Query 004744
Match_columns 732
No_of_seqs 859 out of 3825
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 04:24:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.1E-42 7.2E-47 384.9 43.0 488 204-706 83-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-41 4.7E-46 378.4 41.2 491 219-729 67-582 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 5.1E-28 1.7E-32 253.2 49.2 380 176-566 5-384 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 7E-28 2.4E-32 252.2 49.7 383 124-534 5-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 3.2E-29 1.1E-33 266.2 24.9 203 190-392 10-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 3.8E-29 1.3E-33 265.6 24.6 202 226-427 11-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.5E-24 5E-29 236.2 41.1 453 205-695 6-482 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.4E-24 1.2E-28 233.3 42.4 454 170-661 6-483 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.6E-23 9E-28 222.1 41.5 309 162-479 18-358 (450)
10 3fp2_A TPR repeat-containing p 99.9 6.7E-23 2.3E-27 224.4 41.9 433 170-653 25-490 (537)
11 3fp2_A TPR repeat-containing p 99.9 3.3E-23 1.1E-27 226.9 39.4 445 205-694 25-494 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 2E-22 6.7E-27 215.3 42.0 319 187-514 9-358 (450)
13 1xi4_A Clathrin heavy chain; a 99.9 2.7E-17 9.4E-22 184.1 62.2 420 79-575 949-1375(1630)
14 2xm6_A Protein corresponding t 99.9 6E-18 2.1E-22 182.2 52.6 363 258-653 25-431 (490)
15 3ieg_A DNAJ homolog subfamily 99.9 2.1E-19 7.3E-24 185.2 39.5 332 169-531 2-351 (359)
16 1xi4_A Clathrin heavy chain; a 99.9 6.3E-17 2.2E-21 181.2 60.9 413 78-569 980-1415(1630)
17 3ieg_A DNAJ homolog subfamily 99.9 3E-19 1E-23 184.1 39.3 303 117-444 2-335 (359)
18 2xm6_A Protein corresponding t 99.9 1.7E-17 5.9E-22 178.7 53.3 351 309-689 38-432 (490)
19 2ooe_A Cleavage stimulation fa 99.9 1.5E-17 5.3E-22 181.0 46.0 431 166-653 9-491 (530)
20 2ooe_A Cleavage stimulation fa 99.9 5.4E-17 1.8E-21 176.7 48.4 430 105-584 3-492 (530)
21 3hym_B Cell division cycle pro 99.9 9.1E-19 3.1E-23 178.2 32.2 291 414-712 21-322 (330)
22 3hym_B Cell division cycle pro 99.8 1.8E-18 6.2E-23 175.9 32.0 288 166-460 18-314 (330)
23 1fch_A Peroxisomal targeting s 99.8 9.1E-19 3.1E-23 181.3 24.8 262 452-722 66-357 (368)
24 1b89_A Protein (clathrin heavy 99.8 1.3E-17 4.3E-22 168.3 27.6 281 182-506 15-303 (449)
25 1fch_A Peroxisomal targeting s 99.8 4E-18 1.4E-22 176.5 25.0 307 354-687 34-357 (368)
26 1b89_A Protein (clathrin heavy 99.8 8.7E-19 3E-23 176.7 18.6 283 129-472 14-304 (449)
27 4g1t_A Interferon-induced prot 99.8 9.3E-17 3.2E-21 172.4 35.9 388 309-730 50-466 (472)
28 4eqf_A PEX5-related protein; a 99.8 5.5E-18 1.9E-22 175.2 24.2 261 453-721 68-353 (365)
29 4eqf_A PEX5-related protein; a 99.8 1.4E-17 4.8E-22 172.1 24.8 235 169-408 64-309 (365)
30 3cv0_A Peroxisome targeting si 99.8 3.5E-17 1.2E-21 166.2 25.2 234 169-408 20-268 (327)
31 4g1t_A Interferon-induced prot 99.8 2.5E-16 8.4E-21 169.1 33.0 394 115-550 48-460 (472)
32 3cv0_A Peroxisome targeting si 99.8 2.4E-17 8.3E-22 167.4 23.7 267 117-406 20-312 (327)
33 3mkr_A Coatomer subunit epsilo 99.8 1.1E-16 3.8E-21 158.6 25.6 275 422-716 6-286 (291)
34 3mkr_A Coatomer subunit epsilo 99.8 4.3E-16 1.5E-20 154.4 27.6 256 388-661 7-269 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.7 5.2E-18 1.8E-22 184.3 9.6 117 205-321 127-247 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.8E-17 6E-22 180.2 12.2 153 166-323 123-285 (1134)
37 2pl2_A Hypothetical conserved 99.7 3.2E-15 1.1E-19 141.4 22.0 200 167-372 2-212 (217)
38 2pl2_A Hypothetical conserved 99.7 3.9E-15 1.3E-19 140.8 22.0 199 116-337 3-212 (217)
39 3e4b_A ALGK; tetratricopeptide 99.7 4.7E-15 1.6E-19 157.0 24.8 188 452-655 178-388 (452)
40 3e4b_A ALGK; tetratricopeptide 99.7 8.7E-15 3E-19 154.9 25.9 188 382-585 178-388 (452)
41 2h6f_A Protein farnesyltransfe 99.7 2.3E-14 7.7E-19 146.8 26.9 251 166-425 93-363 (382)
42 2h6f_A Protein farnesyltransfe 99.7 2.3E-14 8E-19 146.7 26.7 249 118-391 97-364 (382)
43 3uq3_A Heat shock protein STI1 99.7 2E-14 6.9E-19 140.1 25.0 225 450-688 5-235 (258)
44 3uq3_A Heat shock protein STI1 99.7 3.2E-14 1.1E-18 138.7 26.3 223 486-723 6-235 (258)
45 1ouv_A Conserved hypothetical 99.6 7.2E-13 2.5E-17 130.4 33.4 222 449-688 5-250 (273)
46 3u4t_A TPR repeat-containing p 99.6 7.5E-14 2.6E-18 137.3 25.2 249 452-706 5-266 (272)
47 1ouv_A Conserved hypothetical 99.6 6.3E-13 2.2E-17 130.8 31.7 225 168-410 4-252 (273)
48 4e6h_A MRNA 3'-END-processing 99.6 6.7E-12 2.3E-16 137.1 42.6 216 435-653 329-569 (679)
49 3u4t_A TPR repeat-containing p 99.6 9.9E-14 3.4E-18 136.5 25.4 235 119-374 4-250 (272)
50 2ho1_A Type 4 fimbrial biogene 99.6 2.6E-13 8.8E-18 131.8 27.3 201 170-374 37-238 (252)
51 4e6h_A MRNA 3'-END-processing 99.6 2E-11 7E-16 133.3 44.1 475 182-702 44-581 (679)
52 2q7f_A YRRB protein; TPR, prot 99.6 5.9E-14 2E-18 135.4 21.4 201 117-339 22-222 (243)
53 2vq2_A PILW, putative fimbrial 99.6 4.4E-13 1.5E-17 127.4 27.2 205 167-374 5-211 (225)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.3E-14 1.8E-18 138.6 20.9 245 462-718 17-269 (275)
55 2q7f_A YRRB protein; TPR, prot 99.6 7.2E-14 2.5E-18 134.8 21.1 213 168-386 21-233 (243)
56 1xnf_A Lipoprotein NLPI; TPR, 99.6 4E-14 1.4E-18 139.5 19.4 248 181-438 16-269 (275)
57 2ho1_A Type 4 fimbrial biogene 99.6 3.2E-13 1.1E-17 131.1 25.3 202 118-340 37-239 (252)
58 2vq2_A PILW, putative fimbrial 99.6 4.4E-13 1.5E-17 127.4 23.9 211 116-348 6-218 (225)
59 4a1s_A PINS, partner of inscut 99.6 6.9E-14 2.4E-18 146.9 19.8 202 522-723 128-371 (411)
60 3sf4_A G-protein-signaling mod 99.5 4.9E-13 1.7E-17 140.0 22.9 99 414-513 8-115 (406)
61 3ro2_A PINS homolog, G-protein 99.5 4.3E-13 1.5E-17 136.2 20.7 267 457-724 12-332 (338)
62 3vtx_A MAMA; tetratricopeptide 99.5 1.8E-12 6.2E-17 118.9 22.5 172 168-345 3-174 (184)
63 3sf4_A G-protein-signaling mod 99.5 3.2E-13 1.1E-17 141.4 19.8 238 168-406 7-293 (406)
64 4a1s_A PINS, partner of inscut 99.5 5.2E-13 1.8E-17 140.2 20.7 236 170-406 48-329 (411)
65 2ond_A Cleavage stimulation fa 99.5 5.1E-12 1.7E-16 126.6 25.6 219 98-339 33-270 (308)
66 2ond_A Cleavage stimulation fa 99.5 1.5E-11 5.3E-16 123.1 28.7 217 187-408 33-269 (308)
67 3vtx_A MAMA; tetratricopeptide 99.5 7.2E-12 2.5E-16 114.9 22.9 164 520-688 5-169 (184)
68 3ro2_A PINS homolog, G-protein 99.5 1.1E-12 3.9E-17 133.1 19.2 200 171-371 6-249 (338)
69 3ulq_A Response regulator aspa 99.5 4.6E-12 1.6E-16 131.5 23.4 230 491-723 109-367 (383)
70 4abn_A Tetratricopeptide repea 99.5 1.9E-12 6.5E-17 137.9 20.5 209 501-718 84-315 (474)
71 4abn_A Tetratricopeptide repea 99.4 2.7E-12 9.4E-17 136.6 19.5 213 185-404 83-316 (474)
72 3ulq_A Response regulator aspa 99.4 1.3E-11 4.5E-16 128.0 23.2 230 456-688 109-367 (383)
73 3nf1_A KLC 1, kinesin light ch 99.4 2.4E-12 8.1E-17 129.2 16.5 200 522-723 71-306 (311)
74 3nf1_A KLC 1, kinesin light ch 99.4 1.4E-12 4.8E-17 130.9 14.6 240 167-407 24-305 (311)
75 4gyw_A UDP-N-acetylglucosamine 99.4 1E-11 3.4E-16 137.5 21.6 170 165-338 4-173 (723)
76 3q15_A PSP28, response regulat 99.4 7.1E-11 2.4E-15 122.2 24.8 229 491-723 107-364 (378)
77 1hz4_A MALT regulatory protein 99.4 2.6E-10 8.8E-15 117.7 27.2 297 419-723 18-348 (373)
78 3q15_A PSP28, response regulat 99.3 1.2E-10 4E-15 120.5 23.9 230 455-688 106-364 (378)
79 1hz4_A MALT regulatory protein 99.3 6.6E-10 2.3E-14 114.6 29.0 299 382-688 16-348 (373)
80 4gyw_A UDP-N-acetylglucosamine 99.3 3.1E-11 1E-15 133.6 19.5 166 117-303 8-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.3 1.2E-10 4.2E-15 106.4 20.2 166 170-339 8-173 (186)
82 3as5_A MAMA; tetratricopeptide 99.3 1.7E-10 5.7E-15 105.5 20.0 166 118-304 8-173 (186)
83 4i17_A Hypothetical protein; T 99.3 3.4E-10 1.2E-14 107.7 22.7 206 483-702 5-221 (228)
84 4i17_A Hypothetical protein; T 99.3 5.8E-10 2E-14 106.1 22.4 208 168-388 5-222 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 1.4E-10 4.8E-15 114.2 14.8 227 496-723 12-280 (283)
86 3edt_B KLC 2, kinesin light ch 99.2 2.6E-10 8.9E-15 112.3 14.9 157 182-338 13-197 (283)
87 1qqe_A Vesicular transport pro 99.2 5.9E-10 2E-14 110.5 16.6 163 557-721 79-266 (292)
