Query 004744
Match_columns 732
No_of_seqs 859 out of 3825
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 12:10:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.3E-79 2.9E-84 702.0 70.8 607 80-731 83-727 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 4.5E-78 9.7E-83 689.5 65.4 593 95-731 65-658 (857)
3 PLN03218 maturation of RBCL 1; 100.0 8E-73 1.7E-77 631.2 71.6 547 168-732 368-917 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 5.9E-72 1.3E-76 624.2 69.7 550 128-696 364-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.1E-64 2.3E-69 565.5 53.0 476 202-729 84-562 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.4E-64 2.9E-69 564.7 51.7 477 167-660 84-563 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9.1E-39 2E-43 375.3 82.1 609 93-722 273-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-37 3.3E-42 365.0 82.2 611 94-725 240-867 (899)
9 PRK11447 cellulose synthase su 100.0 2.3E-28 5E-33 286.7 78.7 615 95-729 42-746 (1157)
10 PRK11447 cellulose synthase su 100.0 7.7E-27 1.7E-31 273.9 73.5 568 121-724 31-700 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.7E-24 3.8E-29 241.9 72.6 589 83-730 46-710 (987)
12 PRK09782 bacteriophage N4 rece 100.0 9.6E-23 2.1E-27 228.0 68.7 553 123-730 49-676 (987)
13 KOG2002 TPR-containing nuclear 100.0 2.1E-22 4.5E-27 209.8 60.5 599 96-725 145-799 (1018)
14 KOG4626 O-linked N-acetylgluco 100.0 1.7E-24 3.7E-29 213.6 41.3 389 310-713 116-508 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 7.7E-24 1.7E-28 209.1 39.5 435 278-730 51-489 (966)
16 KOG2002 TPR-containing nuclear 99.9 1.3E-20 2.8E-25 196.6 57.2 561 133-723 145-744 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 7.4E-20 1.6E-24 202.0 52.9 430 241-688 128-570 (615)
18 PRK11788 tetratricopeptide rep 99.9 2E-21 4.4E-26 203.8 37.2 297 427-730 47-353 (389)
19 TIGR00990 3a0801s09 mitochondr 99.9 3.9E-19 8.4E-24 196.3 54.4 430 172-653 129-570 (615)
20 PRK11788 tetratricopeptide rep 99.9 1E-20 2.3E-25 198.5 36.3 302 177-485 42-353 (389)
21 KOG0495 HAT repeat protein [RN 99.9 2.4E-16 5.2E-21 157.6 64.0 594 96-722 266-878 (913)
22 KOG2076 RNA polymerase III tra 99.9 3.1E-17 6.8E-22 170.6 57.7 585 121-730 142-853 (895)
23 PRK15174 Vi polysaccharide exp 99.9 1.2E-18 2.7E-23 191.4 49.3 333 123-481 47-383 (656)
24 PRK15174 Vi polysaccharide exp 99.9 5.8E-18 1.3E-22 186.1 51.1 336 171-515 43-382 (656)
25 PRK10049 pgaA outer membrane p 99.9 7.7E-18 1.7E-22 189.3 49.3 409 274-696 14-461 (765)
26 PRK10049 pgaA outer membrane p 99.9 1.2E-17 2.5E-22 187.9 48.9 405 169-584 14-456 (765)
27 PRK14574 hmsH outer membrane p 99.9 1.2E-16 2.7E-21 175.6 53.8 434 247-696 41-518 (822)
28 PRK14574 hmsH outer membrane p 99.9 6.7E-16 1.5E-20 169.8 57.6 438 175-653 39-512 (822)
29 KOG0495 HAT repeat protein [RN 99.9 5.5E-15 1.2E-19 148.0 57.4 560 132-724 265-846 (913)
30 KOG2076 RNA polymerase III tra 99.9 4E-15 8.6E-20 155.2 58.0 601 93-720 151-891 (895)
31 KOG2003 TPR repeat-containing 99.8 2.3E-16 4.9E-21 151.0 37.8 477 206-710 202-709 (840)
32 KOG4422 Uncharacterized conser 99.8 5.1E-15 1.1E-19 141.1 44.2 449 168-655 114-591 (625)
33 KOG1915 Cell cycle control pro 99.8 5.9E-13 1.3E-17 128.8 54.2 434 170-618 73-535 (677)
34 KOG2003 TPR repeat-containing 99.8 2.6E-15 5.6E-20 143.8 35.4 481 171-675 202-709 (840)
35 KOG4422 Uncharacterized conser 99.8 1.4E-13 3.1E-18 131.3 44.8 448 205-691 116-592 (625)
36 KOG1915 Cell cycle control pro 99.7 6.1E-12 1.3E-16 121.9 50.3 461 191-668 60-548 (677)
37 KOG2047 mRNA splicing factor [ 99.7 3.3E-11 7.2E-16 121.3 54.9 545 118-710 102-709 (835)
38 KOG1155 Anaphase-promoting com 99.7 1.3E-11 2.7E-16 119.7 44.8 366 270-652 159-534 (559)
39 KOG0547 Translocase of outer m 99.7 4.5E-13 9.7E-18 130.3 34.5 220 462-688 338-565 (606)
40 KOG1155 Anaphase-promoting com 99.7 1.1E-11 2.3E-16 120.2 42.9 362 309-687 163-534 (559)
41 PRK10747 putative protoheme IX 99.7 5.2E-13 1.1E-17 138.6 36.8 285 428-723 97-389 (398)
42 KOG0547 Translocase of outer m 99.7 3.5E-12 7.5E-17 124.3 37.8 220 428-653 339-565 (606)
43 KOG1173 Anaphase-promoting com 99.7 8.3E-12 1.8E-16 124.1 40.7 474 204-701 15-528 (611)
44 TIGR00540 hemY_coli hemY prote 99.7 8.9E-13 1.9E-17 137.6 36.1 290 427-723 96-398 (409)
45 KOG2047 mRNA splicing factor [ 99.6 3.2E-09 7E-14 107.3 57.6 526 170-722 102-685 (835)
46 KOG3785 Uncharacterized conser 99.6 2.4E-11 5.2E-16 113.5 39.2 491 180-710 32-536 (557)
47 KOG1173 Anaphase-promoting com 99.6 3.3E-11 7.1E-16 120.0 41.4 484 167-670 13-532 (611)
48 PRK10747 putative protoheme IX 99.6 2.9E-12 6.3E-17 133.0 36.0 291 358-688 97-389 (398)
49 PF13429 TPR_15: Tetratricopep 99.6 4.3E-15 9.3E-20 147.4 12.0 260 455-723 13-276 (280)
50 KOG4318 Bicoid mRNA stability 99.6 1.2E-11 2.7E-16 128.7 37.2 498 191-727 11-597 (1088)
51 TIGR00540 hemY_coli hemY prote 99.6 5.6E-12 1.2E-16 131.7 35.7 294 357-688 96-398 (409)
52 KOG1156 N-terminal acetyltrans 99.6 5.9E-10 1.3E-14 112.9 47.0 466 171-653 9-510 (700)
53 KOG1156 N-terminal acetyltrans 99.6 2.1E-08 4.6E-13 101.9 57.4 590 95-723 21-687 (700)
54 COG3071 HemY Uncharacterized e 99.6 2.5E-11 5.4E-16 116.1 34.2 286 428-723 97-389 (400)
55 PF13429 TPR_15: Tetratricopep 99.6 1.1E-14 2.4E-19 144.3 12.4 261 420-688 13-276 (280)
56 KOG1126 DNA-binding cell divis 99.6 1.2E-12 2.6E-17 132.9 25.9 287 220-517 334-623 (638)
57 KOG3785 Uncharacterized conser 99.6 1.8E-10 3.9E-15 107.8 37.5 453 212-698 29-497 (557)
58 COG2956 Predicted N-acetylgluc 99.6 3.5E-11 7.6E-16 111.4 32.2 309 77-408 31-346 (389)
59 COG2956 Predicted N-acetylgluc 99.6 4.2E-11 9.1E-16 110.9 32.1 286 358-653 48-346 (389)
60 KOG1126 DNA-binding cell divis 99.6 3.6E-12 7.8E-17 129.5 27.6 291 184-485 333-626 (638)
61 KOG4162 Predicted calmodulin-b 99.5 3.5E-09 7.6E-14 109.7 48.7 512 180-723 237-782 (799)
62 KOG1127 TPR repeat-containing 99.5 9.6E-10 2.1E-14 116.3 43.2 584 94-722 471-1102(1238)
63 COG3071 HemY Uncharacterized e 99.5 2.3E-10 5E-15 109.6 34.3 293 358-688 97-389 (400)
64 KOG0985 Vesicle coat protein c 99.5 1.6E-08 3.5E-13 107.0 50.6 582 95-722 523-1306(1666)
65 KOG4318 Bicoid mRNA stability 99.5 1.1E-09 2.4E-14 114.6 38.9 258 113-395 20-286 (1088)
66 PRK12370 invasion protein regu 99.5 5.4E-11 1.2E-15 129.1 29.3 236 165-409 290-535 (553)
67 KOG3617 WD40 and TPR repeat-co 99.5 4.3E-08 9.3E-13 101.8 47.6 519 117-724 756-1359(1416)
68 KOG1174 Anaphase-promoting com 99.4 1.8E-08 3.9E-13 96.7 41.1 294 391-695 207-504 (564)
69 PRK12370 invasion protein regu 99.4 5.3E-11 1.1E-15 129.2 27.9 252 95-375 275-536 (553)
70 KOG4162 Predicted calmodulin-b 99.4 3.4E-08 7.4E-13 102.5 45.7 435 236-688 319-782 (799)
71 KOG2376 Signal recognition par 99.4 1.6E-08 3.4E-13 101.7 41.8 459 177-686 19-517 (652)
72 KOG0985 Vesicle coat protein c 99.4 3.9E-07 8.4E-12 97.0 52.8 230 451-718 1105-1335(1666)
73 KOG1127 TPR repeat-containing 99.4 2.9E-08 6.2E-13 105.5 43.8 549 96-688 507-1103(1238)
74 TIGR02521 type_IV_pilW type IV 99.4 3.4E-10 7.3E-15 109.5 27.6 201 519-723 30-231 (234)
75 KOG1129 TPR repeat-containing 99.4 5.8E-11 1.2E-15 109.9 20.2 235 486-729 224-461 (478)
76 TIGR02521 type_IV_pilW type IV 99.4 2.5E-10 5.5E-15 110.4 26.3 199 170-372 31-230 (234)
77 KOG2376 Signal recognition par 99.4 1.5E-08 3.2E-13 101.9 38.3 459 212-721 19-517 (652)
78 KOG1129 TPR repeat-containing 99.4 4.4E-11 9.6E-16 110.6 18.4 233 171-409 224-458 (478)
79 KOG1174 Anaphase-promoting com 99.4 3.4E-08 7.3E-13 94.9 37.7 307 412-729 191-503 (564)
80 PF12569 NARP1: NMDA receptor- 99.4 3.3E-08 7.1E-13 103.6 41.6 128 419-548 198-333 (517)
81 PF12569 NARP1: NMDA receptor- 99.4 8.6E-08 1.9E-12 100.5 44.0 293 124-443 10-333 (517)
82 KOG1840 Kinesin light chain [C 99.3 8.3E-10 1.8E-14 113.9 26.8 236 487-722 201-477 (508)
83 KOG3616 Selective LIM binding 99.3 4.2E-08 9E-13 100.6 38.1 131 254-407 545-675 (1636)
84 PRK11189 lipoprotein NlpI; Pro 99.3 3.5E-09 7.7E-14 105.1 26.1 224 129-375 37-266 (296)
85 KOG1840 Kinesin light chain [C 99.3 2E-09 4.2E-14 111.2 24.6 236 452-687 201-477 (508)
86 PF13041 PPR_2: PPR repeat fam 99.2 2.1E-11 4.6E-16 84.2 6.4 49 273-321 1-49 (50)
87 KOG3617 WD40 and TPR repeat-co 99.2 1E-06 2.2E-11 92.0 42.4 448 173-689 829-1359(1416)
88 KOG0548 Molecular co-chaperone 99.2 8.4E-08 1.8E-12 95.8 31.9 235 453-706 227-471 (539)
89 PRK11189 lipoprotein NlpI; Pro 99.2 1.9E-08 4.2E-13 99.9 27.7 219 183-410 39-266 (296)
90 KOG4340 Uncharacterized conser 99.2 9.1E-08 2E-12 88.0 29.1 290 173-474 13-334 (459)
91 COG3063 PilF Tfp pilus assembl 99.2 2.7E-08 5.9E-13 88.5 24.4 198 172-373 37-235 (250)
92 KOG4340 Uncharacterized conser 99.2 1.9E-07 4E-12 86.0 30.0 326 122-476 14-372 (459)
93 PF13041 PPR_2: PPR repeat fam 99.2 7E-11 1.5E-15 81.5 6.2 50 238-287 1-50 (50)
94 COG3063 PilF Tfp pilus assembl 99.2 3.1E-08 6.8E-13 88.1 24.0 209 119-350 36-245 (250)
95 KOG0548 Molecular co-chaperone 99.2 2.7E-07 5.8E-12 92.3 32.7 432 126-627 10-461 (539)
96 KOG3616 Selective LIM binding 99.1 6.9E-06 1.5E-10 84.8 43.1 447 95-613 458-931 (1636)
97 KOG2053 Mitochondrial inherita 99.1 1.3E-05 2.8E-10 85.4 46.4 222 95-340 23-256 (932)
98 cd05804 StaR_like StaR_like; a 99.1 3.6E-07 7.8E-12 94.6 35.5 272 118-408 6-292 (355)
99 cd05804 StaR_like StaR_like; a 99.1 5.2E-07 1.1E-11 93.4 35.0 202 168-374 4-215 (355)
100 KOG0624 dsRNA-activated protei 99.1 2.8E-06 6E-11 80.0 33.7 88 460-549 165-252 (504)
101 KOG1914 mRNA cleavage and poly 99.1 2.9E-05 6.3E-10 78.0 43.4 151 501-653 347-500 (656)
102 KOG0624 dsRNA-activated protei 99.0 1.1E-05 2.3E-10 76.2 36.3 316 274-618 37-369 (504)
103 KOG1914 mRNA cleavage and poly 99.0 3.7E-05 7.9E-10 77.3 42.6 186 536-723 309-500 (656)
104 PRK04841 transcriptional regul 99.0 3.6E-06 7.8E-11 98.9 38.9 336 354-689 383-760 (903)
105 PRK04841 transcriptional regul 99.0 4.2E-06 9E-11 98.4 39.3 371 352-724 348-760 (903)
106 PLN02789 farnesyltranstransfer 99.0 1E-06 2.2E-11 87.3 27.7 208 179-392 46-267 (320)
107 KOG1125 TPR repeat-containing 98.9 1.6E-07 3.5E-12 94.6 21.2 89 424-514 294-382 (579)
108 PLN02789 farnesyltranstransfer 98.9 1.2E-06 2.7E-11 86.7 26.9 212 123-357 42-267 (320)
109 PF04733 Coatomer_E: Coatomer 98.9 6.3E-08 1.4E-12 94.6 16.3 254 423-694 9-268 (290)
110 PF04733 Coatomer_E: Coatomer 98.9 1.6E-07 3.4E-12 91.8 18.8 252 177-444 8-265 (290)
111 KOG1125 TPR repeat-containing 98.9 5.3E-07 1.2E-11 91.0 22.1 219 177-405 292-523 (579)
112 KOG2053 Mitochondrial inherita 98.8 0.00045 9.8E-09 74.0 48.1 226 129-376 20-257 (932)
113 COG5010 TadD Flp pilus assembl 98.8 6.9E-07 1.5E-11 81.7 18.4 169 164-337 61-229 (257)
114 KOG1070 rRNA processing protei 98.7 5.6E-06 1.2E-10 91.7 26.8 224 169-396 1457-1687(1710)
115 TIGR03302 OM_YfiO outer membra 98.7 2.6E-06 5.5E-11 82.2 21.1 185 518-724 31-232 (235)
116 KOG1070 rRNA processing protei 98.7 1E-05 2.2E-10 89.7 27.2 230 484-717 1457-1693(1710)
117 KOG1128 Uncharacterized conser 98.7 2.5E-05 5.4E-10 81.4 27.7 275 114-409 338-616 (777)
118 PF12854 PPR_1: PPR repeat 98.7 3.5E-08 7.5E-13 60.9 4.3 32 270-301 2-33 (34)
119 TIGR03302 OM_YfiO outer membra 98.7 3.6E-06 7.7E-11 81.2 20.4 187 168-374 31-232 (235)
120 KOG1128 Uncharacterized conser 98.6 1.8E-06 4E-11 89.5 18.3 217 119-373 399-615 (777)
121 COG5010 TadD Flp pilus assembl 98.6 7.2E-06 1.6E-10 75.1 19.6 161 122-303 70-230 (257)
122 PRK10370 formate-dependent nit 98.6 1E-05 2.2E-10 74.7 20.0 156 176-347 22-180 (198)
123 PRK15179 Vi polysaccharide bio 98.6 5.6E-06 1.2E-10 90.5 20.5 163 113-302 81-243 (694)
124 PRK15179 Vi polysaccharide bio 98.6 3.5E-05 7.6E-10 84.5 26.4 135 167-304 83-217 (694)
125 PRK10370 formate-dependent nit 98.5 4E-06 8.7E-11 77.3 16.4 126 183-312 52-180 (198)
126 KOG3060 Uncharacterized conser 98.5 0.00014 3E-09 66.3 24.2 188 462-653 24-219 (289)
127 PRK15359 type III secretion sy 98.5 1.1E-05 2.3E-10 70.4 16.9 91 211-303 30-120 (144)
128 PF12854 PPR_1: PPR repeat 98.5 1.9E-07 4E-12 57.6 4.1 32 690-721 2-33 (34)
129 PRK15359 type III secretion sy 98.5 6.7E-06 1.5E-10 71.7 15.4 109 170-281 24-132 (144)
130 PRK14720 transcript cleavage f 98.4 0.00013 2.8E-09 80.9 27.2 173 165-374 26-198 (906)
131 PRK14720 transcript cleavage f 98.4 7.6E-05 1.6E-09 82.6 25.3 238 204-496 30-268 (906)
132 COG4783 Putative Zn-dependent 98.4 0.00035 7.7E-09 70.0 26.6 116 251-370 317-433 (484)
133 KOG3081 Vesicle coat complex C 98.4 0.0012 2.7E-08 60.7 26.6 49 465-514 188-236 (299)
134 KOG3081 Vesicle coat complex C 98.3 0.00078 1.7E-08 62.0 25.1 236 178-430 16-256 (299)
135 COG4783 Putative Zn-dependent 98.3 5.3E-05 1.2E-09 75.7 19.2 113 181-296 317-429 (484)
136 KOG3060 Uncharacterized conser 98.3 0.0003 6.4E-09 64.2 21.9 199 497-702 24-232 (289)
137 TIGR02552 LcrH_SycD type III s 98.3 4.2E-05 9.2E-10 66.3 15.4 101 591-695 18-118 (135)
138 TIGR02552 LcrH_SycD type III s 98.3 4.2E-05 9.2E-10 66.3 15.3 101 167-269 14-114 (135)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.7E-05 1.2E-09 76.5 15.9 131 168-304 167-297 (395)
140 PF09976 TPR_21: Tetratricopep 98.2 7E-05 1.5E-09 65.6 14.4 118 602-721 23-144 (145)
141 PF09976 TPR_21: Tetratricopep 98.1 0.00014 3.1E-09 63.7 15.7 125 558-686 15-144 (145)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 9.8E-05 2.1E-09 74.8 16.1 120 595-721 174-294 (395)
143 KOG2041 WD40 repeat protein [G 98.1 0.013 2.9E-07 61.2 29.8 307 323-676 747-1073(1189)
144 KOG0550 Molecular chaperone (D 98.0 0.00092 2E-08 65.4 19.1 257 422-688 56-349 (486)
145 KOG0553 TPR repeat-containing 98.0 6.2E-05 1.4E-09 70.5 10.7 100 597-701 88-188 (304)
146 KOG2041 WD40 repeat protein [G 98.0 0.029 6.3E-07 58.8 30.4 353 307-711 689-1073(1189)
147 PRK15363 pathogenicity island 98.0 0.00047 1E-08 59.1 15.1 93 594-688 39-131 (157)
148 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.027 5.9E-07 56.0 38.6 146 520-670 397-545 (660)
149 TIGR00756 PPR pentatricopeptid 97.9 1.5E-05 3.3E-10 50.0 4.1 33 277-309 2-34 (35)
150 TIGR00756 PPR pentatricopeptid 97.9 2.1E-05 4.5E-10 49.3 4.4 33 697-729 2-34 (35)
151 KOG0550 Molecular chaperone (D 97.9 0.012 2.6E-07 57.8 24.4 276 175-479 54-350 (486)
152 COG3898 Uncharacterized membra 97.9 0.032 6.8E-07 54.6 30.8 253 462-730 132-398 (531)
153 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00031 6.7E-09 59.2 12.5 95 592-688 4-104 (119)
154 PRK15363 pathogenicity island 97.8 0.00072 1.6E-08 58.0 13.9 96 172-269 37-132 (157)
155 COG4700 Uncharacterized protei 97.8 0.0047 1E-07 53.6 18.6 130 552-685 86-218 (251)
156 cd00189 TPR Tetratricopeptide 97.8 0.00032 7E-09 56.0 11.7 91 628-722 3-95 (100)
157 KOG0553 TPR repeat-containing 97.8 0.00026 5.6E-09 66.5 12.0 128 563-695 89-221 (304)
158 cd00189 TPR Tetratricopeptide 97.8 0.00031 6.8E-09 56.1 11.5 94 173-268 3-96 (100)
159 PF14938 SNAP: Soluble NSF att 97.8 0.0029 6.3E-08 62.5 20.2 166 177-373 42-224 (282)
160 PF12895 Apc3: Anaphase-promot 97.8 5E-05 1.1E-09 59.2 6.1 78 638-720 2-83 (84)
161 PF14938 SNAP: Soluble NSF att 97.8 0.00037 8.1E-09 68.8 13.1 210 119-372 36-264 (282)
162 PF13812 PPR_3: Pentatricopept 97.8 4.1E-05 8.9E-10 47.6 4.1 32 277-308 3-34 (34)
163 PF13812 PPR_3: Pentatricopept 97.7 5.6E-05 1.2E-09 47.0 4.5 33 696-728 2-34 (34)
164 KOG1130 Predicted G-alpha GTPa 97.7 0.00034 7.3E-09 68.1 11.3 133 592-724 197-344 (639)
165 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00083 1.8E-08 56.5 12.8 91 629-723 6-104 (119)
166 PF07079 DUF1347: Protein of u 97.7 0.066 1.4E-06 53.6 46.6 71 286-356 90-178 (549)
167 PF05843 Suf: Suppressor of fo 97.7 0.00077 1.7E-08 66.2 14.1 129 171-303 2-135 (280)
168 PRK10153 DNA-binding transcrip 97.7 0.0025 5.5E-08 67.9 18.8 73 623-699 418-490 (517)
169 PRK02603 photosystem I assembl 97.7 0.0031 6.7E-08 57.1 16.7 113 592-710 37-166 (172)
170 PLN03088 SGT1, suppressor of 97.7 0.0011 2.4E-08 67.7 14.9 92 177-270 9-100 (356)
171 PRK10153 DNA-binding transcrip 97.6 0.0033 7.2E-08 67.1 18.7 134 586-723 333-481 (517)
172 PRK02603 photosystem I assembl 97.6 0.0021 4.6E-08 58.2 15.1 132 168-325 33-166 (172)
173 PF12895 Apc3: Anaphase-promot 97.6 0.00011 2.4E-09 57.2 5.7 81 183-265 2-83 (84)
174 PLN03088 SGT1, suppressor of 97.6 0.0016 3.5E-08 66.4 15.4 91 599-694 11-102 (356)
175 PF10037 MRP-S27: Mitochondria 97.6 0.0014 3E-08 66.9 14.6 120 237-356 63-184 (429)
176 COG4235 Cytochrome c biogenesi 97.6 0.0021 4.5E-08 61.0 14.6 113 155-269 141-256 (287)
177 PF07079 DUF1347: Protein of u 97.6 0.096 2.1E-06 52.5 48.7 145 127-287 15-179 (549)
178 KOG2280 Vacuolar assembly/sort 97.6 0.16 3.4E-06 54.3 30.9 341 339-719 426-794 (829)
179 PRK10866 outer membrane biogen 97.6 0.016 3.4E-07 55.5 20.4 83 117-214 31-113 (243)
180 PF01535 PPR: PPR repeat; Int 97.6 8.5E-05 1.8E-09 44.9 3.3 28 277-304 2-29 (31)
181 PF10037 MRP-S27: Mitochondria 97.6 0.0012 2.6E-08 67.3 13.1 124 515-638 61-186 (429)
182 CHL00033 ycf3 photosystem I as 97.6 0.0015 3.2E-08 59.0 12.6 93 625-719 35-137 (168)
183 PF05843 Suf: Suppressor of fo 97.6 0.0024 5.1E-08 62.8 14.9 130 521-653 2-135 (280)
184 CHL00033 ycf3 photosystem I as 97.5 0.0033 7.2E-08 56.7 14.4 81 170-251 35-117 (168)
185 KOG2796 Uncharacterized conser 97.5 0.0065 1.4E-07 55.8 15.4 132 242-374 179-315 (366)
186 KOG1130 Predicted G-alpha GTPa 97.5 0.0019 4.1E-08 63.1 12.6 131 488-618 198-343 (639)
187 PF01535 PPR: PPR repeat; Int 97.4 0.00017 3.6E-09 43.6 3.4 29 697-725 2-30 (31)
188 PRK10866 outer membrane biogen 97.4 0.038 8.2E-07 52.9 21.0 55 460-514 42-98 (243)
189 COG4700 Uncharacterized protei 97.4 0.07 1.5E-06 46.7 20.7 124 588-715 87-213 (251)
190 PF13414 TPR_11: TPR repeat; P 97.4 0.00079 1.7E-08 50.1 7.5 62 660-723 3-66 (69)
191 PF13432 TPR_16: Tetratricopep 97.4 0.00077 1.7E-08 49.4 7.3 58 176-234 3-60 (65)
192 PF12688 TPR_5: Tetratrico pep 97.4 0.011 2.3E-07 49.1 14.5 106 176-286 7-117 (120)
193 PF13432 TPR_16: Tetratricopep 97.4 0.00064 1.4E-08 49.8 6.5 53 668-722 5-58 (65)
194 PF13414 TPR_11: TPR repeat; P 97.3 0.00097 2.1E-08 49.6 7.3 63 624-688 2-66 (69)
195 COG4235 Cytochrome c biogenesi 97.3 0.013 2.7E-07 55.8 16.0 105 197-304 149-256 (287)
196 PF08579 RPM2: Mitochondrial r 97.3 0.0056 1.2E-07 48.7 11.0 72 214-285 34-114 (120)
197 KOG1538 Uncharacterized conser 97.3 0.056 1.2E-06 56.3 21.0 36 262-300 622-657 (1081)
198 PF08579 RPM2: Mitochondrial r 97.3 0.0043 9.3E-08 49.3 10.3 81 172-252 27-116 (120)
199 PRK10803 tol-pal system protei 97.3 0.0042 9.1E-08 59.8 12.3 86 601-688 154-245 (263)
200 PF13525 YfiO: Outer membrane 97.2 0.063 1.4E-06 50.0 18.9 68 119-201 6-73 (203)
201 PF14559 TPR_19: Tetratricopep 97.2 0.0015 3.2E-08 48.4 6.5 48 183-231 4-51 (68)
202 PF12688 TPR_5: Tetratrico pep 97.2 0.019 4.1E-07 47.6 13.4 90 596-687 7-102 (120)
203 PF14559 TPR_19: Tetratricopep 97.1 0.0013 2.9E-08 48.7 6.1 55 637-695 3-58 (68)
204 KOG2796 Uncharacterized conser 97.1 0.23 5E-06 46.1 26.0 155 535-699 164-323 (366)
205 PF13525 YfiO: Outer membrane 97.0 0.079 1.7E-06 49.3 17.6 56 459-514 14-71 (203)
206 PF06239 ECSIT: Evolutionarily 96.9 0.023 5.1E-07 51.3 12.9 35 396-430 119-153 (228)
207 KOG1538 Uncharacterized conser 96.9 0.05 1.1E-06 56.6 16.7 20 242-261 558-577 (1081)
208 PRK15331 chaperone protein Sic 96.9 0.061 1.3E-06 46.6 14.7 93 175-269 42-134 (165)
209 PF13281 DUF4071: Domain of un 96.9 0.15 3.3E-06 51.2 19.7 163 524-688 145-333 (374)
210 COG0457 NrfG FOG: TPR repeat [ 96.9 0.41 9E-06 45.6 30.7 221 464-688 37-264 (291)
211 PRK10803 tol-pal system protei 96.9 0.021 4.5E-07 55.1 13.4 83 636-722 154-244 (263)
212 KOG2114 Vacuolar assembly/sort 96.9 0.46 1E-05 51.6 23.8 232 117-372 282-517 (933)
213 PF06239 ECSIT: Evolutionarily 96.9 0.02 4.4E-07 51.7 11.7 103 274-395 46-153 (228)
214 PF13424 TPR_12: Tetratricopep 96.8 0.0058 1.3E-07 46.7 7.2 63 661-723 6-74 (78)
215 PF13371 TPR_9: Tetratricopept 96.8 0.005 1.1E-07 46.3 6.5 59 633-695 3-62 (73)
216 COG3898 Uncharacterized membra 96.7 0.69 1.5E-05 45.7 33.4 284 393-693 97-396 (531)
217 PF03704 BTAD: Bacterial trans 96.7 0.054 1.2E-06 47.4 13.8 55 630-686 67-122 (146)
218 PF13371 TPR_9: Tetratricopept 96.6 0.012 2.6E-07 44.2 7.7 54 599-653 4-57 (73)
219 PF04840 Vps16_C: Vps16, C-ter 96.6 0.89 1.9E-05 45.4 29.7 22 278-299 3-24 (319)
220 PRK15331 chaperone protein Sic 96.6 0.07 1.5E-06 46.3 12.8 87 600-688 47-133 (165)
221 PF04840 Vps16_C: Vps16, C-ter 96.6 0.91 2E-05 45.3 27.8 104 420-543 182-285 (319)
222 KOG0543 FKBP-type peptidyl-pro 96.6 0.054 1.2E-06 53.7 13.6 95 626-723 258-354 (397)
223 COG5107 RNA14 Pre-mRNA 3'-end 96.5 1.1 2.3E-05 45.3 40.5 465 193-705 31-545 (660)
224 PF13424 TPR_12: Tetratricopep 96.5 0.01 2.2E-07 45.3 6.8 69 118-198 5-74 (78)
225 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.032 7E-07 56.6 11.9 65 587-653 72-140 (453)
226 KOG2610 Uncharacterized conser 96.5 0.06 1.3E-06 51.6 12.8 115 568-685 116-234 (491)
227 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.015 3.1E-07 59.0 9.1 99 623-727 73-177 (453)
228 KOG1585 Protein required for f 96.5 0.22 4.7E-06 45.8 15.4 35 112-146 25-59 (308)
229 PF13281 DUF4071: Domain of un 96.4 0.94 2E-05 45.7 21.2 167 486-654 142-334 (374)
230 KOG1941 Acetylcholine receptor 96.4 0.12 2.6E-06 50.2 14.1 47 460-506 16-64 (518)
231 COG0457 NrfG FOG: TPR repeat [ 96.3 1 2.2E-05 42.7 33.1 221 429-653 37-264 (291)
232 KOG1258 mRNA processing protei 96.2 2.2 4.7E-05 45.1 36.8 410 170-603 45-488 (577)
233 KOG4555 TPR repeat-containing 96.1 0.1 2.2E-06 42.6 10.5 92 599-691 52-146 (175)
234 KOG1258 mRNA processing protei 96.1 2.4 5.1E-05 44.8 37.5 115 256-373 61-179 (577)
235 PRK11906 transcriptional regul 96.1 0.45 9.8E-06 48.7 17.2 145 536-686 274-433 (458)
236 KOG2280 Vacuolar assembly/sort 96.0 2.8 6.2E-05 45.3 33.4 343 304-686 426-796 (829)
237 KOG2114 Vacuolar assembly/sort 96.0 3.1 6.7E-05 45.6 26.8 148 245-405 339-488 (933)
238 KOG0543 FKBP-type peptidyl-pro 96.0 0.17 3.6E-06 50.4 13.5 23 176-198 214-236 (397)
239 PF03704 BTAD: Bacterial trans 96.0 0.076 1.6E-06 46.5 10.5 70 172-242 64-138 (146)
240 COG1729 Uncharacterized protei 96.0 0.11 2.4E-06 49.0 11.5 95 627-723 144-243 (262)
241 COG4785 NlpI Lipoprotein NlpI, 95.9 1.3 2.8E-05 40.2 17.3 63 555-618 99-161 (297)
242 PRK11906 transcriptional regul 95.9 1 2.2E-05 46.3 18.7 148 500-652 273-434 (458)
243 PF10300 DUF3808: Protein of u 95.8 0.59 1.3E-05 49.8 18.0 26 488-513 191-216 (468)
244 KOG1920 IkappaB kinase complex 95.8 2.8 6.1E-05 47.8 23.1 139 453-615 911-1051(1265)
245 KOG4555 TPR repeat-containing 95.8 0.21 4.5E-06 40.9 10.7 93 177-270 50-145 (175)
246 COG4105 ComL DNA uptake lipopr 95.8 1.7 3.8E-05 40.8 21.1 180 88-303 40-232 (254)
247 COG3118 Thioredoxin domain-con 95.7 1.7 3.6E-05 41.7 17.9 141 250-394 144-286 (304)
248 PF13428 TPR_14: Tetratricopep 95.7 0.04 8.7E-07 36.3 5.5 41 171-212 2-42 (44)
249 PF04184 ST7: ST7 protein; In 95.6 1.3 2.8E-05 45.6 18.2 166 173-352 171-338 (539)
250 COG3118 Thioredoxin domain-con 95.6 1 2.3E-05 43.0 16.4 147 177-328 141-290 (304)
251 PF12921 ATP13: Mitochondrial 95.6 0.22 4.7E-06 41.8 10.9 98 589-706 1-99 (126)
252 KOG1585 Protein required for f 95.3 2.4 5.3E-05 39.2 18.0 55 558-613 193-250 (308)
253 KOG1941 Acetylcholine receptor 95.2 2.6 5.6E-05 41.4 17.7 229 425-653 16-274 (518)
254 PF13428 TPR_14: Tetratricopep 95.2 0.048 1.1E-06 35.9 4.6 39 662-702 3-42 (44)
255 COG4105 ComL DNA uptake lipopr 95.2 2.9 6.3E-05 39.4 21.5 54 461-514 45-100 (254)
256 PF10300 DUF3808: Protein of u 95.2 2.3 5E-05 45.3 19.6 154 97-269 173-334 (468)
257 COG1729 Uncharacterized protei 95.2 0.5 1.1E-05 44.7 12.8 99 120-234 144-244 (262)
258 KOG1920 IkappaB kinase complex 95.1 4.6 9.9E-05 46.3 21.6 157 498-685 893-1051(1265)
259 KOG2610 Uncharacterized conser 95.0 0.64 1.4E-05 44.9 13.0 117 182-300 115-234 (491)
260 PF13512 TPR_18: Tetratricopep 95.0 1 2.3E-05 38.2 13.0 54 600-653 20-75 (142)
261 smart00299 CLH Clathrin heavy 94.9 2.1 4.5E-05 37.0 15.6 41 561-602 13-53 (140)
262 smart00299 CLH Clathrin heavy 94.9 2.3 4.9E-05 36.7 15.7 42 175-217 12-53 (140)
263 COG4785 NlpI Lipoprotein NlpI, 94.8 3 6.5E-05 37.9 16.9 160 166-338 95-265 (297)
264 PF04053 Coatomer_WDAD: Coatom 94.8 0.71 1.5E-05 48.4 14.1 157 180-370 271-427 (443)
265 PF13431 TPR_17: Tetratricopep 94.8 0.032 7E-07 34.2 2.7 31 683-715 2-33 (34)
266 PF09205 DUF1955: Domain of un 94.7 1.5 3.2E-05 36.3 12.4 64 662-726 88-151 (161)
267 PF04053 Coatomer_WDAD: Coatom 94.7 0.72 1.6E-05 48.3 13.9 153 287-474 273-426 (443)
268 PF04184 ST7: ST7 protein; In 94.6 3 6.6E-05 43.0 17.4 56 561-616 265-321 (539)
269 COG2909 MalT ATP-dependent tra 94.6 9.4 0.0002 42.5 25.8 52 567-618 470-525 (894)
270 PF10345 Cohesin_load: Cohesin 94.5 10 0.00022 42.3 38.5 191 99-302 39-252 (608)
271 KOG4648 Uncharacterized conser 94.0 0.6 1.3E-05 45.1 10.4 116 145-269 79-194 (536)
272 PF12921 ATP13: Mitochondrial 93.9 1 2.2E-05 37.8 10.7 48 621-668 48-96 (126)
273 COG4649 Uncharacterized protei 93.7 4.5 9.7E-05 35.4 14.2 128 566-693 69-200 (221)
274 COG4649 Uncharacterized protei 93.6 4.6 0.0001 35.3 14.0 124 180-303 68-195 (221)
275 PF08631 SPO22: Meiosis protei 93.6 8 0.00017 38.1 25.1 62 487-549 86-150 (278)
276 KOG3941 Intermediate in Toll s 93.4 1 2.2E-05 42.4 10.5 104 587-710 64-173 (406)
277 PF09205 DUF1955: Domain of un 93.1 4.5 9.7E-05 33.6 15.5 140 180-341 12-151 (161)
278 PF00515 TPR_1: Tetratricopept 93.1 0.22 4.8E-06 30.4 4.2 27 662-688 3-29 (34)
279 PF13176 TPR_7: Tetratricopept 93.0 0.21 4.7E-06 31.0 4.1 26 697-722 1-26 (36)
280 PF13170 DUF4003: Protein of u 93.0 10 0.00022 37.5 19.5 129 291-421 78-223 (297)
281 COG2976 Uncharacterized protei 92.9 6.7 0.00015 35.2 14.3 53 634-688 135-187 (207)
282 PF13512 TPR_18: Tetratricopep 92.6 4.6 0.0001 34.4 12.6 57 213-270 18-77 (142)
283 PF13170 DUF4003: Protein of u 92.6 12 0.00025 37.1 20.6 127 539-667 81-224 (297)
284 COG3629 DnrI DNA-binding trans 92.3 1.6 3.6E-05 42.0 10.8 76 627-704 155-236 (280)
285 PF10602 RPN7: 26S proteasome 92.2 2 4.3E-05 38.8 10.9 61 627-687 38-100 (177)
286 PF02259 FAT: FAT domain; Int 92.2 15 0.00033 37.6 23.6 65 554-618 145-212 (352)
287 PF07719 TPR_2: Tetratricopept 92.1 0.34 7.4E-06 29.4 4.2 26 663-688 4-29 (34)
288 PF08631 SPO22: Meiosis protei 92.1 13 0.00028 36.6 27.0 163 557-722 86-273 (278)
289 PF04097 Nic96: Nup93/Nic96; 91.9 24 0.00052 39.2 24.0 64 274-339 111-181 (613)
290 PF13431 TPR_17: Tetratricopep 91.9 0.26 5.6E-06 30.2 3.3 31 194-225 3-33 (34)
291 KOG1550 Extracellular protein 91.8 23 0.0005 38.9 28.8 48 465-515 343-394 (552)
292 KOG3941 Intermediate in Toll s 91.7 1.3 2.9E-05 41.7 9.1 103 274-395 66-173 (406)
293 PF13176 TPR_7: Tetratricopept 91.7 0.41 8.8E-06 29.8 4.1 27 662-688 1-27 (36)
294 PF04097 Nic96: Nup93/Nic96; 91.6 26 0.00056 39.0 25.6 63 313-376 114-183 (613)
295 COG3629 DnrI DNA-binding trans 91.6 2.1 4.5E-05 41.3 10.6 74 557-631 155-233 (280)
296 KOG1550 Extracellular protein 91.5 25 0.00054 38.6 27.3 178 256-445 228-427 (552)
297 PF06552 TOM20_plant: Plant sp 91.1 3.4 7.5E-05 36.5 10.4 41 676-724 96-136 (186)
298 PF07719 TPR_2: Tetratricopept 91.1 0.37 8.1E-06 29.2 3.5 32 696-729 2-33 (34)
299 PF10602 RPN7: 26S proteasome 91.0 3.1 6.8E-05 37.5 10.7 95 591-687 37-140 (177)
300 KOG2396 HAT (Half-A-TPR) repea 91.0 22 0.00048 37.0 39.6 100 587-688 456-558 (568)
301 COG2909 MalT ATP-dependent tra 91.0 31 0.00068 38.7 27.2 226 460-685 425-684 (894)
302 KOG4648 Uncharacterized conser 90.8 0.76 1.6E-05 44.5 6.7 94 597-695 104-198 (536)
303 PF09613 HrpB1_HrpK: Bacterial 90.7 11 0.00023 32.9 13.9 53 250-304 20-73 (160)
304 PF00515 TPR_1: Tetratricopept 90.6 0.61 1.3E-05 28.3 4.2 29 171-199 2-30 (34)
305 KOG0890 Protein kinase of the 90.6 57 0.0012 41.1 25.8 314 385-724 1388-1731(2382)
306 PF07035 Mic1: Colon cancer-as 90.5 12 0.00026 33.1 15.0 101 296-406 15-115 (167)
307 KOG4234 TPR repeat-containing 89.4 5.1 0.00011 36.0 10.1 95 597-695 102-201 (271)
308 KOG0276 Vesicle coat complex C 88.9 3.9 8.5E-05 43.1 10.5 45 287-337 649-693 (794)
309 PF09613 HrpB1_HrpK: Bacterial 88.7 16 0.00034 32.0 13.8 52 217-269 22-73 (160)
310 PF00637 Clathrin: Region in C 88.6 0.033 7.3E-07 48.5 -3.8 51 214-264 16-66 (143)
311 KOG1586 Protein required for f 88.4 21 0.00046 33.1 20.5 22 389-410 163-184 (288)
312 PRK11619 lytic murein transgly 88.3 48 0.001 37.1 37.9 450 55-558 33-514 (644)
313 KOG4234 TPR repeat-containing 88.2 13 0.00028 33.6 11.7 98 124-235 101-198 (271)
314 PF13181 TPR_8: Tetratricopept 87.8 0.82 1.8E-05 27.7 3.3 27 662-688 3-29 (34)
315 KOG2396 HAT (Half-A-TPR) repea 87.5 39 0.00085 35.3 41.7 99 622-723 456-558 (568)
316 PF07035 Mic1: Colon cancer-as 87.2 21 0.00045 31.7 16.2 100 192-301 16-115 (167)
317 COG1747 Uncharacterized N-term 87.0 43 0.00093 35.1 24.7 100 164-268 60-159 (711)
318 KOG1464 COP9 signalosome, subu 86.8 29 0.00062 32.9 18.5 208 445-652 21-258 (440)
319 KOG2066 Vacuolar assembly/sort 86.8 55 0.0012 36.2 28.3 47 242-292 394-440 (846)
320 KOG2066 Vacuolar assembly/sort 86.7 56 0.0012 36.2 27.4 102 247-357 363-467 (846)
321 PF10345 Cohesin_load: Cohesin 86.5 60 0.0013 36.3 44.0 163 243-406 62-251 (608)
322 KOG0276 Vesicle coat complex C 86.5 9.8 0.00021 40.3 11.6 133 206-371 615-747 (794)
323 PRK09687 putative lyase; Provi 86.4 35 0.00077 33.5 28.0 17 309-325 67-83 (280)
324 COG0790 FOG: TPR repeat, SEL1 86.2 37 0.00081 33.6 23.6 150 497-655 53-221 (292)
325 PF13374 TPR_10: Tetratricopep 86.0 1.8 3.9E-05 27.6 4.4 28 696-723 3-30 (42)
326 COG2976 Uncharacterized protei 86.0 26 0.00056 31.7 15.0 88 633-725 97-189 (207)
327 COG3947 Response regulator con 85.8 35 0.00076 32.9 16.5 66 663-730 282-353 (361)
328 PF11207 DUF2989: Protein of u 85.4 8.3 0.00018 35.0 9.4 78 636-715 118-198 (203)
329 PF09986 DUF2225: Uncharacteri 85.4 10 0.00022 35.4 10.5 28 697-724 167-194 (214)
330 PF02259 FAT: FAT domain; Int 85.3 47 0.001 33.9 24.7 65 449-513 145-212 (352)
331 KOG4570 Uncharacterized conser 85.2 15 0.00032 35.7 11.2 48 570-617 115-162 (418)
332 PRK09687 putative lyase; Provi 84.7 43 0.00092 32.9 29.5 232 449-705 36-277 (280)
333 KOG2063 Vacuolar assembly/sort 84.6 63 0.0014 37.0 17.6 39 284-322 600-638 (877)
334 KOG2471 TPR repeat-containing 84.3 21 0.00045 37.0 12.4 106 600-707 250-381 (696)
335 cd00923 Cyt_c_Oxidase_Va Cytoc 84.0 7.9 0.00017 30.2 7.3 60 642-702 24-83 (103)
336 COG0790 FOG: TPR repeat, SEL1 83.9 47 0.001 32.9 23.2 152 461-621 52-222 (292)
337 PF13181 TPR_8: Tetratricopept 83.6 2.9 6.4E-05 25.2 4.3 28 696-723 2-29 (34)
338 KOG1586 Protein required for f 83.6 38 0.00083 31.6 21.3 24 319-342 163-186 (288)
339 PRK11619 lytic murein transgly 83.2 84 0.0018 35.2 36.9 95 158-258 87-181 (644)
340 PF13374 TPR_10: Tetratricopep 83.0 3 6.5E-05 26.5 4.4 28 661-688 3-30 (42)
341 PF02284 COX5A: Cytochrome c o 83.0 7.5 0.00016 30.7 6.9 60 643-703 28-87 (108)
342 TIGR02561 HrpB1_HrpK type III 83.0 29 0.00064 29.8 12.2 53 130-200 22-74 (153)
343 PF11207 DUF2989: Protein of u 82.6 13 0.00028 33.8 9.4 21 659-679 177-197 (203)
344 COG4455 ImpE Protein of avirul 82.3 11 0.00023 34.6 8.6 74 592-668 3-80 (273)
345 COG3947 Response regulator con 82.0 51 0.0011 31.9 16.2 56 560-616 284-339 (361)
346 KOG4507 Uncharacterized conser 82.0 7.9 0.00017 40.8 8.7 74 176-251 648-721 (886)
347 KOG4570 Uncharacterized conser 81.6 16 0.00036 35.4 10.1 96 274-373 63-163 (418)
348 KOG1308 Hsp70-interacting prot 81.3 0.81 1.8E-05 44.5 1.5 119 601-724 125-244 (377)
349 PF06552 TOM20_plant: Plant sp 80.5 10 0.00023 33.6 7.8 117 100-235 10-137 (186)
350 PF08424 NRDE-2: NRDE-2, neces 79.5 73 0.0016 32.1 18.4 77 574-652 50-129 (321)
351 KOG4507 Uncharacterized conser 79.4 6.7 0.00015 41.2 7.3 127 573-703 591-718 (886)
352 PF07575 Nucleopor_Nup85: Nup8 79.1 1.1E+02 0.0024 33.9 18.7 28 114-142 145-172 (566)
353 PF13174 TPR_6: Tetratricopept 78.4 2.4 5.2E-05 25.3 2.5 23 700-722 5-27 (33)
354 KOG2063 Vacuolar assembly/sort 78.1 1.4E+02 0.003 34.4 23.0 61 173-233 310-374 (877)
355 PF13174 TPR_6: Tetratricopept 77.8 3.5 7.5E-05 24.5 3.2 24 665-688 5-28 (33)
356 PF07721 TPR_4: Tetratricopept 77.6 3.4 7.3E-05 23.3 2.8 21 699-719 5-25 (26)
357 PF04910 Tcf25: Transcriptiona 77.3 91 0.002 32.0 17.6 117 117-233 39-167 (360)
358 PF07721 TPR_4: Tetratricopept 77.1 3.9 8.3E-05 23.1 2.9 22 173-194 4-25 (26)
359 KOG4642 Chaperone-dependent E3 77.0 47 0.001 31.2 11.0 118 565-686 20-143 (284)
360 KOG3364 Membrane protein invol 75.7 28 0.00061 29.3 8.5 71 622-695 29-104 (149)
361 TIGR03504 FimV_Cterm FimV C-te 75.7 5.6 0.00012 26.0 3.7 25 700-724 4-28 (44)
362 TIGR02561 HrpB1_HrpK type III 75.6 52 0.0011 28.4 12.0 51 252-304 22-73 (153)
363 COG1747 Uncharacterized N-term 75.6 1.1E+02 0.0024 32.2 26.0 163 484-653 65-233 (711)
364 KOG2471 TPR repeat-containing 74.8 52 0.0011 34.3 11.8 43 627-671 338-380 (696)
365 smart00028 TPR Tetratricopepti 74.7 6.7 0.00015 22.4 4.0 25 698-722 4-28 (34)
366 PF07163 Pex26: Pex26 protein; 74.5 44 0.00096 32.1 10.6 88 526-613 89-181 (309)
367 smart00028 TPR Tetratricopepti 73.5 6.8 0.00015 22.4 3.8 27 662-688 3-29 (34)
368 PF04190 DUF410: Protein of un 73.5 92 0.002 30.2 18.9 16 130-145 2-17 (260)
369 PF00637 Clathrin: Region in C 72.5 1.5 3.3E-05 38.0 0.7 84 246-336 13-96 (143)
370 KOG1308 Hsp70-interacting prot 72.4 5 0.00011 39.3 4.1 120 565-689 124-244 (377)
371 KOG2297 Predicted translation 72.3 1E+02 0.0022 30.1 20.7 72 460-540 265-341 (412)
372 TIGR03504 FimV_Cterm FimV C-te 71.1 9.3 0.0002 25.0 3.9 23 281-303 5-27 (44)
373 PF10579 Rapsyn_N: Rapsyn N-te 70.9 12 0.00026 28.1 4.8 48 672-719 18-67 (80)
374 cd00923 Cyt_c_Oxidase_Va Cytoc 69.5 37 0.00081 26.7 7.3 49 570-618 22-70 (103)
375 KOG2908 26S proteasome regulat 69.3 55 0.0012 32.4 10.2 90 596-688 81-182 (380)
376 PRK15180 Vi polysaccharide bio 69.2 1.5E+02 0.0033 30.9 30.4 118 253-374 302-420 (831)
377 TIGR02508 type_III_yscG type I 69.1 44 0.00096 26.4 7.7 78 606-690 21-98 (115)
378 PF07575 Nucleopor_Nup85: Nup8 68.8 1.9E+02 0.0042 32.0 19.7 29 168-197 147-175 (566)
379 PF14853 Fis1_TPR_C: Fis1 C-te 67.7 24 0.00052 24.2 5.5 31 665-697 6-36 (53)
380 KOG4642 Chaperone-dependent E3 67.2 1.1E+02 0.0025 28.7 11.2 84 129-231 21-104 (284)
381 KOG0376 Serine-threonine phosp 66.8 7.7 0.00017 40.0 4.3 104 597-706 11-116 (476)
382 PRK10941 hypothetical protein; 66.7 80 0.0017 30.7 11.0 76 628-705 184-261 (269)
383 KOG0292 Vesicle coat complex C 66.2 27 0.00058 39.0 8.2 36 311-346 1085-1120(1202)
384 TIGR02508 type_III_yscG type I 65.6 67 0.0014 25.5 8.1 48 286-339 50-97 (115)
385 PF09986 DUF2225: Uncharacteri 65.6 1E+02 0.0022 28.9 11.2 48 642-689 142-194 (214)
386 COG5187 RPN7 26S proteasome re 65.4 1.4E+02 0.003 29.0 12.5 166 262-429 60-241 (412)
387 PF02284 COX5A: Cytochrome c o 65.0 70 0.0015 25.5 9.0 46 573-618 28-73 (108)
388 PF08311 Mad3_BUB1_I: Mad3/BUB 64.3 62 0.0014 27.2 8.7 45 677-721 80-125 (126)
389 PF06957 COPI_C: Coatomer (COP 64.3 1.9E+02 0.0041 30.2 14.1 23 123-145 123-145 (422)
390 KOG0376 Serine-threonine phosp 63.9 14 0.00031 38.1 5.5 106 562-673 11-118 (476)
391 COG4455 ImpE Protein of avirul 63.3 1.3E+02 0.0028 28.0 11.8 76 558-634 4-81 (273)
392 PF08424 NRDE-2: NRDE-2, neces 62.9 1.7E+02 0.0038 29.4 19.5 67 166-233 61-130 (321)
393 PF12862 Apc5: Anaphase-promot 62.0 46 0.00099 26.2 7.2 54 635-688 8-69 (94)
394 KOG2908 26S proteasome regulat 61.8 1E+02 0.0023 30.6 10.5 78 559-636 79-167 (380)
395 PF10579 Rapsyn_N: Rapsyn N-te 61.5 28 0.00061 26.1 5.2 18 629-646 47-64 (80)
396 KOG1464 COP9 signalosome, subu 61.4 1.5E+02 0.0033 28.3 18.6 268 409-684 20-327 (440)
397 PF09670 Cas_Cas02710: CRISPR- 61.2 1.4E+02 0.0031 30.9 12.4 55 529-584 140-198 (379)
398 PF14689 SPOB_a: Sensor_kinase 60.6 20 0.00043 25.6 4.3 46 641-688 6-51 (62)
399 PHA02875 ankyrin repeat protei 60.6 2.2E+02 0.0048 29.8 14.6 14 318-331 73-86 (413)
400 KOG4077 Cytochrome c oxidase, 60.2 59 0.0013 27.0 7.2 58 644-702 68-125 (149)
401 KOG4521 Nuclear pore complex, 60.1 3.5E+02 0.0077 32.0 16.1 127 123-257 925-1071(1480)
402 PF07163 Pex26: Pex26 protein; 60.0 1.2E+02 0.0026 29.4 10.3 88 491-578 89-181 (309)
403 PF14853 Fis1_TPR_C: Fis1 C-te 60.0 15 0.00033 25.2 3.4 31 697-729 3-33 (53)
404 PF14689 SPOB_a: Sensor_kinase 59.7 22 0.00047 25.4 4.4 26 628-653 26-51 (62)
405 KOG0292 Vesicle coat complex C 58.3 3.3E+02 0.0072 31.1 22.2 129 180-338 653-781 (1202)
406 PF03474 DMA: DMRTA motif; In 57.2 18 0.00039 22.8 3.0 33 72-104 6-38 (39)
407 KOG2062 26S proteasome regulat 56.9 3.2E+02 0.007 30.5 38.3 172 175-355 64-253 (929)
408 PF11846 DUF3366: Domain of un 56.7 30 0.00064 31.8 6.1 48 642-693 128-175 (193)
409 PF08311 Mad3_BUB1_I: Mad3/BUB 56.4 1.2E+02 0.0026 25.5 10.3 104 96-231 21-125 (126)
410 PF04190 DUF410: Protein of un 55.1 2.1E+02 0.0045 27.8 19.7 25 519-543 89-113 (260)
411 PF09477 Type_III_YscG: Bacter 54.5 1E+02 0.0023 24.8 7.5 78 605-689 21-98 (116)
412 PF11846 DUF3366: Domain of un 53.1 41 0.00089 30.8 6.4 36 621-658 140-175 (193)
413 PF00244 14-3-3: 14-3-3 protei 52.2 2.2E+02 0.0047 27.2 11.8 58 176-233 7-65 (236)
414 KOG3364 Membrane protein invol 52.1 1.5E+02 0.0032 25.2 10.4 71 587-659 29-103 (149)
415 PF10366 Vps39_1: Vacuolar sor 51.7 87 0.0019 25.5 7.2 28 171-198 40-67 (108)
416 PF04910 Tcf25: Transcriptiona 50.9 3E+02 0.0064 28.3 20.7 153 132-303 8-167 (360)
417 PF11663 Toxin_YhaV: Toxin wit 50.5 12 0.00027 31.3 2.1 27 704-730 104-130 (140)
418 PF12862 Apc5: Anaphase-promot 49.6 1.3E+02 0.0027 23.7 8.0 54 600-653 8-69 (94)
419 KOG0545 Aryl-hydrocarbon recep 49.6 2.4E+02 0.0051 26.8 10.2 99 592-694 180-296 (329)
420 PHA02875 ankyrin repeat protei 49.5 3.3E+02 0.0072 28.5 15.8 16 283-298 73-88 (413)
421 PRK12798 chemotaxis protein; R 49.1 3.3E+02 0.0071 28.3 20.2 50 498-547 125-175 (421)
422 KOG0551 Hsp90 co-chaperone CNS 48.0 94 0.002 30.8 7.8 94 593-688 84-181 (390)
423 cd08819 CARD_MDA5_2 Caspase ac 47.8 1.3E+02 0.0028 23.3 7.0 64 260-329 22-85 (88)
424 PRK10941 hypothetical protein; 46.6 2.9E+02 0.0063 27.0 11.2 60 209-269 185-244 (269)
425 PF13929 mRNA_stabil: mRNA sta 46.6 2.9E+02 0.0064 27.0 18.3 116 290-405 143-263 (292)
426 KOG2422 Uncharacterized conser 46.0 4.2E+02 0.0092 28.7 17.7 171 95-269 252-448 (665)
427 KOG2422 Uncharacterized conser 46.0 4.2E+02 0.0092 28.7 17.8 51 531-581 353-404 (665)
428 PF13929 mRNA_stabil: mRNA sta 45.9 3E+02 0.0065 27.0 18.0 62 517-578 199-261 (292)
429 PF02184 HAT: HAT (Half-A-TPR) 45.9 48 0.001 20.0 3.5 25 675-701 2-26 (32)
430 PF11817 Foie-gras_1: Foie gra 45.7 1.2E+02 0.0027 29.1 8.6 59 664-722 182-245 (247)
431 KOG0687 26S proteasome regulat 45.6 3.2E+02 0.0069 27.2 15.4 97 521-619 105-210 (393)
432 PF09670 Cas_Cas02710: CRISPR- 44.2 2.8E+02 0.0062 28.7 11.4 53 460-513 141-197 (379)
433 PF14561 TPR_20: Tetratricopep 43.9 1.5E+02 0.0033 23.0 8.8 30 204-233 21-50 (90)
434 PRK10564 maltose regulon perip 43.6 53 0.0012 32.1 5.5 35 273-307 254-289 (303)
435 PRK13800 putative oxidoreducta 43.5 6.3E+02 0.014 30.0 27.8 247 448-723 633-880 (897)
436 PF11848 DUF3368: Domain of un 43.4 96 0.0021 20.7 5.2 33 181-213 13-45 (48)
437 COG4976 Predicted methyltransf 43.1 58 0.0013 30.3 5.3 57 634-694 4-61 (287)
438 COG4941 Predicted RNA polymera 43.0 3.6E+02 0.0078 27.0 11.1 121 569-695 270-398 (415)
439 KOG3807 Predicted membrane pro 42.8 3.5E+02 0.0076 26.8 14.0 149 176-340 190-341 (556)
440 KOG0686 COP9 signalosome, subu 42.6 1.9E+02 0.0041 29.7 9.1 62 592-653 152-215 (466)
441 cd08819 CARD_MDA5_2 Caspase ac 41.5 1.6E+02 0.0036 22.7 7.1 36 497-537 48-83 (88)
442 KOG0991 Replication factor C, 41.3 3.1E+02 0.0068 25.9 13.3 20 569-588 252-271 (333)
443 smart00386 HAT HAT (Half-A-TPR 39.6 67 0.0015 18.4 3.9 27 185-212 2-28 (33)
444 KOG4077 Cytochrome c oxidase, 38.8 2E+02 0.0043 24.1 7.1 45 469-513 68-112 (149)
445 PF11663 Toxin_YhaV: Toxin wit 38.8 35 0.00076 28.7 3.0 31 671-703 106-136 (140)
446 PRK14956 DNA polymerase III su 38.7 4.3E+02 0.0093 28.3 11.7 100 573-696 184-284 (484)
447 KOG0551 Hsp90 co-chaperone CNS 38.3 1.5E+02 0.0034 29.4 7.6 94 172-266 83-179 (390)
448 smart00777 Mad3_BUB1_I Mad3/BU 38.3 2.4E+02 0.0052 23.7 9.5 43 677-719 80-123 (125)
449 PF14561 TPR_20: Tetratricopep 38.3 1.9E+02 0.0041 22.5 9.2 38 107-147 14-51 (90)
450 cd00280 TRFH Telomeric Repeat 38.0 2.2E+02 0.0048 25.7 7.8 14 571-584 85-98 (200)
451 PF09477 Type_III_YscG: Bacter 37.7 2.2E+02 0.0048 23.1 9.2 14 186-199 22-35 (116)
452 KOG2659 LisH motif-containing 37.2 3E+02 0.0066 25.8 9.0 101 586-688 22-131 (228)
453 PF11848 DUF3368: Domain of un 36.9 1.3E+02 0.0028 20.1 5.2 26 638-663 15-40 (48)
454 PRK10564 maltose regulon perip 36.5 69 0.0015 31.3 5.1 35 343-377 254-289 (303)
455 cd00280 TRFH Telomeric Repeat 36.2 2.6E+02 0.0056 25.3 8.0 14 536-549 85-98 (200)
456 PF00244 14-3-3: 14-3-3 protei 35.9 3.9E+02 0.0085 25.4 12.9 18 671-688 180-197 (236)
457 PRK09857 putative transposase; 35.7 4.2E+02 0.0092 26.2 10.7 55 602-657 218-272 (292)
458 PF02847 MA3: MA3 domain; Int 35.2 1.5E+02 0.0032 24.1 6.5 23 594-616 6-28 (113)
459 PRK13800 putative oxidoreducta 35.2 8.3E+02 0.018 29.0 29.1 259 189-479 622-881 (897)
460 KOG4279 Serine/threonine prote 35.1 7E+02 0.015 28.1 13.5 210 362-601 180-411 (1226)
461 PRK09857 putative transposase; 34.5 2.3E+02 0.005 28.1 8.6 57 636-693 217-273 (292)
462 PF10255 Paf67: RNA polymerase 34.2 2.4E+02 0.0051 29.4 8.8 61 628-688 125-192 (404)
463 PRK15180 Vi polysaccharide bio 34.1 5.8E+02 0.013 26.9 31.0 88 250-339 333-420 (831)
464 COG5159 RPN6 26S proteasome re 33.6 4.6E+02 0.01 25.6 21.8 32 384-415 129-164 (421)
465 PF12968 DUF3856: Domain of Un 33.6 2.8E+02 0.0061 23.0 11.3 59 662-720 57-125 (144)
466 PF15469 Sec5: Exocyst complex 33.0 3.7E+02 0.008 24.2 10.6 57 171-233 58-114 (182)
467 KOG0991 Replication factor C, 32.7 4.4E+02 0.0094 25.0 14.5 81 577-660 181-273 (333)
468 PF10475 DUF2450: Protein of u 32.7 3.1E+02 0.0067 27.2 9.3 114 246-370 104-222 (291)
469 PF09454 Vps23_core: Vps23 cor 31.9 98 0.0021 22.4 4.1 48 413-461 6-53 (65)
470 KOG2659 LisH motif-containing 31.7 4.4E+02 0.0096 24.8 9.2 22 281-302 70-91 (228)
471 COG4715 Uncharacterized conser 31.6 7E+02 0.015 27.0 23.1 103 207-316 305-409 (587)
472 KOG0687 26S proteasome regulat 31.5 5.4E+02 0.012 25.7 15.0 148 551-703 66-224 (393)
473 COG2178 Predicted RNA-binding 31.4 4.1E+02 0.0089 24.3 9.5 17 672-688 133-149 (204)
474 PRK08691 DNA polymerase III su 31.3 5.1E+02 0.011 29.3 11.2 86 606-694 180-279 (709)
475 KOG0128 RNA-binding protein SA 31.2 8.5E+02 0.018 27.9 36.6 435 252-720 91-559 (881)
476 KOG0403 Neoplastic transformat 31.1 6.4E+02 0.014 26.4 27.3 26 383-408 217-242 (645)
477 PF10366 Vps39_1: Vacuolar sor 30.9 2.9E+02 0.0063 22.4 8.3 27 277-303 41-67 (108)
478 KOG0686 COP9 signalosome, subu 30.8 6.2E+02 0.013 26.2 14.5 64 170-233 150-215 (466)
479 KOG1839 Uncharacterized protei 30.8 7.8E+02 0.017 29.8 12.9 153 532-684 944-1123(1236)
480 PF15297 CKAP2_C: Cytoskeleton 30.2 1.6E+02 0.0035 29.5 6.5 68 638-707 115-187 (353)
481 PF07720 TPR_3: Tetratricopept 29.8 1.2E+02 0.0026 18.8 3.7 23 697-719 3-25 (36)
482 PF15297 CKAP2_C: Cytoskeleton 29.4 5.8E+02 0.013 25.8 10.1 67 603-671 115-186 (353)
483 smart00777 Mad3_BUB1_I Mad3/BU 28.8 3.5E+02 0.0076 22.7 10.6 58 166-229 65-123 (125)
484 PF07678 A2M_comp: A-macroglob 28.0 2.1E+02 0.0045 27.5 7.0 44 257-302 116-159 (246)
485 KOG1839 Uncharacterized protei 28.0 8.7E+02 0.019 29.4 12.6 156 565-720 942-1124(1236)
486 PRK13342 recombination factor 27.8 7.3E+02 0.016 26.1 20.7 24 463-486 243-266 (413)
487 COG5159 RPN6 26S proteasome re 27.8 5.8E+02 0.013 24.9 21.0 52 210-261 8-66 (421)
488 KOG2581 26S proteasome regulat 27.8 7E+02 0.015 25.8 12.8 154 554-723 125-291 (493)
489 PF11817 Foie-gras_1: Foie gra 27.8 2.6E+02 0.0056 26.9 7.6 21 596-616 184-204 (247)
490 PF09454 Vps23_core: Vps23 cor 27.8 1.1E+02 0.0023 22.2 3.6 48 273-321 6-53 (65)
491 KOG1874 KEKE-like motif-contai 27.2 1.2E+03 0.026 28.3 14.9 107 124-231 79-187 (1477)
492 KOG3807 Predicted membrane pro 27.1 6.4E+02 0.014 25.1 12.3 105 569-688 230-339 (556)
493 TIGR01228 hutU urocanate hydra 26.9 2.6E+02 0.0057 29.5 7.5 177 533-725 207-423 (545)
494 PRK08691 DNA polymerase III su 26.6 9.8E+02 0.021 27.2 12.5 86 571-659 180-279 (709)
495 PF07840 FadR_C: FadR C-termin 26.6 4.6E+02 0.0099 23.3 8.4 15 184-198 48-62 (164)
496 COG4976 Predicted methyltransf 26.5 1.6E+02 0.0034 27.6 5.3 60 599-661 4-63 (287)
497 KOG4567 GTPase-activating prot 26.2 3.5E+02 0.0076 26.7 7.7 71 610-685 263-343 (370)
498 PF04762 IKI3: IKI3 family; I 26.1 1.2E+03 0.025 27.9 17.5 134 569-721 792-927 (928)
499 COG0735 Fur Fe2+/Zn2+ uptake r 25.7 3.6E+02 0.0079 23.3 7.4 30 314-343 24-53 (145)
500 cd02679 MIT_spastin MIT: domai 25.6 1.9E+02 0.0041 22.0 4.8 43 673-722 21-66 (79)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-79 Score=702.02 Aligned_cols=607 Identities=22% Similarity=0.335 Sum_probs=501.6
Q ss_pred CCChHHHHHHHHhhc--cChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHH
Q 004744 80 RLNSVIIVEVLYRLR--DNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVD 157 (732)
Q Consensus 80 ~l~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (732)
..+...+..++..|. +.+..+.++|..+....+ ..+...+++|+..|++.|++++|+.+|++|.
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~------------ 148 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP--SLGVRLGNAMLSMFVRFGELVHAWYVFGKMP------------ 148 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC--CCCchHHHHHHHHHHhCCChHHHHHHHhcCC------------
Confidence 344444455555443 456777777777665443 4566777888888888888888888877773
Q ss_pred hhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004744 158 SFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIE 237 (732)
Q Consensus 158 ~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 237 (732)
.+|..+|+.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|.+.++.+.+.+++..+.+.|+.
T Consensus 149 ---------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~ 219 (857)
T PLN03077 149 ---------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE 219 (857)
T ss_pred ---------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC
Confidence 25688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 004744 238 LNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLI 317 (732)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 317 (732)
||+.++|.|+.+|++.|++++|.++|++|.+ ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred cccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 9999999999999999999999999988864 588889999999999999999999999998888889999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHH
Q 004744 318 NGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLD 397 (732)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 397 (732)
.+|++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|+++
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~ 371 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPD 371 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHH
Confidence 98888888888888888888888888888888888888888888888888888863 57788888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 398 RALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEML 477 (732)
Q Consensus 398 ~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 477 (732)
+|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.++..+|+.|+.+|++.|++++|.++|++|.
T Consensus 372 ~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred HHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888888888888887777777777777777777777777777765
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------------------------------HCCCCCCHHHH
Q 004744 478 ERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMT----------------------------------QKSIKPDIVTY 523 (732)
Q Consensus 478 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------------------------------~~~~~~~~~~~ 523 (732)
+ +|..+|+.++.+|++.|+.++|+.+|++|. +.|+.+|..++
T Consensus 452 ~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~ 527 (857)
T PLN03077 452 E----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527 (857)
T ss_pred C----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence 4 244555555555555555555555555554 44444444455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004744 524 NTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRS 603 (732)
Q Consensus 524 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 603 (732)
++|+++|+++|++++|.++|+++ .+|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 56666777777777777777665 4688899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004744 604 GDASKADEFLSKMV-SEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELI 682 (732)
Q Consensus 604 g~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 682 (732)
|++++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|. +.||..+|++|+.+|..+|+.+.|+..
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 99999999999998 56899999999999999999999999999999885 689999999999999999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC
Q 004744 683 LWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEMLQRGFVPDDA 731 (732)
Q Consensus 683 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 731 (732)
.+++.+ +.|+ ...|..|.+.|+..|+|++|.++.+.|.++|++++..
T Consensus 680 a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 680 AQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred HHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 888888 7885 5778888899999999999999999999999998763
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.5e-78 Score=689.51 Aligned_cols=593 Identities=20% Similarity=0.300 Sum_probs=566.8
Q ss_pred cChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHH
Q 004744 95 DNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFD 174 (732)
Q Consensus 95 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 174 (732)
+.++.|..+|+..... ++.++..+|..++..+.+.+.++.|..++..+++. ....+..+++
T Consensus 65 g~~~~A~~l~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------------~~~~~~~~~n 125 (857)
T PLN03077 65 GQLEQALKLLESMQEL--RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS-----------------HPSLGVRLGN 125 (857)
T ss_pred CCHHHHHHHHHHHHhc--CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc-----------------CCCCCchHHH
Confidence 6899999999987653 46778899999999999999999999999988752 2335678899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004744 175 LVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDH 254 (732)
Q Consensus 175 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (732)
.|+.+|++.|+++.|.++|++|.+ ||..+||.++.+|++.|++++|.++|++|...|+.||.+||+.++++|++.+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 999999999999999999999975 5899999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 004744 255 KIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLD 334 (732)
Q Consensus 255 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 334 (732)
+++.+.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|.. ||..+||++|.+|++.|++++|.++|+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999975 589999999999999999999999999
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 004744 335 EMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD 414 (732)
Q Consensus 335 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~ 414 (732)
+|.+.|+.||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 368
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 415 NVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHG 494 (732)
Q Consensus 415 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 494 (732)
..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+++.|+.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004744 495 HCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEA 574 (732)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 574 (732)
|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. +..||..+|+.++.+|++.|+++.+
T Consensus 434 y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHh
Confidence 9999999999999999975 5889999999999999999999999999986 5899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 575 FRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQ 654 (732)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 654 (732)
.+++..+.+.|+.+|..++++++++|++.|++++|.++|+.+ .||..+|+++|.+|++.|+.++|+++|++|.+.
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999987 589999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC
Q 004744 655 GLVPDVITYNVILTGFCRQGRMHDSELILWRMI-EKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQRGFVPDDA 731 (732)
Q Consensus 655 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 731 (732)
|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|++++++|++.|++++|.+++++| +++||..
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~ 658 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPA 658 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHH
Confidence 999999999999999999999999999999999 6899999999999999999999999999999999 6888853
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8e-73 Score=631.17 Aligned_cols=547 Identities=20% Similarity=0.299 Sum_probs=433.1
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGI-CFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIM 246 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 246 (732)
.+...+..++..|++.|++++|+++|++|.+.|+ .++...++.++.+|.+.|..++|.++|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4456677777777778888888888888877774 35666677777778888888888887777753 778888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 004744 247 VNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRC 326 (732)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 326 (732)
+.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHh--CCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH
Q 004744 327 DRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSR--RGVAPDIVSFSTLIGIFSRNGQLDRALMYFR 404 (732)
Q Consensus 327 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~ 404 (732)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888865 5677788888888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004744 405 EMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPD 484 (732)
Q Consensus 405 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 484 (732)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004744 485 FYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILING 564 (732)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 564 (732)
..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888888888888877777888888888888888888888888888888877788888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004744 565 YCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKA 644 (732)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 644 (732)
|++.|++++|.++|.+|.+.|+.||..+|+.++..|. +.+++|.++.+.+.... + .......+..++|
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~~A 831 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTSWA 831 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHHHH
Confidence 8888888888888888888888888888888775543 24555555544333210 0 0111122345679
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 645 FALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQR 724 (732)
Q Consensus 645 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 724 (732)
..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|++|++++.+. .++|..++++|.+.
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 9999999999999999999999988889999999999999998888888999999999998432 36899999999999
Q ss_pred CCCCCCCC
Q 004744 725 GFVPDDAF 732 (732)
Q Consensus 725 g~~pd~~~ 732 (732)
|+.|+..|
T Consensus 910 Gi~p~~~~ 917 (1060)
T PLN03218 910 GVVPSVSF 917 (1060)
T ss_pred CCCCCccc
Confidence 99999763
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.9e-72 Score=624.19 Aligned_cols=550 Identities=19% Similarity=0.273 Sum_probs=496.1
Q ss_pred HHhCCChHHHHHHHHHHHHhcCC-ChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHH
Q 004744 128 LVRGRRISDAQALILRMVRKSGV-SRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSIN 206 (732)
Q Consensus 128 l~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 206 (732)
+.......+-..++..+.+.... ....+++.+.. ....+++...++.++..|.+.|.+++|+.+|+.|.. ||..
T Consensus 364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~-~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK-RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 33445556667777777643221 22344555543 112346778889999999999999999999999975 7999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004744 207 ACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYC 286 (732)
Q Consensus 207 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 286 (732)
+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHHhHHHHHHHHHcCCCHhHH
Q 004744 287 REGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQ--MGLSPDTATYNTLLVESCRKENMSEA 364 (732)
Q Consensus 287 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A 364 (732)
+.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999986 67899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004744 365 EEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEK 444 (732)
Q Consensus 365 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 444 (732)
.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004744 445 GCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYN 524 (732)
Q Consensus 445 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 524 (732)
|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..+|+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004744 525 TLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSG 604 (732)
Q Consensus 525 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 604 (732)
.++.+|++.|++++|.++|.+|.+.|+.||..+|+.++..|. +++++|..+.+.+.... + .......+
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~ 826 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENK 826 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccc
Confidence 999999999999999999999999999999999999997654 25666666655444221 0 01111123
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 605 DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILW 684 (732)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 684 (732)
..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++++++++. .++|..+++
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~ 904 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLE 904 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHH
Confidence 346799999999999999999999999998889999999999999998888889999999999998543 368999999
Q ss_pred HHHHcCCCCCHH
Q 004744 685 RMIEKGLNPDRS 696 (732)
Q Consensus 685 ~~~~~g~~p~~~ 696 (732)
+|.+.|+.|+..
