccchhhcccCCCCCcccc---------ccccccccccccccccCChhHHHHHHHHHHHc
Q 004743 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQL---------DYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (732)
Q Consensus 243 ~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~ty---------n~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (732)
..+..+.+.-..+.... . .+.+.-+| -.|.+. +-..|++.+|..++.++...
T Consensus 106 ---~~~~~d~~~~~~~i~~l--------~--~vte~kiflE~erarl~~~La~i------~e~~g~~~eA~~iL~~l~~E 166 (445)
T 4b4t_P 106 ---SSKSLDLNTRISVIETI--------R--VVTENKIFVEVERARVTKDLVEI------KKEEGKIDEAADILCELQVE 166 (445)
T ss_dssp ---HHCTTHHHHHHHHHHCC--------S--SSSSCCCCCCHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHHHHH
T ss_pred ---cCCchhHHHHHHHHHHH--------H--HHhccchHHHHHHHHHHHHHHHH------HHHccCHHHHHHHHHHHHHH
Confidence 00111111111222100 0 11111112 122333 77789999999998888643
Q ss_pred CCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHh----CCCCCC--H
Q 004743 314 GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL----DEVPMN--E 387 (732)
Q Consensus 314 gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~----~gi~pd--~ 387 (732)
-...+...+ . +..|.. .+..|...+++.+|..++.+... ....|+ .
T Consensus 167 t~~~~~~~~----k-----------------------ve~~l~-q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 167 TYGSMEMSE----K-----------------------IQFILE-QMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HCSSSCHHH----H-----------------------HHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHhcccHHH----H-----------------------HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 111111111 0 111222 56777788888888888887642 222222 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~ 414 (732)
.-|..++..+...+++.+|.+.|.+.-
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 356667777777888888777776654
No 264
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.90 E-value=30 Score=33.48 Aligned_cols=119 Identities=14% Similarity=0.080 Sum_probs=72.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHH--hcCCHHHHHHHHHHHHHcC---------CC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA-------SLTAVGRMAM--SMGDGDMAFDMVKRMKSLG---------IN 419 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~-------ty~~LI~~~~--~~g~~~~A~~l~~~M~~~g---------~~ 419 (732)
.+...++.|+.+....+++.+...|..++.. -++.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 5566778899998888999888877776643 3355555542 5688887777776643321 11
Q ss_pred -CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHHhcCChHHHHHHHH
Q 004743 420 -PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE----------------LEALLRVSVEAGKGDRVYYLLH 481 (732)
Q Consensus 420 -pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t----------------y~~Li~~~~~~g~~~~A~~l~~ 481 (732)
.|..-++ .|...+..|+.+- .+.+.+.|..++... -.+.|...+..|..+-+..+++
T Consensus 88 ~~d~~g~t-~L~~A~~~g~~~~----v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 88 DVYYRGQT-ALHIAIERRCKHY----VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp CSSEESBC-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCCCC-HHHHHHHcCCHHH----HHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 1112233 4555667788654 445555777766543 2344555577787665555544
No 265
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.80 E-value=2.3e+02 Score=24.62 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=45.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD--GDMAFDMVKRMKSLGIN 419 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~--~~~A~~l~~~M~~~g~~ 419 (732)
+|.-|...|+.++|.+.++++..... -..+++.++..++-+.++ .+.+..++..+...|+-
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 88999999999999999999974322 235666677777766543 45678888888877653
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.51 E-value=3e+02 Score=29.11 Aligned_cols=96 Identities=14% Similarity=0.004 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHH----H
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGI--NPRLRSYGPALSVFCNNGDVDKACSVEEHMLE---HGVYPEEP----E 459 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~--~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~---~gv~pd~~----t 459 (732)
++..+-+-|.+.|+.++|.+++.++..... .--+..|-.+|..+...+++..|......... .+-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 567788899999999999999999987633 33356777889999999999999999887653 33333332 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 460 LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 460 y~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
|..++ +...+++.+|...|.+.-..