88 3mv2_B Coatomer subunit epsilo 99.1 1E-08 3.6E-13 99.1 23.8 247 423-695 21-286 (310)
89 3urz_A Uncharacterized protein 99.1 2.1E-09 7.3E-14 100.3 18.0 191 117-315 3-195 (208)
90 3urz_A Uncharacterized protein 99.1 2.5E-09 8.4E-14 99.9 18.4 168 172-346 6-191 (208)
91 2uy1_A Cleavage stimulation fa 99.1 1.8E-07 6.1E-12 99.3 34.6 203 468-688 197-412 (493)
92 3mv2_B Coatomer subunit epsilo 99.1 5.1E-08 1.7E-12 94.4 27.2 248 388-661 21-287 (310)
93 2uy1_A Cleavage stimulation fa 99.1 1.2E-07 4.1E-12 100.6 32.4 125 521-653 287-412 (493)
94 3rjv_A Putative SEL1 repeat pr 99.1 1.1E-08 3.7E-13 95.7 21.6 175 539-725 5-198 (212)
95 3dra_A Protein farnesyltransfe 99.1 5.6E-08 1.9E-12 95.2 27.2 223 181-408 44-286 (306)
96 1qqe_A Vesicular transport pro 99.1 4.7E-09 1.6E-13 103.9 19.3 162 177-338 44-227 (292)
97 2fo7_A Synthetic consensus TPR 99.1 4.8E-09 1.6E-13 89.8 17.1 130 172-304 3-132 (136)
98 3qky_A Outer membrane assembly 99.1 3.4E-09 1.2E-13 103.1 17.7 104 166-270 11-127 (261)
99 3dra_A Protein farnesyltransfe 99.1 6.7E-08 2.3E-12 94.7 26.5 234 132-387 47-300 (306)
100 2pzi_A Probable serine/threoni 99.1 2.9E-09 9.8E-14 118.6 18.1 182 129-325 402-583 (681)
101 3qky_A Outer membrane assembly 99.0 5.7E-09 2E-13 101.5 17.8 191 115-339 12-224 (261)
102 2fo7_A Synthetic consensus TPR 99.0 1.2E-08 4.2E-13 87.2 17.5 127 593-723 4-131 (136)
103 4ga2_A E3 SUMO-protein ligase 99.0 1.5E-09 5.1E-14 95.3 11.7 143 126-289 5-148 (150)
104 2pzi_A Probable serine/threoni 99.0 2E-09 6.9E-14 119.8 15.4 148 239-391 432-579 (681)
105 2r5s_A Uncharacterized protein 99.0 3.4E-09 1.2E-13 96.0 14.2 163 172-338 8-172 (176)
106 4ga2_A E3 SUMO-protein ligase 99.0 8E-10 2.7E-14 97.0 9.6 145 176-324 3-148 (150)
107 3rjv_A Putative SEL1 repeat pr 99.0 2.6E-08 9E-13 93.1 19.7 177 187-375 3-198 (212)
108 2r5s_A Uncharacterized protein 99.0 3.1E-09 1.1E-13 96.2 12.5 164 119-303 7-172 (176)
109 3qou_A Protein YBBN; thioredox 99.0 1.6E-08 5.3E-13 99.7 17.4 166 168-337 115-282 (287)
110 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.9E-08 1.7E-12 92.3 19.8 184 520-725 4-214 (225)
111 2yhc_A BAMD, UPF0169 lipoprote 99.0 5.9E-08 2E-12 91.8 20.3 184 170-375 4-214 (225)
112 3qou_A Protein YBBN; thioredox 98.9 2E-08 6.8E-13 99.0 17.2 177 103-303 105-283 (287)
113 2ifu_A Gamma-SNAP; membrane fu 98.9 7E-09 2.4E-13 103.5 12.6 222 463-716 4-253 (307)
114 2vsy_A XCC0866; transferase, g 98.9 2.8E-08 9.6E-13 108.7 18.5 155 131-306 2-159 (568)
115 2vsy_A XCC0866; transferase, g 98.9 2.3E-08 7.8E-13 109.4 17.5 154 183-340 2-158 (568)
116 2ifu_A Gamma-SNAP; membrane fu 98.9 3.2E-08 1.1E-12 98.6 16.8 223 428-681 4-253 (307)
117 3q7a_A Farnesyltransferase alp 98.9 1.6E-06 5.3E-11 85.8 27.0 181 171-356 55-253 (349)
118 3q7a_A Farnesyltransferase alp 98.9 1.1E-06 3.7E-11 86.9 25.7 219 221-444 70-331 (349)
119 2qfc_A PLCR protein; TPR, HTH, 98.8 4.1E-07 1.4E-11 89.9 22.6 165 557-722 77-264 (293)
120 3u3w_A Transcriptional activat 98.8 4.9E-07 1.7E-11 89.4 22.2 163 561-723 81-265 (293)
121 4gco_A Protein STI-1; structur 98.8 8.4E-08 2.9E-12 81.0 13.8 111 168-281 11-121 (126)
122 3gyz_A Chaperone protein IPGC; 98.8 1.7E-07 5.8E-12 81.6 15.7 105 164-270 30-134 (151)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5.8E-07 2E-11 84.0 19.6 131 171-306 7-152 (213)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3E-07 1E-11 85.9 17.4 133 555-695 6-154 (213)
125 4f3v_A ESX-1 secretion system 98.7 3.2E-07 1.1E-11 87.6 16.9 188 182-375 18-238 (282)
126 4gco_A Protein STI-1; structur 98.7 2.4E-07 8.4E-12 78.1 14.2 111 118-248 13-123 (126)
127 3gyz_A Chaperone protein IPGC; 98.7 8.3E-08 2.8E-12 83.6 11.5 103 589-696 35-138 (151)
128 1a17_A Serine/threonine protei 98.7 4.1E-07 1.4E-11 80.9 16.5 130 170-302 13-144 (166)
129 3u3w_A Transcriptional activat 98.7 4.1E-06 1.4E-10 82.6 25.0 163 526-688 81-265 (293)
130 2c2l_A CHIP, carboxy terminus 98.7 6.1E-08 2.1E-12 95.1 11.4 194 117-338 3-198 (281)
131 2qfc_A PLCR protein; TPR, HTH, 98.7 2.9E-06 9.9E-11 83.7 23.0 167 522-688 77-265 (293)
132 2c2l_A CHIP, carboxy terminus 98.7 4.3E-08 1.5E-12 96.2 9.4 99 169-269 3-101 (281)
133 1na0_A Designed protein CTPR3; 98.7 7.7E-07 2.6E-11 74.5 15.6 114 170-286 9-122 (125)
134 4f3v_A ESX-1 secretion system 98.7 1.3E-07 4.5E-12 90.2 11.8 199 130-351 18-247 (282)
135 3dss_A Geranylgeranyl transfer 98.7 1.8E-05 6.3E-10 77.8 27.0 195 501-704 90-318 (331)
136 2lni_A Stress-induced-phosphop 98.6 6.1E-07 2.1E-11 76.2 14.7 121 166-289 12-132 (133)
137 1a17_A Serine/threonine protei 98.6 7.2E-07 2.4E-11 79.3 15.6 131 118-268 13-145 (166)
138 2vyi_A SGTA protein; chaperone 98.6 7.6E-07 2.6E-11 75.3 14.9 120 169-291 11-130 (131)
139 2lni_A Stress-induced-phosphop 98.6 8.4E-07 2.9E-11 75.4 15.1 120 115-254 13-132 (133)
140 3dss_A Geranylgeranyl transfer 98.6 1.7E-05 5.8E-10 78.0 25.6 167 180-351 39-233 (331)
141 2e2e_A Formate-dependent nitri 98.6 3E-07 1E-11 83.1 12.2 123 180-305 20-145 (177)
142 1p5q_A FKBP52, FK506-binding p 98.6 7.7E-07 2.6E-11 89.7 15.9 93 626-722 197-292 (336)
143 1na0_A Designed protein CTPR3; 98.6 1.5E-06 5.1E-11 72.7 15.2 113 205-320 9-121 (125)
144 2vgx_A Chaperone SYCD; alterna 98.6 4E-07 1.4E-11 79.3 11.8 102 166-269 17-118 (148)
145 1p5q_A FKBP52, FK506-binding p 98.6 9.6E-07 3.3E-11 89.0 16.3 132 169-302 146-292 (336)
146 2e2e_A Formate-dependent nitri 98.6 2.7E-07 9.3E-12 83.3 11.0 122 129-270 21-145 (177)
147 2vyi_A SGTA protein; chaperone 98.6 1.5E-06 5.2E-11 73.3 15.0 120 117-256 11-130 (131)
148 3gw4_A Uncharacterized protein 98.6 7.1E-07 2.4E-11 82.5 13.9 156 532-688 4-175 (203)
149 3gw4_A Uncharacterized protein 98.6 5.5E-07 1.9E-11 83.3 12.8 156 181-337 3-174 (203)
150 2vgx_A Chaperone SYCD; alterna 98.5 3.4E-07 1.1E-11 79.8 10.3 110 192-304 9-118 (148)
151 3upv_A Heat shock protein STI1 98.5 1.8E-06 6.2E-11 72.7 14.2 98 170-269 4-101 (126)
152 4gcn_A Protein STI-1; structur 98.5 3.7E-07 1.3E-11 77.1 9.6 104 591-699 9-120 (127)
153 2fbn_A 70 kDa peptidylprolyl i 98.5 1.8E-07 6.1E-12 86.4 8.1 131 591-725 39-187 (198)
154 4gcn_A Protein STI-1; structur 98.5 1.1E-06 3.8E-11 74.1 12.1 96 557-653 10-111 (127)
155 2xcb_A PCRH, regulatory protei 98.5 1.1E-06 3.9E-11 75.9 12.2 102 166-269 14-115 (142)
156 1elw_A TPR1-domain of HOP; HOP 98.5 5.9E-06 2E-10 68.1 15.6 99 170-270 4-102 (118)
157 1hxi_A PEX5, peroxisome target 98.4 1.7E-06 5.8E-11 72.2 11.2 92 628-723 20-113 (121)
158 2xcb_A PCRH, regulatory protei 98.4 2.5E-06 8.5E-11 73.6 12.7 101 589-694 17-118 (142)
159 3upv_A Heat shock protein STI1 98.4 5.4E-06 1.8E-10 69.7 14.2 96 590-688 4-100 (126)
160 2kck_A TPR repeat; tetratricop 98.4 3E-06 1E-10 69.2 12.2 101 168-270 4-107 (112)
161 3sz7_A HSC70 cochaperone (SGT) 98.4 4.4E-06 1.5E-10 74.2 14.1 102 167-270 8-109 (164)
162 2fbn_A 70 kDa peptidylprolyl i 98.4 3.9E-06 1.3E-10 77.2 13.9 124 170-295 38-176 (198)
163 2kck_A TPR repeat; tetratricop 98.4 2.4E-06 8.1E-11 69.8 11.2 96 625-723 6-105 (112)
164 1elw_A TPR1-domain of HOP; HOP 98.4 8.9E-06 3.1E-10 67.0 14.8 111 118-248 4-114 (118)
165 1elr_A TPR2A-domain of HOP; HO 98.4 2.2E-06 7.7E-11 72.3 10.9 112 591-705 5-122 (131)
166 1elr_A TPR2A-domain of HOP; HO 98.4 3.1E-06 1.1E-10 71.4 11.6 98 170-269 4-108 (131)
167 3q49_B STIP1 homology and U bo 98.4 5.4E-06 1.9E-10 70.8 13.2 101 167-269 6-106 (137)
168 3q49_B STIP1 homology and U bo 98.3 8.5E-06 2.9E-10 69.6 14.0 99 587-688 6-105 (137)
169 3sz7_A HSC70 cochaperone (SGT) 98.3 5.1E-06 1.7E-10 73.7 12.9 103 587-694 8-111 (164)
170 1hxi_A PEX5, peroxisome target 98.3 3.9E-06 1.3E-10 70.0 11.3 96 172-269 19-114 (121)
171 4b4t_Q 26S proteasome regulato 98.3 2.1E-05 7.3E-10 82.4 19.8 197 492-688 11-244 (434)
172 2dba_A Smooth muscle cell asso 98.3 1.6E-05 5.6E-10 68.7 15.5 111 588-704 26-142 (148)
173 3ro3_A PINS homolog, G-protein 98.3 3.2E-06 1.1E-10 74.5 10.6 132 592-723 11-157 (164)
174 2hr2_A Hypothetical protein; a 98.3 8.4E-06 2.9E-10 70.0 12.4 59 662-722 59-129 (159)
175 2dba_A Smooth muscle cell asso 98.3 1.8E-05 6.2E-10 68.4 15.0 102 167-270 25-129 (148)