T Consensus 905 em~~~Gi~p~~~ 916 (1060)
T PLN03218 905 EAASLGVVPSVS 916 (1060)
T ss_pred HHHHcCCCCCcc
Confidence 999999999864
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-64 Score=565.52 Aligned_cols=476 Identities=24% Similarity=0.349 Sum_probs=377.4
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 004744 202 CFSINACNSLLGGLVKIGWVDLAREVYAEVVRSG-IELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNT 280 (732)
Q Consensus 202 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 280 (732)
..+..+|+.++.+|.+.|++++|.++|+.|...+ ..||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3466788888888888888888888888887654 578888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCC
Q 004744 281 LINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKEN 360 (732)
Q Consensus 281 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 360 (732)
|+.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 88888888888888888888864 57777777777777777777777777777777777777777777777777666
Q ss_pred HhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004744 361 MSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDE 440 (732)
Q Consensus 361 ~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 440 (732)
.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--------------------------------- 286 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--------------------------------- 286 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---------------------------------
Confidence 66666666666666666666666666666666665555555555543
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004744 441 MLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDI 520 (732)
Q Consensus 441 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 520 (732)
+ +|.++||.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||.
T Consensus 287 --~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 287 --E----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred --C----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 2 3566677777777777777777777777777777777777777777777888888888888888887878888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004744 521 VTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGY 600 (732)
Q Consensus 521 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 600 (732)
.+|++|+++|+++|++++|.++|++|.+ ||..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 8888888888888888888888887753 578888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004744 601 CRSGDASKADEFLSKMVS-EGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDS 679 (732)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 679 (732)
++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++|. +.|+..+|++|+.+|+.+|+++.|
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHH
Confidence 888888888888888876 4888888888888888888888888888887763 678888888888888888888888
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004744 680 ELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEMLQRGFVPD 729 (732)
Q Consensus 680 ~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 729 (732)
..+++++.+ +.|+ ..+|..|+++|++.|++++|.+++++|.++|+++.
T Consensus 514 ~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 514 RLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 888888876 6774 57888888888888888888888888888888654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-64 Score=564.69 Aligned_cols=477 Identities=19% Similarity=0.312 Sum_probs=445.4
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004744 167 GSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKG-ICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNI 245 (732)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (732)
..+...|+.+|..|.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++.+.|.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456789999999999999999999999998765 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 004744 246 MVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGR 325 (732)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 325 (732)
++.+|++.|++++|.++|++|.+ ||.++||++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999974 79999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHH
Q 004744 326 CDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFRE 405 (732)
Q Consensus 326 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~ 405 (732)
.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.+ +|..+||+++.+|++.|+.++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999965 5899999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 406 MKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDF 485 (732)
Q Consensus 406 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 485 (732)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.+|..+++.|+.+|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864 588
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 004744 486 YTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMIS-RKISPNYISYGILING 564 (732)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~ 564 (732)
.+|+.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999976 5888999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 004744 565 YCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDP-DSISYNTLINGFVREENMDK 643 (732)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 643 (732)
|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|..+++++.+. .| +..+|..|++.|++.|++++
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHH
Confidence 99999999999988766 46889999999999999999999999998888753 44 46688899999999999999
Q ss_pred HHHHHHHHHHCCCCCCH
Q 004744 644 AFALVSKMENQGLVPDV 660 (732)
Q Consensus 644 A~~~~~~~~~~g~~p~~ 660 (732)
|.+++++|.+.|+...+
T Consensus 547 A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 547 AAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHHHHHHHcCCccCC
Confidence 99999999998876543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.1e-39 Score=375.32 Aligned_cols=609 Identities=12% Similarity=0.056 Sum_probs=496.8
Q ss_pred hccChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhH----------------HH
Q 004744 93 LRDNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLE----------------IV 156 (732)
Q Consensus 93 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~ 156 (732)
..++++.|...|..+....|.+ ..++..+..++...|++++|...+.+++...+..+.. ..
T Consensus 273 ~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 273 QKKNYEDARETLQDALKSAPEY---LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HhcCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 3466777777776666555542 3344455566666777777777776666543322110 00
Q ss_pred HhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 004744 157 DSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGI 236 (732)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 236 (732)
..+.......+.++..+..++..|.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+.+.+..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 427 (899)
T TIGR02917 350 ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLD- 427 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-
Confidence 1111111334556788888999999999999999999999887655 67788888889999999999999999988765
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 004744 237 ELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSL 316 (732)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 316 (732)
+........++..+.+.|++++|..+++.+.+.. +++..+|..++..|...|++++|.+.|+++.+... .+...+..+
T Consensus 428 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 505 (899)
T TIGR02917 428 PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANL 505 (899)
T ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHH
Confidence 3445566677888999999999999999988764 34677889999999999999999999999987643 366778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCH
Q 004744 317 INGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQL 396 (732)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 396 (732)
+..+...|++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|...+.++.+.+. .+...+..++..+...|++
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCH
Confidence 899999999999999999998765 45677888899999999999999999999887653 3677888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 397 DRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEM 476 (732)
Q Consensus 397 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 476 (732)
++|..+++++.+.. +.+...|..+...|...|++++|+..++++.+..+. +...+..+...+.+.|++++|...|+++
T Consensus 584 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 584 KKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998753 446788999999999999999999999999886543 6778888999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004744 477 LERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYI 556 (732)
Q Consensus 477 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 556 (732)
.+..+. +..++..++..+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.|+++.... |+..
T Consensus 662 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 737 (899)
T TIGR02917 662 LELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQ 737 (899)
T ss_pred HhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCch
Confidence 887543 67888999999999999999999999998875 3477788888899999999999999999998874 3446
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004744 557 SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFV 636 (732)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 636 (732)
++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|.+.|+++.+.. +.+...++.++..+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 77788899999999999999999998874 6788899999999999999999999999998864 457888999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004744 637 REENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAF 715 (732)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 715 (732)
..|+ ++|+.+++++.+. .| ++.++..++.++...|++++|..+++++++.+.. +..++..++.++.+.|++++|.
T Consensus 816 ~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred hcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 9999 8899999999884 44 5567888899999999999999999999994332 7889999999999999999999
Q ss_pred HHHHHHH
Q 004744 716 RFHDEML 722 (732)
Q Consensus 716 ~~~~~m~ 722 (732)
+++++|+
T Consensus 892 ~~~~~~~ 898 (899)
T TIGR02917 892 KELDKLL 898 (899)
T ss_pred HHHHHHh
Confidence 9999986
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-37 Score=365.00 Aligned_cols=611 Identities=13% Similarity=0.083 Sum_probs=519.8
Q ss_pred ccChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHH----------------HH
Q 004744 94 RDNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEI----------------VD 157 (732)
Q Consensus 94 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~ 157 (732)
.++++.|...++.+....|+ ++..+.....++...|++++|...+.+++...+...... ..
T Consensus 240 ~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 316 (899)
T TIGR02917 240 AGEFEEAEKHADALLKKAPN---SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQ 316 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Confidence 47899999999998877664 445556666777889999999999999986543322110 11
Q ss_pred hhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004744 158 SFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIE 237 (732)
Q Consensus 158 ~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 237 (732)
.+.......+.+...+..++..+.+.|++++|...++.+.+.++. +...+..+...+.+.|++++|.++|+++.+.. +
T Consensus 317 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 394 (899)
T TIGR02917 317 YLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATELD-P 394 (899)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 111112234566778888999999999999999999999887655 78889999999999999999999999998764 5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 004744 238 LNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLI 317 (732)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 317 (732)
.+...+..+...+...|++++|...++.+.+.... ....+..++..+.+.|++++|.++++.+... .+++..+|..+.
T Consensus 395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~ 472 (899)
T TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLG 472 (899)
T ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHH
Confidence 67778888889999999999999999999887543 3456677888999999999999999999875 344788999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHH
Q 004744 318 NGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLD 397 (732)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 397 (732)
..+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.++++.+.+. .+..++..+...+.+.|+.+
T Consensus 473 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 550 (899)
T TIGR02917 473 AIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEE 550 (899)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998764 44566788899999999999999999999988753 37888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 398 RALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEML 477 (732)
Q Consensus 398 ~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 477 (732)
+|..+++++.+.+ +.+...+..++..|.+.|++++|..+++.+.+..+ .+...|..++..+.+.|++++|...|+.+.
T Consensus 551 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 551 EAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998764 34667888899999999999999999999987654 478899999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004744 478 ERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYIS 557 (732)
Q Consensus 478 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 557 (732)
+.... +...+..+...+...|++++|...++.+.+.. +.+...+..++..+...|++++|..+++.+.+.. +.+...
T Consensus 629 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 705 (899)
T TIGR02917 629 ALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALG 705 (899)
T ss_pred HhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHH
Confidence 87543 67788899999999999999999999998764 3467889999999999999999999999998875 457788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004744 558 YGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVR 637 (732)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 637 (732)
+..+...+...|++++|.+.|+++...+ |+..++..++.++.+.|++++|.+.++++.+.. +.+...+..++..|.+
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 8899999999999999999999999874 555778889999999999999999999998864 4578889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 004744 638 EENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAFR 716 (732)
Q Consensus 638 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 716 (732)
.|++++|.+.|+++.+.. +++..+++.++..+...|+ .+|..+++++.+ ..| +...+..++.++...|++++|.+
T Consensus 783 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred CcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999853 4567889999999999999 889999999998 566 45788899999999999999999
Q ss_pred HHHHHHHCC
Q 004744 717 FHDEMLQRG 725 (732)
Q Consensus 717 ~~~~m~~~g 725 (732)
+++++++.+
T Consensus 859 ~~~~a~~~~ 867 (899)
T TIGR02917 859 LLRKAVNIA 867 (899)
T ss_pred HHHHHHhhC
Confidence 999999754
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.3e-28 Score=286.68 Aligned_cols=615 Identities=13% Similarity=0.029 Sum_probs=443.9
Q ss_pred cChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHH
Q 004744 95 DNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFD 174 (732)
Q Consensus 95 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 174 (732)
++.+.|.+.+..+....|+ ++..+..++.++.+.|+.++|...+++.++..+..+... .+...+....++.....
T Consensus 42 ~~~d~a~~~l~kl~~~~p~---~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~--~~~~~~~~~~~~~~~~l 116 (1157)
T PRK11447 42 HREDLVRQSLYRLELIDPN---NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYR--SSRTTMLLSTPEGRQAL 116 (1157)
T ss_pred CChHHHHHHHHHHHccCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHH--HHHHHHHhcCCchhhHH
Confidence 6788888888888877776 688999999999999999999999999987654433211 11111112233344456
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004744 175 LVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDH 254 (732)
Q Consensus 175 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (732)
.+++.+.+.|++++|+..|+++.+.++.................|+.++|++.|+++++.. |.+...+..+...+...|
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 6777899999999999999999877544222221111222234589999999999998875 667788889999999999
Q ss_pred ChhHHHHHHHHHHhCCC------------------C--------------CCHHHH---------------------HHH
Q 004744 255 KIDSAKMFLCEMEQKGV------------------Y--------------PDTVTY---------------------NTL 281 (732)
Q Consensus 255 ~~~~A~~~~~~~~~~g~------------------~--------------p~~~~~---------------------~~l 281 (732)
+.++|+..++++.+... . |+.... ...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 99999999998765321 0 000000 011
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHhH------------
Q 004744 282 INAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSP-DTATY------------ 348 (732)
Q Consensus 282 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~------------ 348 (732)
...+...|++++|+..|++..+.... +..++..+...+.+.|++++|+..|++.++..... +...+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 34456678888888888888776433 67778888888888888888888888887653211 11111
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004744 349 NTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRN 428 (732)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 428 (732)
......+.+.|++++|.+.|+++.+... .+...+..+...+...|++++|++.|+++.+... .+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-h
Confidence 1223456678888888888888877643 2566777788888888888888888888876532 24455666666664 4
Q ss_pred CCHHHHHHHHHHHHHCCCC--------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004744 429 GFVLEALKMRDEMLEKGCV--------MDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGN 500 (732)
Q Consensus 429 g~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 500 (732)
++.++|+..++.+...... .....+..+...+...|++++|++.|++.++..+. +...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 5678887777654332100 01223455667788889999999999999887654 66777888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCCH
Q 004744 501 MNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYI---------SYGILINGYCSMGHV 571 (732)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g~~ 571 (732)
+++|...++++.+... .+...+..+...+.+.++.++|...++.+......++.. .+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 9999999999887543 244555555556677889999999888765432222221 123456778889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 572 TEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKM 651 (732)
Q Consensus 572 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 651 (732)
++|..+++. .+.+...+..+...+.+.|++++|++.|+++++.. +.+...+..++..+...|++++|++.++.+
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999998872 35677778889999999999999999999999864 335788899999999999999999999998
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-C
Q 004744 652 ENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGL--NP---DRSTYTTLINGHVSQNNLKEAFRFHDEMLQ-R 724 (732)
Q Consensus 652 ~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~ 724 (732)
.+ ..| +..++..+..++...|++++|..+++++.+... .| +...+..++..+...|++++|...+++.+. .
T Consensus 664 l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 664 PA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred hc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 87 345 456777888899999999999999999987321 12 224677788999999999999999999974 4
Q ss_pred CCCCC
Q 004744 725 GFVPD 729 (732)
Q Consensus 725 g~~pd 729 (732)
|+.|+
T Consensus 742 ~~~~~ 746 (1157)
T PRK11447 742 GITPT 746 (1157)
T ss_pred CCCCC
Confidence 56553
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=7.7e-27 Score=273.88 Aligned_cols=568 Identities=11% Similarity=0.011 Sum_probs=385.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004744 121 LSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKG 200 (732)
Q Consensus 121 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 200 (732)
.-..++..-..++.+.|.+.+.+++ ...+.++.++..++..+.+.|+.++|.+.++++.+..
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~------------------~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~ 92 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLE------------------LIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA 92 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHH------------------ccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 4566677778899999999999987 3456778999999999999999999999999999987
Q ss_pred CccCHHHH----------------HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHH
Q 004744 201 ICFSINAC----------------NSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYT-LNIMVNALCKDHKIDSAKMFL 263 (732)
Q Consensus 201 ~~~~~~~~----------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~ 263 (732)
+. +...+ ..+...+.+.|++++|.+.|+.+.+.+ +++... ...+.......|+.++|+..+
T Consensus 93 P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L 170 (1157)
T PRK11447 93 PD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQL 170 (1157)
T ss_pred CC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHH
Confidence 65 33332 334457889999999999999998764 444432 111222223459999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC------------------CC-HhhHH----------
Q 004744 264 CEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLK------------------PG-VFTYN---------- 314 (732)
Q Consensus 264 ~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------------p~-~~~~~---------- 314 (732)
+++.+..+. +...+..+...+...|+.++|++.++++...... +. ...+.
T Consensus 171 ~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~ 249 (1157)
T PRK11447 171 QRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD 249 (1157)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch
Confidence 999998533 6677889999999999999999999998653210 00 00000
Q ss_pred ------------------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHH
Q 004744 315 ------------------------SLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCE 370 (732)
Q Consensus 315 ------------------------~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (732)
.....+...|++++|+..|++.++.. +.+..++..+...+.+.|++++|++.|++
T Consensus 250 ~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~ 328 (1157)
T PRK11447 250 SVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEK 328 (1157)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11223445566666666666666543 23455666666666666666666666666
Q ss_pred HHhCCCCC-CHhHH------------HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004744 371 MSRRGVAP-DIVSF------------STLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKM 437 (732)
Q Consensus 371 ~~~~g~~~-~~~~~------------~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 437 (732)
..+..... ....| ......+.+.|++++|...|+++.+... .+...+..+...+...|++++|++.
T Consensus 329 Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~ 407 (1157)
T PRK11447 329 ALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERY 407 (1157)
T ss_pred HHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66543221 11111 1123345566666666666666665532 2444555566666666666666666
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 438 RDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVF--------PDFYTFTTLIHGHCKDGNMNKALNLFD 509 (732)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~ 509 (732)
|++.++..+. +...+..+...+. .++.++|..+++.+...... .....+..+...+...|++++|+..++
T Consensus 408 y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 408 YQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666655333 3444555555443 34556666665543321100 011223445566667788888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 004744 510 IMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPT 589 (732)
Q Consensus 510 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 589 (732)
+.++.... +...+..+...|.+.|++++|...++++.+... .+...+..+...+...|+.++|+..++.+......++
T Consensus 486 ~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~ 563 (1157)
T PRK11447 486 QRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN 563 (1157)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh
Confidence 87776432 556666777778888888888888888776532 2444444455556677888888887776543322222
Q ss_pred HH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C
Q 004744 590 LV---------SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-D 659 (732)
Q Consensus 590 ~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~ 659 (732)
.. .+......+...|+.++|+++++. .+.+...+..+...+.+.|++++|+..++++.+. .| +
T Consensus 564 ~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~ 636 (1157)
T PRK11447 564 IQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGN 636 (1157)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 11 122445667888999999988872 2345667778899999999999999999999984 45 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 660 VITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEMLQR 724 (732)
Q Consensus 660 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 724 (732)
...+..++..+...|++++|+..++++.+ ..|+ ...+..++.++...|++++|.++++++++.
T Consensus 637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 637 ADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 67889999999999999999999999887 6664 577888999999999999999999999863
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.7e-24 Score=241.85 Aligned_cols=589 Identities=11% Similarity=0.027 Sum_probs=379.9
Q ss_pred hHHHHHHHHhhccChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhh
Q 004744 83 SVIIVEVLYRLRDNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVST 162 (732)
Q Consensus 83 ~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (732)
+......+....++++.|...|+.+....|+ +..++..|+.+|...|++++|...+.++++.
T Consensus 46 ~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~---n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--------------- 107 (987)
T PRK09782 46 PRLDKALKAQKNNDEATAIREFEYIHQQVPD---NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--------------- 107 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------
Confidence 3344455555568999999999999998886 5889999999999999999999999999843
Q ss_pred cCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHH--------HHHcCChHHHHHHHHHHHHc
Q 004744 163 YSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGG--------LVKIGWVDLAREVYAEVVRS 234 (732)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~a~~~~~~~~~~ 234 (732)
.+.|...+..+... ++.++|..+|+++.+..+. +...+..+... |.+. ++|.+.++ ....
T Consensus 108 ---dP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~ 175 (987)
T PRK09782 108 ---HPGDARLERSLAAI----PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATF 175 (987)
T ss_pred ---CcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hhhh
Confidence 44555556555333 8889999999999988766 55566555555 6655 44444444 2222
Q ss_pred CCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhCCCCCCHhh
Q 004744 235 GIELNVYTLNIM-VNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCR-EGFLEEAFQLMNSMSGKGLKPGVFT 312 (732)
Q Consensus 235 ~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~ 312 (732)
...|+..+.... ...|.+.|++++|+..+.++.+.++. +......|..+|.. .++ +++..+++.. ++.+...
T Consensus 176 ~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l 249 (987)
T PRK09782 176 AASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQS 249 (987)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHH
Confidence 233345544544 88999999999999999999998654 45557777778887 477 8888886542 2348888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHhHHH------------------------------HHHHHHcCCCH
Q 004744 313 YNSLINGLCKKGRCDRAKEVLDEMLQMGLS-PDTATYNT------------------------------LLVESCRKENM 361 (732)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~------------------------------li~~~~~~g~~ 361 (732)
+..++..|.+.|+.++|.++++++...... |+..+|.- ++..+.+.+++
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQY 329 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHH
Confidence 999999999999999999999887643211 33222221 13444455555
Q ss_pred hHHHHHHHHHHhCCCCCCHhHHHHHHHHH--HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004744 362 SEAEEIFCEMSRRGVAPDIVSFSTLIGIF--SRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRD 439 (732)
Q Consensus 362 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~--~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 439 (732)
+.+.++.+ +.|.... ..+... ...+...++...+..|.+.. +-+......+.-...+.|+.++|..+++
T Consensus 330 ~~~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~ 400 (987)
T PRK09782 330 DAAQKLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLL 400 (987)
T ss_pred HHHHHHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 54444321 2222221 122111 12345555555555555431 1244444444445567777777777777
Q ss_pred HHHHC-C-CCcCHHHHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHHc-CC-CC--CHHHH
Q 004744 440 EMLEK-G-CVMDVVTYNTILNGLCRAKM---LTEADDL----------------------FNEMLER-GV-FP--DFYTF 488 (732)
Q Consensus 440 ~~~~~-~-~~~~~~~~~~li~~~~~~~~---~~~A~~~----------------------~~~~~~~-~~-~~--~~~~~ 488 (732)
..... + -..+.....-++..|.+.+. ..++..+ +...... +. ++ +...|
T Consensus 401 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~ 480 (987)
T PRK09782 401 QRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAW 480 (987)
T ss_pred HhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHH
Confidence 77652 1 12234444456666666554 2222222 1111111 11 22 45566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004744 489 TTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSM 568 (732)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 568 (732)
..+..++.. ++.++|+..+.+..... |+......+...+...|++++|...|+++... +|+...+..+...+.+.
T Consensus 481 ~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~ 555 (987)
T PRK09782 481 NRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHC
Confidence 666666655 67777887777666542 44433333444445778888888888776554 33444455666677778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004744 569 GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALV 648 (732)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 648 (732)
|+.++|...+++.++.. +.+...+..+.....+.|++++|...+++.++. .|+...+..+...+.+.|++++|+..+
T Consensus 556 Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 556 GNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888777663 333333333444444558888888888887764 356677777777788888888888888
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004744 649 SKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAFRFHDEMLQRGF 726 (732)
Q Consensus 649 ~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 726 (732)
+++.. ..| +...++.+..++...|+.++|+..++++++ ..| +...+..++.++...|++++|...+++.+ .+
T Consensus 633 ~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al--~l 706 (987)
T PRK09782 633 RAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVI--DD 706 (987)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hc
Confidence 88877 445 345667777777788888888888888877 666 45777788888888888888888888877 34
Q ss_pred CCCC
Q 004744 727 VPDD 730 (732)
Q Consensus 727 ~pd~ 730 (732)
.|+.
T Consensus 707 ~P~~ 710 (987)
T PRK09782 707 IDNQ 710 (987)
T ss_pred CCCC
Confidence 4543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=9.6e-23 Score=227.98 Aligned_cols=553 Identities=13% Similarity=0.063 Sum_probs=402.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCc
Q 004744 123 AMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGIC 202 (732)
Q Consensus 123 ~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (732)
.....+...|++++|...|.++++. .|.++.++..|...|.+.|+.++|+..+++..+..+.
T Consensus 49 ~~a~~~~~~Gd~~~A~~~l~~Al~~------------------dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~ 110 (987)
T PRK09782 49 DKALKAQKNNDEATAIREFEYIHQQ------------------VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG 110 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 3334445569999999999999843 5566888999999999999999999999999998653
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCC
Q 004744 203 FSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA--------LCKDHKIDSAKMFLCEMEQKGVYPD 274 (732)
Q Consensus 203 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~g~~p~ 274 (732)
|...+..+ ..+ +++++|.++|+++.+.. |.+..++..+... |.+. ++|.+.++ .......|+
T Consensus 111 -n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~ 180 (987)
T PRK09782 111 -DARLERSL-AAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPE 180 (987)
T ss_pred -cHHHHHHH-HHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCC
Confidence 55555554 222 99999999999999875 5666677666665 5555 55555555 443333445
Q ss_pred HHHHHHH-HHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004744 275 TVTYNTL-INAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCK-KGRCDRAKEVLDEMLQMGLSPDTATYNTLL 352 (732)
Q Consensus 275 ~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 352 (732)
..+.... ...|.+.|++++|++++.++.+.+.. +......|...|.. .++ +++..+++. .+..+...+..++
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala 254 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYA 254 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHH
Confidence 5544444 89999999999999999999998654 56667778888888 477 888888654 2346788899999
Q ss_pred HHHHcCCCHhHHHHHHHHHHhCCCC-CCHhHH------------------------------HHHHHHHHhCCCHHHHHH
Q 004744 353 VESCRKENMSEAEEIFCEMSRRGVA-PDIVSF------------------------------STLIGIFSRNGQLDRALM 401 (732)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~------------------------------~~l~~~~~~~g~~~~A~~ 401 (732)
..|.+.|+.++|.+++.++...-.. |...+| ..++..+.+.++++.+.+
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999999987543211 222221 222555666677775554
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004744 402 YFREMKSAGLVPDNVLYTIIINGY--CRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLER 479 (732)
Q Consensus 402 l~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 479 (732)
+.. +.|..... .++.. ...+...++.+.+..|.+..+. +......+.....+.|+.++|..+|+.....
T Consensus 335 ~~~------~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~ 405 (987)
T PRK09782 335 LLA------TLPANEML--EERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPF 405 (987)
T ss_pred Hhc------CCCcchHH--HHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCC
Confidence 421 33333322 22222 2346777777777777776433 5666666666688999999999999998763
Q ss_pred --CCCCCHHHHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHHC-C-CCC--CHHHHHHHHH
Q 004744 480 --GVFPDFYTFTTLIHGHCKDGN---MNKALNL----------------------FDIMTQK-S-IKP--DIVTYNTLID 528 (732)
Q Consensus 480 --~~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~~~~~-~-~~~--~~~~~~~li~ 528 (732)
+-.++......++..|.+.+. ...+..+ +...... + .++ +...|..+..
T Consensus 406 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~ 485 (987)
T PRK09782 406 QGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAK 485 (987)
T ss_pred CcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHH
Confidence 122344455577888877765 3333322 1111111 1 133 5677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004744 529 GFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASK 608 (732)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 608 (732)
++.. ++.++|...+.+..... |+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++
T Consensus 486 ~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~e 560 (987)
T PRK09782 486 CYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAA 560 (987)
T ss_pred HHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHH
Confidence 7776 89999999888888763 45544444555567899999999999998665 5555667777888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 609 ADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 609 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
|..++++.++.. +.+...+..+...+.+.|++++|...+++..+ ..|+...|..+..++.+.|+.++|+..++++++
T Consensus 561 A~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 561 RDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998864 22333333444455567999999999999998 678888999999999999999999999999999
Q ss_pred cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC
Q 004744 689 KGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEMLQRGFVPDD 730 (732)
Q Consensus 689 ~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 730 (732)
..|+ ...+..++.++...|++++|...+++.++ ..|+.
T Consensus 638 --l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~ 676 (987)
T PRK09782 638 --LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDD 676 (987)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC
Confidence 7885 68899999999999999999999999985 45554
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.1e-22 Score=209.77 Aligned_cols=599 Identities=13% Similarity=0.111 Sum_probs=453.4
Q ss_pred ChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHH
Q 004744 96 NLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDL 175 (732)
Q Consensus 96 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 175 (732)
+.+.|.+.|.++...+|+ +...+-.-+.+....|+|..|..+|..+++.++. |.+++.+ .
T Consensus 145 ~~~~A~a~F~~Vl~~sp~---Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~---------------~~aD~rI--g 204 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQSPD---NILALLGKARIAYNKKDYRGALKYYKKALRINPA---------------CKADVRI--G 204 (1018)
T ss_pred cHHHHHHHHHHHHhhCCc---chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcc---------------cCCCccc--h
Confidence 357899999999888765 6666666777777889999999999998865432 3333332 3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004744 176 VIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKI---GWVDLAREVYAEVVRSGIELNVYTLNIMVNALCK 252 (732)
Q Consensus 176 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (732)
+..++.+.|+.+.|+..|.++.+.++. ++.++-.|...-... ..+..+...+..+-..+ +.|+.+.+.|.+.|.-
T Consensus 205 ig~Cf~kl~~~~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyf 282 (1018)
T KOG2002|consen 205 IGHCFWKLGMSEKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYF 282 (1018)
T ss_pred hhhHHHhccchhhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhh
Confidence 457788999999999999999998653 455554444433333 35777888888877765 7888999999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 004744 253 DHKIDSAKMFLCEMEQKGVYP--DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAK 330 (732)
Q Consensus 253 ~g~~~~A~~~~~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 330 (732)
.|+++.+..+.+.+......- -..+|..+..+|...|++++|...|.+.......-.+..+--|...|.+.|+++.+.
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESK 362 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHH
Confidence 999999999999998763211 134578899999999999999999999887643322455667788999999999999
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHcCC----CHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004744 331 EVLDEMLQMGLSPDTATYNTLLVESCRKE----NMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREM 406 (732)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~ 406 (732)
..|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+.+..-+.. +..|..+
T Consensus 363 ~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A 439 (1018)
T KOG2002|consen 363 FCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNA 439 (1018)
T ss_pred HHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHH
Confidence 9999999863 445567777777777765 5678888888887764 3377888888877766554444 7776654
Q ss_pred H----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCcC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 004744 407 K----SAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEK---GCVMD------VVTYNTILNGLCRAKMLTEADDLF 473 (732)
Q Consensus 407 ~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~------~~~~~~li~~~~~~~~~~~A~~~~ 473 (732)
. ..+..+.+...|.+...+...|.+++|...|...... ...+| ..+-..+...+-..++.+.|.+.|
T Consensus 440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3 4555678889999999999999999999999988765 12222 223445666677788999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CC
Q 004744 474 NEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRK-IS 552 (732)
Q Consensus 474 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~ 552 (732)
..+.+..+. -+..|..+.......+...+|...++.....+ ..++..++.+.+.+.+..++..|.+-|..+.+.- ..
T Consensus 520 k~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 520 KSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 999987432 23345555544445678999999999988753 3366677777888999999999999777776542 22
Q ss_pred CCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004744 553 PNYISYGILINGYCS------------MGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEG 620 (732)
Q Consensus 553 ~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (732)
+|..+.-+|.+.|.+ .+..++|+++|.+.++.. |.|...-|.+.-.++..|++.+|..+|.+..+..
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 577777777776543 245788999999999874 7788888899999999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HH
Q 004744 621 VDPDSISYNTLINGFVREENMDKAFALVSKMENQ-GLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-R-ST 697 (732)
Q Consensus 621 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~-~~ 697 (732)
. ....+|-.+.++|...|++..|+++|+...+. +...+..+...|..++.+.|.+.+|...+..+.. ..|. . ..
T Consensus 677 ~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~ 753 (1018)
T KOG2002|consen 677 S-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVK 753 (1018)
T ss_pred h-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHH
Confidence 3 34567889999999999999999999987763 3344677889999999999999999999999988 5663 2 33
Q ss_pred HHHHH------------------HHHHhcCCHHHHHHHHHHHHHCC
Q 004744 698 YTTLI------------------NGHVSQNNLKEAFRFHDEMLQRG 725 (732)
Q Consensus 698 ~~~l~------------------~~~~~~g~~~~A~~~~~~m~~~g 725 (732)
++..+ ......+..++|.++|.+|...+
T Consensus 754 FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 754 FNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33332 22234456788888888887654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1.7e-24 Score=213.59 Aligned_cols=389 Identities=14% Similarity=0.156 Sum_probs=250.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHh-HHHHHHH
Q 004744 310 VFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIV-SFSTLIG 388 (732)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~l~~ 388 (732)
..+|..+...+-..|++++|+..++.+++.. +.....|..+..++...|+.+.|.+.|.+.++. .|+.. ..+.+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 3344444444444444444444444444432 112334444444444444444444444444432 12211 1222223
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 004744 389 IFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTE 468 (732)
Q Consensus 389 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 468 (732)
.+-..|++++|...|.+..+... -=...|+.|...+-..|++..|+..|++.++.++. -...|-.|...|...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchH
Confidence 33334444444444444443311 01234444444555555555555555555544322 23445556666666667777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 469 ADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMIS 548 (732)
Q Consensus 469 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 548 (732)
|...|.......+. ..+.+..+...|..+|.+|.|+..|++.++.... =...|+.|..++-..|++.+|...|.+.+.
T Consensus 271 Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 77777666654332 4556667777777778888888888777765322 346777888888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHH
Q 004744 549 RKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD-SIS 627 (732)
Q Consensus 549 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~ 627 (732)
... ....+.+.|.+.|...|++++|..+|....+-. +.=....+.+...|-+.|++++|+..|++.+. +.|+ ...
T Consensus 349 l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda 424 (966)
T KOG4626|consen 349 LCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADA 424 (966)
T ss_pred hCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHH
Confidence 632 255677788888888889999998888887652 33356788888899999999999999998887 6676 568
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 004744 628 YNTLINGFVREENMDKAFALVSKMENQGLVPDV-ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR-STYTTLINGH 705 (732)
Q Consensus 628 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~ 705 (732)
|+.+...|-..|+++.|++.+.+++. +.|.. ..++.|.+.|...|++.+|+.-++++++ ++||. ..|-.++.++
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 88999999999999999999999998 66764 4788999999999999999999999999 88984 7888888877
Q ss_pred HhcCCHHH
Q 004744 706 VSQNNLKE 713 (732)
Q Consensus 706 ~~~g~~~~ 713 (732)
.-..+|.+
T Consensus 501 q~vcdw~D 508 (966)
T KOG4626|consen 501 QIVCDWTD 508 (966)
T ss_pred HHHhcccc
Confidence 76666655
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=7.7e-24 Score=209.06 Aligned_cols=435 Identities=15% Similarity=0.099 Sum_probs=362.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 004744 278 YNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCR 357 (732)
Q Consensus 278 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 357 (732)
...|.+-..+.|++++|++.-...-..+. .+....-.+-..+.+..+.+.....-....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 45567777888999999987665544432 233444444556777777776666555555432 4456789999999999
Q ss_pred CCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHH
Q 004744 358 KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLY-TIIINGYCRNGFVLEALK 436 (732)
Q Consensus 358 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~ 436 (732)
.|++++|+..++.+++...+ .+..|..+..++...|+.+.|.+.|.+..+. .|+.... +.+.......|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999987543 7889999999999999999999999998875 4555433 345555666899999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004744 437 MRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSI 516 (732)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 516 (732)
.+.+.++..+. =.+.|..|...+-.+|+...|+..|++..+.++. -...|..|...|...+.+++|+..|.+......
T Consensus 206 cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 99998886443 4577999999999999999999999999987543 356899999999999999999999999887633
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004744 517 KPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTI 596 (732)
Q Consensus 517 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 596 (732)
.....+..+...|...|.+|-|+..|++.++..+. -...|+.|.+++...|++.+|.+.|++.+... +......+.+
T Consensus 284 -n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 284 -NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred -cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 25667777888899999999999999999987432 56789999999999999999999999999873 5557889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 004744 597 IKGYCRSGDASKADEFLSKMVSEGVDPD-SISYNTLINGFVREENMDKAFALVSKMENQGLVPDV-ITYNVILTGFCRQG 674 (732)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g 674 (732)
...|...|.+++|..+|.+..+ +.|. ....+.|...|-..|++++|+..+++++. +.|+. ..|+.++..|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 9999999999999999999987 4555 56789999999999999999999999998 88986 58999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC
Q 004744 675 RMHDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEMLQRGFVPDD 730 (732)
Q Consensus 675 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 730 (732)
+++.|.+.+.+++. +.|. ...++.|..+|..+|+..+|+.-+++.+ .++||.
T Consensus 437 ~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDf 489 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDF 489 (966)
T ss_pred hHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCC
Confidence 99999999999999 8897 5899999999999999999999999998 566663
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.3e-20 Score=196.58 Aligned_cols=561 Identities=13% Similarity=0.061 Sum_probs=418.0
Q ss_pred ChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHH
Q 004744 133 RISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLL 212 (732)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 212 (732)
+++.|...|...++.+ ++|.-.+-.-.......|++..|+.+|..++..++..-+...-.+.
T Consensus 145 ~~~~A~a~F~~Vl~~s------------------p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig 206 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQS------------------PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG 206 (1018)
T ss_pred cHHHHHHHHHHHHhhC------------------CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh
Confidence 3577777777776543 3333333333344456789999999999988765443333334445
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004744 213 GGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKD---HKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREG 289 (732)
Q Consensus 213 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 289 (732)
..+++.|+.+.|+..|.++.+.+ |.++.++..|.-.-... ..+..|...+...-..... |+++.+.|...|.-.|
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKK 284 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcc
Confidence 67789999999999999999875 34444554444333333 3355677777776665433 7788899999999999
Q ss_pred CHHHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HhHHHHHHHHHcCCCHhHHH
Q 004744 290 FLEEAFQLMNSMSGKGLK--PGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDT--ATYNTLLVESCRKENMSEAE 365 (732)
Q Consensus 290 ~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~ 365 (732)
+++.+..+...+...... .-...|-.+.++|...|++++|...|.+..+. .+|. ..+--|...|.+.|+++.+.
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESK 362 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHH
Confidence 999999999988765311 12345888999999999999999999888875 3444 44556789999999999999
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhCC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004744 366 EIFCEMSRRGVAPDIVSFSTLIGIFSRNG----QLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEM 441 (732)
Q Consensus 366 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 441 (732)
..|+.+.+... .+..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+-...-+.. +..+...
T Consensus 363 ~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A 439 (1018)
T KOG2002|consen 363 FCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNA 439 (1018)
T ss_pred HHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHH
Confidence 99999988642 36677788888887775 5678888888877653 4477788887777765554443 6666554
Q ss_pred H----HCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHH
Q 004744 442 L----EKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLER---GVFPDF------YTFTTLIHGHCKDGNMNKALNLF 508 (732)
Q Consensus 442 ~----~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~ 508 (732)
. ..+..+.+...|.+...+...|++++|...|...... ...+|. .+-..+....-..++.+.|.+.|
T Consensus 440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3 4555688999999999999999999999999998765 112222 23445666777788999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Q 004744 509 DIMTQKSIKPD-IVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKG-I 586 (732)
Q Consensus 509 ~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~ 586 (732)
..+++.. |. +..|..++-+....+...+|...++...... ..++..++.+.+.+.+...+..|.+-|+...+.- .
T Consensus 520 k~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 520 KSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST 596 (1018)
T ss_pred HHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence 9999862 33 2333334333334577889999999988764 4477788888889999999999999887776542 2
Q ss_pred CCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 587 KPTLVSCNTIIKGYCR------------SGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQ 654 (732)
Q Consensus 587 ~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 654 (732)
.+|..+..+|...|.+ .+..++|+++|.+.++.. +-|...-|.+.-.++..|++.+|..+|.+..+.
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 3677777777776643 245788999999998854 346777888888999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 655 GLVPDVITYNVILTGFCRQGRMHDSELILWRMIEK-GLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 655 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
. .-+..+|..++.+|..+|++..|++.|+...++ +-.-+......|.+++.+.|++.+|.+.+...+.
T Consensus 676 ~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 676 T-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred H-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3 335568999999999999999999999998874 3233678899999999999999999999988874
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=7.4e-20 Score=202.03 Aligned_cols=430 Identities=13% Similarity=0.006 Sum_probs=303.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 004744 241 YTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGL 320 (732)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 320 (732)
..+....+.+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++..++.+.. +..+|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 45667788999999999999999999876 567888999999999999999999999999887433 677899999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHH
Q 004744 321 CKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRAL 400 (732)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (732)
...|++++|+.-|......+-..+. ....++..+.. ..+........+.. +++...+..+...+ .....+.+.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcch
Confidence 9999999999988877654322222 22222222222 22333333333322 11222333333222 221222222
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 401 MYFREMKSAGLVPDN-VLYTIIING---YCRNGFVLEALKMRDEMLEKGC--VMDVVTYNTILNGLCRAKMLTEADDLFN 474 (732)
Q Consensus 401 ~l~~~~~~~~~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~ 474 (732)
.-+.+..+. .+.. ..+..+... ....+++++|++.|++.++.+. +.....++.+...+...|++++|+..|+
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 212211111 1111 111111111 1234688999999999987641 2345678888888889999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004744 475 EMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPN 554 (732)
Q Consensus 475 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 554 (732)
+.++..+. +...|..+...+...|++++|...|+.+++... .+...+..+...+...|++++|...|++.++..+ .+
T Consensus 356 kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~ 432 (615)
T TIGR00990 356 KSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DF 432 (615)
T ss_pred HHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cC
Confidence 98887543 466788888888999999999999999887643 3677888888899999999999999999988743 36
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HH
Q 004744 555 YISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSI------SY 628 (732)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~ 628 (732)
...+..+...+.+.|++++|+..|++.++. .+.+...++.+...+...|++++|++.|++.+......+.. .+
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 677788888899999999999999998876 35567888888999999999999999999988753221111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 629 NTLINGFVREENMDKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 629 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
+..+..+...|++++|.++++++.. +.|+ ...+..++..+.+.|++++|..+|+++.+
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2222334446899999999999887 3454 45688889999999999999999999987
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2e-21 Score=203.85 Aligned_cols=297 Identities=13% Similarity=0.091 Sum_probs=139.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHH
Q 004744 427 RNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPD---FYTFTTLIHGHCKDGNMNK 503 (732)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 503 (732)
..|++++|+..|.++.+.++. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 334444444444444433221 233344444444444444444444444433221111 1233444444444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 504 ALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNY----ISYGILINGYCSMGHVTEAFRLWY 579 (732)
Q Consensus 504 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~ 579 (732)
|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444444444331 123344444444455555555555555544443222111 123334444555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004744 580 EMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD 659 (732)
Q Consensus 580 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 659 (732)
++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+ ..|+
T Consensus 205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p~ 281 (389)
T PRK11788 205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--EYPG 281 (389)
T ss_pred HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 555432 2234444555555555555555555555555432111123445555555555566666665555555 2344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCC
Q 004744 660 VITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVS---QNNLKEAFRFHDEMLQRGFVPDD 730 (732)
Q Consensus 660 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~pd~ 730 (732)
...+..++..+.+.|++++|..+++++.+ ..|+...+..++..+.. .|+.+++...+++|+++++.||.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 44445555555555666666666655555 44555555555544443 33555556556655555555543
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=3.9e-19 Score=196.33 Aligned_cols=430 Identities=12% Similarity=0.011 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004744 172 IFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALC 251 (732)
Q Consensus 172 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (732)
.+..++..|.+.|++++|+..|+++++.. |+...|..+..+|.+.|++++|++.+..+++.+ +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 35566777777888888888888777653 456667777777777788888887777777654 455667777777777
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 004744 252 KDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKE 331 (732)
Q Consensus 252 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 331 (732)
..|++++|...|......+...+.. ...++..+.. ..+........+.. +++...+..+.. |........+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 7777777777776655442211211 1111111111 11222222222221 112222222222 211111111111
Q ss_pred HHHHHHHCCCCCCH-HhHHHHHHH---HHcCCCHhHHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhCCCHHHHHHHHHH
Q 004744 332 VLDEMLQMGLSPDT-ATYNTLLVE---SCRKENMSEAEEIFCEMSRRG-VAP-DIVSFSTLIGIFSRNGQLDRALMYFRE 405 (732)
Q Consensus 332 ~~~~~~~~g~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~g-~~~-~~~~~~~l~~~~~~~g~~~~A~~l~~~ 405 (732)
-+.+..+. .++. ..+..+... ....+++++|.+.|++..+.+ ..| ....|+.+...
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~---------------- 340 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTF---------------- 340 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH----------------
Confidence 11111110 0100 000001000 011234445555555444432 111 22334444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 406 MKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDF 485 (732)
Q Consensus 406 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 485 (732)
+...|++++|+..+++.++..+. +...|..+...+...|++++|...|+++++..+. +.
T Consensus 341 -------------------~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~ 399 (615)
T TIGR00990 341 -------------------KCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DP 399 (615)
T ss_pred -------------------HHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH
Confidence 44445555555554444443221 2334444444455555555555555555444322 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004744 486 YTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGY 565 (732)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 565 (732)
.++..+...+...|++++|+..|++.++... .+...+..+...+.+.|++++|+..|++.++.. +.+...++.+...+
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~ 477 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELL 477 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 4455555555555555555555555554422 134444445555555555555555555555432 22445555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004744 566 CSMGHVTEAFRLWYEMVGKGIKPTL------VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREE 639 (732)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 639 (732)
...|++++|++.|++.+......+. ..++..+..+...|++++|.+++++.+... +.+...+..++..+.+.|
T Consensus 478 ~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 478 LDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQG 556 (615)
T ss_pred HHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcc
Confidence 6666666666666655543211000 111222222334567777777777766543 123345666677777777
Q ss_pred CHHHHHHHHHHHHH
Q 004744 640 NMDKAFALVSKMEN 653 (732)
Q Consensus 640 ~~~~A~~~~~~~~~ 653 (732)
++++|+++|+++.+
T Consensus 557 ~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 557 DVDEALKLFERAAE 570 (615)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777777766
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1e-20 Score=198.49 Aligned_cols=302 Identities=13% Similarity=0.080 Sum_probs=193.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc
Q 004744 177 IRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELN---VYTLNIMVNALCKD 253 (732)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 253 (732)
+..+...|++++|+..|+++.+.++. +..++..+...+.+.|++++|..+++.+++....++ ..++..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 44567788899999999999887654 667888888888888888888888888876432111 24567777888888
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCChhHH
Q 004744 254 HKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGV----FTYNSLINGLCKKGRCDRA 329 (732)
Q Consensus 254 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A 329 (732)
|++++|..+|+++.+.. .++..+++.++..+.+.|++++|.+.++.+...+..+.. ..+..++..+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888887653 235667788888888888888888888887765433221 2344555666667777777
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004744 330 KEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSA 409 (732)
Q Consensus 330 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 409 (732)
...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777766543 22344555666666666666666666666665432222344556666666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCH
Q 004744 410 GLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCR---AKMLTEADDLFNEMLERGVFPDF 485 (732)
Q Consensus 410 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~~~~~~~~~~~ 485 (732)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.+.++.|++
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 234344455556666666666666666655554 3455555555554443 33555666666666555444433
No 21
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=2.4e-16 Score=157.59 Aligned_cols=594 Identities=11% Similarity=0.065 Sum_probs=459.7
Q ss_pred ChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChh-----------HHHHhhh-hhc
Q 004744 96 NLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRL-----------EIVDSFV-STY 163 (732)
Q Consensus 96 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~l~-~~~ 163 (732)
+...|+.++..+...+|. .+..|-+-.+.=-..|.++.|..++.+-.+....+.+ +....++ ...
T Consensus 266 DikKaR~llKSvretnP~---hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Av 342 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPK---HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAV 342 (913)
T ss_pred HHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHH
Confidence 556678888777776664 4567777666667788888888777665443332221 1111111 111
Q ss_pred CCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 004744 164 SPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTL 243 (732)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 243 (732)
..+|.++..|-.-+.. ..+...=.+|++++++.-+. ++..|-. -+.....++|+-++.++++. ++.+...|
T Consensus 343 r~~P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~iP~-sv~LWKa----AVelE~~~darilL~rAvec-cp~s~dLw 413 (913)
T KOG0495|consen 343 RFLPTSVRLWLKAADL---ESDTKNKKRVLRKALEHIPR-SVRLWKA----AVELEEPEDARILLERAVEC-CPQSMDLW 413 (913)
T ss_pred HhCCCChhhhhhHHhh---hhHHHHHHHHHHHHHHhCCc-hHHHHHH----HHhccChHHHHHHHHHHHHh-ccchHHHH
Confidence 3344555555433322 22334445678888877544 5555544 34456777799999998875 35555555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----hhCCCCCCHhhHHHHHHH
Q 004744 244 NIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSM----SGKGLKPGVFTYNSLING 319 (732)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~ 319 (732)
. +|.+..-++.|.+++....+. ++-+...|.+-...--..|+.+...+++++- ...|+..+...|..=...
T Consensus 414 l----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 414 L----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEA 488 (913)
T ss_pred H----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHH
Confidence 4 556678889999999998886 4447788888777777889999998887764 456888888899988889
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHH
Q 004744 320 LCKKGRCDRAKEVLDEMLQMGLSPD--TATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLD 397 (732)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 397 (732)
|-..|..-.+..+....+..|+.-. ..+|+.-...|.+.+.++-|..+|...++.- +-+...|...+..--..|..+
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHH
Confidence 9999999999999999998887543 3488888899999999999999999988763 336788888888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 398 RALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEML 477 (732)
Q Consensus 398 ~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 477 (732)
.-..+|+++... ++-....|......+-..|++..|..++....+..+. +...|-.-+.....+.+++.|..+|.+..
T Consensus 568 sl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 999999999876 3445667888888888899999999999999988666 78889999999999999999999999887
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004744 478 ERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYIS 557 (732)
Q Consensus 478 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 557 (732)
.. .|....|.--+..-...++.++|++++++.++. ++.-...|..+.+.+-+.++++.|.+.|..-.+. .+.....
T Consensus 646 ~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipL 721 (913)
T KOG0495|consen 646 SI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPL 721 (913)
T ss_pred cc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchH
Confidence 65 557777877777777889999999999999876 4434567888888999999999999999877665 4446677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004744 558 YGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVR 637 (732)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 637 (732)
|-.|...--+.|.+-.|..+++....++ |.+...|...+.+-.+.|+.+.|..+..++++. .+.+...|..-|.+.-+
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence 8888888888899999999999998875 778899999999999999999999999998884 45566778888887777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 004744 638 EENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR-STYTTLINGHVSQNNLKEAFR 716 (732)
Q Consensus 638 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~ 716 (732)
.++-......++ + ...|+.+...+...+....++++|...|.++++ +.||. .+|..+...+.+.|.-++-.+
T Consensus 800 ~~rkTks~DALk---k--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 800 PQRKTKSIDALK---K--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred cccchHHHHHHH---h--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHH
Confidence 777444444333 3 566888888888888888999999999999999 77865 788889999999999888888
Q ss_pred HHHHHH
Q 004744 717 FHDEML 722 (732)
Q Consensus 717 ~~~~m~ 722 (732)
++++..
T Consensus 873 v~~~c~ 878 (913)
T KOG0495|consen 873 VLKKCE 878 (913)
T ss_pred HHHHHh
Confidence 888876
No 22
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=3.1e-17 Score=170.57 Aligned_cols=585 Identities=12% Similarity=0.087 Sum_probs=376.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004744 121 LSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKG 200 (732)
Q Consensus 121 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 200 (732)
.-..+..+...|++++|..++.++++. .+.++..|-.|+..|-+.|+.++++..+-.+...+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkq------------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~ 203 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQ------------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN 203 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh------------------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 334444555569999999999999954 56778999999999999999999999999888888
Q ss_pred CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-
Q 004744 201 ICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYN- 279 (732)
Q Consensus 201 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~- 279 (732)
+. |..-|..+.....+.|.+++|.-+|.++++.. |++....---...|-+.|+...|...|.++....+..|..-..
T Consensus 204 p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 204 PK-DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred CC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 77 77999999999999999999999999999986 5555544455677889999999999999999885422222222
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH-------
Q 004744 280 ---TLINAYCREGFLEEAFQLMNSMSGKG-LKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATY------- 348 (732)
Q Consensus 280 ---~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~------- 348 (732)
.+++.|...++-+.|.+.++.....+ -.-+...++.++..|.+...++.|......+......+|..-+
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 34566777888899999998887632 2235667889999999999999999988887762222222111
Q ss_pred ---------------H----HHHHHHHcCCCHhHHHHHHHHHHhCC--CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004744 349 ---------------N----TLLVESCRKENMSEAEEIFCEMSRRG--VAPDIVSFSTLIGIFSRNGQLDRALMYFREMK 407 (732)
Q Consensus 349 ---------------~----~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~ 407 (732)
. -+.-++......+....+.....+.+ +.-++..|.-+..+|...|++.+|+.+|..+.
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred ccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 1 12233444444455555555555555 33356778889999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------c
Q 004744 408 SAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLE--------R 479 (732)
Q Consensus 408 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~ 479 (732)
.....-+...|-.+..+|...|..++|.+.++..+...+. +...--.|...+.+.|+.++|.+.+..+.. .
T Consensus 442 ~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~ 520 (895)
T KOG2076|consen 442 NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEAC 520 (895)
T ss_pred cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhc
Confidence 8766667789999999999999999999999999887544 555666777888999999999999988642 2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------------CCCCHH----------------
Q 004744 480 GVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKS----------------------IKPDIV---------------- 521 (732)
Q Consensus 480 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------------------~~~~~~---------------- 521 (732)
+..|+..........+.+.|+.++=+.+-..|+... ......
T Consensus 521 a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 600 (895)
T KOG2076|consen 521 AWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDN 600 (895)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchH
Confidence 233444455556666777777766554444433210 000001
Q ss_pred ---------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHhcC
Q 004744 522 ---------------------------TYNTLIDGFCKVGEMEKANKLWADMISRKI--SPNY---ISYGILINGYCSMG 569 (732)
Q Consensus 522 ---------------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~~~~li~~~~~~g 569 (732)
.+.-++..+++.+++++|+.+...+..... .++. ..-...+.+.+..+
T Consensus 601 ~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~ 680 (895)
T KOG2076|consen 601 VMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYAR 680 (895)
T ss_pred HhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcC
Confidence 112233344444555555554444443210 0011 11122333334445
Q ss_pred CHHHHHHHHHHHHhC-CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004744 570 HVTEAFRLWYEMVGK-GI---KPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAF 645 (732)
Q Consensus 570 ~~~~A~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 645 (732)
++..|...++.|+.. +. +--...||...+...+.|+-.--..++..+.......+........+.+..++.+..|+
T Consensus 681 d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al 760 (895)
T KOG2076|consen 681 DPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHAL 760 (895)
T ss_pred CHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHH
Confidence 555555555544433 00 11122333333333333332222222222221111111111111223344567788899
Q ss_pred HHHHHHHHCCCCCCHHHHH-HHHHHHHh----------cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 004744 646 ALVSKMENQGLVPDVITYN-VILTGFCR----------QGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKE 713 (732)
Q Consensus 646 ~~~~~~~~~g~~p~~~~~~-~l~~~~~~----------~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 713 (732)
..+-++.. ..||...++ +++.++.+ +-.+-++..++++..+....- ...++..++++|-..|-..-
T Consensus 761 ~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~L 838 (895)
T KOG2076|consen 761 QEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHL 838 (895)
T ss_pred HHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHH
Confidence 88888877 467644443 33333432 223445667776666621221 35788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCC
Q 004744 714 AFRFHDEMLQRGFVPDD 730 (732)
Q Consensus 714 A~~~~~~m~~~g~~pd~ 730 (732)
|..++++.+ ++.|-.
T Consensus 839 A~~YYekvL--~~~p~~ 853 (895)
T KOG2076|consen 839 AVSYYEKVL--EVSPKD 853 (895)
T ss_pred HHHHHHHHh--CCCccc
Confidence 999999999 555433
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.2e-18 Score=191.37 Aligned_cols=333 Identities=12% Similarity=0.035 Sum_probs=277.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCc
Q 004744 123 AMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGIC 202 (732)
Q Consensus 123 ~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (732)
-.+..+.+.|++++|..++...+.. .+.++..+..++.++...|++++|+..|+++.+..+.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~------------------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~ 108 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLT------------------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC 108 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHh------------------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC
Confidence 3455667899999999999988743 4455677777888888999999999999999998776
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004744 203 FSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLI 282 (732)
Q Consensus 203 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li 282 (732)
+...+..+...+.+.|++++|...|+++++.. +.+...+..++..+...|++++|...++.+...... +...+..+
T Consensus 109 -~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~- 184 (656)
T PRK15174 109 -QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC- 184 (656)
T ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-
Confidence 78889999999999999999999999999864 667788999999999999999999999998876443 33344333
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHh
Q 004744 283 NAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMS 362 (732)
Q Consensus 283 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 362 (732)
..+...|++++|...++.+......++...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 185 ~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 185 LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSR 263 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCch
Confidence 3478899999999999998876544455566666788999999999999999999875 456778888999999999998
Q ss_pred H----HHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004744 363 E----AEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMR 438 (732)
Q Consensus 363 ~----A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 438 (732)
+ |...|+++.+.... +...+..+...+.+.|++++|...+++..+.... +...+..+...+.+.|++++|+..+
T Consensus 264 eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 264 EAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred hhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6 89999999886433 7788999999999999999999999999886433 5567788899999999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004744 439 DEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGV 481 (732)
Q Consensus 439 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 481 (732)
+.+.+.++. +...+..+...+...|+.++|...|++..+..+
T Consensus 342 ~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 342 VQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 999987543 334455567788999999999999999988743
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=5.8e-18 Score=186.09 Aligned_cols=336 Identities=10% Similarity=-0.006 Sum_probs=269.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004744 171 LIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNAL 250 (732)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (732)
.-...++..+.++|++++|+.+++..+...+. +...+..++.++...|++++|.+.|+++++.. |.+...+..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 33455677888999999999999999988776 56667777788888999999999999998875 66778888889999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 004744 251 CKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAK 330 (732)
Q Consensus 251 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 330 (732)
...|++++|...++++.+.... +...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHH
Confidence 9999999999999999887432 5678888999999999999999999988766433 33344333 3478899999999
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHH----HHHHHHHH
Q 004744 331 EVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDR----ALMYFREM 406 (732)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~----A~~l~~~~ 406 (732)
..++.+++....++...+..+...+.+.|++++|.+.++++.+.... +...+..+...+...|++++ |...|++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 99999887643344455556677888999999999999999877533 67788889999999999885 78899988
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004744 407 KSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFY 486 (732)
Q Consensus 407 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 486 (732)
.+... .+...+..+...+.+.|++++|+..+++..+..+. +...+..+...+.+.|++++|...|+.+.+.++. +..
T Consensus 277 l~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~ 353 (656)
T PRK15174 277 LQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSK 353 (656)
T ss_pred HhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chH
Confidence 87643 35678888899999999999999999998887654 6677778888899999999999999988876433 233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004744 487 TFTTLIHGHCKDGNMNKALNLFDIMTQKS 515 (732)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (732)
.+..+...+...|+.++|...|+...+..
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34445677888999999999999888763
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=7.7e-18 Score=189.28 Aligned_cols=409 Identities=9% Similarity=0.014 Sum_probs=249.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004744 274 DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLV 353 (732)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 353 (732)
+.....-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..++++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33344445566677889999998888887622 3355568888888888899999999998888763 345566777888
Q ss_pred HHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004744 354 ESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLE 433 (732)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 433 (732)
.+...|+.++|...++++.+... .+.. +..+..++...|+.++|+..++++.+.... +...+..+...+...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 88888899999988888877632 2555 778888888888889998888888876433 45556667777778888888
Q ss_pred HHHHHHHHHHCCCCcCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHH
Q 004744 434 ALKMRDEMLEKGCVMDV------VTYNTILNGLC-----RAKML---TEADDLFNEMLER-GVFPDFY-TF----TTLIH 493 (732)
Q Consensus 434 A~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~~~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~li~ 493 (732)
|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 8888876554 1221 01111222211 11223 5666666666643 1122211 11 11123
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcC
Q 004744 494 GHCKDGNMNKALNLFDIMTQKSIK-PDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISP---NYISYGILINGYCSMG 569 (732)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g 569 (732)
.+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 344567777777777776665422 221 11224556777777777777777766542211 1233445555666777
Q ss_pred CHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004744 570 HVTEAFRLWYEMVGKGI-----------KPT---LVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGF 635 (732)
Q Consensus 570 ~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 635 (732)
++++|...++.+..... .|+ ...+..+...+...|+.++|++.++++.... +.+...+..++..+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 77777777777665420 012 1233445555666666666666666666542 22355566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004744 636 VREENMDKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRS 696 (732)
Q Consensus 636 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 696 (732)
...|++++|++.++++.+ ..|+ ...+...+..+...|++++|+..++++++ ..|+..
T Consensus 404 ~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~ 461 (765)
T PRK10049 404 QARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDP 461 (765)
T ss_pred HhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCH
Confidence 666666666666666666 3454 34445555556666666666666666666 555443
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.2e-17 Score=187.89 Aligned_cols=405 Identities=10% Similarity=0.015 Sum_probs=248.4
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 169 NSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVN 248 (732)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (732)
++....-.+......|+.++|++++.+..... ..+...+..+..++.+.|++++|.++|+++++.. |.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34444455677888999999999999998643 3366779999999999999999999999998864 666777888889
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004744 249 ALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDR 328 (732)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 328 (732)
.+...|++++|...++++.+..+. +.. +..+...+...|+.++|+..++++.+..+. +...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 999999999999999999887432 555 888899999999999999999999987544 66667778888888999999
Q ss_pred HHHHHHHHHHCCCCCCH------HhHHHHHHHHH-----cCCCH---hHHHHHHHHHHhC-CCCCCHh-HH----HHHHH
Q 004744 329 AKEVLDEMLQMGLSPDT------ATYNTLLVESC-----RKENM---SEAEEIFCEMSRR-GVAPDIV-SF----STLIG 388 (732)
Q Consensus 329 A~~~~~~~~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-g~~~~~~-~~----~~l~~ 388 (732)
|+..++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9998887654 2331 01112222221 11223 5666666666643 1122211 11 11123
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHhcC
Q 004744 389 IFSRNGQLDRALMYFREMKSAGLV-PDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVM---DVVTYNTILNGLCRAK 464 (732)
Q Consensus 389 ~~~~~g~~~~A~~l~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~ 464 (732)
.+...|++++|+..|+++.+.+.. |+. ....+...|...|++++|+..++++.+..... .......+..++.+.|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 345567777777777777665422 221 12224556677777777777777766543221 1233444555566677
Q ss_pred CHHHHHHHHHHHHHcCCC-----------CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004744 465 MLTEADDLFNEMLERGVF-----------PD---FYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGF 530 (732)
Q Consensus 465 ~~~~A~~~~~~~~~~~~~-----------~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 530 (732)
++++|..+++.+.+..+. |+ ...+..+...+...|++++|+.+++++.... +.+...+..+...+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 777777777766654211 11 1122334444444555555555555544432 22344444444455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004744 531 CKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGK 584 (732)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 584 (732)
...|++++|++.+++.++.. +.+...+...+..+...|++++|..+++++++.
T Consensus 404 ~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 55555555555555544432 112333334444444445555555555555443
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=1.2e-16 Score=175.60 Aligned_cols=434 Identities=13% Similarity=0.099 Sum_probs=274.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 004744 247 VNALCKDHKIDSAKMFLCEMEQKGVYPDT--VTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKG 324 (732)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 324 (732)
+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++..... .........+...|...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcC
Confidence 345678899999999999998874 443 234 78888888999999999999988321 112333334466888889
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH
Q 004744 325 RCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFR 404 (732)
Q Consensus 325 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~ 404 (732)
++++|+++++++++.. +.+...+..++..+...++.++|++.+.++... .|+...+..++..+...++..+|++.++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999999875 345667777888889999999999999998876 3455555555555555667767999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHH----HHHHHhcC---------C---HHH
Q 004744 405 EMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTI----LNGLCRAK---------M---LTE 468 (732)
Q Consensus 405 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~---------~---~~~ 468 (732)
++.+.. +.+...+..+..++.+.|-...|+++..+-... + +...+.-+ +.-..+.. + .+.
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 998874 335677788888889999888888776653321 1 11111111 11112111 1 233
Q ss_pred HHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004744 469 ADDLFNEMLER-GVFPDF-Y----TFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKL 542 (732)
Q Consensus 469 A~~~~~~~~~~-~~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 542 (732)
|+.-++.+... +..|.. . +..-.+-++...|++.++++.|+.+...+.+....+-.++.++|...+++++|..+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 44444444431 111221 1 11223445566777777777777777665543445666677777777777777777
Q ss_pred HHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CC--CH-HHHHHHHHHHHHc
Q 004744 543 WADMISRK-----ISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGI-----------KP--TL-VSCNTIIKGYCRS 603 (732)
Q Consensus 543 ~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~--~~-~~~~~l~~~~~~~ 603 (732)
|.++.... .+++......|.-+|...+++++|..+++++.+... .| |- .....++..+...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~ 429 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL 429 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 77765542 122333345666677777777777777777765310 01 11 1222344456666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004744 604 GDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDSELI 682 (732)
Q Consensus 604 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 682 (732)
|+..+|++.++++.... +-|......+.+.+...|.+.+|.+.++.+.. +.|+ ..+....+.++...|++++|..+
T Consensus 430 gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 77777777777776543 33566666677777777777777777765555 3454 34555666666666777777777
Q ss_pred HHHHHHcCCCCCHH
Q 004744 683 LWRMIEKGLNPDRS 696 (732)
Q Consensus 683 ~~~~~~~g~~p~~~ 696 (732)
.+++.+ ..|+..
T Consensus 507 ~~~l~~--~~Pe~~ 518 (822)
T PRK14574 507 TDDVIS--RSPEDI 518 (822)
T ss_pred HHHHHh--hCCCch
Confidence 777766 556543
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=6.7e-16 Score=169.85 Aligned_cols=438 Identities=13% Similarity=0.065 Sum_probs=250.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004744 175 LVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDH 254 (732)
Q Consensus 175 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (732)
.-+-...++|+++.|++.|+++.+..+.-....+ .++..+...|+.++|+.++++.+.. .+........++..+...|
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 3344567999999999999999988655212333 8888888999999999999998721 1333444445567888999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 004744 255 KIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLD 334 (732)
Q Consensus 255 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 334 (732)
++++|+++++++.+..+. +...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++
T Consensus 117 dyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 999999999999998654 5667778888999999999999999999876 4455555545445545667767999999
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHH--HHHHHHHHh---------CCC---HHHHH
Q 004744 335 EMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSF--STLIGIFSR---------NGQ---LDRAL 400 (732)
Q Consensus 335 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--~~l~~~~~~---------~g~---~~~A~ 400 (732)
++.+.. +.+...+..+...+.+.|-...|.++..+-... +.+....+ ...+.-.++ .++ .+.|+
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 999874 446677788888999999988888776653321 11111111 000000110 111 22233
Q ss_pred HHHHHHHHC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 401 MYFREMKSA-GLVPDN-VLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLE 478 (732)
Q Consensus 401 ~l~~~~~~~-~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 478 (732)
.-++.+... +..|.. ..|. ...--.+-++...+++.++++.|+.+..
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~-------------------------------~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQ-------------------------------RARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHhhccCCCccchHHH-------------------------------HHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 333333221 111111 1110 0011122234444445555555555544
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 004744 479 RGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKS-----IKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRK--- 550 (732)
Q Consensus 479 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--- 550 (732)
.+.+....+-..+.++|...+++++|..+++.+.... ..++......|.-+|...+++++|..+++++.+..
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 4433233344444555555555555555555443321 11122223344444555555555555555554421
Q ss_pred ----------CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004744 551 ----------ISPNYI-SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSE 619 (732)
Q Consensus 551 ----------~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (732)
..||.. .+..++..+.-.|++.+|.+.++++.... |-|......+...+...|...+|++.++.+...
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 111222 22333444555566666666666665543 555556666666666666666666666444432
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 620 GVDP-DSISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 620 ~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
.| +..+....+..+...|++++|..+.+.+.+
T Consensus 480 --~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 480 --APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred --CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 23 233444555555556666666666666555
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.86 E-value=5.5e-15 Score=148.04 Aligned_cols=560 Identities=11% Similarity=0.030 Sum_probs=434.3
Q ss_pred CChHHHHHHHHHHHHhcCCChhHHHH----------------hhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHH
Q 004744 132 RRISDAQALILRMVRKSGVSRLEIVD----------------SFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRL 195 (732)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 195 (732)
++...|..++.+..+.++..+..++. .+......|+.+..+|---+ +..-.+.|..+.-.
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA~ 340 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVAN 340 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHHH
Confidence 45567888888877666554433211 12222334555555554433 33455666666666
Q ss_pred HHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004744 196 LRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDT 275 (732)
Q Consensus 196 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 275 (732)
+.+..+. ++..|-.-... ..+...=.++++.+++. +|.++..|-..+ ...+.++|+.++.+..+.- ..+.
T Consensus 341 Avr~~P~-Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvecc-p~s~ 410 (913)
T KOG0495|consen 341 AVRFLPT-SVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVECC-PQSM 410 (913)
T ss_pred HHHhCCC-ChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHhc-cchH
Confidence 6665433 44444322221 22344445677777664 577777776544 4577788999999998862 2234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHhHHHH
Q 004744 276 VTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEML----QMGLSPDTATYNTL 351 (732)
Q Consensus 276 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~~~~~~~~~l 351 (732)
..| -+|.+..-|+.|.++++...+. ++.+...|.+-...--..|..+...+++++.+ ..|+..+...|..=
T Consensus 411 dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 411 DLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 444 4566778899999999999875 67789999998888889999999999987754 45888888888888
Q ss_pred HHHHHcCCCHhHHHHHHHHHHhCCCCC--CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004744 352 LVESCRKENMSEAEEIFCEMSRRGVAP--DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNG 429 (732)
Q Consensus 352 i~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g 429 (732)
...+-..|..-.+..+....+..|+.- --.+|..-...|.+.+.++-|..+|....+. .+.+...|...+..--..|
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcC
Confidence 888888999999999999998887753 3468999999999999999999999998876 3446678888777777789
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 430 FVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFD 509 (732)
Q Consensus 430 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 509 (732)
..++-..++++....-+. ....|-.....+-..|+...|..++..+.+..+. +...|..-+..-.....++.|..+|.
T Consensus 565 t~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred cHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHH
Confidence 999999999999987443 6777888888888999999999999999988665 77889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 004744 510 IMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPT 589 (732)
Q Consensus 510 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 589 (732)
+.... .|+...|.--+....-.++.++|.+++++.++. ++.-...|..+...+-+.++++.|.+.|..-.+. .|..
T Consensus 643 kar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ 718 (913)
T KOG0495|consen 643 KARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNS 718 (913)
T ss_pred HHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCC
Confidence 98764 567777777777777889999999999999986 4445567888889999999999999999887776 4667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004744 590 LVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTG 669 (732)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 669 (732)
...|..+.+.-.+.|..-+|+.++++..-.+ +.+...|-..|.+-.+.|..+.|..+..++... ++.+...|..-|..
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWL 796 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHh
Confidence 7888888888899999999999999998765 347888999999999999999999999998875 45566788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 670 FCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQR 724 (732)
Q Consensus 670 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 724 (732)
.-+.++-..+...+++. +-|+.....+...+....+++.|.++|++.++.
T Consensus 797 e~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred ccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 77777755555555544 447788888999999999999999999999853
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=4e-15 Score=155.17 Aligned_cols=601 Identities=12% Similarity=0.083 Sum_probs=391.0
Q ss_pred hccChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHH
Q 004744 93 LRDNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLI 172 (732)
Q Consensus 93 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 172 (732)
.+|+.+.|.+.+..+++..|. .+..|.+|..+|-..|+..++...+.-+... .+.+...
T Consensus 151 arg~~eeA~~i~~EvIkqdp~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL------------------~p~d~e~ 209 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL------------------NPKDYEL 209 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCcc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhc------------------CCCChHH
Confidence 468999999999999988876 5789999999999999999998776555422 3456688
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH----HHHHH
Q 004744 173 FDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTL----NIMVN 248 (732)
Q Consensus 173 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~ 248 (732)
|-.+.....+.|++++|.-.|.++++..+. +....-.-...|-+.|+...|.+-|.++.....+.|-.-. -.+++
T Consensus 210 W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 210 WKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAH 288 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999998766 5555555667889999999999999999886532222222 23456
Q ss_pred HHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhH--------------
Q 004744 249 ALCKDHKIDSAKMFLCEMEQKGV-YPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTY-------------- 313 (732)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------------- 313 (732)
.+...++-+.|.+.++.....+. .-+...++.++..|.+...++.|......+......+|..-|
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 67777888999999988877321 235567889999999999999999988888762222221111
Q ss_pred ------------HHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCC
Q 004744 314 ------------NSLINGLCKKGRCDRAKEVLDEMLQMGL--SPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPD 379 (732)
Q Consensus 314 ------------~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 379 (732)
.-+.-++......+....+.....+..+ .-+...|.-+..+|...|++.+|+.+|..+......-+
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 1222233333333333333333444432 23445677778888888888888888888877655456
Q ss_pred HhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CCCcCHH
Q 004744 380 IVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEK--------GCVMDVV 451 (732)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ 451 (732)
...|-.+..+|...|..++|.+.|+...... +.+...-..|...+-+.|+.++|++.++.+..- +..|+..
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~r 527 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERR 527 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHH
Confidence 6778888888888888888888888877652 123345556666777888888888887775421 1223333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----------------------------------------------------
Q 004744 452 TYNTILNGLCRAKMLTEADDLFNEMLER---------------------------------------------------- 479 (732)
Q Consensus 452 ~~~~li~~~~~~~~~~~A~~~~~~~~~~---------------------------------------------------- 479 (732)
..-.....+.+.|+.++=+..-..|+..
T Consensus 528 i~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~ 607 (895)
T KOG2076|consen 528 ILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALS 607 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhccc
Confidence 3333344455555544432222222110
Q ss_pred -----------CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHH----HHHHHHHHHHhcCCHHHHHH
Q 004744 480 -----------GVFPDF--YTFTTLIHGHCKDGNMNKALNLFDIMTQKSIK-PDIV----TYNTLIDGFCKVGEMEKANK 541 (732)
Q Consensus 480 -----------~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~----~~~~li~~~~~~g~~~~A~~ 541 (732)
|...+. ..+..++..+++.+++++|+.+...+...... .+.. .-...+.+.+..+++..|..
T Consensus 608 d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~ 687 (895)
T KOG2076|consen 608 DGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFS 687 (895)
T ss_pred chhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 000000 12345677888999999999999888765221 1222 22344566778899999999
Q ss_pred HHHHHHHC-CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004744 542 LWADMISR-KI---SPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMV 617 (732)
Q Consensus 542 ~~~~~~~~-~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (732)
.++.|+.. +. +--...|+...+.+.+.++-.--.+.+..........+..............+.+..|+..+-++.
T Consensus 688 ~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~ 767 (895)
T KOG2076|consen 688 YLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF 767 (895)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHH
Confidence 99998865 11 113345665555555555544444444444333211112333233334566788999999887777
Q ss_pred HCCCCCCHHHHHH-HHHHHH----------hcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004744 618 SEGVDPDSISYNT-LINGFV----------REENMDKAFALVSKMENQGLV-PDVITYNVILTGFCRQGRMHDSELILWR 685 (732)
Q Consensus 618 ~~~~~~~~~~~~~-li~~~~----------~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 685 (732)
.. .||....+. ++-++. ++-..-.++.++.+..+.... -...++..++.+|-..|-+.-|..++++
T Consensus 768 ~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYek 845 (895)
T KOG2076|consen 768 RQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEK 845 (895)
T ss_pred Hh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 64 355333332 222222 222345667777666652111 1345667799999999999999999999
Q ss_pred HHHcCCCC---------C----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004744 686 MIEKGLNP---------D----RSTYTTLINGHVSQNNLKEAFRFHDE 720 (732)
Q Consensus 686 ~~~~g~~p---------~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 720 (732)
.++ +.| + ..+-..|.-.|.++|+...|.+++++
T Consensus 846 vL~--~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 846 VLE--VSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HhC--CCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 998 432 1 12334566689999999999999875
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=2.3e-16 Score=150.97 Aligned_cols=477 Identities=13% Similarity=0.103 Sum_probs=305.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHhCCCCCC------HHHH
Q 004744 206 NACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLN-IMVNALCKDHKIDSAKMFLCEMEQKGVYPD------TVTY 278 (732)
Q Consensus 206 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------~~~~ 278 (732)
.....|..-|..+..+.+|+..|+-+++...-|+.-... .+.+.+.+..++.+|+++++-.+.. .|+ ....