T Consensus 213 ~~gl~--~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIH--CLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHG--GGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHhChHHHHHHHHHHHhcc
Confidence 22222 24578899999999887654
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=25.82 E-value=2.2e+02 Score=24.04 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=23.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
+...|++++|..+.+.+ +.||+..|-+|-. .+.|..+++..-+.+|..+|
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34455555555554332 2455555544432 24444444444444444433
No 268
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.89 E-value=1e+02 Score=27.94 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=15.2
Q ss_pred HHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHH
Q 004743 442 CSVEEHMLEHGVYPEEPELE--ALLRVSVEAGKGDRVY 477 (732)
Q Consensus 442 ~~l~~~M~~~gv~pd~~ty~--~Li~~~~~~g~~~~A~ 477 (732)
.++.+.+.+.|..|+..... +-+...++.|+.+-+.
T Consensus 158 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~ 195 (201)
T 3hra_A 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISK 195 (201)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHH
Confidence 44455555555544432211 2233334445544433
No 269
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=24.66 E-value=6.3e+02 Score=29.05 Aligned_cols=51 Identities=8% Similarity=0.025 Sum_probs=42.7
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRM 413 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M 413 (732)
-+-..|+++-|+++-++-... .|+ -.||-.|..+|.+.|+++.|+-.++.|
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344578999999998887654 455 578999999999999999999999887
No 270
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=24.13 E-value=4.4e+02 Score=27.66 Aligned_cols=107 Identities=8% Similarity=-0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHH---HHHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 391 TAVGRMAMSMGDGD---MAFDMVKRMKSLG----INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 391 ~~LI~~~~~~g~~~---~A~~l~~~M~~~g----~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
..++...|..|+.+ +|.++|+.....+ +.||.+..--...+-- ...++..++.|.. ..+...=..+
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~~-~~~~~~l~~~y~~------s~~~~ek~~l 273 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQS-TEGWDFLYSKYQF------SLSSTEKSQI 273 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTTS-HHHHHHHHHHHHH------CCCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeCC-HHHHHHHHHHHhc------CCCHHHHHHH
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHHHHHhc
Q 004743 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS 504 (732)
Q Consensus 464 i~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~I~~~~~~ 504 (732)
+.+++...+.+...++++.......-.+.+...++.+...+
T Consensus 274 l~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~~~~~v~~n 314 (419)
T 3rjo_A 274 EFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRN 314 (419)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHHHHHHHHTS
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC
No 271
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=24.02 E-value=5.1e+02 Score=25.29 Aligned_cols=215 Identities=14% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCC
Q 004743 195 RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (732)
Q Consensus 195 n~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g 274 (732)
...|...++.|+.+....++......--..|..-.+.|..++. .|+.+-+..++ +......
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~-----------~g~~~~v~~Ll--------~~g~~~~ 85 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAG-----------YNRVRIVQLLL--------QHGADVH 85 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHH-----------TTCHHHHHHHH--------HTTCCTT
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHH-----------cCCHHHHHHHH--------HcCCCCC
Q ss_pred CCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc---ccchhhhhhccccccCCCchhhhccCCCCCh
Q 004743 275 MDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH---MKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (732)
Q Consensus 275 ~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~---ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~ 351 (732)
..|...++.|.-+ ..... .++++.+.+.|..++.. .++
T Consensus 86 ~~~~~g~t~L~~A------~~~g~-----~~iv~~Ll~~g~~~~~~~~~g~t---------------------------- 126 (351)
T 3utm_A 86 AKDKGGLVPLHNA------CSYGH-----YEVTELLLKHGACVNAMDLWQFT---------------------------- 126 (351)
T ss_dssp CCCTTCCCHHHHH------HHTTC-----HHHHHHHHHTTCCTTCCCTTCCC----------------------------
T ss_pred ccCCCCCcHHHHH------HHCCC-----HHHHHHHHHCCCCCCCCCCCCCC----------------------------
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC------------------------HHHHHHHHHHHHhcCCHH---
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN------------------------EASLTAVGRMAMSMGDGD--- 404 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd------------------------~~ty~~LI~~~~~~g~~~--- 404 (732)
.+...+..|. .++++.+.+.|..|+ ......++.+........