176 1wao_1 Serine/threonine protei 98.3 1.9E-06 6.4E-11 91.3 9.2 123 174-299 10-134 (477)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1E-05 3.5E-10 85.2 14.4 122 554-679 267-404 (457)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.4E-05 4.9E-10 84.1 14.6 124 170-295 268-405 (457)
179 4b4t_Q 26S proteasome regulato 98.2 6.7E-05 2.3E-09 78.6 19.9 197 457-653 11-244 (434)
180 1dce_A Protein (RAB geranylger 98.2 6.6E-05 2.3E-09 80.9 19.6 175 183-362 42-243 (567)
181 2xev_A YBGF; tetratricopeptide 98.2 1.1E-05 3.7E-10 68.0 10.8 98 593-695 5-109 (129)
182 2xev_A YBGF; tetratricopeptide 98.2 4.8E-05 1.6E-09 63.9 14.4 95 173-269 5-105 (129)
183 2hr2_A Hypothetical protein; a 98.1 3.2E-05 1.1E-09 66.4 12.5 97 170-267 11-129 (159)
184 3ro3_A PINS homolog, G-protein 98.1 1.7E-05 5.6E-10 69.8 11.1 132 557-688 11-157 (164)
185 1wao_1 Serine/threonine protei 98.1 2.3E-06 7.7E-11 90.7 6.2 124 121-264 9-134 (477)
186 3k9i_A BH0479 protein; putativ 98.1 9.6E-06 3.3E-10 67.1 8.4 88 131-234 3-90 (117)
187 3rkv_A Putative peptidylprolyl 98.1 3.7E-05 1.3E-09 67.9 12.8 99 170-269 11-126 (162)
188 1ihg_A Cyclophilin 40; ppiase 98.1 2.7E-05 9.3E-10 79.2 13.4 139 170-330 223-361 (370)
189 1dce_A Protein (RAB geranylger 98.1 0.00011 3.7E-09 79.2 18.6 177 130-328 40-244 (567)
190 2if4_A ATFKBP42; FKBP-like, al 98.1 6.5E-06 2.2E-10 82.9 8.5 150 555-729 179-331 (338)
191 3rkv_A Putative peptidylprolyl 98.1 2.5E-05 8.6E-10 69.0 11.4 114 118-240 11-131 (162)
192 1ihg_A Cyclophilin 40; ppiase 98.0 3.7E-05 1.3E-09 78.2 13.1 139 118-260 223-361 (370)
193 3k9i_A BH0479 protein; putativ 98.0 1.3E-05 4.4E-10 66.3 7.8 87 182-269 2-90 (117)
194 1klx_A Cysteine rich protein B 98.0 0.0002 6.7E-09 61.0 15.2 109 570-689 10-126 (138)
195 2if4_A ATFKBP42; FKBP-like, al 97.9 2.8E-05 9.7E-10 78.2 9.3 149 170-339 179-328 (338)
196 1klx_A Cysteine rich protein B 97.9 0.00034 1.1E-08 59.6 14.4 111 605-726 10-128 (138)
197 2l6j_A TPR repeat-containing p 97.9 1.2E-05 4.2E-10 65.5 5.0 93 624-720 3-103 (111)
198 3n71_A Histone lysine methyltr 97.9 0.00021 7.3E-09 74.9 15.5 89 564-652 318-420 (490)
199 1zu2_A Mitochondrial import re 97.8 5.8E-05 2E-09 64.6 7.6 96 604-704 16-133 (158)
200 3n71_A Histone lysine methyltr 97.7 0.0001 3.4E-09 77.4 10.5 127 527-653 316-463 (490)
201 1na3_A Designed protein CTPR2; 97.7 0.00031 1.1E-08 54.4 11.1 82 169-252 8-89 (91)
202 2l6j_A TPR repeat-containing p 97.7 0.00015 5.3E-09 58.7 9.6 92 170-263 4-101 (111)
203 2kat_A Uncharacterized protein 97.7 0.00019 6.4E-09 58.9 9.6 80 188-269 3-82 (115)
204 1zu2_A Mitochondrial import re 97.7 9.7E-05 3.3E-09 63.3 7.6 87 181-269 13-120 (158)
205 2kat_A Uncharacterized protein 97.7 0.00023 8E-09 58.3 9.8 79 607-688 2-81 (115)
206 1na3_A Designed protein CTPR2; 97.6 0.00041 1.4E-08 53.7 10.4 82 625-709 9-91 (91)
207 3ma5_A Tetratricopeptide repea 97.5 0.00042 1.4E-08 55.0 8.7 67 167-234 4-70 (100)
208 3ma5_A Tetratricopeptide repea 97.5 0.00045 1.5E-08 54.9 8.8 83 623-707 5-89 (100)
209 3ly7_A Transcriptional activat 97.2 0.004 1.4E-07 61.4 13.6 74 622-699 274-347 (372)
210 3qww_A SET and MYND domain-con 97.2 0.0014 4.8E-08 67.5 10.2 87 602-688 310-410 (433)
211 3qww_A SET and MYND domain-con 96.9 0.0047 1.6E-07 63.6 11.6 87 567-653 310-410 (433)
212 3qwp_A SET and MYND domain-con 96.9 0.0027 9.3E-08 65.5 9.8 92 597-688 294-399 (429)
213 2kc7_A BFR218_protein; tetratr 96.9 0.00077 2.6E-08 53.2 4.3 60 631-694 6-67 (99)
214 3qwp_A SET and MYND domain-con 96.9 0.011 3.8E-07 60.9 13.7 95 559-653 291-399 (429)
215 3ly7_A Transcriptional activat 96.8 0.02 7E-07 56.4 14.6 73 273-349 275-347 (372)
216 3bee_A Putative YFRE protein; 96.8 0.009 3.1E-07 46.3 9.5 64 623-688 4-71 (93)
217 2kc7_A BFR218_protein; tetratr 96.8 0.012 4.3E-07 46.0 10.5 66 176-243 6-72 (99)
218 1pc2_A Mitochondria fission pr 96.8 0.0061 2.1E-07 51.5 8.8 87 605-695 13-104 (152)
219 3u64_A Protein TP_0956; tetrat 96.7 0.29 1E-05 46.2 20.1 105 606-722 179-296 (301)
220 3lvg_A Clathrin heavy chain 1; 96.6 7.5E-07 2.6E-11 88.7 -18.3 205 168-393 52-276 (624)
221 1pc2_A Mitochondria fission pr 96.6 0.013 4.5E-07 49.5 9.5 87 570-660 13-104 (152)
222 3bee_A Putative YFRE protein; 96.3 0.026 8.8E-07 43.6 9.4 68 167-235 3-73 (93)
223 3u64_A Protein TP_0956; tetrat 96.3 0.019 6.3E-07 54.2 9.8 83 641-727 179-272 (301)
224 3mkq_A Coatomer beta'-subunit; 96.2 0.14 4.8E-06 58.1 18.9 128 178-338 607-735 (814)
225 3mkq_B Coatomer subunit alpha; 96.1 0.45 1.5E-05 41.2 16.8 98 567-685 17-114 (177)
226 2v5f_A Prolyl 4-hydroxylase su 95.9 0.033 1.1E-06 44.2 8.4 70 624-695 4-79 (104)
227 3mkq_A Coatomer beta'-subunit; 95.8 0.23 7.8E-06 56.3 18.4 76 174-267 633-708 (814)
228 2v5f_A Prolyl 4-hydroxylase su 95.8 0.082 2.8E-06 41.8 10.3 66 204-269 4-75 (104)
229 3mkq_B Coatomer subunit alpha; 95.4 0.92 3.1E-05 39.3 15.9 44 252-301 17-60 (177)
230 1wy6_A Hypothetical protein ST 95.3 0.56 1.9E-05 38.0 12.8 138 567-726 19-156 (172)
231 4h7y_A Dual specificity protei 95.2 0.36 1.2E-05 40.2 11.8 103 204-308 12-127 (161)
232 4h7y_A Dual specificity protei 95.1 0.25 8.6E-06 41.1 10.7 108 166-275 9-129 (161)
233 3lvg_A Clathrin heavy chain 1; 95.1 3.1E-05 1.1E-09 77.4 -14.7 246 117-401 53-325 (624)
234 1nzn_A CGI-135 protein, fissio 94.9 0.13 4.4E-06 41.7 8.4 86 605-694 16-106 (126)
235 1wy6_A Hypothetical protein ST 94.9 1.3 4.4E-05 36.0 14.3 140 180-341 17-156 (172)
236 4ady_A RPN2, 26S proteasome re 94.8 6.6 0.00022 43.9 43.5 266 389-663 383-664 (963)
237 1nzn_A CGI-135 protein, fissio 94.7 0.086 3E-06 42.7 7.1 87 639-729 15-106 (126)
238 2wpv_A GET4, UPF0363 protein Y 93.7 5.2 0.00018 38.4 20.7 80 274-372 133-215 (312)
239 4gns_B Protein CSD3, chitin bi 92.6 0.62 2.1E-05 50.9 11.2 132 170-302 248-398 (754)
240 3o48_A Mitochondria fission 1 92.4 1.4 4.8E-05 35.8 10.3 71 620-694 35-110 (134)
241 4gns_B Protein CSD3, chitin bi 92.2 1.1 3.9E-05 48.9 12.8 50 670-721 347-397 (754)
242 1y8m_A FIS1; mitochondria, unk 92.2 2.5 8.4E-05 34.9 11.6 73 621-695 35-110 (144)
243 4b4t_P 26S proteasome regulato 91.8 9.9 0.00034 39.0 18.8 190 498-688 29-246 (445)
244 3o48_A Mitochondria fission 1 91.4 1.9 6.3E-05 35.1 9.9 71 587-659 37-110 (134)
245 4ady_A RPN2, 26S proteasome re 91.1 23 0.00079 39.7 41.8 261 353-618 382-657 (963)
246 1y8m_A FIS1; mitochondria, unk 91.0 4.5 0.00015 33.4 12.0 72 587-660 36-110 (144)
247 4fhn_B Nucleoporin NUP120; pro 90.6 5.5 0.00019 46.7 17.4 124 166-292 838-988 (1139)
248 4b4t_P 26S proteasome regulato 90.3 18 0.0006 37.1 21.3 190 463-653 29-246 (445)
249 3lpz_A GET4 (YOR164C homolog); 89.3 16 0.00056 35.2 23.2 81 273-372 134-214 (336)
250 2wpv_A GET4, UPF0363 protein Y 88.7 17 0.00059 34.8 20.7 167 417-617 35-215 (312)
251 4fhn_B Nucleoporin NUP120; pro 88.7 14 0.00048 43.3 18.8 153 95-258 826-989 (1139)
252 2ff4_A Probable regulatory pro 88.5 1.4 4.8E-05 44.5 9.0 73 627-701 173-251 (388)
253 3lpz_A GET4 (YOR164C homolog); 87.3 22 0.00075 34.4 22.6 25 624-648 135-159 (336)
254 2ff4_A Probable regulatory pro 87.2 3.7 0.00013 41.3 11.2 56 175-231 176-231 (388)
255 3ffl_A Anaphase-promoting comp 86.8 3.2 0.00011 35.3 8.6 28 694-721 121-148 (167)
256 1v54_E Cytochrome C oxidase po 86.3 3.8 0.00013 31.3 7.6 63 640-703 25-87 (109)
257 1qsa_A Protein (soluble lytic 85.0 44 0.0015 35.7 35.9 69 164-233 96-166 (618)
258 3ffl_A Anaphase-promoting comp 84.2 5.6 0.00019 33.8 8.8 115 177-304 27-151 (167)
259 3esl_A Checkpoint serine/threo 83.2 9.6 0.00033 33.6 10.2 56 638-693 92-148 (202)
260 3txn_A 26S proteasome regulato 83.0 40 0.0014 33.6 21.6 167 450-617 19-208 (394)
261 4b4t_R RPN7, 26S proteasome re 81.4 16 0.00054 37.3 13.0 97 557-653 133-236 (429)
262 1zbp_A Hypothetical protein VP 81.1 9.8 0.00034 35.3 9.9 112 564-688 6-128 (273)
263 2y69_E Cytochrome C oxidase su 79.5 18 0.00061 29.4 9.5 62 641-703 69-130 (152)
264 4b4t_R RPN7, 26S proteasome re 77.1 9.9 0.00034 38.8 9.9 109 591-699 132-247 (429)
265 2p58_C Putative type III secre 76.0 18 0.00062 27.5 8.0 77 605-689 22-98 (116)
266 1zbp_A Hypothetical protein VP 75.5 52 0.0018 30.5 14.0 112 599-723 6-128 (273)
267 2p58_C Putative type III secre 75.0 25 0.00086 26.7 8.6 47 286-338 51-97 (116)