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil 279 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHH
Confidence 344445555666666777777777777665555543322 2446667777777777777766654 222 2234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------------H
Q 004744 279 NTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDT------------A 346 (732)
Q Consensus 279 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~------------~ 346 (732)
+.+...+.+.|+++.|+..|+...+. .||..+-..|+-++...|+.++..+.|.+|+.....||. .
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 55555667777788887777777664 456666666666666777777777777777754323322 2
Q ss_pred hHHHHHHH-----HHcCC--CHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHH-HHHHHCCCCC-CHHH
Q 004744 347 TYNTLLVE-----SCRKE--NMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYF-REMKSAGLVP-DNVL 417 (732)
Q Consensus 347 ~~~~li~~-----~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~-~~~~~~~~~~-~~~~ 417 (732)
..+..|.. .-+.. +.++++-.-.+++.--+.|+ +....++. +.++.....+ -...
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~----------------fa~g~dwcle~lk~s~~~~la~dl 421 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD----------------FAAGCDWCLESLKASQHAELAIDL 421 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc----------------hhcccHHHHHHHHHhhhhhhhhhh
Confidence 22221110 00000 01111111111111111111 11111111 1111110000 0000
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004744 418 YTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCR--AKMLTEADDLFNEMLERGVFPDFYTFTTLIHGH 495 (732)
Q Consensus 418 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 495 (732)
-..-...|.+.|+++.|+++++-..++....-...-+.|-..+.- .+++.+|..+-+..+..+- -+......-....
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIA 500 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCcee
Confidence 011233578899999999999888776544334444444333332 4467788887777665421 2333333333444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004744 496 CKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAF 575 (732)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 575 (732)
...|++++|.+.|++.+..+..-....|+ +.-.+-+.|++++|++.|-++... +..+......+.+.|-...+...|+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 56899999999999998763222222222 223467889999999999876543 2237777888899999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004744 576 RLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQG 655 (732)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 655 (732)
+++.+.... ++.|+.++..+...|-+.|+-.+|.+++-.-.. -++-+..+...|...|....-+++|+.+|+++.-
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 999888766 688999999999999999999999998765544 3566888888999999999999999999999887
Q ss_pred CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004744 656 LVPDVITYNVILTGFC-RQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNN 710 (732)
Q Consensus 656 ~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 710 (732)
+.|+..-|..++..|. +.|++.+|..+++....+ ++.|..+..-|++.+...|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 7999999988887664 789999999999998874 55588899999998887775
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=5.1e-15 Score=141.06 Aligned_cols=449 Identities=15% Similarity=0.190 Sum_probs=288.6
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHH--HcCChH-HHHHHHHHHHHcCCCCCHHHHH
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLV--KIGWVD-LAREVYAEVVRSGIELNVYTLN 244 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g~~~-~a~~~~~~~~~~~~~~~~~~~~ 244 (732)
..+..-|.|+.. ..+|.+.++.-+|+.|...|++.+...--.|+..-+ ...+.- .-++.|-.|.+.| ..+..+|
T Consensus 114 ~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW- 190 (625)
T KOG4422|consen 114 LQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW- 190 (625)
T ss_pred hhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-
Confidence 345556666654 567899999999999999998888877766665433 222222 2245555565554 4444444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 004744 245 IMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKG 324 (732)
Q Consensus 245 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 324 (732)
+.|.+.+ -+|+... + +..+|..||.++||.-..+.|.+++++......+.+..+||.+|.+-.-.
T Consensus 191 -------K~G~vAd--L~~E~~P-K----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~- 255 (625)
T KOG4422|consen 191 -------KSGAVAD--LLFETLP-K----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS- 255 (625)
T ss_pred -------ccccHHH--HHHhhcC-C----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh-
Confidence 3344333 3333332 2 66789999999999999999999999998887788899999998764432
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhH----HHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHH-H
Q 004744 325 RCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSE----AEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDR-A 399 (732)
Q Consensus 325 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-A 399 (732)
...+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ |
T Consensus 256 ---~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 256 ---VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred ---ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 237888999988889999999999999999998765 45788889999999999999999999988887644 4
Q ss_pred HHHHHHHHHC----CC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCc---CHHHHHHHHHHHHhcC
Q 004744 400 LMYFREMKSA----GL----VPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKG----CVM---DVVTYNTILNGLCRAK 464 (732)
Q Consensus 400 ~~l~~~~~~~----~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~---~~~~~~~li~~~~~~~ 464 (732)
..++.++... .+ +.|...+...+..|.+..+.+-|.++..-+.... +.+ ....|..+....|+..
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 4455444321 12 2244566677777778888888877766554321 111 2234556677777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 465 MLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWA 544 (732)
Q Consensus 465 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 544 (732)
..+.-...|+.|.-.-.-|+..+...++++..-.|.++-.-+++.+++..|..-.... .++++.
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~ 476 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILM 476 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHH
Confidence 8888888888887776677777777777777777777777777777776543322221 123333
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-
Q 004744 545 DMISRKISPNYISYGILINGYCSM-GHVTEAFR-LWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGV- 621 (732)
Q Consensus 545 ~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 621 (732)
.+....+.|+...-..+-....++ -++.++.+ .-..|.+. .-.....+.++-.+.+.|..++|.+++..+.+.+-
T Consensus 477 ~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 477 LLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred HHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 333333333322111111111111 01222221 12233333 33445566777778888888888888888765431
Q ss_pred CCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004744 622 DPDSISYN---TLINGFVREENMDKAFALVSKMENQG 655 (732)
Q Consensus 622 ~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~g 655 (732)
-|-....| -+++.-........|...++-|...+
T Consensus 555 ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 555 IPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 22222333 44555556667777777777776543
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=5.9e-13 Score=128.81 Aligned_cols=434 Identities=12% Similarity=0.053 Sum_probs=258.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNV-YTLNIMVN 248 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 248 (732)
...|-.-..-=..++++..|..+|+++++.... +...|-..+..=.++..+..|..++++++..- |-+ ..|-..+.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~y 149 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHH
Confidence 344555555556678899999999999987644 88899999999999999999999999998753 333 34545555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004744 249 ALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDR 328 (732)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 328 (732)
+=-..|++..|+++|++..+. .|+..+|++.|..-.+.+.++.|..++++..-. .|++.+|.-....-.+.|....
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 555679999999999999887 799999999999999999999999999998864 6899999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCH----HhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhCCCHHHHHHH
Q 004744 329 AKEVLDEMLQMGLSPDT----ATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPD--IVSFSTLIGIFSRNGQLDRALMY 402 (732)
Q Consensus 329 A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~l 402 (732)
|..+|....+. ..|. ..+.+...--.++..++.|.-+|.-.++.= +.+ ...|..+...--+-|+.....+.
T Consensus 226 aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 226 ARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 99999988764 1222 233444444445667777777777766642 212 23344444433344443322221
Q ss_pred --------HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHH--------HHHHhcCC
Q 004744 403 --------FREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDV-VTYNTIL--------NGLCRAKM 465 (732)
Q Consensus 403 --------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li--------~~~~~~~~ 465 (732)
|+.+.+.+ +-|-.+|-..++.-...|+.+...+++++.+..-++... ..|...| -.-....+
T Consensus 303 Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred HhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22222221 223445555555555556666666666665554222111 1111111 11113445
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004744 466 LTEADDLFNEMLERGVFPDFYTFTTLIHGH----CKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANK 541 (732)
Q Consensus 466 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 541 (732)
.+.+.++|+..++. ++....||.-+--.| .++.++..|.+++...+ |.-|-..++...|+.-.+.+++|...+
T Consensus 382 ~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 382 VERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 55555555555542 222333333222222 23445555555555443 234444555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 542 LWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKG-IKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 618 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (732)
++++.++-++. +..+|......-...|+.+.|..+|+-.+... .......|.+.|+.-...|.+++|..+|+++++
T Consensus 459 LYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 459 LYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 55555554322 44455554444445555555555555554431 111223444444444455555555555555554
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=2.6e-15 Score=143.85 Aligned_cols=481 Identities=14% Similarity=0.101 Sum_probs=321.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHHHHH
Q 004744 171 LIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINAC-NSLLGGLVKIGWVDLAREVYAEVVRSGIELN----VYTLNI 245 (732)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ 245 (732)
.+...|..-|..+.+..+|+..|+-+.+....|+.... ..+...+.+...+..|+++|+-++..-...+ ....+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34445677788889999999999999888777776544 4466778889999999999998775421111 223444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhH--------HHHH
Q 004744 246 MVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTY--------NSLI 317 (732)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------~~li 317 (732)
+.-.+.+.|.+++|+..|+...+. .|+..+-..|+-.+.-.|+-++..+.|.+|+.-...||..-| ..|+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 455678899999999999998877 578777666666667789999999999999865333332211 1222
Q ss_pred HHHHh---------cC--ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHH
Q 004744 318 NGLCK---------KG--RCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTL 386 (732)
Q Consensus 318 ~~~~~---------~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 386 (732)
.--.+ .. +.++++-.-.+++.--+.|+-.. | .+-+++.+..-.-..+. ...--.-
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~-----------g-~dwcle~lk~s~~~~la--~dlei~k 425 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA-----------G-CDWCLESLKASQHAELA--IDLEINK 425 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc-----------c-cHHHHHHHHHhhhhhhh--hhhhhhH
Confidence 21111 11 11112111111211111222110 0 12222222221111000 0011122
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 004744 387 IGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCR--NGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAK 464 (732)
Q Consensus 387 ~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 464 (732)
...+.++|+++.|.++++-+.+..-+.-...-+.|-..+.- -.++.+|.+.-+..+...- -+......-.......|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecC
Confidence 34578899999999999888776333222233333322222 2356677666665554321 13333333334445689
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 465 MLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWA 544 (732)
Q Consensus 465 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 544 (732)
++++|.+.|++.+..+-.- ......+.-.+-..|++++|++.|-++-.. +..+..+...+...|-...+...|++++.
T Consensus 505 d~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999999998763321 122223334567889999999998765432 12366677778888999999999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004744 545 DMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD 624 (732)
Q Consensus 545 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 624 (732)
+.... ++.|+...+-|...|-+.|+-..|++.+-+-..- ++.+..+...+...|....-+++|+.+|++..- +.|+
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 88765 5668999999999999999999999988777655 688889999999889988889999999998865 6899
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004744 625 SISYNTLINGF-VREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGR 675 (732)
Q Consensus 625 ~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 675 (732)
..-|..++..| .+.|++++|+.+++....+ ++.|.....-|++.+...|.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999887554 5789999999999998875 66688888888888877764
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.4e-13 Score=131.35 Aligned_cols=448 Identities=16% Similarity=0.199 Sum_probs=309.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChhHH-HHHHHHHHhCCCCCCHHHHHHH
Q 004744 205 INACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALC--KDHKIDSA-KMFLCEMEQKGVYPDTVTYNTL 281 (732)
Q Consensus 205 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A-~~~~~~~~~~g~~p~~~~~~~l 281 (732)
+.+-|.|+. +..+|.+.++.-+|+.|...|++.+...-..|.+..| ...++--| .+.|-.|.+.|-. +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 345566665 4567899999999999999999888888777765544 33333322 3455566666533 44455
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCH
Q 004744 282 INAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENM 361 (732)
Q Consensus 282 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 361 (732)
|.|++.+ ++-+..- -+..+|..+|.++|+-...+.|.+++++......+.+..++|.+|.+-.-
T Consensus 191 -----K~G~vAd---L~~E~~P----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~---- 254 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLP----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY---- 254 (625)
T ss_pred -----ccccHHH---HHHhhcC----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----
Confidence 4455544 3333332 27889999999999999999999999999887778899999999876442
Q ss_pred hHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHH
Q 004744 362 SEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDR----ALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLE-ALK 436 (732)
Q Consensus 362 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~----A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~ 436 (732)
....+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 2337899999999999999999999999999998775 45788899999999999999999999999888744 444
Q ss_pred HHHHHHH----CCCC----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHhcCCH
Q 004744 437 MRDEMLE----KGCV----MDVVTYNTILNGLCRAKMLTEADDLFNEMLERG----VFPDF---YTFTTLIHGHCKDGNM 501 (732)
Q Consensus 437 ~~~~~~~----~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~~~---~~~~~li~~~~~~g~~ 501 (732)
+..++.. +.+. .|...+...+..|.+..+.+-|.++..-+.... +.|+. .-|..+....|+....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 2222 245566677778888888888888776554321 22222 3456677788888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 502 NKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEM 581 (732)
Q Consensus 502 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (732)
+.-...|+.|+-.-.-|+..+...++.+..-.|.++-.-++|.++...|..-+..... +++..|
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e----------------eil~~L 478 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE----------------EILMLL 478 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH----------------HHHHHH
Confidence 9999999999888777888888888898888999999999998888765432222222 222333
Q ss_pred HhCCCCCCHHHHHHHHHHHHHc-CCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C
Q 004744 582 VGKGIKPTLVSCNTIIKGYCRS-GDASKA-DEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLV-P 658 (732)
Q Consensus 582 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-p 658 (732)
......|+...-..+-....+. -++.++ ...-.+|.+. .-.....+.++-.+.+.|+.++|.+++.-..+.+-+ |
T Consensus 479 ~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 479 ARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred hcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 3322233222111111111111 112222 2222334443 344556777888899999999999999998664422 3
Q ss_pred CHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004744 659 DVITYN---VILTGFCRQGRMHDSELILWRMIEKGL 691 (732)
Q Consensus 659 ~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~g~ 691 (732)
-....+ -+.+.-.+..+...|...++-|...+.
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 233344 455666677889999999999977543
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=6.1e-12 Score=121.92 Aligned_cols=461 Identities=12% Similarity=0.106 Sum_probs=351.3
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004744 191 EVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKG 270 (732)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 270 (732)
.-|+.-+.++ ..+...|.....-=..++++..|..+|++++..+ ..+...|...+.+=.++..+..|+.++++....
T Consensus 60 kefEd~irrn-R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~- 136 (677)
T KOG1915|consen 60 KEFEDQIRRN-RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI- 136 (677)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-
Confidence 3455444433 3467778888887788899999999999998865 667778888899999999999999999999886
Q ss_pred CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 004744 271 VYPDT-VTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYN 349 (732)
Q Consensus 271 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 349 (732)
-|-+ ..|.-.+.+--..|++..|.++|++-.+ ..|+..+|.+.|+.-.+.+..+.|..++++.+-. .|++.+|.
T Consensus 137 -lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wi 211 (677)
T KOG1915|consen 137 -LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWI 211 (677)
T ss_pred -cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHH
Confidence 3433 3566667777778999999999999887 4899999999999999999999999999998864 69999999
Q ss_pred HHHHHHHcCCCHhHHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 004744 350 TLLVESCRKENMSEAEEIFCEMSRR-GV-APDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD--NVLYTIIINGY 425 (732)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~~~~-g~-~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~ 425 (732)
-...--.+.|....|..+|....+. |- .-+...+.+....-..+..++.|.-+|+-.++. ++.+ ...|..+...=
T Consensus 212 kyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 212 KYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFE 290 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHH
Confidence 9888889999999999999988653 11 113345666666666788899999999988876 2223 23454444444
Q ss_pred HHcCCH---HHHHH-----HHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHH--
Q 004744 426 CRNGFV---LEALK-----MRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDF--YTFTTLIH-- 493 (732)
Q Consensus 426 ~~~g~~---~~A~~-----~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~li~-- 493 (732)
-+-|+. ++++- -++.+++.++. |-.+|-..+..-...|+.+...++|+.++.. ++|-. ..|...|-
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLW 368 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHH
Confidence 445554 44432 24455555443 7788888888888889999999999999876 34422 12222221
Q ss_pred ------HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004744 494 ------GHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGF----CKVGEMEKANKLWADMISRKISPNYISYGILIN 563 (732)
Q Consensus 494 ------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 563 (732)
.-....+.+.+.++|+..++. ++....|+.-+--+| .++.++..|.+++...+ |..|...++...|.
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHH
Confidence 113467899999999998874 555666766655444 46788999999998877 55778889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHH
Q 004744 564 GYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEG-VDPDSISYNTLINGFVREENMD 642 (732)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~ 642 (732)
.-.+.+.++....+|+..++-+ |.|..+|......-...|+.+.|..+|+-++... .......|-+.|+.-...|.++
T Consensus 446 lElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 9999999999999999999875 7788899888888888999999999999988752 2223566777888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004744 643 KAFALVSKMENQGLVPDVITYNVILT 668 (732)
Q Consensus 643 ~A~~~~~~~~~~g~~p~~~~~~~l~~ 668 (732)
.|..+++++.+. .+...+|-+.+.
T Consensus 525 kaR~LYerlL~r--t~h~kvWisFA~ 548 (677)
T KOG1915|consen 525 KARALYERLLDR--TQHVKVWISFAK 548 (677)
T ss_pred HHHHHHHHHHHh--cccchHHHhHHH
Confidence 999999999984 445556765543
No 37
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.72 E-value=3.3e-11 Score=121.25 Aligned_cols=545 Identities=14% Similarity=0.115 Sum_probs=317.5
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004744 118 SMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLR 197 (732)
Q Consensus 118 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 197 (732)
+..|-.-+..+..+|+...-+..|+++++.-++. ....+|...++..-..|.++-++.++++.+
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvt----------------qH~rIW~lyl~Fv~~~~lPets~rvyrRYL 165 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVT----------------QHDRIWDLYLKFVESHGLPETSIRVYRRYL 165 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchH----------------hhccchHHHHHHHHhCCChHHHHHHHHHHH
Confidence 5677777778888999998899999988653321 235678899999999999999999999999
Q ss_pred HCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHh
Q 004744 198 NKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSG------IELNVYTLNIMVNALCKDHKID---SAKMFLCEMEQ 268 (732)
Q Consensus 198 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~ 268 (732)
+. ++..-+-.+.-+++.++.++|.+.+..++... .+.+...|..+-+...+.-+.- ....+++.+..
T Consensus 166 k~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~ 241 (835)
T KOG2047|consen 166 KV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR 241 (835)
T ss_pred hc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc
Confidence 86 55567888899999999999999999886431 2455566776666655543332 23344555444
Q ss_pred CCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH-HCCCC-CC
Q 004744 269 KGVYPDT--VTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEML-QMGLS-PD 344 (732)
Q Consensus 269 ~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~g~~-~~ 344 (732)
. .+|. ..|++|.+-|.+.|.+++|.++|++.... ...+..|..+.+.|++...-.-+..+ ++. +.+.. -+
T Consensus 242 r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m--e~a~~~~~n~ed 315 (835)
T KOG2047|consen 242 R--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM--ELADEESGNEED 315 (835)
T ss_pred c--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH--hhhhhcccChhh
Confidence 3 3454 57999999999999999999999998775 22555666777776643221111111 010 01101 11
Q ss_pred HHhHHHHHHHHHcCCCHhHHHHHHHHHHhCC-----------CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 004744 345 TATYNTLLVESCRKENMSEAEEIFCEMSRRG-----------VAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVP 413 (732)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-----------~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~ 413 (732)
... ++-...-|+.+...+ -+.++..|..-+.. ..|+..+-...|.++.+. +.|
T Consensus 316 ~~d-------------l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP 379 (835)
T KOG2047|consen 316 DVD-------------LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDP 379 (835)
T ss_pred hhh-------------HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCc
Confidence 111 111112222221110 11134444433332 245556666666665543 222
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--
Q 004744 414 D------NVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMD---VVTYNTILNGLCRAKMLTEADDLFNEMLERGVF-- 482 (732)
Q Consensus 414 ~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-- 482 (732)
. ...|..+.+.|-..|+++.|..+|++..+-.+.-- ..+|.....+-.+..+++.|.++.+.....--.
T Consensus 380 ~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~ 459 (835)
T KOG2047|consen 380 KKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE 459 (835)
T ss_pred ccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh
Confidence 1 13456666666677777777777776665433211 234444455555566666666666554432110
Q ss_pred --------C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 483 --------P-------DFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMI 547 (732)
Q Consensus 483 --------~-------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 547 (732)
| +...|...++.--..|-++....+|+.++...+. ++.........+-...-++++.++|++-+
T Consensus 460 ~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI 538 (835)
T KOG2047|consen 460 LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGI 538 (835)
T ss_pred hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence 0 2234555566556667777777888877776443 22222222223344556777777777766
Q ss_pred HCCCCCCHH-HHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004744 548 SRKISPNYI-SYGILINGYCS---MGHVTEAFRLWYEMVGKGIKPTLVS--CNTIIKGYCRSGDASKADEFLSKMVSEGV 621 (732)
Q Consensus 548 ~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 621 (732)
..-..|++. .|+..+.-+.+ ..+++.|..+|++.++ |.+|...- |-.....-.+-|....|+.+++++.. ++
T Consensus 539 ~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v 616 (835)
T KOG2047|consen 539 SLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AV 616 (835)
T ss_pred ccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cC
Confidence 654444443 45554444432 2357788888888887 45554322 22222223345777788888887655 33
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--C
Q 004744 622 DPD--SISYNTLINGFVREENMDKAFALVSKMENQGLVPDVIT---YNVILTGFCRQGRMHDSELILWRMIEKGLNP--D 694 (732)
Q Consensus 622 ~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~ 694 (732)
++. ...||..|.--...--+..-..+|+++++ .-||... .-.....=++.|.++.|..++....+. .+| +
T Consensus 617 ~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~ 693 (835)
T KOG2047|consen 617 KEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVT 693 (835)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCC
Confidence 333 34566666444333334455667777776 3454432 222333445678888888887776663 334 4
Q ss_pred HHHHHHHHHHHHhcCC
Q 004744 695 RSTYTTLINGHVSQNN 710 (732)
Q Consensus 695 ~~~~~~l~~~~~~~g~ 710 (732)
...|.+.=.-=.+.|+
T Consensus 694 ~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 694 TEFWDTWKEFEVRHGN 709 (835)
T ss_pred hHHHHHHHHHHHhcCC
Confidence 5667666666677777
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.3e-11 Score=119.71 Aligned_cols=366 Identities=15% Similarity=0.063 Sum_probs=237.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH-
Q 004744 270 GVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATY- 348 (732)
Q Consensus 270 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~- 348 (732)
+..-|...+-.....+-+.|....|.+.|...... .+-+-.+|..|.... -+.+.+..+ . .|.+.|...+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l----~-~~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSIL----V-VGLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHH----H-hcCcccchHHH
Confidence 33446666666666777888999999999888765 122334444433322 222222221 1 1222221111
Q ss_pred -HHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHH
Q 004744 349 -NTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGL--VPDNVLYTIIINGY 425 (732)
Q Consensus 349 -~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~--~~~~~~~~~li~~~ 425 (732)
--+..++-...+.+++.+-.......|++-+...-+....+.....++++|+.+|+++.+..+ --|..+|+.++ |
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Y 307 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--Y 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--H
Confidence 123445555667888888888888888776666666666777788889999999998887631 11445676665 3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004744 426 CRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKAL 505 (732)
Q Consensus 426 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 505 (732)
.+..+-.- ..+..-...-..--+.|...+.+.|.-.++.++|...|+..++.++. ....|+.+.+-|....+...|+
T Consensus 308 v~~~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 308 VKNDKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HHhhhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 33332211 11111111101123456667777788888888888888888887655 5667888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004744 506 NLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKG 585 (732)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 585 (732)
+-++.+++-.. .|-..|-.|.++|.-.+.+.-|+-.|++..... +.|...|.+|..+|.+.++.++|++.|......|
T Consensus 385 ~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 88888887643 377788888888888888888888888888764 4478888888888888888888888888888776
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 586 IKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSE----GVDPD--SISYNTLINGFVREENMDKAFALVSKME 652 (732)
Q Consensus 586 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 652 (732)
..+...+..+.+.|.+.++.++|...|++-++. |...+ .....-|...+.+.+++++|..+.....
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 445677888888888888888888888776652 32222 1122224455566666666655444433
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=4.5e-13 Score=130.32 Aligned_cols=220 Identities=13% Similarity=0.065 Sum_probs=120.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004744 462 RAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANK 541 (732)
Q Consensus 462 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 541 (732)
-.|+.-.|.+-|+..++....++. .|..+...|....+.++-...|++....+.. ++.+|..-.+++.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 355666666666666665444222 2555555566666666666666666655433 44555555555555666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004744 542 LWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGV 621 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 621 (732)
-|++.++..+. +...|..+.-+..+.++++++...|++.+++ +|.-+..|+-....+...+++++|.+.|+..++...
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 66666655322 4444555555555566666666666666655 444556666666666666666666666666655321
Q ss_pred C-----CCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 622 D-----PDSISY--NTLINGFVREENMDKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 622 ~-----~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
. .+...+ -.++-.- -.+++..|.++++++.+ +.|. ...|..|...-.++|++++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 011111 1111111 12566666666666665 3442 34555666666666666666666666554
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.1e-11 Score=120.23 Aligned_cols=362 Identities=11% Similarity=0.035 Sum_probs=192.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCH--hHHHHH
Q 004744 309 GVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDI--VSFSTL 386 (732)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~l 386 (732)
|..-+-.....+.+.|..+.|+..|...+..- +-.-.+|..|.... .+.+.+ ...... .+.|. ..---+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~----~~l~~~-l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEIL----SILVVG-LPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHH----HHHHhc-CcccchHHHHHHH
Confidence 44443344444556667777777776665431 33334444333322 122222 111111 11111 111123
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcC
Q 004744 387 IGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCV--MDVVTYNTILNGLCRAK 464 (732)
Q Consensus 387 ~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~ 464 (732)
..++....+.+++.+-.+.....|++-+...-+....+.-...++++|+.+|+++.+..+- -|..+|..++- .++.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 3444445566666666666666666655555555555556666777777777777665322 24455555542 2222
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 465 MLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWA 544 (732)
Q Consensus 465 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 544 (732)
+..-+ .+.+-.-.--+--+.|...+.+-|.-.++.+.|...|+..++.+.. ....|+.+..-|....+...|.+-++
T Consensus 312 ~skLs--~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKLS--YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHHH--HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 21111 1111110000112345555666666666777777777776665433 44556666666777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004744 545 DMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD 624 (732)
Q Consensus 545 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 624 (732)
..++.. +.|...|-.|..+|.-.+.+.-|+-.|++..... |.|...|.+|..+|.+.++.++|++.|......| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 776653 3366666677777777777777777777666652 5566677777777777777777777777666643 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 625 SISYNTLINGFVREENMDKAFALVSKMEN----QGLVPD-V-ITYNVILTGFCRQGRMHDSELILWRMI 687 (732)
Q Consensus 625 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 687 (732)
...+..|...|-+.++.++|...+++-++ .|...+ . ....-|..-+.+.+++++|..+.....
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 46666677777777777777666666554 221111 1 111123333445566666655544443
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=5.2e-13 Score=138.57 Aligned_cols=285 Identities=11% Similarity=0.077 Sum_probs=200.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004744 428 NGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNL 507 (732)
Q Consensus 428 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (732)
.|++++|.+.+....+.... ....+........+.|+++.|.+.+.++.+....+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 57777777666655443211 12223333344467788888888888777653322222222335667778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 004744 508 FDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYI-------SYGILINGYCSMGHVTEAFRLWYE 580 (732)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~ 580 (732)
++.+.+.... +......+...|.+.|++++|.+++..+.+.+..++.. .|..++.......+.+...++|+.
T Consensus 176 l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 8887776533 56677777788888888888888888887765442221 223333333344556666777776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C
Q 004744 581 MVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-D 659 (732)
Q Consensus 581 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~ 659 (732)
..+. .+.++.....+...+...|+.++|.+.+++..+. .||.... ++.+....++.+++++..++..+. .| |
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~ 327 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDT 327 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCC
Confidence 6544 3567888888999999999999999999998874 4454322 233444669999999999998884 45 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 660 VITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 660 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
+..+..++..|.+.|++++|...|+++.+ ..|+...+..+..++.+.|+.++|.+++++.+.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55678889999999999999999999998 889999989999999999999999999998864
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.5e-12 Score=124.25 Aligned_cols=220 Identities=11% Similarity=0.082 Sum_probs=123.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004744 428 NGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNL 507 (732)
Q Consensus 428 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (732)
.|+...|..-|+..+.....++ ..|-.+...|....+.++-...|++..+.++. |+.+|..-...+.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 4566666666666666544322 22555555666666666666666666665544 445555555555556666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004744 508 FDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIK 587 (732)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 587 (732)
|++.+..... +...|-.+.-+..+.+++++++..|++..++ ++..+..|+.....+..+++++.|.+.|+..++....
T Consensus 417 F~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 6666654322 4444444444555666666666666666654 4445666666666666666666666666666654211
Q ss_pred -----CCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 588 -----PTLVSC--NTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 588 -----~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
.+...+ ..++ .+.-.+++..|.+++++.++...+ ....|.+|...-.+.|+.++|+++|++...
T Consensus 495 ~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 011111 1111 111235666666666666653211 234566666666666666666666666554
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=8.3e-12 Score=124.12 Aligned_cols=474 Identities=12% Similarity=0.043 Sum_probs=217.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004744 204 SINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLIN 283 (732)
Q Consensus 204 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~ 283 (732)
+..-+..+++-+..+.++.-|.-+-+++...+ .|+..---++.+++-.|+++.|..++..-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 44555666666666677777777777766554 33333334567777777777777666553222 226666666777
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhH
Q 004744 284 AYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSE 363 (732)
Q Consensus 284 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 363 (732)
.+.+..++++|..++..... .-++..|-.--. ...-..+.+. ++.. +......+-.-...|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHH
Confidence 77778888888877763311 111111100000 0000000111 0000 00001111111223344455566
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhC------------------CCHHHHHHHHHHH----------------HHC
Q 004744 364 AEEIFCEMSRRGVAPDIVSFSTLIGIFSRN------------------GQLDRALMYFREM----------------KSA 409 (732)
Q Consensus 364 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~------------------g~~~~A~~l~~~~----------------~~~ 409 (732)
|...|.+.....+. +...+..++....-. .+.+.-..+|+-. .-.
T Consensus 160 ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~ 238 (611)
T KOG1173|consen 160 ARDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLI 238 (611)
T ss_pred HHHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhh
Confidence 66666555543211 111111111111100 0001111111100 000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004744 410 GLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFT 489 (732)
Q Consensus 410 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 489 (732)
+..-+........+-+...+++.+..++.+.+.+..+. ....+..-|.++...|+..+-..+=.++.+.-+. .+.+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf-h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF-HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC-CcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchh
Confidence 11222333333344444555555565555555554322 3333333444555555555555555555554322 445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004744 490 TLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMG 569 (732)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 569 (732)
++.--|...|+..+|.+.|.+....+.. =...|-.+...|.-.|+.|+|+..+....+.- +-...-+--+.--|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhc
Confidence 5555555556666666665555443211 12345555555555555566555555544431 101111112223345555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHH
Q 004744 570 HVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSE--GVDP----DSISYNTLINGFVREENMDK 643 (732)
Q Consensus 570 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~ 643 (732)
+.+-|.+.|.+..... |.|+..++-+.-.....+.+.+|..+|+..+.. .+.+ -..+++.|++.|.+.+++++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 5555666555555442 445555555555555555555666555555421 0001 12234555555555566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004744 644 AFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTL 701 (732)
Q Consensus 644 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 701 (732)
|+..+++.+.. .+.+..++.+++-.|...|+++.|...|.+.+- +.||..+-..+
T Consensus 474 AI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~l 528 (611)
T KOG1173|consen 474 AIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISEL 528 (611)
T ss_pred HHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHH
Confidence 66666555552 122445555555555555666666666655555 55554333333
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=8.9e-13 Score=137.64 Aligned_cols=290 Identities=10% Similarity=0.041 Sum_probs=188.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004744 427 RNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALN 506 (732)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (732)
..|+++.|.+.+.+..+.... +...+-.......+.|+++.|.+.+.+..+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 457777777777666554322 2333334455666677777777777776654332222233334666667777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-H---HHHHHHhcCCHHHHHHHHHHHH
Q 004744 507 LFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYG-I---LINGYCSMGHVTEAFRLWYEMV 582 (732)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~---li~~~~~~g~~~~A~~~~~~~~ 582 (732)
.++.+.+..+. +......+...+...|++++|.+.+..+.+.+.. +...+. . ....+...+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777766432 5566667777777777777777777777776543 222221 1 1111122233333334444444
Q ss_pred hCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004744 583 GKG---IKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSIS---YNTLINGFVREENMDKAFALVSKMENQGL 656 (732)
Q Consensus 583 ~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 656 (732)
+.. .+.+...+..++..+...|+.++|.+.+++..+.. ||... ...........++.+.+.+.+++..+.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-- 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-- 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--
Confidence 431 12477888888888999999999999999888753 33321 112222234457788899999888873
Q ss_pred CCC-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 657 VPD-V--ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 657 ~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
.|+ + ....++++.|.+.|++++|.++|++.......|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 454 4 556788999999999999999999533322788988888999999999999999999998754
No 45
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.64 E-value=3.2e-09 Score=107.31 Aligned_cols=526 Identities=11% Similarity=0.068 Sum_probs=343.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKG-ICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVN 248 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (732)
+.+|-.-+....++|++-.-..+|+.++..- +.-....|...+.-.-..|-.+-+..+|++.++. ++..-+-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 6788888999999999999999999987652 2234567888999888999999999999999874 3334666788
Q ss_pred HHHhcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 004744 249 ALCKDHKIDSAKMFLCEMEQKG------VYPDTVTYNTLINAYCREGFL---EEAFQLMNSMSGKGLKPGVFTYNSLING 319 (732)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~ 319 (732)
.+++.++.++|.+.+....... .+.+-..|..+-+...+.-+. -...++++.+..+-...=...|++|.+.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 8999999999999998876541 122444566655555543322 2333445555443111124568999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCC-CCCHhHHHHHHHHHHhCCCHHH
Q 004744 320 LCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGV-APDIVSFSTLIGIFSRNGQLDR 398 (732)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~ 398 (732)
|.+.|.+++|..++++.++. ...+.-++.+.+.|..-....-+..+= ...+.+. .-+... ++-
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~d-------------l~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVD-------------LEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhh-------------HHH
Confidence 99999999999999998764 345555666666665533222222111 0111111 111111 222
Q ss_pred HHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-C----CcCHHHHHHHHHHHHh
Q 004744 399 ALMYFREMKSAG-----------LVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKG-C----VMDVVTYNTILNGLCR 462 (732)
Q Consensus 399 A~~l~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~----~~~~~~~~~li~~~~~ 462 (732)
...-|+.+.... -+-++..|..-+. +..|+..+-...+.+..+.- + -.-...|..+...|-.
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh
Confidence 233333333221 1223344444333 34567777777888777641 1 1124568888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------C------CCHHH
Q 004744 463 AKMLTEADDLFNEMLERGVFPD---FYTFTTLIHGHCKDGNMNKALNLFDIMTQKSI-----------K------PDIVT 522 (732)
Q Consensus 463 ~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~------~~~~~ 522 (732)
.|+++.|..+|++..+-..+-- ..+|..-...=.+..+++.|+.+.+....--- + .+...
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 9999999999999887643311 34566666666778899999999887754211 1 12345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 004744 523 YNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTL-VSCNTIIKGYC 601 (732)
Q Consensus 523 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 601 (732)
|+..++.--..|-++....+|+++++..+. ++...-.....+-.+.-++++.++|++-+..--.|+. ..|+..+.-+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 566677777788999999999999987654 3333333334455667789999999887765334443 46777666554
Q ss_pred H---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcC
Q 004744 602 R---SGDASKADEFLSKMVSEGVDPDSISYNTL--INGFVREENMDKAFALVSKMENQGLVPDV--ITYNVILTGFCRQG 674 (732)
Q Consensus 602 ~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g 674 (732)
+ ....+.|+.+|++.++ |.+|...-+-.| ...--+.|....|+.+++++... +++.. ..|+..|.--...=
T Consensus 559 ~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHh
Confidence 3 2358999999999998 666654333222 23334678899999999998764 45533 47777775443332
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 675 RMHDSELILWRMIEKGLNPDRS---TYTTLINGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 675 ~~~~A~~~~~~~~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 722 (732)
-+..-..+|+++++ .-||.. ......+.=++.|..+.|..++.---
T Consensus 637 Gv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 637 GVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred CCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 34556789999998 677643 34445566678899999998887654
No 46
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=2.4e-11 Score=113.52 Aligned_cols=491 Identities=12% Similarity=0.084 Sum_probs=316.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 004744 180 YVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSA 259 (732)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (732)
+....++..|+.+++.-...+-+-...+---+...+...|++++|..+|..+.... .++...+..|.-++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 44566778888877766544322111223334566778899999999999887754 56666666677666677999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004744 260 KMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQM 339 (732)
Q Consensus 260 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 339 (732)
..+-+...+ +...-..|.+.-.+.|+-++-..+.+.+.. ....-.+|.......-.+.+|++++.+++..
T Consensus 111 ~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 887766543 333344556666778887777776666554 3344556666666666789999999999875
Q ss_pred CCCCCHHhHHH-HHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004744 340 GLSPDTATYNT-LLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLY 418 (732)
Q Consensus 340 g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~ 418 (732)
.|+-...|. +.-+|.+..-++-+.++++--.+. ++.+....|..+....+.=+-..|.+-.+++.+.+... |
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~ 253 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y 253 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c
Confidence 355555554 345677888888888888877665 33345566666655555433344444445554432211 1
Q ss_pred HHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 419 TIIINGYCRN-----GFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIH 493 (732)
Q Consensus 419 ~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 493 (732)
..+.-+++. ..-+.|++++-.+.+. -+..--.|+-.|.+.+++.+|..+.+++.- ..|.......++.
T Consensus 254 -~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~ 326 (557)
T KOG3785|consen 254 -PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF 326 (557)
T ss_pred -hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH
Confidence 122333443 3457888888777764 223333455568899999999998877632 2333333333333
Q ss_pred HH-----HhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004744 494 GH-----CKDGNMNKALNLFDIMTQKSIKPDI-VTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCS 567 (732)
Q Consensus 494 ~~-----~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 567 (732)
+- .....+.-|.+.|+..-+.+..-|. .--.++...+.-..++++.+..++.+..--...|...+| +..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHH
Confidence 21 1223466677777766555444332 223445556666678899999888887765555555555 6788999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHH
Q 004744 568 MGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNT-LINGFVREENMDKAFA 646 (732)
Q Consensus 568 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~ 646 (732)
.|++.+|.++|-.+....++.+..-...+.++|.+.+..+.|++++-++- .+.+..+.-. +..-|.+++.+--|-+
T Consensus 406 tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAK 482 (557)
T ss_pred hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888765545444445566788999999999988875543 3334444443 4577889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 004744 647 LVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNN 710 (732)
Q Consensus 647 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 710 (732)
.|+.+.. +.|++.-|. |+-.....+|+.+....-.|- ......++..+...++
T Consensus 483 AFd~lE~--lDP~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 483 AFDELEI--LDPTPENWE---------GKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred hhhHHHc--cCCCccccC---------CccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCC
Confidence 9999887 688888774 333444566777666444443 3556666666666554
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.3e-11 Score=119.95 Aligned_cols=484 Identities=12% Similarity=0.033 Sum_probs=327.7
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004744 167 GSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIM 246 (732)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 246 (732)
..+..-+..+++-+..+.++.-|.-+-++....+. |+..---+..++.-.|.++.|..+...-.-. ..|..+....
T Consensus 13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~ 88 (611)
T KOG1173|consen 13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLA 88 (611)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHH
Confidence 34566677888888888999999999998877764 4555556788888889999988887765322 4677777888
Q ss_pred HHHHHhcCChhHHHHHHHHH----HhCC---------CCCCHHH----HHHHH-------HHHHHcCCHHHHHHHHHHHh
Q 004744 247 VNALCKDHKIDSAKMFLCEM----EQKG---------VYPDTVT----YNTLI-------NAYCREGFLEEAFQLMNSMS 302 (732)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~~----~~~g---------~~p~~~~----~~~li-------~~~~~~g~~~~A~~~~~~m~ 302 (732)
..++.+..++++|..++... .... +.+|..- -+.-. ..|....+.++|...|.+..
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL 168 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH
Confidence 89999999999999998832 1110 0111100 00111 12223334555555555555
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCC
Q 004744 303 GKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGL----SPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAP 378 (732)
Q Consensus 303 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 378 (732)
.. |...|..+...-. ...-.+.+.++.+..... .-+......+.....-...-+++...-.+..-.+..-
T Consensus 169 ~~----D~~c~Ea~~~lvs--~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~ 242 (611)
T KOG1173|consen 169 LA----DAKCFEAFEKLVS--AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAE 242 (611)
T ss_pred hc----chhhHHHHHHHHH--HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhh
Confidence 44 3333222221110 011122222222221110 0111111111111100000011111111111122334
Q ss_pred CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 004744 379 DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILN 458 (732)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 458 (732)
+.........-+...+++.+..++++.+.+.. ++....+..-|..+...|+..+-..+-.++++.-+. .+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 55666677778889999999999999998763 456666777777899999988888888888886544 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCH
Q 004744 459 GLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQK--SIKPDIVTYNTLIDGFCKVGEM 536 (732)
Q Consensus 459 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~ 536 (732)
.|.-.|+.++|.+.|.+....+.. =...|....+.|+-.|..|+|+..+..+.+. |.. -+..| +.--|.+.++.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccH
Confidence 899999999999999998766433 3458999999999999999999999887764 211 12233 34457889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC---CC-CHHHHHHHHHHHHHcCCHHHHH
Q 004744 537 EKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGK--GI---KP-TLVSCNTIIKGYCRSGDASKAD 610 (732)
Q Consensus 537 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~---~~-~~~~~~~l~~~~~~~g~~~~A~ 610 (732)
+-|.++|.+.... .+.|+...+.+.-.....+.+.+|...|+..+.. .+ .+ ...+++.+..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999999886 3558888998888888889999999999988732 11 11 2456889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004744 611 EFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGF 670 (732)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 670 (732)
..+++.+... +.+..++.+++-.|...|+++.|.+.|.+... +.|+..+...++..+
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999864 45788999999999999999999999999998 789887776666533
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=2.9e-12 Score=132.99 Aligned_cols=291 Identities=10% Similarity=0.062 Sum_probs=156.2
Q ss_pred CCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHH
Q 004744 358 KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLY--TIIINGYCRNGFVLEAL 435 (732)
Q Consensus 358 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~ 435 (732)
.|+++.|.+.+....+..-. ....|........+.|+++.|.+.+.++.+. .|+...+ ......+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 56666666555554433111 1122222233335566666666666666543 2332211 12244555555666666
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004744 436 KMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKS 515 (732)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (732)
..++++.+..+. ++.....+...|.+.|++++|.+++..+.+.+..++ .....+-
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~----------------------- 228 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHH-----------------------
Confidence 555555555433 445555555555555555555555555555433211 1111000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004744 516 IKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNT 595 (732)
Q Consensus 516 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 595 (732)
...|..++.......+.+...++|+.+.+. .+.++.....+...+...|+.++|.+.+++..+. ++|....
T Consensus 229 ----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~-- 299 (398)
T PRK10747 229 ----QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV-- 299 (398)
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--
Confidence 001112222222233344445555544332 2335666666777777777777777777777664 4444222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004744 596 IIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGR 675 (732)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 675 (732)
++.+....++.+++.+..++..+.. +-|...+.++...+.+.|++++|.+.|+.+.+ ..|+...+..+..++.+.|+
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCC
Confidence 2223334577777777777776643 23455566777777777777777777777776 56777777777777777777
Q ss_pred HHHHHHHHHHHHH
Q 004744 676 MHDSELILWRMIE 688 (732)
Q Consensus 676 ~~~A~~~~~~~~~ 688 (732)
.++|..++++...
T Consensus 377 ~~~A~~~~~~~l~ 389 (398)
T PRK10747 377 PEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776654
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=4.3e-15 Score=147.36 Aligned_cols=260 Identities=17% Similarity=0.155 Sum_probs=95.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004744 455 TILNGLCRAKMLTEADDLFNEMLERG-VFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKV 533 (732)
Q Consensus 455 ~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 533 (732)
.+...+.+.|++++|.++++...... ...|...|..+.......++.+.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33555666777777777775443332 2224444555555566677777777777777665433 44455555555 567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004744 534 GEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKG-IKPTLVSCNTIIKGYCRSGDASKADEF 612 (732)
Q Consensus 534 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 612 (732)
+++++|.+++.+..+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777776665442 355556667777777777777777777765432 345666777777777788888888888
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004744 613 LSKMVSEGVDP-DSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGL 691 (732)
Q Consensus 613 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 691 (732)
+++.++.. | |....+.++..+...|+.+++.++++...+.. +.|+..|..++.+|...|+.++|..+|++..+ .
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~ 243 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--L 243 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--H
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc--c
Confidence 88877743 4 46667777777888888888777777776642 34555677778888888888888888888777 5
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 692 NP-DRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 692 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
.| |......+++++...|+.++|.++..++.+
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp STT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 55 567777788888888888888887776653
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.60 E-value=1.2e-11 Score=128.74 Aligned_cols=498 Identities=14% Similarity=0.113 Sum_probs=252.9
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004744 191 EVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKG 270 (732)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 270 (732)
.++-.+...|+.|+.++|.+++.-|+..|+.+.|- +|..|.-...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34555667777888888888888888888887777 7777766666777777888887777777776665
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-Hh-------hCCCCCC--------------HhhHHHHHHHHHhcCChhH
Q 004744 271 VYPDTVTYNTLINAYCREGFLEEAFQLMNS-MS-------GKGLKPG--------------VFTYNSLINGLCKKGRCDR 328 (732)
Q Consensus 271 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~--------------~~~~~~li~~~~~~g~~~~ 328 (732)
.|-..+|..|..+|.+.||+.- ++..++ |. ..|+-.- ...-.+++....-.|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 4567778888888888887654 222222 11 0111000 0001112222223333333
Q ss_pred HHHHHHHHHHCCC-CCCHHhHHHHHHHHHc-CCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004744 329 AKEVLDEMLQMGL-SPDTATYNTLLVESCR-KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREM 406 (732)
Q Consensus 329 A~~~~~~~~~~g~-~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~ 406 (732)
+.+++..+..... .|-.+ +++-... ...+++-..+.....+ .|++.++..++..-...|+++.|..++.+|
T Consensus 158 llkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 3333333221100 00000 1111111 1112222222222221 245556666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004744 407 KSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFY 486 (732)
Q Consensus 407 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 486 (732)
++.|++.+..-|-.|+-+ .++...+..++.-|.+.|+.|+..|+...+..+..+|....+.+ |.. ...
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~sq-~~h 298 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GSQ-LAH 298 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------ccc-hhh
Confidence 666655555544444433 55555555555666666666666665555544444333211111 111 111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH------------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---C
Q 004744 487 TFTTLIHGHCKDGNMNKALNLFD------------IMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRK---I 551 (732)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~------------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~ 551 (732)
.+++-+..-.-.| ..|.+.++ ...-.|+......|...+.. ...|+-++..++-..+..-. .
T Consensus 299 g~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s 375 (1088)
T KOG4318|consen 299 GFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDS 375 (1088)
T ss_pred hhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccC
Confidence 1122111111222 11111111 11112333233334333332 22566666666666554321 1
Q ss_pred CCCHHHHHHHHHHHHhcCCH------H---HHHHH---------HHHHHhCCCCCCH-----------------------
Q 004744 552 SPNYISYGILINGYCSMGHV------T---EAFRL---------WYEMVGKGIKPTL----------------------- 590 (732)
Q Consensus 552 ~~~~~~~~~li~~~~~~g~~------~---~A~~~---------~~~~~~~~~~~~~----------------------- 590 (732)
..++..|..++.-|.+.-+. . .++.. ..+.... ..||.
T Consensus 376 ~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-lrkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 376 GQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-LRKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-hCcchHHHHHhhhhHHHHhcccccchhh
Confidence 12344555555544432110 0 00000 0000000 11211
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHH
Q 004744 591 -----VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQG--LVPDVITY 663 (732)
Q Consensus 591 -----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~~~ 663 (732)
..-+.++..++..-+..+++..-++....- -+ ..|..||+.++...+.+.|..+.++..... +..|..-+
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m 531 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLM 531 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhH
Confidence 112333444554445555554433333211 11 457888999999999999999988876521 23355667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004744 664 NVILTGFCRQGRMHDSELILWRMIEKG-LNPD-RSTYTTLINGHVSQNNLKEAFRFHDEMLQRGFV 727 (732)
Q Consensus 664 ~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 727 (732)
..+.+.+.+.+...++..+++++.+.- ..|+ ..+...+.+..+..|+.+.-.++.+-+...|+.
T Consensus 532 ~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 532 TSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 788888899999999999999988621 2332 456667777788889888888888777666654
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=5.6e-12 Score=131.67 Aligned_cols=294 Identities=11% Similarity=0.055 Sum_probs=134.8
Q ss_pred cCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004744 357 RKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALK 436 (732)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 436 (732)
..|+++.|.+.+.+..+.... ....+-.......+.|+.+.|.+.+.+..+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 345555555555554443211 1222333344455555555555555555443211111222223445555555555555
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH---HHHhcCCHHHHHHHHHHHH
Q 004744 437 MRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTL-IH---GHCKDGNMNKALNLFDIMT 512 (732)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~---~~~~~g~~~~A~~~~~~~~ 512 (732)
.++.+.+..+. ++..+..+...+.+.|++++|.+.+..+.+.++. +...+..+ .. +....+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 55555555433 4445555555555555555555555555555432 11111100 00 0011111111111222222
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004744 513 QKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVS 592 (732)
Q Consensus 513 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 592 (732)
+. ..+. .+.+...+..++..+...|+.++|.+.+++..++. ||...
T Consensus 253 ~~-------------------------------~p~~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~ 298 (409)
T TIGR00540 253 KN-------------------------------QPRH-RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRA 298 (409)
T ss_pred HH-------------------------------CCHH-HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCccc
Confidence 11 1000 01144444455555555555555555555555442 22110
Q ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004744 593 ---CNTIIKGYCRSGDASKADEFLSKMVSEGVDPDS--ISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVIL 667 (732)
Q Consensus 593 ---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 667 (732)
...........++.+.+.+.+++..+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..++
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 0111111223355566666666665532 1123 344566666667777777777777322222456666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004744 668 TGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 668 ~~~~~~g~~~~A~~~~~~~~~ 688 (732)
..+.+.|+.++|.+++++...
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 667777777777777766543
No 52
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.59 E-value=5.9e-10 Score=112.93 Aligned_cols=466 Identities=17% Similarity=0.133 Sum_probs=284.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004744 171 LIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNAL 250 (732)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (732)
..|..++++| ..+.+...+...+.+++.-+. ...+.....-.+...|+.++|.+..+..++.+ ..+.+.|..+.-.+
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 3444445544 556777777777777764333 44555555556677788888888777776644 55666777777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 004744 251 CKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAK 330 (732)
Q Consensus 251 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 330 (732)
....++++|.+.|..+.+.+.. |...|.-+.-.-.+.|+++.....-....+... .....|..++.++.-.|+...|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888877543 566666666666777787777777766666422 24566777777788888888888
Q ss_pred HHHHHHHHCC-CCCCHHhHHHHH------HHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHH
Q 004744 331 EVLDEMLQMG-LSPDTATYNTLL------VESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYF 403 (732)
Q Consensus 331 ~~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~ 403 (732)
.++++..+.- -.|+...|.-.. ....+.|..++|.+.+...... +......-..-...+.+.+++++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 8888777543 234544443222 3345677778887776655432 1112233345566778888999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHH-HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004744 404 REMKSAGLVPDNVLYTIIIN-GYCRNGFVLEAL-KMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGV 481 (732)
Q Consensus 404 ~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 481 (732)
..++.. .||..-|...+. ++.+..+.-+++ .+|....+.-+. ....-..=++......-.+...+++..+.+.|+
T Consensus 243 ~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 243 RRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 888876 466665554443 443344444444 455554443111 110000111111112334455566777777776
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 004744 482 FPDFYTFTTLIHGHCKDGNMNKALNLFDIMT----QKS----------IKPDIVT--YNTLIDGFCKVGEMEKANKLWAD 545 (732)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~----------~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 545 (732)
++ ++..+.+.|-.....+-..++.-.+. ..| -+|.... +-.++..|-+.|+++.|...++.
T Consensus 320 p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 54 34444444432222221111111111 111 1344443 34567788899999999999999
Q ss_pred HHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004744 546 MISRKISPNY-ISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD 624 (732)
Q Consensus 546 ~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 624 (732)
.+.+ .|+. ..|..=...+...|++++|..++++..+.+ .+|...-.--+.-..++.+.++|.++.....+.|. +
T Consensus 397 AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~ 471 (700)
T KOG1156|consen 397 AIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--G 471 (700)
T ss_pred Hhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--c
Confidence 8876 4443 345556678889999999999999998875 55655544566667788999999999998887764 2
Q ss_pred HHH--------HHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 004744 625 SIS--------YNTL--INGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 625 ~~~--------~~~l--i~~~~~~g~~~~A~~~~~~~~~ 653 (732)
... |-.+ +.+|.+.|++.+|++-|..+..
T Consensus 472 ~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 472 AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 211 1111 3556777888877766655543
No 53
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.59 E-value=2.1e-08 Score=101.92 Aligned_cols=590 Identities=13% Similarity=0.067 Sum_probs=339.3
Q ss_pred cChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHH
Q 004744 95 DNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFD 174 (732)
Q Consensus 95 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 174 (732)
+.+...+++.+.+.+..|. -..|.....-.+...|+-++|.......++ ....+.+.|.
T Consensus 21 kQYkkgLK~~~~iL~k~~e---HgeslAmkGL~L~~lg~~~ea~~~vr~glr------------------~d~~S~vCwH 79 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPE---HGESLAMKGLTLNCLGKKEEAYELVRLGLR------------------NDLKSHVCWH 79 (700)
T ss_pred HHHHhHHHHHHHHHHhCCc---cchhHHhccchhhcccchHHHHHHHHHHhc------------------cCcccchhHH
Confidence 3455667777776665554 245555555566777888888877766653 2345567788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004744 175 LVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDH 254 (732)
Q Consensus 175 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (732)
.++-.+....++++|+..|+.++..+.. |...|.-+.-.-.+.|+++-....-.+..+.. +.....|...+.++.-.|
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLG 157 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHH
Confidence 8888888888888888888888887766 77777777666777788887777777776643 445556777788888888
Q ss_pred ChhHHHHHHHHHHhCCC-CCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHhhCCCCCCHhh-HHHHHHHHHhcCCh
Q 004744 255 KIDSAKMFLCEMEQKGV-YPDTVTYNTLI------NAYCREGFLEEAFQLMNSMSGKGLKPGVFT-YNSLINGLCKKGRC 326 (732)
Q Consensus 255 ~~~~A~~~~~~~~~~g~-~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~ 326 (732)
+...|..++++..+... .|+...+.-.. ....+.|..++|++.+..-... +. |... -..-...+.+.+++
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHHHHHhhH
Confidence 88888888888776531 34544443322 3455678888888777655432 11 2222 23345567788889
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHH-HHHHcCCCHhHHH-HHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH
Q 004744 327 DRAKEVLDEMLQMGLSPDTATYNTLL-VESCRKENMSEAE-EIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFR 404 (732)
Q Consensus 327 ~~A~~~~~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~ 404 (732)
++|..++..++.. .||...|.... .++.+-.+.-++. .+|....+. .+.....-..=++......-.+..-.++.
T Consensus 236 EeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 236 EEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLR 312 (700)
T ss_pred HhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHH
Confidence 9999998888876 46666555444 4443333333444 555555442 11011111111111111222334445566
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HH-CC----------CCcCHHHHH--HHHHHHHhcCCHHH
Q 004744 405 EMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEM---LE-KG----------CVMDVVTYN--TILNGLCRAKMLTE 468 (732)
Q Consensus 405 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~-~~----------~~~~~~~~~--~li~~~~~~~~~~~ 468 (732)
.+.+.|+++- +..+...|-.....+-..++.-.+ +. .| -+|....|. .++..+-+.|+++.
T Consensus 313 ~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 313 PLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred HHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 6667776543 333333332211111001111111 11 10 134444443 45667778889999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 469 ADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMIS 548 (732)
Q Consensus 469 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 548 (732)
|..+++.....-+. -+.-|..-.+.+...|++++|..++++..+.+. +|...-.--..-..+.++.++|.++.....+
T Consensus 390 A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 390 ALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 99998888776221 233455556778888999999999988877643 3555544566667778888999888888777
Q ss_pred CCCCCCHH--------HHH--HHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC----------CHHHHHHHHHHHHHc
Q 004744 549 RKISPNYI--------SYG--ILINGYCSMGHVTEAFRLWYEMVGK-----GIKP----------TLVSCNTIIKGYCRS 603 (732)
Q Consensus 549 ~~~~~~~~--------~~~--~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~----------~~~~~~~l~~~~~~~ 603 (732)
.|. +.. +|- .=..+|.+.|++..|++-|..+.+. .-+. ...+|.-|+...-..
T Consensus 468 ~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L 545 (700)
T KOG1156|consen 468 EGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNL 545 (700)
T ss_pred ccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhh
Confidence 653 222 121 1235677778888887766655432 0122 233344444322211
Q ss_pred CC-------HHHHHHHHHHHHHCC-CC-CCHHHHHHHH----HHHHhc-CCHHHHHHHHHHHHH---------CCC--CC
Q 004744 604 GD-------ASKADEFLSKMVSEG-VD-PDSISYNTLI----NGFVRE-ENMDKAFALVSKMEN---------QGL--VP 658 (732)
Q Consensus 604 g~-------~~~A~~~~~~~~~~~-~~-~~~~~~~~li----~~~~~~-g~~~~A~~~~~~~~~---------~g~--~p 658 (732)
.+ ...|+++|-+|.+.. .. +.......+- ....+. .+-.+|.+--+.+.+ .|. .|
T Consensus 546 ~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~ 625 (700)
T KOG1156|consen 546 RSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDI 625 (700)
T ss_pred ccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Confidence 11 345777777776642 00 0111111111 111010 011122222221211 222 24
Q ss_pred CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 659 DVITYNVILTGFCRQG-RMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 659 ~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
|.. .++..+.+.. =+++|..++......+ .-+..+|..-...|.+.|++.-|.+.+++...
T Consensus 626 d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~-~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~ 687 (700)
T KOG1156|consen 626 DED---PFGEKLLKTEDPLEEARKFLPNLQHKG-KEKGETYILSFELYYRKGKFLLALACLNNAEG 687 (700)
T ss_pred CCc---chhhhHhhcCChHHHHHHHHHHHHHhc-ccchhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 433 3444455443 3678888888887753 33678888888999999999999999998863
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=2.5e-11 Score=116.08 Aligned_cols=286 Identities=14% Similarity=0.078 Sum_probs=159.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004744 428 NGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNL 507 (732)
Q Consensus 428 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (732)
.|++.+|.++..+-.+.+.. ....|..-+.+--+.|+.+.+-.++.+..+.-..++.....+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 34555555555444443322 23333333444444555555555555554442233344444444555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 004744 508 FDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYI-------SYGILINGYCSMGHVTEAFRLWYE 580 (732)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~ 580 (732)
..++.+.+.. ++.......+.|.+.|++.....++.++.+.+.-.+.. +|..+++-....+..+.-...|++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 5555544322 34444555555555555555555555555554433322 344454444444444444555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004744 581 MVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDV 660 (732)
Q Consensus 581 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 660 (732)
...+ .+.++..-.+++.-+.++|+.++|.++..+..+.+..|... .+ -.+.+-++.+.=++..++-.+. .+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---HH-HhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 5444 34455555666666777777777777777777665544411 11 2344556666666666665553 23344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 661 ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 661 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
-.+.+|+..|.+.+.|.+|...|+.+++ ..|+..+|..+.+++.+.|+.++|.+..++.+-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5667777777777777777777777776 667777777777777777777777777777654
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.1e-14 Score=144.35 Aligned_cols=261 Identities=15% Similarity=0.155 Sum_probs=103.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004744 420 IIINGYCRNGFVLEALKMRDEMLEKG-CVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKD 498 (732)
Q Consensus 420 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 498 (732)
.+...+.+.|++++|++++++..... ...+...|..+.......++.+.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666777778888887775544433 2335556666666667778888888888888776544 45556666666 678
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004744 499 GNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRK-ISPNYISYGILINGYCSMGHVTEAFRL 577 (732)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 577 (732)
+++++|..++....+.. ++...+...+..+...++++++..+++++.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887765542 455666777778888888888888888876532 345677788888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004744 578 WYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLV 657 (732)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 657 (732)
+++.++.. |.|....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+..+++..+. .
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~ 244 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--N 244 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--S
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--c
Confidence 88888873 4467778888888888888888888888776643 345566778888888889999999999888873 4
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 658 P-DVITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 658 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
| |+.+...++.++...|+.++|..+.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 4 666778888888888999999888877654
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.2e-12 Score=132.92 Aligned_cols=287 Identities=15% Similarity=0.051 Sum_probs=189.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004744 220 WVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGV--YPDTVTYNTLINAYCREGFLEEAFQL 297 (732)
Q Consensus 220 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~ 297 (732)
+.++|...|..... .+..+..+...+..+|...+++++|+++|+.+.+... .-+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 46677777777433 2344556666777888888888888888888776632 1255666665543221 112222
Q ss_pred H-HHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCC
Q 004744 298 M-NSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGV 376 (732)
Q Consensus 298 ~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 376 (732)
+ +++.+. -+-.+.+|.++..+|.-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 222222 12257788888888888888888888888888753 23667788777777788888888888887776532
Q ss_pred CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 004744 377 APDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTI 456 (732)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 456 (732)
. +-..|.-+...|.+.++++.|+-.|++..+.+.. +.+....+...+-+.|+.++|+.++++....++. |+..--..
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 2 4445556777788888888888888877766433 4555566666777777777787777777766555 44444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004744 457 LNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIK 517 (732)
Q Consensus 457 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 517 (732)
+..+...+++++|...++++.+.-+. +...+..+...|.+.|+.+.|+.-|..+...+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 55666677777777777777765332 5556667777777777777777777776665433
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.8e-10 Score=107.80 Aligned_cols=453 Identities=10% Similarity=0.067 Sum_probs=291.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 004744 212 LGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFL 291 (732)
Q Consensus 212 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 291 (732)
+.-+....++..|+.+++.....+-+....+-.-+..++.+.|++++|...+..+.... .|+...+-.|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 33455667888888888876544322222233334567788999999999999987754 56777787888888888999
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHH
Q 004744 292 EEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEM 371 (732)
Q Consensus 292 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 371 (732)
.+|..+.....+ ++-.-..|.+.-.+.|+-++-..+...+... ..--.+|.......-.+.+|++++..+
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999988776544 4555566677777888888888877776542 122234555555566789999999999
Q ss_pred HhCCCCCCHhHHHHHH-HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH
Q 004744 372 SRRGVAPDIVSFSTLI-GIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDV 450 (732)
Q Consensus 372 ~~~g~~~~~~~~~~l~-~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 450 (732)
...+ |+....|.-+ -+|.+..-++-+.+++.-..+. ++.++...+..+....+.=.-..|..-..++.+.+...
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 8763 4555555444 4567788888888888777664 33334444544443333322233333344444432211
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004744 451 VTYNTILNGLCRA-----KMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNT 525 (732)
Q Consensus 451 ~~~~~li~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 525 (732)
...+.-+++. +.-+.|.+++-.+.+. -+..-..|+--|.+++++++|..+.+++... .|-......
T Consensus 253 ---~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKg 323 (557)
T KOG3785|consen 253 ---YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKG 323 (557)
T ss_pred ---chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHH
Confidence 1123334443 3457788887776654 2334556777789999999999998876432 233333222
Q ss_pred HHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004744 526 LIDGFCKVG-------EMEKANKLWADMISRKISPNYI-SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTII 597 (732)
Q Consensus 526 li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 597 (732)
++ +...| .+.-|.+.|+-.-+.+..-|.. --..+.+.+.-..++++.+..++.+..--...|.+.+ .+.
T Consensus 324 vv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~A 400 (557)
T KOG3785|consen 324 VV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLA 400 (557)
T ss_pred HH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHH
Confidence 22 23333 3556777776555444333322 2334555666667899999888888766444455555 478
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCC
Q 004744 598 KGYCRSGDASKADEFLSKMVSEGVDPDSISY-NTLINGFVREENMDKAFALVSKMENQGLVPDVITY-NVILTGFCRQGR 675 (732)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~ 675 (732)
.+++..|++.+|+++|-++....++ |..+| ..|..+|.+.++.+-|..++-++.. +.+..+. ..+...|.+.+.
T Consensus 401 QAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~e 476 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANE 476 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999877654444 44455 5567889999999999777655443 3344444 445567889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHH
Q 004744 676 MHDSELILWRMIEKGLNPDRSTY 698 (732)
Q Consensus 676 ~~~A~~~~~~~~~~g~~p~~~~~ 698 (732)
+=-|.+.|..+.. .+|+++.|
T Consensus 477 FyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 477 FYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHhhhHHHc--cCCCcccc
Confidence 9999999988877 66765544
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=3.5e-11 Score=111.40 Aligned_cols=309 Identities=14% Similarity=0.105 Sum_probs=224.2
Q ss_pred hccCCChHHHHHHHHhhccChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHH
Q 004744 77 YQFRLNSVIIVEVLYRLRDNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIV 156 (732)
Q Consensus 77 ~~~~l~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (732)
...+++...+..+=.-..+.++.|...|-.+....| .+..+--+|.+.+-+.|..+.|+.+.+.++.+.+.+..
T Consensus 31 qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~---~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~--- 104 (389)
T COG2956 31 QANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDP---ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFE--- 104 (389)
T ss_pred HHhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcCc---hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchH---
Confidence 345667776666655556788999999987776554 36677789999999999999999999988865433221
Q ss_pred HhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 004744 157 DSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGI 236 (732)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 236 (732)
.-..+.-.|++-|...|.+|.|.++|..+.+.+.. -..+...|+..|-+..+++.|+++-++..+.+.
T Consensus 105 -----------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 105 -----------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred -----------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 12445567889999999999999999999886533 566788899999999999999999999988764
Q ss_pred CCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhh
Q 004744 237 ELNVY----TLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFT 312 (732)
Q Consensus 237 ~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 312 (732)
.+... .|--+...+....+++.|..++.+..+.+.+ .+.+-..+.+.+...|+++.|.+.++...+.+..--..+
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 33322 2334444444567888999999998887533 455566677888899999999999999988865545667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 004744 313 YNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSR 392 (732)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 392 (732)
...|..+|.+.|+.++....+.++.+.. ++...-..+...-....-.+.|...+.+-+++ .|+...+..++.....
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhc
Confidence 7888889999999999999999888763 33333344444444445566666666555544 4788888888876654
Q ss_pred ---CCCHHHHHHHHHHHHH
Q 004744 393 ---NGQLDRALMYFREMKS 408 (732)
Q Consensus 393 ---~g~~~~A~~l~~~~~~ 408 (732)
.|...+.+.+++.|..
T Consensus 328 daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 328 DAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cccccchhhhHHHHHHHHH
Confidence 3345555556666543
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=4.2e-11 Score=110.90 Aligned_cols=286 Identities=15% Similarity=0.186 Sum_probs=165.7
Q ss_pred CCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCH
Q 004744 358 KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDN------VLYTIIINGYCRNGFV 431 (732)
Q Consensus 358 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~------~~~~~li~~~~~~g~~ 431 (732)
..+.++|.+.|-+|.+.... +..+--+|.+.|.+.|..|.|+++.+.+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 34556666666666654221 3444455666666666666666666666554 221 2334455666666777
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 004744 432 LEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDF----YTFTTLIHGHCKDGNMNKALNL 507 (732)
Q Consensus 432 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~ 507 (732)
+.|..+|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 7777777766664322 3445556667777777777777777776665544322 1344455555556677777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004744 508 FDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIK 587 (732)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 587 (732)
+++..+.+.+ .+..--.+.+.+...|+++.|.+.|+.+.+.++.--..+...|..+|.+.|+.++....+..+.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 7777665433 3344445556667777777777777777776444334456667777777777777777777776652
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHH
Q 004744 588 PTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFV---REENMDKAFALVSKMEN 653 (732)
Q Consensus 588 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~ 653 (732)
+....-..+........-.+.|..++.+-+.. .|+...+..+++... ..|...+.+.+++.|+.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333333333333333444555554444432 467766666666543 23445555555665554
No 60
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=3.6e-12 Score=129.47 Aligned_cols=291 Identities=13% Similarity=0.030 Sum_probs=231.9
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHH
Q 004744 184 RKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGI--ELNVYTLNIMVNALCKDHKIDSAKM 261 (732)
Q Consensus 184 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (732)
-+.++|+..|.+....-.. +......+..+|...+++++|.++|+.+.+... -.+..+|+..+.-+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 4688999999997665333 446678889999999999999999999987541 24566787777654332 1222
Q ss_pred -HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004744 262 -FLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMG 340 (732)
Q Consensus 262 -~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 340 (732)
+-+.+.+.. +-...+|.++.+.|.-+++.+.|++.|++.+..+.. ...+|+.+.+-+.....+|.|...|+..+...
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 222333332 225789999999999999999999999999986432 78899999999999999999999999988643
Q ss_pred CCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004744 341 LSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTI 420 (732)
Q Consensus 341 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~ 420 (732)
+.+-.+|.-+...|.+.++++.|+-.|+++.+.+.. +.+....+...+-+.|+.|+|+++++++...+.+ |+..-..
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 233446667788999999999999999999987654 7788888899999999999999999999887544 5555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 421 IINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDF 485 (732)
Q Consensus 421 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 485 (732)
.+..+...++.++|+..++++.+.-+. +..++..+...|-+.|+.+.|+.-|.-+.+.++++..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 677788899999999999999986444 6778888999999999999999999999887665443
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.55 E-value=3.5e-09 Score=109.67 Aligned_cols=512 Identities=13% Similarity=0.039 Sum_probs=284.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHH---HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004744 180 YVQARKLREGSEVFRLLRNKGICFSINACNSLLGGL---VKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKI 256 (732)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (732)
+.+.+..++++.-+.....++...+..++..+..++ ...|+.+++ .+-..+..-.-|....+.+.+.-
T Consensus 237 w~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilsl------- 307 (799)
T KOG4162|consen 237 WKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSL------- 307 (799)
T ss_pred hcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHH-------
Confidence 344566677777777777776665655555544332 233444444 22222222122221111111110
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004744 257 DSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEM 336 (732)
Q Consensus 257 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 336 (732)
.-.+.++....+.-|...|..|.-+....|+++.+.+.|++....-+. ....|..+...|...|.-..|..+++.-
T Consensus 308 ---m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~ 383 (799)
T KOG4162|consen 308 ---MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRES 383 (799)
T ss_pred ---HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 012233333334446777777777888888888888888877654222 5667778888888888888888888776
Q ss_pred HHCCCCCC-HHhHHHHHHHH-HcCCCHhHHHHHHHHHHhC--CC--CCCHhHHHHHHHHHHhC-----------CCHHHH
Q 004744 337 LQMGLSPD-TATYNTLLVES-CRKENMSEAEEIFCEMSRR--GV--APDIVSFSTLIGIFSRN-----------GQLDRA 399 (732)
Q Consensus 337 ~~~g~~~~-~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~--g~--~~~~~~~~~l~~~~~~~-----------g~~~~A 399 (732)
....-.|+ ...+-..-..| -+.+.+++++++-.++... +. .-....|..+.-+|... ....++
T Consensus 384 ~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 384 LKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred cccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 54432233 23332222222 2356666666666555541 11 01233344444333321 113456
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004744 400 LMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLER 479 (732)
Q Consensus 400 ~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 479 (732)
++.+++..+.+.. |+.+...+.--|+..++++.|++...+..+-+..-+...|..+.-.+...+++.+|+.+.+...+.
T Consensus 464 lqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 464 LQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 6666666554332 222222333346666777777777777777655557777777777777777777777777766543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHH
Q 004744 480 GVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISR--KISPNYIS 557 (732)
Q Consensus 480 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 557 (732)
-.. |......-++.-...++.++|+.....++.- .-+..-... .++-....+....+.-. .......+
T Consensus 543 ~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~-------~~~~g~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 543 FGD-NHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQ-------TLDEGKLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred hhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhh-------hhhhhhhhhhhcccccCcccccccchh
Confidence 111 1111112222223356666666666555431 000000000 11111111111111100 01111122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004744 558 YGILINGYCSMGHVTEAFRLWYEMVGKGIK--PT------LVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYN 629 (732)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 629 (732)
+..+.......+ +.+-.-.. +...-.. |+ ...|......+.+.+..++|...+.+..... .-....|.
T Consensus 613 sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~ 688 (799)
T KOG4162|consen 613 SRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYY 688 (799)
T ss_pred hHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHH
Confidence 222222111111 11000000 1111111 22 2345556677888899999998888887642 23455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCC-CHHHHHHHHHHH
Q 004744 630 TLINGFVREENMDKAFALVSKMENQGLVPDV-ITYNVILTGFCRQGRMHDSEL--ILWRMIEKGLNP-DRSTYTTLINGH 705 (732)
Q Consensus 630 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p-~~~~~~~l~~~~ 705 (732)
.....+...|.+++|.+.|..... +.|+. .+..+++..+.+.|+-.-|.. ++..+++ ++| +...|..++..+
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVF 764 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHH
Confidence 677788889999999999999988 67764 578899999999998887777 9999999 778 579999999999
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004744 706 VSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 706 ~~~g~~~~A~~~~~~m~~ 723 (732)
.+.|+.++|.+.|.-..+
T Consensus 765 k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHccchHHHHHHHHHHHh
Confidence 999999999999998875
No 62
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.52 E-value=9.6e-10 Score=116.33 Aligned_cols=584 Identities=10% Similarity=-0.031 Sum_probs=291.4
Q ss_pred ccChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHH
Q 004744 94 RDNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIF 173 (732)
Q Consensus 94 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 173 (732)
+.+...|+..|=...+..|.+ ...|+.|.++|...-+...|...|+.+. .-++.+...+
T Consensus 471 rK~~~~al~ali~alrld~~~---apaf~~LG~iYrd~~Dm~RA~kCf~KAF------------------eLDatdaeaa 529 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSL---APAFAFLGQIYRDSDDMKRAKKCFDKAF------------------ELDATDAEAA 529 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCCchhhhhH
Confidence 345555555555545544443 4577778887777666667777777664 3345567777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004744 174 DLVIRTYVQARKLREGSEVFRLLRNKGIC-FSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCK 252 (732)
Q Consensus 174 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (732)
......|++...++.|..+.-..-+..+. .-...|..+.-.+.+.++...|+..|+...+.. |.|...|..+..+|.+
T Consensus 530 aa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~ 608 (1238)
T KOG1127|consen 530 AASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPE 608 (1238)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHh
Confidence 78888888888888888773332222111 111233444455667778888888888887765 6677788888888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC------CCCCCHhhHHHHHHHHHhcCCh
Q 004744 253 DHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGK------GLKPGVFTYNSLINGLCKKGRC 326 (732)
Q Consensus 253 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~ 326 (732)
+|++..|.++|.+.....+. +...---...+.|..|.+++|+..+...... +...-..++..+...+.-.|-.