T Consensus 127 ------~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (351)
T 3utm_A 127 ------PLHEAASKNR----VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK 196 (351)
T ss_dssp ------HHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------HHHHHHHcCC----HHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHH
Q ss_pred ----------------------------HHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 004743 405 ----------------------------MAFDMVKRMKSLGINPRLRSY--GPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (732)
Q Consensus 405 ----------------------------~A~~l~~~M~~~g~~pd~~ty--~~lI~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (732)
.-.++++.+.+.|..++.... .+.|...++.|+. ++.+.+.+.|..
T Consensus 197 ~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~ga~ 272 (351)
T 3utm_A 197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHN----DVMEVLHKHGAK 272 (351)
T ss_dssp HTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHHTTCC
T ss_pred HHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCH----HHHHHHHHCCCC
Q ss_pred CCHHHH--HHHHHHHHhcCChHHHHHHHH
Q 004743 455 PEEPEL--EALLRVSVEAGKGDRVYYLLH 481 (732)
Q Consensus 455 pd~~ty--~~Li~~~~~~g~~~~A~~l~~ 481 (732)
++.... .+-|...+..|..+-+..|++
T Consensus 273 ~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 301 (351)
T 3utm_A 273 MNALDSLGQTALHRAALAGHLQTCRLLLS 301 (351)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHHH
No 272
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=23.27 E-value=44 Score=33.14 Aligned_cols=218 Identities=9% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH---------HHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhcccc
Q 004743 195 RVELDMCSKRGDVMGAIRLYDKA---------QREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMN 265 (732)
Q Consensus 195 n~lI~a~~k~g~~~~A~~lf~~M---------~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~ 265 (732)
.+.+...+..|+.++..++.... ...++......-.+.|...+ ..|+.+-+..++.
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa----------~~g~~~~v~~Ll~----- 80 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAA----------IHGHQLSLRNLIS----- 80 (285)
T ss_dssp --------------------------CCSEECCCCTTCSSSCCSCCHHHHHH----------HTTCHHHHHHHHH-----
T ss_pred HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHH----------HcCCHHHHHHHHH-----
Q ss_pred chhhcccCCCC-Cccc--cccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccc-hhhhhhccccccCCCchh
Q 004743 266 STELGDSRDMD-NNGQ--LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL-NSQLLDGRSNLERGPDDQ 341 (732)
Q Consensus 266 s~em~~~~g~~-d~~t--yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~-~~~li~~~~~~a~~~~~~ 341 (732)
.|.. +... ..+.+.. .+..|..+-+.-+++. |..++..... ...+..+....-..+...
T Consensus 81 -------~g~~~~~~~~~g~t~L~~------A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~t~L~~A~~~~~~~~v~~ 143 (285)
T 3d9h_A 81 -------QGWAVNIITADHVSPLHE------ACLGGHLSCVKILLKH----GAQVNGVTADWHTPLFNACVSGSWDCVNL 143 (285)
T ss_dssp -------TTCCSCEECTTCCCHHHH------HHHTTCHHHHHHHHHT----TCCSSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred -------CCCCCCCcCCCCCCHHHH------HHHCCcHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHcCHHHHHHH
Q ss_pred hhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004743 342 SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGIN 419 (732)
Q Consensus 342 m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~--~LI~~~~~~g~~~~A~~l~~~M~~~g~~ 419 (732)
+...|..++........+...++.|. .++++.+.+.|..++..... +.+...+..|+. ++++.+.+.|..