268 4a1g_A Mitotic checkpoint seri 74.1 25 0.00085 29.4 9.6 50 679-728 84-134 (152)
269 1qsa_A Protein (soluble lytic 73.9 99 0.0034 33.0 34.3 116 499-618 228-347 (618)
270 2uwj_G Type III export protein 73.4 18 0.00062 27.4 7.4 77 605-689 21-97 (115)
271 1v54_E Cytochrome C oxidase po 73.1 19 0.00067 27.5 7.7 48 571-618 26-73 (109)
272 2uwj_G Type III export protein 71.3 24 0.00082 26.8 7.7 49 285-339 49-97 (115)
273 2wvi_A Mitotic checkpoint seri 69.9 33 0.0011 29.1 9.5 53 642-694 77-130 (164)
274 3esl_A Checkpoint serine/threo 69.3 39 0.0014 29.7 10.1 56 603-658 92-148 (202)
275 3txn_A 26S proteasome regulato 66.5 1.1E+02 0.0037 30.5 23.3 298 415-726 19-345 (394)
276 2y69_E Cytochrome C oxidase su 62.4 62 0.0021 26.3 9.0 61 571-632 69-129 (152)
277 3mv2_A Coatomer subunit alpha; 61.1 1.2E+02 0.004 29.0 14.9 30 277-306 209-238 (325)
278 3eiq_C Programmed cell death p 59.7 45 0.0015 32.6 9.7 63 593-656 220-284 (358)
279 4aez_C MAD3, mitotic spindle c 56.4 35 0.0012 30.6 7.6 52 642-693 131-183 (223)
280 4a1g_A Mitotic checkpoint seri 54.6 94 0.0032 25.9 9.5 50 609-658 84-134 (152)
281 4b4t_S RPN3, 26S proteasome re 51.9 62 0.0021 33.4 9.5 65 170-234 231-299 (523)
282 2qx5_A Nucleoporin NIC96; mRNA 50.0 2.7E+02 0.0092 29.9 21.3 32 695-729 533-569 (661)
283 2wvi_A Mitotic checkpoint seri 48.1 1.3E+02 0.0043 25.5 9.8 53 608-660 78-131 (164)
284 1k1a_A B-cell lymphoma 3-encod 46.2 98 0.0034 27.7 9.7 16 285-300 86-101 (241)
285 3eiq_C Programmed cell death p 45.2 97 0.0033 30.3 9.4 25 173-197 57-81 (358)
286 1k1a_A B-cell lymphoma 3-encod 44.4 60 0.002 29.2 7.8 84 248-335 14-101 (241)
287 3mkr_B Coatomer subunit alpha; 41.6 2.4E+02 0.0082 26.9 18.2 30 277-306 200-229 (320)
288 2nsz_A Programmed cell death p 38.8 1.5E+02 0.0052 23.8 9.2 62 593-655 10-73 (129)
289 2zu6_B Programmed cell death p 35.8 1.2E+02 0.0042 28.8 8.4 25 453-477 6-30 (307)
290 3ltm_A Alpha-REP4; protein eng 35.8 2.2E+02 0.0075 24.7 20.0 17 274-290 94-110 (211)
291 2d2s_A Exocyst complex compone 34.5 1.8E+02 0.0063 26.3 9.0 90 596-688 24-119 (235)
292 4gq2_M Nucleoporin NUP120; bet 34.4 3E+02 0.01 31.3 12.8 111 166-289 836-950 (950)
293 4gq2_M Nucleoporin NUP120; bet 34.2 2.6E+02 0.0088 31.8 12.2 44 95-145 824-867 (950)
294 2ion_A PDCD4, programmed cell 33.9 1.7E+02 0.0059 24.3 8.1 64 592-656 11-76 (152)
295 1wgl_A TOLL-interacting protei 33.1 60 0.002 22.0 4.1 34 73-106 15-48 (59)
296 3pvs_A Replication-associated 32.9 4E+02 0.014 26.9 12.8 138 535-692 166-327 (447)
297 2d2s_A Exocyst complex compone 32.0 2.7E+02 0.0091 25.2 9.7 29 274-302 90-118 (235)
298 2zu6_B Programmed cell death p 31.7 1.4E+02 0.0049 28.3 8.1 25 278-302 6-30 (307)
299 3kea_A K1L; tropism, ANK repea 30.2 1.1E+02 0.0037 28.7 7.2 20 316-335 164-183 (285)
300 1wdy_A 2-5A-dependent ribonucl 29.7 1.1E+02 0.0036 28.3 7.1 18 464-481 193-210 (285)
301 2nsz_A Programmed cell death p 29.3 1.6E+02 0.0056 23.6 7.0 22 455-476 12-33 (129)
302 1wty_A Hypothetical protein TT 28.6 1.8E+02 0.0062 22.9 7.1 77 605-688 3-80 (119)
303 1wdy_A 2-5A-dependent ribonucl 28.1 89 0.003 28.8 6.2 7 461-467 227-233 (285)
304 4aez_C MAD3, mitotic spindle c 27.3 1.1E+02 0.0037 27.5 5.9 52 607-658 131-183 (223)
305 3ltm_A Alpha-REP4; protein eng 26.6 3.1E+02 0.011 23.7 19.7 142 238-395 31-172 (211)
306 3jxi_A Vanilloid receptor-rela 26.6 54 0.0018 30.1 4.3 19 217-235 14-32 (260)
307 3eu9_A Huntingtin-interacting 25.9 74 0.0025 28.4 5.0 11 283-293 47-57 (240)
308 2dhy_A CUE domain-containing p 25.8 97 0.0033 21.6 4.2 35 73-107 24-58 (67)
309 2ijq_A Hypothetical protein; s 25.8 3E+02 0.01 23.1 8.1 15 708-722 88-102 (161)
310 3t8k_A Uncharacterized protein 25.6 2.9E+02 0.01 23.6 8.7 28 282-309 42-69 (186)
311 2r9g_A AAA ATPase, central reg 25.6 3.4E+02 0.012 23.7 10.3 92 631-723 17-116 (204)
312 3u84_A Menin; MLL, JUND, ledgf 24.1 5.3E+02 0.018 25.5 10.6 90 624-713 317-425 (550)
313 1oyz_A Hypothetical protein YI 24.0 4.1E+02 0.014 24.2 23.1 234 202-460 34-277 (280)
314 3bge_A Predicted ATPase; struc 23.4 3.7E+02 0.013 23.4 8.7 23 603-625 20-42 (201)
315 2ion_A PDCD4, programmed cell 22.6 1.5E+02 0.0051 24.7 5.6 21 456-476 15-35 (152)
316 3re2_A Predicted protein; meni 22.4 4.9E+02 0.017 25.2 9.4 85 624-713 295-393 (472)
317 1wgl_A TOLL-interacting protei 22.3 47 0.0016 22.5 2.0 25 706-730 34-58 (59)
318 3eu9_A Huntingtin-interacting 22.2 1E+02 0.0034 27.5 5.2 42 181-226 17-60 (240)
319 4b4t_S RPN3, 26S proteasome re 22.1 6.6E+02 0.023 25.9 13.0 65 240-304 231-299 (523)
320 3jxi_A Vanilloid receptor-rela 21.9 92 0.0032 28.4 4.9 54 179-232 11-73 (260)
321 3t8k_A Uncharacterized protein 21.8 3.2E+02 0.011 23.3 8.1 64 247-310 42-109 (186)
322 3s6n_M SurviVal motor neuron p 21.5 1.2E+02 0.0042 17.7 3.2 21 174-200 12-32 (37)
323 2f6m_A Suppressor protein STP2 20.6 1.5E+02 0.0052 20.4 4.2 44 173-217 5-48 (65)
324 3pvs_A Replication-associated 20.4 6.6E+02 0.023 25.2 16.1 29 117-147 193-221 (447)
325 3kea_A K1L; tropism, ANK repea 20.1 2.4E+02 0.0082 26.1 7.5 13 286-298 103-115 (285)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-42 Score=384.95 Aligned_cols=488 Identities=12% Similarity=0.029 Sum_probs=322.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004744 204 SINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLIN 283 (732)
Q Consensus 204 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~ 283 (732)
+...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..+|+++... .++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 4455555555555555555555555555532 344455555555555555555555555554332 335555555555
Q ss_pred HHHHcCCHHHHHHHHHHHhh---------------CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 004744 284 AYCREGFLEEAFQLMNSMSG---------------KGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATY 348 (732)
Q Consensus 284 ~~~~~g~~~~A~~~~~~m~~---------------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 348 (732)
+|.+.|++++|+++|+++.. .+.+++..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 55555555555555553211 1234456777777777777777777777777777653 2244455
Q ss_pred HHHHHHHHcCCCHhHHHH--H-HHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004744 349 NTLLVESCRKENMSEAEE--I-FCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGY 425 (732)
Q Consensus 349 ~~li~~~~~~g~~~~A~~--~-~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~ 425 (732)
..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..++..++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 555544433322222111 1 344444433334455666677777777777777777777654 46777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004744 426 CRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKAL 505 (732)
Q Consensus 426 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 505 (732)
.+.|++++|+++|+++.+.++. +..+++.++.++.+.|++++|.++++++.+..+ .+..++..++..|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHH
Confidence 7777777777777777765544 666777777777777788888777777776543 36777777777777788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004744 506 NLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKG 585 (732)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 585 (732)
++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8877777643 2356677777788888888888888887777663 3367777778888888888888888888877653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004744 586 IKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSE----GVDPD--SISYNTLINGFVREENMDKAFALVSKMENQGLVPD 659 (732)
Q Consensus 586 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 659 (732)
+.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 549 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TND 549 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCC
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 556777888888888888888888888877764 45666 6778888888888888888888888877742 336
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 004744 660 VITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHV 706 (732)
Q Consensus 660 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 706 (732)
..+|..++.+|.+.|++++|...|+++.+ +.| +...|..+..+|.