T Consensus 609 sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~ 687 (1238)
T KOG1127|consen 609 SGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQ 687 (1238)
T ss_pred cCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 88888888888877766322 2222222334556678888888877776542 1111223333333344444444
Q ss_pred hHHHHHHHHHHHC-------CCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCH---
Q 004744 327 DRAKEVLDEMLQM-------GLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQL--- 396 (732)
Q Consensus 327 ~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~--- 396 (732)
.+|..++++-++. ....+...|-.+. +|..+|-... .+ .|+......+..-.-+.+..
T Consensus 688 ~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~ 755 (1238)
T KOG1127|consen 688 KKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKN 755 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcch
Confidence 4444444443321 1111122222111 2222222222 00 11211111111111111111
Q ss_pred H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 004744 397 D---RALMYFREMKSAGLVPDNVLYTIIINGYCR----N----GFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKM 465 (732)
Q Consensus 397 ~---~A~~l~~~~~~~~~~~~~~~~~~li~~~~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 465 (732)
| -+.+.+-.-.+ ...+..+|..++..|.+ . .+...|+..+.+.++.... +..+||.|.-. ...|.
T Consensus 756 d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gn 831 (1238)
T KOG1127|consen 756 DLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGN 831 (1238)
T ss_pred hHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccch
Confidence 1 11111111111 11123344444443333 1 1223556666665554322 56666666554 44466
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004744 466 LTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWAD 545 (732)
Q Consensus 466 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 545 (732)
+.-|...|-+-....+. ...+|..+...+.+..+++.|...|.......+ .+...|--..-.....|+.-++..+|..
T Consensus 832 va~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 832 VACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 66666666555544333 556677777777777777777777776655422 2344443333333455666666666654
Q ss_pred HH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------CCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004744 546 MI----SRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVG---------KGIKPTLVSCNTIIKGYCRSGDASKADEF 612 (732)
Q Consensus 546 ~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 612 (732)
-- ..|--++..-|-........+|+.++-+...+.+-. .+.+.+...|........+.+.++.|.++
T Consensus 910 s~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~el 989 (1238)
T KOG1127|consen 910 SDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALEL 989 (1238)
T ss_pred hHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHH
Confidence 21 122233443333333334455555544333332211 13455566666666666666666666666
Q ss_pred HHHHHHC-CCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 613 LSKMVSE-GVDPDSISYNT----LINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMI 687 (732)
Q Consensus 613 ~~~~~~~-~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 687 (732)
..+.+.. ..+-+...|+. +...++..|.++.|..-+..... ..+..+-..-+.. .-.|+++++.+.|+++.
T Consensus 990 a~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aL 1065 (1238)
T KOG1127|consen 990 ATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQAL 1065 (1238)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHh
Confidence 6554321 11223333332 23344455566655443332221 1122221111112 23467777777777776
Q ss_pred H-cCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 688 E-KGLNPDR-STYTTLINGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 688 ~-~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 722 (732)
. ..-+.|. +....++.+....|..+.|...+-+..
T Consensus 1066 sis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1066 SISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 5 1112222 334445555566666666666655544
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=2.3e-10 Score=109.59 Aligned_cols=293 Identities=13% Similarity=0.113 Sum_probs=180.7
Q ss_pred CCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004744 358 KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKM 437 (732)
Q Consensus 358 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 437 (732)
.|++.+|++...+-.+.+-. ....|..-+.+.-+.|+.+.+-+++.+..+..-.++...+-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 56666666666665555433 23344445555566666666666666665543334444555555556666666666666
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004744 438 RDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIK 517 (732)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 517 (732)
.+++.+.++. ++........+|.+.|++.....++..+.+.+.-.|...- +
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~----------- 226 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R----------- 226 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H-----------
Confidence 6666655544 4555556666666666666666666666655543222110 0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004744 518 PDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTII 597 (732)
Q Consensus 518 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 597 (732)
....+|..+++-....+..+.-...|+..... ...++..-.+++.-+.++|+.++|.++..+..+++..|+... .
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~ 301 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----L 301 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----H
Confidence 01123344444333333333334444444332 333556666777778888888888888888887766655221 2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004744 598 KGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMH 677 (732)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 677 (732)
-.+.+-++.+.-++..++..+.. +.++..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|+.+..++.+.|+..
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChH
Confidence 23456677777777777766642 23446777888888888888888888888887 5788888888888888888888
Q ss_pred HHHHHHHHHHH
Q 004744 678 DSELILWRMIE 688 (732)
Q Consensus 678 ~A~~~~~~~~~ 688 (732)
+|....++..-
T Consensus 379 ~A~~~r~e~L~ 389 (400)
T COG3071 379 EAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHH
Confidence 88888887764
No 64
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.6e-08 Score=107.03 Aligned_cols=582 Identities=13% Similarity=0.151 Sum_probs=310.5
Q ss_pred cChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCC------
Q 004744 95 DNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGS------ 168 (732)
Q Consensus 95 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 168 (732)
.+++.+.+|...+.... +.+.-.+.+..+........++.+++..+++.+.+....+...++..-....+
T Consensus 523 ~sPD~~~qFa~~l~Q~~----~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAI 598 (1666)
T KOG0985|consen 523 SSPDQALQFAMMLVQDE----EPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAI 598 (1666)
T ss_pred cChhHHHHHHHHhhccC----CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHH
Confidence 45666666654443222 23455667777777777778888888777754433332333333332211111
Q ss_pred ------chHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHH-----HHHHHHcCChHHHHHHHHHHHHcCCC
Q 004744 169 ------NSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSL-----LGGLVKIGWVDLAREVYAEVVRSGIE 237 (732)
Q Consensus 169 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-----l~~~~~~g~~~~a~~~~~~~~~~~~~ 237 (732)
.-+-|..+.+.|-++|....|++.|..+.+.. -......+ +..+...-.++++.+.+..|+..++.
T Consensus 599 LgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIK---R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~Nir 675 (1666)
T KOG0985|consen 599 LGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIK---RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIR 675 (1666)
T ss_pred HhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHH---HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 11227788899999999999998888765421 11112111 23445556789999999999988888
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh----
Q 004744 238 LNVYTLNIMVNALCKDHKIDSAKMFLCEMEQK-----------GVYPDTVTYNTLINAYCREGFLEEAFQLMNSMS---- 302 (732)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---- 302 (732)
.|..+.-.+..-|+..=-.+.-.++|+..... ++.-|..+.--.|.+-|+.|++.+..++.++-.
T Consensus 676 qNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~Ydp 755 (1666)
T KOG0985|consen 676 QNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDP 755 (1666)
T ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCH
Confidence 88877777777777666666666666665432 123355555667888899999988887766421
Q ss_pred --------hC---------------CCCCCHhhH------HHHHHHHH--------------------------------
Q 004744 303 --------GK---------------GLKPGVFTY------NSLINGLC-------------------------------- 321 (732)
Q Consensus 303 --------~~---------------g~~p~~~~~------~~li~~~~-------------------------------- 321 (732)
+. ++.+|.+.| ...|..|.
T Consensus 756 ErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v 835 (1666)
T KOG0985|consen 756 ERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSV 835 (1666)
T ss_pred HHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHH
Confidence 11 111122211 01111222
Q ss_pred --------------hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHH-HH---HHH-----HHH-h----
Q 004744 322 --------------KKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEA-EE---IFC-----EMS-R---- 373 (732)
Q Consensus 322 --------------~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~---~~~-----~~~-~---- 373 (732)
+.+++.--...++..++.|. .|..++|+|...|...++-.+- ++ .++ +-- +
T Consensus 836 ~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 836 RGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPH 914 (1666)
T ss_pred hccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCc
Confidence 23333344445555556663 5777888887776654432211 10 111 110 0
Q ss_pred -------CCCC--------CCHhHHHHHHHHHHhCCCHHHHH-----------HHHHHHHHCCC--CCCHHHHHHHHHHH
Q 004744 374 -------RGVA--------PDIVSFSTLIGIFSRNGQLDRAL-----------MYFREMKSAGL--VPDNVLYTIIINGY 425 (732)
Q Consensus 374 -------~g~~--------~~~~~~~~l~~~~~~~g~~~~A~-----------~l~~~~~~~~~--~~~~~~~~~li~~~ 425 (732)
+|-- -.-..|....+.+.+..+.+--. ++.++....++ ..|+...+.-+.++
T Consensus 915 lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAf 994 (1666)
T KOG0985|consen 915 LACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAF 994 (1666)
T ss_pred eEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHH
Confidence 1100 01122344445555555543222 34455554433 23555666778888
Q ss_pred HHcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHH---------------------------hcCCHHHHHHHHHHH
Q 004744 426 CRNGFVLEALKMRDEMLEKGC--VMDVVTYNTILNGLC---------------------------RAKMLTEADDLFNEM 476 (732)
Q Consensus 426 ~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~---------------------------~~~~~~~A~~~~~~~ 476 (732)
...+-..+-+++++++.-... .-+...-|.|+-... .++-+++|..+|+..
T Consensus 995 MtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf 1074 (1666)
T KOG0985|consen 995 MTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF 1074 (1666)
T ss_pred HhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh
Confidence 888999999999988865421 112222233332222 233344444444432
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004744 477 LERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYI 556 (732)
Q Consensus 477 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 556 (732)
-. +....+.|+. .-++++.|.+.-+... .+..|+.+..+-...|.+.+|.+-|-+. .|+.
T Consensus 1075 ~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps 1134 (1666)
T KOG0985|consen 1075 DM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPS 1134 (1666)
T ss_pred cc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcH
Confidence 11 2222222222 2233344433333221 3455666666666666666666655322 1556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004744 557 SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFV 636 (732)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 636 (732)
.|..+++...+.|.+++-.+.+....++...|...+ .++-+|++.++..+-++++. .||......+.+-|.
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf 1205 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCF 1205 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHh
Confidence 666666666667777776666666665544444433 45566666666655444431 255555555555565
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------------------HcCCC--
Q 004744 637 REENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMI----------------------EKGLN-- 692 (732)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------------~~g~~-- 692 (732)
..|.++.|.-+|...- -|..|...+...|++..|....+++- -.|+.
T Consensus 1206 ~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~ii 1276 (1666)
T KOG0985|consen 1206 EEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNII 1276 (1666)
T ss_pred hhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEE
Confidence 6666655555444332 24444444444444444433322221 11222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 693 PDRSTYTTLINGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 693 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 722 (732)
-...-...|+.-|...|-++|-+.+++..+
T Consensus 1277 vhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1277 VHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred EehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 234456677888888888888888877665
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=1.1e-09 Score=114.57 Aligned_cols=258 Identities=16% Similarity=0.126 Sum_probs=122.0
Q ss_pred CCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcC-------CCCCchHHHHHHHHHHHHcCC
Q 004744 113 NVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYS-------PCGSNSLIFDLVIRTYVQARK 185 (732)
Q Consensus 113 ~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~l~~~~~~~g~ 185 (732)
|..++.+||..+|.-|+..|..+-|- +|.-|-.++-.....+++.++.+.+ ...+.+.+|+.|...|.+.|+
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGD 98 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGD 98 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccc
Confidence 56677899999999999999998877 6655543332222333444443321 112456667777777777766
Q ss_pred hHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004744 186 LREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVV-RSGIELNVYTLNIMVNALCKDHKIDSAKMFLC 264 (732)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (732)
+.. ++..++- ...+...+...|.-..-..++..+. ..+.-||..+ ++.-..-.|-++.+.+++.
T Consensus 99 li~-fe~veqd-----------Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 99 LIL-FEVVEQD-----------LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHH-HHHHHHH-----------HHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHh
Confidence 544 2222221 1111112222222222222222110 0111122211 1122222334444444444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004744 265 EMEQKGVYPDTVTYNTLINAYCRE-GFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSP 343 (732)
Q Consensus 265 ~~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 343 (732)
.+....... .... .++-.... ..+++-..+.....+ .|++.+|..+++.-...|+.+.|..++.+|.+.|++.
T Consensus 164 ~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 164 KVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred hCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 333221110 0000 11111111 122222222222222 3566666666666666666666666666666666665
Q ss_pred CHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCC
Q 004744 344 DTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQ 395 (732)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 395 (732)
+..-|-.|+.+ .++..-+..++..|.+.|+.|+..|+..-+..+..+|.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 55554444443 55556666666666666666666666655555555444
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=5.4e-11 Score=129.14 Aligned_cols=236 Identities=11% Similarity=0.002 Sum_probs=161.1
Q ss_pred CCCCchHHHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 004744 165 PCGSNSLIFDLVIRTYVQA---------RKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSG 235 (732)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 235 (732)
..|.++..|..+..+|... +++++|...++++.+.++. +..++..+...+...|++++|...|+++++.+
T Consensus 290 ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 368 (553)
T PRK12370 290 MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS 368 (553)
T ss_pred cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3555667777777665532 3478899999999888776 78888888888888899999999999988875
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 004744 236 IELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNS 315 (732)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 315 (732)
|.+...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++|.+.++++.....+-+...+..
T Consensus 369 -P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~ 446 (553)
T PRK12370 369 -PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSM 446 (553)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHH
Confidence 666777888888888899999999999998887443 222333445456678888889888888876532224555777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCC
Q 004744 316 LINGLCKKGRCDRAKEVLDEMLQMGLSPD-TATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNG 394 (732)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 394 (732)
+...+...|+.++|...+.++... .|+ ....+.+...|+..| ++|...++.+.+..-. .......+...+.-.|
T Consensus 447 la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~-~~~~~~~~~~~~~~~g 521 (553)
T PRK12370 447 QVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR-IDNNPGLLPLVLVAHG 521 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH-hhcCchHHHHHHHHHh
Confidence 778888888888888888887654 333 334555556667666 4677766665542111 1111111444455556
Q ss_pred CHHHHHHHHHHHHHC
Q 004744 395 QLDRALMYFREMKSA 409 (732)
Q Consensus 395 ~~~~A~~l~~~~~~~ 409 (732)
+-+.+..+ +++.+.
T Consensus 522 ~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 522 EAIAEKMW-NKFKNE 535 (553)
T ss_pred hhHHHHHH-HHhhcc
Confidence 66666555 665554
No 67
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=4.3e-08 Score=101.80 Aligned_cols=519 Identities=15% Similarity=0.131 Sum_probs=269.6
Q ss_pred ChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004744 117 SSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLL 196 (732)
Q Consensus 117 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 196 (732)
+-..|..|.+.+.+.++++-|.-.+-.|-...|..... .+- . .+. ..-..+.-.-.+.|++++|..+|++-
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR--~a~----q-~~~--e~eakvAvLAieLgMlEeA~~lYr~c 826 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALR--RAQ----Q-NGE--EDEAKVAVLAIELGMLEEALILYRQC 826 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHH--HHH----h-CCc--chhhHHHHHHHHHhhHHHHHHHHHHH
Confidence 56789999999999999999988887775433322111 100 0 111 11122233345678899999999887
Q ss_pred HHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004744 197 RNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTV 276 (732)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 276 (732)
.+. ..|=+.|...|.+++|.++-+.--+..+. .||-....-+-..++.+.|++.|++.-.. --.
T Consensus 827 kR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~h----afe 890 (1416)
T KOG3617|consen 827 KRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVH----AFE 890 (1416)
T ss_pred HHH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCCh----HHH
Confidence 653 34446677788999998887754333222 24444445555567788888887764321 111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 004744 277 TYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESC 356 (732)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 356 (732)
+...|. .+......+.+.+. |...|.-....+-..|+.+.|+.++..... |.+++...|
T Consensus 891 v~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 891 VFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 111111 12222223333332 333344444555567888888888876653 456777777
Q ss_pred cCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---
Q 004744 357 RKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLE--- 433 (732)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~--- 433 (732)
-.|+.++|-++-++- .|......+.+.|-..|++.+|...|.+.. ++...|+.| +.+++++
T Consensus 950 ~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlc-KEnd~~d~L~ 1013 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLC-KENDMKDRLA 1013 (1416)
T ss_pred eccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHH-HhcCHHHHHH
Confidence 888888887776543 266677778888888888888888887654 233333332 2222222
Q ss_pred -------------HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHH--cCCCCCHHHHHH
Q 004744 434 -------------ALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNE--------MLE--RGVFPDFYTFTT 490 (732)
Q Consensus 434 -------------A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~--------~~~--~~~~~~~~~~~~ 490 (732)
|-+.|++.- . -....+..|-+.|.+.+|+++--+ ++. .+...|+...+.
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 222222211 0 112223346667777766654321 111 233346666677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHH
Q 004744 491 LIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISR-KISPNYI----SYGILINGY 565 (732)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----~~~~li~~~ 565 (732)
-.+.++...++++|..++-...+. ...+. +|+..++.-..++-+.|.-. +-.|+.. ....+...|
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c 1155 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELC 1155 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHH
Confidence 777777777777777776554431 11121 23333333333332222211 1122222 334455556
Q ss_pred HhcCCHHHHHHHHHHHHhC---------------------------------------CCCCCHHHHHHHHHHHHHcCCH
Q 004744 566 CSMGHVTEAFRLWYEMVGK---------------------------------------GIKPTLVSCNTIIKGYCRSGDA 606 (732)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~~~g~~ 606 (732)
.++|.+..|-+-|.+.-.+ +...|+.+...++..|-+..-+
T Consensus 1156 ~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqaf 1235 (1416)
T KOG3617|consen 1156 LQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAF 1235 (1416)
T ss_pred HhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhH
Confidence 6666666665555443211 1122222222222222222222
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------cCC
Q 004744 607 SKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCR-----------QGR 675 (732)
Q Consensus 607 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-----------~g~ 675 (732)
+.--.+|.....- ....|..+- -..|-+++|.+.+.++..++ -....++.|-.-... ..+
T Consensus 1236 d~LanFY~~cAqi----Eiee~q~yd---Ka~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD 1306 (1416)
T KOG3617|consen 1236 DHLANFYKSCAQI----EIEELQTYD---KAMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKED 1306 (1416)
T ss_pred HHHHHHHHHHHHh----hHHHHhhhh---HHhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2211111111110 000010000 01344566666666666432 112223333222111 124
Q ss_pred HHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 676 MHDSELILWRMIEKGLNPD----RSTYTTLINGHVSQNNLKEAFRFHDEMLQR 724 (732)
Q Consensus 676 ~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 724 (732)
..+.++-.+.|.+..+.|| ...|..|+..|....+|..|.+.+++|..+
T Consensus 1307 ~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1307 AADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 5555566666776555554 356888999999999999999999999865
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.8e-08 Score=96.74 Aligned_cols=294 Identities=13% Similarity=0.029 Sum_probs=210.3
Q ss_pred HhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 004744 391 SRNGQLDRALMYFREMKSAG-LVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEA 469 (732)
Q Consensus 391 ~~~g~~~~A~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 469 (732)
+-.++-..|...+--+.... ++-+......+.+.+...|+.++|...|++....++. +..........+.+.|++++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhH
Confidence 33444444444443333322 3445567777888888888888888888877665322 222233334446678888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 470 DDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISR 549 (732)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 549 (732)
..+...+....- .....|..-........+++.|+.+-++.++.+.. +...+-.-...+...|++++|.-.|+..+..
T Consensus 286 ~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 877777765421 13333444445556678899999998888876433 4455555556778899999999999988876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCC-HH
Q 004744 550 KISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTII-KGYCR-SGDASKADEFLSKMVSEGVDPD-SI 626 (732)
Q Consensus 550 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~~~-~~ 626 (732)
. +-+..+|..|+..|...|++.||.-+-+...+. ++.+..++..+. ..+.- ...-++|.+++++.+. +.|+ ..
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~ 439 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTP 439 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHH
Confidence 3 347889999999999999999999888877665 456667766553 33332 2336789999998876 4566 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 627 SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR 695 (732)
Q Consensus 627 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 695 (732)
.-+.+...+...|+.++++.++++... ..||....+.|++.+...+.+.+|...|..++. +.|+.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 567778889999999999999999988 688999999999999999999999999999998 88854
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=5.3e-11 Score=129.24 Aligned_cols=252 Identities=13% Similarity=0.075 Sum_probs=188.0
Q ss_pred cChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHh---------CCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCC
Q 004744 95 DNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVR---------GRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSP 165 (732)
Q Consensus 95 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (732)
.+++.|..+|+.+....|++ ..+|..+..++.. .+.+++|...+++++. .
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~---a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~------------------l 333 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNS---IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE------------------L 333 (553)
T ss_pred HHHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh------------------c
Confidence 34668889999988888874 5677777665542 2447889999998874 3
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004744 166 CGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNI 245 (732)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (732)
.+.++.++..+...+...|++++|+..|+++++.++. +...+..+..++...|++++|...++++++.+ |.+...+..
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~ 411 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGIT 411 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHH
Confidence 5677889999999999999999999999999999866 77889999999999999999999999999875 334444444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 004744 246 MVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGR 325 (732)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 325 (732)
++..+...|++++|...++++.+...+-+...+..+...+...|++++|...++++.... +.+....+.+...|+..|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH-
Confidence 555677789999999999998866322245567788889999999999999999976652 224455666667778777
Q ss_pred hhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCC
Q 004744 326 CDRAKEVLDEMLQMG-LSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRG 375 (732)
Q Consensus 326 ~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 375 (732)
++|...++++.+.. ..+....+ +-..|.-.|+-+.+..+ +++.+.|
T Consensus 490 -~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 -ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred -HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 48888888776531 12222222 33344556777777766 7776653
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=3.4e-08 Score=102.52 Aligned_cols=435 Identities=14% Similarity=0.030 Sum_probs=275.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 004744 236 IELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNS 315 (732)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 315 (732)
+..|...|..+.-++...|+++.+.+.|++....-+. ....|+.+...|.-.|.-..|..+++........|+..+--.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567778888888888889999999999988765433 567788888888888998889988888766543344433333
Q ss_pred HHH-HHH-hcCChhHHHHHHHHHHHC--CC--CCCHHhHHHHHHHHHcC-----------CCHhHHHHHHHHHHhCCCCC
Q 004744 316 LIN-GLC-KKGRCDRAKEVLDEMLQM--GL--SPDTATYNTLLVESCRK-----------ENMSEAEEIFCEMSRRGVAP 378 (732)
Q Consensus 316 li~-~~~-~~g~~~~A~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~g~~~ 378 (732)
++. .|. +.+..++++.+-.+++.. +. ......|..+.-+|... ....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 333 333 457777777777776652 11 22344555555555432 1245677788888776543
Q ss_pred CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 004744 379 DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILN 458 (732)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 458 (732)
|..+...+.--|...++++.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+.-.. |-.....-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhh
Confidence 444444455567788999999999999998877778899999999999999999999998887764111 1111111122
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCH
Q 004744 459 GLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQ--KSIKPDIVTYNTLIDGFCKVGEM 536 (732)
Q Consensus 459 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~ 536 (732)
.-..-++.+++......+... .-+.... ...++-....+....+.- ........++..+.......+..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~--we~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLAL--WEAEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHH--HHhhhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 223356677776666655532 0000000 111111112222221111 01111222332222211111100
Q ss_pred HHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004744 537 EKANKLWADMISRKISPN------YISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKAD 610 (732)
Q Consensus 537 ~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 610 (732)
......+.... ....|+ ...|......+.+.+..++|.-.+.+..+.. +-....|......+...|..++|.
T Consensus 627 ~~se~~Lp~s~-~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 627 AGSELKLPSST-VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred cccccccCccc-ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHH
Confidence 00000010000 011122 2245566777888899999988888887653 556667777777888899999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 611 EFLSKMVSEGVDPD-SISYNTLINGFVREENMDKAFA--LVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRM 686 (732)
Q Consensus 611 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 686 (732)
+.|...... .|+ +.+..++..++.+.|+..-|.. ++..+.+ +.| +...|..++..+.+.|+.++|...|..+
T Consensus 705 ~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 705 EAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 999988874 454 6678889999999998777777 9999998 455 6779999999999999999999999998
Q ss_pred HH
Q 004744 687 IE 688 (732)
Q Consensus 687 ~~ 688 (732)
.+
T Consensus 781 ~q 782 (799)
T KOG4162|consen 781 LQ 782 (799)
T ss_pred Hh
Confidence 87
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.6e-08 Score=101.72 Aligned_cols=459 Identities=13% Similarity=0.101 Sum_probs=245.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcC
Q 004744 177 IRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALC--KDH 254 (732)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g 254 (732)
++.+.+.|++++|+....+++..++. +...+..-+.++.+.++|++|+.+.+.-... ...+... +=.+|| +.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~-~~~~~~~---fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL-LVINSFF---FEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-hhcchhh---HHHHHHHHHcc
Confidence 56778899999999999999988755 7788888888899999999998655432110 0111111 234444 788
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH-HHhcCChhHHHHHH
Q 004744 255 KIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLING-LCKKGRCDRAKEVL 333 (732)
Q Consensus 255 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~ 333 (732)
+.++|...++-.... |..+...-...+.+.|++++|+++|+.+.+.+.+ .+...+.+ +...+-.-.+. +.
T Consensus 94 k~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~~-~~ 164 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQVQ-LL 164 (652)
T ss_pred cHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhHH-HH
Confidence 999999888833322 3446666677888999999999999999776433 22222211 11111111111 12
Q ss_pred HHHHHCCCCCCHHhHHH---HHHHHHcCCCHhHHHHHHHHHHhCC-------CCCCH-------hHHHHHHHHHHhCCCH
Q 004744 334 DEMLQMGLSPDTATYNT---LLVESCRKENMSEAEEIFCEMSRRG-------VAPDI-------VSFSTLIGIFSRNGQL 396 (732)
Q Consensus 334 ~~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~g-------~~~~~-------~~~~~l~~~~~~~g~~ 396 (732)
......| ..+|.. ....+...|++.+|++++....+.+ -.-+. .+-..+.-++...|+-
T Consensus 165 ---q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 165 ---QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred ---HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 2211223 222322 3445567888999998888773211 00000 1122344455666777
Q ss_pred HHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCCHH-HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 004744 397 DRALMYFREMKSAGLVPDNVL----YTIIINGYCRNGFVL-EALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADD 471 (732)
Q Consensus 397 ~~A~~l~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 471 (732)
++|..++...++.... |... -|.|+..-....-++ .++..++..... ..+.+..
T Consensus 241 ~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~--------------------l~~~~l~ 299 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK--------------------LAEFLLS 299 (652)
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHH--------------------hHHHHHH
Confidence 7777777776665432 3221 122221111111111 111111111100 0111111
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCC
Q 004744 472 LFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGF-CKVGEMEKANKLWADMISRK 550 (732)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~ 550 (732)
-|..-... ....-+.++..| .+..+.+.++...... ..|....-..+..+. ++...+.++.+++...-+..
T Consensus 300 ~Ls~~qk~----~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~ 371 (652)
T KOG2376|consen 300 KLSKKQKQ----AIYRNNALLALF--TNKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGH 371 (652)
T ss_pred HHHHHHHH----HHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC
Confidence 11111110 111112233332 2333444443333221 223322222222222 12224666777776666654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--C
Q 004744 551 ISPNYISYGILINGYCSMGHVTEAFRLWY--------EMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSE--G 620 (732)
Q Consensus 551 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 620 (732)
..-..++.-.++......|+++.|++++. .+.+.+..|. +...+...+.+.++.+.|..++.+.+.. .
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 33334555566677778888888888887 4444444444 3445566677777766677766666542 1
Q ss_pred CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 621 VDPDSI----SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRM 686 (732)
Q Consensus 621 ~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 686 (732)
-.+... ++.-++..-.+.|+-++|..+++++.+.+ ++|..+...++.+|++. +.+.|..+-+++
T Consensus 450 ~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 450 QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 112222 33333444457799999999999999852 56778888899898876 678887776654
No 72
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=3.9e-07 Score=96.96 Aligned_cols=230 Identities=11% Similarity=0.126 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004744 451 VTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGF 530 (732)
Q Consensus 451 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 530 (732)
..|..+..+-.+.|.+.+|++-|-+. -|+..|..++....+.|.+++-...+....++.-+|.+. +.|+-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 34444444444444444444444222 134444455555555555555555444444443333322 2344445
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004744 531 CKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKAD 610 (732)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 610 (732)
++.++..+-+++. ..|+......+.+-|...|.++.|.-+|.. ...|..+...+...|+++.|.
T Consensus 1177 Akt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHH
Confidence 5555444433332 123444444444444444555444444432 223444445555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004744 611 EFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKG 690 (732)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 690 (732)
..-+++ .+..+|-.+..+|...+.+.-|. |-..++-....-..-++.-|-..|.+++-+.+++..+-
T Consensus 1241 D~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG-- 1307 (1666)
T KOG0985|consen 1241 DAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG-- 1307 (1666)
T ss_pred HHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc--
Confidence 444332 23445555555555544443331 11111222333455566667777777777777666543
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004744 691 LNP-DRSTYTTLINGHVSQNNLKEAFRFH 718 (732)
Q Consensus 691 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 718 (732)
++- ....|+.|.-.|.+- +.++..+.+
T Consensus 1308 LERAHMgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1308 LERAHMGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred hhHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 443 345677776666543 344444333
No 73
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.41 E-value=2.9e-08 Score=105.51 Aligned_cols=549 Identities=11% Similarity=-0.002 Sum_probs=306.0
Q ss_pred ChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHH
Q 004744 96 NLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDL 175 (732)
Q Consensus 96 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 175 (732)
+...|.+.|+.+....+. +..++......|++....+.|.......-+.. +.. .| ...|--
T Consensus 507 Dm~RA~kCf~KAFeLDat---daeaaaa~adtyae~~~we~a~~I~l~~~qka---~a~----------~~---k~nW~~ 567 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDAT---DAEAAAASADTYAEESTWEEAFEICLRAAQKA---PAF----------AC---KENWVQ 567 (1238)
T ss_pred HHHHHHHHHHHHhcCCch---hhhhHHHHHHHhhccccHHHHHHHHHHHhhhc---hHH----------HH---Hhhhhh
Confidence 555677777766554433 67889999999999999999988744332211 000 00 122333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004744 176 VIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHK 255 (732)
Q Consensus 176 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (732)
++-.|.+.++...|+.-|+...+..|. |..+|..++.+|.+.|++..|.++|.++...+ |.+.+.---.....|..|+
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGK 645 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhh
Confidence 556688899999999999999998877 89999999999999999999999999887654 3344443344556788899
Q ss_pred hhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-------CCCCCCHhhHHHHHHHHHh
Q 004744 256 IDSAKMFLCEMEQKG------VYPDTVTYNTLINAYCREGFLEEAFQLMNSMSG-------KGLKPGVFTYNSLINGLCK 322 (732)
Q Consensus 256 ~~~A~~~~~~~~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~ 322 (732)
+.+|...++.....- ..--+.++-.+...+.-.|-..+|.+.+++.++ .....+...|..+..
T Consensus 646 Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd---- 721 (1238)
T KOG1127|consen 646 YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD---- 721 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH----
Confidence 999999988876531 011122333333333444555555555554432 211223333333332
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCH---h---HHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----
Q 004744 323 KGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENM---S---EAEEIFCEMSRRGVAPDIVSFSTLIGIFSR---- 392 (732)
Q Consensus 323 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~---- 392 (732)
|..+|-+.. .. .|+......+..-.-..+.. | -+.+.+-.-.+ ...+..+|..++..|.+
T Consensus 722 ------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 722 ------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred ------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHH
Confidence 233333322 11 22222222222212222222 1 11111111111 11134455555544433
Q ss_pred ----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 004744 393 ----NGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTE 468 (732)
Q Consensus 393 ----~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 468 (732)
..+...|...+.+..+.. .-+..+|+.|.-. ...|.+.-|...|-+-....+ ....+|..+...+.+..+++.
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEecccHHH
Confidence 122346777777776542 2255677766654 555677777666665555433 367788888888888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 469 ADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQ----KSIKPDIVTYNTLIDGFCKVGEMEKANKLWA 544 (732)
Q Consensus 469 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 544 (732)
|...|...+...+. |...|..........|+.-++..+|..--. .|--++..-|..........|+.++-+...+
T Consensus 869 A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ 947 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTAR 947 (1238)
T ss_pred hhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhh
Confidence 99999888877554 667777777667778888888888876221 2223344444333344455565554333332
Q ss_pred H----------HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHH----HHHHHHHcCCHHHH
Q 004744 545 D----------MISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGK-GIKPTLVSCNT----IIKGYCRSGDASKA 609 (732)
Q Consensus 545 ~----------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~----l~~~~~~~g~~~~A 609 (732)
+ ... +.+.+...|.......-..+.+.+|.++..+.+.. ....|...|+. +.+.++..|.++.|
T Consensus 948 ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A 1026 (1238)
T KOG1127|consen 948 KISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESA 1026 (1238)
T ss_pred hhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhH
Confidence 2 222 34446667777777777777777777776665421 11233444442 23344455666655
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 610 DEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQ-GLVPDV-ITYNVILTGFCRQGRMHDSELILWRMI 687 (732)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 687 (732)
..-+..... ..+......-+.. .-.++++++.+.|+++..- +-..|. +....++......+.-+.|...+-+..
T Consensus 1027 ~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1027 KKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 444332211 1111111111111 2246677777777776651 111122 233444444455566666665555544
Q ss_pred H
Q 004744 688 E 688 (732)
Q Consensus 688 ~ 688 (732)
.
T Consensus 1103 ~ 1103 (1238)
T KOG1127|consen 1103 S 1103 (1238)
T ss_pred H
Confidence 4
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=3.4e-10 Score=109.49 Aligned_cols=201 Identities=13% Similarity=0.129 Sum_probs=151.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004744 519 DIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIK 598 (732)
Q Consensus 519 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 598 (732)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34556667777777888888888888777653 3356677777788888888888888888887764 455667777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004744 599 GYCRSGDASKADEFLSKMVSEGV-DPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMH 677 (732)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 677 (732)
.+...|++++|.+.++++..... ......+..+...+...|++++|...+++..+.. +.+...+..++..+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 88888888888888888876422 2234566677888888999999999999988742 224567788888888999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 678 DSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 678 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
+|...++++.+. .+.+...+..++..+...|+.++|..+.+.+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999998874 223557777788888889999999988887764
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=5.8e-11 Score=109.90 Aligned_cols=235 Identities=9% Similarity=0.055 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004744 486 YTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGY 565 (732)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 565 (732)
.--+.+..+|.+.|.+.+|...++..++. .|-+.||..|-..|.+..+++.|+.++.+-++. ++-|+.....+...+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33466788889999999999998888776 456778888888999999999999999888876 344555556677788
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004744 566 CSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAF 645 (732)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 645 (732)
-..++.++|.++|+...+.. +.++....++...|.-.++.+-|..+|++++..|+. +...|+.+.-+|...+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 88899999999999988874 667777777888888889999999999999998865 7778888888888899999999
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 646 ALVSKMENQGLVPD--VITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 646 ~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 722 (732)
.-|+++...--.|+ ..+|..+.......|++.-|.+.|+-++. -+|+ .+.++.|.-.-.+.|+.++|..+++...
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 99998887433444 35788888888888999999999998887 4454 5889999888889999999999998876
Q ss_pred HCCCCCC
Q 004744 723 QRGFVPD 729 (732)
Q Consensus 723 ~~g~~pd 729 (732)
.+.|+
T Consensus 457 --s~~P~ 461 (478)
T KOG1129|consen 457 --SVMPD 461 (478)
T ss_pred --hhCcc
Confidence 44454
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=2.5e-10 Score=110.35 Aligned_cols=199 Identities=13% Similarity=0.068 Sum_probs=126.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA 249 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (732)
...+..++..|...|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 556777778888888888888888887776544 56677777777777788888888887777654 4455566666777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004744 250 LCKDHKIDSAKMFLCEMEQKGVYP-DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDR 328 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 328 (732)
+...|++++|.+.+++.......+ ....+..+...+.+.|++++|.+.+++....... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776542111 2334555666666667777777766666654322 34455566666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHH
Q 004744 329 AKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMS 372 (732)
Q Consensus 329 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (732)
|...+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666554 13334444445555555566666655555443
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.5e-08 Score=101.92 Aligned_cols=459 Identities=15% Similarity=0.117 Sum_probs=225.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH--HHHH--HH
Q 004744 212 LGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTL--INAY--CR 287 (732)
Q Consensus 212 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l--i~~~--~~ 287 (732)
+..+.+.|++++|.+....++..+ +.+...+..=+-++++.+++++|+.+.+.-... .+++.. =.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~------~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL------LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh------hhcchhhHHHHHHHHH
Confidence 445556667777777777776654 556666666666677777777777544332211 111111 2233 35
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHh--HHHHHHHHHcCCCHhHHH
Q 004744 288 EGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTAT--YNTLLVESCRKENMSEAE 365 (732)
Q Consensus 288 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~ 365 (732)
.+..++|+..++-.... +..+...-...+.+.|++++|..+|+.+.+.+. +|... -..++.. +....+.
T Consensus 92 lnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~----~a~l~~~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAV----AAALQVQ 162 (652)
T ss_pred cccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHH----HHhhhHH
Confidence 66777777776622211 233444445566677777777777777765542 22111 1111110 0000110
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004744 366 EIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKG 445 (732)
Q Consensus 366 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 445 (732)
+.+..... ...+-..+......+...|++.+|+++++...+.+.. .++ .++.. . + +
T Consensus 163 -~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~-~~d~~--e---E-----e 218 (652)
T KOG2376|consen 163 -LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLE-DEDTN--E---E-----E 218 (652)
T ss_pred -HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhc-ccccc--h---h-----h
Confidence 11111111 0111222223344455666666666666665322100 000 00000 0 0 0
Q ss_pred CCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCH-H-HHHHHHHHHHHC----
Q 004744 446 CVMDV-VTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFY----TFTTLIHGHCKDGNM-N-KALNLFDIMTQK---- 514 (732)
Q Consensus 446 ~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~-~-~A~~~~~~~~~~---- 514 (732)
+..+. ..--.+...+...|+.++|..++...++.... |.. .-|.|+..- ...++ + .++..++.....
T Consensus 219 ie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~-~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 219 IEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALS-KDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhc-cccccCchHHHHHHHHHHHHhHHH
Confidence 00000 01122334455566666666666666655432 321 122222211 11111 1 111122111110
Q ss_pred -------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCC
Q 004744 515 -------SIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYC-SMGHVTEAFRLWYEMVGKGI 586 (732)
Q Consensus 515 -------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~ 586 (732)
...-....-+.++..|. +..+.+.++...... ..|....-+.+..++. +...+.+|.+++...-+...
T Consensus 297 ~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p 372 (652)
T KOG2376|consen 297 LLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC
Confidence 00001111123333332 344555554443332 2333333333333332 22357788888887766532
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC
Q 004744 587 KPTLVSCNTIIKGYCRSGDASKADEFLS--------KMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQ--GL 656 (732)
Q Consensus 587 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~ 656 (732)
.....+.-.++......|+++.|.+++. .+.+.+..|. +-..+...+.+.++-+-|..++.+++.. .-
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~ 450 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQ 450 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 2224555566677788999999999999 5555444444 4456777788888877787777777651 01
Q ss_pred CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 657 VPDV----ITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAFRFHDEM 721 (732)
Q Consensus 657 ~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 721 (732)
.+.. .++..++..-.+.|+-++|...++++.+ ..| |......++.+|++. +.+.|..+-+.+
T Consensus 451 ~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 451 QTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred cccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 1222 2333334444577999999999999999 555 678888999888875 456666554443
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=4.4e-11 Score=110.64 Aligned_cols=233 Identities=12% Similarity=0.018 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004744 171 LIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNAL 250 (732)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (732)
.--.-++++|.+.|.+.+|...|+..++. .|-+.+|-.|-++|.+..+.+.|+.+|.+.+.. +|-|+....-+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33457889999999999999999998887 456778888899999999999999999998875 355666666677888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 004744 251 CKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAK 330 (732)
Q Consensus 251 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 330 (732)
-..++.++|.+++++..+.... ++.+...+..+|.-.++.|-|+..++++.+-|+. +...|+.+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 8899999999999999887432 6777777888888999999999999999999987 8889999999999999999999
Q ss_pred HHHHHHHHCCCCCCH--HhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004744 331 EVLDEMLQMGLSPDT--ATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKS 408 (732)
Q Consensus 331 ~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~ 408 (732)
..|.+.+..--.|+. .+|..+.......|++..|.+.|+-....+.. +...+|.|.-.-.+.|++++|..++.....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999998865444543 36767777777889999999999888776533 677888888888889999999998888765
Q ss_pred C
Q 004744 409 A 409 (732)
Q Consensus 409 ~ 409 (732)
.
T Consensus 458 ~ 458 (478)
T KOG1129|consen 458 V 458 (478)
T ss_pred h
Confidence 4
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.4e-08 Score=94.88 Aligned_cols=307 Identities=13% Similarity=0.013 Sum_probs=221.8
Q ss_pred CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004744 412 VPDNVLYTIIINGY--CRNGFVLEALKMRDEMLEK-GCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTF 488 (732)
Q Consensus 412 ~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 488 (732)
+|...+....+.++ +-.++-..|...+--+... -++-|+.....+...+...|+.++|+..|++....++. +....
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~M 269 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAM 269 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhH
Confidence 33333333334433 3345545555444433332 34557888899999999999999999999998765321 22222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004744 489 TTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSM 568 (732)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 568 (732)
-...-.+.+.|+.+....+...+.... +-....|-.-........+++.|+.+-++.++.... +...+-.-...+.+.
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 233344567889888888877776542 113333333344556678899999999998876432 555666666778899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHH
Q 004744 569 GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLI-NGFVR-EENMDKAFA 646 (732)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~ 646 (732)
|++++|.-.|+..+... |.+...|..++..|...|.+.+|.-.-+...+. +..+..++..+. ..+.. ..--++|.+
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 99999999999998763 678899999999999999999998887776653 334555555553 33332 233588999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004744 647 LVSKMENQGLVPDV-ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQRG 725 (732)
Q Consensus 647 ~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 725 (732)
++++..+ +.|+. ...+.+...|...|+.++++.++++.+. ..||....+.|++.+...+.+.+|.+.|...+ .
T Consensus 426 f~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL--r 499 (564)
T KOG1174|consen 426 FAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL--R 499 (564)
T ss_pred HHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH--h
Confidence 9999888 67875 3667788888999999999999999998 89999999999999999999999999998887 3
Q ss_pred CCCC
Q 004744 726 FVPD 729 (732)
Q Consensus 726 ~~pd 729 (732)
+.|.
T Consensus 500 ~dP~ 503 (564)
T KOG1174|consen 500 QDPK 503 (564)
T ss_pred cCcc
Confidence 4443
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=3.3e-08 Score=103.60 Aligned_cols=128 Identities=20% Similarity=0.167 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004744 419 TIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKD 498 (732)
Q Consensus 419 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 498 (732)
..+...|...|++++|++..++.++..+. .+..|..-...+-+.|++.+|.+..+.....+.. |...-+..+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHC
Confidence 44455555666666666666666655433 3455555555666666666666666666655443 555555555555666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 499 GNMNKALNLFDIMTQKSIKPDI--------VTYNTLIDGFCKVGEMEKANKLWADMIS 548 (732)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 548 (732)
|++++|..++....+.+..|.. ........+|.+.|++..|++.|..+.+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666666655554322211 1112334556666666666655554443
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=8.6e-08 Score=100.52 Aligned_cols=293 Identities=16% Similarity=0.127 Sum_probs=187.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCcc
Q 004744 124 MIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICF 203 (732)
Q Consensus 124 l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 203 (732)
...++...|.+++|+..+.+... .......+....+..|.+.|+.++|..+|+.++++++.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~------------------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd- 70 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK------------------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD- 70 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh------------------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-
Confidence 34566888999999998876532 12233566777888999999999999999999999876
Q ss_pred CHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHH
Q 004744 204 SINACNSLLGGLVKIG-----WVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKI-DSAKMFLCEMEQKGVYPDTVT 277 (732)
Q Consensus 204 ~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~ 277 (732)
|..-|..+..++.-.. ..+...++|+++...- |.......+.-.+.....+ ..+...+..+..+|++ .+
T Consensus 71 n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---sl 145 (517)
T PF12569_consen 71 NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SL 145 (517)
T ss_pred cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hH
Confidence 7777777777763332 5677788888776542 3222222222112222223 2455667777777754 24
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhC----C----------CCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004744 278 YNTLINAYCREGFLEEAFQLMNSMSGK----G----------LKPGV--FTYNSLINGLCKKGRCDRAKEVLDEMLQMGL 341 (732)
Q Consensus 278 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 341 (732)
++.|-..|......+-..+++...... + -.|.. .++..+...|-..|++++|++.+++.++.
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-- 223 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-- 223 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Confidence 566666666554544455555554321 1 12233 34455566677888888888888888776
Q ss_pred CCC-HHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH----
Q 004744 342 SPD-TATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNV---- 416 (732)
Q Consensus 342 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~---- 416 (732)
.|+ +..|..-...+-+.|++.+|.+.++.....+.. |...=+..+..+.+.|++++|.+++....+.+..|...
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 344 456777777788888888888888888776544 66666677777788888888888887776655422221
Q ss_pred --HH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 417 --LY--TIIINGYCRNGFVLEALKMRDEMLE 443 (732)
Q Consensus 417 --~~--~~li~~~~~~g~~~~A~~~~~~~~~ 443 (732)
.| .....+|.+.|++..|++.|..+.+
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 3345667777777777766655544
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=8.3e-10 Score=113.86 Aligned_cols=236 Identities=17% Similarity=0.179 Sum_probs=161.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC--
Q 004744 487 TFTTLIHGHCKDGNMNKALNLFDIMTQK-----SI-KPDIVT-YNTLIDGFCKVGEMEKANKLWADMISR-----KIS-- 552 (732)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-- 552 (732)
+...+...|...|+++.|..+++..++. |. .|...+ .+.+...|...+++++|..+|+++... |..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4445666667777777777766665543 11 122222 233566777788888888888777642 111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCC
Q 004744 553 PNYISYGILINGYCSMGHVTEAFRLWYEMVGK-----G-IKPTL-VSCNTIIKGYCRSGDASKADEFLSKMVSE---GVD 622 (732)
Q Consensus 553 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 622 (732)
.-..+++.|...|.+.|++++|...++...+. | ..|.+ ..++.++..++..+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 11235666677788888888877777765432 1 12222 23556677788889999999988877653 122
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 004744 623 PD----SISYNTLINGFVREENMDKAFALVSKMENQ-----G-LVPD-VITYNVILTGFCRQGRMHDSELILWRMIE--- 688 (732)
Q Consensus 623 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 688 (732)
++ ..+++.|...|.+.|++++|.+++++++.. | ..+. ...++.|...|.+.++.++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 357889999999999999999999998762 1 1222 34678889999999999999999988654
Q ss_pred -cCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 689 -KGL-NPDR-STYTTLINGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 689 -~g~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 722 (732)
.|. .|+. .+|..|+..|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 2343 789999999999999999999988876
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.33 E-value=4.2e-08 Score=100.58 Aligned_cols=131 Identities=16% Similarity=0.152 Sum_probs=68.4
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 004744 254 HKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVL 333 (732)
Q Consensus 254 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 333 (732)
.++.+|+.+|-+-- + -...|.+|....+|++|+.+-+.. |.+.-...-.+.++++...|+-++|-++-
T Consensus 545 kkfk~ae~ifleqn------~---te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk 612 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN------A---TEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELK 612 (1636)
T ss_pred hhhhHHHHHHHhcc------c---HHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence 45667776664321 1 123466777777888887765532 22222223344555666667766665432
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004744 334 DEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMK 407 (732)
Q Consensus 334 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~ 407 (732)
.. +..+ .+.|..|.+.|.+-.|.+....-.. +..|......+..++.+..-+++|-++|+++.
T Consensus 613 ----~s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~ 675 (1636)
T KOG3616|consen 613 ----ES----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIH 675 (1636)
T ss_pred ----cc----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh
Confidence 11 1111 2356777788877776654321111 11245555555555555555666666665543
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=3.5e-09 Score=105.14 Aligned_cols=224 Identities=13% Similarity=-0.042 Sum_probs=146.8
Q ss_pred HhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHH
Q 004744 129 VRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINAC 208 (732)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 208 (732)
...+..+.++.-+.+++.+.... .+..+..|..++..|.+.|+.++|+..|+++++..+. +...|
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~--------------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~ 101 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLT--------------DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAY 101 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCC--------------cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHH
Confidence 33455666777777776432111 1123566888888899999999999999999888766 78889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004744 209 NSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCRE 288 (732)
Q Consensus 209 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 288 (732)
+.+...+...|++++|.+.|+++++.. |.+..++..+..++...|++++|.+.|++..+.. |+..........+...
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~ 178 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESK 178 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHcc
Confidence 999999999999999999999988764 5566778888888888899999999998888774 3332222222223456
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC---C---CCCHHhHHHHHHHHHcCCCHh
Q 004744 289 GFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMG---L---SPDTATYNTLLVESCRKENMS 362 (732)
Q Consensus 289 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g---~---~~~~~~~~~li~~~~~~g~~~ 362 (732)
++.++|.+.|++..... .|+. |. ........|+..++ +.+..+.+.. . +....+|..+...+.+.|+++
T Consensus 179 ~~~~~A~~~l~~~~~~~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~ 253 (296)
T PRK11189 179 LDPKQAKENLKQRYEKL-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLD 253 (296)
T ss_pred CCHHHHHHHHHHHHhhC-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 78888888887655432 2222 22 12233345665554 3444444210 0 112235666677777777777
Q ss_pred HHHHHHHHHHhCC
Q 004744 363 EAEEIFCEMSRRG 375 (732)
Q Consensus 363 ~A~~~~~~~~~~g 375 (732)
+|...|++..+.+
T Consensus 254 ~A~~~~~~Al~~~ 266 (296)
T PRK11189 254 EAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHhC
Confidence 7777777776654
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=2e-09 Score=111.15 Aligned_cols=236 Identities=19% Similarity=0.199 Sum_probs=161.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-C
Q 004744 452 TYNTILNGLCRAKMLTEADDLFNEMLER-----G-VFPDFYT-FTTLIHGHCKDGNMNKALNLFDIMTQK-----SIK-P 518 (732)
Q Consensus 452 ~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-~ 518 (732)
+...+...|...|+++.|+.+++..++. | ..|...+ .+.+...|...+++++|..+|+++... |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444566666666666666666665543 1 1122222 234666777788888888888777642 111 1
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC
Q 004744 519 -DIVTYNTLIDGFCKVGEMEKANKLWADMISR-----KI-SPNYI-SYGILINGYCSMGHVTEAFRLWYEMVGK---GIK 587 (732)
Q Consensus 519 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~ 587 (732)
-..+++.|...|.+.|++++|...+++..+- +. .|.+. .++.++..++..+++++|..++....+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2245566667788888888877777665532 11 12222 3566777888899999999888876543 112
Q ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 004744 588 PT----LVSCNTIIKGYCRSGDASKADEFLSKMVSE-----G-VDP-DSISYNTLINGFVREENMDKAFALVSKMEN--- 653 (732)
Q Consensus 588 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 653 (732)
++ ..+++.+...|.+.|++++|.+++++++.. | ..+ ....++.|...|.+.+++++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 357889999999999999999999998753 1 112 245678889999999999999999988655
Q ss_pred -CCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 654 -QGL-VPDV-ITYNVILTGFCRQGRMHDSELILWRMI 687 (732)
Q Consensus 654 -~g~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 687 (732)
.|. .|+. .+|..|+..|...|++++|+++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 2343 589999999999999999999988876
No 86
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.1e-11 Score=84.15 Aligned_cols=49 Identities=59% Similarity=1.123 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 004744 273 PDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLC 321 (732)
Q Consensus 273 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 321 (732)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4556666666666666666666666666666666666666666666554
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1e-06 Score=91.95 Aligned_cols=448 Identities=15% Similarity=0.153 Sum_probs=235.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004744 173 FDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCK 252 (732)
Q Consensus 173 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (732)
|+.|=+.|..+|++++|+++-+.=-+.. -..+|.....-+-..++.+.|++.|+.. |. +--..+..|.
T Consensus 829 ~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~---~~-hafev~rmL~----- 896 (1416)
T KOG3617|consen 829 YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKA---GV-HAFEVFRMLK----- 896 (1416)
T ss_pred HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhc---CC-hHHHHHHHHH-----
Confidence 5566677889999999999876432221 2357777788888889999999999854 21 1111221111
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 004744 253 DHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEV 332 (732)
Q Consensus 253 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 332 (732)
.++..-+...+++. |...|.--..-+-..|+++.|+.++..... |-++++..|-.|+.++|-++
T Consensus 897 -e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 897 -EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARI 960 (1416)
T ss_pred -hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHH
Confidence 12222233333332 344444444445557888888888876543 56677777788888888877
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHH-------------Hh--CCCHH
Q 004744 333 LDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIF-------------SR--NGQLD 397 (732)
Q Consensus 333 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~-------------~~--~g~~~ 397 (732)
-++ .-|..+...|.+.|-..|++.+|...|.+... +...|+.+ .- ..+.-
T Consensus 961 A~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v 1025 (1416)
T KOG3617|consen 961 AEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLV 1025 (1416)
T ss_pred HHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHH
Confidence 665 23566666678888888888888887766532 11122211 11 11222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------HHHC--CCCcCHHHHHHHHHHHHhcCCHH
Q 004744 398 RALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDE--------MLEK--GCVMDVVTYNTILNGLCRAKMLT 467 (732)
Q Consensus 398 ~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~--~~~~~~~~~~~li~~~~~~~~~~ 467 (732)
.|-++|++.- . -....+..|-+.|.+.+|+++--+ ++.. ....|+...+.-.+.++...+++
T Consensus 1026 ~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qye 1097 (1416)
T KOG3617|consen 1026 SAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYE 1097 (1416)
T ss_pred HHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHH
Confidence 3334443321 0 011233456666666666654221 1111 22345555666666666666666
Q ss_pred HHHHHHHHHHHc----------C----------------CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004744 468 EADDLFNEMLER----------G----------------VFPDF----YTFTTLIHGHCKDGNMNKALNLFDIMTQKSIK 517 (732)
Q Consensus 468 ~A~~~~~~~~~~----------~----------------~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 517 (732)
+|..++....+. | -.|+. .....+...|.++|.+..|-+-|.+.-.+
T Consensus 1098 kAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK--- 1174 (1416)
T KOG3617|consen 1098 KAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK--- 1174 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---
Confidence 666655443321 1 11222 23444556666777777666666544321
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHH---------H----HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004744 518 PDIVTYNTLIDGFCKVGEMEKANK---------L----WADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGK 584 (732)
Q Consensus 518 ~~~~~~~~li~~~~~~g~~~~A~~---------~----~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 584 (732)
-..+.++.|.|+.++..- + -+-+...+...++.+..-++..|.+..-++.--..|+.....
T Consensus 1175 ------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi 1248 (1416)
T KOG3617|consen 1175 ------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI 1248 (1416)
T ss_pred ------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh
Confidence 123445555665543110 0 011112233445555555555554433333332232222111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHH
Q 004744 585 GIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVR-----------EENMDKAFALVSKMEN 653 (732)
Q Consensus 585 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-----------~g~~~~A~~~~~~~~~ 653 (732)
...-|..+-+ ..|-.++|-+.+.++..++ .....++.|-.-..+ ..+..+.+.-...|.+
T Consensus 1249 ----Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lle 1319 (1416)
T KOG3617|consen 1249 ----EIEELQTYDK---AMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLE 1319 (1416)
T ss_pred ----hHHHHhhhhH---HhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 1111111111 1244566666666665432 122223333222211 1244444555555555
Q ss_pred CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004744 654 QGLVPD----VITYNVILTGFCRQGRMHDSELILWRMIEK 689 (732)
Q Consensus 654 ~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 689 (732)
....|| ...|..|+..+....++..|.+.+++|..+
T Consensus 1320 ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1320 EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 433333 357888999999999999999999999984
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=8.4e-08 Score=95.80 Aligned_cols=235 Identities=13% Similarity=0.131 Sum_probs=156.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------
Q 004744 453 YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNT------- 525 (732)
Q Consensus 453 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------- 525 (732)
...+.+...+..+++.|++.+....+.. -+..-++....+|...|.+.+.........+.|.. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4556777778888888888888888775 36666777788888888888887777776665433 2222322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcC
Q 004744 526 LIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTL-VSCNTIIKGYCRSG 604 (732)
Q Consensus 526 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 604 (732)
+..+|.+.++++.|+..|.+.+.....|+.. .+....+++....+...-. .|.. .-.-.-...+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhcc
Confidence 3335666778888888888877654433322 2233445555554444332 2222 11122245677888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 004744 605 DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDV-ITYNVILTGFCRQGRMHDSELIL 683 (732)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 683 (732)
++..|+..|.++++.. +-|...|....-+|.+.|.+..|+.-.+..++ +.|+. ..|..-+.++....++++|...|
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998888865 44677888888888888888888888888887 45543 46666666777777888888888
Q ss_pred HHHHHcCCCCCH-HHHHHHHHHHH
Q 004744 684 WRMIEKGLNPDR-STYTTLINGHV 706 (732)
Q Consensus 684 ~~~~~~g~~p~~-~~~~~l~~~~~ 706 (732)
++.++ ..|+. .....+.++..
T Consensus 450 ~eale--~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 450 QEALE--LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHh--cCchhHHHHHHHHHHHH
Confidence 88888 66754 33344444443
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.20 E-value=1.9e-08 Score=99.91 Aligned_cols=219 Identities=12% Similarity=-0.037 Sum_probs=151.3
Q ss_pred cCChHHHHHHHHHHHHCCC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 004744 183 ARKLREGSEVFRLLRNKGI---CFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSA 259 (732)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (732)
.+..+.++..+.+++.... .-....|..+...+.+.|+.++|...|.++++.. |.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 4567788888888886432 2224568888888999999999999999998875 66788899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004744 260 KMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQM 339 (732)
Q Consensus 260 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 339 (732)
...|++..+..+. +..+|..+...+...|++++|.+.|+.....+. +..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999887433 567788888888899999999999999887643 3221222222334567889999999775543
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhC---CC--C-CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 004744 340 GLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRR---GV--A-PDIVSFSTLIGIFSRNGQLDRALMYFREMKSAG 410 (732)
Q Consensus 340 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~--~-~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~ 410 (732)
. .++...+ . ......|+.+.+ +.+..+.+. .+ . .....|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 3332222 2 222335555444 344444321 11 0 123567788888888888888888888887764
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=9.1e-08 Score=87.98 Aligned_cols=290 Identities=15% Similarity=0.118 Sum_probs=183.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHH
Q 004744 173 FDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNI-MVNALC 251 (732)
Q Consensus 173 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 251 (732)
+++.+..+.+..++.+|++++..-.++.++ +....+.|...|....++..|...|+++... .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 566677778888999999999988888655 7777888888888999999999999988764 344444432 356777
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 004744 252 KDHKIDSAKMFLCEMEQKGVYPDTVTYNTLI--NAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRA 329 (732)
Q Consensus 252 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 329 (732)
+.+.+.+|..+...|... |+...-..-+ ......+++..+..+.+.....| +..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 889999999998887753 2222111111 22345788888888888876532 555666666667789999999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCC-------------CH---------------h
Q 004744 330 KEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAP-------------DI---------------V 381 (732)
Q Consensus 330 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-------------~~---------------~ 381 (732)
.+-|+...+.+--.....|+..+ +..+.|+.+.|++...+++++|+.. |+ .
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 99999988765444556677544 4556788999999999998877541 11 1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 004744 382 SFSTLIGIFSRNGQLDRALMYFREMKSA-GLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGL 460 (732)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~l~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 460 (732)
.+|.-...+.+.|+++.|.+.+.+|.-+ ....|++|...+.-. -..+++.+..+-+.-++...+- ...|+..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 1222333345566666666666555322 123344444333211 1123344444444444444332 344555555556
Q ss_pred HhcCCHHHHHHHHH
Q 004744 461 CRAKMLTEADDLFN 474 (732)
Q Consensus 461 ~~~~~~~~A~~~~~ 474 (732)
|++.-++-|-.++.
T Consensus 321 CKNeyf~lAADvLA 334 (459)
T KOG4340|consen 321 CKNEYFDLAADVLA 334 (459)
T ss_pred hhhHHHhHHHHHHh
Confidence 66666665555544
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=2.7e-08 Score=88.49 Aligned_cols=198 Identities=16% Similarity=0.047 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004744 172 IFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALC 251 (732)
Q Consensus 172 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (732)
+..-|.-.|.++|+...|..-++++++..+. +..+|..+...|.+.|..+.|.+.|+.+++.. +.+-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 3455677788888888888888888888766 67788888888888888888888888888765 666677888888888
Q ss_pred hcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 004744 252 KDHKIDSAKMFLCEMEQKGVYP-DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAK 330 (732)
Q Consensus 252 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 330 (732)
..|++++|...|++....-..+ -..+|..++-...+.|+.+.|.+.|++.++.... ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8888888888888877652221 2346777777777888888888888888776433 4566677777777888888888
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHh
Q 004744 331 EVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSR 373 (732)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (732)
..++.....+. ++....-..|..--..|+.+.+-+.=..+.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88877776653 6666666666666667777766665555444
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=1.9e-07 Score=85.97 Aligned_cols=326 Identities=13% Similarity=0.122 Sum_probs=216.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004744 122 SAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGI 201 (732)
Q Consensus 122 ~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 201 (732)
.+.+..+.+-.++.+|++++....++ .+.+......|+.+|....++..|-+.++++...-+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er------------------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P 75 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELER------------------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP 75 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc------------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 44555567788999999988777643 344566788899999999999999999999987643
Q ss_pred ccCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 004744 202 CFSINACNS-LLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMV--NALCKDHKIDSAKMFLCEMEQKGVYPDTVTY 278 (732)
Q Consensus 202 ~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 278 (732)
...-|.. -...+.+.+.+.+|+.+...|... ++...-..-+ ......+++..+..+++.....| +..+.
T Consensus 76 --~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~ 147 (459)
T KOG4340|consen 76 --ELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQ 147 (459)
T ss_pred --HHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchh
Confidence 3333332 346778899999999999877431 2222211112 23445788889999988877432 55666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-------------CCH
Q 004744 279 NTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLS-------------PDT 345 (732)
Q Consensus 279 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-------------~~~ 345 (732)
+.......+.|++++|.+-|+...+-+--....+|+..+ +..+.|+++.|++...+++++|+. ||+
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv 226 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV 226 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch
Confidence 777777889999999999999998764443566777554 455789999999999999888642 221
Q ss_pred H---------------hHHHHHHHHHcCCCHhHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004744 346 A---------------TYNTLLVESCRKENMSEAEEIFCEMSRRG-VAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSA 409 (732)
Q Consensus 346 ~---------------~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 409 (732)
. .+|.-...+.+.|+.+.|.+.+..|.-+. ...|++|...+.-. -..+++.+..+-+.-+...
T Consensus 227 rsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 227 RSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred hcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhc
Confidence 1 12222334567899999999998885432 34466776655432 2345566666666666666
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 410 GLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCV-MDVVTYNTILNGLCRAKMLTEADDLFNEM 476 (732)
Q Consensus 410 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 476 (732)
++ ....|+..++-.||++.-++-|-.++.+-...... .+...|+.+=....-.-..++|.+-++.+
T Consensus 306 nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 306 NP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred CC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44 35678999999999999999998887653322111 13333333322222234556665555443
No 93
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=7e-11 Score=81.54 Aligned_cols=50 Identities=38% Similarity=0.727 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004744 238 LNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCR 287 (732)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 287 (732)
||+.+||.++++|++.|++++|.++|++|.+.|+.||..||+.+|++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 55566666666666666666666666666666666666666666666553
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=3.1e-08 Score=88.13 Aligned_cols=209 Identities=12% Similarity=0.012 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004744 119 MSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRN 198 (732)
Q Consensus 119 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 198 (732)
.+...+.-.|...|++..|..-++++++. .+.+..+|..+...|.+.|..+.|.+.|++++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~------------------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls 97 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH------------------DPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Confidence 34556777889999999999999999853 567789999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004744 199 KGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGI-ELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVT 277 (732)
Q Consensus 199 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 277 (732)
..+. +....|.....+|.+|++++|...|++++..-. ..-..+|..+.-+..+.|+++.|...|++.++.... ...+
T Consensus 98 l~p~-~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~ 175 (250)
T COG3063 98 LAPN-NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPA 175 (250)
T ss_pred cCCC-ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChH
Confidence 8877 889999999999999999999999999987422 223447777888888999999999999999998543 4566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 004744 278 YNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNT 350 (732)
Q Consensus 278 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 350 (732)
.-.+.....+.|++-.|...++.....+. ++..+.-..|+.--..|+.+.+.+.=.++... .|...-|..
T Consensus 176 ~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 176 LLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 77889999999999999999999988876 78888888888888999999888877776654 566655543
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.7e-07 Score=92.33 Aligned_cols=432 Identities=14% Similarity=0.068 Sum_probs=245.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH
Q 004744 126 HFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSI 205 (732)
Q Consensus 126 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (732)
.+....|++++|..+|.+++. ..+.|-+.|..-..+|...|++++|++=-.+-++.++. -.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~------------------l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~ 70 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIM------------------LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WA 70 (539)
T ss_pred HhhcccccHHHHHHHHHHHHc------------------cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hh
Confidence 345678999999999999983 35567788888899999999999999988888888766 67
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004744 206 NACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAY 285 (732)
Q Consensus 206 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 285 (732)
..|+....++.-.|++++|+.-|.+-++.. +.|...++-+..++. .+.+. +... -+...|..+..-=
T Consensus 71 kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~~~---~~p~~~~~l~~~p 137 (539)
T KOG0548|consen 71 KGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQLF---TKPYFHEKLANLP 137 (539)
T ss_pred hHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hhhc---cCcHHHHHhhcCh
Confidence 899999999999999999999999988864 666777777777761 11111 1111 1222232222110
Q ss_pred HHcC-CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH-----HHCC-------CCCCHHhHHHHH
Q 004744 286 CREG-FLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEM-----LQMG-------LSPDTATYNTLL 352 (732)
Q Consensus 286 ~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~g-------~~~~~~~~~~li 352 (732)
...+ ..+.++...-+....+ |+ . +..|....++..|...+... ...| ..|... -.
T Consensus 138 ~t~~~~~~~~~~~~l~~~~~~--p~--~----l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~----~~ 205 (539)
T KOG0548|consen 138 LTNYSLSDPAYVKILEIIQKN--PT--S----LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQ----EH 205 (539)
T ss_pred hhhhhhccHHHHHHHHHhhcC--cH--h----hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccc----cC
Confidence 0000 0111111111111111 10 0 01111111111111111000 0000 011100 00
Q ss_pred HHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004744 353 VESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVL 432 (732)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 432 (732)
...-..++..+-.+ . .--..-...+.+...+..+++.|.+-+....+.. .+..-++....+|...|.+.
T Consensus 206 ~~~~~~~d~~ee~~-----~----k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~ 274 (539)
T KOG0548|consen 206 NGFPIIEDNTEERR-----V----KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYA 274 (539)
T ss_pred CCCCccchhHHHHH-----H----HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHH
Confidence 00000000000000 0 0011224456666667777777777777666653 34444555666677777666
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004744 433 EALKMRDEMLEKGCVMDVVTYNT-------ILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKAL 505 (732)
Q Consensus 433 ~A~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 505 (732)
++...-++..+.|.. ...-|+. +...|.+.++++.|+..|.+.......|+.. .+....++++
T Consensus 275 ~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~ 344 (539)
T KOG0548|consen 275 ECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKAL 344 (539)
T ss_pred HhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHH
Confidence 666666555555433 2222222 3345566677888888888876654443321 2233445555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004744 506 NLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKG 585 (732)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 585 (732)
...+...-.+... ..-...-...+.+.|++..|...|.++++.. +.|...|....-+|.+.|.+.+|+.-.+..++..
T Consensus 345 k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 345 KEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred HHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 5554443332221 1112223556778888888888888888875 4478888888888888888888888888877763
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004744 586 IKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSIS 627 (732)
Q Consensus 586 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 627 (732)
++....|..-..++....++++|.+.|.+.++.. |+..-
T Consensus 423 -p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e 461 (539)
T KOG0548|consen 423 -PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAE 461 (539)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHH
Confidence 4555666666667777788888888888888743 54433
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.15 E-value=6.9e-06 Score=84.83 Aligned_cols=447 Identities=13% Similarity=0.092 Sum_probs=195.7
Q ss_pred cChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHh----cCCChhHHHHhhhhhcCCCCCch
Q 004744 95 DNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRK----SGVSRLEIVDSFVSTYSPCGSNS 170 (732)
Q Consensus 95 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~ 170 (732)
+++..|..|++... ..|+ .-..|-.+...-...|++--|.+.|..+-.- .-..-.++.+.....+.+.+.+.
T Consensus 458 ~df~ra~afles~~-~~~d---a~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~f 533 (1636)
T KOG3616|consen 458 GDFDRATAFLESLE-MGPD---AEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDF 533 (1636)
T ss_pred CchHHHHHHHHhhc-cCcc---HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchH
Confidence 56677777765432 2222 3456777777777778777776666433110 00011222232223334444333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004744 171 LIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNAL 250 (732)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (732)
.-...++... ..++.+|..+|-+-- .-..-+..|....++++++.+-+ ..|.|.-...-.+.++++
T Consensus 534 ykvra~lail--~kkfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~lae---~~~~p~~eklk~sy~q~l 599 (1636)
T KOG3616|consen 534 YKVRAMLAIL--EKKFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIALAE---AKGHPALEKLKRSYLQAL 599 (1636)
T ss_pred HHHHHHHHHH--HhhhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHHHHH---hcCChHHHHHHHHHHHHH
Confidence 3222332222 223444444443210 11122334444445555554433 123333333344445555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 004744 251 CKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAK 330 (732)
Q Consensus 251 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 330 (732)
...|+-++|-++- .. |..+ -+.|..|.+.|..-.|.+....=.. +..|......+..++.+..-+++|-
T Consensus 600 ~dt~qd~ka~elk----~s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkag 668 (1636)
T KOG3616|consen 600 MDTGQDEKAAELK----ES----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAG 668 (1636)
T ss_pred HhcCchhhhhhhc----cc----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhh
Confidence 5555554443321 11 1111 2345566666666555544321111 1124444444444444444444444
Q ss_pred HHHHHHHHC----------------------CCCCCHHhH-HHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 004744 331 EVLDEMLQM----------------------GLSPDTATY-NTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLI 387 (732)
Q Consensus 331 ~~~~~~~~~----------------------g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 387 (732)
.+|+++..- .++..+++. ......+...|+++.|..-|-+.. ..-..+
T Consensus 669 dlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kai 739 (1636)
T KOG3616|consen 669 DLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAI 739 (1636)
T ss_pred hHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHH
Confidence 444443310 011111111 111222333344444443332221 011223
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 004744 388 GIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLT 467 (732)
Q Consensus 388 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 467 (732)
.+.....++.+|+.+++.+.+... -..-|..+.+.|+..|+++.|.++|.+.- .++-.|.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 334445555566666555554321 12234455556666666666666654321 2344455566666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 468 EADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMI 547 (732)
Q Consensus 468 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 547 (732)
+|.++-.+.. |.......|.+-..-+-+.|++.+|.++|-.+. .|+ ..|.+|-+.|..++.+++..+-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 6665544432 233333444444445555666666665554332 123 23455666666666555544322
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004744 548 SRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFL 613 (732)
Q Consensus 548 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (732)
.. .-..|...+..-|-..|+...|..-|-+..+ |.+-+.+|-..+.+++|.++-
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 11 1122334455555666666666665544321 333444555555555555443
No 97
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.15 E-value=1.3e-05 Score=85.36 Aligned_cols=222 Identities=13% Similarity=0.132 Sum_probs=146.6
Q ss_pred cChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHH
Q 004744 95 DNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFD 174 (732)
Q Consensus 95 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 174 (732)
++...|++-...+.+.+|+ .+.+-.--.-.+.|.|+.++|..+++..- ...+.|..+..
T Consensus 23 ~qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~------------------~~~~~D~~tLq 81 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALY------------------GLKGTDDLTLQ 81 (932)
T ss_pred HHHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhc------------------cCCCCchHHHH
Confidence 4566777777788888776 23332222234568999999997765542 12233778899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004744 175 LVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDH 254 (732)
Q Consensus 175 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (732)
.+..+|...|+.++|..+|+++... .|+......+..+|++.+++..-.+.--++-+. ++.+.+.+=+++..+...-
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhc
Confidence 9999999999999999999999876 456778888889999998887766655555443 4556665555555444321
Q ss_pred -C---------hhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHhhCCCCCCHhhHHHHHHHHHh
Q 004744 255 -K---------IDSAKMFLCEMEQKG-VYPDTVTYNTLINAYCREGFLEEAFQLM-NSMSGKGLKPGVFTYNSLINGLCK 322 (732)
Q Consensus 255 -~---------~~~A~~~~~~~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~~~~~li~~~~~ 322 (732)
. ..-|.+.++.+.+.+ ..-+..-...-...+-..|.+++|.+++ ....+.-..-+...-+--+..+..
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1 123556666666654 1112222222233455678899999998 344444333344444566777888
Q ss_pred cCChhHHHHHHHHHHHCC
Q 004744 323 KGRCDRAKEVLDEMLQMG 340 (732)
Q Consensus 323 ~g~~~~A~~~~~~~~~~g 340 (732)
.+++.+-.++-.++...|
T Consensus 239 l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKG 256 (932)
T ss_pred hcChHHHHHHHHHHHHhC
Confidence 899999999988888876
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=3.6e-07 Score=94.58 Aligned_cols=272 Identities=12% Similarity=0.009 Sum_probs=156.0
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004744 118 SMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLR 197 (732)
Q Consensus 118 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 197 (732)
...|..+...+...|+.+++...+.+..+..... .............+...|++++|...+++..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l 70 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR---------------ATERERAHVEALSAWIAGDLPKALALLEQLL 70 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC---------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777777777788888776666665432111 0112223334456677889999999999888
Q ss_pred HCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004744 198 NKGICFSINACNSLLGGLVK----IGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYP 273 (732)
Q Consensus 198 ~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 273 (732)
+..+. +...+.. ...+.. .+....+.+.+... ....+........+...+...|++++|...+++..+....
T Consensus 71 ~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~- 146 (355)
T cd05804 71 DDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD- 146 (355)
T ss_pred HHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-
Confidence 77654 4444442 222222 34455555554431 1122333445556667788888888888888888887533
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-CCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHhH-
Q 004744 274 DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLK-PGV--FTYNSLINGLCKKGRCDRAKEVLDEMLQMGL-SPDTATY- 348 (732)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~- 348 (732)
+...+..+...|...|++++|...+++....... |+. ..|..+...+...|++++|..++++...... .+.....
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~ 226 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLL 226 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHh
Confidence 5667778888888888888888888887764321 222 2455677788888888888888888754321 1111111
Q ss_pred H--HHHHHHHcCCCHhHHHHH--H-HHHHhCCC-CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004744 349 N--TLLVESCRKENMSEAEEI--F-CEMSRRGV-APDIVSFSTLIGIFSRNGQLDRALMYFREMKS 408 (732)
Q Consensus 349 ~--~li~~~~~~g~~~~A~~~--~-~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~ 408 (732)
+ .++..+...|..+.+.+. + ........ ............++...|+.++|..+++.+..