T Consensus 144 Ll~~g~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~----~~v~~Ll~~ga~ 215 (285)
T 3d9h_A 144 LLQHGASVQPESDLASPIHEAARRGH----VECVNSLIAYGGNIDHKISHLGTPLYLACENQQR----ACVKKLLESGAD 215 (285)
T ss_dssp HHHTTCCSSCSCTTSCHHHHHHHHTC----HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH----HHHHHHHHTTCC
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH----HHHHHHHHCCCC
Q ss_pred CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004743 420 PRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (732)
Q Consensus 420 pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd 456 (732)
++. ..-.+.+...++.|+. ++.+.+.+.|..++
T Consensus 216 ~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~gad~~ 249 (285)
T 3d9h_A 216 VNQGKGQDSPLHAVVRTASE----ELACLLMDFGADTQ 249 (285)
T ss_dssp TTCCBTTBCHHHHHHHTTCH----HHHHHHHHTTCCTT
T ss_pred CCCCCCCCCHHHHHHHcCCH----HHHHHHHHCCCCCC
No 273
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.23 E-value=6.8e+02 Score=26.45 Aligned_cols=198 Identities=6% Similarity=0.005 Sum_probs=117.9
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC-Cc
Q 004743 205 GDVMGAIRLYDKAQRE-----GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NN 278 (732)
Q Consensus 205 g~~~~A~~lf~~M~~~-----Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~ 278 (732)
|++.+|++-+-.+.+. ...-.......++..|. +.|+++...+.+..+ .+..|.. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~----------~~~~~~~l~e~i~~L-------skkr~qlk~a 92 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLA----------SRNKWDDLNEQLTLL-------SKKHGQLKLS 92 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHH----------HHSCHHHHHHHHHHH-------HTTTTTSHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHH----------HhccHHHHHHHHHHH-------HHHhhhhHHH
Confidence 6788888877766642 24455677888888888 667777776666422 1111111 11
Q ss_pred cccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccc-cCCCchhhhccCCCCChhhhHHH
Q 004743 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNL-ERGPDDQSRKKDWSIDNQDADEI 357 (732)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~-a~~~~~~m~~~g~~pd~~tyn~~ 357 (732)
++ ..+..+...++++. .+|..+.- .++...... ..++|-+... .-....
T Consensus 93 i~-----------------~~V~~~~~~l~~~~----~~d~~~~~--~~i~~l~~vte~kiflE~er-------arl~~~ 142 (445)
T 4b4t_P 93 IQ-----------------YMIQKVMEYLKSSK----SLDLNTRI--SVIETIRVVTENKIFVEVER-------ARVTKD 142 (445)
T ss_dssp HH-----------------HHHHHHHHHHHHHC----TTHHHHHH--HHHHCCSSSSSCCCCCCHHH-------HHHHHH
T ss_pred HH-----------------HHHHHHHHHHhcCC----chhHHHHH--HHHHHHHHHhccchHHHHHH-------HHHHHH
Confidence 00 01122223332221 12333332 444444321 2223332211 112234
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC--hhhHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLD--EVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKS----LGINPR--LRSYG 426 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--gi~pd---~~ty~~LI~~~~~~g~~~~A~~l~~~M~~----~g~~pd--~~ty~ 426 (732)
|...|-..|++.+|.+++.++... |.... ...|.-.++.|...+++..|..+++.... ....|+ ..-|.
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~ 222 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN 222 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence 778899999999999999998753 32222 34677788899999999999999988642 233343 35667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 004743 427 PALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
..+..+...+++.+|...|.+..
T Consensus 223 ~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 223 LLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Confidence 77788888999999988877764
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=23.17 E-value=2.1e+02 Score=24.05 Aligned_cols=50 Identities=10% Similarity=-0.080 Sum_probs=24.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
+...|++++|..+.+.+ +.||+..|-+|-. .+.|..+++..-+.+|..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34455555555554332 3455555554432 34455555555444544444
No 275
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=22.66 E-value=1.9e+02 Score=28.86 Aligned_cols=115 Identities=10% Similarity=0.073 Sum_probs=70.6
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCh
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDV 438 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g--~~pd~~ty~~lI~~~~~~g~~ 438 (732)
...+.|.+++|++-...-.+.. +-|...=..|+..+|-.|+++.|.+-++...+.. ..|-...|-.+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 4557788888888887766654 5577778888999999999999988887766542 22334455555442
Q ss_pred HHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHH--hcCChHHHHHHHHHHHhc
Q 004743 439 DKACSVEEHMLEHGVYP-----EEPELEALLRVSV--EAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 439 ~~A~~l~~~M~~~gv~p-----d~~ty~~Li~~~~--~~g~~~~A~~l~~~M~~~ 486 (732)
+..=.+...-+-.| ...-...|+.+.. ..|+.++|..+-.+..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 12222222222121 2223445666653 358888888777766443
No 276
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=22.61 E-value=4.1e+02 Score=32.16 Aligned_cols=114 Identities=10% Similarity=-0.002 Sum_probs=80.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCC-----------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPM-----------------------NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~p-----------------------d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (732)
..|...|++++|.+.|.+.. .|+.. -..=|.-++..+-+.+..+.+.++-..-.+.