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHh
Confidence 67788888888888888888888888887 666 3566666666553
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-41 Score=378.36 Aligned_cols=491 Identities=12% Similarity=0.027 Sum_probs=414.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004744 219 GWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLM 298 (732)
Q Consensus 219 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 298 (732)
|....+...+..+. .+++..|+.++..|.+.|++++|..+|++|... .|+..++..++.+|.+.|++++|..+|
T Consensus 67 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 67 GSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 33344444444332 367889999999999999999999999999865 578899999999999999999999999
Q ss_pred HHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC---------------CCCCCHHhHHHHHHHHHcCCCHhH
Q 004744 299 NSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQM---------------GLSPDTATYNTLLVESCRKENMSE 363 (732)
Q Consensus 299 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~ 363 (732)
+.+... +++..+++.++.+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 998653 568999999999999999999999999953321 223457899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHH--H-HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004744 364 AEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALM--Y-FREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDE 440 (732)
Q Consensus 364 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~--l-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 440 (732)
|.++|++|.+.+.. +...+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|++
T Consensus 219 A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 219 AKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 99999999886533 56667777665554443333221 1 45555544445556778888999999999999999999
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004744 441 MLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDI 520 (732)
Q Consensus 441 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 520 (732)
+.+. +++..+|+.++.+|.+.|++++|.++|+++.+.++. +..++..++.++.+.|++++|..+++.+.+.. +.+.
T Consensus 298 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 298 INGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp STTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred hhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 9875 579999999999999999999999999999987654 77889999999999999999999999998653 4578
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004744 521 VTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGY 600 (732)
Q Consensus 521 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 600 (732)
.++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 899999999999999999999999998863 3478899999999999999999999999999874 66889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcC
Q 004744 601 CRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQ----GLVPD--VITYNVILTGFCRQG 674 (732)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g 674 (732)
.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999854 347889999999999999999999999999884 56787 789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004744 675 RMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAFRFHDEMLQRGFVPD 729 (732)
Q Consensus 675 ~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 729 (732)
++++|...++++.+ ..| +..+|..++.+|.+.|++++|.+.++++++ +.|+
T Consensus 531 ~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~ 582 (597)
T 2xpi_A 531 MYDAAIDALNQGLL--LSTNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPN 582 (597)
T ss_dssp CHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCC
Confidence 99999999999998 456 689999999999999999999999999985 3454
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=5.1e-28 Score=253.24 Aligned_cols=380 Identities=14% Similarity=0.056 Sum_probs=244.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004744 176 VIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHK 255 (732)
Q Consensus 176 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (732)
+...+.+.|++++|++.|.++.+..+. +...+..+...+.+.|++++|...++.+++.. +.+..+|..++..|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 355677788888888888888777655 56677777777888888888888888777654 6677778888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 004744 256 IDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDE 335 (732)
Q Consensus 256 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 335 (732)
+++|...|+++.+..+. +..+|..++..+.+.|++++|.+.|+++.+.++. +...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88888888887765322 4556777777888888888888888777765322 445566677777777777777777777
Q ss_pred HHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 004744 336 MLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDN 415 (732)
Q Consensus 336 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 415 (732)
+.+.. +.+..+|..+...+...|++++|.+.|+++.+.+.. +...|..+...+...|++++|...|++..+... .+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCH
Confidence 77653 334566777777777777777777777777665322 456666666777777777777777766655421 245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004744 416 VLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGH 495 (732)
Q Consensus 416 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 495 (732)
.++..+...|.+.|++++|++.++++.+.++. +..+|..+...+.+.|++++|.+.|+++.+..+ .+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHH
Confidence 56666666666666666666666666665433 455566666666666666666666666655432 2455555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004744 496 CKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYC 566 (732)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 566 (732)
.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+...|..+...+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK 384 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHH
Confidence 56666666666665555432 2234455555555555555555555555555432 123344444444433
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=7e-28 Score=252.19 Aligned_cols=383 Identities=15% Similarity=0.053 Sum_probs=335.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCcc
Q 004744 124 MIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICF 203 (732)
Q Consensus 124 l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 203 (732)
+...+.+.|++++|...+.++++. .|.++..+..+...+.+.|++++|...++.+.+..+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~- 65 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ------------------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL- 65 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence 456678899999999999998754 4556778889999999999999999999999987655
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004744 204 SINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLIN 283 (732)
Q Consensus 204 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~ 283 (732)
+..+|..+..++.+.|++++|.+.|+++++.. |.+..++..++.++.+.|++++|...|+++.+..+. +...+..+..
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 143 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGN 143 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 88999999999999999999999999999875 667778999999999999999999999999987533 4567888889
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhH
Q 004744 284 AYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSE 363 (732)
Q Consensus 284 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 363 (732)
.+...|++++|.+.|+++.+.... +..+|..+...+.+.|++++|...|+++++.+ +.+...|..+...+...|++++
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999886433 67899999999999999999999999999865 4467789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 364 AEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLE 443 (732)
Q Consensus 364 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 443 (732)
|.+.+.+..+.... +..++..+...+.+.|++++|.+.|+++.+.+. .+..+|..+...+.+.|++++|+..++++.+
T Consensus 222 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 222 AVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999876432 688999999999999999999999999998743 3577899999999999999999999999998
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004744 444 KGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTY 523 (732)
Q Consensus 444 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 523 (732)
..+ .+..+++.+...+.+.|++++|...++++.+..+ .+..++..+...+.+.|++++|...|+++.+... .+...|
T Consensus 300 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~ 376 (388)
T 1w3b_A 300 LCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAY 376 (388)
T ss_dssp HCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHH
T ss_pred hCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHH
Confidence 754 4889999999999999999999999999988643 3678999999999999999999999999998643 356677
Q ss_pred HHHHHHHHhcC
Q 004744 524 NTLIDGFCKVG 534 (732)
Q Consensus 524 ~~li~~~~~~g 534 (732)
..+...+.+.|
T Consensus 377 ~~lg~~~~~~~ 387 (388)
T 1w3b_A 377 SNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTC
T ss_pred HhHHHHHHHcc
Confidence 77777666554
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.2e-29 Score=266.21 Aligned_cols=203 Identities=21% Similarity=0.278 Sum_probs=107.7
Q ss_pred HHHHHHHHHCCCccCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------hhHH
Q 004744 190 SEVFRLLRNKGICFSI-NACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHK---------IDSA 259 (732)
Q Consensus 190 ~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A 259 (732)
..+++++.+.+....+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3344444444443332 23555566666666666666666666666666666666666666655443 3445
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004744 260 KMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQM 339 (732)
Q Consensus 260 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 339 (732)
.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 004744 340 GLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSR 392 (732)
Q Consensus 340 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 392 (732)
|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555555543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.8e-29 Score=265.65 Aligned_cols=202 Identities=16% Similarity=0.229 Sum_probs=115.7
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------HHHHH
Q 004744 226 EVYAEVVRSGIELNV-YTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGF---------LEEAF 295 (732)
Q Consensus 226 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~---------~~~A~ 295 (732)
.+.+++.+.+....+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 333444444433332 24555666666666666666666666666666666666666666665443 45566
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCC
Q 004744 296 QLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRG 375 (732)
Q Consensus 296 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 375 (732)
++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004744 376 VAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCR 427 (732)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~ 427 (732)
+.||..+|++|+.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666665555544
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-24 Score=236.21 Aligned_cols=453 Identities=10% Similarity=-0.045 Sum_probs=289.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004744 205 INACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINA 284 (732)
Q Consensus 205 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 284 (732)
...+......+.+.|++++|...|+++++.+ |+..++..++.++.+.|++++|...++++.+.++. +..+|..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 4556666677777777777777777777654 56667777777777777777777777777665432 45566677777
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHH
Q 004744 285 YCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEA 364 (732)
Q Consensus 285 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 364 (732)
|.+.|++++|.+.|+++...+. ++......++..+........+.+.+..+...+..|+...+..-.........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 157 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN---- 157 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C----
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC----
Confidence 7777777777777777766543 23344444444443333333333333333322222222211111000000011
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH
Q 004744 365 EEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCR---NGFVLEALKMRDEM 441 (732)
Q Consensus 365 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 441 (732)
.|+.......+..+...... .....+.+...+......+.. .|++++|+..++++
T Consensus 158 ------------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 158 ------------LPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp ------------CCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ------------CchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 11111111100000000000 000001113333333333333 67777777777777
Q ss_pred HH-----C--CC------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004744 442 LE-----K--GC------VMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLF 508 (732)
Q Consensus 442 ~~-----~--~~------~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 508 (732)
.+ . .+ +.+..++..+...+...|++++|...|+++.+.++. ..++..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66 2 11 123556777788888888888888888888877544 777888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004744 509 DIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKP 588 (732)
Q Consensus 509 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 588 (732)
+.+..... .+...+..+...+...|++++|...++++.+.... +...+..+...|...|++++|+..++++.+.. +.