T Consensus 227 ~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 227 DAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 1 222233334433333322 1 11111100 00111122455556667777777777776654
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=5.2e-07 Score=93.38 Aligned_cols=202 Identities=9% Similarity=-0.047 Sum_probs=134.0
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-ccCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGI-CFSIN-ACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNI 245 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (732)
..+..+..+...+...|+.++|...+....+... .++.. ........+...|++++|.+.++++.+.. |.+...+..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH
Confidence 4456677777888888888888888877665433 22322 22233445677899999999999988764 555545442
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 004744 246 MVNALCK----DHKIDSAKMFLCEMEQKGVYPD-TVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGL 320 (732)
Q Consensus 246 l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 320 (732)
...+.. .+..+.+.+.++.... ..|+ ......+...+...|++++|.+.+++..+.... +...+..+...+
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~ 158 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAP--ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVL 158 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCc--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 222222 3445555555544111 2233 334455667788889999999999998887533 566778888888
Q ss_pred HhcCChhHHHHHHHHHHHCCC-CCCH--HhHHHHHHHHHcCCCHhHHHHHHHHHHhC
Q 004744 321 CKKGRCDRAKEVLDEMLQMGL-SPDT--ATYNTLLVESCRKENMSEAEEIFCEMSRR 374 (732)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (732)
...|++++|...+++...... .++. ..|..+...+...|+.++|.+++++....
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 899999999999888876531 1222 24556777888889999998888887543
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.08 E-value=2.8e-06 Score=80.03 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=49.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004744 460 LCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKA 539 (732)
Q Consensus 460 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 539 (732)
+.-.|+...|++....+++..+. |...+..-..+|...|++..|+.-++...+..-. +..+.--+-..+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHH
Confidence 44456666666666666655433 5555555566666666666666655555443222 333444445555666666666
Q ss_pred HHHHHHHHHC
Q 004744 540 NKLWADMISR 549 (732)
Q Consensus 540 ~~~~~~~~~~ 549 (732)
+...++.++.
T Consensus 243 L~~iRECLKl 252 (504)
T KOG0624|consen 243 LKEIRECLKL 252 (504)
T ss_pred HHHHHHHHcc
Confidence 6666665554
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.06 E-value=2.9e-05 Score=77.98 Aligned_cols=151 Identities=11% Similarity=0.163 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 501 MNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISP-NYISYGILINGYCSMGHVTEAFRLWY 579 (732)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 579 (732)
.+.....+++++......-..+|-.+++.-.+..-+..|..+|.++.+.+..+ ++..+++++.-||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44555556655543222223456667777777777888888888888876666 66777888876664 67888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 580 EMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD--SISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 580 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
--+++ +..++.--...++.+.+.++-..|+.+|++.+..++.|| ...|..+++--..-|++..++++-+++..
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 76665 344555556777788888888888888888888755555 46788888888888888888888777765
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.05 E-value=1.1e-05 Score=76.20 Aligned_cols=316 Identities=12% Similarity=0.035 Sum_probs=172.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH-HHHH
Q 004744 274 DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATY-NTLL 352 (732)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li 352 (732)
++.-.--+...+...|++.+|+.-|...++.++. +-.++-.-...|...|+-.-|+.=+.++++. .||-..- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 3334445666777778888888888887765211 2223333345677788888888888887775 5664422 2233
Q ss_pred HHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004744 353 VESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVL 432 (732)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 432 (732)
..+.+.|.+++|..=|+.+++.... .. ....++.+.-..++-.. ....+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s--~~---~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPS--NG---LVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCC--cc---hhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchh
Confidence 4567788888888888888776322 11 11111111111111111 222333445567777
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 433 EALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMT 512 (732)
Q Consensus 433 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 512 (732)
.|+.....+++..+- |...+..-..+|...|++..|+.-++...+.... +..++..+-..+...|+.+.++...++.+
T Consensus 173 ~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 777777777775433 6666667777788888888887777666554333 55566666677777888888888887777
Q ss_pred HCCCCCCHHHHHHH-------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHH
Q 004744 513 QKSIKPDIVTYNTL-------------IDGFCKVGEMEKANKLWADMISRKISPNYISY---GILINGYCSMGHVTEAFR 576 (732)
Q Consensus 513 ~~~~~~~~~~~~~l-------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~ 576 (732)
+. .||....-.. +......++|.++.+..+...+..+....+.+ ..+-.++...|++.+|++
T Consensus 251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 65 3333221111 01122334444444444444443222111111 222233344455555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 577 LWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 618 (732)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (732)
...+.++.. +.|+.++.--..+|.-...++.|+.-|+++.+
T Consensus 329 qC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 329 QCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 555555431 22344444445555555555555555555544
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.04 E-value=3.7e-05 Score=77.28 Aligned_cols=186 Identities=9% Similarity=0.099 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004744 536 MEKANKLWADMISRKISPNYISYGILINGYCSMG---HVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEF 612 (732)
Q Consensus 536 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 612 (732)
-+++..+++..++.-...+..+|..+.+---..- ..+.....+++....-...-..+|..+++.-.+..-++.|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455556655554322223334433332111111 2445555666665542222334566777777777778888888
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004744 613 LSKMVSEGVDP-DSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGL 691 (732)
Q Consensus 613 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 691 (732)
|.++.+.+..+ ++..+++++.-|| .++..-|.++|+--.++ ...++.--...++-+.+.|+-..|..+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 88888876666 6777778877665 56778888888876553 222333335666777788888888888888888766
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 692 NPD--RSTYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 692 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
.|| ..+|..++.-=..-|+...+.++-+++..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 775 37888888887888888888888777653
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=3.6e-06 Score=98.89 Aligned_cols=336 Identities=10% Similarity=0.040 Sum_probs=207.6
Q ss_pred HHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC------CCCH--HHHHHHHHHH
Q 004744 354 ESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGL------VPDN--VLYTIIINGY 425 (732)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~------~~~~--~~~~~li~~~ 425 (732)
.....|+++.+...+..+.......+..........+...|++++|..++....+.-. .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777766552211111222334445556678899999888887654311 1111 1222233455
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHH
Q 004744 426 CRNGFVLEALKMRDEMLEKGCVMDV----VTYNTILNGLCRAKMLTEADDLFNEMLER----GV-FPDFYTFTTLIHGHC 496 (732)
Q Consensus 426 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~ 496 (732)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+.+.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999998887763222222 34456666778899999999998887653 11 111234556667788
Q ss_pred hcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHH
Q 004744 497 KDGNMNKALNLFDIMTQK----SIK--P-DIVTYNTLIDGFCKVGEMEKANKLWADMISRK--ISP--NYISYGILINGY 565 (732)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~ 565 (732)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999988876542 211 1 22334455666777899999999888876531 111 233444566677
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCHH--H-H-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH
Q 004744 566 CSMGHVTEAFRLWYEMVGKG--IKPTLV--S-C-NTIIKGYCRSGDASKADEFLSKMVSEGVDPDS---ISYNTLINGFV 636 (732)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~--~~~~~~--~-~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~ 636 (732)
...|++++|.+.+.+..... ...... . . ...+..+...|+.+.|.+.+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88899999999888875421 111111 1 0 11223445678899999888775542111111 11345667788
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004744 637 REENMDKAFALVSKMENQ----GLVPD-VITYNVILTGFCRQGRMHDSELILWRMIEK 689 (732)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 689 (732)
..|+.++|...++++... |..++ ..+...+..++.+.|+.++|...+.++.+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 899999999999887762 32222 235667777888999999999999999874
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=4.2e-06 Score=98.38 Aligned_cols=371 Identities=13% Similarity=-0.011 Sum_probs=231.8
Q ss_pred HHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 004744 352 LVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFV 431 (732)
Q Consensus 352 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 431 (732)
...+...|++.+|........... .-..............|+++.+..++..+.......+..........+...|++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 344566777776665444332110 001111222334556788888777776652211111222333445556778999
Q ss_pred HHHHHHHHHHHHCCCC------cC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcC
Q 004744 432 LEALKMRDEMLEKGCV------MD--VVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDF----YTFTTLIHGHCKDG 499 (732)
Q Consensus 432 ~~A~~~~~~~~~~~~~------~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 499 (732)
++|...+....+.-.. +. ......+...+...|++++|...+++..+.-...+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 9999998877543111 11 112223345567899999999999998764222222 23455666778899
Q ss_pred CHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHh
Q 004744 500 NMNKALNLFDIMTQK----SI-KPDIVTYNTLIDGFCKVGEMEKANKLWADMISR----KIS--P-NYISYGILINGYCS 567 (732)
Q Consensus 500 ~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~ 567 (732)
++++|...+.+.... +. ......+..+...+...|++++|...+++.... +.. + ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 999999999887643 11 111234455667788899999999998887652 211 1 22334556667778
Q ss_pred cCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHHh
Q 004744 568 MGHVTEAFRLWYEMVGKG--IKP--TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGV-DPDSISY-----NTLINGFVR 637 (732)
Q Consensus 568 ~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-----~~li~~~~~ 637 (732)
.|++++|...+.+..... ..+ ....+..+...+...|+.++|.+.++++..... ......+ ...+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 899999999998876531 112 233455566678889999999999988854211 1111111 112244456
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcC
Q 004744 638 EENMDKAFALVSKMENQGLVPD---VITYNVILTGFCRQGRMHDSELILWRMIEK----GLNPD-RSTYTTLINGHVSQN 709 (732)
Q Consensus 638 ~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g 709 (732)
.|+.+.|...+........... ...+..+..++...|+.++|...++++... |..++ ..++..+..++.+.|
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 8999999999877654211111 112456777788999999999999998752 33332 356778889999999
Q ss_pred CHHHHHHHHHHHHHC
Q 004744 710 NLKEAFRFHDEMLQR 724 (732)
Q Consensus 710 ~~~~A~~~~~~m~~~ 724 (732)
+.++|...+.++++.
T Consensus 746 ~~~~A~~~L~~Al~l 760 (903)
T PRK04841 746 RKSEAQRVLLEALKL 760 (903)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999864
No 106
>PLN02789 farnesyltranstransferase
Probab=98.95 E-value=1e-06 Score=87.34 Aligned_cols=208 Identities=8% Similarity=0.006 Sum_probs=145.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-
Q 004744 179 TYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIG-WVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKI- 256 (732)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~- 256 (732)
.+...++.++|+....++++.++. +..+|+....++.+.| .+++++..++++++.+ +.+..+|+--...+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 345567888999999999888766 6778887777777777 5788999998888765 56666777665556666653
Q ss_pred -hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---CCh----hH
Q 004744 257 -DSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKK---GRC----DR 328 (732)
Q Consensus 257 -~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~----~~ 328 (732)
+++..+++++.+...+ |..+|+.....+.+.|+++++++.++++++.++. |..+|+.....+.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 6778888888887654 7788888888888888899999999998887655 777777776665554 222 35
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHcC----CCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 004744 329 AKEVLDEMLQMGLSPDTATYNTLLVESCRK----ENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSR 392 (732)
Q Consensus 329 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 392 (732)
+.....+++... +-|...|+.+...+... +...+|.+.+.+..+.++. +......|+..|+.
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 566665666553 44566777776666652 3345566666666554322 55566666666654
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=1.6e-07 Score=94.65 Aligned_cols=89 Identities=15% Similarity=0.130 Sum_probs=68.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004744 424 GYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNK 503 (732)
Q Consensus 424 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 503 (732)
-+.+.|++.+|.-.|+..+..++. +...|..|.......++-..|+..+++.++.++. +......|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 345677788888888877777655 7777888888888888888888888888887655 67777778888888888888
Q ss_pred HHHHHHHHHHC
Q 004744 504 ALNLFDIMTQK 514 (732)
Q Consensus 504 A~~~~~~~~~~ 514 (732)
|+..++..+..
T Consensus 372 Al~~L~~Wi~~ 382 (579)
T KOG1125|consen 372 ALKMLDKWIRN 382 (579)
T ss_pred HHHHHHHHHHh
Confidence 88888877654
No 108
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=1.2e-06 Score=86.75 Aligned_cols=212 Identities=12% Similarity=0.015 Sum_probs=165.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCC
Q 004744 123 AMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQAR-KLREGSEVFRLLRNKGI 201 (732)
Q Consensus 123 ~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 201 (732)
.+-.++...++.++|+.+..+++.. .+.+..+|+-....+...| .+++++..++++.+.++
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~l------------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np 103 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRL------------------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP 103 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH------------------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC
Confidence 3334455678889999999999853 4556677887777777778 58999999999999887
Q ss_pred ccCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004744 202 CFSINACNSLLGGLVKIGWV--DLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYN 279 (732)
Q Consensus 202 ~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 279 (732)
. +..+|+.....+.+.|+. +++.++++.+++.+ +.|..+|+-...++.+.|+++++++.++++++.++. |..+|+
T Consensus 104 k-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~ 180 (320)
T PLN02789 104 K-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWN 180 (320)
T ss_pred c-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHH
Confidence 7 777888777777777763 77899999999876 778889999999999999999999999999998765 777888
Q ss_pred HHHHHHHHc---CCH----HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHhH
Q 004744 280 TLINAYCRE---GFL----EEAFQLMNSMSGKGLKPGVFTYNSLINGLCKK----GRCDRAKEVLDEMLQMGLSPDTATY 348 (732)
Q Consensus 280 ~li~~~~~~---g~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~g~~~~~~~~ 348 (732)
.....+.+. |.. +++++...+++...+. |..+|+.+...+... +...+|.+.+.+..+.+ +.+....
T Consensus 181 ~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al 258 (320)
T PLN02789 181 QRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFAL 258 (320)
T ss_pred HHHHHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHH
Confidence 877666554 323 5678888788877544 888999999888873 44567888888877654 4466677
Q ss_pred HHHHHHHHc
Q 004744 349 NTLLVESCR 357 (732)
Q Consensus 349 ~~li~~~~~ 357 (732)
..|++.|+.
T Consensus 259 ~~l~d~~~~ 267 (320)
T PLN02789 259 SDLLDLLCE 267 (320)
T ss_pred HHHHHHHHh
Confidence 888888875
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=6.3e-08 Score=94.58 Aligned_cols=254 Identities=11% Similarity=0.036 Sum_probs=150.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004744 423 NGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMN 502 (732)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 502 (732)
+-+.-.|.+..++.-.+ ........+......+.+++...|+++.++ .++... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence 34455678888776555 223222233444556667777788776544 333332 2555555555554444434555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 503 KALNLFDIMTQKSIKP-DIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEM 581 (732)
Q Consensus 503 ~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (732)
.++.-+++........ +..........+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5655555444333222 2222223334566678888888877542 25666777788888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHH--cC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004744 582 VGKGIKPTLVSCNTIIKGYCR--SG--DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLV 657 (732)
Q Consensus 582 ~~~~~~~~~~~~~~l~~~~~~--~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 657 (732)
.+. ..| .+...++.++.. .| .+++|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ +
T Consensus 158 ~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred Hhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 765 333 333344444432 23 578888888887654 45677788888888888888888888888877642 2
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCC
Q 004744 658 PDVITYNVILTGFCRQGRM-HDSELILWRMIEKGLNPD 694 (732)
Q Consensus 658 p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~ 694 (732)
-++.+...++.+....|+. +.+.+++.++.. ..|+
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~ 268 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPN 268 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTT
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCC
Confidence 2455666677666777776 567777777776 5555
No 110
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=1.6e-07 Score=91.83 Aligned_cols=252 Identities=16% Similarity=0.100 Sum_probs=142.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004744 177 IRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKI 256 (732)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (732)
++-+.-.|.+..++.-.+ ........+.....-+.+++...|+++.+. .++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344556788888876665 333333333445556667788888766543 3332332 55555555555444333444
Q ss_pred hHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 004744 257 DSAKMFLCEMEQKGVYP-DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDE 335 (732)
Q Consensus 257 ~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 335 (732)
+.+..-+++....+..+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45554444433332221 2222233334566678888888877643 2566667777888888888888888888
Q ss_pred HHHCCCCCCHHhHHHHHHH----HHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 004744 336 MLQMGLSPDTATYNTLLVE----SCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGL 411 (732)
Q Consensus 336 ~~~~g~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~ 411 (732)
|.+.+ .|.. ...+..+ +.-.+.+.+|.-+|+++.+. ..+++.+.+.++.++...|++++|.+++.+..+.+.
T Consensus 157 ~~~~~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 87652 3333 2223333 22334677888888887654 445777777777777888888888887777665432
Q ss_pred CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHC
Q 004744 412 VPDNVLYTIIINGYCRNGFV-LEALKMRDEMLEK 444 (732)
Q Consensus 412 ~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~ 444 (732)
. +..+...++......|+. +.+.+.+.++...
T Consensus 233 ~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 N-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred C-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 2 445555666666666665 4555566665543
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=5.3e-07 Score=91.04 Aligned_cols=219 Identities=15% Similarity=0.048 Sum_probs=117.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004744 177 IRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKI 256 (732)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (732)
+.-+.+.|.+.+|.-.|+..++.+|. +..+|-.|...-...++-..|+..+.+.++.. |.|..+.-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34466777777777777777777766 77777777777777777777777777777765 56666777777777777777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHH-----------HHHHcCCHHHHHHHHHHHh-hCCCCCCHhhHHHHHHHHHhcC
Q 004744 257 DSAKMFLCEMEQKGVYPDTVTYNTLIN-----------AYCREGFLEEAFQLMNSMS-GKGLKPGVFTYNSLINGLCKKG 324 (732)
Q Consensus 257 ~~A~~~~~~~~~~g~~p~~~~~~~li~-----------~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g 324 (732)
.+|.+.++..+...++ |..+.. .+.....+....++|-++. ..+..+|...+..|.-.|--.|
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 7777777777654221 111100 0011111222233333332 2222234444445554555555
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhCCCHHHHHHHH
Q 004744 325 RCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPD-IVSFSTLIGIFSRNGQLDRALMYF 403 (732)
Q Consensus 325 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~l~ 403 (732)
.+++|...|+.++... +-|...||-|...+....+.++|+..|.+.++. .|. +.++..|.-.|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 5555555555554432 223344555555555555555555555554443 222 233334444444555555554444
Q ss_pred HH
Q 004744 404 RE 405 (732)
Q Consensus 404 ~~ 405 (732)
-.
T Consensus 522 L~ 523 (579)
T KOG1125|consen 522 LE 523 (579)
T ss_pred HH
Confidence 43
No 112
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.80 E-value=0.00045 Score=74.04 Aligned_cols=226 Identities=12% Similarity=0.031 Sum_probs=145.6
Q ss_pred HhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHH
Q 004744 129 VRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINAC 208 (732)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 208 (732)
...+++..|.....+.+++.+.... ..++.+| ...+.|+.++|..+++.....+.. |..+.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~----------------a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~-D~~tL 80 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALY----------------AKVLKAL--SLFRLGKGDEALKLLEALYGLKGT-DDLTL 80 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHH----------------HHHHHHH--HHHHhcCchhHHHHHhhhccCCCC-chHHH
Confidence 4568888888888888876543211 2222222 356889999999888877666555 88888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004744 209 NSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCRE 288 (732)
Q Consensus 209 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 288 (732)
..+-..|...|..++|..+|+++... -|+......+..+|.+.+++.+-.+.--++-+. +.-+...+=++++.+.+.
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHh
Confidence 99999999999999999999998875 466778888888898888876644443333332 111333333444444432
Q ss_pred C-C---------HHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHH-HHHCCCCCCHHhHHHHHHHHH
Q 004744 289 G-F---------LEEAFQLMNSMSGKG-LKPGVFTYNSLINGLCKKGRCDRAKEVLDE-MLQMGLSPDTATYNTLLVESC 356 (732)
Q Consensus 289 g-~---------~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~g~~~~~~~~~~li~~~~ 356 (732)
- . ..-|.+.++.+.+.+ ..-+..-...-...+-..|++++|.+++.. ..+.-..-+...-+--++.+.
T Consensus 158 ~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk 237 (932)
T KOG2053|consen 158 IFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLK 237 (932)
T ss_pred ccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 1 1 234556666666654 222222233334455677889999988843 333322334444455667778
Q ss_pred cCCCHhHHHHHHHHHHhCCC
Q 004744 357 RKENMSEAEEIFCEMSRRGV 376 (732)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~g~ 376 (732)
..+++.+..++-.++...|.
T Consensus 238 ~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 238 LLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HhcChHHHHHHHHHHHHhCC
Confidence 88888888888888887764
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.79 E-value=6.9e-07 Score=81.65 Aligned_cols=169 Identities=13% Similarity=-0.017 Sum_probs=132.2
Q ss_pred CCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 004744 164 SPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTL 243 (732)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 243 (732)
...+.+..+ ..+-+.|...|+-+++..+........+. |....+..+....+.|++.+|...++++.... ++|..+|
T Consensus 61 ~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~ 137 (257)
T COG5010 61 LRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAW 137 (257)
T ss_pred hcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhh
Confidence 344555556 66777888888888888888886655444 66777778888889999999999999887764 8888889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 004744 244 NIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKK 323 (732)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 323 (732)
+.+.-+|.+.|++++|+.-|.+..+.-.. +....|.+.-.|.-.|+++.|..++......+.. |...-..+.......
T Consensus 138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~ 215 (257)
T COG5010 138 NLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQ 215 (257)
T ss_pred hHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhc
Confidence 98888899999999999888888887332 5566788888888889999999988888776443 666777778888888
Q ss_pred CChhHHHHHHHHHH
Q 004744 324 GRCDRAKEVLDEML 337 (732)
Q Consensus 324 g~~~~A~~~~~~~~ 337 (732)
|++++|..+...-.
T Consensus 216 g~~~~A~~i~~~e~ 229 (257)
T COG5010 216 GDFREAEDIAVQEL 229 (257)
T ss_pred CChHHHHhhccccc
Confidence 88888888776644
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.75 E-value=5.6e-06 Score=91.74 Aligned_cols=224 Identities=12% Similarity=0.077 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCcc---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004744 169 NSLIFDLVIRTYVQARKLREGSEVFRLLRNK-GICF---SINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLN 244 (732)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 244 (732)
+...|-.-+....+.+..++|.+++++++.. ++.- -...|.++++....-|.-+...++|+++.+. ......|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3444555555555555555555555554432 1110 1224455555444445555555555555442 12223344
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhc
Q 004744 245 IMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKP-GVFTYNSLINGLCKK 323 (732)
Q Consensus 245 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 323 (732)
.|...|.+.+++++|-++++.|.++ +.-...+|...+..+.+..+-++|..++.++.+.=.+. ......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 5555555555555555555555543 11234455555555555555555555555554431110 112222233333455
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCH--hHHHHHHHHHHhCCCH
Q 004744 324 GRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDI--VSFSTLIGIFSRNGQL 396 (732)
Q Consensus 324 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~g~~ 396 (732)
|+.++++.+|+..+... +--...|+..|+.-.+.|+.+.++.+|+++...++.|-- ..|..-+..--+.|+-
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 55555555555555432 233445555555555555555555555555555444321 2333444433344443
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.71 E-value=2.6e-06 Score=82.23 Aligned_cols=185 Identities=11% Similarity=-0.037 Sum_probs=121.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---H
Q 004744 518 PDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNY---ISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTL---V 591 (732)
Q Consensus 518 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~ 591 (732)
.....+..+...+...|++++|...|+++...... +. ..+..+...+.+.|++++|+..++++++.. +.+. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 34556667777788888888888888888775322 22 355667778888888888888888888763 2122 2
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004744 592 SCNTIIKGYCRS--------GDASKADEFLSKMVSEGVDPDS-ISYNTLINGFVREENMDKAFALVSKMENQGLVPDVIT 662 (732)
Q Consensus 592 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 662 (732)
++..+..++... |+.++|.+.++++.... |+. ..+..+..... ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~-------~~-------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN-------RL-------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH-------HH-------HHH
Confidence 455555555544 66777888888777642 332 22222111100 000 00 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 663 YNVILTGFCRQGRMHDSELILWRMIEKGL-NP-DRSTYTTLINGHVSQNNLKEAFRFHDEMLQR 724 (732)
Q Consensus 663 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 724 (732)
...+...+.+.|++++|...++++++... .| ....+..++.++.+.|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22566778899999999999999998311 23 2578999999999999999999999988643
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.70 E-value=1e-05 Score=89.72 Aligned_cols=230 Identities=13% Similarity=0.062 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004744 484 DFYTFTTLIHGHCKDGNMNKALNLFDIMTQK-SIK---PDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYG 559 (732)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 559 (732)
....|...|....+.++.+.|.++.++++.. ++. --.-.|.++++.-...|.-+...++|+++.+. ......|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4567888888888888888888888888764 111 01246677777777778778888888888765 22355677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhc
Q 004744 560 ILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVD-PDSISYNTLINGFVRE 638 (732)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 638 (732)
.|...|.+.+++++|.++++.|.++ +......|..++..+.+..+-+.|..++.++++.-.. -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8888888888999999999998877 3467778888888888888888888888888874211 1233444555666788
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCCHHHHHH
Q 004744 639 ENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-R-STYTTLINGHVSQNNLKEAFR 716 (732)
Q Consensus 639 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~ 716 (732)
|+.+.+..+|+..... .+--...|+.+++.=.++|+.+.++.+|++.+..++.|- . ..|...+..=-+.|+-+.+..
T Consensus 1614 GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 8999999999888874 233456888888888889999999999999988878773 2 556666655555566544443
Q ss_pred H
Q 004744 717 F 717 (732)
Q Consensus 717 ~ 717 (732)
.
T Consensus 1693 V 1693 (1710)
T KOG1070|consen 1693 V 1693 (1710)
T ss_pred H
Confidence 3
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=2.5e-05 Score=81.40 Aligned_cols=275 Identities=11% Similarity=0.087 Sum_probs=191.7
Q ss_pred CCCChHHHHHHHHHHHhCCCh---HHHHHHHHHHHHhcCCChhHHHHhhhhhcCC-CCCchHHHHHHHHHHHHcCChHHH
Q 004744 114 VKHSSMSLSAMIHFLVRGRRI---SDAQALILRMVRKSGVSRLEIVDSFVSTYSP-CGSNSLIFDLVIRTYVQARKLREG 189 (732)
Q Consensus 114 ~~~~~~~~~~l~~~l~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 189 (732)
.........-+.+.....++- +.+..--+.+...-......+.+.+...|.. .++--..-..+...+...|...+|
T Consensus 338 ~~w~i~~salllr~~~E~~~~RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~laell~slGitksA 417 (777)
T KOG1128|consen 338 KYWSIQASALLLRFLLESTRSRTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLLAELLLSLGITKSA 417 (777)
T ss_pred CceeeehHHHHHHHHHHhcCccchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHHHHHHHHcchHHHH
Confidence 334455556666666555444 4444333333322122222333333333322 234445566778889999999999
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004744 190 SEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 269 (732)
+.+|++.- .|.-++..|...|+...|..+..+-++ -+||...|..++++.....-+++|.++++....+
T Consensus 418 l~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar 486 (777)
T KOG1128|consen 418 LVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR 486 (777)
T ss_pred HHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH
Confidence 99998654 466778888888999999888888777 3788888888888776666677777777664332
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 004744 270 GVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYN 349 (732)
Q Consensus 270 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 349 (732)
+-..+.......++++++.+.|+.-.+.+.- ...+|-.+..+..+.+++..|.+.|....... +.+...||
T Consensus 487 -------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWn 557 (777)
T KOG1128|consen 487 -------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWN 557 (777)
T ss_pred -------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhh
Confidence 2223333344578999999999887765432 56788888888889999999999998887653 33456899
Q ss_pred HHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004744 350 TLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSA 409 (732)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 409 (732)
.+-.+|.+.++-.+|...+.+..+.+ .-+...|-..+-...+.|.+++|.+.+.++.+.
T Consensus 558 Nls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 558 NLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99999999999999999999998877 346677888888888899999999988887653
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=3.5e-08 Score=60.87 Aligned_cols=32 Identities=56% Similarity=1.080 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004744 270 GVYPDTVTYNTLINAYCREGFLEEAFQLMNSM 301 (732)
Q Consensus 270 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 301 (732)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.66 E-value=3.6e-06 Score=81.22 Aligned_cols=187 Identities=9% Similarity=-0.062 Sum_probs=129.2
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCc-c-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---H
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGIC-F-SINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVY---T 242 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~ 242 (732)
..+..+-.++..|.+.|++++|...|+++....+. | ...++..+..++.+.|++++|...|+++++.. |.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 45677888889999999999999999999887543 1 12467888899999999999999999998764 22222 4
Q ss_pred HHHHHHHHHhc--------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 004744 243 LNIMVNALCKD--------HKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYN 314 (732)
Q Consensus 243 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 314 (732)
+..+..++.+. |++++|.+.|+.+.+..+. +...+..+.... ...... .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~----~~~~~~--------------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD----YLRNRL--------------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH----HHHHHH--------------HHHHH
Confidence 55566666654 7788899999998877322 222332222110 000000 01122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhC
Q 004744 315 SLINGLCKKGRCDRAKEVLDEMLQMGL--SPDTATYNTLLVESCRKENMSEAEEIFCEMSRR 374 (732)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (732)
.+...+.+.|++++|...+++..+... +.....+..+...+.+.|+.++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678888888988888888876521 123457778888888899999998888877664
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=1.8e-06 Score=89.54 Aligned_cols=217 Identities=13% Similarity=0.046 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004744 119 MSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRN 198 (732)
Q Consensus 119 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 198 (732)
..-..+..++...|...+|...+++. ..|.-+|-+|...|+..+|..+..+-.+
T Consensus 399 q~q~~laell~slGitksAl~I~Erl--------------------------emw~~vi~CY~~lg~~~kaeei~~q~le 452 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL--------------------------EMWDPVILCYLLLGQHGKAEEINRQELE 452 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH--------------------------HHHHHHHHHHHHhcccchHHHHHHHHhc
Confidence 33446667777777777777777654 5688899999999999999999999888
Q ss_pred CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 004744 199 KGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTY 278 (732)
Q Consensus 199 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 278 (732)
+ +||...|-.+++.....--++.|+++.+..-. .+-..+.....+.++++++.+.|+.-.+... .-..+|
T Consensus 453 k--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~w 522 (777)
T KOG1128|consen 453 K--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTW 522 (777)
T ss_pred C--CCcchhHHHhhhhccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHH
Confidence 4 57899999999988888889999998886532 2333334444567999999999999887743 256789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcC
Q 004744 279 NTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRK 358 (732)
Q Consensus 279 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 358 (732)
-.+..+..+.++++.|.+.|.......+. +...||++-.+|.+.|+..+|...+.+..+.+ .-+...|...+....+.
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDV 600 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhc
Confidence 89999999999999999999999876433 67899999999999999999999999999876 44556677777778899
Q ss_pred CCHhHHHHHHHHHHh
Q 004744 359 ENMSEAEEIFCEMSR 373 (732)
Q Consensus 359 g~~~~A~~~~~~~~~ 373 (732)
|.+++|.+.+.++..
T Consensus 601 ge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLD 615 (777)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999988865
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=7.2e-06 Score=75.14 Aligned_cols=161 Identities=14% Similarity=0.079 Sum_probs=130.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004744 122 SAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGI 201 (732)
Q Consensus 122 ~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 201 (732)
......|.-.|+-++...+..... ...+.+..+....++...++|++.+|+.+|+++....+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~------------------~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p 131 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSA------------------IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP 131 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhh------------------ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC
Confidence 455556666677666666655543 23445667777789999999999999999999988765
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 004744 202 CFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTL 281 (732)
Q Consensus 202 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 281 (732)
. |...|+.+.-+|.+.|++++|..-|.+..+.- +-+....|-+.-.|.-.|+++.|+.++......+.. |..+-..+
T Consensus 132 ~-d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NL 208 (257)
T COG5010 132 T-DWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNL 208 (257)
T ss_pred C-ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHH
Confidence 5 99999999999999999999999999998864 556677888888888899999999999998887544 77777888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh
Q 004744 282 INAYCREGFLEEAFQLMNSMSG 303 (732)
Q Consensus 282 i~~~~~~g~~~~A~~~~~~m~~ 303 (732)
.......|++++|.++...-..
T Consensus 209 Al~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 209 ALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHhhcCChHHHHhhcccccc
Confidence 8889999999999998766543
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=1e-05 Score=74.74 Aligned_cols=156 Identities=12% Similarity=0.136 Sum_probs=109.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004744 176 VIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHK 255 (732)
Q Consensus 176 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (732)
-+..|...|+++......+.+... . ..+...++.+++...++..++.+ +.|...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~--~----------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADP--L----------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCc--c----------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 355688888887765444322211 0 01122566777777888877765 7778888888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCC--HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 004744 256 IDSAKMFLCEMEQKGVYPDTVTYNTLINA-YCREGF--LEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEV 332 (732)
Q Consensus 256 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 332 (732)
+++|...|++..+.... +...+..+..+ +...|+ .++|.+++++..+.+.. +..++..+...+.+.|++++|...
T Consensus 89 ~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887544 66777777775 456676 48888888888877554 677788888888888888888888
Q ss_pred HHHHHHCCCCCCHHh
Q 004744 333 LDEMLQMGLSPDTAT 347 (732)
Q Consensus 333 ~~~~~~~g~~~~~~~ 347 (732)
++++++.. +|+..-
T Consensus 167 ~~~aL~l~-~~~~~r 180 (198)
T PRK10370 167 WQKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHHhhC-CCCccH
Confidence 88887764 444433
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=5.6e-06 Score=90.54 Aligned_cols=163 Identities=12% Similarity=0.048 Sum_probs=136.2
Q ss_pred CCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHH
Q 004744 113 NVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEV 192 (732)
Q Consensus 113 ~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 192 (732)
.|.+++.++-.|..+..+.|++++|..+++.++. -+|.+...+..++..+.+.+++++|+..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------------------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ------------------RFPDSSEAFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------------------hCCCcHHHHHHHHHHHHHhccHHHHHHH
Confidence 3677899999999999999999999999999973 3677788899999999999999999999
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004744 193 FRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVY 272 (732)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 272 (732)
+++.....+. +......+..++.+.|++++|..+|+++...+ +.+..++..+...+.+.|+.++|...|++..+.- .
T Consensus 143 ~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~ 219 (694)
T PRK15179 143 IELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-G 219 (694)
T ss_pred HHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-C
Confidence 9999999877 88889999999999999999999999999843 6678899999999999999999999999998762 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004744 273 PDTVTYNTLINAYCREGFLEEAFQLMNSMS 302 (732)
Q Consensus 273 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 302 (732)
+-+..|+.++. ++..-...++++.
T Consensus 220 ~~~~~~~~~~~------~~~~~~~~~~~~~ 243 (694)
T PRK15179 220 DGARKLTRRLV------DLNADLAALRRLG 243 (694)
T ss_pred cchHHHHHHHH------HHHHHHHHHHHcC
Confidence 34455554432 3333344455543
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.55 E-value=3.5e-05 Score=84.46 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=88.2
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004744 167 GSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIM 246 (732)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 246 (732)
+.++..+-.|.....+.|++++|..+++.+.+..+. +......++.++.+.+++++|+..+++.+... +.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 344666666667777777777777777777666555 55666666667777777777777777766654 5555566666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004744 247 VNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGK 304 (732)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 304 (732)
..++.+.|++++|..+|+++...+.. +..++..+...+-+.|+.++|...|+...+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666777777777777776664322 3556666666666677777777777766554
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=4e-06 Score=77.35 Aligned_cols=126 Identities=9% Similarity=-0.032 Sum_probs=103.5
Q ss_pred cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--hhHH
Q 004744 183 ARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNAL-CKDHK--IDSA 259 (732)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 259 (732)
.++.++++..++..++.++. |...|..+...|...|++++|...|+++.+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56678888888888888776 88899999999999999999999999998875 66788888888764 66677 4899
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhh
Q 004744 260 KMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFT 312 (732)
Q Consensus 260 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 312 (732)
.+++++..+.+.. +..++..+...+.+.|++++|+..++++.+... |+..-
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~-~~~~r 180 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNS-PRVNR 180 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCccH
Confidence 9999999988654 778888888999999999999999999987643 34433
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=0.00014 Score=66.28 Aligned_cols=188 Identities=13% Similarity=0.122 Sum_probs=103.4
Q ss_pred hcCCHHHHHHHHHHHHHc---C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004744 462 RAKMLTEADDLFNEMLER---G-VFPDFYT-FTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEM 536 (732)
Q Consensus 462 ~~~~~~~A~~~~~~~~~~---~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 536 (732)
...+.++..+++.++... | ..++..+ |..++-+....|+.+.|...++.+...- +-+...-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 345566677766666542 2 3334332 3334444555666666666666665542 22222222222223445666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004744 537 EKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKM 616 (732)
Q Consensus 537 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (732)
++|+++++.+++.+ +.|.+++-.-+...-..|+..+|++-+.+..+. +..|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 66666666666654 335555555555555666666666666666655 4566666666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 004744 617 VSEGVDPDSISYNTLINGFVREE---NMDKAFALVSKMEN 653 (732)
Q Consensus 617 ~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~ 653 (732)
+-.. +.+...+..+.+.+.-.| +++-|.++|.+..+
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6532 123344444554444333 34556666666665
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=1.1e-05 Score=70.39 Aligned_cols=91 Identities=8% Similarity=-0.191 Sum_probs=40.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004744 211 LLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGF 290 (732)
Q Consensus 211 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 290 (732)
+...+.+.|++++|...|+.++... +.+..++..+..++.+.|++++|...|++..+.... +...+..+...+.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCC
Confidence 3444444444444444444444432 334444444444444444444444444444443221 33444444444444444
Q ss_pred HHHHHHHHHHHhh
Q 004744 291 LEEAFQLMNSMSG 303 (732)
Q Consensus 291 ~~~A~~~~~~m~~ 303 (732)
+++|...|+....
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 128
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=1.9e-07 Score=57.60 Aligned_cols=32 Identities=47% Similarity=0.771 Sum_probs=19.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 690 GLNPDRSTYTTLINGHVSQNNLKEAFRFHDEM 721 (732)
Q Consensus 690 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 721 (732)
|+.||..+|+.|+++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666555
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=6.7e-06 Score=71.68 Aligned_cols=109 Identities=11% Similarity=-0.117 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA 249 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (732)
+..+..++..+.+.|++++|...|+.+....+. +...|..+..++.+.|++++|...|+++++.+ +.+..++..+..+
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~ 101 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 334556788899999999999999999998876 88999999999999999999999999999875 7888999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 004744 250 LCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTL 281 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 281 (732)
+.+.|++++|...|+...+..+. +...|...
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~ 132 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMSYA-DASWSEIR 132 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 99999999999999999987432 34444333
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.45 E-value=0.00013 Score=80.86 Aligned_cols=173 Identities=12% Similarity=0.046 Sum_probs=111.6
Q ss_pred CCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004744 165 PCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLN 244 (732)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 244 (732)
..+.+...|..|+..|...|++++|.++.+...+..+. ....|-.+...+.+.++.+++..+ .+..
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~----------- 91 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLID----------- 91 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhh-----------
Confidence 35677899999999999999999999999988887554 444455555577777777766665 3322
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 004744 245 IMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKG 324 (732)
Q Consensus 245 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 324 (732)
......++.-..-+...|...+ -+..++..+..+|-+.|+.++|.++++++.+..+. |..+.|.+...|...
T Consensus 92 ----~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 92 ----SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE- 163 (906)
T ss_pred ----hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-
Confidence 2222233322233333444432 13446666777777777777777777777776633 677777777777777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhC
Q 004744 325 RCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRR 374 (732)
Q Consensus 325 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (732)
++++|.+++.+.+.. +....++..+.+++.++...
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 777777777776543 33444555555555555543
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=7.6e-05 Score=82.57 Aligned_cols=238 Identities=11% Similarity=0.083 Sum_probs=150.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004744 204 SINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLIN 283 (732)
Q Consensus 204 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~ 283 (732)
+...|..|+..+...+++++|.++.+...+.. |.....|-.+...+.+.++.+++..+ . ++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 56678888888888888888888888776653 33333444444466666665555544 2 222
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhH
Q 004744 284 AYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSE 363 (732)
Q Consensus 284 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 363 (732)
......++.-+..+...|... .-+..++..+..+|-+.|+.++|..+++++++.. +-|..+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 222333332333333334332 2245577888888999999999999999999886 56778888888888888 8999
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 364 AEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLE 443 (732)
Q Consensus 364 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 443 (732)
|.+++.+.... +...+++.++.+++.++....+. +...+..+. +.+..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~----------------~ki~~ 215 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE----------------RKVLG 215 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------HHHHh
Confidence 99888777653 56666778888888887765222 222222222 22211
Q ss_pred C-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004744 444 K-GCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHC 496 (732)
Q Consensus 444 ~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 496 (732)
. +...-+.++-.+-..|-..+++++++.+++.+++.... |......++..|.
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 1 12223344445555567777777777777777776554 5566666666664
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=0.00035 Score=69.97 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=53.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCChhHH
Q 004744 251 CKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPG-VFTYNSLINGLCKKGRCDRA 329 (732)
Q Consensus 251 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A 329 (732)
...|.+++|++.++.+.+.-+. |+..+......+.+.++.++|.+.++++... .|+ ...+.++..+|.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3344555555555554444211 3333334444555555555555555555443 222 33344444555555555555
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHH
Q 004744 330 KEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCE 370 (732)
Q Consensus 330 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (732)
+.++++..... +-|...|..|..+|...|+..++..-..+
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55555544432 33444555555555555555554444433
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.0012 Score=60.72 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 465 MLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQK 514 (732)
Q Consensus 465 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (732)
++.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++.+.+
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344444444444432 2334444444444444444455554444444444
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00078 Score=62.02 Aligned_cols=236 Identities=15% Similarity=0.121 Sum_probs=111.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 004744 178 RTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKID 257 (732)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (732)
+-|.-.|.+..++..-....... .+...---+-++|...|.+..... ++.. |-.|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhH
Confidence 44455566666655544433221 133333344455666665543322 2211 11233333333333333333333
Q ss_pred HHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004744 258 SAK-MFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEM 336 (732)
Q Consensus 258 ~A~-~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 336 (732)
+-. ++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 233333333222222222223335666777777777666511 2333333334455666666666666666
Q ss_pred HHCCCCCCHHhHHHHHHHHHc----CCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 004744 337 LQMGLSPDTATYNTLLVESCR----KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLV 412 (732)
Q Consensus 337 ~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~ 412 (732)
.+. .+..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+-.+.++...|++++|..++++...+...
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 653 244455544444433 34456666666666553 3455566666666666666666666666666555333
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 004744 413 PDNVLYTIIINGYCRNGF 430 (732)
Q Consensus 413 ~~~~~~~~li~~~~~~g~ 430 (732)
++.+...++..-...|.
T Consensus 240 -dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 240 -DPETLANLIVLALHLGK 256 (299)
T ss_pred -CHHHHHHHHHHHHHhCC
Confidence 34444444443333443
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=5.3e-05 Score=75.66 Aligned_cols=113 Identities=17% Similarity=0.012 Sum_probs=50.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 004744 181 VQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAK 260 (732)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (732)
...|.+++|+..++.++..-+. |+..+......+.+.|+.++|.+.++.++... |......-.+.++|.+.|++.+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHH
Confidence 3444444444444444443332 34444444444444444444444444444431 111333334444444445544444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004744 261 MFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQ 296 (732)
Q Consensus 261 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 296 (732)
..+.+....... |...|..|..+|.+.|+..+|..
T Consensus 395 ~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 395 RILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHH
Confidence 444444444222 44445555555555554444443
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.0003 Score=64.15 Aligned_cols=199 Identities=14% Similarity=0.142 Sum_probs=153.3
Q ss_pred hcCCHHHHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004744 497 KDGNMNKALNLFDIMTQK---S-IKPDIVT-YNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHV 571 (732)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~---~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 571 (732)
...+.++.++++.+++.. | ..++..+ |..++-+..-.|+.+.|...++++...- +-+...-..-...+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 456889999999988753 3 4455543 4445556667899999999999988874 33444333333445678999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 572 TEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKM 651 (732)
Q Consensus 572 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 651 (732)
++|+++++..++.+ |.|.+++..-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999886 777888887777888889988999998888874 5679999999999999999999999999999
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 004744 652 ENQGLVP-DVITYNVILTGFCRQG---RMHDSELILWRMIEKGLNP-DRSTYTTLI 702 (732)
Q Consensus 652 ~~~g~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 702 (732)
+- +.| ++..+..+...+.-.| ++.-|.++|.+.++ +.| +...+..+.
T Consensus 181 ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~~~~ral~GI~ 232 (289)
T KOG3060|consen 181 LL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNPKNLRALFGIY 232 (289)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hChHhHHHHHHHH
Confidence 98 556 5566678888776554 67789999999999 777 445544443
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.28 E-value=4.2e-05 Score=66.31 Aligned_cols=101 Identities=11% Similarity=0.009 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004744 591 VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGF 670 (732)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 670 (732)
.....+...+...|++++|.+.++++...+ +.+...+..+...+.+.|++++|...+++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 444455555666666666666666665543 2245556666666666666666666666666532 22345555566666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 671 CRQGRMHDSELILWRMIEKGLNPDR 695 (732)
Q Consensus 671 ~~~g~~~~A~~~~~~~~~~g~~p~~ 695 (732)
...|++++|...|++..+ ..|+.
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~p~~ 118 (135)
T TIGR02552 96 LALGEPESALKALDLAIE--ICGEN 118 (135)
T ss_pred HHcCCHHHHHHHHHHHHH--hcccc
Confidence 666666666666666666 45544
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.27 E-value=4.2e-05 Score=66.30 Aligned_cols=101 Identities=13% Similarity=-0.048 Sum_probs=74.2
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004744 167 GSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIM 246 (732)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 246 (732)
+.+......++..|.+.|++++|.+.|+.+...++. +...|..+...+.+.|++++|..+++++++.+ +.+..++..+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 91 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA 91 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 344555666777777888888888888887776654 67777777777778888888888888777654 5566666667
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 004744 247 VNALCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~~~~~ 269 (732)
...+...|++++|...|+...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777777776
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=5.7e-05 Score=76.47 Aligned_cols=131 Identities=17% Similarity=0.148 Sum_probs=108.8
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMV 247 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 247 (732)
.+...-..|++.+...++++.|+.+|+++.+.. |+ ....++..+...++..+|.+++.+.++.. +.+...+....
T Consensus 167 ~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa 241 (395)
T PF09295_consen 167 VNNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQA 241 (395)
T ss_pred cchHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345667778888888999999999999999874 33 44557888888899999999999998764 66777888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004744 248 NALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGK 304 (732)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 304 (732)
..+.+.++++.|..+.+++.+..+. +-.+|..|+..|.+.|+++.|+-.++.+...
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8899999999999999999988432 4558999999999999999999999988654
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.17 E-value=7e-05 Score=65.60 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=72.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHH
Q 004744 602 RSGDASKADEFLSKMVSEGVDP--DSISYNTLINGFVREENMDKAFALVSKMENQGLVPD--VITYNVILTGFCRQGRMH 677 (732)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~ 677 (732)
..++...+...++.+.+..... .....-.+...+...|++++|...|+.+......|+ ......|...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3667777777777776643111 122233345666777777777777777777542221 123445666777778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 678 DSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEM 721 (732)
Q Consensus 678 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 721 (732)
+|...++..... ......+...+++|.+.|++++|...|++.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 887777653321 123456667777788888888888777654
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=0.00014 Score=63.69 Aligned_cols=125 Identities=14% Similarity=0.212 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 004744 558 YGILINGYCSMGHVTEAFRLWYEMVGKGIKPT---LVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD--SISYNTLI 632 (732)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li 632 (732)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33333333 3677777777787777763 333 23334455677788888888888888887652232 22344567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 633 NGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRM 686 (732)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 686 (732)
..+...|++++|+..++..... ......+...+.+|.+.|++++|...|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7778888888888888664432 234456677788888888888888888765
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=9.8e-05 Score=74.79 Aligned_cols=120 Identities=16% Similarity=0.140 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004744 595 TIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQG 674 (732)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 674 (732)
.++..+...++++.|+++++++.+.. |+. ...++..+...++-.+|.+++++.++. .+-+...+..-+..|.+.|
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 34444555566666666666666542 332 223555555566666666666666653 1224444444555566666
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 675 RMHDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEM 721 (732)
Q Consensus 675 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 721 (732)
+.+.|..+.+++.+ ..|+ ..+|..|+.+|.+.|++++|+-.++.+
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66666666666666 5664 356666666666666666666666655
No 143
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=0.013 Score=61.18 Aligned_cols=307 Identities=11% Similarity=0.114 Sum_probs=147.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhCCCHHHHHH
Q 004744 323 KGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRR-GVAPDIVSFSTLIGIFSRNGQLDRALM 401 (732)
Q Consensus 323 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (732)
-|++++|.+++-+|-+.+ ..|..+.+.|++-...++++.-... .-..-...|+.+...+.....+++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777776665432 1345566667666655555321110 000113467777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004744 402 YFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGV 481 (732)
Q Consensus 402 l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 481 (732)
.|..-.. ....+.++.+..++++-..+...+. .+....-.+..++...|..++|.+.|-+- +.
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~ 880 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRR---SL 880 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhc---cC
Confidence 7765321 1223445555555554433333332 25555666777777778877777766432 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 482 FPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTY--------------NTLIDGFCKVGEMEKANKLWADMI 547 (732)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~~~ 547 (732)
+ ...+..|....++.+|.++-+...- |.+.+. ..-|..+.+.|+.-+|.+++.+|.
T Consensus 881 p------kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 881 P------KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred c------HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 1 2345556666777777766554321 122211 112334455555555555555554
Q ss_pred HC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004744 548 SR----KISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDP 623 (732)
Q Consensus 548 ~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 623 (732)
+. +.++-..--..++.++. ..++.++++-.+....+|...+... +...|-..++-.+.+..-. | .
T Consensus 951 e~e~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr-g--A 1019 (1189)
T KOG2041|consen 951 EREQEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR-G--A 1019 (1189)
T ss_pred HHHhhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh-h--H
Confidence 32 22211111111111111 1223333333333333433222211 1122333333333332211 1 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCH
Q 004744 624 DSISYNTLINGFVREENMDKAFALVSKMEN-QGLVPDVITYNVILTGFCRQGRM 676 (732)
Q Consensus 624 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~~ 676 (732)
...+|..|..-....|.++.|++.--.+.+ ..+-|...+|..+.-+-|....+
T Consensus 1020 EAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raF 1073 (1189)
T KOG2041|consen 1020 EAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAF 1073 (1189)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhh
Confidence 345555666666677888888765444433 12445556676665554443333
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00092 Score=65.37 Aligned_cols=257 Identities=10% Similarity=0.023 Sum_probs=132.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004744 422 INGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNM 501 (732)
Q Consensus 422 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 501 (732)
...+.+..++.+|+..+...++..+. +...|..-...+..-+++++|.--.+.-.+.... ........-.++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHH
Confidence 34677777888888888888877655 4666666666677777777777666555443221 223445555666666667
Q ss_pred HHHHHHHHHHHH----------------CCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004744 502 NKALNLFDIMTQ----------------KSIKPDIVTYNTL-IDGFCKVGEMEKANKLWADMISRKISPNYISYGILING 564 (732)
Q Consensus 502 ~~A~~~~~~~~~----------------~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 564 (732)
.+|.+.++.-.. ..-+|.-..+..+ ...+.-.|++++|...-..+++.. ....+...+++
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg 210 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRG 210 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcc
Confidence 777666652210 0001222222222 123444566666666655555542 11222223322
Q ss_pred --HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHC---CCCCCHH
Q 004744 565 --YCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTI-------------IKGYCRSGDASKADEFLSKMVSE---GVDPDSI 626 (732)
Q Consensus 565 --~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 626 (732)
+.-.++.+.|...|++.+.. .|+....... ..-..+.|++.+|.+.|.+.+.. ++.|+..
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 22345666666666666654 3333221111 11233456666666666666543 2233344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 004744 627 SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTG--FCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 627 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 688 (732)
.|........+.|+.++|+.--++..+ +.+. .++..+.++ +...++|++|++.++++.+
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~--iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALK--IDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhh--cCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 454455555566666666666665554 2221 222222222 3344566666666666655
No 145
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=6.2e-05 Score=70.52 Aligned_cols=100 Identities=12% Similarity=0.208 Sum_probs=83.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC
Q 004744 597 IKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDV-ITYNVILTGFCRQGR 675 (732)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~ 675 (732)
..-..+.+++++|+..|.++++.. +-|.+.|..-..+|++.|.++.|++-.+..+. +.|.. ..|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 344667889999999999999853 33677788888999999999999999999988 67765 589999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004744 676 MHDSELILWRMIEKGLNPDRSTYTTL 701 (732)
Q Consensus 676 ~~~A~~~~~~~~~~g~~p~~~~~~~l 701 (732)
+++|++.|++.++ +.|+..+|..=
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~n 188 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSN 188 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHH
Confidence 9999999999999 99977665443
No 146
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.98 E-value=0.029 Score=58.79 Aligned_cols=353 Identities=14% Similarity=0.109 Sum_probs=185.9
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC--------HHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCC
Q 004744 307 KPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQM-GLSPD--------TATYNTLLVESCRKENMSEAEEIFCEMSRRGVA 377 (732)
Q Consensus 307 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 377 (732)
.|.+..|..|...-...-.++.|...|-+.... |++.- ...-.+=+.+ --|++++|.+++-+|.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 467778888887777777777777777665432 22100 0000111222 2488888888888776652
Q ss_pred CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 004744 378 PDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD----NVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTY 453 (732)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 453 (732)
..+..+.+.|++-...++++.- |-..| ...++.+...+.....+++|.+.+..-...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 2456677778887777776531 11111 246777888888888888888777654321
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004744 454 NTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKV 533 (732)
Q Consensus 454 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 533 (732)
...+.++.+..++++-..+-+.+.+ |....-.+..++...|.-++|.+.|-+.. .+ .+.+..|...
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~p------kaAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS---LP------KAAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc---Cc------HHHHHHHHHH
Confidence 2345556666666665555444432 55566778888888999888888774422 11 2345667777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHH--------------HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHH
Q 004744 534 GEMEKANKLWADMISRKISPNYISYG--------------ILINGYCSMGHVTEAFRLWYEMVGK----GIKPTLVSCNT 595 (732)
Q Consensus 534 g~~~~A~~~~~~~~~~~~~~~~~~~~--------------~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~ 595 (732)
++|.+|.++-+...- |.+.+.- .-|..+.+.|+.-+|.+++.+|.+. +.++-..--.-
T Consensus 892 nQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklY 967 (1189)
T KOG2041|consen 892 NQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLY 967 (1189)
T ss_pred HHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHH
Confidence 888888776654321 1222211 1233344445555555555555432 22221111111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004744 596 IIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGR 675 (732)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 675 (732)
++.++. ..+..++.+-.++....|...+... +...|-..++-++.+..-. -.....+..|..--...|.
T Consensus 968 VL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr---gAEAyHFmilAQrql~eg~ 1036 (1189)
T KOG2041|consen 968 VLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR---GAEAYHFMILAQRQLFEGR 1036 (1189)
T ss_pred HHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---hHHHHHHHHHHHHHHHhch
Confidence 111111 1122233333333333332222111 1222333333333332221 1123455556555667799
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCH
Q 004744 676 MHDSELILWRMIE-KGLNPDRSTYTTLINGHVSQNNL 711 (732)
Q Consensus 676 ~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~~ 711 (732)
++.|.+.--.+.+ ..+-|-..+|..|.-+-+....+
T Consensus 1037 v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raF 1073 (1189)
T KOG2041|consen 1037 VKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAF 1073 (1189)
T ss_pred HHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhh
Confidence 9999876655554 23556667777766554444333
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.98 E-value=0.00047 Score=59.09 Aligned_cols=93 Identities=4% Similarity=-0.108 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004744 594 NTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQ 673 (732)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 673 (732)
-.+...+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|+..|..+.... +.|+..+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 334444555666666666666555432 1134445555555556666666666666666532 12344555555666666
Q ss_pred CCHHHHHHHHHHHHH
Q 004744 674 GRMHDSELILWRMIE 688 (732)
Q Consensus 674 g~~~~A~~~~~~~~~ 688 (732)
|+.+.|.+.|+..+.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666554
No 148
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.94 E-value=0.027 Score=56.00 Aligned_cols=146 Identities=14% Similarity=0.233 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004744 520 IVTYNTLIDGFCKVGEMEKANKLWADMISRK-ISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIK 598 (732)
Q Consensus 520 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 598 (732)
...|..+++...+..-++.|..+|-+..+.+ ..+++..+++++.-++. |+...|..+|+--... ++.+..-.+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 3456666777777777888888888888777 56777788888876654 6777888888766554 2334444455666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004744 599 GYCRSGDASKADEFLSKMVSEGVDPD--SISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGF 670 (732)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 670 (732)
.+...++-+.|..+|+..++. +..+ ...|..+|+--..-|++..+..+=++|.+ +-|...+.....+-|
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 777788888888888866543 2223 45677788777788888888877777776 455544444444434
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.93 E-value=1.5e-05 Score=49.97 Aligned_cols=33 Identities=45% Similarity=0.898 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 004744 277 TYNTLINAYCREGFLEEAFQLMNSMSGKGLKPG 309 (732)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 309 (732)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555544444
No 150
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.90 E-value=2.1e-05 Score=49.33 Aligned_cols=33 Identities=45% Similarity=0.797 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004744 697 TYTTLINGHVSQNNLKEAFRFHDEMLQRGFVPD 729 (732)
Q Consensus 697 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 729 (732)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 151
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.012 Score=57.84 Aligned_cols=276 Identities=14% Similarity=0.051 Sum_probs=155.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004744 175 LVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDH 254 (732)
Q Consensus 175 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (732)
.....+.+...+.+|+..+..+.+..+. ++..|..-+..+...|++++|.--.+..++.. +.........-+++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhH
Confidence 3455677888889999999999988776 57777777777888888888887776665542 222333444444444445
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-CCCHhhHHHHH-HHHHhcCChhHHHHH
Q 004744 255 KIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGL-KPGVFTYNSLI-NGLCKKGRCDRAKEV 332 (732)
Q Consensus 255 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li-~~~~~~g~~~~A~~~ 332 (732)
+..+|...++. ...| ....|+..++....... +|.-.+|..+- .++.-.|+.++|.++
T Consensus 132 ~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 55555544441 1111 11222233333322211 12333343332 345566777777776
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHh-------------HHHHHHHHHHhCCCHHHH
Q 004744 333 LDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIV-------------SFSTLIGIFSRNGQLDRA 399 (732)
Q Consensus 333 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-------------~~~~l~~~~~~~g~~~~A 399 (732)
--..++.. ..+....-.-..++.-.++.+.|...|.+.++.+ |+-. .+..-.+-..++|++..|
T Consensus 192 a~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 192 AIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 66666542 1122221111223344666777777777766653 2211 122223345677888888
Q ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH---HHHHHHHHHhcCCHHHHHHHH
Q 004744 400 LMYFREMKSA---GLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVT---YNTILNGLCRAKMLTEADDLF 473 (732)
Q Consensus 400 ~~l~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~ 473 (732)
.+.|.+.+.. +.+++...|........+.|+.++|+.--+...+. |... +..-..++...+++++|.+-|
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877654 23344455666666677778888887777776664 3322 222234455567777777777
Q ss_pred HHHHHc
Q 004744 474 NEMLER 479 (732)
Q Consensus 474 ~~~~~~ 479 (732)
+...+.
T Consensus 345 ~~a~q~ 350 (486)
T KOG0550|consen 345 EKAMQL 350 (486)
T ss_pred HHHHhh
Confidence 776654
No 152
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.87 E-value=0.032 Score=54.58 Aligned_cols=253 Identities=15% Similarity=0.124 Sum_probs=150.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004744 462 RAKMLTEADDLFNEMLERGVFPDFYTF----TTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEME 537 (732)
Q Consensus 462 ~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 537 (732)
-.|+++.|.+-|+.|.. |+.+- ..|.-.--+.|+.+.|.++-+..-..-.. -...+.+.++..|..|+|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 132 LEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWD 205 (531)
T ss_pred hcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChH
Confidence 35666666666666654 22221 22222234566667776666665544221 3455666677777777777
Q ss_pred HHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHH
Q 004744 538 KANKLWADMISRK-ISPNYIS--YGILINGYC---SMGHVTEAFRLWYEMVGKGIKPTLVS-CNTIIKGYCRSGDASKAD 610 (732)
Q Consensus 538 ~A~~~~~~~~~~~-~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~ 610 (732)
.|+++.+.-.... +.++..- -..|+.+-. -.-+...|...-.+..+. .||..- -..-..++.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhh
Confidence 7777776554432 1222221 111221111 112455566655555543 555432 233456788899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 611 EFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN-QGLVPD-VITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
.+++.+-+....|+ .+... .+.+.|+ .++.-+++... ..++|| ......+..+-...|++..|..--+....
T Consensus 284 ~ilE~aWK~ePHP~--ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 284 KILETAWKAEPHPD--IALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred hHHHHHHhcCCChH--HHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 99999888654444 33222 2345554 33333333322 114554 45666777777888999998888888777
Q ss_pred cCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCC
Q 004744 689 KGLNPDRSTYTTLINGHVSQ-NNLKEAFRFHDEMLQRGFVPDD 730 (732)
Q Consensus 689 ~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~pd~ 730 (732)
..|....|..|.+.-... |+-.++..++-+.++..-.|+-
T Consensus 358 --~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 358 --EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred --hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 888888888888887665 9999999999988887777653
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.86 E-value=0.00031 Score=59.18 Aligned_cols=95 Identities=9% Similarity=0.018 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHH
Q 004744 592 SCNTIIKGYCRSGDASKADEFLSKMVSEGVD--PDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD----VITYNV 665 (732)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~ 665 (732)
++...+..+.+.|++++|.+.|.++...... .....+..+...+.+.|++++|...++++... .|+ ...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHH
Confidence 3444555566666666666666666553211 01234444556666666666666666666552 222 334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004744 666 ILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 666 l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
++.++.+.|+.++|...++++.+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH
Confidence 55566666666666666666665
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.84 E-value=0.00072 Score=57.99 Aligned_cols=96 Identities=9% Similarity=-0.075 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004744 172 IFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALC 251 (732)
Q Consensus 172 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (732)
..-.+..-+...|++++|..+|+-+....+. +..-|..|..++-..|++++|+..|..+...+ +.|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3444566677889999999999998888766 78888888888889999999999999888876 577777777888888
Q ss_pred hcCChhHHHHHHHHHHhC
Q 004744 252 KDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 252 ~~g~~~~A~~~~~~~~~~ 269 (732)
..|+.+.|++.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 889988888888887765
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.84 E-value=0.0047 Score=53.63 Aligned_cols=130 Identities=12% Similarity=0.093 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 004744 552 SPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEG---VDPDSISY 628 (732)
Q Consensus 552 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 628 (732)
.|+...--.|.+++...|+..||...|++...--+-.|....-.+..+....++...|...++++.+.. -.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 344444445555566666666666666655543334455555555555555666666666665555532 12222 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004744 629 NTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWR 685 (732)
Q Consensus 629 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 685 (732)
-.+...+...|+..+|..-|+.+.. .-|+...-......+.++|+.++|..-+..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 2344555555666666666666555 334443322233344455555555443333
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00032 Score=56.04 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 004744 628 YNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGH 705 (732)
Q Consensus 628 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 705 (732)
+..++..+...|++++|...++++.+. .| +...+..++..+...|++++|...+++..+ ..| +...+..++.++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHH
Confidence 344555566667777777777776663 33 334556666666667777777777777766 334 335666677777
Q ss_pred HhcCCHHHHHHHHHHHH
Q 004744 706 VSQNNLKEAFRFHDEML 722 (732)
Q Consensus 706 ~~~g~~~~A~~~~~~m~ 722 (732)
...|++++|...+++..
T Consensus 79 ~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 79 YKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 77777777777777665
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00026 Score=66.48 Aligned_cols=128 Identities=19% Similarity=0.121 Sum_probs=97.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 004744 563 NGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD-SISYNTLINGFVREENM 641 (732)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 641 (732)
+-+.+.+++.+|+..|.+.++.. +-|.+.|..=..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 45678899999999999999984 677888888899999999999999999999874 454 67899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHH---HHHHHHHHHHHcCCCCCH
Q 004744 642 DKAFALVSKMENQGLVPDVITYNVILTG-FCRQGRMH---DSELILWRMIEKGLNPDR 695 (732)
Q Consensus 642 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~---~A~~~~~~~~~~g~~p~~ 695 (732)
++|++.|++.++ +.|+..+|-.=+.. =-+.+..+ .+..-++-....|..||.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 999999999999 88987776443333 22333333 333444433344454554
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.83 E-value=0.00031 Score=56.12 Aligned_cols=94 Identities=16% Similarity=0.028 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004744 173 FDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCK 252 (732)
Q Consensus 173 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (732)
+..++..+...|++++|+..|+++.+..+. +..++..+...+...|++++|.+.|....+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344555666667777777777766655433 33555556666666666666666666665543 3333455555555555
Q ss_pred cCChhHHHHHHHHHHh
Q 004744 253 DHKIDSAKMFLCEMEQ 268 (732)
Q Consensus 253 ~g~~~~A~~~~~~~~~ 268 (732)
.|++++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 5666666555555543
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.82 E-value=0.0029 Score=62.50 Aligned_cols=166 Identities=16% Similarity=0.180 Sum_probs=79.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004744 177 IRTYVQARKLREGSEVFRLLRNK----GICF-SINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALC 251 (732)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (732)
.+.|-..|++++|.+.|.++.+. +-.. -...|......+.+ +++++|.+.|++++ ..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~---------------~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAI---------------EIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHH---------------HHHH
Confidence 56677888888888888876542 1110 11223333333323 36666666665553 3455
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhC----CCC-CCHhhHHHHHHHHHhcCC
Q 004744 252 KDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCRE-GFLEEAFQLMNSMSGK----GLK-PGVFTYNSLINGLCKKGR 325 (732)
Q Consensus 252 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~ 325 (732)
+.|++..|-+++.++ ...|-.. |++++|++.|++..+. |-. .-...+..+...+.+.|+
T Consensus 106 ~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 106 EAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred hcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 556555554444433 3334444 6666666666665431 100 012234455555666666
Q ss_pred hhHHHHHHHHHHHCCCCC-----CHH-hHHHHHHHHHcCCCHhHHHHHHHHHHh
Q 004744 326 CDRAKEVLDEMLQMGLSP-----DTA-TYNTLLVESCRKENMSEAEEIFCEMSR 373 (732)
Q Consensus 326 ~~~A~~~~~~~~~~g~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (732)
+++|.++|+++...-... +.. .+...+-++...|+...|.+.+++...
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666655432111 111 122223344445666666666665543
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.81 E-value=5e-05 Score=59.25 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004744 638 EENMDKAFALVSKMENQGLVP---DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKE 713 (732)
Q Consensus 638 ~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 713 (732)
.|++++|+.+++++.+. .| +...+..++.+|.+.|++++|..++++ .+ ..|. ......++.+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHH
Confidence 46777788888877773 33 344555577777788888888888877 33 3332 3455556777888888888
Q ss_pred HHHHHHH
Q 004744 714 AFRFHDE 720 (732)
Q Consensus 714 A~~~~~~ 720 (732)
|++.+++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8877765
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.78 E-value=0.00037 Score=68.79 Aligned_cols=210 Identities=13% Similarity=0.106 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004744 119 MSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRN 198 (732)
Q Consensus 119 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 198 (732)
..|......|-..|++++|...|.++..-.. .+ .........|...+..|.+. ++++|++.++++.+
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~--------~~----~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~ 102 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYE--------KL----GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE 102 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH--------HT----T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHH--------Hc----CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH
Confidence 4455555666777888888888877753110 00 00001133444445555444 77777777666553
Q ss_pred CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhC----CCCC
Q 004744 199 KGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKD-HKIDSAKMFLCEMEQK----GVYP 273 (732)
Q Consensus 199 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----g~~p 273 (732)
.|.+.|++..|-+++..+ ...|-.. |++++|.+.|++..+. | .+
T Consensus 103 ---------------~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~ 151 (282)
T PF14938_consen 103 ---------------IYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SP 151 (282)
T ss_dssp ---------------HHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--H
T ss_pred ---------------HHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-Ch
Confidence 456666666666665554 2344444 6666666666665432 1 11
Q ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-----CHh-hHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCC
Q 004744 274 D--TVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKP-----GVF-TYNSLINGLCKKGRCDRAKEVLDEMLQMG--LSP 343 (732)
Q Consensus 274 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~ 343 (732)
. ..++..++..+.+.|++++|.++|++....-... +.. .|...+-++...|+...|...+++..... +..
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 1 2345566777888888888888888876543221 111 22334445666788888888888877542 111
Q ss_pred C--HHhHHHHHHHHHc--CCCHhHHHHHHHHHH
Q 004744 344 D--TATYNTLLVESCR--KENMSEAEEIFCEMS 372 (732)
Q Consensus 344 ~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 372 (732)
+ ......|+.++-. ...+.++..-|+.+.
T Consensus 232 s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 232 SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 1 2234445555432 223444444444443
No 162
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.77 E-value=4.1e-05 Score=47.56 Aligned_cols=32 Identities=41% Similarity=0.717 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 004744 277 TYNTLINAYCREGFLEEAFQLMNSMSGKGLKP 308 (732)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 308 (732)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 163
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.75 E-value=5.6e-05 Score=46.95 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004744 696 STYTTLINGHVSQNNLKEAFRFHDEMLQRGFVP 728 (732)
Q Consensus 696 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 728 (732)
.+|+.++.+|.+.|+++.|.+++++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 164
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.73 E-value=0.00034 Score=68.06 Aligned_cols=133 Identities=14% Similarity=0.060 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 004744 592 SCNTIIKGYCRSGDASKADEFLSKMVS----EGVD-PDSISYNTLINGFVREENMDKAFALVSKMEN----QGL-VPDVI 661 (732)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~-~p~~~ 661 (732)
.|..+...|.-.|+++.|+...+.-+. .|-. .....+..|.+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344555555566777777766554332 1211 1244566777778888888888887776443 221 12334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 662 TYNVILTGFCRQGRMHDSELILWRMIE----KG-LNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQR 724 (732)
Q Consensus 662 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 724 (732)
+..+|...|.-..++++|+.++.+=+. .+ ..-...++..|+.+|...|..+.|..+.+.-++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 556677777777778888877765432 11 1113456777888888888888888777766543
No 165
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.72 E-value=0.00083 Score=56.53 Aligned_cols=91 Identities=9% Similarity=0.078 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHH
Q 004744 629 NTLINGFVREENMDKAFALVSKMENQGLVPD----VITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD----RSTYTT 700 (732)
Q Consensus 629 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~ 700 (732)
..++..+.+.|++++|.+.++++... .|+ ...+..++.++.+.|++++|...++++.. ..|+ ...+..
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK--KYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HCCCCCcccHHHHH
Confidence 33444455555555555555555542 121 22344455555555555555555555554 2222 234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004744 701 LINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 701 l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
++.++.+.|++++|.+.++++++
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH
Confidence 55555555555555555555553
No 166
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.72 E-value=0.066 Score=53.59 Aligned_cols=71 Identities=14% Similarity=0.263 Sum_probs=38.4
Q ss_pred HHcCCHHHHHHHHHHHhhC--CCCC------------CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHh
Q 004744 286 CREGFLEEAFQLMNSMSGK--GLKP------------GVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGL----SPDTAT 347 (732)
Q Consensus 286 ~~~g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~----~~~~~~ 347 (732)
.+.|++++|.+.+..-.+. +..| |-.-=+..++.+...|++.+++.+++++...=+ .-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4566666666666555443 2111 111124445666677777777777777664322 245566
Q ss_pred HHHHHHHHH
Q 004744 348 YNTLLVESC 356 (732)
Q Consensus 348 ~~~li~~~~ 356 (732)
|+.++-.+.
T Consensus 170 yd~~vlmls 178 (549)
T PF07079_consen 170 YDRAVLMLS 178 (549)
T ss_pred HHHHHHHHh
Confidence 666555543
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.71 E-value=0.00077 Score=66.23 Aligned_cols=129 Identities=13% Similarity=0.132 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 171 LIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVK-IGWVDLAREVYAEVVRSGIELNVYTLNIMVNA 249 (732)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (732)
.+|..+++..-+.+..+.|..+|.++++.+.. +...|-.....-.+ .++.+.|..+|+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 35666666666666777777777777654322 33344444433223 45555577777776664 45566666666677
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004744 250 LCKDHKIDSAKMFLCEMEQKGVYPDT----VTYNTLINAYCREGFLEEAFQLMNSMSG 303 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 303 (732)
+.+.++.+.|+.+|++.... .|.. ..|...+..-.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776654 2222 2566666666666666666666666655
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.71 E-value=0.0025 Score=67.95 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004744 623 PDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYT 699 (732)
Q Consensus 623 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 699 (732)
.+...|..+.-.+...|++++|...+++++. +.|+...|..++..+...|+.++|...++++.. +.|...+|.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~ 490 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLY 490 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHH
Confidence 3456666666666667888888888888888 457777788888888888888888888888887 677655543
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.68 E-value=0.0031 Score=57.13 Aligned_cols=113 Identities=17% Similarity=0.140 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 004744 592 SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD--SISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILT 668 (732)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 668 (732)
.+..+...+...|++++|...|++.++....+. ...+..++..+.+.|++++|...++++.. ..| +...+..++.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 344444455555555555555555554321111 23445555555555666666666555555 233 2334444444
Q ss_pred HHHhcCC--------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004744 669 GFCRQGR--------------MHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNN 710 (732)
Q Consensus 669 ~~~~~g~--------------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 710 (732)
++...|+ +++|..+++++.. ..|+. |..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCchh--HHHHHHHHHhcCc
Confidence 5544444 4556666666655 44543 4444444444443
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.67 E-value=0.0011 Score=67.66 Aligned_cols=92 Identities=9% Similarity=-0.063 Sum_probs=72.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004744 177 IRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKI 256 (732)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (732)
+..+...|++++|++.|+++++.++. +...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 45566778888888888888887765 67778888888888888888888888887764 55667777778888888888
Q ss_pred hHHHHHHHHHHhCC
Q 004744 257 DSAKMFLCEMEQKG 270 (732)
Q Consensus 257 ~~A~~~~~~~~~~g 270 (732)
++|...|++..+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887764
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.65 E-value=0.0033 Score=67.05 Aligned_cols=134 Identities=11% Similarity=0.096 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 004744 586 IKPTLVSCNTIIKGYCR--SG---DASKADEFLSKMVSEGVDPD-SISYNTLINGFVRE--------ENMDKAFALVSKM 651 (732)
Q Consensus 586 ~~~~~~~~~~l~~~~~~--~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~~~ 651 (732)
.+.+...|..++.+... .+ +.+.|+.+|+++++. .|+ ...|..+..++... +++..+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 35555666666655332 22 255677777777663 344 33444333333211 2234555555554
Q ss_pred HHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 652 ENQG-LVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 652 ~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
.... ...++..|..+.-.....|++++|...++++++ +.|+...|..++.++...|+.++|.+.+++..+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4421 234567788887777788999999999999999 778889999999999999999999999999884
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.0021 Score=58.20 Aligned_cols=132 Identities=14% Similarity=-0.024 Sum_probs=92.9
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFS--INACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNI 245 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (732)
.....+..++..|...|++++|+..|+++.+.++.+. ...+..+...+.+.|++++|...+.++++.. +.+...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 3466778888889999999999999999987654432 4678888899999999999999999998864 455667777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 004744 246 MVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGR 325 (732)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 325 (732)
+...+...|+...+..-++.... .+++|.+.+++.... ++..|..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRL----APNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhh----CchhHHHHHHHHHhcCc
Confidence 77888887776555543333221 256667777776654 22335555555554443
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.64 E-value=0.00011 Score=57.23 Aligned_cols=81 Identities=14% Similarity=0.025 Sum_probs=38.1
Q ss_pred cCChHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 004744 183 ARKLREGSEVFRLLRNKGIC-FSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKM 261 (732)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (732)
+|++++|+.+|+++.+..+. ++...+..+..++.+.|++++|.++++. .+.+ +.+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45556666666666555432 1233344455555555666666555555 2211 1122223333455555555555555
Q ss_pred HHHH
Q 004744 262 FLCE 265 (732)
Q Consensus 262 ~~~~ 265 (732)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.0016 Score=66.43 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=53.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 004744 599 GYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMH 677 (732)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~ 677 (732)
.+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..+++++. +.| +...|..++.+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCHH
Confidence 3445566666666666666543 12345555566666666666666666666665 334 3445556666666666666
Q ss_pred HHHHHHHHHHHcCCCCC
Q 004744 678 DSELILWRMIEKGLNPD 694 (732)
Q Consensus 678 ~A~~~~~~~~~~g~~p~ 694 (732)
+|...|+++++ +.|+
T Consensus 88 eA~~~~~~al~--l~P~ 102 (356)
T PLN03088 88 TAKAALEKGAS--LAPG 102 (356)
T ss_pred HHHHHHHHHHH--hCCC
Confidence 66666666666 5554
No 175
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.62 E-value=0.0014 Score=66.85 Aligned_cols=120 Identities=22% Similarity=0.299 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 004744 237 ELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQK--GVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYN 314 (732)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 314 (732)
+.+......+++.+....+++++..++-+.... ...--..|..++|+.|.+.|..++++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 444445555555555555556666665555443 111112234466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 004744 315 SLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESC 356 (732)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 356 (732)
.|++.+.+.|++..|.++..+|...+...+..++..-+.++.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 666666666666666666666655544444444443333333
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0021 Score=61.04 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=73.9
Q ss_pred HHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcC---ChHHHHHHHHHH
Q 004744 155 IVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIG---WVDLAREVYAEV 231 (732)
Q Consensus 155 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~ 231 (732)
+...+-......+.|..-|..|+..|...|+++.|...|++..+..++ |...+..+..++..+. ...++.++|+++
T Consensus 141 l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 141 LIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 333444444556677777777777777777777777777777776544 6666666666654432 355666777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004744 232 VRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 269 (732)
++.+ +.|+.+...|...+...|++.+|...++.|.+.