T Consensus 850 ~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~ 928 (1139)
T 4fhn_B 850 LIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 928 (1139)
T ss_dssp HHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56777899999999997642 12211 1123677888888999999888776654433
Q ss_pred C--CCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004743 417 G--INPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (732)
Q Consensus 417 g--~~pd~--~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (732)
. -.++. ..|+.+.+++...|++++|...+-.+.....+ ......||..+|..|..++-
T Consensus 929 ~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 929 KETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHH
T ss_pred ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhh
Confidence 1 11222 25888999999999999999999888876544 45677888888877765443
No 277
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=22.28 E-value=2.5e+02 Score=27.33 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=38.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhc
Q 004743 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRS---YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEA 470 (732)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t---y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty--~~Li~~~~~~ 470 (732)
..+..+..+ +++.+.+.|..|+... +++| ...+..|+.+-+. .+.+.|..++.... .+.|...+..
T Consensus 125 ~a~~~~~~~----~~~~Ll~~g~~~n~~d~~g~TpL-~~A~~~g~~~~v~----~Ll~~gadvn~~~~~g~t~Lh~A~~~ 195 (269)
T 4b93_B 125 LACQQGHFQ----VVKCLLDSNAKPNKKDLSGNTPL-IYACSGGHHELVA----LLLQHGASINASNNKGNTALHEAVIE 195 (269)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCSCCCCTTCCCHH-HHHHHTTCGGGHH----HHHHTTCCTTCBCTTSCBHHHHHHHT
T ss_pred cccccChHH----HHHHHHHCCCCCCCCCCCCCCHH-HHHHHCCCHHHHH----HHHHCCCCCCccccCCCcHHHHHHHc
Confidence 334445544 3444455676665432 2334 4455677765443 34456665543321 2334445667
Q ss_pred CChHHHHHHHH
Q 004743 471 GKGDRVYYLLH 481 (732)
Q Consensus 471 g~~~~A~~l~~ 481 (732)
|..+-+..|++
T Consensus 196 g~~~~v~~Ll~ 206 (269)
T 4b93_B 196 KHVFVVELLLL 206 (269)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 77765555443
No 278
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=22.01 E-value=1.3e+02 Score=26.38 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=47.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL--TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFC 433 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty--~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty--~~lI~~~~ 433 (732)
.+...+..|..+ +++.+.+.|..++.... .+.+...+..|+.+- ++.+.+.|..++.... .+.+...+
T Consensus 45 ~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~ 116 (165)
T 3twr_A 45 PLHFAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV----AELLVKHGAVVNVADLWKFTPLHEAA 116 (165)
T ss_dssp HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHH----HHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence 444555677754 45555556666543321 133445566777664 4444556776654432 23455566
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEE 457 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~ 457 (732)
..|+.+- .+.+.+.|..|+.
T Consensus 117 ~~~~~~~----v~~Ll~~ga~~~~ 136 (165)
T 3twr_A 117 AKGKYEI----CKLLLQHGADPTK 136 (165)
T ss_dssp HTTCHHH----HHHHHHTTCCTTC
T ss_pred HcCCHHH----HHHHHHcCCCCcc
Confidence 7787654 4444556666543
No 279
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.55 E-value=2.2e+02 Score=25.58 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=44.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD--GDMAFDMVKRMKSLGI 418 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~--~~~A~~l~~~M~~~g~ 418 (732)
+|.-|...|++++|.+.++++..... -..+++.++..++=+.++ .+.+..++..+...|+
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 88999999999999999999964322 235666667777766433 4567788888877654
No 280
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.45 E-value=83 Score=31.09 Aligned_cols=112 Identities=13% Similarity=0.020 Sum_probs=61.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH---HHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY---GPALSV 431 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty---~~lI~~ 431 (732)
.+...+..|..+-+ +.+.+.|..++. .-++. +...+..|+.+-+..++ +.|..++.... .+.+..