T Consensus 294 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 370 (514)
T 2gw1_A 294 DKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PE 370 (514)
T ss_dssp HHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-cc
Confidence 88887643 36677888888888899999999999888876433 66788888888889999999999999888763 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 004744 589 TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVD-PD----SISYNTLINGFVR---EENMDKAFALVSKMENQGLVPDV 660 (732)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~g~~p~~ 660 (732)
+..++..+...+.+.|++++|.+.++++.+.... ++ ...+..++..+.. .|++++|...++++.+.. +.+.
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 449 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSE 449 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccH
Confidence 6778888888999999999999999888764211 11 3478888888988 899999999999988842 3356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 661 ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR 695 (732)
Q Consensus 661 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 695 (732)
.++..++..|.+.|++++|...|+++.+ +.|+.
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~ 482 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESAD--LARTM 482 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hcccc
Confidence 7888888999999999999999999998 67754
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.4e-24 Score=233.26 Aligned_cols=454 Identities=10% Similarity=-0.015 Sum_probs=285.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA 249 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (732)
+..+..++..|.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|.+.|+++++.+ |.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567778999999999999999999999986 589999999999999999999999999999876 7778899999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 004744 250 LCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRA 329 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 329 (732)
|.+.|++++|...|+++.+.+. ++......++..+.+......+.+.+..+...+..|+...+..-.........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 157 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN---- 157 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C----
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC----
Confidence 9999999999999999999864 34555555566555554445555544444333322332222211111111111
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh---CCCHHHHHHHHHHH
Q 004744 330 KEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSR---NGQLDRALMYFREM 406 (732)
Q Consensus 330 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~~l~~~~ 406 (732)
.|+.......+..+...... . ....+.+...+......+.. .|++++|..+|+++
T Consensus 158 ------------~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 158 ------------LPSVTSMASFFGIFKPELTF----A------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp ------------CCCHHHHHHHHTTSCCCCCC----S------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ------------CchhHHHHHHHhhcCHHHHH----H------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 12211111111000000000 0 00001123333333333333 55555555555555
Q ss_pred HH-----CCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004744 407 KS-----AGL--------VPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLF 473 (732)
Q Consensus 407 ~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 473 (732)
.+ ... +.+..++..+...+...|++++|...++++.+..+. ...+..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 54 210 112345566666666677777777777766665433 666666677777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004744 474 NEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISP 553 (732)
Q Consensus 474 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 553 (732)
+.+.+.... +..++..+...+...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+.. +.
T Consensus 294 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 370 (514)
T 2gw1_A 294 DKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PE 370 (514)
T ss_dssp HHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-cc
Confidence 777665433 4556667777777777777777777777665332 45666677777777777777777777777653 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCH
Q 004744 554 NYISYGILINGYCSMGHVTEAFRLWYEMVGKGI-KPT----LVSCNTIIKGYCR---SGDASKADEFLSKMVSEGVDPDS 625 (732)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 625 (732)
+...+..+...|...|++++|...++++.+... .++ ...+..+...+.. .|++++|.+.++++.+.. +.+.
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 449 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSE 449 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccH
Confidence 556677777777777888888887777765421 111 3367777777777 788888888888877643 2356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004744 626 ISYNTLINGFVREENMDKAFALVSKMENQGLVPDVI 661 (732)
Q Consensus 626 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 661 (732)
..+..++..|.+.|++++|...++++.+ +.|+..
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 6777778888888888888888888877 456543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.6e-23 Score=222.11 Aligned_cols=309 Identities=12% Similarity=0.046 Sum_probs=212.9
Q ss_pred hcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 004744 162 TYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVY 241 (732)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 241 (732)
.+...+.++..+..++..|.+.|++++|+..|+++.+..+. +..+|..++.++.+.|++++|.+.|+++++.+ +.+..
T Consensus 18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 95 (450)
T 2y4t_A 18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTA 95 (450)
T ss_dssp -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHH
Confidence 33556778899999999999999999999999999987655 78999999999999999999999999999876 66788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHH------------HHHHcCCHHHHHHHHHHHhhCCC
Q 004744 242 TLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDT---VTYNTLIN------------AYCREGFLEEAFQLMNSMSGKGL 306 (732)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~g~ 306 (732)
++..++.+|.+.|++++|...|+++.+.... +. .++..++. .+.+.|++++|++.|+++.+...
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999987432 33 55655544 37777788888888877776533
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHH
Q 004744 307 KPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTL 386 (732)
Q Consensus 307 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 386 (732)
.+..++..++..|.+.|++++|...|+++.+.. +.+..++..++..|...|++++|.+.|+++.+.... +...+..+
T Consensus 175 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~ 251 (450)
T 2y4t_A 175 -WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHY 251 (450)
T ss_dssp -TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred -CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHH
Confidence 266777777777777777777777777777643 345667777777777777777777777777654322 33334333
Q ss_pred ------------HHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 004744 387 ------------IGIFSRNGQLDRALMYFREMKSAGLVPD-----NVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMD 449 (732)
Q Consensus 387 ------------~~~~~~~g~~~~A~~l~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (732)
+..+...|++++|...|+++.+.. |+ ...+..+...+.+.|++++|+..++++.+..+. +
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~ 328 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-N 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-c
Confidence 455555555555555555555432 22 224444555555555555555555555443222 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004744 450 VVTYNTILNGLCRAKMLTEADDLFNEMLER 479 (732)
Q Consensus 450 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 479 (732)
...|..+..+|...|++++|...|+++.+.
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 455555555555555555555555555543
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=6.7e-23 Score=224.40 Aligned_cols=433 Identities=10% Similarity=0.013 Sum_probs=237.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA 249 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (732)
...|..++..|.+.|++++|+..|+++.+..+. +..+|..+..++.+.|++++|.+.|+++++.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 566788889999999999999999999988765 78899999999999999999999999998875 6678888888999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC--CCCHhhHHHHHHHHHhcCChh
Q 004744 250 LCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGL--KPGVFTYNSLINGLCKKGRCD 327 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~ 327 (732)
+...|++++|...|+ .... .|+. ....+..+...+..++|.+.++.+..... .+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999996 4433 2222 22334455666677888888888865411 001111123334444555555
Q ss_pred HHHHHHHHHHHCCCCCCHH-hHHHHHHHHHcC--------CCHhHHHHHHHHHHhCCCCCCH-------hHHHHHHHHHH
Q 004744 328 RAKEVLDEMLQMGLSPDTA-TYNTLLVESCRK--------ENMSEAEEIFCEMSRRGVAPDI-------VSFSTLIGIFS 391 (732)
Q Consensus 328 ~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~--------g~~~~A~~~~~~~~~~g~~~~~-------~~~~~l~~~~~ 391 (732)
.+...+...... .+... ....+...+... |++++|.++++++.+.... +. .++..+...+.
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHH
Confidence 555444332221 12211 222222222211 3556666666666554322 21 12334444444
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 004744 392 RNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADD 471 (732)
Q Consensus 392 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 471 (732)
..|++++|...|+++.+. .|+... +..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~-----------------------------------~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNS-----------------------------------YIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHH-----------------------------------HHHHHHHTCCSSCCHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchH-----------------------------------HHHHHHHHHHhcCHHHHHH
Confidence 455555555555554443 222344 4444444444455555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004744 472 LFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKI 551 (732)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 551 (732)
.|+++.+..+. +..++..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+..
T Consensus 298 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 374 (537)
T 3fp2_A 298 FFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF- 374 (537)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 55544443322 3444445555555555555555555554443221 33444455555555555555555555555442
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHH
Q 004744 552 SPNYISYGILINGYCSMGHVTEAFRLWYEMVGKG-----IKPTLVSCNTIIKGYCRS----------GDASKADEFLSKM 616 (732)
Q Consensus 552 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~ 616 (732)
+.+...+..+...|...|++++|...|+++.+.. .......+......+.+. |++++|...++++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 2234455555555555555555555555554321 111222233444455555 6666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 617 VSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 617 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
.+.. +.+...+..+...|.+.|++++|.+.++++.+
T Consensus 455 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 455 CELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6532 22455566666666666666666666666666
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=3.3e-23 Score=226.87 Aligned_cols=445 Identities=12% Similarity=-0.002 Sum_probs=305.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004744 205 INACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINA 284 (732)
Q Consensus 205 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 284 (732)
...|..+...+.+.|++++|.+.|+++++.. |.+..++..+..+|.+.|++++|...|+++.+.++. +..++..++..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4556777777788888888888888877764 566777777777788888888888888877776433 56677777777
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHcCCCHh
Q 004744 285 YCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGL--SPDTATYNTLLVESCRKENMS 362 (732)
Q Consensus 285 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~ 362 (732)
+.+.|++++|.+.|+. ... .|+ .....+..+...+...+|...++++..... .+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSV-LSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHH-Hhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 7777888888877753 322 111 112223344455555667777766654310 000011122233333444444
Q ss_pred HHHHHHHHHHhCCCCCCH-hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004744 363 EAEEIFCEMSRRGVAPDI-VSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEM 441 (732)
Q Consensus 363 ~A~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 441 (732)
.+...+...... .+.. .....+...+...+ -......|++++|+.+++++
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHHHHHH
Confidence 444333222211 1111 11111111111110 00011124556666666666
Q ss_pred HHCCCCcC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 442 LEKGCVMD-------VVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQK 514 (732)
Q Consensus 442 ~~~~~~~~-------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (732)
.+..+. + ..++..+...+...|++++|...|+.+.+.. |+..++..+...+...|++++|...++.+.+.
T Consensus 229 l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 305 (537)
T 3fp2_A 229 LSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL 305 (537)
T ss_dssp HC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH
T ss_pred HHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Confidence 654333 2 2345666778889999999999999999874 45788899999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004744 515 SIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCN 594 (732)
Q Consensus 515 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 594 (732)
.. .+..++..+...+...|++++|...|+++.+... .+...+..+...|...|++++|...++++.+.. +.+...+.
T Consensus 306 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 382 (537)
T 3fp2_A 306 NP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPT 382 (537)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHH
T ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 43 3778899999999999999999999999998743 367889999999999999999999999999874 66778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCC
Q 004744 595 TIIKGYCRSGDASKADEFLSKMVSEG-----VDPDSISYNTLINGFVRE----------ENMDKAFALVSKMENQGLVPD 659 (732)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~g~~p~ 659 (732)
.+...+...|++++|.+.++++.+.. .......+..+...+.+. |++++|...++++.+.. +.+
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~ 461 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRS 461 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCC
Confidence 99999999999999999999987642 122334456667778888 99999999999999842 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004744 660 VITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD 694 (732)
Q Consensus 660 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 694 (732)
...|..++..|.+.|++++|...|+++.+ +.|+
T Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~ 494 (537)
T 3fp2_A 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAI--LART 494 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCC
Confidence 67899999999999999999999999999 5664
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2e-22 Score=215.35 Aligned_cols=319 Identities=13% Similarity=0.034 Sum_probs=234.0
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004744 187 REGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEM 266 (732)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 266 (732)
..+...|..+....+. +...+..++..+.+.|++++|..+|+++++.. +.+..++..++.++.+.|++++|...|+++
T Consensus 9 ~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444556666655544 78889999999999999999999999999864 678899999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH---hhHHHHH------------HHHHhcCChhHHHH
Q 004744 267 EQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGV---FTYNSLI------------NGLCKKGRCDRAKE 331 (732)
Q Consensus 267 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li------------~~~~~~g~~~~A~~ 331 (732)
.+.+.. +..++..++..|.+.|++++|.+.|+++.+.+.. +. .++..++ ..+.+.|++++|..