T Consensus 220 l~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 220 LALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6654 555566666666666777777777777777665
No 177
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.61 E-value=0.096 Score=52.51 Aligned_cols=145 Identities=12% Similarity=0.139 Sum_probs=81.3
Q ss_pred HHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHH
Q 004744 127 FLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSIN 206 (732)
Q Consensus 127 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 206 (732)
++-+.+++++|..+|.++..+.-.++..+- ....-+.++++|...+ .+.-........+..+ ..
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lk------------eEvl~grilnAffl~n-ld~Me~~l~~l~~~~~---~s 78 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLK------------EEVLGGRILNAFFLNN-LDLMEKQLMELRQQFG---KS 78 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHH------------HHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcC---Cc
Confidence 567889999999999888754322221111 1344556777776543 3444444444444321 22
Q ss_pred HHHHHHHHH--HHcCChHHHHHHHHHHHHc--CCC------------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004744 207 ACNSLLGGL--VKIGWVDLAREVYAEVVRS--GIE------------LNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKG 270 (732)
Q Consensus 207 ~~~~ll~~~--~~~g~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 270 (732)
.|-.+..++ -+.+.++.|.+.+...... +.. +|-..-+..+.++.+.|++.+++.+++++...=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344444433 4778888888888766543 211 222233455666677777777777666665432
Q ss_pred C----CCCHHHHHHHHHHHHH
Q 004744 271 V----YPDTVTYNTLINAYCR 287 (732)
Q Consensus 271 ~----~p~~~~~~~li~~~~~ 287 (732)
+ .-++.+|+.++-++.+
T Consensus 159 lkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhH
Confidence 2 2456666665555544
No 178
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.16 Score=54.29 Aligned_cols=341 Identities=11% Similarity=0.080 Sum_probs=176.6
Q ss_pred CCCCCCHHhHH-----HHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCC--HHHHHHHH-HHHHHCC
Q 004744 339 MGLSPDTATYN-----TLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQ--LDRALMYF-REMKSAG 410 (732)
Q Consensus 339 ~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~--~~~A~~l~-~~~~~~~ 410 (732)
.|++....-|. .+++-+...+.+..|.++-..+...-.. ...+|......+.+..+ -+++.+.. +++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 35555554443 3466667777888888877666432212 14555555555555532 12222222 222221
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004744 411 LVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCV----MDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFY 486 (732)
Q Consensus 411 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 486 (732)
. .+..+|..+.+-....|+.+-|..+++.=...+.. .+..-+...+.-..+.|+.+-...++-.+...- +..
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s 579 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRS 579 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHH
Confidence 1 24456777777777788888887776542221111 011112222333344444444444444443320 000
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-H----HCCCCCCHHHHHHH
Q 004744 487 TFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADM-I----SRKISPNYISYGIL 561 (732)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~----~~~~~~~~~~~~~l 561 (732)
+.+....+...|..+|.+..++. |..+ +-+.|....+...+-.+.-+- . ..+..|+ ....
T Consensus 580 ------~l~~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~ 644 (829)
T KOG2280|consen 580 ------SLFMTLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTA 644 (829)
T ss_pred ------HHHHHHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHH
Confidence 11112234455556665554431 1111 222233222222222111111 0 0111222 2233
Q ss_pred HHHHHhcCCH----------HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004744 562 INGYCSMGHV----------TEAFRLWYEMVGK-GIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNT 630 (732)
Q Consensus 562 i~~~~~~g~~----------~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 630 (732)
.+.+.+.... .+-+.+.+.+... |......+.+--+.-+...|+..+|.++-.+.. -||...|..
T Consensus 645 a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wL 720 (829)
T KOG2280|consen 645 ANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWL 720 (829)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHH
Confidence 3444443331 1122222222221 223333445555566677899999998887764 378888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004744 631 LINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNN 710 (732)
Q Consensus 631 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 710 (732)
-+.+++..+++++-+++-+.... +.-|.-...+|.+.|+.+||.+++-+... . ...+.+|.+.|+
T Consensus 721 k~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~ 785 (829)
T KOG2280|consen 721 KLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGD 785 (829)
T ss_pred HHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhcc
Confidence 88899999999888777665442 45577788899999999999998766532 1 156778888899
Q ss_pred HHHHHHHHH
Q 004744 711 LKEAFRFHD 719 (732)
Q Consensus 711 ~~~A~~~~~ 719 (732)
+.+|.+.--
T Consensus 786 ~~eAad~A~ 794 (829)
T KOG2280|consen 786 VKEAADLAA 794 (829)
T ss_pred HHHHHHHHH
Confidence 988887643
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.57 E-value=0.016 Score=55.52 Aligned_cols=83 Identities=7% Similarity=-0.018 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004744 117 SSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLL 196 (732)
Q Consensus 117 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 196 (732)
+...+-.....+...|++++|...|.+++...+.++. .....-.++.+|.+.+++++|+..|++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~---------------a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY---------------SQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444445556667788888888888888754332211 1223345677888888888888888888
Q ss_pred HHCCCccCHHHHHHHHHH
Q 004744 197 RNKGICFSINACNSLLGG 214 (732)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~ 214 (732)
.+..|.-...-+...+.+
T Consensus 96 i~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 96 IRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHhCcCCCchHHHHHHHH
Confidence 877554333333333333
No 180
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.57 E-value=8.5e-05 Score=44.93 Aligned_cols=28 Identities=43% Similarity=0.905 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004744 277 TYNTLINAYCREGFLEEAFQLMNSMSGK 304 (732)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 304 (732)
+|++++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444555555555555555555554444
No 181
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.56 E-value=0.0012 Score=67.29 Aligned_cols=124 Identities=10% Similarity=0.108 Sum_probs=97.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004744 515 SIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISR--KISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVS 592 (732)
Q Consensus 515 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 592 (732)
+.+.+......+++.+....+++++..++.+.... ....-..|..+++..|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556777778888888888888888888887764 1212234556899999999999999999999888999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004744 593 CNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVRE 638 (732)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 638 (732)
+|.+++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888776666667766666555554
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.55 E-value=0.0015 Score=59.01 Aligned_cols=93 Identities=13% Similarity=0.026 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 004744 625 SISYNTLINGFVREENMDKAFALVSKMENQGLVP--DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTL 701 (732)
Q Consensus 625 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 701 (732)
...|..++..+...|++++|+..+++.......+ ...+|..+...+...|++++|...++++.+ +.|+ ..++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence 3344555555556666666666666665521111 123566666666666666666666666665 4443 3445555
Q ss_pred HHHHH-------hcCCHHHHHHHHH
Q 004744 702 INGHV-------SQNNLKEAFRFHD 719 (732)
Q Consensus 702 ~~~~~-------~~g~~~~A~~~~~ 719 (732)
+..+. ..|++++|...++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHH
Confidence 55555 5566554444443
No 183
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.55 E-value=0.0024 Score=62.82 Aligned_cols=130 Identities=10% Similarity=0.076 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004744 521 VTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCS-MGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKG 599 (732)
Q Consensus 521 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 599 (732)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...+..-.. .++.+.|..+|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666677777777777777777776432 2234444444444233 45555577777777765 46666777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 600 YCRSGDASKADEFLSKMVSEGVDPD---SISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
+.+.|+.+.|+.+|++.+.. +.++ ...|...+..-.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777654 2222 23677777777777777777777777776
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.51 E-value=0.0033 Score=56.69 Aligned_cols=81 Identities=11% Similarity=-0.108 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCcc--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICF--SINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMV 247 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 247 (732)
...|..++..+...|++++|+..|+++......+ ...++..+...+...|++++|...++.+++.. +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 5567777888888999999999999998764332 23578888899999999999999999988753 44455666666
Q ss_pred HHHH
Q 004744 248 NALC 251 (732)
Q Consensus 248 ~~~~ 251 (732)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 6666
No 185
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.0065 Score=55.84 Aligned_cols=132 Identities=11% Similarity=0.004 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH----
Q 004744 242 TLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLI---- 317 (732)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li---- 317 (732)
+.+.+++++.-.|++.-....+.+.++...+.+......|++.-.+.||.+.|...|++..+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3444555555555555555555555555444455555555555555666666666665443322222333333222
Q ss_pred -HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhC
Q 004744 318 -NGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRR 374 (732)
Q Consensus 318 -~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (732)
..|.-.+++.+|...+.+....+ +.|...-|.-.-+..-.|+..+|.+.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22334455555555565555443 233333333333333456666666666666554
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.49 E-value=0.0019 Score=63.07 Aligned_cols=131 Identities=15% Similarity=0.101 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHH
Q 004744 488 FTTLIHGHCKDGNMNKALNLFDIMTQ----KSI-KPDIVTYNTLIDGFCKVGEMEKANKLWADMISR----KI-SPNYIS 557 (732)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~ 557 (732)
|..|...|.-.|+++.|+...+.-+. -|- ......+..+.+++.-.|+++.|.+.|+..... |- .....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 44444444445555555555443221 110 012234445555555566666666655543321 11 112233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 558 YGILINGYCSMGHVTEAFRLWYEMVGK-----GIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 618 (732)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (732)
.-+|.+.|.-..++++|+..+..-+.. ...-....+-++..++...|..++|..+.+..++
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445556666666666666666543321 1122345566667777777777777666655543
No 187
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.44 E-value=0.00017 Score=43.60 Aligned_cols=29 Identities=41% Similarity=0.699 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004744 697 TYTTLINGHVSQNNLKEAFRFHDEMLQRG 725 (732)
Q Consensus 697 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 725 (732)
+|+.++++|++.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555666666666666666666665554
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.44 E-value=0.038 Score=52.91 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=25.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 460 LCRAKMLTEADDLFNEMLERGVFPDFY--TFTTLIHGHCKDGNMNKALNLFDIMTQK 514 (732)
Q Consensus 460 ~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (732)
+.+.|++++|.+.|+.+....+.+... ..-.++.++.+.+++++|...+++.++.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 444555555555555555543221111 1123344445555555555555555544
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.44 E-value=0.07 Score=46.65 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHH
Q 004744 588 PTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD---VITYN 664 (732)
Q Consensus 588 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~ 664 (732)
|....-..+..+..+.|+..+|...|++...--...|....-.+..+....+++.+|...++++.+. +|+ +.+..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCchH
Confidence 3333334444444445555555555544443222233444444444444445555555554444442 111 11222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004744 665 VILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAF 715 (732)
Q Consensus 665 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 715 (732)
.+.+.+...|+..+|+..|+.+.. ..|+...-......+.++|+.++|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHH
Confidence 334444444555555555555444 3333332222333344444444443
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.42 E-value=0.00079 Score=50.08 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 004744 660 VITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLINGHVSQN-NLKEAFRFHDEMLQ 723 (732)
Q Consensus 660 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 723 (732)
..+|..++..+...|++++|+..|+++++ +.|+ ...|..++.+|...| ++++|.+.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45566666666677777777777777776 5553 466666777777777 57777777766653
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.41 E-value=0.00077 Score=49.40 Aligned_cols=58 Identities=19% Similarity=0.090 Sum_probs=44.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 004744 176 VIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRS 234 (732)
Q Consensus 176 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 234 (732)
++..+.+.|++++|+..|+++++..+. +...+..+..++.+.|++++|..+|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456677888888888888888877655 6777788888888888888888888887765
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.40 E-value=0.011 Score=49.08 Aligned_cols=106 Identities=18% Similarity=0.103 Sum_probs=65.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Q 004744 176 VIRTYVQARKLREGSEVFRLLRNKGICFS--INACNSLLGGLVKIGWVDLAREVYAEVVRSGIEL---NVYTLNIMVNAL 250 (732)
Q Consensus 176 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 250 (732)
+..++-..|+.++|+..|++....|.... ...+-.+.+.+...|++++|..++++..... +. +......+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 45566777888888888888888776533 3355666677778888888888888776542 22 222223334456
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004744 251 CKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYC 286 (732)
Q Consensus 251 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 286 (732)
...|+.++|...+-..... +...|.--|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 6777777777776655432 3334444444443
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.38 E-value=0.00064 Score=49.84 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=26.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 668 TGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 668 ~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 722 (732)
..+...|++++|...|+++++ ..|+ ...+..++.++...|++++|...+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555555 3342 3455555555555555555555555554
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.34 E-value=0.00097 Score=49.58 Aligned_cols=63 Identities=11% Similarity=0.209 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 004744 624 DSISYNTLINGFVREENMDKAFALVSKMENQGLVPD-VITYNVILTGFCRQG-RMHDSELILWRMIE 688 (732)
Q Consensus 624 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 688 (732)
+...|..+...+...|++++|+..|++.++ +.|+ ...|..++.++...| ++++|+..+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 455677777788888888888888888887 4453 457777777888888 68888888888776
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.013 Score=55.84 Aligned_cols=105 Identities=15% Similarity=0.035 Sum_probs=52.9
Q ss_pred HHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCC
Q 004744 197 RNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDH---KIDSAKMFLCEMEQKGVYP 273 (732)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p 273 (732)
+..++. |...|-.|...|.+.|+++.|..-|.++.+.. +++...+..+..++.... .-.++..+|+++.+.+..
T Consensus 149 L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~- 225 (287)
T COG4235 149 LQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA- 225 (287)
T ss_pred HHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-
Confidence 334444 55555555555555555555555555555543 444455544444443321 123455555555555322
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004744 274 DTVTYNTLINAYCREGFLEEAFQLMNSMSGK 304 (732)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 304 (732)
|+.+...|...+...|++.+|...++.|.+.
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3444444445555555555555555555544
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.30 E-value=0.0056 Score=48.67 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=32.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004744 214 GLVKIGWVDLAREVYAEVVRSGI-ELNVYTLNIMVNALCKDH--------KIDSAKMFLCEMEQKGVYPDTVTYNTLINA 284 (732)
Q Consensus 214 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 284 (732)
.+...+++.....+|+.+.+.|+ -|++.+|+.++.+.++.. ++-+.+.+++.|...+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33334455555555555555554 445555555544443321 112233344444444444555555444443
Q ss_pred H
Q 004744 285 Y 285 (732)
Q Consensus 285 ~ 285 (732)
+
T Consensus 114 L 114 (120)
T PF08579_consen 114 L 114 (120)
T ss_pred H
Confidence 3
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.30 E-value=0.056 Score=56.26 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=21.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004744 262 FLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNS 300 (732)
Q Consensus 262 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 300 (732)
-++++.+.|-.|+... +...++-.|.+.+|-++|.+
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 4556666666666543 23345556677777766654
No 198
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.30 E-value=0.0043 Score=49.30 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-ccCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHcCCCCCHHH
Q 004744 172 IFDLVIRTYVQARKLREGSEVFRLLRNKGI-CFSINACNSLLGGLVKIG--------WVDLAREVYAEVVRSGIELNVYT 242 (732)
Q Consensus 172 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~ 242 (732)
+....|..+...+++..--.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999999 899999999999988763 35677899999999999999999
Q ss_pred HHHHHHHHHh
Q 004744 243 LNIMVNALCK 252 (732)
Q Consensus 243 ~~~l~~~~~~ 252 (732)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.26 E-value=0.0042 Score=59.84 Aligned_cols=86 Identities=10% Similarity=0.001 Sum_probs=42.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcC
Q 004744 601 CRSGDASKADEFLSKMVSEGVDPD--SISYNTLINGFVREENMDKAFALVSKMENQGLVPD----VITYNVILTGFCRQG 674 (732)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g 674 (732)
.+.|++++|+..|+.+++...... ...+-.++..|...|++++|...|+.+.+. .|+ ...+..++..+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcC
Confidence 444555555555555555321110 134444555555555555555555555542 222 223333444455555
Q ss_pred CHHHHHHHHHHHHH
Q 004744 675 RMHDSELILWRMIE 688 (732)
Q Consensus 675 ~~~~A~~~~~~~~~ 688 (732)
+.++|..+|++.++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555555
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.17 E-value=0.063 Score=50.02 Aligned_cols=68 Identities=7% Similarity=-0.006 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004744 119 MSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRN 198 (732)
Q Consensus 119 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 198 (732)
..+-..+..+...|++.+|...|.+++...+. .+..+.+.-.++.+|.+.|++++|...|++.++
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPN---------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455566777788888777777654322 222344555667777777888888888877776
Q ss_pred CCC
Q 004744 199 KGI 201 (732)
Q Consensus 199 ~~~ 201 (732)
.-|
T Consensus 71 ~yP 73 (203)
T PF13525_consen 71 LYP 73 (203)
T ss_dssp H-T
T ss_pred HCC
Confidence 543
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.16 E-value=0.0015 Score=48.43 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=18.0
Q ss_pred cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004744 183 ARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEV 231 (732)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 231 (732)
.|++++|++.|+++....+. +...+..+..+|.+.|++++|.++++.+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444443333332 3333333333333333333333333333
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.16 E-value=0.019 Score=47.62 Aligned_cols=90 Identities=14% Similarity=0.167 Sum_probs=50.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 004744 596 IIKGYCRSGDASKADEFLSKMVSEGVDPD--SISYNTLINGFVREENMDKAFALVSKMENQGLVPD----VITYNVILTG 669 (732)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~ 669 (732)
...++-..|+.++|+.+|++.+..|.... ...+-.+...+...|++++|..++++.... .|+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 34455566666666666666666554433 234445556666667777777776666652 233 1122223334
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 004744 670 FCRQGRMHDSELILWRMI 687 (732)
Q Consensus 670 ~~~~g~~~~A~~~~~~~~ 687 (732)
+...|+.++|...+-..+
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 556677777766665543
No 203
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.15 E-value=0.0013 Score=48.68 Aligned_cols=55 Identities=22% Similarity=0.439 Sum_probs=32.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 637 REENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR 695 (732)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 695 (732)
+.|++++|+++++++... .| +...+..++.+|.+.|++++|..+++++.. ..|+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCH
Confidence 456666666666666653 33 445555666666666666666666666666 45553
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.23 Score=46.12 Aligned_cols=155 Identities=11% Similarity=0.097 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004744 535 EMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLS 614 (732)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (732)
..+...++|++-.. ...+.++..+.-.|.+.-...++++.++...+.++.....+.+.-.+.|+.+.|...|+
T Consensus 164 ~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 164 AEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred chhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 33555666655432 23455666666777788888888888887666677777888888888888888888888
Q ss_pred HHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004744 615 KMVSEGVDPDSISYN-----TLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEK 689 (732)
Q Consensus 615 ~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 689 (732)
...+..-..|..+.+ .....|.-++++.+|...+.+.+... +.|+...|.-+-+..-.|+..+|++.++.|.+
T Consensus 237 ~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~- 314 (366)
T KOG2796|consen 237 DVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ- 314 (366)
T ss_pred HHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 665542222333332 33344556777888888888887742 22444445544445566888889998888888
Q ss_pred CCCCCHHHHH
Q 004744 690 GLNPDRSTYT 699 (732)
Q Consensus 690 g~~p~~~~~~ 699 (732)
..|...+-+
T Consensus 315 -~~P~~~l~e 323 (366)
T KOG2796|consen 315 -QDPRHYLHE 323 (366)
T ss_pred -cCCccchhh
Confidence 666544333
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.97 E-value=0.079 Score=49.35 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=26.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 459 GLCRAKMLTEADDLFNEMLERGVFP--DFYTFTTLIHGHCKDGNMNKALNLFDIMTQK 514 (732)
Q Consensus 459 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (732)
.+.+.|++++|++.|+.+...-+.. -......++.++.+.|+++.|...++..++.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455556666666666555542211 1223344455555556666666555555543
No 206
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.94 E-value=0.023 Score=51.32 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004744 396 LDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGF 430 (732)
Q Consensus 396 ~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~ 430 (732)
-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 45566777777777777777777777776655543
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.93 E-value=0.05 Score=56.60 Aligned_cols=20 Identities=5% Similarity=-0.105 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCChhHHHH
Q 004744 242 TLNIMVNALCKDHKIDSAKM 261 (732)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~ 261 (732)
.+.+-+..|...|.+++|.+
T Consensus 558 p~~~~m~q~Ieag~f~ea~~ 577 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQ 577 (1081)
T ss_pred cccccchhhhhccchhhhhc
Confidence 33444445666666666654
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=96.92 E-value=0.061 Score=46.63 Aligned_cols=93 Identities=12% Similarity=0.022 Sum_probs=78.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004744 175 LVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDH 254 (732)
Q Consensus 175 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (732)
....-+.++|++++|..+|+-+...++. +..-|..|..++-..++++.|...|..+...+ ..|+..+--...+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 3455567899999999999999888776 78888999999999999999999999887665 355555556788999999
Q ss_pred ChhHHHHHHHHHHhC
Q 004744 255 KIDSAKMFLCEMEQK 269 (732)
Q Consensus 255 ~~~~A~~~~~~~~~~ 269 (732)
+.+.|+..|+.....
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999998874
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.91 E-value=0.15 Score=51.19 Aligned_cols=163 Identities=12% Similarity=0.058 Sum_probs=88.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004744 524 NTLIDGFCKVGEMEKANKLWADMISRK---ISPNYISYGILINGYCS---MGHVTEAFRLWYEMVGKGIKPTLVSCNTII 597 (732)
Q Consensus 524 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 597 (732)
..++-+|....+++...++.+.+.... .......--..+-++.+ .|+.++|++++..++.....+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344456777888888888888776541 11122222233444555 788888888888866555577777777777
Q ss_pred HHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH---HH-HHHCCCC---
Q 004744 598 KGYCRS---------GDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENM----DKAFALV---SK-MENQGLV--- 657 (732)
Q Consensus 598 ~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~---~~-~~~~g~~--- 657 (732)
..|-.. ...++|++.|.+.-+. .||..+--.++..+...|.- .+..++- .. +.++|..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 665321 1356667666665542 34433322223333333321 1222322 11 1122221
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 658 PDVITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 658 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
.+--.+.+++.++.-.|+.++|.+..++|.+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 1223345566666667777777777777776
No 210
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.91 E-value=0.41 Score=45.56 Aligned_cols=221 Identities=18% Similarity=0.111 Sum_probs=113.3
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004744 464 KMLTEADDLFNEMLERGVFP-DFYTFTTLIHGHCKDGNMNKALNLFDIMTQK-SIKPDIVTYNTLIDGFCKVGEMEKANK 541 (732)
Q Consensus 464 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 541 (732)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...++++.+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555554443221 2345555566666666666666666665542 122344445555555566666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 542 LWADMISRKISPNYISYGILIN-GYCSMGHVTEAFRLWYEMVGKGI--KPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 618 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (732)
.+.........+ ......... .+...|++++|...+.+...... ......+......+...++.+.+...+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666666543222 111222222 45666666666666666644211 01223333333334555666666666666655
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 619 EGVDP-DSISYNTLINGFVREENMDKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 619 ~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
.. .. ....+..+...+...+++++|...+..... ..|+ ...+..+...+...|..+++...+.+..+
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 11 244555555556666666666666666665 2333 33333444444445556666666666655
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.90 E-value=0.021 Score=55.13 Aligned_cols=83 Identities=10% Similarity=0.079 Sum_probs=40.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHh
Q 004744 636 VREENMDKAFALVSKMENQGLVPDV----ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD----RSTYTTLINGHVS 707 (732)
Q Consensus 636 ~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~ 707 (732)
.+.|++++|+..|+.+++. .|+. ..+..++..|...|++++|...|+++++ ..|+ ...+..++.++..
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~--~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK--NYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhHHHHHHHHHHHH
Confidence 3445555555555555542 2321 2344455555555555555555555554 2221 2344444455555
Q ss_pred cCCHHHHHHHHHHHH
Q 004744 708 QNNLKEAFRFHDEML 722 (732)
Q Consensus 708 ~g~~~~A~~~~~~m~ 722 (732)
.|++++|.+.+++++
T Consensus 230 ~g~~~~A~~~~~~vi 244 (263)
T PRK10803 230 KGDTAKAKAVYQQVI 244 (263)
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555554
No 212
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.46 Score=51.62 Aligned_cols=232 Identities=14% Similarity=0.103 Sum_probs=143.0
Q ss_pred ChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcC--CCCCchHHHHHHHHHHHHcCChHHHHHHHH
Q 004744 117 SSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYS--PCGSNSLIFDLVIRTYVQARKLREGSEVFR 194 (732)
Q Consensus 117 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 194 (732)
+..+.+.++.+|...+++--=..++....+..-. +. ...++-... .+.-.......-+....+...++-|+.+-.
T Consensus 282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~-w~--~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk 358 (933)
T KOG2114|consen 282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIE-WS--FDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAK 358 (933)
T ss_pred CccchhheeehhhhcCcccchHHhHHHHHHHHHh-cC--CcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHH
Confidence 3455677888888877765444444443321000 00 000000000 011123345566778888899999988766
Q ss_pred HHHHCCCccC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004744 195 LLRNKGICFS--INACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVY 272 (732)
Q Consensus 195 ~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 272 (732)
.-. ..++ ........+-+.+.|++++|...|-+.+.. +.| ..++.-|....++.+--..++.+.+.|+.
T Consensus 359 ~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla 429 (933)
T KOG2114|consen 359 SQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA 429 (933)
T ss_pred hcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc
Confidence 432 2222 234455566677899999999999887653 233 23455666666777777888999999876
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004744 273 PDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLL 352 (732)
Q Consensus 273 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 352 (732)
+...-..|+..|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|..+-.+... +......+
T Consensus 430 -~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il- 499 (933)
T KOG2114|consen 430 -NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL- 499 (933)
T ss_pred -cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH-
Confidence 56666789999999999998888777654 3321 12345567777788888888777665532 33333333
Q ss_pred HHHHcCCCHhHHHHHHHHHH
Q 004744 353 VESCRKENMSEAEEIFCEMS 372 (732)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~ 372 (732)
+-..+++++|++.+..+.
T Consensus 500 --le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 500 --LEDLHNYEEALRYISSLP 517 (933)
T ss_pred --HHHhcCHHHHHHHHhcCC
Confidence 345688999999887763
No 213
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.85 E-value=0.02 Score=51.68 Aligned_cols=103 Identities=19% Similarity=0.382 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 004744 274 DTVTYNTLINAYCRE-----GFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATY 348 (732)
Q Consensus 274 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 348 (732)
|..+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~------------ 111 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE------------ 111 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH------------
Confidence 555555555555542 4555555555666666666666666666555432 1111 00000000
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCC
Q 004744 349 NTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQ 395 (732)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 395 (732)
..- .-.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 112 ---F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ---FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 000 112334566666666666666666666666666655543
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.81 E-value=0.0058 Score=46.69 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 661 ITYNVILTGFCRQGRMHDSELILWRMIEK--GLN---PD-RSTYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 661 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
.+|+.+...|...|++++|+..|+++++. -.. |+ ..++..++.+|...|++++|.+++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666777777777777777777776642 111 12 35677777777777777777777777653
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.76 E-value=0.005 Score=46.28 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=43.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 633 NGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR 695 (732)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 695 (732)
..|.+.+++++|.+++++++. +.| +...|...+..+.+.|++++|...|++.++ ..|+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCc
Confidence 456777888888888888887 344 445667777777788888888888888887 55654
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.74 E-value=0.69 Score=45.70 Aligned_cols=284 Identities=15% Similarity=0.110 Sum_probs=158.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH----HHHhcCCH
Q 004744 393 NGQLDRALMYFREMKSAGLVPDNVLYTIIING--YCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILN----GLCRAKML 466 (732)
Q Consensus 393 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~----~~~~~~~~ 466 (732)
.|+-..|.++-.+..+. +..|......++.+ -.-.|++++|.+-|+.|.. |+.+-..=+. .-.+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 45555555555443321 22233333333322 2335777777777777765 3333222222 22356777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH---hcCCHHHHH
Q 004744 467 TEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKS-IKPDIVT--YNTLIDGFC---KVGEMEKAN 540 (732)
Q Consensus 467 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~li~~~~---~~g~~~~A~ 540 (732)
+.|..+-+..-+.-.. -...+...+...|..|+++.|+++.+.-.... +.++..- -..|+.+-. -..+...|.
T Consensus 171 eaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 7777776666554332 34556667777777777777777776554421 2233221 112222111 112344555
Q ss_pred HHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004744 541 KLWADMISRKISPNYISY-GILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSE 619 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (732)
..-.+..+ ..||.+-- ..-...+.+.|+..++-.+++.+-+. .|.+..+..+ .+.+.|+. ++.-+++..+.
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLY--VRARSGDT--ALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHH--HHhcCCCc--HHHHHHHHHHH
Confidence 54444443 34454432 23346778889999999998888877 3444433322 23455552 33333332221
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCC
Q 004744 620 -GVDP-DSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCR-QGRMHDSELILWRMIEKGLNP 693 (732)
Q Consensus 620 -~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p 693 (732)
..+| +..+...+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++...+-+.++..-+|
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 2334 455666777777888888888877777776 57888888877777554 488888888888888754444
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.74 E-value=0.054 Score=47.44 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 630 TLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRM 686 (732)
Q Consensus 630 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 686 (732)
.++..+...|++++|..+.+++.. ..| |...|..++.+|...|+..+|.+.|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444455555555555555555 233 3345555555555555555555555544
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.62 E-value=0.012 Score=44.23 Aligned_cols=54 Identities=13% Similarity=0.101 Sum_probs=25.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 599 GYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
.|.+.+++++|.++++.++..+ +.+...+.....++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444555555555555555432 11333444444455555555555555555554
No 219
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.61 E-value=0.89 Score=45.35 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 004744 278 YNTLINAYCREGFLEEAFQLMN 299 (732)
Q Consensus 278 ~~~li~~~~~~g~~~~A~~~~~ 299 (732)
|..+...-...|+.+-|..+++
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHH
Confidence 4444444455555555555544
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=96.60 E-value=0.07 Score=46.27 Aligned_cols=87 Identities=10% Similarity=-0.056 Sum_probs=48.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004744 600 YCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDS 679 (732)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 679 (732)
+...|++++|..+|+-+...+. -+..-|..|..++-..+++++|+..|..+...+ .-|+..+-..+.++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 3456666666666666555332 234445555566666666666666666655432 12333344455566666666666
Q ss_pred HHHHHHHHH
Q 004744 680 ELILWRMIE 688 (732)
Q Consensus 680 ~~~~~~~~~ 688 (732)
...|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666665
No 221
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.60 E-value=0.91 Score=45.29 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004744 420 IIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDG 499 (732)
Q Consensus 420 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 499 (732)
.-+.-+...|+...|.++..+.. .|+...|...+.+++..++|++-..+-.. + -.+..|...+..|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHHHCC
Confidence 33444455666666655544432 24666666666777777776665543321 1 13355666666666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004744 500 NMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLW 543 (732)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 543 (732)
+..+|..+...+ + +..-+..|.++|++.+|.+.-
T Consensus 252 ~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 777666666551 1 134455666677776665543
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.054 Score=53.70 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 004744 626 ISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLING 704 (732)
Q Consensus 626 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 704 (732)
.+++.|..+|.+.+++.+|++.-++.++.+ ++|.-....-+.+|...|+++.|+..|+++++ +.|+ ..+-..|+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 456667778888888888888888888843 34555666677888888899999999999988 8885 4555566655
Q ss_pred HHhcCCHHHH-HHHHHHHHH
Q 004744 705 HVSQNNLKEA-FRFHDEMLQ 723 (732)
Q Consensus 705 ~~~~g~~~~A-~~~~~~m~~ 723 (732)
-.+..+..+. .++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 5555444443 777888864
No 223
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.54 E-value=1.1 Score=45.29 Aligned_cols=465 Identities=14% Similarity=0.097 Sum_probs=238.1
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004744 193 FRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVY 272 (732)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 272 (732)
+++-++.++. |..+|-.|+.-|..+|.+++.+++|+++..- ++--..+|...+.+=....++...+.+|.+.+....
T Consensus 31 LRerIkdNPt-nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l- 107 (660)
T COG5107 31 LRERIKDNPT-NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL- 107 (660)
T ss_pred HHHHhhcCch-hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-
Confidence 3333344444 8899999999999999999999999999753 355566788888877777899999999999988743
Q ss_pred CCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHH---------hcCChhHHHHHH
Q 004744 273 PDTVTYNTLINAYCREGF---------LEEAFQLMNSMSGKGLKPG-VFTYNSLINGLC---------KKGRCDRAKEVL 333 (732)
Q Consensus 273 p~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~---------~~g~~~~A~~~~ 333 (732)
+...|...+.---+... +-+|.++.-. -.++.|- ...|+..+..+- .+.++|.....+
T Consensus 108 -~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~--~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 108 -NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLG--CAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred -cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHh--cccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 56667666653333221 1223322211 2334443 334444443322 122334444455
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCC
Q 004744 334 DEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKS--AGL 411 (732)
Q Consensus 334 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~--~~~ 411 (732)
.+|+... .|++++-.+-|+..... .|..|-..++. -..--+-.|.+.++++.. .|.
T Consensus 185 ~ral~tP-----------------~~nleklW~dy~~fE~e---~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~Gl 242 (660)
T COG5107 185 MRALQTP-----------------MGNLEKLWKDYENFELE---LNKITARKFVG--ETSPIYMSARQRYQEIQNLTRGL 242 (660)
T ss_pred HHHHcCc-----------------cccHHHHHHHHHHHHHH---HHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhccc
Confidence 5554321 12222222222211110 01111000000 000112233344443321 111
Q ss_pred C----CCHHHH-----------HHHHHHHHHc-----CCH--HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 004744 412 V----PDNVLY-----------TIIINGYCRN-----GFV--LEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEA 469 (732)
Q Consensus 412 ~----~~~~~~-----------~~li~~~~~~-----g~~--~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 469 (732)
. .+..++ ...|+.=... |+. ....-+++..+.. +.-....|--....+...++-+.|
T Consensus 243 ~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 243 SVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred cccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHH
Confidence 1 011111 1122111111 010 0011112222111 111233333333334445555566
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 004744 470 DDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCK---VGEMEKANKLWADM 546 (732)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 546 (732)
......-.+. .|. .-..+...|....+-++....|+...+. ...--..+++=.. .|+++...+++-+-
T Consensus 322 l~tv~rg~~~--sps--L~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr 392 (660)
T COG5107 322 LKTVERGIEM--SPS--LTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKR 392 (660)
T ss_pred HHHHHhcccC--CCc--hheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHH
Confidence 5554433222 112 1111222333334444444445444321 0000001111000 22333233322222
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004744 547 ISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKG-IKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDS 625 (732)
Q Consensus 547 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 625 (732)
.. .-...|...++...+..-++.|..+|-++.+.+ ..+++.++++++..++ .|+...|..+|+.=... -||.
T Consensus 393 ~~----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~ 465 (660)
T COG5107 393 IN----KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDS 465 (660)
T ss_pred Hh----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCc
Confidence 22 145667778888788888899999999998887 6678888888887765 57888888888765553 2443
Q ss_pred HH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004744 626 IS-YNTLINGFVREENMDKAFALVSKMENQGLVPD--VITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLI 702 (732)
Q Consensus 626 ~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 702 (732)
.. -+-.+.-+..-++-+.|..+|+..+.+ +..+ ..+|..++.-=..-|++..+..+=+++.+ +.|...+.....
T Consensus 466 ~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~ 542 (660)
T COG5107 466 TLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFT 542 (660)
T ss_pred hHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHH
Confidence 33 345566677888889999999976653 3333 45788888877788999888888888887 666554444443
Q ss_pred HHH
Q 004744 703 NGH 705 (732)
Q Consensus 703 ~~~ 705 (732)
.-|
T Consensus 543 Sry 545 (660)
T COG5107 543 SRY 545 (660)
T ss_pred HHH
Confidence 333
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.53 E-value=0.01 Score=45.34 Aligned_cols=69 Identities=7% Similarity=0.045 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCC-chHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004744 118 SMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGS-NSLIFDLVIRTYVQARKLREGSEVFRLL 196 (732)
Q Consensus 118 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 196 (732)
..+++.+..+|...|++++|...|++++... ..+....+ -..++..++.+|...|++++|++.|++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIE------------EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH------------HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678999999999999999999999998521 11111111 2567888888999999999999988887
Q ss_pred HH
Q 004744 197 RN 198 (732)
Q Consensus 197 ~~ 198 (732)
.+
T Consensus 73 l~ 74 (78)
T PF13424_consen 73 LD 74 (78)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.52 E-value=0.032 Score=56.61 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 587 KPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDS----ISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 587 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|+.++|+..++++++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566777777777777777777777777664 3442 3467777777777777777777777776
No 226
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.06 Score=51.59 Aligned_cols=115 Identities=13% Similarity=0.148 Sum_probs=50.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHH
Q 004744 568 MGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISY----NTLINGFVREENMDK 643 (732)
Q Consensus 568 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~ 643 (732)
.|+..+|...|+++++. .|.|...++-.-++|.-.|+.+.-...+++++.. ..+|...| ..+..++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34455555555555443 3444444444445555555555555555544432 11222111 122233344555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004744 644 AFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWR 685 (732)
Q Consensus 644 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 685 (732)
|.+..++..+.+ +.|.-.-.++...+...|+..++.++.++
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555554421 11222333444444455555555554443
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.46 E-value=0.015 Score=59.04 Aligned_cols=99 Identities=13% Similarity=0.062 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004744 623 PDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVI----TYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTY 698 (732)
Q Consensus 623 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 698 (732)
.+...++.+..+|.+.|++++|+..|++.++ +.|+.. .|..+..+|.+.|+.++|+..++++++.+ .| .|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 3577899999999999999999999999998 677743 58999999999999999999999999831 22 22
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHHCCCC
Q 004744 699 TTLIN--GHVSQNNLKEAFRFHDEMLQRGFV 727 (732)
Q Consensus 699 ~~l~~--~~~~~g~~~~A~~~~~~m~~~g~~ 727 (732)
..+.. .+....+.++..++++.+.+.|..
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 22211 112233445777788877776653
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.22 Score=45.78 Aligned_cols=35 Identities=6% Similarity=0.118 Sum_probs=25.5
Q ss_pred CCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 004744 112 PNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVR 146 (732)
Q Consensus 112 ~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~ 146 (732)
|++..-...|..-..+|-.++.|++|...+.++.+
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 55555566677777777888888888887777763
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.40 E-value=0.94 Score=45.69 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004744 486 YTFTTLIHGHCKDGNMNKALNLFDIMTQKS---IKPDIVTYNTLIDGFCK---VGEMEKANKLWADMISRKISPNYISYG 559 (732)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~ 559 (732)
.+...++-+|....+++.-+++.+.+.... +......-....-++.+ .|+.++|+.++..+......+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344456667888899999999999887651 11122222234445666 889999999999877666777888888
Q ss_pred HHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHH----HHHCCC-
Q 004744 560 ILINGYCSM---------GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDA----SKADEFLSK----MVSEGV- 621 (732)
Q Consensus 560 ~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~----~~~~~~- 621 (732)
.+...|... ...++|+..|.+.-+. .||..+--.++..+...|.. .+..++--+ +.+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 888877421 2366788888776654 35554444444444455542 233444311 112332
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 622 --DPDSISYNTLINGFVREENMDKAFALVSKMENQ 654 (732)
Q Consensus 622 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 654 (732)
..+-.-+.+++.++.-.|+.++|.+..++|...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 234445567888888899999999999999873
No 230
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.37 E-value=0.12 Score=50.16 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=23.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004744 460 LCRAKMLTEADDLFNEMLERG--VFPDFYTFTTLIHGHCKDGNMNKALN 506 (732)
Q Consensus 460 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (732)
+....+.++|+..+.+.+.+- ...-..++..+..+.++.|.+++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 445566666666666555431 11112344455555566666555544
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.31 E-value=1 Score=42.70 Aligned_cols=221 Identities=18% Similarity=0.093 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004744 429 GFVLEALKMRDEMLEKGCVM-DVVTYNTILNGLCRAKMLTEADDLFNEMLER-GVFPDFYTFTTLIHGHCKDGNMNKALN 506 (732)
Q Consensus 429 g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (732)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444444444444432221 2344555555555666666666666555431 112234444555555555556666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004744 507 LFDIMTQKSIKPDIVTYNTLID-GFCKVGEMEKANKLWADMISRKI--SPNYISYGILINGYCSMGHVTEAFRLWYEMVG 583 (732)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 583 (732)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.++|...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666555433222 111112222 45566666666666666544211 01222333333334455666666666666655
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 584 KGIKP-TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD-SISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 584 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
.. +. ....+..+...+...++.+.|...+....... |+ ...+..+...+...+..+++...+.+...
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 42 22 34555555555666666666666666655532 22 22333333333345556666666666555
No 232
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.17 E-value=2.2 Score=45.06 Aligned_cols=410 Identities=11% Similarity=0.054 Sum_probs=206.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSIN-ACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVN 248 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (732)
...|+.||.---....++.+..+++.++.. .|... -|.....-=.+.|..+.+.++|++.+. +++.++..|.....
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 445666654433334456666777777644 24443 566667777788999999999999986 46788888888776
Q ss_pred HHHh-cCChhHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH---h
Q 004744 249 ALCK-DHKIDSAKMFLCEMEQK-GVY-PDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLC---K 322 (732)
Q Consensus 249 ~~~~-~g~~~~A~~~~~~~~~~-g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---~ 322 (732)
.++. .|+.+..+..|+..... |.. .....|...|..-..++++.....++++.++. ...-++....-|. +
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHh
Confidence 6664 47777788888887764 221 24556888888778889999999999999874 2222333322222 1
Q ss_pred c------CChhHHHHHHHHHHHC---C-CCCCHHhHHHHHHHHHc-CCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 004744 323 K------GRCDRAKEVLDEMLQM---G-LSPDTATYNTLLVESCR-KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFS 391 (732)
Q Consensus 323 ~------g~~~~A~~~~~~~~~~---g-~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 391 (732)
. -..+++.++-....+. . ..+....+..-+.--.. .+..+++..+..+.. ...-.++.
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~ 266 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQ 266 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHH
Confidence 1 1222332222222210 0 00000011111110000 111111111111111 11111222
Q ss_pred hCCCHHHHHHHHHHHHHCC---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 004744 392 RNGQLDRALMYFREMKSAG---L----VPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAK 464 (732)
Q Consensus 392 ~~g~~~~A~~l~~~~~~~~---~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 464 (732)
......+....|+.-.+.. + .++..+|...+.--.+.|+.+...-+++...-- +..-...|-..+......|
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~ 345 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSG 345 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcC
Confidence 2333333334444333321 1 123356676777777777777777777766541 1123344555555555567
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH---
Q 004744 465 MLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIV-TYNTLIDGFCKVGEMEKAN--- 540 (732)
Q Consensus 465 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~--- 540 (732)
+.+-|..++....+--++-.+.+-..-....-..|+++.|..+++.+... . |+.. .-..-+....+.|..+.+.
T Consensus 346 ~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~ 423 (577)
T KOG1258|consen 346 DVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKN 423 (577)
T ss_pred chhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHH
Confidence 77777766666555433322222211122223356777777777777654 2 3322 1222234445566666665
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004744 541 KLWADMISRKISPNYISYGILING-----YCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRS 603 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 603 (732)
+++........ +......+.-- +.-.++.+.|..++.++.+. .+++...|..++......
T Consensus 424 ~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 424 ELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 33332222111 11111111111 22345666666666666655 355555566555554433
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.15 E-value=0.1 Score=42.63 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=63.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH--HHHHHHHHHHHhcCC
Q 004744 599 GYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQ-GLVPDV--ITYNVILTGFCRQGR 675 (732)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p~~--~~~~~l~~~~~~~g~ 675 (732)
++...|+.+.|++.|.+.+..- +-....||.-..++.-.|+.++|+.-+++..+. |-.... ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 5667788888888888877642 235677888888888888888888888887773 211111 234444455667788
Q ss_pred HHHHHHHHHHHHHcCC
Q 004744 676 MHDSELILWRMIEKGL 691 (732)
Q Consensus 676 ~~~A~~~~~~~~~~g~ 691 (732)
-+.|..-|+.+.+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888888877553
No 234
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.09 E-value=2.4 Score=44.76 Aligned_cols=115 Identities=11% Similarity=0.176 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH-hcCChhHHHHHH
Q 004744 256 IDSAKMFLCEMEQKGVYPDTV-TYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLC-KKGRCDRAKEVL 333 (732)
Q Consensus 256 ~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~ 333 (732)
.+.++.++..++.. .|-.. -|.....--.+.|..+.+.++|++... |++-....|......+. ..|+.+.....|
T Consensus 61 ~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 61 VDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 34455555555544 34443 344455555566777777777777665 34445555555444333 345666666666
Q ss_pred HHHHHC-CCC-CCHHhHHHHHHHHHcCCCHhHHHHHHHHHHh
Q 004744 334 DEMLQM-GLS-PDTATYNTLLVESCRKENMSEAEEIFCEMSR 373 (732)
Q Consensus 334 ~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (732)
+..+.. |.. .....|...|.--..++++.....+++++++
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 666543 211 1233455555555556666666666666665
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=96.06 E-value=0.45 Score=48.70 Aligned_cols=145 Identities=12% Similarity=0.078 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004744 536 MEKANKLWADMISR-KISPN-YISYGILINGYCSM---------GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSG 604 (732)
Q Consensus 536 ~~~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 604 (732)
.+.|..+|.+.... ...|+ ...|..+..++... ....+|.++-+..++.+ +.|......+..+....|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 44566666666621 11222 33444443333221 12334555555555554 445555555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHH
Q 004744 605 DASKADEFLSKMVSEGVDPD-SISYNTLINGFVREENMDKAFALVSKMENQGLVPDV---ITYNVILTGFCRQGRMHDSE 680 (732)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~ 680 (732)
+++.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+ +.|.. .+....++.|+.. ..++|+
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 566666666655553 233 33444444444555666666666666554 34432 1222233344443 345555
Q ss_pred HHHHHH
Q 004744 681 LILWRM 686 (732)
Q Consensus 681 ~~~~~~ 686 (732)
+++.+-
T Consensus 428 ~~~~~~ 433 (458)
T PRK11906 428 KLYYKE 433 (458)
T ss_pred HHHhhc
Confidence 555443
No 236
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=2.8 Score=45.28 Aligned_cols=343 Identities=13% Similarity=0.083 Sum_probs=184.3
Q ss_pred CCCCCCHhhHH-----HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCH--hHHHHHH-HHHHhCC
Q 004744 304 KGLKPGVFTYN-----SLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENM--SEAEEIF-CEMSRRG 375 (732)
Q Consensus 304 ~g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~-~~~~~~g 375 (732)
-|++.+..-|. .++.-+...+.+..|+++-..+...-.. +...|.....-+.+..+. +++.+.+ +++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 35555555443 4456677788888888887766532111 145666666666665322 2222222 233221
Q ss_pred CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH
Q 004744 376 VAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVP----DNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVV 451 (732)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 451 (732)
. -...+|..++......|+.+-|..+++.=...+... +..-+...+.-..+.|+.+-...++-.+..+ .+..
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s 579 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS 579 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH
Confidence 2 245678888888888899988888876422111000 0011222333344445555544444444332 1111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HHCCCCCCHHHHHHH
Q 004744 452 TYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIM-----TQKSIKPDIVTYNTL 526 (732)
Q Consensus 452 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~~~~l 526 (732)
.+.. -..+...|..+|.+..+.. |. ..+-+.|-...+...+-.+.-+- ...+..|+ ....
T Consensus 580 ~l~~------~l~~~p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~ 644 (829)
T KOG2280|consen 580 SLFM------TLRNQPLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTA 644 (829)
T ss_pred HHHH------HHHhchhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHH
Confidence 1111 1223455666666655431 11 11222232223332222221111 01122222 2334
Q ss_pred HHHHHhcCCHHHH----------HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004744 527 IDGFCKVGEMEKA----------NKLWADMISR-KISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNT 595 (732)
Q Consensus 527 i~~~~~~g~~~~A----------~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 595 (732)
.+.+.+.....-. +++.+.+... +..-.-.+.+--+.-+...|+..+|.++-.+.. -||...|-.
T Consensus 645 a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wL 720 (829)
T KOG2280|consen 645 ANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWL 720 (829)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHH
Confidence 4445444332211 1222222211 211122234444556677899999998887764 678888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004744 596 IIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGR 675 (732)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 675 (732)
-+.+++..+++++-+++-+... .+.-|.-....|.+.|+.+||.+++.+... .. -...+|.+.|+
T Consensus 721 k~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~ 785 (829)
T KOG2280|consen 721 KLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGD 785 (829)
T ss_pred HHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhcc
Confidence 8999999999998777665443 245577788899999999999999887543 11 46778889999
Q ss_pred HHHHHHHHHHH
Q 004744 676 MHDSELILWRM 686 (732)
Q Consensus 676 ~~~A~~~~~~~ 686 (732)
+.+|.+..-+-
T Consensus 786 ~~eAad~A~~~ 796 (829)
T KOG2280|consen 786 VKEAADLAAEH 796 (829)
T ss_pred HHHHHHHHHHh
Confidence 99998765443
No 237
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=3.1 Score=45.62 Aligned_cols=148 Identities=17% Similarity=0.207 Sum_probs=66.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 004744 245 IMVNALCKDHKIDSAKMFLCEMEQKGVYPDTV--TYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCK 322 (732)
Q Consensus 245 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 322 (732)
.-+..+++...++.|..+-.. .+..++.. ......+-+.+.|++++|...+-+.+.. ++| ..++.-|..
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 345555555555555554332 22222211 1222233344456666666655554432 121 223444444
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHH
Q 004744 323 KGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMY 402 (732)
Q Consensus 323 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l 402 (732)
..+..+-...++.+.+.|+. +...-+.|+.+|.+.++.++-.+..+... .|.- ..-....+..+.+.+-.++|..+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 44555555555555555532 33333455566666666555555444332 1111 11123344444555555555444
Q ss_pred HHH
Q 004744 403 FRE 405 (732)
Q Consensus 403 ~~~ 405 (732)
-.+
T Consensus 486 A~k 488 (933)
T KOG2114|consen 486 ATK 488 (933)
T ss_pred HHH
Confidence 433
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.17 Score=50.38 Aligned_cols=23 Identities=4% Similarity=0.007 Sum_probs=17.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 004744 176 VIRTYVQARKLREGSEVFRLLRN 198 (732)
Q Consensus 176 l~~~~~~~g~~~~A~~~~~~~~~ 198 (732)
-++.|.+.|++..|..-|+++..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~ 236 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVS 236 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHH
Confidence 35567888888888888887654
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.00 E-value=0.076 Score=46.47 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 004744 172 IFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVR-----SGIELNVYT 242 (732)
Q Consensus 172 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 242 (732)
+...++..+...|++++|+...+.+....|. |...|..++.+|...|+..+|.++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555566666666666666666666544 666666666666666666666666666542 255555444
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=0.11 Score=49.01 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCC-HHHHHHH
Q 004744 627 SYNTLINGFVREENMDKAFALVSKMENQGLVP---DVITYNVILTGFCRQGRMHDSELILWRMIE-KGLNPD-RSTYTTL 701 (732)
Q Consensus 627 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~-~~~~~~l 701 (732)
.|+.-++ +.+.|++.+|...|...++.. +. ....+..|+.++...|++++|..+|..+.+ .+-.|- +..+.-|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3444443 345666777777777776632 11 122344577777777777777777777766 333332 3667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004744 702 INGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 702 ~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
+.+..+.|+.++|...|+++.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 7777777777777777777764
No 241
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.91 E-value=1.3 Score=40.18 Aligned_cols=63 Identities=14% Similarity=0.054 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 555 YISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 618 (732)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (732)
+..||-+.--+...|+++.|.+.|+...+.+..-+-...|.-+..| -.|+++-|.+-+.+.-.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHh
Confidence 3455555555556666666666666665553222333333333222 24556655555555444
No 242
>PRK11906 transcriptional regulator; Provisional
Probab=95.90 E-value=1 Score=46.31 Aligned_cols=148 Identities=13% Similarity=0.070 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004744 500 NMNKALNLFDIMTQK-SIKPD-IVTYNTLIDGFCK---------VGEMEKANKLWADMISRKISPNYISYGILINGYCSM 568 (732)
Q Consensus 500 ~~~~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 568 (732)
..+.|+.+|.+.... ...|+ ...|..+..++.. ..+..+|.++-++..+.+.. |......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 456677777777621 12333 3344444333321 12344566666666666433 666666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 004744 569 GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD---SISYNTLINGFVREENMDKAF 645 (732)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 645 (732)
++++.|...|++....+ |....+|........-.|+.++|.+.+++..+. .|. ....-..++.|+.. .+++|+
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 77777777777777653 333455555555566677777777777776653 233 22233334455544 456666
Q ss_pred HHHHHHH
Q 004744 646 ALVSKME 652 (732)
Q Consensus 646 ~~~~~~~ 652 (732)
+++-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 6654433
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.84 E-value=0.59 Score=49.77 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 488 FTTLIHGHCKDGNMNKALNLFDIMTQ 513 (732)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (732)
+..++....-.||-+.+++.+.+..+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 44455555556777777776666554
No 244
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.83 E-value=2.8 Score=47.83 Aligned_cols=139 Identities=14% Similarity=0.169 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004744 453 YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCK 532 (732)
Q Consensus 453 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 532 (732)
|...++.--+.|.+.+|..++..=.+. -...|.+...-+...+.+++|.-.|+..-+. .--+.+|..
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~ 977 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKE 977 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHH
Confidence 333444444556666666555322111 1233444445555566677776666654321 223556667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004744 533 VGEMEKANKLWADMISRKISPNYI--SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKAD 610 (732)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 610 (732)
+|+|++|+.+..++... .+.. +-..|+.-+...+++-+|-++..+.... | ...+..|++...+++|.
T Consensus 978 ~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 978 CGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEAL 1046 (1265)
T ss_pred hccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHH
Confidence 77777777776665432 1222 2245666677777777777777766542 1 12233445555566666
Q ss_pred HHHHH
Q 004744 611 EFLSK 615 (732)
Q Consensus 611 ~~~~~ 615 (732)
.+...
T Consensus 1047 rva~~ 1051 (1265)
T KOG1920|consen 1047 RVASK 1051 (1265)
T ss_pred HHHHh
Confidence 55443
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.78 E-value=0.21 Score=40.94 Aligned_cols=93 Identities=14% Similarity=-0.064 Sum_probs=70.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhc
Q 004744 177 IRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYT---LNIMVNALCKD 253 (732)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~ 253 (732)
.-+....|+++.|++.|.+.+..-+. ....||.-..++--+|+.++|++-++++++..-+.+... |..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 44577889999999999999887666 788999999999999999999999998887532333322 22223446667
Q ss_pred CChhHHHHHHHHHHhCC
Q 004744 254 HKIDSAKMFLCEMEQKG 270 (732)
Q Consensus 254 g~~~~A~~~~~~~~~~g 270 (732)
|+.+.|+.-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888777776
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.78 E-value=1.7 Score=40.78 Aligned_cols=180 Identities=17% Similarity=0.132 Sum_probs=103.2
Q ss_pred HHHHhhc-cChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCC
Q 004744 88 EVLYRLR-DNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPC 166 (732)
Q Consensus 88 ~~l~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 166 (732)
..+...+ +++..|.+.|+.+.+.+|.-..+..+--.++-++.+.+++++|...+++.++..+.+++.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~------------ 107 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA------------ 107 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh------------
Confidence 3444443 688999999999998888777788888889999999999999999999999876654432
Q ss_pred CCchHHHHHHHHHHHH-----cCC---hHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 004744 167 GSNSLIFDLVIRTYVQ-----ARK---LREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIEL 238 (732)
Q Consensus 167 ~~~~~~~~~l~~~~~~-----~g~---~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 238 (732)
..++-..+-++.. ..+ ..+|+.-|+.++.+ -||.. -..+|......+...
T Consensus 108 ---dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~---- 165 (254)
T COG4105 108 ---DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA---- 165 (254)
T ss_pred ---hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH----
Confidence 1111111111111 112 34445555555544 12221 111111111111100
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004744 239 NVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPD----TVTYNTLINAYCREGFLEEAFQLMNSMSG 303 (732)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 303 (732)
=..-=..+.+.|.+.|.+..|..-+++|.+. .|+ ....-.+..+|...|-.++|.+.-.-+..
T Consensus 166 LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 166 LAGHEMAIARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 0000123456677777777777777777766 222 22344556677777777777766555544
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=1.7 Score=41.69 Aligned_cols=141 Identities=16% Similarity=0.116 Sum_probs=67.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 004744 250 LCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRA 329 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 329 (732)
....|++.+|...|......... +...--.++..|...|+.+.|..++..+...--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34445555555555555554322 23344445556666666666666666554431111111111223333344444444
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhCC
Q 004744 330 KEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRR--GVAPDIVSFSTLIGIFSRNG 394 (732)
Q Consensus 330 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~g 394 (732)
..+-.+.-.. +.|...-..+...+...|+.++|.+.+-.+.++ |.. |...-..++..+.-.|
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 4444443332 224445555666666666666666665555443 222 3444555555554444
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.65 E-value=0.04 Score=36.29 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHH
Q 004744 171 LIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLL 212 (732)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 212 (732)
.+|..+...|.+.|++++|+++|+++++..+. |...|..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 35667777788888888888888888777665 666665543
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.64 E-value=1.3 Score=45.59 Aligned_cols=166 Identities=14% Similarity=0.103 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004744 173 FDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCK 252 (732)
Q Consensus 173 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (732)
-..++..--+..+...-++.-+++++.++. -+..|..|.. -......+|.++|++.++.|- ..+.+
T Consensus 171 Aq~IMq~AWRERnp~aRIkaA~eALei~pd-CAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE-----------~~lg~ 236 (539)
T PF04184_consen 171 AQEIMQKAWRERNPQARIKAAKEALEINPD-CADAYILLAE--EEASTIVEAEELLRQAVKAGE-----------ASLGK 236 (539)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhh-hhHHHhhccc--ccccCHHHHHHHHHHHHHHHH-----------Hhhch
Confidence 334455555677777777888888776322 1122322221 123457889999998887640 00111
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCChhHHHH
Q 004744 253 DHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLK-PGVFTYNSLINGLCKKGRCDRAKE 331 (732)
Q Consensus 253 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~ 331 (732)
....+..-...+.+..+...|-..+-..+....-+.|+.++|++.+++|.+.... .+......|+.++...+.+.++..
T Consensus 237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 0000111112222223322222333344666667789999999999999765322 234567788899999999999999
Q ss_pred HHHHHHHCCCCCC-HHhHHHHH
Q 004744 332 VLDEMLQMGLSPD-TATYNTLL 352 (732)
Q Consensus 332 ~~~~~~~~g~~~~-~~~~~~li 352 (732)
++.+.-+...+.. ..+|+..+
T Consensus 317 lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHhccccCCchHHHHHHHHH
Confidence 9988765433222 23565544
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=1 Score=43.04 Aligned_cols=147 Identities=14% Similarity=0.129 Sum_probs=93.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004744 177 IRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKI 256 (732)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (732)
.......|++.+|...|.......+. +...--.+...|...|+.+.|..++..+...--.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34566788888898888888877655 55666778888888888888888888765432112222222334455555555
Q ss_pred hHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCChhH
Q 004744 257 DSAKMFLCEMEQKGVYP-DTVTYNTLINAYCREGFLEEAFQLMNSMSGK--GLKPGVFTYNSLINGLCKKGRCDR 328 (732)
Q Consensus 257 ~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~ 328 (732)
.+...+-.+.... | |...-..+...+...|+.++|++.+-.+..+ |.. |...-..++..+.-.|..+.
T Consensus 220 ~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCH
Confidence 5555555555443 3 5666667777888888888888877776554 333 44455555555555554333
No 251
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.61 E-value=0.22 Score=41.84 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004744 589 TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILT 668 (732)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 668 (732)
|..++..++.++++.|+.+....+++..- |+..+... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566677777777777777777665443 23222100 0000 1112335677778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 004744 669 GFCRQGRMHDSELILWRMIE-KGLNPDRSTYTTLINGHV 706 (732)
Q Consensus 669 ~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~ 706 (732)
+|+..|++..|.++++...+ .+++-+...|..|+.-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888887776 566656777777775444
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=2.4 Score=39.24 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004744 558 YGILINGYCSMGHVTEAFRLWYEMVGKG---IKPTLVSCNTIIKGYCRSGDASKADEFL 613 (732)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (732)
|...|-.|.-..++..|...+++-.+.+ -+.+..+...|+.+|- .|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 3344444555567777777777643321 2334566666776663 46666655444
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.20 E-value=2.6 Score=41.39 Aligned_cols=229 Identities=10% Similarity=0.026 Sum_probs=127.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcC-CCCCHHHHHHHHHHHHh
Q 004744 425 YCRNGFVLEALKMRDEMLEKG--CVMDVVTYNTILNGLCRAKMLTEADDLFNEML----ERG-VFPDFYTFTTLIHGHCK 497 (732)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~-~~~~~~~~~~li~~~~~ 497 (732)
+....+.++|+..+.+.+.+- ..--..++..+..+.++.|.+++++..--.-+ +.. -..-...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778889988888776641 11123456667778888888877665432211 110 00012345556666666
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc
Q 004744 498 DGNMNKALNLFDIMTQK-SIKPD---IVTYNTLIDGFCKVGEMEKANKLWADMISRKI-----SPNYISYGILINGYCSM 568 (732)
Q Consensus 498 ~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~ 568 (732)
..++.+++.+-+.-... |..|. -.....+..++...+.++++++.|+...+... ......+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66666666655544432 22221 12223455566666777888888877665311 11234667777778888
Q ss_pred CCHHHHHHHHHHHHhC----CCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHH
Q 004744 569 GHVTEAFRLWYEMVGK----GIKPTLV-----SCNTIIKGYCRSGDASKADEFLSKMVSE----GVDP-DSISYNTLING 634 (732)
Q Consensus 569 g~~~~A~~~~~~~~~~----~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~ 634 (732)
.++++|.-...+..+. ++..-.. ....+.-++...|..-.|.+.-++..+. |-.+ .......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 8888877666554432 2221111 2223344566667777777776665442 3211 12334456677
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004744 635 FVREENMDKAFALVSKMEN 653 (732)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~ 653 (732)
|...|+.+.|+.-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 7777777777776666543
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.18 E-value=0.048 Score=35.90 Aligned_cols=39 Identities=23% Similarity=0.506 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 004744 662 TYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLI 702 (732)
Q Consensus 662 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 702 (732)
+|..+..+|...|++++|++.|+++++ ..|+ ...|..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHhh
Confidence 455666777777777777777777777 5553 45554443
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.16 E-value=2.9 Score=39.36 Aligned_cols=54 Identities=20% Similarity=0.151 Sum_probs=26.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 461 CRAKMLTEADDLFNEMLERGVF--PDFYTFTTLIHGHCKDGNMNKALNLFDIMTQK 514 (732)
Q Consensus 461 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (732)
.+.|++++|.+.|+.+..+.+. -...+...++-++.+.+++++|+...++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4455556666655555544221 11223334444555555555555555555543
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.16 E-value=2.3 Score=45.32 Aligned_cols=154 Identities=10% Similarity=0.098 Sum_probs=87.4
Q ss_pred hhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHH
Q 004744 97 LQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLV 176 (732)
Q Consensus 97 ~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 176 (732)
...+...|+-+.+.-| .....++++.+=.|+-+.+++++.+..+..+.... +..-+ ...|...
T Consensus 173 v~~G~G~f~L~lSlLP------p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~-la~L~----------LL~y~~~ 235 (468)
T PF10300_consen 173 VYFGFGLFNLVLSLLP------PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSP-LAALV----------LLWYHLV 235 (468)
T ss_pred HHHHHHHHHHHHHhCC------HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchH-HHHHH----------HHHHHHH
Confidence 4445666776666544 46778888888899999999999888653333221 11100 1233333
Q ss_pred HHHHHH----cCChHHHHHHHHHHHHCCCccCHHHHHHHH-HHHHHcCChHHHHHHHHHHHHcCC-CC--CHHHHHHHHH
Q 004744 177 IRTYVQ----ARKLREGSEVFRLLRNKGICFSINACNSLL-GGLVKIGWVDLAREVYAEVVRSGI-EL--NVYTLNIMVN 248 (732)
Q Consensus 177 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~ 248 (732)
+..++. ....+.|.++++.+.++ .|+...|...- +.+...|+.++|.+.|+.+..... .+ ....+--+..
T Consensus 236 ~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w 313 (468)
T PF10300_consen 236 VPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAW 313 (468)
T ss_pred HHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHH
Confidence 333332 45677788888888776 45666554443 455667788888888886653110 01 1111222333
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 004744 249 ALCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~~ 269 (732)
.+.-.+++++|...|.++.+.
T Consensus 314 ~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 314 CHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHchHHHHHHHHHHHHhc
Confidence 344455555555555555543
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.15 E-value=0.5 Score=44.68 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004744 120 SLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNK 199 (732)
Q Consensus 120 ~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 199 (732)
.|+.-+. +.+.|++.+|...|...+++.+. ....+..+--|+.++...|++++|..+|..+.+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~---------------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~ 207 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPN---------------STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD 207 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCC---------------CcccchhHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 4444443 34667788888888888865332 1222334444778888888888888888888765
Q ss_pred CCc-c-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 004744 200 GIC-F-SINACNSLLGGLVKIGWVDLAREVYAEVVRS 234 (732)
Q Consensus 200 ~~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 234 (732)
-++ | -+..+-.|...+.+.|+.++|...|+++++.
T Consensus 208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 332 1 2356677777788888888888888888775
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.06 E-value=4.6 Score=46.27 Aligned_cols=157 Identities=13% Similarity=0.127 Sum_probs=75.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004744 498 DGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRL 577 (732)
Q Consensus 498 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 577 (732)
.++++.|+.-+..+. ...|.-.++.--+.|.+++|+.++..=.+. --..|.+..+-+...+.+++|.-.
T Consensus 893 L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHH
Confidence 345555555554443 112233344445556666666555321111 112333333444455666666665
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004744 578 WYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSI--SYNTLINGFVREENMDKAFALVSKMENQG 655 (732)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~g 655 (732)
|+..-+. ..-+.+|..+|++.+|..+..++.. .-|.. +-..|+.-+...++.-+|-++..+...
T Consensus 962 Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-- 1027 (1265)
T KOG1920|consen 962 YERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-- 1027 (1265)
T ss_pred HHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc--
Confidence 5543221 1334556666777776666665543 11211 124455566666666666666665543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004744 656 LVPDVITYNVILTGFCRQGRMHDSELILWR 685 (732)
Q Consensus 656 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 685 (732)
.|. -.+..||+...|++|.++...
T Consensus 1028 -d~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1028 -DPE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred -CHH-----HHHHHHhhHhHHHHHHHHHHh
Confidence 221 122334455555555554443
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.64 Score=44.90 Aligned_cols=117 Identities=12% Similarity=-0.025 Sum_probs=74.5
Q ss_pred HcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhH
Q 004744 182 QARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRS---GIELNVYTLNIMVNALCKDHKIDS 258 (732)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 258 (732)
..|++.+|-..++++++.-|. |..+++..=.++.-.|+...-...+++++-. ++|-..++...+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456777777777777765333 6667777777777777777777777766532 333334444455555666777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004744 259 AKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNS 300 (732)
Q Consensus 259 A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 300 (732)
|++.-++..+.+. .|..+-.++.+.+--.|+..++.++..+
T Consensus 194 AEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 7777777666542 2666666666666667777777766554
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.99 E-value=1 Score=38.21 Aligned_cols=54 Identities=11% Similarity=0.117 Sum_probs=29.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 600 YCRSGDASKADEFLSKMVSEGV--DPDSISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
..+.|++++|++.|+.+...-. +-....--.|+.+|.+.|++++|...+++.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455666666666666655411 11223344455666666666666666666666
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.93 E-value=2.1 Score=37.00 Aligned_cols=41 Identities=7% Similarity=0.070 Sum_probs=18.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004744 561 LINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCR 602 (732)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 602 (732)
++..+.+.+........++.+...+ +.+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3334444444444555554444443 2344444444444443
No 262
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.87 E-value=2.3 Score=36.74 Aligned_cols=42 Identities=12% Similarity=-0.033 Sum_probs=18.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHH
Q 004744 175 LVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVK 217 (732)
Q Consensus 175 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 217 (732)
.++..+.+.+........++.+...+. .+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444444444444444432 234444444444443
No 263
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.84 E-value=3 Score=37.90 Aligned_cols=160 Identities=16% Similarity=0.063 Sum_probs=90.5
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HH
Q 004744 166 CGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVY--TL 243 (732)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~ 243 (732)
.|.-+.+||-|+--+...|+++.|.+.|+...+.++..+-...|.= -++--.|++.-|.+-+...-+.+ +.|++ .|
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg-i~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LW 172 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG-IALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLW 172 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc-eeeeecCchHhhHHHHHHHHhcC-CCChHHHHH
Confidence 4555788999998899999999999999999888766333333332 33445688888888777776654 33332 23
Q ss_pred HHHHHHHHhcCChhHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhCCCCC-------CHhhHH
Q 004744 244 NIMVNALCKDHKIDSAKMFL-CEMEQKGVYPDTVTYNTLINAYCR-EGFLEEAFQLMNSMSGKGLKP-------GVFTYN 314 (732)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~-~~~~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p-------~~~~~~ 314 (732)
--++ -..-+..+|..-+ ++..+. |..-|...|..|.- .=..+. +++++... ... -..||-
T Consensus 173 LYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~-a~~n~~~Ae~LTEtyF 241 (297)
T COG4785 173 LYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEET---LMERLKAD-ATDNTSLAEHLTETYF 241 (297)
T ss_pred HHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHH---HHHHHHhh-ccchHHHHHHHHHHHH
Confidence 2222 1234555665443 334433 55555554444332 112222 22332221 110 134566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 004744 315 SLINGLCKKGRCDRAKEVLDEMLQ 338 (732)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~ 338 (732)
.|.+-+...|+.++|..+|+-.+.
T Consensus 242 YL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 242 YLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHhccccHHHHHHHHHHHHH
Confidence 666666666777777777666554
No 264
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.76 E-value=0.71 Score=48.35 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=77.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 004744 180 YVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSA 259 (732)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (732)
..-.|+++++.+..+.-.-. +.....-.+.++.-+-+.|..+.|+++-.. +.+- .....+.|+++.|
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~r---FeLAl~lg~L~~A 337 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD---------PDHR---FELALQLGNLDIA 337 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHH---HHHHHHCT-HHHH
T ss_pred HHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHHH---hHHHHhcCCHHHH
Confidence 34456666665555411100 111244466667777777777777665332 1111 2334456777766
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004744 260 KMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQM 339 (732)
Q Consensus 260 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 339 (732)
.++.++. .+...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.....
T Consensus 338 ~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6544332 2556677777777777777777777765442 455556666666666666666555554
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHhHHHHHHHH
Q 004744 340 GLSPDTATYNTLLVESCRKENMSEAEEIFCE 370 (732)
Q Consensus 340 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (732)
| . ++....++.-.|+.++..+++.+
T Consensus 403 ~-~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 G-D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred c-C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 1 23333334444566555555543
No 265
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.76 E-value=0.032 Score=34.20 Aligned_cols=31 Identities=35% Similarity=0.531 Sum_probs=22.6
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 004744 683 LWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAF 715 (732)
Q Consensus 683 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 715 (732)
|+++++ +.| +...|..++..|...|++++|.
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 456666 667 4577888888888888887775
No 266
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.69 E-value=1.5 Score=36.34 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004744 662 TYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQRGF 726 (732)
Q Consensus 662 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 726 (732)
..+.-++.+..+|+-+.-.+++..+.+ .-+|++.....+..+|.+.|+..++.++++++-++|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455666677777777777777654 2455667777777778888888888887777777775
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.67 E-value=0.72 Score=48.34 Aligned_cols=153 Identities=19% Similarity=0.123 Sum_probs=73.8
Q ss_pred HcCCHHHHHHHHHH-HhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHH
Q 004744 287 REGFLEEAFQLMNS-MSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAE 365 (732)
Q Consensus 287 ~~g~~~~A~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 365 (732)
-.|+++++.++.+. -.-..+ ...-.+.++..+.+.|..+.|+++..+-. .-.+...+.|+++.|.
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIAL 338 (443)
T ss_dssp HTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHH
T ss_pred HcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHH
Confidence 34566665555541 111011 13335666666666666666666543321 1233445667777766
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004744 366 EIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKG 445 (732)
Q Consensus 366 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 445 (732)
++.++. .+...|..|.....+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+.....|
T Consensus 339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 654332 2556677777777777777777777766432 4445555666666655555555544432
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 446 CVMDVVTYNTILNGLCRAKMLTEADDLFN 474 (732)
Q Consensus 446 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 474 (732)
- +|....++.-.|+.++..+++.