T Consensus 65 ~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~ 135 (285)
T 3kea_A 65 PLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTA-LYYAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYH 135 (285)
T ss_dssp HHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHH----HHCGGGGGCSSSGGGSHHHH
T ss_pred HHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHH----hcCCCCCccCCCCCCCHHHH
Confidence 44455566775544 444445655443 22333 44455677766544444 44666654432 456666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 004743 432 FCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~l~~~ 482 (732)
.+..|+.+-+ +.+.+.|..+... .-.+.+...+..|..+-+..+++.
T Consensus 136 A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 136 AVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 7778876544 4444555443221 334455566788888777777665
No 281
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.39 E-value=2.6e+02 Score=25.87 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=69.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH---------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS---------------LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t---------------y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 422 (732)
.+...+..|..+ +++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++.
T Consensus 78 ~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~ga~~~~ 149 (232)
T 2rfa_A 78 ALHIAVINQNVN----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI----VRLLIEHGADIRA 149 (232)
T ss_dssp HHHHHHHTTCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHH----HHHHHHTTCCTTC
T ss_pred HHHHHHHcCCHH----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHH----HHHHHHCCCCCCC
Confidence 344455667754 4444455566554421 2233444556677654 4444556776654
Q ss_pred hh--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 423 RS--YGPALSVFCNNGDVDKACSVEEHMLEHGVYP---------EEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 423 ~t--y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p---------d~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
.. -.+.+...+..|+.+-+..+++.+.+.|..+ |..-.+ -+...++.|+.+-+..+++.=.
T Consensus 150 ~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 150 QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp CCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcCc
Confidence 32 2346666788899998888888888887644 222223 3445567777777766666543
No 282
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=20.85 E-value=3e+02 Score=23.15 Aligned_cols=77 Identities=22% Similarity=0.177 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004743 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (732)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~ 481 (732)
+.++|.-|-+.+...|. ....--+=+..+...|++++|..+.+.+- .||...|-+|-. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45566666666665543 22222223445778999999999887654 899999988765 47899999988888
Q ss_pred HHHhc
Q 004743 482 KLRTS 486 (732)
Q Consensus 482 ~M~~~ 486 (732)
+|..+
T Consensus 94 ~la~s 98 (116)
T 2p58_C 94 RLARS 98 (116)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 88776
No 283
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=20.70 E-value=1.2e+02 Score=27.10 Aligned_cols=112 Identities=11% Similarity=0.030 Sum_probs=58.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCC
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFCNNGD 437 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty--~~lI~~~~~~g~ 437 (732)
...++.|+++.+..+++.-...--.+|..-++. +...+..|+.+ +++.+.+.|..++.... .+.+...+..|+
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 10 FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSP-LHWACREGRSA----VVEMLIMRGARINVMNRGDDTPLHLAASHGH 84 (179)
T ss_dssp HHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhcCcccccccCCCCCCH-HHHHHHcCcHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 344677887777666654221111123333343 44556677765 44455566776664432 235555667777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHH
Q 004743 438 VDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLL 480 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty--~~Li~~~~~~g~~~~A~~l~ 480 (732)
.+ +.+.+.+.|..++.... .+.+...+..|+.+-+..++
T Consensus 85 ~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 125 (179)
T 3f6q_A 85 RD----IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125 (179)
T ss_dssp HH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HH----HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 65 44455566766554321 23444456667765544444
No 284
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=20.20 E-value=3.2e+02 Score=28.79 Aligned_cols=91 Identities=5% Similarity=-0.053 Sum_probs=47.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHH
Q 004743 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALL 464 (732)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~--gv~pd~~ty~~Li 464 (732)
-|...|...|++.+|.+++.++.+.=-+.| +..|-.-+..|...+++.++...+...... .+.++...- +.|
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-a~i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-GAL 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-HHH
Confidence 345555566666666555555554311111 334555666677777777777777655322 222333322 222
Q ss_pred HHH-----H-hcCChHHHHHHHHHH
Q 004743 465 RVS-----V-EAGKGDRVYYLLHKL 483 (732)
Q Consensus 465 ~~~-----~-~~g~~~~A~~l~~~M 483 (732)
+.| . ..+++.+|...|-+-
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHH
Confidence 222 3 567777777776554
Done!