T Consensus 87 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 988543 6788999999999999999999999999886432 34 5665553 44888999999999
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 004744 332 VLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGL 411 (732)
Q Consensus 332 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~ 411 (732)
.|+++.+.. +.+..++..++..|.+.|++++|.+.|+++.+... .+..+|..++..+...|++++|...|+++.+...
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 242 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999988764 45677888889999999999999999998877532 3678888899999999999999999998876532
Q ss_pred CCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004744 412 VPDNVLYTII------------INGYCRNGFVLEALKMRDEMLEKGCVMD----VVTYNTILNGLCRAKMLTEADDLFNE 475 (732)
Q Consensus 412 ~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~ 475 (732)
.+...+..+ ...+.+.|++++|+..++++.+..+. + ...+..+...+.+.|++++|...+++
T Consensus 243 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 243 -DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 233344333 56666677777777777776664322 2 23556666666677777777777776
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004744 476 MLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQK 514 (732)
Q Consensus 476 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (732)
+.+..+. +..+|..+..+|...|++++|...++++.+.
T Consensus 321 a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 321 VLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 6655322 5566666666666777777777777666654
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=2.7e-17 Score=184.11 Aligned_cols=420 Identities=12% Similarity=0.135 Sum_probs=234.8
Q ss_pred cCCChHHHHHHHHhhccChhHHHHHHHhHHhhC-CCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHH
Q 004744 79 FRLNSVIIVEVLYRLRDNLQVGQRFIDFIALNF-PNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVD 157 (732)
Q Consensus 79 ~~l~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (732)
.+-++.....||.. +-+.-+.+.+|..... |. ..++.--...+..|...|.+.+|+++|++++..+.
T Consensus 949 ~r~d~~lW~~vl~~---~n~~RR~Lidqv~a~aL~e-~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s-------- 1016 (1630)
T 1xi4_A 949 RRKDPELWGSVLLE---SNPYRRPLIDQVVQTALSE-TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNS-------- 1016 (1630)
T ss_pred HhcCHHHHHHHhcC---CcHHHHHHHHHHHHhhccc-ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCC--------
Confidence 34455555555532 1123345666654332 33 55666778888999999999999999999973311
Q ss_pred hhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004744 158 SFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIE 237 (732)
Q Consensus 158 ~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 237 (732)
....+...-+.|+.+..+. +..+..+...+.-.. + ..-+...+...|.+++|..+|++..
T Consensus 1017 -------~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~----- 1076 (1630)
T 1xi4_A 1017 -------VFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD----- 1076 (1630)
T ss_pred -------cccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC-----
Confidence 1122344444455555554 334444433333211 1 2335566666666777766666541
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 004744 238 LNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLI 317 (732)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 317 (732)
-.....+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. .|...|..++
T Consensus 1077 ~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa 1141 (1630)
T 1xi4_A 1077 VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVV 1141 (1630)
T ss_pred CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHH
Confidence 11122222222 4466666666666442 4556666666666667777776666553 1556666666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHH
Q 004744 318 NGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLD 397 (732)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 397 (732)
..+.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+. . .++...|..+...|...|+++
T Consensus 1142 ~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~Ye 1212 (1630)
T 1xi4_A 1142 QAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYD 1212 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHH
Confidence 66666677777766666655542 33333334666666666666433322 1 234455556666666666777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 398 RALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEML 477 (732)
Q Consensus 398 ~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 477 (732)
+|..+|... ..|..+...|++.|++++|.+.+++. .+..+|..+..+|...|++..|......+.
T Consensus 1213 eA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii 1277 (1630)
T 1xi4_A 1213 AAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV 1277 (1630)
T ss_pred HHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 776666653 25666666666666666666666655 255666666666666666666666554321
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCC----C
Q 004744 478 ERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKV--GEMEKANKLWADMISRK----I 551 (732)
Q Consensus 478 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~----~ 551 (732)
.++..+..++..|.+.|.+++|+.+++..+... +-....|+-+...|++. +++.++.+.|..-.... .
T Consensus 1278 -----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~ 1351 (1630)
T 1xi4_A 1278 -----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA 1351 (1630)
T ss_pred -----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHH
Confidence 244455566666666666666666666655443 22334454455555443 34444444444322210 0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 004744 552 SPNYISYGILINGYCSMGHVTEAF 575 (732)
Q Consensus 552 ~~~~~~~~~li~~~~~~g~~~~A~ 575 (732)
-.+...|..++-.|.+.|+++.|.
T Consensus 1352 ~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1352 AEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHH
Confidence 013445666666666666666666
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=6e-18 Score=182.24 Aligned_cols=363 Identities=14% Similarity=0.058 Sum_probs=198.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChhHH
Q 004744 258 SAKMFLCEMEQKGVYPDTVTYNTLINAYCR----EGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCK----KGRCDRA 329 (732)
Q Consensus 258 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A 329 (732)
.+...+....+.| +..++..+...|.. .+++++|++.|++..+.| +..++..|...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455555555543 66677777777776 677777777777777653 55667777777776 6777777
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHc----CCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----CCCHHHHHH
Q 004744 330 KEVLDEMLQMGLSPDTATYNTLLVESCR----KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSR----NGQLDRALM 401 (732)
Q Consensus 330 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~ 401 (732)
...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 77777776654 45555666666666 666777777777666654 45556666666665 566666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 004744 402 YFREMKSAGLVPDNVLYTIIINGYCR----NGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCR----AKMLTEADDLF 473 (732)
Q Consensus 402 l~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~ 473 (732)
+|++..+.| +...+..+...|.. .++.++|++.+++..+.+ +...+..+...|.. .+++++|...|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 666666543 45555556666655 566666666666665543 34455555555554 45555666655
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHH
Q 004744 474 NEMLERGVFPDFYTFTTLIHGHCK----DGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKV-----GEMEKANKLWA 544 (732)
Q Consensus 474 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~ 544 (732)
++..+.+ +...+..+...|.. .++.++|+..|+...+.+ +...+..+...|... +++++|...|+
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 5555442 33444444444444 455555555555554432 233344444444443 45555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 004744 545 DMISRKISPNYISYGILINGYCSMG---HVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCR----SGDASKADEFLSKMV 617 (732)
Q Consensus 545 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 617 (732)
+..+.+ +...+..+...|...| ++++|++.|++..+.| +...+..+...|.. .++.++|.+.|++..
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 544432 2333444444444433 4444444444444432 33444444444444 444444444444444
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 004744 618 SEGVDPDSISYNTLINGFVR----EENMDKAFALVSKMEN 653 (732)
Q Consensus 618 ~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 653 (732)
+.+ +...+..|...|.+ .+++++|...|++..+
T Consensus 395 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 395 EQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 432 23344444444444 4444444444444444
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=2.1e-19 Score=185.19 Aligned_cols=332 Identities=10% Similarity=-0.010 Sum_probs=204.0
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 169 NSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVN 248 (732)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (732)
++..+..++..|.+.|++++|+..|+++.+..+. +..++..+...+...|++++|...|+++++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 3567788889999999999999999999887665 78889999999999999999999999998864 567788888899
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 004744 249 ALCKDHKIDSAKMFLCEMEQKGVY--PDTVTYNTL------------INAYCREGFLEEAFQLMNSMSGKGLKPGVFTYN 314 (732)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 314 (732)
.+.+.|++++|...|+++.+.... .+...+..+ ...+...|++++|.+.++++.+... .+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence 999999999999999998877320 133444444 3455555555555555555554422 2445555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCC
Q 004744 315 SLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNG 394 (732)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 394 (732)
.+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~----- 231 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV----- 231 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH-----
Confidence 55555555555555555555555442 334445555555555555555555555555443211 22211111000
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCHHHHH
Q 004744 395 QLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDV----VTYNTILNGLCRAKMLTEAD 470 (732)
Q Consensus 395 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~ 470 (732)
. .......+...+.+.|++++|...++++.+..+. +. ..+..+...+.+.|++++|.
T Consensus 232 ------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 232 ------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp ------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 0 0001112244566666666666666666654333 22 22334556666677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004744 471 DLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFC 531 (732)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 531 (732)
..++++.+..+. +..++..+...+...|++++|...|+++.+... .+...+..+..+..
T Consensus 293 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 293 RICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 777766665332 556666666777777777777777777666532 23444555544443
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=6.3e-17 Score=181.23 Aligned_cols=413 Identities=15% Similarity=0.111 Sum_probs=293.8
Q ss_pred ccCCChHHHHHHHHh--hccChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHH
Q 004744 78 QFRLNSVIIVEVLYR--LRDNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEI 155 (732)
Q Consensus 78 ~~~l~~~~~~~~l~~--~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (732)
+...+|..|.-+... ..+.+..++..++.+......|+.+...-+.++..-.+. +..+..+...+.-
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd---------- 1048 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD---------- 1048 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh----------
Confidence 456677655444433 347899999999988744333666666666666655555 2233333333221
Q ss_pred HHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 004744 156 VDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSG 235 (732)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 235 (732)
......++..+...|.+++|..+|++... .....+.++. ..|++++|.++++++
T Consensus 1049 --------------~~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv---- 1102 (1630)
T 1xi4_A 1049 --------------NYDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC---- 1102 (1630)
T ss_pred --------------hccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc----
Confidence 11133467788889999999999998631 2333344433 678899999988865
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 004744 236 IELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNS 315 (732)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 315 (732)
.+..+|..+..++.+.|++++|...|.+. -|...|..++..+.+.|++++|.+.+....+.. +++...+.
T Consensus 1103 --n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~ 1172 (1630)
T 1xi4_A 1103 --NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETE 1172 (1630)
T ss_pred --CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHH
Confidence 35778889999999999999999999664 277788889999999999999999998877764 33333445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCC
Q 004744 316 LINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQ 395 (732)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 395 (732)
++.+|++.+++++...+ ++ .++...|..+...|...|++++|..+|..+ ..|..++..+++.|+
T Consensus 1173 LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1173 LIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 1236 (1630)
T ss_pred HHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCC
Confidence 88899999888854433 22 456677778899999999999999999874 378899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004744 396 LDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNE 475 (732)
Q Consensus 396 ~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 475 (732)
+++|.+.+++.. +..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++.