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHH
Confidence 1 2333344444455555555443
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.62 E-value=3 Score=43.05 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=24.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004744 561 LINGYCSMGHVTEAFRLWYEMVGKGIK-PTLVSCNTIIKGYCRSGDASKADEFLSKM 616 (732)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (732)
+..+.-+.|+.+||++.|++|.+.... .+..+...++.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444445555555555555443111 11223334444555555555555554443
No 269
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.60 E-value=9.4 Score=42.54 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=27.5
Q ss_pred hcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 567 SMGHVTEAFRLWYEMVGK----GIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 618 (732)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (732)
..|++++|.++-+..... -..+....+..+..+..-.|++++|..+..+..+
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 345666666666555543 1122334444555555556666666666555544
No 270
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.47 E-value=10 Score=42.31 Aligned_cols=191 Identities=12% Similarity=0.094 Sum_probs=109.6
Q ss_pred HHHHHHHhHHhh-CCCCCCChHHHHHHHHHHH-hCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHH
Q 004744 99 VGQRFIDFIALN-FPNVKHSSMSLSAMIHFLV-RGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLV 176 (732)
Q Consensus 99 ~a~~~f~~~~~~-~~~~~~~~~~~~~l~~~l~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 176 (732)
.|++.++-+... .+.......++-.++.+|. ...++++|...+.+.+..... ..+.+ .--.....+
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d----------~k~~~~~ll 106 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTD----------LKFRCQFLL 106 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHH----------HHHHHHHHH
Confidence 355666554421 1111223456667788887 678999999999988643221 11100 001233456
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC----CCccCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHH
Q 004744 177 IRTYVQARKLREGSEVFRLLRNK----GICFSINACNSL-LGGLVKIGWVDLAREVYAEVVRSG---IELNVYTLNIMVN 248 (732)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~ 248 (732)
++.|.+.+... |....++.++. +..+-...+..+ +..+...+++..|.+.++.+...- ..|-..++-.++.
T Consensus 107 ~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 107 ARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE 185 (608)
T ss_pred HHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 77777777766 88888887653 112223333333 233334479999999998876532 2444555555555
Q ss_pred HHH--hcCChhHHHHHHHHHHhCCC---------CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHh
Q 004744 249 ALC--KDHKIDSAKMFLCEMEQKGV---------YPDTVTYNTLINAYC--REGFLEEAFQLMNSMS 302 (732)
Q Consensus 249 ~~~--~~g~~~~A~~~~~~~~~~g~---------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 302 (732)
+.. +.+..+++.+.++++..... .|-..+|..+++.++ ..|+++.+...++++.
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 544 45666777777777643211 234556777766544 4677777776666553
No 271
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.99 E-value=0.6 Score=45.12 Aligned_cols=116 Identities=13% Similarity=-0.059 Sum_probs=74.2
Q ss_pred HHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHH
Q 004744 145 VRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLA 224 (732)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 224 (732)
++....+...+...|+..-+ -.-.-++-|.++|++++|++.|.......+. |.+++..-..+|.+..++..|
T Consensus 79 I~~~dL~vd~I~~~LL~~~S-------EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~A 150 (536)
T KOG4648|consen 79 IEKQDLPVDPIAQQLLKKAS-------EIKERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQA 150 (536)
T ss_pred hhhccCCccHHHHHHHHhhH-------HHHHhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHH
Confidence 33334444555555544111 1233466788999999999999887776443 788888888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004744 225 REVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 269 (732)
..-...++..+ ..-+.+|+.-+.+-...|+..+|.+-++..+..
T Consensus 151 E~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 151 EEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 77777766543 222234444444444556677777777776665
No 272
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.93 E-value=1 Score=37.84 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 004744 621 VDPDSISYNTLINGFVREENMDKAFALVSKMEN-QGLVPDVITYNVILT 668 (732)
Q Consensus 621 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~ 668 (732)
..|+..+..+++.+|+..|++..|+++++...+ .+++.+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344445555555555555555555555444433 233334444444443
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.70 E-value=4.5 Score=35.42 Aligned_cols=128 Identities=10% Similarity=0.110 Sum_probs=69.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHHhcCCH
Q 004744 566 CSMGHVTEAFRLWYEMVGKGIKPTL-VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSI-SYNTL--INGFVREENM 641 (732)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~ 641 (732)
++.++.++|+.-|.++.+.|...=+ .............|+...|...|+++-.....|... -...| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4556666677777666665533211 112223334556677777777777765543333322 11111 2334566777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004744 642 DKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP 693 (732)
Q Consensus 642 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 693 (732)
++.....+-+...+.+--...-..|.-+-.+.|++.+|.+.|..+.+....|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 7776666665543322222333456666667777777777777776643444
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.63 E-value=4.6 Score=35.34 Aligned_cols=124 Identities=15% Similarity=0.037 Sum_probs=75.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHH--HHHHHHhcCC
Q 004744 180 YVQARKLREGSEVFRLLRNKGICFSI-NACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVY-TLNI--MVNALCKDHK 255 (732)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~g~ 255 (732)
+.+.++.++|+.-|..+.+.|...-+ -....+.....+.|+...|...|+++-+....|... -... -.-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 46778889999999999887655222 223344456677888888888888876643333322 1111 1223445667
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004744 256 IDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSG 303 (732)
Q Consensus 256 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 303 (732)
+++...-.+-+...+-.--...-.+|.-+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 776666666555444333344455566666677777777777776655
No 275
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.62 E-value=8 Score=38.07 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 487 TFTTLIHGHCKDGNM---NKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISR 549 (732)
Q Consensus 487 ~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 549 (732)
++..++.+|...+.. ++|..+++.+... ....+..+..-++.+.+.++.+.+.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 445566666665543 3445555555333 2222344444455555567777777777777765
No 276
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.36 E-value=1 Score=42.43 Aligned_cols=104 Identities=20% Similarity=0.212 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004744 587 KPTLVSCNTIIKGYCR-----SGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVI 661 (732)
Q Consensus 587 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 661 (732)
+.|..+|...+..+.. .+.++--...++.|.+.|+.-|..+|+.|++.+-+.. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 4456666666655543 2445555666677777777777777777776654322 112111
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004744 662 TYNVILTGFCRQ-GRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNN 710 (732)
Q Consensus 662 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 710 (732)
+. ..+.+- ..-+-++.++++|...|+-||.++-..|++++.+.|-
T Consensus 128 -fQ---~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 -FQ---KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred -HH---HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11 111111 1224467777777777788887777777777765554
No 277
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.10 E-value=4.5 Score=33.64 Aligned_cols=140 Identities=14% Similarity=0.177 Sum_probs=68.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 004744 180 YVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSA 259 (732)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (732)
..-.|.+++..++..+..... +..-+|.++.-....-+-+-..++++.+-+. -|.. .+|++...
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHH
Confidence 344577777888888777642 5556666666555555555555555544221 1111 12333333
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004744 260 KMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQM 339 (732)
Q Consensus 260 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 339 (732)
...+-.+-. +..-....+....+.|+-+.-.++++++.. +-.+++.....+..+|.+.|+..++.+++.+.-+.
T Consensus 76 i~C~~~~n~-----~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKRNK-----LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 322222111 223334445556666776666666666653 22446666666667777777777777777766666
Q ss_pred CC
Q 004744 340 GL 341 (732)
Q Consensus 340 g~ 341 (732)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 53
No 278
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.06 E-value=0.22 Score=30.37 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 662 TYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 662 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
+|..++.+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344455555555555555555555554
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.03 E-value=0.21 Score=31.03 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 697 TYTTLINGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 697 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 722 (732)
+|..|+.+|.+.|++++|.+++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888888755
No 280
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.00 E-value=10 Score=37.49 Aligned_cols=129 Identities=19% Similarity=0.341 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh--c----CChhHHHHHHHHHHHCCC---CCCHHhHHHHHHHHHcCCC-
Q 004744 291 LEEAFQLMNSMSGKGLKPGVFTYNSLINGLCK--K----GRCDRAKEVLDEMLQMGL---SPDTATYNTLLVESCRKEN- 360 (732)
Q Consensus 291 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~- 360 (732)
+++.+.+++.|.+.|+..+..+|.+..-.... . -...+|..+|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455666777777777666555443322222 1 124467777777776532 2344455555433 2222
Q ss_pred ---HhHHHHHHHHHHhCCCCCC-H-hHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004744 361 ---MSEAEEIFCEMSRRGVAPD-I-VSFSTLIGIFSRNGQ--LDRALMYFREMKSAGLVPDNVLYTII 421 (732)
Q Consensus 361 ---~~~A~~~~~~~~~~g~~~~-~-~~~~~l~~~~~~~g~--~~~A~~l~~~~~~~~~~~~~~~~~~l 421 (732)
.+.+..+|+.+.+.|+..+ . .....++........ ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2445566666666665442 2 222222222221111 33566666667766666655555444
No 281
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.91 E-value=6.7 Score=35.23 Aligned_cols=53 Identities=9% Similarity=0.144 Sum_probs=21.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 634 GFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
.....|.+|+|+..++...+.+. .......-++++...|+-++|+.-|++.++
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 33444444444444444433211 111222233444444444444444444444
No 282
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.63 E-value=4.6 Score=34.43 Aligned_cols=57 Identities=9% Similarity=-0.070 Sum_probs=27.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004744 213 GGLVKIGWVDLAREVYAEVVRSGIEL---NVYTLNIMVNALCKDHKIDSAKMFLCEMEQKG 270 (732)
Q Consensus 213 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 270 (732)
....+.|++++|.+.|+.+... .|. ...+.-.++.+|.+.+++++|...+++.++..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3334455555555555554432 121 22233345555555555555555555555553
No 283
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.56 E-value=12 Score=37.07 Aligned_cols=127 Identities=11% Similarity=0.150 Sum_probs=53.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCC----
Q 004744 539 ANKLWADMISRKISPNYISYGILINGYCS--MG----HVTEAFRLWYEMVGKGI---KPTLVSCNTIIKGYCRSGD---- 605 (732)
Q Consensus 539 A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---- 605 (732)
...+++.+.+.|+..+..+|-+....... .. ....|..+|+.|.+... .++...+..++.. ..++
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l 158 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHH
Confidence 44555555666555555444332222111 11 23345566666655421 1222333333322 1222
Q ss_pred HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004744 606 ASKADEFLSKMVSEGVDPDS--ISYNTLINGFVREEN--MDKAFALVSKMENQGLVPDVITYNVIL 667 (732)
Q Consensus 606 ~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~l~ 667 (732)
.+..+.+|+.+.+.|+..+. .....++..+..... ...+.++++.+.+.|+++....|..++
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 24455555555554444332 122222222111111 334555566666666555555554443
No 284
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.33 E-value=1.6 Score=42.02 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 004744 627 SYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIE-----KGLNPDRSTYTT 700 (732)
Q Consensus 627 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~ 700 (732)
++..++..+...|+++.+.+.++++... .| +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4455666666677777777777777763 34 556777777777777777777777776653 466676665555
Q ss_pred HHHH
Q 004744 701 LING 704 (732)
Q Consensus 701 l~~~ 704 (732)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.25 E-value=2 Score=38.78 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 627 SYNTLINGFVREENMDKAFALVSKMENQGLVPDV--ITYNVILTGFCRQGRMHDSELILWRMI 687 (732)
Q Consensus 627 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 687 (732)
.+..+++.|++.|+.++|++.+.++.+....+.. ..+..++......|++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444555555555555555555555553323322 234445555555555555555555544
No 286
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.21 E-value=15 Score=37.57 Aligned_cols=65 Identities=9% Similarity=-0.044 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 554 NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKP---TLVSCNTIIKGYCRSGDASKADEFLSKMVS 618 (732)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (732)
...+|..++..+.+.|.++.|...+..+...+... .+......++..-..|+..+|+..++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777777778888888888777776643111 334444455666677788888887777776
No 287
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.13 E-value=0.34 Score=29.41 Aligned_cols=26 Identities=8% Similarity=0.204 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 663 YNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 663 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
|..++..+...|++++|++.|+++++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 288
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.09 E-value=13 Score=36.56 Aligned_cols=163 Identities=15% Similarity=0.133 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004744 557 SYGILINGYCSMGHVT---EAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLIN 633 (732)
Q Consensus 557 ~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 633 (732)
+...++.+|...+..+ +|..+.+.+... .+..+.++..-++.+.+.++.+++.+.+.+|+..- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 5566777887776654 455566666544 23334555555666667888889999999988752 212233333333
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHH---HHHHhcCC------HHHHHHHHHHHHH---cCCCCCH-
Q 004744 634 GF---VREENMDKAFALVSKMENQGLVPDVITYN--VIL---TGFCRQGR------MHDSELILWRMIE---KGLNPDR- 695 (732)
Q Consensus 634 ~~---~~~g~~~~A~~~~~~~~~~g~~p~~~~~~--~l~---~~~~~~g~------~~~A~~~~~~~~~---~g~~p~~- 695 (732)
.+ ... ....|...+..+...-+.|....|. .++ ......++ ++....++....+ ..+.+..
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 333 3355666666665543455442121 111 11112222 4444444553332 1222222
Q ss_pred HHHHHH----HHHHHhcCCHHHHHHHHHHHH
Q 004744 696 STYTTL----INGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 696 ~~~~~l----~~~~~~~g~~~~A~~~~~~m~ 722 (732)
.+..+| +..+.+.+++++|.++++-.+
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 222222 345668899999999998654
No 289
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.89 E-value=24 Score=39.22 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-------hhHHHHHHHHHHHC
Q 004744 274 DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGR-------CDRAKEVLDEMLQM 339 (732)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~ 339 (732)
+...| ++|--+.++|++++|.++.++.... .......+...+..|....+ -+....-|++..+.
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 34455 3566677888888888888554432 33355566677777765422 23455555555544
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.88 E-value=0.26 Score=30.17 Aligned_cols=31 Identities=16% Similarity=-0.007 Sum_probs=15.3
Q ss_pred HHHHHCCCccCHHHHHHHHHHHHHcCChHHHH
Q 004744 194 RLLRNKGICFSINACNSLLGGLVKIGWVDLAR 225 (732)
Q Consensus 194 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 225 (732)
+++++..|. |..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 344444444 4555555555555555555543
No 291
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.84 E-value=23 Score=38.87 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCC
Q 004744 465 MLTEADDLFNEMLERGVFPDFYTFTTLIHGHC----KDGNMNKALNLFDIMTQKS 515 (732)
Q Consensus 465 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~ 515 (732)
+...|.++|....+.|.. ..+..+..+|. -..+.+.|..++++..+.|
T Consensus 343 d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 455666666666655532 22222222221 1235566666666666554
No 292
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.73 E-value=1.3 Score=41.72 Aligned_cols=103 Identities=17% Similarity=0.272 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 004744 274 DTVTYNTLINAYCR-----EGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATY 348 (732)
Q Consensus 274 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 348 (732)
|-.+|-+.+..+.. .+.++-....++.|.+.|+..|..+|+.|+..+-+..- .|.. .+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-vf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-VF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-HH
Confidence 55555555555443 24455555566667777777777777766665432211 1111 11
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCC
Q 004744 349 NTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQ 395 (732)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 395 (732)
......|- .+-+-+++++++|...|+.||-.+-..++.++.+.+-
T Consensus 129 Q~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111111 1223456777777777777777777777777766654
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.66 E-value=0.41 Score=29.76 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 662 TYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 662 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
+|..|+..|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888654
No 294
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.64 E-value=26 Score=39.02 Aligned_cols=63 Identities=17% Similarity=0.127 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCC-------HhHHHHHHHHHHhCCC
Q 004744 313 YNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKEN-------MSEAEEIFCEMSRRGV 376 (732)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~g~ 376 (732)
.-.+|-.|.+.|++++|.++..+..+. .......+...+..|....+ -+....-|....+...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 345677788999999999999555432 23444556666777765422 2344555666555433
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.59 E-value=2.1 Score=41.34 Aligned_cols=74 Identities=12% Similarity=0.129 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 004744 557 SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS-----EGVDPDSISYNTL 631 (732)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 631 (732)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44555666666666666666666666653 55666666666666666666666666666554 2555555544433
No 296
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.47 E-value=25 Score=38.57 Aligned_cols=178 Identities=17% Similarity=0.168 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHH----H-HHHcCCHHHHHHHHHHHhh-------CCCCCCHhhHHHHHHHHHhc
Q 004744 256 IDSAKMFLCEMEQKGVYPDTVTYNTLIN----A-YCREGFLEEAFQLMNSMSG-------KGLKPGVFTYNSLINGLCKK 323 (732)
Q Consensus 256 ~~~A~~~~~~~~~~g~~p~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~ 323 (732)
..+|.++++...+.| +...-..++. + +....+.+.|+..|..+.+ .| +......+...|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 356777777777765 3333222222 2 4455678888888888766 44 333555666666654
Q ss_pred C-----ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc-CCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHH----hC
Q 004744 324 G-----RCDRAKEVLDEMLQMGLSPDTATYNTLLVESCR-KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFS----RN 393 (732)
Q Consensus 324 g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~----~~ 393 (732)
. +.+.|..++.+..+.| .|+....-..+..... ..+...|.++|....+.|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 4566888887777776 3444433322222222 23567788888887777642 22222222222 23
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004744 394 GQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKG 445 (732)
Q Consensus 394 g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 445 (732)
.+.+.|..++.+..+.|.. ...--...+..+.. ++.+.+.-.+..+.+.|
T Consensus 378 r~~~~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 4567777777777776622 21111122222333 55555555555554443
No 297
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.09 E-value=3.4 Score=36.55 Aligned_cols=41 Identities=12% Similarity=0.270 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 676 MHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQR 724 (732)
Q Consensus 676 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 724 (732)
+++|...|+++.+ .+|+...|..-+.... +|-++..++.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 4445555555555 6666666665555442 344444444443
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.06 E-value=0.37 Score=29.25 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004744 696 STYTTLINGHVSQNNLKEAFRFHDEMLQRGFVPD 729 (732)
Q Consensus 696 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 729 (732)
..|..++.++...|++++|.+.+++.++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 4688899999999999999999999984 4454
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.99 E-value=3.1 Score=37.52 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH----H
Q 004744 591 VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD--SISYNTLINGFVREENMDKAFALVSKMENQ---GLVPDV----I 661 (732)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~~p~~----~ 661 (732)
..+..+...|++.|+.++|.+.|.++.+....+. ...+-.+|......+++..+...+.++... |-+++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3455666677777777777777777766533333 334555666667777777777776666542 111111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 662 TYNVILTGFCRQGRMHDSELILWRMI 687 (732)
Q Consensus 662 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 687 (732)
+|..+ .+...|++.+|-+.|-+..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 12111 2335688888888776654
No 300
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=90.96 E-value=22 Score=36.99 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=62.2
Q ss_pred CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004744 587 KPTLVSC-NTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFV--REENMDKAFALVSKMENQGLVPDVITY 663 (732)
Q Consensus 587 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~g~~p~~~~~ 663 (732)
.++..++ +.+++.+.+.|-.++|.+.+..+... .+|+...|..+|..-. ..-++.-+.++++.|... +-.|+..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHH
Confidence 3444433 45566666777777777777777664 3455666666654321 122366777778777653 22566677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 664 NVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 664 ~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
...+.-=...|..+.+-.++.++.+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 6666555577888877777777665
No 301
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.95 E-value=31 Score=38.72 Aligned_cols=226 Identities=15% Similarity=0.092 Sum_probs=120.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 004744 460 LCRAKMLTEADDLFNEMLERGVFPDF-------YTFTTLIH-GHCKDGNMNKALNLFDIMTQK----SIKPDIVTYNTLI 527 (732)
Q Consensus 460 ~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li 527 (732)
.....++++|..+..++...-..|+. ..++.+-. .....|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 44567888888888877654222221 12333322 234578899999888877664 1223455666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHH--HHHHHhcCC--HHHHHHHHHHHHhC---CCC---CCHHHHH
Q 004744 528 DGFCKVGEMEKANKLWADMISRKISPNYIS---YGIL--INGYCSMGH--VTEAFRLWYEMVGK---GIK---PTLVSCN 594 (732)
Q Consensus 528 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l--i~~~~~~g~--~~~A~~~~~~~~~~---~~~---~~~~~~~ 594 (732)
.+..-.|++++|..+..+..+..-.-+... |..+ ...+...|. ..+....|...... ..+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777788999999888877665422223332 2222 233455663 23333333333221 111 1223445
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHH
Q 004744 595 TIIKGYCRS-GDASKADEFLSKMVSEGVDPDSISY--NTLINGFVREENMDKAFALVSKMENQGLVP----DVITYNVIL 667 (732)
Q Consensus 595 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~ 667 (732)
.++.++.+. +...++..-++--......|-...+ ..|+......|++++|...++++......+ +-..-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 555555541 2222233333222222222222222 266777888999999999999887733222 222222222
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 004744 668 TG--FCRQGRMHDSELILWR 685 (732)
Q Consensus 668 ~~--~~~~g~~~~A~~~~~~ 685 (732)
.. -...|+..+|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2356888888777666
No 302
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.77 E-value=0.76 Score=44.47 Aligned_cols=94 Identities=12% Similarity=0.104 Sum_probs=66.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004744 597 IKGYCRSGDASKADEFLSKMVSEGVDP-DSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGR 675 (732)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 675 (732)
..-|.+.|.+++|+..|.+.+.. .| +.+++..-..+|.+..++..|..--..++..+ ..-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 45688889999999999887763 45 78888888888998888888877777666521 1112245555555555677
Q ss_pred HHHHHHHHHHHHHcCCCCCH
Q 004744 676 MHDSELILWRMIEKGLNPDR 695 (732)
Q Consensus 676 ~~~A~~~~~~~~~~g~~p~~ 695 (732)
..+|.+-++..++ ++|+.
T Consensus 181 ~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHHHHhHHHHHh--hCccc
Confidence 8888888888877 77864
No 303
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.66 E-value=11 Score=32.93 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=28.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004744 250 LCKDHKIDSAKMFLCEMEQKGVYPDTVTY-NTLINAYCREGFLEEAFQLMNSMSGK 304 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 304 (732)
-.+.++.+++..+++.+.-. .|..... ..-...+.+.|++.+|..+|+++.+.
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34455666666666666655 2332221 11223445667777777777776554
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.61 E-value=0.61 Score=28.35 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004744 171 LIFDLVIRTYVQARKLREGSEVFRLLRNK 199 (732)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 199 (732)
.+|..++..|...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35666677777777777777777776665
No 305
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.58 E-value=57 Score=41.12 Aligned_cols=314 Identities=11% Similarity=0.056 Sum_probs=167.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 004744 385 TLIGIFSRNGQLDRALMYFREM----KSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGL 460 (732)
Q Consensus 385 ~l~~~~~~~g~~~~A~~l~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 460 (732)
.+..+-.+.+.+..|...++.- ++. .....-|..+...|...++++...-+...... +...+. -|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHH
Confidence 4455666788888888888873 211 11122344444588888888887766653111 222222 33446
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHH
Q 004744 461 CRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVT-YNTLIDGFCKVGEMEKA 539 (732)
Q Consensus 461 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A 539 (732)
...|++..|...|+.+.+.+.. ...+++.++......|.++..+...+-..... .+.... ++.-+.+-.+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 7789999999999999887543 46677777777777888888877666554432 222222 23334555788888877
Q ss_pred HHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCC--HHHHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCCH
Q 004744 540 NKLWADMISRKISPNYISYGI--LINGYCSMGH--VTEAFRLWYEMVGK--------GIKPT-LVSCNTIIKGYCRSGDA 606 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~--~~~A~~~~~~~~~~--------~~~~~-~~~~~~l~~~~~~~g~~ 606 (732)
..... +. +..+|.. ++..+.+..+ .-.-.+..+-+.+. +..-+ ...|..+++...-.
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~--- 1607 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL--- 1607 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH---
Confidence 76654 21 2222322 2222222211 11111122222211 00000 12233333222111
Q ss_pred HHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCC-----HHHHHHHHHHHHhcC
Q 004744 607 SKADEFLSKMVSEGVDPD------SISYNTLINGFVREENMDKAFALVSK-MENQGLVPD-----VITYNVILTGFCRQG 674 (732)
Q Consensus 607 ~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~g~~p~-----~~~~~~l~~~~~~~g 674 (732)
+-....+... +..++ ...|-.-+..-....+..+-+--+++ +......|+ ..+|...++.....|
T Consensus 1608 -el~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG 1684 (2382)
T KOG0890|consen 1608 -ELENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG 1684 (2382)
T ss_pred -HHHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc
Confidence 1111111111 22222 11222222111111112222222222 222112222 358888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 675 RMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQR 724 (732)
Q Consensus 675 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 724 (732)
.++.|...+-++.+.+ -+..+...+..+.+.|+...|..++++-++.
T Consensus 1685 ~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1685 HLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred cHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999999988888754 2356777888899999999999999998864
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.48 E-value=12 Score=33.12 Aligned_cols=101 Identities=21% Similarity=0.315 Sum_probs=44.8
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCC
Q 004744 296 QLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRG 375 (732)
Q Consensus 296 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 375 (732)
++++.+...+++|+...+..++..+.+.|++..-.+ +++.++-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 344444555556666666666666666665443333 233333444433332222221 1222233333333322
Q ss_pred CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004744 376 VAPDIVSFSTLIGIFSRNGQLDRALMYFREM 406 (732)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~ 406 (732)
=...+..++..+...|++-+|.++.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0112344555556666666666655543
No 307
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.39 E-value=5.1 Score=35.99 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=71.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 004744 597 IKGYCRSGDASKADEFLSKMVSEGVDPD----SISYNTLINGFVREENMDKAFALVSKMENQGLVPDV-ITYNVILTGFC 671 (732)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 671 (732)
..-+.+.|++++|..-|..++..-.... .+.|..-..++.+.+.++.|++--.+.++ +.|.. .....-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHH
Confidence 4457788999999999999988532111 34566666778899999999999999988 44532 23344456788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 672 RQGRMHDSELILWRMIEKGLNPDR 695 (732)
Q Consensus 672 ~~g~~~~A~~~~~~~~~~g~~p~~ 695 (732)
+..++++|+.-|+++.+ ..|..
T Consensus 180 k~ek~eealeDyKki~E--~dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILE--SDPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHH--hCcch
Confidence 88999999999999998 77754
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.90 E-value=3.9 Score=43.07 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=22.3
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004744 287 REGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEML 337 (732)
Q Consensus 287 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 337 (732)
+.|+++.|.++..+.. +..-|..|..+....|++..|.+.|.+..
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 4455555555444332 33445555555555555555555554443
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.73 E-value=16 Score=31.99 Aligned_cols=52 Identities=15% Similarity=-0.062 Sum_probs=22.8
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004744 217 KIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 217 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 269 (732)
+.++.+++..++..+.-.. |-....-..-...+.+.|++.+|+.+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3344555555555443321 111111112233345556666666666665544
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.62 E-value=0.033 Score=48.53 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=21.8
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004744 214 GLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLC 264 (732)
Q Consensus 214 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (732)
.+.+.+..+....+++.+...+...+....+.++..|++.++.++...+++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 333344444444444444443333344444444555554444444444443
No 311
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.40 E-value=21 Score=33.14 Aligned_cols=22 Identities=9% Similarity=0.197 Sum_probs=13.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHCC
Q 004744 389 IFSRNGQLDRALMYFREMKSAG 410 (732)
Q Consensus 389 ~~~~~g~~~~A~~l~~~~~~~~ 410 (732)
.-...+++.+|+++|+++....
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3345566666777776665543
No 312
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.32 E-value=48 Score=37.08 Aligned_cols=450 Identities=11% Similarity=0.014 Sum_probs=233.0
Q ss_pred ChHHHHHHHHHhccCCcchhhhhccC-----CChHHHHHHHHhhcc--ChhHHHHHHHhHHhhCCCCCCChHHHHHHHHH
Q 004744 55 DSLLVEKILLNLKQGNVNSLRSYQFR-----LNSVIIVEVLYRLRD--NLQVGQRFIDFIALNFPNVKHSSMSLSAMIHF 127 (732)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~l~~~~~~-----l~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~ 127 (732)
+.....++.+.++++++....++... +.+..-...|..-.+ ++.....|. ...|+..-....-..-+..
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl----~~~~~~P~~~~Lr~~~l~~ 108 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFI----RANPTLPPARSLQSRFVNE 108 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHH----HHCCCCchHHHHHHHHHHH
Confidence 35567778889999988665554333 333333333322211 223222222 3344432222222233333
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHH
Q 004744 128 LVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINA 207 (732)
Q Consensus 128 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 207 (732)
+.+.+...+-.. .+...+.+...-.....+....|+.++|....+.+-..|.. ....
T Consensus 109 La~~~~w~~~~~----------------------~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~ 165 (644)
T PRK11619 109 LARREDWRGLLA----------------------FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNA 165 (644)
T ss_pred HHHccCHHHHHH----------------------hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChH
Confidence 444444332222 12233456666777888889999998898888888777654 6788
Q ss_pred HHHHHHHHHHcCChHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------------CChhHHHHHHHHHHhCCCCC
Q 004744 208 CNSLLGGLVKIGWVDL--AREVYAEVVRSGIELNVYTLNIMVNALCKD------------HKIDSAKMFLCEMEQKGVYP 273 (732)
Q Consensus 208 ~~~ll~~~~~~g~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~~~~g~~p 273 (732)
|+.++..+.+.|.... .++-++.+...| +...-..++..+... .+...+..++.. +.|
T Consensus 166 cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~ 237 (644)
T PRK11619 166 CDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGP 237 (644)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCC
Confidence 9999999987776443 333344444433 222222222221000 111111111111 112
Q ss_pred CHHHHHHHHHHHH--HcCCHHHHHHHHHHHhhCC-CCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 004744 274 DTVTYNTLINAYC--REGFLEEAFQLMNSMSGKG-LKPG--VFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATY 348 (732)
Q Consensus 274 ~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 348 (732)
+...-..++.++. ...+.+.|..++....... +.+. ...+..+.......+...+|...+....... .+....
T Consensus 238 ~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~ 315 (644)
T PRK11619 238 TDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLL 315 (644)
T ss_pred ChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHH
Confidence 2222222222222 3456688999888764432 2222 2234444444444433567777666654332 233444
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004744 349 NTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRN 428 (732)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 428 (732)
..-+......++++.+...+..|....- -...-..=+..++...|+.++|...|+.+... .+ -|..|.. .+.
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~--fYG~LAa--~~L 387 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG--FYPMVAA--QRL 387 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--cHHHHHH--HHc
Confidence 4445555688899998888888755321 13333344666667789999999999987431 12 2322221 122
Q ss_pred CCHHHH-HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004744 429 GFVLEA-LKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNL 507 (732)
Q Consensus 429 g~~~~A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (732)
|..-.- ...... ....+..++ --.-+..+...|....|...+..+... .+......+.....+.|.++.++..
T Consensus 388 g~~~~~~~~~~~~-~~~~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 388 GEEYPLKIDKAPK-PDSALTQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred CCCCCCCCCCCCc-hhhhhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 221000 000000 000000011 122344567789999999988888774 2445556666666778888888776
Q ss_pred HHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004744 508 FDIMTQK-----SIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISY 558 (732)
Q Consensus 508 ~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 558 (732)
....... .++ ..|...+..+.+.-.++.++-.---..+.++.|+..+.
T Consensus 462 ~~~~~~~~~~~~rfp---~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S~ 514 (644)
T PRK11619 462 TIAGKLWDHLEERFP---LAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARSP 514 (644)
T ss_pred HhhchhHHHHHHhCC---cchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCccC
Confidence 6543221 111 24666777777766777766544444566777776553
No 313
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.23 E-value=13 Score=33.57 Aligned_cols=98 Identities=13% Similarity=0.058 Sum_probs=69.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCcc
Q 004744 124 MIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICF 203 (732)
Q Consensus 124 l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 203 (732)
=..-+.++|.+.+|.+-|.+++...+..+... ..+.|..-..++.+.+.++.|+.--.+.++.++.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~-------------rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt- 166 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEE-------------RSILYSNRAAALIKLRKWESAIEDCSKAIELNPT- 166 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHH-------------HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-
Confidence 34456788999999999999885433222211 2345556667788899999999999888888765
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 004744 204 SINACNSLLGGLVKIGWVDLAREVYAEVVRSG 235 (732)
Q Consensus 204 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 235 (732)
...+...-..+|-+...+++|++=|..+....
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 44444455567778888888888888887753
No 314
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.79 E-value=0.82 Score=27.72 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 662 TYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 662 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
+|..+...|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555555
No 315
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.55 E-value=39 Score=35.26 Aligned_cols=99 Identities=7% Similarity=0.048 Sum_probs=65.4
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH-cCCCCCHHH
Q 004744 622 DPDSISY-NTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFC--RQGRMHDSELILWRMIE-KGLNPDRST 697 (732)
Q Consensus 622 ~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~-~g~~p~~~~ 697 (732)
.|+..++ +.++.-+.+.|-..+|...+..+... .+|....|..++..=. ..-+..-+..+++.|.. .| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 3555544 45677778888889999999988874 2345666766664321 12237778888888876 66 45556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 698 YTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 698 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
|.....-=...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 66655555577887777777666543
No 316
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.22 E-value=21 Score=31.67 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=49.7
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004744 192 VFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGV 271 (732)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 271 (732)
..+.+.+.+..|+...+..++..+.+.|++....++. ..++-+|.......+-.+. +....+.++--+|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 3444455666666667777777777777655443333 3333333333322221111 2233444444444433
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004744 272 YPDTVTYNTLINAYCREGFLEEAFQLMNSM 301 (732)
Q Consensus 272 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 301 (732)
=...+..++..+...|++-+|+++.+..
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 1113445556666667777776666654
No 317
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.95 E-value=43 Score=35.06 Aligned_cols=100 Identities=12% Similarity=-0.022 Sum_probs=54.1
Q ss_pred CCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 004744 164 SPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTL 243 (732)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 243 (732)
++.+-|....-+++..++++.++.-...+-.+|+..| -+--.+..++..|..+ ..+.-..+++++++..+ .|+..-
T Consensus 60 s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ 135 (711)
T COG1747 60 SKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIG 135 (711)
T ss_pred hhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHH
Confidence 4444455555566666666666666666666666654 2445566666666666 44555566666655432 222222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 004744 244 NIMVNALCKDHKIDSAKMFLCEMEQ 268 (732)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~~~~ 268 (732)
..|+.-|- .++.+.+..+|.++..
T Consensus 136 ReLa~~yE-kik~sk~a~~f~Ka~y 159 (711)
T COG1747 136 RELADKYE-KIKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHHHHH-HhchhhHHHHHHHHHH
Confidence 33333333 3555566555555543
No 318
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.85 E-value=29 Score=32.92 Aligned_cols=208 Identities=15% Similarity=0.129 Sum_probs=127.1
Q ss_pred CCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 004744 445 GCVMDVVTYNTILNG-LCRAKMLTEADDLFNEMLERGVFPD---FYTFTTLIHGHCKDGNMNKALNLFDIMTQK-----S 515 (732)
Q Consensus 445 ~~~~~~~~~~~li~~-~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~ 515 (732)
+..||+..-|..-.. -.+..++++|+.-|.+.++....-- ..+...++..+.+.|++++-...|.+++.. .
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 344555544433221 1244578999999999887532222 334556788889999999999999888642 0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----
Q 004744 516 IKPDIVTYNTLIDGFCKVGEMEKANKLWADMISR-KISPNYI----SYGILINGYCSMGHVTEAFRLWYEMVGKGI---- 586 (732)
Q Consensus 516 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---- 586 (732)
-..+....+++++......+.+--.++|+.-++. .-..+.. |-+-|...|...|.+.+..++++++....-
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1124456677888777777777777776654432 0011222 234567778888888888888888765421
Q ss_pred CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHH
Q 004744 587 KPT-------LVSCNTIIKGYCRSGDASKADEFLSKMVSE-GVDPDSISYNTLI----NGFVREENMDKAFALVSKME 652 (732)
Q Consensus 587 ~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~ 652 (732)
..| ...|..-+..|....+-.+...+|++.+.. ..-|.+.....+- .+..+.|++++|-.-|=++.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 112 234556667777788888888888877653 2234544433322 33457788888865444433
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.83 E-value=55 Score=36.22 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 004744 242 TLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLE 292 (732)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 292 (732)
.+...++.+.-.|++++|-...-.|... +..-|.--+..+...++..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccc
Confidence 3444555555556666666555555543 4455555555555544443
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.70 E-value=56 Score=36.17 Aligned_cols=102 Identities=17% Similarity=0.069 Sum_probs=60.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 004744 247 VNALCKDHKIDSAKMFLCEMEQKGVYP---DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKK 323 (732)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 323 (732)
++-+.+.+.+++|.+..+..... .| -...+..+|..+.-.|++++|-...-.|... +..-|.--+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 34456667777777766654433 23 2345777888888888888888888888765 556666666655555
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 004744 324 GRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCR 357 (732)
Q Consensus 324 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 357 (732)
++......++ .......+...|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 5544333222 111111234456666655554
No 321
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.52 E-value=60 Score=36.28 Aligned_cols=163 Identities=12% Similarity=0.137 Sum_probs=68.4
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHhhCC----CCCCHhh
Q 004744 243 LNIMVNALC-KDHKIDSAKMFLCEMEQKGVYPDTV-----TYNTLINAYCREGFLEEAFQLMNSMSGKG----LKPGVFT 312 (732)
Q Consensus 243 ~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~ 312 (732)
+-.++..+. ...++++|+..+++.....-.++.. +...++..+.+.+... |...+++.++.- ..+-...
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 333444444 4455666666665543322111111 1223444555554444 666666554321 0011111
Q ss_pred HHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHhHHHHHHHH--HcCCCHhHHHHHHHHHHhCC---------CC
Q 004744 313 YNSL-INGLCKKGRCDRAKEVLDEMLQMG---LSPDTATYNTLLVES--CRKENMSEAEEIFCEMSRRG---------VA 377 (732)
Q Consensus 313 ~~~l-i~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~g---------~~ 377 (732)
|.-+ +..+...++...|.+.++.+...- ..|...++..++.+. .+.+..+++.+.++.+.... ..
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 1222 112222256666666666655321 122333333333332 23444555555555442211 12
Q ss_pred CCHhHHHHHHHHH--HhCCCHHHHHHHHHHH
Q 004744 378 PDIVSFSTLIGIF--SRNGQLDRALMYFREM 406 (732)
Q Consensus 378 ~~~~~~~~l~~~~--~~~g~~~~A~~l~~~~ 406 (732)
|...+|..++..+ ...|+++.+...++++
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2344555555443 3456655555555444
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.48 E-value=9.8 Score=40.28 Aligned_cols=133 Identities=16% Similarity=0.067 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004744 206 NACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAY 285 (732)
Q Consensus 206 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 285 (732)
...+.+..-+-++|..++|+++- +|..-. .....+.|+++.|.++..+.. +..-|..|.++.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 34567777777888877777642 222211 123456788999888776643 677899999999
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHH
Q 004744 286 CREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAE 365 (732)
Q Consensus 286 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 365 (732)
.+.|++..|.+.|..... |..|+-.+...|+.+.-..+-....+.|. - |....+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHH
Confidence 999999999999987654 56777888888888777776666666652 2 23334566789999999
Q ss_pred HHHHHH
Q 004744 366 EIFCEM 371 (732)
Q Consensus 366 ~~~~~~ 371 (732)
+++.+-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 887654
No 323
>PRK09687 putative lyase; Provisional
Probab=86.35 E-value=35 Score=33.50 Aligned_cols=17 Identities=12% Similarity=-0.017 Sum_probs=7.2
Q ss_pred CHhhHHHHHHHHHhcCC
Q 004744 309 GVFTYNSLINGLCKKGR 325 (732)
Q Consensus 309 ~~~~~~~li~~~~~~g~ 325 (732)
|...-...+.++.+.|+
T Consensus 67 d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 67 NPIERDIGADILSQLGM 83 (280)
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 33333444444444443
No 324
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=86.18 E-value=37 Score=33.61 Aligned_cols=150 Identities=16% Similarity=0.098 Sum_probs=73.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 004744 497 KDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCK----VGEMEKANKLWADMISRKISPNYISYGILINGYCS----M 568 (732)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 568 (732)
..+++..+...+......+ +......+...|.. ..+..+|.+.|....+.| .......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4567777777777766532 22333334444432 335666777777666554 23333344444444 2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 004744 569 GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSG-------DASKADEFLSKMVSEGVDPDSISYNTLINGFVR---- 637 (732)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 637 (732)
.+..+|...|+...+.|..+...+...+...|...+ +...|...|.++-..+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 366667777777766663332222333333333221 1224555555555543 22233333333322
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 004744 638 EENMDKAFALVSKMENQG 655 (732)
Q Consensus 638 ~g~~~~A~~~~~~~~~~g 655 (732)
..+.++|...|++..+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 224555555555555544
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.03 E-value=1.8 Score=27.63 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 696 STYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 696 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
.+++.|+..|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777654
No 326
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.02 E-value=26 Score=31.66 Aligned_cols=88 Identities=15% Similarity=0.005 Sum_probs=55.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004744 633 NGFVREENMDKAFALVSKMENQGLVPDVI-----TYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVS 707 (732)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 707 (732)
..+...|++++|..-++..... |... +=-.|.+.....|.+|+|...+....+.+.. ......-++++..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 4456667777777777766642 2222 2223556666778888888877766553322 2334456677888
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 004744 708 QNNLKEAFRFHDEMLQRG 725 (732)
Q Consensus 708 ~g~~~~A~~~~~~m~~~g 725 (732)
.|+.++|+.-|++.++.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 888888888888877664
No 327
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.78 E-value=35 Score=32.92 Aligned_cols=66 Identities=14% Similarity=0.252 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCC
Q 004744 663 YNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAFRFHDEML-----QRGFVPDD 730 (732)
Q Consensus 663 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~pd~ 730 (732)
++.....|..+|.+.+|.++-++.+. +.| +...|-.|+..|...|+--+|.+-++++. +.|+..|+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdd 353 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDD 353 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcch
Confidence 34556777888888888888888887 666 66778888888888888777777776663 24655543
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.42 E-value=8.3 Score=35.03 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=51.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHH
Q 004744 636 VREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE---KGLNPDRSTYTTLINGHVSQNNLK 712 (732)
Q Consensus 636 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~g~~p~~~~~~~l~~~~~~~g~~~ 712 (732)
.+.|+ ++|.+.|-.+...+.--++.....|+.-|. ..+.++|..++.++++ .+-.+|+..+..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 567777777776654445555555554444 4577888888887776 222456778888888888888888
Q ss_pred HHH
Q 004744 713 EAF 715 (732)
Q Consensus 713 ~A~ 715 (732)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 776
No 329
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.36 E-value=10 Score=35.41 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 697 TYTTLINGHVSQNNLKEAFRFHDEMLQR 724 (732)
Q Consensus 697 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 724 (732)
....++....+.|+.++|.+++.+++..
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3344555556666666666666666643
No 330
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.31 E-value=47 Score=33.93 Aligned_cols=65 Identities=11% Similarity=-0.000 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 449 DVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFP---DFYTFTTLIHGHCKDGNMNKALNLFDIMTQ 513 (732)
Q Consensus 449 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (732)
...+|..++..+.+.|.++.|...+..+...+... ++.....-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666666666666666665533111 223333344455556666666666665555
No 331
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.19 E-value=15 Score=35.72 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004744 570 HVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMV 617 (732)
Q Consensus 570 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (732)
+.++++.++..=+.-|+-||..+++.+++.+.+.+++.+|..+...|+
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555544444443
No 332
>PRK09687 putative lyase; Provisional
Probab=84.67 E-value=43 Score=32.94 Aligned_cols=232 Identities=10% Similarity=0.004 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHHH
Q 004744 449 DVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNM----NKALNLFDIMTQKSIKPDIVTYN 524 (732)
Q Consensus 449 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~ 524 (732)
|.......+..+...|.. ++...+..+... +|...-...+.++.+.|+. +++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 444444455555555432 233333333322 2444455555555555552 3555666555333 23444444
Q ss_pred HHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004744 525 TLIDGFCKVGEM-----EKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKG 599 (732)
Q Consensus 525 ~li~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 599 (732)
..+.++...+.. ..+...+...... ++..+-...+.++.+.|+ ++|+..+-.+.+. +|..+-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 444444443321 1223333332222 244555556666666665 4566666666543 344444444444
Q ss_pred HHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004744 600 YCRSG-DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHD 678 (732)
Q Consensus 600 ~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 678 (732)
+.+.+ ..+.+...+..+.. .++...-...+.++.+.|+ ..|+..+-+..+. ++ .....+.++...|. .+
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~---~~--~~~~a~~ALg~ig~-~~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK---GT--VGDLIIEAAGELGD-KT 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC---Cc--hHHHHHHHHHhcCC-Hh
Confidence 44432 23456666666654 3455556666667777776 4566555555543 22 23356666777776 36
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004744 679 SELILWRMIEKGLNPDRSTYTTLINGH 705 (732)
Q Consensus 679 A~~~~~~~~~~g~~p~~~~~~~l~~~~ 705 (732)
|...+.++.+ -.||...-...+.++
T Consensus 253 a~p~L~~l~~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 253 LLPVLDTLLY--KFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHHh--hCCChhHHHHHHHHH
Confidence 7777777776 344554444444433
No 333
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.55 E-value=63 Score=36.99 Aligned_cols=39 Identities=5% Similarity=0.024 Sum_probs=26.0
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 004744 284 AYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCK 322 (732)
Q Consensus 284 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 322 (732)
.|++....+-+..+++.+....-.++..-.+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 456667777777777777765545566666677766654
No 334
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.26 E-value=21 Score=36.99 Aligned_cols=106 Identities=19% Similarity=0.133 Sum_probs=62.5
Q ss_pred HHHcCCHHHHHHHHHHHHHC---CC--CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC-----
Q 004744 600 YCRSGDASKADEFLSKMVSE---GV--DPD---SISYNTLINGFVREENMDKAFALVSKMEN-------QGLVPD----- 659 (732)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~---~~--~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~g~~p~----- 659 (732)
+...|++.+|.+++...--. |. .|. -..||.|.-.+.+.|.+.-+..+|.++.. .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 44567777777776543211 21 111 12245555555666666666666666653 454442
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004744 660 ------VITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVS 707 (732)
Q Consensus 660 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 707 (732)
..+||+ +-.|.+.|+.-.|.+.|.+.... +..++..|..|..+|..
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 123433 34566788888888888888763 44467778888887764
No 335
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.00 E-value=7.9 Score=30.19 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004744 642 DKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLI 702 (732)
Q Consensus 642 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 702 (732)
=++.+-++.+....+.|++.+..+-+.+|.+.+++..|+++|+-...+ ...+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 345555666666667788888888888888888888888888876642 222344565554
No 336
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=83.94 E-value=47 Score=32.87 Aligned_cols=152 Identities=15% Similarity=0.055 Sum_probs=92.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 004744 461 CRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCK----DGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCK---- 532 (732)
Q Consensus 461 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 532 (732)
...+.+..+...+......+ +......+...|.. ..+..+|..+|..+.+.|.. .....|...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCc
Confidence 45667888888888777643 22344444444433 34578888888877766532 333345555544
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---
Q 004744 533 VGEMEKANKLWADMISRKISPNYISYGILINGYCSMG-------HVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCR--- 602 (732)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 602 (732)
..+..+|...|++..+.|..+-..+...+...|..-. +...|...|.++-..+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 3378888888888888875543223444444444421 2336888888877776 44444445544433
Q ss_pred -cCCHHHHHHHHHHHHHCCC
Q 004744 603 -SGDASKADEFLSKMVSEGV 621 (732)
Q Consensus 603 -~g~~~~A~~~~~~~~~~~~ 621 (732)
..+.++|...|.+..+.|.
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 2367788888888877653
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.65 E-value=2.9 Score=25.16 Aligned_cols=28 Identities=18% Similarity=0.282 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 696 STYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 696 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
.+|..++..|...|++++|.+.+++.++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688899999999999999999999884
No 338
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.56 E-value=38 Score=31.56 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=15.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC
Q 004744 319 GLCKKGRCDRAKEVLDEMLQMGLS 342 (732)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~g~~ 342 (732)
.-...+++.+|+.+|+++....+.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344566777777777777665443
No 339
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.17 E-value=84 Score=35.18 Aligned_cols=95 Identities=9% Similarity=-0.029 Sum_probs=60.2
Q ss_pred hhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004744 158 SFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIE 237 (732)
Q Consensus 158 ~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 237 (732)
.++..+...+.....-..-+..+.+.+++.+-+.++.. +..+...--....++...|+.++|......+-..| .
T Consensus 87 ~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~ 160 (644)
T PRK11619 87 NFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-K 160 (644)
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-C
Confidence 33443444554455555556666777788776663311 12355555666778888899888887777776666 4
Q ss_pred CCHHHHHHHHHHHHhcCChhH
Q 004744 238 LNVYTLNIMVNALCKDHKIDS 258 (732)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~ 258 (732)
..+..++.+...+.+.|.+..
T Consensus 161 ~~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 161 SLPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred CCChHHHHHHHHHHHcCCCCH
Confidence 556677777777776666544
No 340
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.02 E-value=3 Score=26.52 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 661 ITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 661 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
.+++.|...|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887765
No 341
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.00 E-value=7.5 Score=30.68 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 643 KAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLIN 703 (732)
Q Consensus 643 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 703 (732)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|+++|+-...+ ..+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 44555666666677888888888888888888888888888887763 2223336666653
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.99 E-value=29 Score=29.81 Aligned_cols=53 Identities=15% Similarity=0.038 Sum_probs=34.3
Q ss_pred hCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004744 130 RGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKG 200 (732)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 200 (732)
+.+.++++..+++.+.-- .|..+..-..-+..+...|++++|+++|+.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvL------------------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL------------------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHh------------------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 477888888888766421 11222222233445678899999999999888765
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.63 E-value=13 Score=33.81 Aligned_cols=21 Identities=0% Similarity=0.014 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 004744 659 DVITYNVILTGFCRQGRMHDS 679 (732)
Q Consensus 659 ~~~~~~~l~~~~~~~g~~~~A 679 (732)
|+..+..|+..+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 334444444444444444433
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.27 E-value=11 Score=34.60 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 004744 592 SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD----VITYNVIL 667 (732)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~ 667 (732)
|.+..++.+.+.+.+.+|+...+.-++.. +.|..+-..++..+|-.|++++|..-++-.-+ +.|+ ..+|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHH
Confidence 34556777888999999999998888754 33566667789999999999999988887776 4554 34555555
Q ss_pred H
Q 004744 668 T 668 (732)
Q Consensus 668 ~ 668 (732)
.
T Consensus 80 r 80 (273)
T COG4455 80 R 80 (273)
T ss_pred H
Confidence 4
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.99 E-value=51 Score=31.87 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004744 560 ILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKM 616 (732)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (732)
.....|..+|.+.+|.++.+..+..+ +.+...+-.++..+...|+--.|.+-++++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445555666666666665555543 444555555555555556554444444444
No 346
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.97 E-value=7.9 Score=40.76 Aligned_cols=74 Identities=8% Similarity=-0.034 Sum_probs=37.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004744 176 VIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALC 251 (732)
Q Consensus 176 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (732)
|.+...+.|.+.+|..++.+.+.... ..+-++..+.+++.-..+++.|++.|..+.+.. +.+...-+.|...-|
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 34444445555555555555554432 234445555555555556666666666555543 334444444444333
No 347
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.62 E-value=16 Score=35.38 Aligned_cols=96 Identities=20% Similarity=0.238 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC---CCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 004744 274 DTVTYNTLINAYCREGFLEEAFQLMNSMSGKG---LKPG--VFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATY 348 (732)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 348 (732)
.+.+...++..--...+++.+...+-+++..- ..|+ ..+|.. ++-.-++++++.++..=++.|+.||..++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir----lllky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR----LLLKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH----HHHccChHHHHHHHhCcchhccccchhhH
Confidence 44444555554444566666666666554420 1111 122221 22233555666666666666777777777
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHh
Q 004744 349 NTLLVESCRKENMSEAEEIFCEMSR 373 (732)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~ 373 (732)
+.+++.+.+.+++.+|.++...|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777777777777666666655543
No 348
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.33 E-value=0.81 Score=44.53 Aligned_cols=119 Identities=14% Similarity=0.099 Sum_probs=85.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 004744 601 CRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVI-TYNVILTGFCRQGRMHDS 679 (732)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A 679 (732)
...|.+++|++.|...++.. ++....|..-.+.+.+.++...|++-+....+ +.||.. -|-.-..+-...|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 35688999999998888754 34566677777888889999999998888888 667653 444444445567999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 680 ELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQR 724 (732)
Q Consensus 680 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 724 (732)
...++...+.++.+....| +-...-+.+..++-.+.+++..+.
T Consensus 202 a~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHHH
Confidence 9999999996666554433 444455666666666666666553
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.45 E-value=10 Score=33.64 Aligned_cols=117 Identities=10% Similarity=0.023 Sum_probs=60.7
Q ss_pred HHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHH
Q 004744 100 GQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRT 179 (732)
Q Consensus 100 a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 179 (732)
|++-.+......|....+..-|...+.-++......++..++++++.+. -.....+|....++-.++.+
T Consensus 10 ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~-----------eeAL~I~P~~hdAlw~lGnA 78 (186)
T PF06552_consen 10 ARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKF-----------EEALKINPNKHDALWCLGNA 78 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH-----------HHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH-----------HHHHhcCCchHHHHHHHHHH
Confidence 4444433334455533344556666666666666667766766665431 11112244445566666666
Q ss_pred HHHcCC-----------hHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 004744 180 YVQARK-----------LREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSG 235 (732)
Q Consensus 180 ~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 235 (732)
|...+. +++|.+.|+++... +|+...|+.-+... ..|-+++.++.+.+
T Consensus 79 ~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 79 YTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 665543 55666666666654 46667776666654 24666666666554
No 350
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=79.54 E-value=73 Score=32.11 Aligned_cols=77 Identities=4% Similarity=-0.074 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 004744 574 AFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVR---EENMDKAFALVSK 650 (732)
Q Consensus 574 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~ 650 (732)
-+.+++++++.+ +.+...+..++..+.+..+.++..+-+++++... +-+...|...++.... .-.+++...+|.+
T Consensus 50 klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 50 KLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 344455544442 3344444445555555555555555555555432 1134444444433322 1234444444444
Q ss_pred HH
Q 004744 651 ME 652 (732)
Q Consensus 651 ~~ 652 (732)
.+
T Consensus 128 ~l 129 (321)
T PF08424_consen 128 CL 129 (321)
T ss_pred HH
Confidence 33
No 351
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.38 E-value=6.7 Score=41.23 Aligned_cols=127 Identities=10% Similarity=0.022 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 573 EAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKME 652 (732)
Q Consensus 573 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 652 (732)
-|..++..|... +.|-..++|...-.+...|+...|.+.+..+......-..+..-.|.....+.|...+|-.++.+..
T Consensus 591 ~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 591 IGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 344444444322 3444444443333344567777888877776654333334455566667777777778888777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 004744 653 NQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLIN 703 (732)
Q Consensus 653 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 703 (732)
... ...+.++..++.++....+++.|++.|+++.+ ..|+ .++-+.|..
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~--~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALK--LTTKCPECENSLKL 718 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh--cCCCChhhHHHHHH
Confidence 643 34456677777788777888888888888877 4553 444444443
No 352
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=79.07 E-value=1.1e+02 Score=33.85 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=20.0
Q ss_pred CCCChHHHHHHHHHHHhCCChHHHHHHHH
Q 004744 114 VKHSSMSLSAMIHFLVRGRRISDAQALIL 142 (732)
Q Consensus 114 ~~~~~~~~~~l~~~l~~~~~~~~a~~~~~ 142 (732)
..|++.-|. .+..+.-.|++++|.+++.
T Consensus 145 ~~~~p~FW~-~v~~lvlrG~~~~a~~lL~ 172 (566)
T PF07575_consen 145 YEHDPDFWD-YVQRLVLRGLFDQARQLLR 172 (566)
T ss_dssp CSGSHHHHH-HHHHHHHTT-HHHHHHHH-
T ss_pred CccchhHHH-HHHHHHHcCCHHHHHHHHH
Confidence 455677777 5667777899999998884
No 353
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.43 E-value=2.4 Score=25.27 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=11.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 004744 700 TLINGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 700 ~l~~~~~~~g~~~~A~~~~~~m~ 722 (732)
.++.++.+.|++++|.+.+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 34444555555555555555554
No 354
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.05 E-value=1.4e+02 Score=34.45 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH-HHHHHHHH---HHHHcCChHHHHHHHHHHHH
Q 004744 173 FDLVIRTYVQARKLREGSEVFRLLRNKGICFSI-NACNSLLG---GLVKIGWVDLAREVYAEVVR 233 (732)
Q Consensus 173 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~---~~~~~g~~~~a~~~~~~~~~ 233 (732)
+..=+..+.+..++++|+..-+.....++.-.. ..+..... -+..+|++++|.+.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 555566777778888888876655443222111 12222333 25678899999999998743
No 355
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.76 E-value=3.5 Score=24.51 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 665 VILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 665 ~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
.++.++.+.|++++|...|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 455566666777777777777665
No 356
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.59 E-value=3.4 Score=23.30 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 004744 699 TTLINGHVSQNNLKEAFRFHD 719 (732)
Q Consensus 699 ~~l~~~~~~~g~~~~A~~~~~ 719 (732)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445555556666666655543
No 357
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.27 E-value=91 Score=31.98 Aligned_cols=117 Identities=10% Similarity=-0.041 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHH----hhhhhcC----CCCCchHHHHHH---HHHHHHcCC
Q 004744 117 SSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVD----SFVSTYS----PCGSNSLIFDLV---IRTYVQARK 185 (732)
Q Consensus 117 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~----~~~~~~~~~~~l---~~~~~~~g~ 185 (732)
-..++-.+..++.+.|+.+.|.+++++++-..+......+. .+..... ....|-..|.+| +..+.+.|.
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 36788889999999999999999999987432211111110 0011000 111344444443 566888999
Q ss_pred hHHHHHHHHHHHHCCCccCHHHHHHHHHHHH-HcCChHHHHHHHHHHHH
Q 004744 186 LREGSEVFRLLRNKGICFSINACNSLLGGLV-KIGWVDLAREVYAEVVR 233 (732)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~ 233 (732)
++.|+++.+-+...++.-|+.....+|+.|+ +.++++--+++++....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 9999999999998887777877777887764 77788888888877554
No 358
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.06 E-value=3.9 Score=23.06 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q 004744 173 FDLVIRTYVQARKLREGSEVFR 194 (732)
Q Consensus 173 ~~~l~~~~~~~g~~~~A~~~~~ 194 (732)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445666666677776666654
No 359
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.99 E-value=47 Score=31.16 Aligned_cols=118 Identities=9% Similarity=0.048 Sum_probs=68.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHH
Q 004744 565 YCSMGHVTEAFRLWYEMVGKGIKPTL-VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSIS-YNTLINGFVREENMD 642 (732)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~ 642 (732)
|....+++.|+..|.+.+.. .|+. .-|..=+-.+.+..+++.+.+--.+.++ +.||.+. ...+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 44555677777777666654 4555 3344455566667777777776666665 4455432 233445556667777
Q ss_pred HHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 643 KAFALVSKMEN----QGLVPDVITYNVILTGFCRQGRMHDSELILWRM 686 (732)
Q Consensus 643 ~A~~~~~~~~~----~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 686 (732)
+|+..+.+... ..+.+-..++..|..+-.+.=...++.++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 78777777643 233444455666655544433444444444443
No 360
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.75 E-value=28 Score=29.32 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 622 DPDSISYNTLINGFVREEN---MDKAFALVSKMENQGLVPD--VITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR 695 (732)
Q Consensus 622 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 695 (732)
.+...+--.+.+++.+..+ ..+.+.+++++.+. -+|+ ......|.-++.+.|+++++.++.+.+++ .+||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCc
Confidence 4555666667777776654 55667778777752 2332 23334566677888888888888888887 66654
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.65 E-value=5.6 Score=26.03 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 700 TLINGHVSQNNLKEAFRFHDEMLQR 724 (732)
Q Consensus 700 ~l~~~~~~~g~~~~A~~~~~~m~~~ 724 (732)
.|..+|...|+.+.|.+++++.++.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 3556666677777777777666643
No 362
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.60 E-value=52 Score=28.37 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=29.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004744 252 KDHKIDSAKMFLCEMEQKGVYPDTVTY-NTLINAYCREGFLEEAFQLMNSMSGK 304 (732)
Q Consensus 252 ~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 304 (732)
..++.+++..+++.|.-.. |+..-. ..-...+...|++++|.++|++..+.
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3567777777777776652 332211 11223455677777777777777665
No 363
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.58 E-value=1.1e+02 Score=32.19 Aligned_cols=163 Identities=12% Similarity=0.115 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004744 484 DFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILIN 563 (732)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 563 (732)
|.....+++..+...-...-...+..+|+..| -+...|..+++.|... ..++-..+|+++.+..+. |++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445555555555555555556666665543 2445555566665555 445555666655555433 4444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 004744 564 GYCSMGHVTEAFRLWYEMVGKGIKP--T---LVSCNTIIKGYCRSGDASKADEFLSKMVSE-GVDPDSISYNTLINGFVR 637 (732)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 637 (732)
-|-+ ++.+.+...|.++...-++. + ...|..+...- ..+.+.-..+..++... |..--.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4443 55556666665555432110 1 11233222111 23344444444444332 222233344444445555
Q ss_pred cCCHHHHHHHHHHHHH
Q 004744 638 EENMDKAFALVSKMEN 653 (732)
Q Consensus 638 ~g~~~~A~~~~~~~~~ 653 (732)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 5555555555555554
No 364
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.83 E-value=52 Score=34.25 Aligned_cols=43 Identities=12% Similarity=-0.023 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004744 627 SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFC 671 (732)
Q Consensus 627 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 671 (732)
+||+= -.|...|+.-.|.+.|.+.... +.-++..|-.|..+|.
T Consensus 338 lYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 338 LYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 34433 3466788888888888887764 5567788888887776
No 365
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.66 E-value=6.7 Score=22.40 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 698 YTTLINGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 698 ~~~l~~~~~~~g~~~~A~~~~~~m~ 722 (732)
|..++.++...|++++|...+++.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444555555555555555555544
No 366
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.54 E-value=44 Score=32.11 Aligned_cols=88 Identities=11% Similarity=0.054 Sum_probs=54.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---
Q 004744 526 LIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCR--- 602 (732)
Q Consensus 526 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 602 (732)
-|++++..++|.++....-+-.+.--+........-|-.|.+.|....+.++-.......-..+...|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 46778888888887665544433211122334444455678888888887777777654323334456666665543
Q ss_pred --cCCHHHHHHHH
Q 004744 603 --SGDASKADEFL 613 (732)
Q Consensus 603 --~g~~~~A~~~~ 613 (732)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 58888888776
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.53 E-value=6.8 Score=22.38 Aligned_cols=27 Identities=7% Similarity=0.116 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 662 TYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 662 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
.|..++..+...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345555666666666666666666655
No 368
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.48 E-value=92 Score=30.22 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=10.6
Q ss_pred hCCChHHHHHHHHHHH
Q 004744 130 RGRRISDAQALILRMV 145 (732)
Q Consensus 130 ~~~~~~~a~~~~~~~~ 145 (732)
+++++++|.+++.+-.
T Consensus 2 ~~kky~eAidLL~~Ga 17 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA 17 (260)
T ss_dssp HTT-HHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH
Confidence 5677888888776653
No 369
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=72.54 E-value=1.5 Score=38.02 Aligned_cols=84 Identities=10% Similarity=0.167 Sum_probs=55.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 004744 246 MVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGR 325 (732)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 325 (732)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +......++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666677788888888888887665556778888888888888777777777721 12333455666666666
Q ss_pred hhHHHHHHHHH
Q 004744 326 CDRAKEVLDEM 336 (732)
Q Consensus 326 ~~~A~~~~~~~ 336 (732)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666665543
No 370
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.44 E-value=5 Score=39.35 Aligned_cols=120 Identities=13% Similarity=0.029 Sum_probs=85.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 004744 565 YCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDS-ISYNTLINGFVREENMDK 643 (732)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~ 643 (732)
....|.+++|++.|...+... ++....|..-.+++.+.+....|++-+...++. .||. ..|-.-..+..-.|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 345688999999999998875 666777777778888999999999999888774 4553 223333344456799999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004744 644 AFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEK 689 (732)
Q Consensus 644 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 689 (732)
|.+.+....+.++.+....| +=...-..+..++-...+++..+.
T Consensus 201 aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHHH
Confidence 99999999986655544433 444455666677777777776653
No 371
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=72.34 E-value=1e+02 Score=30.14 Aligned_cols=72 Identities=18% Similarity=0.320 Sum_probs=37.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004744 460 LCRAKMLTEADDLFNEMLERGVFPDFY----TFTTLIHGHCKDGNMNKALNLF-DIMTQKSIKPDIVTYNTLIDGFCKVG 534 (732)
Q Consensus 460 ~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g 534 (732)
..+...+++.....++-.+..--|+.. .|..++++ ..|..-.++. +.+++ ...+|.-|+.+++..|
T Consensus 265 ~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsa----veWnKkeelva~qalr-----hlK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 265 VSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSA----VEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQG 335 (412)
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHH----HhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCC
Confidence 334455666666555444443345654 45555554 3333222221 12222 3456788888999988
Q ss_pred CHHHHH
Q 004744 535 EMEKAN 540 (732)
Q Consensus 535 ~~~~A~ 540 (732)
+.+-.+
T Consensus 336 ~sEL~L 341 (412)
T KOG2297|consen 336 QSELEL 341 (412)
T ss_pred hHHHHH
Confidence 877543
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.12 E-value=9.3 Score=25.00 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=10.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh
Q 004744 281 LINAYCREGFLEEAFQLMNSMSG 303 (732)
Q Consensus 281 li~~~~~~g~~~~A~~~~~~m~~ 303 (732)
|..+|.+.|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34444444555555554444443
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.93 E-value=12 Score=28.05 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=28.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 672 RQGRMHDSELILWRMIEKGLNP-D-RSTYTTLINGHVSQNNLKEAFRFHD 719 (732)
Q Consensus 672 ~~g~~~~A~~~~~~~~~~g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~ 719 (732)
...+.++|+..|++.+++-..| + ..+.-.|+.+|+..|++++++++-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777777776632222 2 1455556666777777777666543
No 374
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=69.47 E-value=37 Score=26.66 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 570 HVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 618 (732)
Q Consensus 570 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (732)
+.-++.+-++.+....+-|++.+..+.+++|.+.+++..|.++++-...
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3345555566666666666666666666777666777777766665553
No 375
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=69.32 E-value=55 Score=32.38 Aligned_cols=90 Identities=14% Similarity=0.300 Sum_probs=51.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH-HHH
Q 004744 596 IIKGYCRSGDASKADEFLSKMVSE---GVDPDSISYN--TLINGFVREENMDKAFALVSKMEN-----QGLVPDVI-TYN 664 (732)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~-~~~ 664 (732)
++....+.++.++|.++++++.+. .-.|+.+.|. ..+..+...|+..++.+.+++..+ .|++|+.. .|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 334445566778888888777653 2345555543 344555667777777777777666 55666443 455
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHH
Q 004744 665 VILTGFCRQ-GRMHDSELILWRMIE 688 (732)
Q Consensus 665 ~l~~~~~~~-g~~~~A~~~~~~~~~ 688 (732)
.+.+-|.+. |++. .+|+.++.
T Consensus 161 ~lssqYyk~~~d~a---~yYr~~L~ 182 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFA---SYYRHALL 182 (380)
T ss_pred HHHHHHHHHHHhHH---HHHHHHHH
Confidence 555555432 3332 34555554
No 376
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.18 E-value=1.5e+02 Score=30.91 Aligned_cols=118 Identities=13% Similarity=0.147 Sum_probs=54.7
Q ss_pred cCChhHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 004744 253 DHKIDSAK-MFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKE 331 (732)
Q Consensus 253 ~g~~~~A~-~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 331 (732)
.|++..|. +++.-+....-.|+.+...+.| +...|+++.+.+.+...... +.....+...+++...+.|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34444443 2333333333334443333332 34456666666655544322 22244455556666666666666666
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhC
Q 004744 332 VLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRR 374 (732)
Q Consensus 332 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (732)
.-.-|+...+.. ...........-..|-++++.-.++++...
T Consensus 379 ~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 379 TAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 666665544332 111121222223345556666666655543
No 377
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.08 E-value=44 Score=26.43 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004744 606 ASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWR 685 (732)
Q Consensus 606 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 685 (732)
.++|..+-+-+...+-. ....-..-+..+...|++++|..+.+.+ ..||...|.+|.. .+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45666665555443211 1112122234456667777776665554 2566666654432 255666666665555
Q ss_pred HHHcC
Q 004744 686 MIEKG 690 (732)
Q Consensus 686 ~~~~g 690 (732)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 55543
No 378
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=68.80 E-value=1.9e+02 Score=31.96 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=21.6
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLR 197 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 197 (732)
.++.-|+ .+..+.-.|++++|.++++...
T Consensus 147 ~~p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 147 HDPDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp GSHHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred cchhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 4478898 6778888999999999985543
No 379
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=67.68 E-value=24 Score=24.22 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004744 665 VILTGFCRQGRMHDSELILWRMIEKGLNPDRST 697 (732)
Q Consensus 665 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 697 (732)
.+.-++.+.|++++|.++.+.+++ ++|+..-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHH
Confidence 345566777777777777777777 6776533
No 380
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.20 E-value=1.1e+02 Score=28.75 Aligned_cols=84 Identities=14% Similarity=-0.028 Sum_probs=47.6
Q ss_pred HhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHH
Q 004744 129 VRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINAC 208 (732)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 208 (732)
...+++++|...|.+++..+ |..+.-|+.-+-+|.+..+++.+.+--+.+++..+. .+...
T Consensus 21 f~~k~y~~ai~~y~raI~~n------------------P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h 81 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICIN------------------PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAH 81 (284)
T ss_pred cchhhhchHHHHHHHHHhcC------------------CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHH
Confidence 34566677777776666432 222344555566666666676666666666654221 22333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 004744 209 NSLLGGLVKIGWVDLAREVYAEV 231 (732)
Q Consensus 209 ~~ll~~~~~~g~~~~a~~~~~~~ 231 (732)
-.+..++.....+++|+.++.++
T Consensus 82 ~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 82 YFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHHHhhccccHHHHHHHHH
Confidence 44445556666667776666665
No 381
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=66.80 E-value=7.7 Score=39.99 Aligned_cols=104 Identities=19% Similarity=0.158 Sum_probs=78.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 004744 597 IKGYCRSGDASKADEFLSKMVSEGVDPDSISY-NTLINGFVREENMDKAFALVSKMENQGLVPDV-ITYNVILTGFCRQG 674 (732)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g 674 (732)
+.-..+.+.++.|..++.++++. .|+...| ..-..++.+.+++..|+.=+.++++ ..|+. ..|..-+.+|.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHH
Confidence 44556778899999999999984 5765444 3444788899999999999999888 45654 35555667777888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004744 675 RMHDSELILWRMIEKGLNPDRSTYTTLINGHV 706 (732)
Q Consensus 675 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 706 (732)
++.+|...|+.... +.|+..-....+.-|-
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 89999999988888 8888766666665443
No 382
>PRK10941 hypothetical protein; Provisional
Probab=66.74 E-value=80 Score=30.75 Aligned_cols=76 Identities=14% Similarity=0.081 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 004744 628 YNTLINGFVREENMDKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDSELILWRMIE-KGLNPDRSTYTTLINGH 705 (732)
Q Consensus 628 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~ 705 (732)
.+.+-.+|.+.++++.|+++.+.+.. +.|+ +.-+.--+-.|.+.|.+..|..-++..++ ..-.|+.......+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 44566778899999999999999988 5564 45677777778899999999998888887 22333444444444443
No 383
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.15 E-value=27 Score=39.04 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 004744 311 FTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTA 346 (732)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 346 (732)
.+..+.+..+.+.+++..|..+-.++++.+..|...
T Consensus 1085 lalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1085 LALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 345556677778888888888877777776555544
No 384
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.58 E-value=67 Score=25.49 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=19.7
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004744 286 CREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQM 339 (732)
Q Consensus 286 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 339 (732)
...|+|++|..+.+.. +.||...|..|.. .+.|..+++..-+.++...
T Consensus 50 mNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 50 MNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3444455544444333 2344444443322 2334444444444444433
No 385
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.56 E-value=1e+02 Score=28.85 Aligned_cols=48 Identities=19% Similarity=0.150 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHCCCCC----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004744 642 DKAFALVSKMENQGLVP----DV-ITYNVILTGFCRQGRMHDSELILWRMIEK 689 (732)
Q Consensus 642 ~~A~~~~~~~~~~g~~p----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 689 (732)
..|.+.|.+..+..-.| +. .+...++....+.|+.++|.+.|.+++..
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 44555555555432221 22 22334445566778888888888887763
No 386
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=65.40 E-value=1.4e+02 Score=29.01 Aligned_cols=166 Identities=13% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHhCC--------CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 004744 262 FLCEMEQKG--------VYPDTVTYNTLIN-AYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEV 332 (732)
Q Consensus 262 ~~~~~~~~g--------~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 332 (732)
++.-+.+.| ++.|..-+|+|+. ---+...++++++-.++-- |-.-...++..+...|++.++.+.+.+.
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~ 137 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEW 137 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHHC----CCCCCHH-hHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHH--HHhCCCHHHHHHHHHH
Q 004744 333 LDEMLQM----GLSPDTA-TYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGI--FSRNGQLDRALMYFRE 405 (732)
Q Consensus 333 ~~~~~~~----g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~l~~~ 405 (732)
..+..+. |.+.|+. +-..|.-.|....-+++.++..+.|.++|...+...-...-.+ +....++.+|-.++.+
T Consensus 138 ~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d 217 (412)
T COG5187 138 MRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSD 217 (412)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC
Q 004744 406 MKSAGLVPDNVLYTIIINGYCRNG 429 (732)
Q Consensus 406 ~~~~~~~~~~~~~~~li~~~~~~g 429 (732)
....=-......|...+.-..-+|
T Consensus 218 ~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 218 ILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HhccccccccccHHHHHHHHHHhh
No 387
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=65.02 E-value=70 Score=25.52 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 573 EAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 618 (732)
Q Consensus 573 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (732)
+..+-++.+....+-|++.+..+.+++|.+.+++..|.++++-...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555555555566666777777777777777777777777766654
No 388
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.32 E-value=62 Score=27.19 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 677 HDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEM 721 (732)
Q Consensus 677 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 721 (732)
+++..+|+.|..+|+--. +..|...+..+...|++++|.++++..
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 378888888888777664 467777888888888888888887753
No 389
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=64.26 E-value=1.9e+02 Score=30.22 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=17.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 004744 123 AMIHFLVRGRRISDAQALILRMV 145 (732)
Q Consensus 123 ~l~~~l~~~~~~~~a~~~~~~~~ 145 (732)
.+..-+..+|.|+.|.++|.+-+
T Consensus 123 ~laadhvAAGsFetAm~LLnrQi 145 (422)
T PF06957_consen 123 SLAADHVAAGSFETAMQLLNRQI 145 (422)
T ss_dssp -SHHHHHHCT-HHHHHHHHHHHC
T ss_pred CcHHHHHHhCCHHHHHHHHHHHh
Confidence 45667788999999999998765
No 390
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=63.94 E-value=14 Score=38.14 Aligned_cols=106 Identities=12% Similarity=0.019 Sum_probs=79.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 004744 562 INGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCN-TIIKGYCRSGDASKADEFLSKMVSEGVDPD-SISYNTLINGFVREE 639 (732)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 639 (732)
++-+...++++.|+.++.+.++. .||...|- .=..++.+.+++..|+.=+.++++.. |+ ...|-.-..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 45566778999999999999987 56555443 33467889999999999998888854 43 334444456677788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004744 640 NMDKAFALVSKMENQGLVPDVITYNVILTGFCRQ 673 (732)
Q Consensus 640 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 673 (732)
++.+|+..|+.... +.|+..-....+.-|-..
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHHH
Confidence 89999999998888 788888777777766544
No 391
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.34 E-value=1.3e+02 Score=27.99 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 004744 558 YGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEG--VDPDSISYNTLING 634 (732)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~ 634 (732)
.+.-++.+.+.+.+.+|+...++-++.. +.|...-..++..||-.|++++|..-++-.-... ..+....|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445666777888899998888887763 5566677778888999999999988877765531 22334556555543
No 392
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=62.92 E-value=1.7e+02 Score=29.40 Aligned_cols=67 Identities=13% Similarity=-0.035 Sum_probs=44.8
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHc---CChHHHHHHHHHHHH
Q 004744 166 CGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKI---GWVDLAREVYAEVVR 233 (732)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 233 (732)
.+.+..++..+++.+.+....++..+.+++++...+. +...|...+...... -.+.....+|.+.++
T Consensus 61 np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 61 NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 3456677777777777777777778888888776544 677777777655442 245566666665543
No 393
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.96 E-value=46 Score=26.17 Aligned_cols=54 Identities=11% Similarity=0.053 Sum_probs=30.3
Q ss_pred HHhcCCHHHHHHHHHHHHH----CCCCCC--H--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 635 FVREENMDKAFALVSKMEN----QGLVPD--V--ITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~----~g~~p~--~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
..+.|++.+|.+.+.+..+ .+.... . .....+.......|+.++|...++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3467777777665555544 221111 1 1222344445566777777777777776
No 394
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=61.83 E-value=1e+02 Score=30.55 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHH-H
Q 004744 559 GILINGYCSMGHVTEAFRLWYEMVGK---GIKPTLVSCN--TIIKGYCRSGDASKADEFLSKMVS-----EGVDPDSI-S 627 (732)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~-~ 627 (732)
..++...-+.++.++|++.++++.++ .-.|+.+.|. .++..+...|+..++++.+.+..+ .+++|+.. .
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34445556778999999999999864 2245666554 456677788999999999998877 47777543 4
Q ss_pred HHHHHHHHH
Q 004744 628 YNTLINGFV 636 (732)
Q Consensus 628 ~~~li~~~~ 636 (732)
|..+..-|.
T Consensus 159 fY~lssqYy 167 (380)
T KOG2908|consen 159 FYSLSSQYY 167 (380)
T ss_pred HHHHHHHHH
Confidence 555554444
No 395
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.48 E-value=28 Score=26.14 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=7.5
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 004744 629 NTLINGFVREENMDKAFA 646 (732)
Q Consensus 629 ~~li~~~~~~g~~~~A~~ 646 (732)
..|+.+|+..|++.++++
T Consensus 47 G~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 396
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.40 E-value=1.5e+02 Score=28.28 Aligned_cols=268 Identities=16% Similarity=0.158 Sum_probs=157.4
Q ss_pred CCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC
Q 004744 409 AGLVPDNVLYTIIING-YCRNGFVLEALKMRDEMLEKGCVMDV---VTYNTILNGLCRAKMLTEADDLFNEMLER---GV 481 (732)
Q Consensus 409 ~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~ 481 (732)
.+..||+..-+..-.. -.+...+++|+.-|.+.++....... .....++....+.+++++..+.+.+++.- .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3455665543332221 12345899999999999886433232 34556788999999999999999998642 11
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-
Q 004744 482 --FPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQK--SIKPDI----VTYNTLIDGFCKVGEMEKANKLWADMISRKIS- 552 (732)
Q Consensus 482 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 552 (732)
..+..+.+++++......+.+.-...|+.-+.. .-+ +. .|-.-|...|...+++.+..+++.++...-..
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 124456788888777777777766666644321 111 11 12345677777788888888888887654111
Q ss_pred ---CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHH
Q 004744 553 ---PN-------YISYGILINGYCSMGHVTEAFRLWYEMVGK-GIKPTLVSCNTII----KGYCRSGDASKADEFLSKMV 617 (732)
Q Consensus 553 ---~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~ 617 (732)
.| ...|..-|.+|..+.+-.....+|++.+.. ..-|.+.....+- .+..+.|.+++|..-|=++-
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 11 246777788888888888888888877643 2245554443322 23457788888865554444
Q ss_pred HC----CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 618 SE----GVDPDSIS---YNTLINGFVREENMDKAFALVSKMENQGL--VPDVITYNVILTGFCRQGRMHDSELILW 684 (732)
Q Consensus 618 ~~----~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 684 (732)
+. | .|...+ |..|.+++.+.| +.-|+.-..+.. .|.......++.+|-. +++.+-+++++
T Consensus 259 KNYDEsG-spRRttCLKYLVLANMLmkS~-----iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 259 KNYDESG-SPRRTTCLKYLVLANMLMKSG-----INPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred hcccccC-CcchhHHHHHHHHHHHHHHcC-----CCCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 32 3 233322 333444443332 222222222222 2334566778888754 46655555444
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.22 E-value=1.4e+02 Score=30.85 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=36.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 004744 529 GFCKVGEMEKANKLWADMISRKISPNYI--SYGILINGYC--SMGHVTEAFRLWYEMVGK 584 (732)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~~ 584 (732)
.+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445778888888888888876 444443 3444445544 456777888888876654
No 398
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.64 E-value=20 Score=25.64 Aligned_cols=46 Identities=9% Similarity=0.239 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 641 MDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 641 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
+++..++++.+.. ..-|..-.-.++.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444443 233444444555666666666666666665543
No 399
>PHA02875 ankyrin repeat protein; Provisional
Probab=60.57 E-value=2.2e+02 Score=29.83 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=6.1
Q ss_pred HHHHhcCChhHHHH
Q 004744 318 NGLCKKGRCDRAKE 331 (732)
Q Consensus 318 ~~~~~~g~~~~A~~ 331 (732)
...+..|+.+.+..
T Consensus 73 ~~A~~~g~~~~v~~ 86 (413)
T PHA02875 73 HDAVEEGDVKAVEE 86 (413)
T ss_pred HHHHHCCCHHHHHH
Confidence 33344455444333
No 400
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.15 E-value=59 Score=26.98 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=40.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004744 644 AFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLI 702 (732)
Q Consensus 644 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 702 (732)
..+-++.+....+.|++.+...-+++|.+.+++..|.++|+-...+ ..+....|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 3444556666678888888888888888888999998888877653 333333455444
No 401
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.05 E-value=3.5e+02 Score=32.00 Aligned_cols=127 Identities=12% Similarity=-0.010 Sum_probs=76.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcC--------C-CCCc----hHHHHHHHHHHHHcCChHHH
Q 004744 123 AMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYS--------P-CGSN----SLIFDLVIRTYVQARKLREG 189 (732)
Q Consensus 123 ~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~-~~~~----~~~~~~l~~~~~~~g~~~~A 189 (732)
.+..+|...|...+|...|.++. +|.....+...++.... + .+.. ..-|..+++.+-+-+..+++
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~--Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~v 1002 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSAL--SGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEV 1002 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHh--hccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHH
Confidence 34445778899999999999987 44443334444444311 1 1111 34477888888888999999
Q ss_pred HHHHHHHHHCCCc--cC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChh
Q 004744 190 SEVFRLLRNKGIC--FS-INACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVY----TLNIMVNALCKDHKID 257 (732)
Q Consensus 190 ~~~~~~~~~~~~~--~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~ 257 (732)
.++-..+++.-.. |. +..++.+.+-....|.+.+|....- + .||.. ....++..++.+|+++
T Consensus 1003 cQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~---~---npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1003 CQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL---R---NPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH---c---CCcHHHHHHHHHHHHHHHHhccchH
Confidence 9888888765222 11 2345666666666676666655433 2 23333 2344555666666643
No 402
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.98 E-value=1.2e+02 Score=29.37 Aligned_cols=88 Identities=18% Similarity=0.112 Sum_probs=61.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Q 004744 491 LIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYC---- 566 (732)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---- 566 (732)
=|.+++..+++.+++...-+--+.--+.-+.....-|-.|.|.+++..+.++-..-....-.-+...|.+++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 4788899999999887654443321122334445556679999999998888877776533345556888777765
Q ss_pred -hcCCHHHHHHHH
Q 004744 567 -SMGHVTEAFRLW 578 (732)
Q Consensus 567 -~~g~~~~A~~~~ 578 (732)
-.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 469999998877
No 403
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.95 E-value=15 Score=25.22 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004744 697 TYTTLINGHVSQNNLKEAFRFHDEMLQRGFVPD 729 (732)
Q Consensus 697 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 729 (732)
....+.-++.+.|++++|.++.+.+++ +.|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~ 33 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--IEPD 33 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 345677789999999999999999984 4555
No 404
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.72 E-value=22 Score=25.41 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 628 YNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 628 ~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
--.+|.+|...|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445555555555555555555543
No 405
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.29 E-value=3.3e+02 Score=31.11 Aligned_cols=129 Identities=12% Similarity=0.116 Sum_probs=78.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 004744 180 YVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSA 259 (732)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (732)
...+|+++.|++.-.++- +..+|..|+..-.++|+.+-|.-.|++... |..|--.|.-.|+.++-
T Consensus 653 aLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 356788888887655432 678899999988899999999888887654 23333345556777776
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004744 260 KMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQ 338 (732)
Q Consensus 260 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 338 (732)
.++......+ .|..+. ..... -.|+.++-.++++..-.. +.+|.. -...|.-++|.++.++...
T Consensus 718 ~Km~~iae~r---~D~~~~-~qnal--Yl~dv~ervkIl~n~g~~-----~laylt----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 718 SKMMKIAEIR---NDATGQ-FQNAL--YLGDVKERVKILENGGQL-----PLAYLT----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHHhh---hhhHHH-HHHHH--HhccHHHHHHHHHhcCcc-----cHHHHH----HhhcCcHHHHHHHHHhhcc
Confidence 6666555443 132221 12222 247777777776654331 222221 1245666777777776655
No 406
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=57.18 E-value=18 Score=22.83 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=24.8
Q ss_pred chhhhhccCCChHHHHHHHHhhccChhHHHHHH
Q 004744 72 NSLRSYQFRLNSVIIVEVLYRLRDNLQVGQRFI 104 (732)
Q Consensus 72 ~~l~~~~~~l~~~~~~~~l~~~~~~~~~a~~~f 104 (732)
+-|.++-|+.....+..+|..|+++.-.|.+.|
T Consensus 6 diL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 6 DILTRVFPHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred HHHHHHCCCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 345556667778888999999999988886543
No 407
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=56.95 E-value=3.2e+02 Score=30.53 Aligned_cols=172 Identities=10% Similarity=0.091 Sum_probs=79.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH-HCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHH
Q 004744 175 LVIRTYVQARKLREGSEVFRLLR-NKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVY---TLNIMVNAL 250 (732)
Q Consensus 175 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~ 250 (732)
.+-+.|...|.+++|++.--... ...+.++...+..++.-|... -.+.+.+.+..-. .+.+-|.. ..+.++..|
T Consensus 64 ~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~~~-~~~~iD~rL~~iv~rmi~kc 141 (929)
T KOG2062|consen 64 LASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYKNPE-QKSPIDQRLRDIVERMIQKC 141 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhcCcc-ccCCCCHHHHHHHHHHHHHh
Confidence 34477899999999998766554 445566666666655444322 1112222222110 01111222 222333333
Q ss_pred HhcCChhHHHH---------HHHH-HHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHh---hCCCCCCHhhHHHH
Q 004744 251 CKDHKIDSAKM---------FLCE-MEQKGVYPDTVTYNTLINAYCREGF-LEEAFQLMNSMS---GKGLKPGVFTYNSL 316 (732)
Q Consensus 251 ~~~g~~~~A~~---------~~~~-~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~---~~g~~p~~~~~~~l 316 (732)
...+++..|.- ++++ +.+..-.++ ..+.++.......+ -+--.++++.+. .....|| |..+
T Consensus 142 l~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~--~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD---y~~v 216 (929)
T KOG2062|consen 142 LDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIG--NLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD---YFSV 216 (929)
T ss_pred hhhhHHHHHHhHHhhhhhHHHHHHHhccccccch--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---eeee
Confidence 33334333322 3333 222211122 22223332222221 222222333332 2233444 5567
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004744 317 INGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVES 355 (732)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 355 (732)
..+|.-..+.+.|.++++++.+.. ....+|....+.+
T Consensus 217 c~c~v~Ldd~~~va~ll~kL~~e~--~~llayQIAFDL~ 253 (929)
T KOG2062|consen 217 CQCYVFLDDAEAVADLLEKLVKED--DLLLAYQIAFDLY 253 (929)
T ss_pred eeeeEEcCCHHHHHHHHHHHHhcc--hhhhHHHHHHHHh
Confidence 778888889999999999888731 2233444444443
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.75 E-value=30 Score=31.78 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004744 642 DKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP 693 (732)
Q Consensus 642 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 693 (732)
+...+..++..+ ..|++.+|..++.++...|+.++|.+..+++.. +-|
T Consensus 128 ~~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 334444455555 578888888888888888888888888888887 666
No 409
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.38 E-value=1.2e+02 Score=25.46 Aligned_cols=104 Identities=25% Similarity=0.243 Sum_probs=59.5
Q ss_pred ChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHH
Q 004744 96 NLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDL 175 (732)
Q Consensus 96 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 175 (732)
.++.=.++..|+....|. .+.-.....++.+.++.....+ .|...+.-..+|..
T Consensus 21 PL~~w~~yI~w~~~~~p~-----------------~~~~~~L~~lLer~~~~f~~~~---------~Y~nD~RylkiWi~ 74 (126)
T PF08311_consen 21 PLDPWLRYIKWIEENYPS-----------------GGKQSGLLELLERCIRKFKDDE---------RYKNDERYLKIWIK 74 (126)
T ss_dssp CHHHHHHHHHHHHHHCTT-----------------CCCCHHHHHHHHHHHHHHTTSG---------GGTT-HHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCC-----------------CCchhHHHHHHHHHHHHHhhhH---------hhcCCHHHHHHHHH
Confidence 344456788888777664 2444444556666665432110 01111122233333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004744 176 VIRTYVQARKLREGSEVFRLLRNKGICF-SINACNSLLGGLVKIGWVDLAREVYAEV 231 (732)
Q Consensus 176 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 231 (732)
.++ ..+++.++|..|...|+.. -+.-|..-...+.+.|++++|.++|...
T Consensus 75 ya~------~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 75 YAD------LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHT------TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHH------HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 322 3348899999998766543 3456777778888888888888888754
No 410
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.08 E-value=2.1e+02 Score=27.79 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004744 519 DIVTYNTLIDGFCKVGEMEKANKLW 543 (732)
Q Consensus 519 ~~~~~~~li~~~~~~g~~~~A~~~~ 543 (732)
|+.....+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5666677777888888887777665
No 411
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.49 E-value=1e+02 Score=24.80 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 605 DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILW 684 (732)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 684 (732)
..++|..+.+-+...+. .....--.-+..+...|++++|+. .-.. ...||...|.+|. -.+.|--+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl---~~~~-~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL---LPQC-HCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH---HHTT-S--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH---hccc-CCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 36777777777766542 122222333455667788888721 1111 1356666665443 236777777777777
Q ss_pred HHHHc
Q 004744 685 RMIEK 689 (732)
Q Consensus 685 ~~~~~ 689 (732)
++..+
T Consensus 94 rla~~ 98 (116)
T PF09477_consen 94 RLASS 98 (116)
T ss_dssp HHCT-
T ss_pred HHHhC
Confidence 66543
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.12 E-value=41 Score=30.84 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004744 621 VDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP 658 (732)
Q Consensus 621 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 658 (732)
..|+...|..++..+...|+.++|.+..+++.. .-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 457777788888888888888888888887776 445
No 413
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=52.25 E-value=2.2e+02 Score=27.17 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=40.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHH-cCChHHHHHHHHHHHH
Q 004744 176 VIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVK-IGWVDLAREVYAEVVR 233 (732)
Q Consensus 176 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~ 233 (732)
+++.+-+.|+++++++.+.++...++..+..-.|.+..+|-. .|....+++++..+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 567778889999999999999988888888777777777743 3555566666655543
No 414
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=52.14 E-value=1.5e+02 Score=25.23 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004744 587 KPTLVSCNTIIKGYCRSGD---ASKADEFLSKMVSE-GVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD 659 (732)
Q Consensus 587 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 659 (732)
.+...+--.+..++.+..+ .++.+.+++++.+. ...-.....-.|.-++.+.+++++++++.+.+.+ .+||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCC
Confidence 4445555556666665544 56677777777752 2222233444556677788888888888887777 3454
No 415
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.66 E-value=87 Score=25.46 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004744 171 LIFDLVIRTYVQARKLREGSEVFRLLRN 198 (732)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 198 (732)
.-|..|+..|...|+.++|++++.+..+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4578888889999999999999988876
No 416
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.87 E-value=3e+02 Score=28.32 Aligned_cols=153 Identities=10% Similarity=0.019 Sum_probs=74.7
Q ss_pred CChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHH
Q 004744 132 RRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSL 211 (732)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (732)
..+.++...|..++... .+..+...+ ...|-.+.+.-.+...+.++|+...|.++.++++-. =..++...
T Consensus 8 ~~Y~~~q~~F~~~v~~~--Dp~~l~~ll----~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~----~e~~~~~~ 77 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSH--DPNALINLL----QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA----FERAFHPS 77 (360)
T ss_pred HHHHHHHHHHHHHHHcc--CHHHHHHHH----HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHH
Confidence 34555666665555322 333333322 345666777777888899999988888888876531 00011111
Q ss_pred HHHH---HHcCChHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004744 212 LGGL---VKIGWVDLAREVYAEVVRSGIELNVYTLNI---MVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAY 285 (732)
Q Consensus 212 l~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 285 (732)
...+ ...|...- ....+-|...|.+ .+..+.+.|.+.-|.++.+-+...++.-|...--..|+.|
T Consensus 78 F~~~~~~~~~g~~rL---------~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ 148 (360)
T PF04910_consen 78 FSPFRSNLTSGNCRL---------DYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYY 148 (360)
T ss_pred hhhhhcccccCcccc---------CCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 1000 00010000 0001112222222 2345556666666666666666665444444444455544
Q ss_pred H-HcCCHHHHHHHHHHHhh
Q 004744 286 C-REGFLEEAFQLMNSMSG 303 (732)
Q Consensus 286 ~-~~g~~~~A~~~~~~m~~ 303 (732)
+ +.++++--+++.+....
T Consensus 149 ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 149 ALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHhcCCHHHHHHHHHhHhh
Confidence 3 45566655665555443
No 417
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.50 E-value=12 Score=31.26 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=22.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCC
Q 004744 704 GHVSQNNLKEAFRFHDEMLQRGFVPDD 730 (732)
Q Consensus 704 ~~~~~g~~~~A~~~~~~m~~~g~~pd~ 730 (732)
.+...|...+|.++|++|++.|-.||+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc
Confidence 456678888899999999999998886
No 418
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.60 E-value=1.3e+02 Score=23.66 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=36.1
Q ss_pred HHHcCCHHHHHHHHHHHHHC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 600 YCRSGDASKADEFLSKMVSE----GVDPD----SISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~----~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
..+.|++.+|.+.+.+..+. +.... ....-.+.......|+.++|...+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35788999987766666543 22221 22333455667788999999999999876
No 419
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.58 E-value=2.4e+02 Score=26.83 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCHHHH-----------HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 592 SCNTIIKGYCRSGDASKADEFLSKMVSE------GVDPDSISY-----------NTLINGFVREENMDKAFALVSKMENQ 654 (732)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~-----------~~li~~~~~~g~~~~A~~~~~~~~~~ 654 (732)
+...-.+-+.+.|++.+|...|.+++.. .-+|...-| ..+..++...|++-++++.-.+....
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3444455677889999999888876521 112332222 22334455677888888888887774
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004744 655 GLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD 694 (732)
Q Consensus 655 g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 694 (732)
.| |...|..-+.+....=+.++|..-|.+.++ ..|.
T Consensus 260 --~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldps 296 (329)
T KOG0545|consen 260 --HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPS 296 (329)
T ss_pred --CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChh
Confidence 34 445665555665555667778888888877 6664
No 420
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.55 E-value=3.3e+02 Score=28.50 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=7.5
Q ss_pred HHHHHcCCHHHHHHHH
Q 004744 283 NAYCREGFLEEAFQLM 298 (732)
Q Consensus 283 ~~~~~~g~~~~A~~~~ 298 (732)
...++.|+.+.+..++
T Consensus 73 ~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 73 HDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3344555555444443
No 421
>PRK12798 chemotaxis protein; Reviewed
Probab=49.08 E-value=3.3e+02 Score=28.28 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHH
Q 004744 498 DGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGF-CKVGEMEKANKLWADMI 547 (732)
Q Consensus 498 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~ 547 (732)
.|+.++|.+.+..+.....++....|-.|+.+- ....+...|+++|+...
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR 175 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQAR 175 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 466666666666555554555555555555433 23345556666665554
No 422
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.02 E-value=94 Score=30.82 Aligned_cols=94 Identities=13% Similarity=0.045 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 004744 593 CNTIIKGYCRSGDASKADEFLSKMVSEG---VDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVI-TYNVILT 668 (732)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~ 668 (732)
|--=..-|.+..++..|...|.+-++.. ...+.+.|+.-..+-..-|++..|+.--..... +.|+.. .|..=..
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhH
Confidence 3334555667777777777777766542 122355666666666666777777777776666 456432 3333344
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004744 669 GFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 669 ~~~~~g~~~~A~~~~~~~~~ 688 (732)
++....++++|....++..+
T Consensus 162 c~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 45556667777766666544
No 423
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.78 E-value=1.3e+02 Score=23.26 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 004744 260 KMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRA 329 (732)
Q Consensus 260 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 329 (732)
.++++.+.+.|+- +......+-.+-...|+.+.|.++++.+. + .+..|...+.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchhhh
Confidence 3455555555432 22222222222224466666666666665 4 233455556666555554433
No 424
>PRK10941 hypothetical protein; Provisional
Probab=46.59 E-value=2.9e+02 Score=26.96 Aligned_cols=60 Identities=12% Similarity=0.018 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004744 209 NSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 209 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 269 (732)
+.+-.+|.+.++++.|..+.+.++... |.+++-+.--.-.|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344556677777777777777776654 555665665566677777777777766666554
No 425
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=46.57 E-value=2.9e+02 Score=27.03 Aligned_cols=116 Identities=10% Similarity=0.135 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHh-cC-ChhHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHcCCCHhHHH
Q 004744 290 FLEEAFQLMNSMSG-KGLKPGVFTYNSLINGLCK-KG-RCDRAKEVLDEMLQ-MGLSPDTATYNTLLVESCRKENMSEAE 365 (732)
Q Consensus 290 ~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~ 365 (732)
.+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666663211 1223355555555555443 11 11122222222221 123455555566666677777777666
Q ss_pred HHHHHHHhC-CCCCCHhHHHHHHHHHHhCCCHHHHHHHHHH
Q 004744 366 EIFCEMSRR-GVAPDIVSFSTLIGIFSRNGQLDRALMYFRE 405 (732)
Q Consensus 366 ~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~ 405 (732)
++++..... +...|...|..++....+.|+..-...+..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 666655443 3444666677777777777766655555543
No 426
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.04 E-value=4.2e+02 Score=28.71 Aligned_cols=171 Identities=15% Similarity=0.016 Sum_probs=99.6
Q ss_pred cChhHHHHHHHhHHhh-CCC-----CCCC---hHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhh-cC
Q 004744 95 DNLQVGQRFIDFIALN-FPN-----VKHS---SMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVST-YS 164 (732)
Q Consensus 95 ~~~~~a~~~f~~~~~~-~~~-----~~~~---~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 164 (732)
+.++++.+-|..+... .|+ +.++ ..+.-.|.+++..+|+.+-|..++.+.+-... ..+...... -.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d----~a~hp~F~~~sg 327 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFD----RALHPNFIPFSG 327 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH----HHhccccccccc
Confidence 3566777777554332 222 2223 45666788889999999999988888763110 000000000 01
Q ss_pred CCC------CchHHHHHH---HHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHc
Q 004744 165 PCG------SNSLIFDLV---IRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLV-KIGWVDLAREVYAEVVRS 234 (732)
Q Consensus 165 ~~~------~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~ 234 (732)
.|. .|-..|-+| +....+.|.++-|.++-.-+....+.-|+.....+|+.|+ +..+|.--+++++.....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 121 222223222 3456678899999998888888877767888888888775 666777777777766432
Q ss_pred C---CCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhC
Q 004744 235 G---IELNVYTLNIMVNALCKDHK---IDSAKMFLCEMEQK 269 (732)
Q Consensus 235 ~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~ 269 (732)
+ ..||-.--.+|+..|.+... -+.|...+.++.+.
T Consensus 408 n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 408 NKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred ccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 2 23444333455566655444 34455555555544
No 427
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.00 E-value=4.2e+02 Score=28.71 Aligned_cols=51 Identities=18% Similarity=0.051 Sum_probs=22.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 004744 531 CKVGEMEKANKLWADMISRKISPNYISYGILINGYC-SMGHVTEAFRLWYEM 581 (732)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~ 581 (732)
.+.|-+..|.+..+-+.+.....|+.....+|+.|+ +..++.--++++++.
T Consensus 353 ~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 353 AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455555555444444433334444444444443 333444444444443
No 428
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=45.90 E-value=3e+02 Score=26.96 Aligned_cols=62 Identities=8% Similarity=0.102 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004744 517 KPDIVTYNTLIDGFCKVGEMEKANKLWADMISR-KISPNYISYGILINGYCSMGHVTEAFRLW 578 (732)
Q Consensus 517 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 578 (732)
.++..+...+++.+++.+++.+-.++|+..... ++..|...|..+|....+.|+..-...+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 445555666667777777777777777666554 44556666777777777777665444433
No 429
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=45.86 E-value=48 Score=19.97 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004744 675 RMHDSELILWRMIEKGLNPDRSTYTTL 701 (732)
Q Consensus 675 ~~~~A~~~~~~~~~~g~~p~~~~~~~l 701 (732)
.++.|..+|++.+. +.|+..+|...
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 35666666776666 55666655443
No 430
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.74 E-value=1.2e+02 Score=29.10 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 664 NVILTGFCRQGRMHDSELILWRMIE----KGLN-PDRSTYTTLINGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 664 ~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 722 (732)
..++..|.+.|++++|.++|+.+.. .|.. +...+...+..++.+.|+.++...+.-+|.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3566667777888888877777753 1222 134556666777778888888777765554
No 431
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.62 E-value=3.2e+02 Score=27.20 Aligned_cols=97 Identities=15% Similarity=0.146 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCC----HH
Q 004744 521 VTYNTLIDGFCKVGEMEKANKLWADMIS----RKISPNYISYGILI-NGYCSMGHVTEAFRLWYEMVGKGIKPT----LV 591 (732)
Q Consensus 521 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~ 591 (732)
..+.....-||+.|+-+.|.+.+.+..+ .|.+.|++.+..-+ -.|....-+.+-++..+.+.++|..-+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455566778888888888877766544 46666666554433 234444445666666667777664333 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004744 592 SCNTIIKGYCRSGDASKADEFLSKMVSE 619 (732)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (732)
+|..+- +....++.+|-.+|-+....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 444333 23345788888888776653
No 432
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.18 E-value=2.8e+02 Score=28.70 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=26.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 004744 460 LCRAKMLTEADDLFNEMLERGVFPDFY--TFTTLIHGHC--KDGNMNKALNLFDIMTQ 513 (732)
Q Consensus 460 ~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~ 513 (732)
+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33455666666666665554 332222 2333333332 24556666666665544
No 433
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=43.88 E-value=1.5e+02 Score=23.04 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004744 204 SINACNSLLGGLVKIGWVDLAREVYAEVVR 233 (732)
Q Consensus 204 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 233 (732)
|....-.+...+...|++++|.+.+-++++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444444444555555444444443
No 434
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.56 E-value=53 Score=32.07 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=23.8
Q ss_pred CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 004744 273 PDTVT-YNTLINAYCREGFLEEAFQLMNSMSGKGLK 307 (732)
Q Consensus 273 p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 307 (732)
||..+ |+..|..-.+.||+++|++++++....|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44444 456777777777777777777777777655
No 435
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=43.53 E-value=6.3e+02 Score=29.97 Aligned_cols=247 Identities=11% Similarity=0.012 Sum_probs=134.2
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004744 448 MDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLI 527 (732)
Q Consensus 448 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 527 (732)
+|+.+-...+..+.+.+..+ +...+..+.+. +|...-...+.++.+.+........+..++.. +|..+-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 56666666667676666533 44444455432 24444444444444433221122233333332 4555555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 004744 528 DGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDAS 607 (732)
Q Consensus 528 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 607 (732)
+.+...+..+ .. .+-+..+ .+|...-...+.++.+.+..+. +.... -.++..+-...+.++...+..+
T Consensus 706 ~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhcccc
Confidence 6665543221 12 2222332 2366555666666666554432 12222 2456666666677777666543
Q ss_pred H-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 608 K-ADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRM 686 (732)
Q Consensus 608 ~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 686 (732)
. +...+..+.. .+|...-...+.++.+.|..+.+...+..+.+ .++..+-...+.++...+. +++...+..+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 2 3455555554 35677777778888888876655555555554 4565555566677777665 5566777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 687 IEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 687 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
++ .|+...-...+.++.+.+.-..+...+..+++
T Consensus 847 L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 847 LT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred hc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 64 55666666666777665333456666666553
No 436
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.36 E-value=96 Score=20.72 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=22.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 004744 181 VQARKLREGSEVFRLLRNKGICFSINACNSLLG 213 (732)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 213 (732)
.+.|...++...+++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456677777777777777777766666665553
No 437
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=43.10 E-value=58 Score=30.34 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=42.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004744 634 GFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD 694 (732)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 694 (732)
+..+.|+.+.|.+++.++.+ +.| ....|..+...-.+.|+++.|.+.+++.++ +.|+
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~--ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE--LDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc--CCcc
Confidence 34567788888888888887 445 456777777777788888888888888887 6664
No 438
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=42.98 E-value=3.6e+02 Score=27.02 Aligned_cols=121 Identities=14% Similarity=0.187 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 004744 569 GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCR------SGDASKADEFLSKMVSEGVDPDS-ISYNTLINGFVREENM 641 (732)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~ 641 (732)
+-++++..+++.....+ .|.+......|.++-. .-++..-..+|+.+.... |++ ++.|--+ +..+..-.
T Consensus 270 ~lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNRAV-Ala~~~Gp 345 (415)
T COG4941 270 ALIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNRAV-ALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehHHH-HHHHhhhH
Confidence 45889999999888887 4788777777765532 235777778888777643 443 4555443 34445556
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 642 DKAFALVSKMENQGLVPDVI-TYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR 695 (732)
Q Consensus 642 ~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 695 (732)
+.++...+-+...+--.+.. .+..-...+.+.|+.++|...|++++. +.++.
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~--La~~~ 398 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA--LARNA 398 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH--hcCCh
Confidence 77788777777642111222 334455667788999999999999988 55554
No 439
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=42.82 E-value=3.5e+02 Score=26.85 Aligned_cols=149 Identities=11% Similarity=0.031 Sum_probs=71.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004744 176 VIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHK 255 (732)
Q Consensus 176 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (732)
++..--+.++..+-++.-..+++.+++ -..+|-.|. --..--..+|.++|.++++.+ ..+|+. -+.+...|.
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~e-CA~AyvLLA--EEEa~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~ 261 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNE-CATAYVLLA--EEEATTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSP 261 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCch-hhhHHHhhh--hhhhhhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhcc
Confidence 333344555566666666666666432 112222111 122334677888888887754 112221 011111121
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCChhHHHHH
Q 004744 256 IDSAKMFLCEMEQKGVYPDTVTYNT--LINAYCREGFLEEAFQLMNSMSGKGL-KPGVFTYNSLINGLCKKGRCDRAKEV 332 (732)
Q Consensus 256 ~~~A~~~~~~~~~~g~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~ 332 (732)
..+.+.++ +.++.+|.. |...--|.|+..+|.+.|+++.+.-. ..-......|+.++....-+.+...+
T Consensus 262 ------~~da~~rR--Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqav 333 (556)
T KOG3807|consen 262 ------QHEAQLRR--DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAV 333 (556)
T ss_pred ------chhhhhhc--ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444 224444432 33333457888888888888765411 00012234566666666656666666
Q ss_pred HHHHHHCC
Q 004744 333 LDEMLQMG 340 (732)
Q Consensus 333 ~~~~~~~g 340 (732)
+.+.-+..
T Consensus 334 LakYDdis 341 (556)
T KOG3807|consen 334 LAKYDDIS 341 (556)
T ss_pred HHhhcccc
Confidence 65554443
No 440
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.60 E-value=1.9e+02 Score=29.65 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 592 SCNTIIKGYCRSGDASKADEFLSKMVSEGV--DPDSISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
.+.-+...|..+|+++.|.+.|.+..+.-. +--...|..+|..-.-.|+|.....+..++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455566666666666666666666544210 11122333444444455666666666666554
No 441
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.52 E-value=1.6e+02 Score=22.71 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=17.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004744 497 KDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEME 537 (732)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 537 (732)
..|+.+.|.+++..+. .| +..|..+++++...|.-+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3455555555555555 32 224445555555555433
No 442
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.34 E-value=3.1e+02 Score=25.88 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHhCCCCC
Q 004744 569 GHVTEAFRLWYEMVGKGIKP 588 (732)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~~ 588 (732)
+++++|.+++.++-+.|+.|
T Consensus 252 ~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 252 RNIDEALKILAELWKLGYSP 271 (333)
T ss_pred ccHHHHHHHHHHHHHcCCCH
Confidence 34444444444444444433
No 443
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=39.63 E-value=67 Score=18.42 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=12.3
Q ss_pred ChHHHHHHHHHHHHCCCccCHHHHHHHH
Q 004744 185 KLREGSEVFRLLRNKGICFSINACNSLL 212 (732)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll 212 (732)
..+.|..+|++++...+ -+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~-~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFP-KSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCC-CChHHHHHHH
Confidence 34555555555554432 2444444333
No 444
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=38.80 E-value=2e+02 Score=24.07 Aligned_cols=45 Identities=7% Similarity=0.237 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 469 ADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQ 513 (732)
Q Consensus 469 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (732)
..+.++.+..-++.|++.....-+.+|.+.+++..|.++|+-+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444455555666666666666666666666666666665544
No 445
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.78 E-value=35 Score=28.69 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=19.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 671 CRQGRMHDSELILWRMIEKGLNPDRSTYTTLIN 703 (732)
Q Consensus 671 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 703 (732)
...|.-.+|..+|++|++.|-.||. |+.|+.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 3445566677777777777766654 444443
No 446
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.67 E-value=4.3e+02 Score=28.32 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=58.1
Q ss_pred HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 573 EAFRLWYEMV-GKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKM 651 (732)
Q Consensus 573 ~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 651 (732)
+..+.++... ..|+..+......++.. ..|+...|+.+++++...+ ....++..+ .++
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~--~~~it~~~V-----------------~~~ 242 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFT--DSKLTGVKI-----------------RKM 242 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhC--CCCcCHHHH-----------------HHH
Confidence 3444444443 34666666666555433 4588888888887765421 111222222 112
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004744 652 ENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRS 696 (732)
Q Consensus 652 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 696 (732)
. |. .+...+..++.+....+....|..++.++.+.|.+|...
T Consensus 243 l--g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 243 I--GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred h--CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 1 22 355556667776666555678999999999998887543
No 447
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.34 E-value=1.5e+02 Score=29.40 Aligned_cols=94 Identities=9% Similarity=0.008 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC---CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 172 IFDLVIRTYVQARKLREGSEVFRLLRNK---GICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVN 248 (732)
Q Consensus 172 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (732)
.|--=++-|.+..++..|...|.+-++. ++..+.+.|+.-..+-.-.|++..|+.=...+++.. |.....+-.=..
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhH
Confidence 3444466778888888888888876654 234455667666666666677777777666666543 333333333344
Q ss_pred HHHhcCChhHHHHHHHHH
Q 004744 249 ALCKDHKIDSAKMFLCEM 266 (732)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~ 266 (732)
++....++.+|....++.
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 445555555555555444
No 448
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=38.33 E-value=2.4e+02 Score=23.68 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 677 HDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHD 719 (732)
Q Consensus 677 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 719 (732)
+++..+|+.|..+|+--. +.-|......+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 446778888888777654 3567777777888888888888775
No 449
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=38.28 E-value=1.9e+02 Score=22.52 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=29.8
Q ss_pred HHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 004744 107 IALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRK 147 (732)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~ 147 (732)
.....|+ +..+...+...+...|++++|.+.+.+++++
T Consensus 14 ~~a~~P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 14 ALAANPD---DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455665 6788888999999999999999999999864
No 450
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.98 E-value=2.2e+02 Score=25.70 Aligned_cols=14 Identities=7% Similarity=0.095 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhC
Q 004744 571 VTEAFRLWYEMVGK 584 (732)
Q Consensus 571 ~~~A~~~~~~~~~~ 584 (732)
.+.|+.+|+.+.+.
T Consensus 85 LESAl~v~~~I~~E 98 (200)
T cd00280 85 LESALMVLESIEKE 98 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 55666666666554
No 451
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=37.69 E-value=2.2e+02 Score=23.06 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHC
Q 004744 186 LREGSEVFRLLRNK 199 (732)
Q Consensus 186 ~~~A~~~~~~~~~~ 199 (732)
.+||..+.+.+...
T Consensus 22 H~EA~tIa~wL~~~ 35 (116)
T PF09477_consen 22 HQEANTIADWLEQE 35 (116)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 44444444444433
No 452
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.21 E-value=3e+02 Score=25.81 Aligned_cols=101 Identities=16% Similarity=0.216 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004744 586 IKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDP---DSISYN--TLINGFVREENMDKAFALVSKMENQGLVPDV 660 (732)
Q Consensus 586 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 660 (732)
+.+...-+|.|+--|.-...+.+|.+.|.. +.|+.| |..+++ .-|....+.|+.++|++....+--.=+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 355555566666555555555555555543 234444 333333 3456678888888888887775432233343
Q ss_pred HHHHHHHH----HHHhcCCHHHHHHHHHHHHH
Q 004744 661 ITYNVILT----GFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 661 ~~~~~l~~----~~~~~g~~~~A~~~~~~~~~ 688 (732)
..+..|.. -..+.|..++|+++++.-+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 23322221 13467788888887776543
No 453
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.93 E-value=1.3e+02 Score=20.12 Aligned_cols=26 Identities=8% Similarity=0.137 Sum_probs=10.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004744 638 EENMDKAFALVSKMENQGLVPDVITY 663 (732)
Q Consensus 638 ~g~~~~A~~~~~~~~~~g~~p~~~~~ 663 (732)
.|-.+++..++++|.+.|+.-+...|
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHH
Confidence 33444444444444444444443333
No 454
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.54 E-value=69 Score=31.33 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=22.6
Q ss_pred CCHH-hHHHHHHHHHcCCCHhHHHHHHHHHHhCCCC
Q 004744 343 PDTA-TYNTLLVESCRKENMSEAEEIFCEMSRRGVA 377 (732)
Q Consensus 343 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 377 (732)
||.. -|+..|....+.|++++|+.++++..+.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4444 3456677777777777777777777776654
No 455
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.16 E-value=2.6e+02 Score=25.29 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHC
Q 004744 536 MEKANKLWADMISR 549 (732)
Q Consensus 536 ~~~A~~~~~~~~~~ 549 (732)
.+.|+.+|+.+.+.
T Consensus 85 LESAl~v~~~I~~E 98 (200)
T cd00280 85 LESALMVLESIEKE 98 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 55677777666654
No 456
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=35.87 E-value=3.9e+02 Score=25.43 Aligned_cols=18 Identities=6% Similarity=-0.163 Sum_probs=11.6
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004744 671 CRQGRMHDSELILWRMIE 688 (732)
Q Consensus 671 ~~~g~~~~A~~~~~~~~~ 688 (732)
-..|+.++|..+.+++.+
T Consensus 180 ei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 180 EILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HTSS-HHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHH
Confidence 356777887777776654
No 457
>PRK09857 putative transposase; Provisional
Probab=35.73 E-value=4.2e+02 Score=26.22 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=22.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004744 602 RSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLV 657 (732)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 657 (732)
+.|+.++-.++++.+.+. .+.......++..-+.+.|.-++++++..+|...|+.
T Consensus 218 ~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred hccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444444444444332 1112222333444444444444444444444444433
No 458
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.17 E-value=1.5e+02 Score=24.09 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 004744 594 NTIIKGYCRSGDASKADEFLSKM 616 (732)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~ 616 (732)
..++.-|...|+.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34555666667777777777665
No 459
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=35.16 E-value=8.3e+02 Score=28.97 Aligned_cols=259 Identities=9% Similarity=-0.048 Sum_probs=157.2
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004744 189 GSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQ 268 (732)
Q Consensus 189 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 268 (732)
++..+-.+++ ++|...-..-+..+.+.+. ..+...+..+++ .++...-...+.++.+.+........+..+.+
T Consensus 622 ~~~~L~~~L~---D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~ 694 (897)
T PRK13800 622 SVAELAPYLA---DPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG 694 (897)
T ss_pred hHHHHHHHhc---CCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc
Confidence 3344444444 3577788888888888776 445666666664 45655555666666665433223344444554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 004744 269 KGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATY 348 (732)
Q Consensus 269 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 348 (732)
. +|..+-...+..+...+.-+ ...+.. +.. .+|...-...+.++.+.+..+. +..... .++..+-
T Consensus 695 ~---~d~~VR~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR 759 (897)
T PRK13800 695 S---PDPVVRAAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVR 759 (897)
T ss_pred C---CCHHHHHHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHH
Confidence 3 46666666677766554221 222333 332 2466666667777776655432 223333 4566666
Q ss_pred HHHHHHHHcCCCHhH-HHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004744 349 NTLLVESCRKENMSE-AEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCR 427 (732)
Q Consensus 349 ~~li~~~~~~g~~~~-A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~ 427 (732)
...+.++...+..+. +...+..+... +|...-...+..+.+.|..+.+...+..+.+. ++..+-...+.++..
T Consensus 760 ~~aa~aL~~~~~~~~~~~~~L~~ll~D---~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~ 833 (897)
T PRK13800 760 IAVAKGLATLGAGGAPAGDAVRALTGD---PDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAG 833 (897)
T ss_pred HHHHHHHHHhccccchhHHHHHHHhcC---CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHh
Confidence 666777777665443 34555555543 47888888899999999876665555555543 466666677778877
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004744 428 NGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLER 479 (732)
Q Consensus 428 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 479 (732)
.+. +++...+..+.+ .++..+-...+.++.+.+....+...+..+.+.
T Consensus 834 l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 834 AAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred ccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 775 456677666665 357777777777787764455677777776663
No 460
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.12 E-value=7e+02 Score=28.11 Aligned_cols=210 Identities=18% Similarity=0.141 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCCCCH---hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHHc
Q 004744 362 SEAEEIFCEMSRRGVAPDI---VSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNV----------LYTIIINGYCRN 428 (732)
Q Consensus 362 ~~A~~~~~~~~~~g~~~~~---~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~----------~~~~li~~~~~~ 428 (732)
++-..++++|..+--.|++ .+...++-.|....+++...++.+.++.. ||.. .|...++---+.
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004744 429 GFVLEALKMRDEMLEKGCVMDVVTYNTILNGLC---------RAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDG 499 (732)
Q Consensus 429 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 499 (732)
|+-++|+...-.+++..-...+..|....+.|- ..+..+.|.+.|++.-+. .|...+-..+...+...|
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhh
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 500 NMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWY 579 (732)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 579 (732)
..-+--.-++.+--. |-..+.+.|.++.-.+.|+-. ....+-.-.+++.+|++.-+
T Consensus 335 ~~Fens~Elq~Igmk-----------Ln~LlgrKG~leklq~YWdV~-------------~y~~asVLAnd~~kaiqAae 390 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMK-----------LNSLLGRKGALEKLQEYWDVA-------------TYFEASVLANDYQKAIQAAE 390 (1226)
T ss_pred hhccchHHHHHHHHH-----------HHHHhhccchHHHHHHHHhHH-------------HhhhhhhhccCHHHHHHHHH
Q ss_pred HHHhCCCCCCHHHHHHHHHHHH
Q 004744 580 EMVGKGIKPTLVSCNTIIKGYC 601 (732)
Q Consensus 580 ~~~~~~~~~~~~~~~~l~~~~~ 601 (732)
.|.+.. +|....-..+-....
T Consensus 391 ~mfKLk-~P~WYLkS~meni~l 411 (1226)
T KOG4279|consen 391 MMFKLK-PPVWYLKSTMENILL 411 (1226)
T ss_pred HHhccC-CceehHHHHHHHHHH
No 461
>PRK09857 putative transposase; Provisional
Probab=34.55 E-value=2.3e+02 Score=28.08 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=25.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004744 636 VREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP 693 (732)
Q Consensus 636 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 693 (732)
...|+.++-.++++.+.+. .++......+++.-+.+.|.-+++.++.++|...|+.+
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3444444444444444432 12222233344444444454445555555555555443
No 462
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.23 E-value=2.4e+02 Score=29.36 Aligned_cols=61 Identities=10% Similarity=0.096 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH------CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 628 YNTLINGFVREENMDKAFALVSKMEN------QGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 628 ~~~li~~~~~~g~~~~A~~~~~~~~~------~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
...|+..++-.|++..|++.++.+.- ..+.+ ...++..++-+|...+++.+|.+.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888888776532 11222 234666777788888888888888887764
No 463
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=34.14 E-value=5.8e+02 Score=26.90 Aligned_cols=88 Identities=9% Similarity=0.016 Sum_probs=45.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 004744 250 LCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRA 329 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 329 (732)
+...|.++.+.+.+....+. +.....+...+++...+.|++++|..+-.-|....++ ++.........--..|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 44456666666665554432 1113334555555566666666666666666555444 333333333333345556666
Q ss_pred HHHHHHHHHC
Q 004744 330 KEVLDEMLQM 339 (732)
Q Consensus 330 ~~~~~~~~~~ 339 (732)
...++++...
T Consensus 411 ~~~wk~~~~~ 420 (831)
T PRK15180 411 YHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhcc
Confidence 6666665544
No 464
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.61 E-value=4.6e+02 Score=25.56 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHH----HHHCCCCCCH
Q 004744 384 STLIGIFSRNGQLDRALMYFRE----MKSAGLVPDN 415 (732)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~l~~~----~~~~~~~~~~ 415 (732)
..++..+.+.|.+.+|+.+... +++.+-+++.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce
Confidence 3466777788888887765543 3444444443
No 465
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=33.57 E-value=2.8e+02 Score=23.03 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----c-CCCCCH-HHHHHHH----HHHHhcCCHHHHHHHHHH
Q 004744 662 TYNVILTGFCRQGRMHDSELILWRMIE----K-GLNPDR-STYTTLI----NGHVSQNNLKEAFRFHDE 720 (732)
Q Consensus 662 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-g~~p~~-~~~~~l~----~~~~~~g~~~~A~~~~~~ 720 (732)
.+..|..++...|++++++.-.++.+. . .+.-|. ..|...+ .++...|+.++|.+.|+.
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 444555556666666655443333321 0 133343 2333222 445667888888777764
No 466
>PF15469 Sec5: Exocyst complex component Sec5
Probab=32.98 E-value=3.7e+02 Score=24.25 Aligned_cols=57 Identities=25% Similarity=0.207 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004744 171 LIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVR 233 (732)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 233 (732)
.++..++..-.+...+..++.++++..- .+....-+.-+.+.|+++.+...|.++..
T Consensus 58 ~~~~pll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 58 SVFKPLLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3444455555555566666666665542 33444566677788888888888877754
No 467
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.71 E-value=4.4e+02 Score=24.99 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=41.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHhcCCHHHH
Q 004744 577 LWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSE-G-----------VDPDSISYNTLINGFVREENMDKA 644 (732)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----------~~~~~~~~~~li~~~~~~g~~~~A 644 (732)
+.+-....+++-+...+..++ +...|+..+|+..++.-... | -.|.+.....++..| ..+++++|
T Consensus 181 l~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A 257 (333)
T KOG0991|consen 181 LLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEA 257 (333)
T ss_pred HHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHH
Confidence 333333344444444444433 34567777777666654321 1 134444444444433 34566777
Q ss_pred HHHHHHHHHCCCCCCH
Q 004744 645 FALVSKMENQGLVPDV 660 (732)
Q Consensus 645 ~~~~~~~~~~g~~p~~ 660 (732)
.+.+.++-+.|+.|..
T Consensus 258 ~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 258 LKILAELWKLGYSPED 273 (333)
T ss_pred HHHHHHHHHcCCCHHH
Confidence 7777776666666543
No 468
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.68 E-value=3.1e+02 Score=27.16 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 004744 246 MVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGR 325 (732)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 325 (732)
++....+.+++.+....+..+. .+..-...+..+...|++..|++++.+..+ -...+..+-..-.-..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred hhHHHHHHHHHHHCC-----CCCCHHhHHHHHHHHHcCCCHhHHHHHHHH
Q 004744 326 CDRAKEVLDEMLQMG-----LSPDTATYNTLLVESCRKENMSEAEEIFCE 370 (732)
Q Consensus 326 ~~~A~~~~~~~~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (732)
+++-.....++++.. ..-|...|..+..+|.-.|+...+.+-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 469
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.86 E-value=98 Score=22.40 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 004744 413 PDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLC 461 (732)
Q Consensus 413 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 461 (732)
|....++.++..+++..-+++++..+.+....|.. +..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 34445555555555555555555555555555442 4444444444333
No 470
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.73 E-value=4.4e+02 Score=24.77 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=12.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHh
Q 004744 281 LINAYCREGFLEEAFQLMNSMS 302 (732)
Q Consensus 281 li~~~~~~g~~~~A~~~~~~m~ 302 (732)
-|....+.|++++|++..+...
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhC
Confidence 3444556666666666655543
No 471
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=31.56 E-value=7e+02 Score=27.02 Aligned_cols=103 Identities=17% Similarity=0.086 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHH
Q 004744 207 ACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVY--PDTVTYNTLINA 284 (732)
Q Consensus 207 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~li~~ 284 (732)
.+...+.++...+...+++.+.++... -...|..++..+...|....|...+-+-.+.+-+ -.....-+++..
T Consensus 305 ~~~r~v~~l~~a~~~~e~i~~~~~ea~-----~~~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~el 379 (587)
T COG4715 305 VVDREVPALASAGLQHEAIRLCEREAE-----GPGSYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLAEL 379 (587)
T ss_pred HHHHhhhhhccchhhHHHHHHHHHHhc-----CcccHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHHHH
Confidence 344455566666666666666555432 2234555566666666666665554443332211 122334556667
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 004744 285 YCREGFLEEAFQLMNSMSGKGLKPGVFTYNSL 316 (732)
Q Consensus 285 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 316 (732)
+...|++-.|.++-+..... .|+...|.-|
T Consensus 380 ~~~~g~~~~a~~Laq~~F~r--~p~~~sy~~l 409 (587)
T COG4715 380 KEEEGRLGFAAELAQEAFFR--TPNGRSYLGL 409 (587)
T ss_pred HHhhcchHHHHHHHHHHccC--CCCccchhhH
Confidence 77777777777776665554 3444444433
No 472
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.47 E-value=5.4e+02 Score=25.71 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=77.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH
Q 004744 551 ISPNYISYGILINGYCSMGHVTEAFRLWYEMVGK-GIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSE----GVDPDS 625 (732)
Q Consensus 551 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~ 625 (732)
+..|...++.|... +..++++--+..++..+. |-.--...+.....-||+-|+.+.|.+.+++..+. |.+.|.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34455555555432 222333333333343332 22222345566677788888888888887766543 666666
Q ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHH
Q 004744 626 ISYNT-LINGFVREENMDKAFALVSKMENQGLVPDV----ITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYT 699 (732)
Q Consensus 626 ~~~~~-li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~ 699 (732)
..+.. +.-.|....-+.+-++-.+.+.+.|-.-+. .+|..+- |....++.+|-.+|-..+.. +.. ....|.
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT-FtS~El~~Y~ 220 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST-FTSYELMSYE 220 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc-ccceecccHH
Confidence 54433 223333444456666666667776655543 2443332 22345677777777665531 111 234555
Q ss_pred HHHH
Q 004744 700 TLIN 703 (732)
Q Consensus 700 ~l~~ 703 (732)
.++.
T Consensus 221 ~~v~ 224 (393)
T KOG0687|consen 221 TFVR 224 (393)
T ss_pred HHHH
Confidence 5554
No 473
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.35 E-value=4.1e+02 Score=24.28 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=11.3
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004744 672 RQGRMHDSELILWRMIE 688 (732)
Q Consensus 672 ~~g~~~~A~~~~~~~~~ 688 (732)
+.|+++.|.++++-|.+
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45777777777666643
No 474
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=31.25 E-value=5.1e+02 Score=29.28 Aligned_cols=86 Identities=16% Similarity=0.125 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---C----------CCHHHHHHHHHHHH
Q 004744 606 ASKADEFLSKMVS-EGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGL---V----------PDVITYNVILTGFC 671 (732)
Q Consensus 606 ~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~---~----------p~~~~~~~l~~~~~ 671 (732)
.++..+.+.+..+ .|+..+......++... .|++..|+.+++++...|. . .+......++.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 4555666655554 47777777777776544 6999999999998876431 1 12222334455544
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC
Q 004744 672 RQGRMHDSELILWRMIEKGLNPD 694 (732)
Q Consensus 672 ~~g~~~~A~~~~~~~~~~g~~p~ 694 (732)
.|+...++.+++++.+.|+.+.
T Consensus 258 -~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 -NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred -cCCHHHHHHHHHHHHHhCCCHH
Confidence 4788888889998888777654
No 475
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=31.20 E-value=8.5e+02 Score=27.88 Aligned_cols=435 Identities=11% Similarity=0.008 Sum_probs=0.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH---hcCChhH
Q 004744 252 KDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLC---KKGRCDR 328 (732)
Q Consensus 252 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---~~g~~~~ 328 (732)
..+.-+.=+.-+++-...... +...+..||..+-+.|++++...--..|.+. .+.++..|...+.... ..+...+
T Consensus 91 ~~~~~~~ei~t~~ee~ai~~y-~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~ 168 (881)
T KOG0128|consen 91 NEGGGNQEIRTLEEELAINSY-KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKE 168 (881)
T ss_pred ccccchhHHHHHHHHhccccc-chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhH
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCC--------------HhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCC
Q 004744 329 AKEVLDEMLQMGLSPDTATYNTLLVESCRKEN--------------MSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNG 394 (732)
Q Consensus 329 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--------------~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 394 (732)
+..+|++.+.. .-++..|.-.+.-+...+. ++.|++.+..-...|.. ....|.-+=..|..+-
T Consensus 169 v~~~~ekal~d--y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~-~we~~~E~e~~~l~n~ 245 (881)
T KOG0128|consen 169 VEELFEKALGD--YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAA-IWEMYREFEVTYLCNV 245 (881)
T ss_pred HHHHHHHHhcc--cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHH-HHHHHHHHHHHHHHhH
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 395 QLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFN 474 (732)
Q Consensus 395 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 474 (732)
..++...+|..-...+ .|..+-+.-..--.+...++....-.+.+... ...-...|.
T Consensus 246 ~~~qv~a~~~~el~~~--~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~---------------------l~~~~~~~e 302 (881)
T KOG0128|consen 246 EQRQVIALFVRELKQP--LDEDTRGWDLSEQSKAHVYDVETKKLDDALKN---------------------LAKILFKFE 302 (881)
T ss_pred HHHHHHHHHHHHHhcc--chhhhhHHHHHHHHhcchHHHHhccHHHHHHH---------------------HHHHHHHHH
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCC
Q 004744 475 EMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGF-CKVGEMEKANKLWADMISRKISP 553 (732)
Q Consensus 475 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~ 553 (732)
+..+.... -...|..++..+...|++-.-..+++++... ...+...|....... ...+-.+.+...+......
T Consensus 303 ~~~q~~~~-~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E-~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~---- 376 (881)
T KOG0128|consen 303 RLVQKEPI-KDQEWMSYIDFEKKSGDPVRIQLIEERAVAE-MVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS---- 376 (881)
T ss_pred HHhhhhHH-HHHHHHHHHHHHHhcCCchHHHHHHHHHHHh-ccccHHHHhhhhhhcccccccccccccccchhhcC----
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHCC
Q 004744 554 NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGD-------------ASKADEFLSKMVSEG 620 (732)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~~~~~~ 620 (732)
.+.+....-.+.....+..+-.+++..-....+......++....-..++++ +..|...|.......
T Consensus 377 cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~ 456 (881)
T KOG0128|consen 377 CPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQ 456 (881)
T ss_pred CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHH
Q 004744 621 VDPDSISYNTLINGFV-REENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP--DRST 697 (732)
Q Consensus 621 ~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~ 697 (732)
..+............. -.++++.|+.+++.....|..-=...|...+..=...|+...|+.+++++...-..| -..+
T Consensus 457 ~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev 536 (881)
T KOG0128|consen 457 LDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEV 536 (881)
T ss_pred hhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHH
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 004744 698 YTTLINGHVSQNNLKEAFRFHDE 720 (732)
Q Consensus 698 ~~~l~~~~~~~g~~~~A~~~~~~ 720 (732)
+..+...-...|.++.......+
T Consensus 537 ~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 537 LEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred HHHHHHHHhccccHHHHhhhHHh
No 476
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=31.05 E-value=6.4e+02 Score=26.42 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004744 383 FSTLIGIFSRNGQLDRALMYFREMKS 408 (732)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~l~~~~~~ 408 (732)
.|-.+.-|...|+..+|.+..+++..
T Consensus 217 In~~l~eyv~~getrea~rciR~L~v 242 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGV 242 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCC
Confidence 34556667788888888887777643
No 477
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=30.90 E-value=2.9e+02 Score=22.43 Aligned_cols=27 Identities=22% Similarity=0.597 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004744 277 TYNTLINAYCREGFLEEAFQLMNSMSG 303 (732)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 303 (732)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 367777777777777777777777765
No 478
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.82 E-value=6.2e+02 Score=26.20 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGI--CFSINACNSLLGGLVKIGWVDLAREVYAEVVR 233 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 233 (732)
-..+.-+...|..+|+++.|++.|.+.++.-. .-....|..++..-.-.|++.....+-.++.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34577788899999999999999998665311 11233455556555666777666666665544
No 479
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=30.81 E-value=7.8e+02 Score=29.77 Aligned_cols=153 Identities=15% Similarity=0.104 Sum_probs=88.4
Q ss_pred hcCCHHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhCCCCCCHHHHHHHHH
Q 004744 532 KVGEMEKANK------LWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEM-------VGKGIKPTLVSCNTIIK 598 (732)
Q Consensus 532 ~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~l~~ 598 (732)
..|.+.+|.+ ++......-.++....|..+...+.+.|+.++|+..-... ....-+.+...|..+..
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 3445555555 5554443333445667788888888889998888765433 22222333455666665
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC--CCHHHHH
Q 004744 599 GYCRSGDASKADEFLSKMVSE-----GV-DPD-SISYNTLINGFVREENMDKAFALVSKMENQ-----GLV--PDVITYN 664 (732)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g~~--p~~~~~~ 664 (732)
.+...++...|...+.+.... |. .|. ..+++.+-..+-..++++.|+++.+.+... |.+ +...++.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~ 1103 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYH 1103 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHH
Confidence 666666777777777666543 21 333 333344433344457888888888887662 111 2345566
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 004744 665 VILTGFCRQGRMHDSELILW 684 (732)
Q Consensus 665 ~l~~~~~~~g~~~~A~~~~~ 684 (732)
.+...+...|++..|....+
T Consensus 1104 ~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1104 ALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHhhhHHHHHHHHHHh
Confidence 66666666666666554433
No 480
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=30.19 E-value=1.6e+02 Score=29.55 Aligned_cols=68 Identities=19% Similarity=0.155 Sum_probs=54.8
Q ss_pred cCC-HHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004744 638 EEN-MDKAFALVSKMENQGLVPDV----ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVS 707 (732)
Q Consensus 638 ~g~-~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 707 (732)
.|- .+++..+++.++. .-|+. .-|-+++......|.+++.+.+|++++..|-.|-...-..+++.+-.
T Consensus 115 eGcp~eei~~~L~~li~--~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~ 187 (353)
T PF15297_consen 115 EGCPKEEILATLSDLIK--NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKM 187 (353)
T ss_pred cCCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 443 5788999999998 35665 35778888888999999999999999999999977777777777653
No 481
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=29.83 E-value=1.2e+02 Score=18.77 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 004744 697 TYTTLINGHVSQNNLKEAFRFHD 719 (732)
Q Consensus 697 ~~~~l~~~~~~~g~~~~A~~~~~ 719 (732)
.+..++..+...|++++|.+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 35566777888899999988844
No 482
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.45 E-value=5.8e+02 Score=25.79 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=53.1
Q ss_pred cCC-HHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004744 603 SGD-ASKADEFLSKMVSEGVDPD----SISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFC 671 (732)
Q Consensus 603 ~g~-~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 671 (732)
.|- .++...++..++.. -|+ ...|-+++......|.+++++.+|++++..|-.|-...-..++..+-
T Consensus 115 eGcp~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 115 EGCPKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred cCCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 454 56888899999874 355 35678888999999999999999999999998887666666666654
No 483
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=28.79 E-value=3.5e+02 Score=22.71 Aligned_cols=58 Identities=24% Similarity=0.172 Sum_probs=39.3
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH-HHHHHHHHHHHHcCChHHHHHHHH
Q 004744 166 CGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSI-NACNSLLGGLVKIGWVDLAREVYA 229 (732)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~ 229 (732)
.+.-..+|-..++.+ +++.++|..|...|+-... .-|......+-..|++.+|.++|+
T Consensus 65 D~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 65 DPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334455666666543 5578889999887765443 345666777778888888888876
No 484
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=28.02 E-value=2.1e+02 Score=27.49 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004744 257 DSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMS 302 (732)
Q Consensus 257 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 302 (732)
++|..+++.-... ..+..+...+..++...|+-+.+.++++.+.
T Consensus 116 ~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 116 NKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp HHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 3455555444332 2355554444455556666666666666654
No 485
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=27.95 E-value=8.7e+02 Score=29.43 Aligned_cols=156 Identities=16% Similarity=0.125 Sum_probs=98.2
Q ss_pred HHhcCCHHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCC--CHHHHHHH
Q 004744 565 YCSMGHVTEAFR------LWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS-----EGVDP--DSISYNTL 631 (732)
Q Consensus 565 ~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~--~~~~~~~l 631 (732)
....|.+.+|.+ ++......-.++....|..+...+.+.|+.++|+..-.+..- .|..+ +...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344566666666 555433332355567788888889999999999887665431 13222 24456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC--CHHH
Q 004744 632 INGFVREENMDKAFALVSKMEN-----QG-LVPDVI-TYNVILTGFCRQGRMHDSELILWRMIEK-----GLNP--DRST 697 (732)
Q Consensus 632 i~~~~~~g~~~~A~~~~~~~~~-----~g-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p--~~~~ 697 (732)
.-.+...+....|...+.+... .| ..|... +.+.+-..+...++++.|.++++.+... |..+ ...+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 5555666788888888777765 22 245544 3344443444558899999999988752 2121 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 004744 698 YTTLINGHVSQNNLKEAFRFHDE 720 (732)
Q Consensus 698 ~~~l~~~~~~~g~~~~A~~~~~~ 720 (732)
|..+.+.+...|++..|....+.
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhh
Confidence 77788888888887776655443
No 486
>PRK13342 recombination factor protein RarA; Reviewed
Probab=27.81 E-value=7.3e+02 Score=26.06 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=14.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH
Q 004744 463 AKMLTEADDLFNEMLERGVFPDFY 486 (732)
Q Consensus 463 ~~~~~~A~~~~~~~~~~~~~~~~~ 486 (732)
.++.+.|...+..|.+.|..|...
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 356666666666666666554433
No 487
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.79 E-value=5.8e+02 Score=24.91 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=32.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHhcCChhHHHH
Q 004744 210 SLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLN-------IMVNALCKDHKIDSAKM 261 (732)
Q Consensus 210 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~A~~ 261 (732)
-+.+-.++.+++++|...|.+++..|+..+..+.| .+...|...|+...-.+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 34556667778888888888887777776666544 23344455555444333
No 488
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=27.79 E-value=7e+02 Score=25.83 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--------HHHHcCCHHHHHHHHHHHHHC-----C
Q 004744 554 NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIK--------GYCRSGDASKADEFLSKMVSE-----G 620 (732)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~g~~~~A~~~~~~~~~~-----~ 620 (732)
+...+-.++-.+....++.+|..+-+.....-...|..+++.+.. .|...|+...-..++...... .
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004744 621 VDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTT 700 (732)
Q Consensus 621 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 700 (732)
-....+..|+|+..|...+.++.|.++..+.. .|+...-+...+-+.-.|++....--+..+.+ +
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~----~pe~~snne~ARY~yY~GrIkaiqldYssA~~-----------~ 269 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSV----YPEAASNNEWARYLYYLGRIKAIQLDYSSALE-----------Y 269 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhccc----CccccccHHHHHHHHHHhhHHHhhcchhHHHH-----------H
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004744 701 LINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 701 l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
++.+..++-+ ..|+.+.+...+
T Consensus 270 ~~qa~rkapq-~~alGf~q~v~k 291 (493)
T KOG2581|consen 270 FLQALRKAPQ-HAALGFRQQVNK 291 (493)
T ss_pred HHHHHHhCcc-hhhhhHHHHHHH
No 489
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.78 E-value=2.6e+02 Score=26.89 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=10.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 004744 596 IIKGYCRSGDASKADEFLSKM 616 (732)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~ 616 (732)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555544
No 490
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.75 E-value=1.1e+02 Score=22.23 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 004744 273 PDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLC 321 (732)
Q Consensus 273 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 321 (732)
|....++.++..+++..-+++++..+.++...|.- +..+|.--++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 34445555566666655566666666666555542 4444444444443
No 491
>KOG1874 consensus KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4 [Transcription]
Probab=27.17 E-value=1.2e+03 Score=28.27 Aligned_cols=107 Identities=11% Similarity=0.118 Sum_probs=56.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHH--HHHHCCC
Q 004744 124 MIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFR--LLRNKGI 201 (732)
Q Consensus 124 l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~ 201 (732)
|+.+|......+.-...+..++-.....++.+++.++..+...+..-..|-+|+..+-.-.++--++--|. ...+...
T Consensus 79 L~~~~~~s~~~~a~lk~ik~liG~fnLDpnRv~DVILevfe~~~~~~~~FiaLl~~~~s~~~~a~~ilgFkf~~Yqe~~~ 158 (1477)
T KOG1874|consen 79 LILAYYSSSKSSAYLKIIKHLIGKFNLDPNRVLDVILEVFEQFPTEYDFFIALLRKSDSWPMIACNILGFKFSFYQEEVD 158 (1477)
T ss_pred HHHHhcCcchHHHHHHHHHHHhcccCCCchHHHHHHHHHHHccchHHHHHHHHHHhhccHHHHHHHHhccchheeccccc
Confidence 33444444333333455555665666778888888888777666555566666665533322111111111 1111112
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004744 202 CFSINACNSLLGGLVKIGWVDLAREVYAEV 231 (732)
Q Consensus 202 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 231 (732)
.++...+..|...+.+.+-++ ...+|..+
T Consensus 159 ~e~p~~ly~lta~Llk~~fIn-l~si~~~l 187 (1477)
T KOG1874|consen 159 KETPESLYDLTAILLKNEFIN-LYSIYDHL 187 (1477)
T ss_pred CCChHHHHHHHHHHHHhcccc-HHHHHHHh
Confidence 456777777777777776543 23444444
No 492
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=27.07 E-value=6.4e+02 Score=25.14 Aligned_cols=105 Identities=11% Similarity=0.158 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHH
Q 004744 569 GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISY--NTLINGFVREENMDKAFA 646 (732)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~ 646 (732)
.-+.+|.++|++..+.+ ..+|+. -..+.+.|...+ .+.+. ..+..+| ..|..+..+.|+..+|.+
T Consensus 230 ~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~~~d------a~~rR--Dtnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 230 TTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSPQHE------AQLRR--DTNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhccchh------hhhhc--ccchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 34667888888877653 222321 111222222222 22232 2344444 345555567899999999
Q ss_pred HHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 647 LVSKMENQGLVPDV---ITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 647 ~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
.++.+.+. .|-. .+...|+.+|....-+.+...++-+--+
T Consensus 297 ~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 297 IMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99988763 2321 2345677787776666666666655544
No 493
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=26.86 E-value=2.6e+02 Score=29.50 Aligned_cols=177 Identities=15% Similarity=0.219 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHHcC-CHH
Q 004744 533 VGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVS----CNTIIKGYCRSG-DAS 607 (732)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g-~~~ 607 (732)
..++++|++..++..+.+.+ ...|-...|.++|.++.+.|+.||..| ....+.+|+-.| .++
T Consensus 207 ~~~ldeal~~~~~a~~~~~~-------------~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~e 273 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKP-------------ISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVE 273 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCc-------------eEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHH
Q ss_pred HHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------
Q 004744 608 KADEFLSKMVSE---GVDPDSISYNTLINGFVREEN--MDKAFALVSKMENQGLVPDVITYNVILTGFCR---------- 672 (732)
Q Consensus 608 ~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---------- 672 (732)
++.++..+=.+. -...+...--..+..+.+.|- +|-.-.+..++.+.|.+ +...|-..+.+|.+
T Consensus 274 e~~~lr~~dp~~~~~~~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~~r~~a~~aG~~-~aF~~PgfV~~~irplF~~G~GPF 352 (545)
T TIGR01228 274 DADKLRQEEPEAYVKAAKQSMAKHVRAMLAFQKQGSVTFDYGNNIRQVAKEEGVE-DAFDFPGFVPAYIRPLFCRGKGPF 352 (545)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHcCcc-ccCCCCCchhhhcchhhhCcCCCc
Q ss_pred -----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------HHhcCCHHHHHHHHHHHHHCC
Q 004744 673 -----QGRMHDSELILWRMIEKGLNPDRSTYTTLING---------------HVSQNNLKEAFRFHDEMLQRG 725 (732)
Q Consensus 673 -----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~---------------~~~~g~~~~A~~~~~~m~~~g 725 (732)
+|+.++-.+.=+.+.+ +-|+.......++. |.-.|.-.++-..|++|+++|
T Consensus 353 RWvaLSGdpeDi~~TD~~~~e--~~~~~~~~~~WI~~A~e~~~fqGlpARI~wlg~~eR~~~~l~fNe~V~~G 423 (545)
T TIGR01228 353 RWVALSGDPADIYRTDAAVKE--LFPEDAHLHRWIDMAQERVSFQGLPARICWLGYGERAKLGLAINEMVRSG 423 (545)
T ss_pred eeEecCCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHhcCcccCCchhhhhcCccHHHHHHHHHHHHHHcC
No 494
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=26.65 E-value=9.8e+02 Score=27.16 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CC----------CCHHHHHHHHHHHH
Q 004744 571 VTEAFRLWYEMVG-KGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEG---VD----------PDSISYNTLINGFV 636 (732)
Q Consensus 571 ~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~----------~~~~~~~~li~~~~ 636 (732)
.++....+....+ .|+..+......++... .|+...|+.+++++...| +. .+......|++++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 4455555555444 57777777777776554 699999999999887643 11 12222334445444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC
Q 004744 637 REENMDKAFALVSKMENQGLVPD 659 (732)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~g~~p~ 659 (732)
.++...++.+++++...|..+.
T Consensus 258 -~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 -NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred -cCCHHHHHHHHHHHHHhCCCHH
Confidence 5899999999999999876554
No 495
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=26.62 E-value=4.6e+02 Score=23.28 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=6.7
Q ss_pred CChHHHHHHHHHHHH
Q 004744 184 RKLREGSEVFRLLRN 198 (732)
Q Consensus 184 g~~~~A~~~~~~~~~ 198 (732)
...+++.++++...+
T Consensus 48 ~np~~~~~~l~~~~~ 62 (164)
T PF07840_consen 48 NNPEKVLEILAELDK 62 (164)
T ss_dssp H-HHHHHHHHHCCTT
T ss_pred HCHHHHHHHHHHhhh
Confidence 344555555554443
No 496
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.53 E-value=1.6e+02 Score=27.65 Aligned_cols=60 Identities=20% Similarity=0.146 Sum_probs=49.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004744 599 GYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVI 661 (732)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 661 (732)
+..+.|+.+.|.+++.+..+.- +-....|-.+...-.+.|+++.|.+-+++..+ +.|+..
T Consensus 4 ~~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~--ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE--LDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHc--CCcccc
Confidence 4567899999999999998742 23467888899999999999999999999998 566543
No 497
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=26.17 E-value=3.5e+02 Score=26.69 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCHHHH
Q 004744 610 DEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCR----------QGRMHDS 679 (732)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----------~g~~~~A 679 (732)
.++++.+.+.++.|.-.++..+.-.+...=.+.+.+.+|+.+.. |+.-|..|+..||. .|++.--
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred HHHHHH
Q 004744 680 ELILWR 685 (732)
Q Consensus 680 ~~~~~~ 685 (732)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
No 498
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=26.13 E-value=1.2e+03 Score=27.85 Aligned_cols=134 Identities=15% Similarity=0.114 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004744 569 GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSG--DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFA 646 (732)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 646 (732)
+++..-.+.+.+.... ......-+..++.+|.+.+ ++++|+....++.+. +...-...+...+ -+-++-+
T Consensus 792 ~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~---fLvDvn~ 863 (928)
T PF04762_consen 792 SKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLC---FLVDVNK 863 (928)
T ss_pred cHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHhe---eeccHHH
Confidence 4455555555544432 1223444567778888887 788888888888764 1111111111111 1122333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 647 LVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEM 721 (732)
Q Consensus 647 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 721 (732)
+|+.+... -|.. -+++-|-..+.|..|=+-+++++.+ ++|+..-| -| =...|++++|++.+.++
T Consensus 864 Ly~~ALG~---YDl~--Lal~VAq~SQkDPKEYLPfL~~L~~--l~~~~rry--~I--D~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 864 LYDVALGT---YDLE--LALMVAQQSQKDPKEYLPFLQELQK--LPPLYRRY--KI--DDHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHHhhh---cCHH--HHHHHHHHhccChHHHHHHHHHHHh--CChhheee--eH--hhhhCCHHHHHHHHHhh
Confidence 33333321 0111 1233333445677777777777766 55543211 12 23458899998887664
No 499
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.70 E-value=3.6e+02 Score=23.28 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004744 314 NSLINGLCKKGRCDRAKEVLDEMLQMGLSP 343 (732)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 343 (732)
..++..+...++.-.|.++++++.+.+...
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~i 53 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGI 53 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCC
Confidence 334445555545555555555555544333
No 500
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=25.60 E-value=1.9e+02 Score=21.96 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=20.5
Q ss_pred cCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 673 QGRMHDSELILWRMIE---KGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 673 ~g~~~~A~~~~~~~~~---~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 722 (732)
.|+.++|..+|++.++ .|+.-... ..+..-.|++|.++-++|.
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~~-------~~~~~~~w~~ar~~~~Km~ 66 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPVP-------SAGVGSQWERARRLQQKMK 66 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCC-------cccccHHHHHHHHHHHHHH
Confidence 3566666666665442 22221111 1233344666666666664
Done!