T Consensus 1237 ~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1237 YQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998762 66888888889999999998888765432 3677777888999999999999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH----
Q 004744 476 MLERGVFPDFYTFTTLIHGHCK--DGNMNKALNLFDIMTQKSIKP------DIVTYNTLIDGFCKVGEMEKANKLW---- 543 (732)
Q Consensus 476 ~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~---- 543 (732)
.+... ......|+-+...|++ .++..++++.|..-.. +++ +...|..++-.|.+.|+++.|....
T Consensus 1306 aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A 1306 ALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred HhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 77654 2244566666666655 4566677777664332 222 5667888888999999999887322
Q ss_pred ---------HHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004744 544 ---------ADMISRKISPNYISYGILINGYCSMG 569 (732)
Q Consensus 544 ---------~~~~~~~~~~~~~~~~~li~~~~~~g 569 (732)
.+.+. ...++..|...+..|...+
T Consensus 1383 ~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1383 TDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 22221 2346777777777777554
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=3e-19 Score=184.12 Aligned_cols=303 Identities=13% Similarity=0.064 Sum_probs=222.1
Q ss_pred ChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004744 117 SSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLL 196 (732)
Q Consensus 117 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 196 (732)
++..+..++..+.+.|++++|...|.+++.. .+.++.++..++..|...|++++|+..|+++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 63 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG------------------DPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3567888999999999999999999999853 3456789999999999999999999999999
Q ss_pred HHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---CCHHHHHHH------------HHHHHhcCChhHHHH
Q 004744 197 RNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIE---LNVYTLNIM------------VNALCKDHKIDSAKM 261 (732)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~ 261 (732)
.+..+. +..++..+...+.+.|++++|...|+++.+.. + .+...+..+ ...+...|++++|..
T Consensus 64 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 64 IALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 988665 78899999999999999999999999998864 3 355555555 588999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004744 262 FLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGL 341 (732)
Q Consensus 262 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 341 (732)
.++++.+.... +..++..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...+++..+..
T Consensus 142 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~- 218 (359)
T 3ieg_A 142 FLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 218 (359)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 99999987543 778899999999999999999999999998753 378899999999999999999999999998763
Q ss_pred CCCHHhHHHH------------HHHHHcCCCHhHHHHHHHHHHhCCCCCCH----hHHHHHHHHHHhCCCHHHHHHHHHH
Q 004744 342 SPDTATYNTL------------LVESCRKENMSEAEEIFCEMSRRGVAPDI----VSFSTLIGIFSRNGQLDRALMYFRE 405 (732)
Q Consensus 342 ~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~l~~~ 405 (732)
+.+...+..+ ...+.+.|++++|.+.++++.+.... +. ..+..+...+.+.|++++|...+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2233333222 33455555555555555555443211 11 1123344445555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004744 406 MKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEK 444 (732)
Q Consensus 406 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 444 (732)
..+.. +.+..++..+...+...|++++|...+++..+.
T Consensus 298 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 298 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44431 113444444444445555555555555544443
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=1.7e-17 Score=178.67 Aligned_cols=351 Identities=13% Similarity=0.066 Sum_probs=190.2
Q ss_pred CHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----CCCHhHHHHHHHHHHhCCCCCCH
Q 004744 309 GVFTYNSLINGLCK----KGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCR----KENMSEAEEIFCEMSRRGVAPDI 380 (732)
Q Consensus 309 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~ 380 (732)
+..++..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555555555555 555666666666555543 34455555555555 555666666666555543 44
Q ss_pred hHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHH
Q 004744 381 VSFSTLIGIFSR----NGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCR----NGFVLEALKMRDEMLEKGCVMDVVT 452 (732)
Q Consensus 381 ~~~~~l~~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 452 (732)
..+..|...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++|++.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 455555555555 555666666666555543 34455555555554 455666666666555542 4455
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004744 453 YNTILNGLCR----AKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCK----DGNMNKALNLFDIMTQKSIKPDIVTYN 524 (732)
Q Consensus 453 ~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 524 (732)
+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|...|+...+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5555555555 555666666666555543 34445555555544 555666666666555442 334444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004744 525 TLIDGFCK----VGEMEKANKLWADMISRKISPNYISYGILINGYCSM-----GHVTEAFRLWYEMVGKGIKPTLVSCNT 595 (732)
Q Consensus 525 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~ 595 (732)
.+...|.. .++.++|...|++..+.+ +...+..+...|... +++++|+..|++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 44444544 555666666666555443 344445555555554 55666666666555543 3344455
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004744 596 IIKGYCRSG---DASKADEFLSKMVSEGVDPDSISYNTLINGFVR----EENMDKAFALVSKMENQGLVPDVITYNVILT 668 (732)
Q Consensus 596 l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 668 (732)
+...|...| +.++|++.|++..+.| +...+..|...|.. .+++++|.+.+++..+.| ++..+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555555444 4555666666555532 44555555555555 556666666666655533 3445555555
Q ss_pred HHHh----cCCHHHHHHHHHHHHHc
Q 004744 669 GFCR----QGRMHDSELILWRMIEK 689 (732)
Q Consensus 669 ~~~~----~g~~~~A~~~~~~~~~~ 689 (732)
.|.. .++.++|...|+++.+.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 5554 55666666666666553
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.5e-17 Score=180.96 Aligned_cols=431 Identities=9% Similarity=0.014 Sum_probs=239.4
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004744 166 CGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNI 245 (732)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (732)
.|.+..+|..++. +.+.|++++|..+|+++++..|. +...|..++..+.+.|++++|..+|+++++.. |++..|..
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 4556667777776 46667777777777777766544 56667777777777777777777777776642 46666665
Q ss_pred HHHHH-HhcCChhHHHH----HHHHHHhC-CCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHhhCCCCCC
Q 004744 246 MVNAL-CKDHKIDSAKM----FLCEMEQK-GVYP-DTVTYNTLINAYCR---------EGFLEEAFQLMNSMSGKGLKPG 309 (732)
Q Consensus 246 l~~~~-~~~g~~~~A~~----~~~~~~~~-g~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~ 309 (732)
.+... ...|++++|.+ +|++.... |..| +...|...+....+ .|+++.|.++|++.+.....+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 55422 24466665554 55554432 3332 34556555554443 4555666666666555200000
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHH------HhCC---CCCCH
Q 004744 310 VFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEM------SRRG---VAPDI 380 (732)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~g---~~~~~ 380 (732)
...|..........|. .+...++. ...++++.|..++.++ .+.. ++|+.
T Consensus 165 ~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 1112111110000000 00000000 0122334444443331 1110 11110
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHCCCCcCHHH
Q 004744 381 VSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRN----GFV----LEALKMRDEMLEKGCVMDVVT 452 (732)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~ 452 (732)
. ...... ...|...+...... ++. .++..+|++.+...+. ++..
T Consensus 223 ~------------~~~~~~---------------~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~ 274 (530)
T 2ooe_A 223 T------------PQEAQQ---------------VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDI 274 (530)
T ss_dssp -------------CCHHHH---------------HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHH
T ss_pred C------------hhHHHH---------------HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHH
Confidence 0 000000 12232222221111 121 3555666666654322 5666
Q ss_pred HHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004744 453 YNTILNGLCR-------AKMLT-------EADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKP 518 (732)
Q Consensus 453 ~~~li~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 518 (732)
|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+.+++....
T Consensus 275 w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~- 353 (530)
T 2ooe_A 275 WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI- 353 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-
T ss_pred HHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-
Confidence 6666666654 56665 77777777765212225667777777777778888888888877775221
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004744 519 DI-VTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILING-YCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTI 596 (732)
Q Consensus 519 ~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 596 (732)
+. ..|..++..+.+.|++++|.++|++..+... .+...|...+.. +...|+.++|..+|+..++.. +.+...|..+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~ 431 (530)
T 2ooe_A 354 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAY 431 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 22 4677777777777888888888888776522 223333222222 335788888888888887763 4567788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 597 IKGYCRSGDASKADEFLSKMVSEGV-DPD--SISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
+..+.+.|+.++|..+|++.+..+. .|+ ...|...+......|+.+.+..+.+++.+
T Consensus 432 ~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 432 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888888887532 222 44677777777788888888888888877
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=5.4e-17 Score=176.66 Aligned_cols=430 Identities=12% Similarity=0.093 Sum_probs=261.5
Q ss_pred HhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcC
Q 004744 105 DFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQAR 184 (732)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g 184 (732)
+......|. +..+|..++. +.+.|++++|..+|++++ ...|.+...|..++..+.+.|
T Consensus 3 e~al~~~P~---~~~~w~~l~~-~~~~~~~~~a~~~~e~al------------------~~~P~~~~~w~~~~~~~~~~~ 60 (530)
T 2ooe_A 3 EKKLEENPY---DLDAWSILIR-EAQNQPIDKARKTYERLV------------------AQFPSSGRFWKLYIEAEIKAK 60 (530)
T ss_dssp HHHHHHCTT---CHHHHHHHHH-HHHSSCHHHHHHHHHHHH------------------TTCTTCHHHHHHHHHHHHHTT
T ss_pred hhHhhhCCC---CHHHHHHHHH-HHHhCCHHHHHHHHHHHH------------------HHCCCCHHHHHHHHHHHHhcC
Confidence 334455554 7889999998 478999999999999998 446778899999999999999
Q ss_pred ChHHHHHHHHHHHHCCCccCHHHHHHHHHHH-HHcCChHHHHH----HHHHHHHc-CCC-CCHHHHHHHHHHHHh-----
Q 004744 185 KLREGSEVFRLLRNKGICFSINACNSLLGGL-VKIGWVDLARE----VYAEVVRS-GIE-LNVYTLNIMVNALCK----- 252 (732)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~----- 252 (732)
++++|..+|++++... |+...|..++... ...|+++.|.+ +|++++.. |.. ++...|...+....+
T Consensus 61 ~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~ 138 (530)
T 2ooe_A 61 NYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVG 138 (530)
T ss_dssp CHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCS
T ss_pred CHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcc
Confidence 9999999999999875 5777888888643 45678777765 77777653 433 456788888877655
Q ss_pred ----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004744 253 ----DHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDR 328 (732)
Q Consensus 253 ----~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 328 (732)
.|+++.|+.+|++..+....+....|.......-..|. ..+..++. .+.+++++
T Consensus 139 ~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~ 196 (530)
T 2ooe_A 139 SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMN 196 (530)
T ss_dssp STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHH
Confidence 68999999999999984111112334332221111110 00000000 01222333
Q ss_pred HHHHHHHH------HHCC---CCCC--------HHhHHHHHHHHHcC----CCH----hHHHHHHHHHHhCCCCCCHhHH
Q 004744 329 AKEVLDEM------LQMG---LSPD--------TATYNTLLVESCRK----ENM----SEAEEIFCEMSRRGVAPDIVSF 383 (732)
Q Consensus 329 A~~~~~~~------~~~g---~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~g~~~~~~~~ 383 (732)
|..++.+. .+.. ++|+ ...|...+...... ++. ..+..+|++..... +.+...|
T Consensus 197 A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w 275 (530)
T 2ooe_A 197 ARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIW 275 (530)
T ss_dssp HHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 43333331 1110 1222 12333333222111 121 24555666665542 2255666
Q ss_pred HHHHHHHHh-------CCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 004744 384 STLIGIFSR-------NGQLD-------RALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMD 449 (732)
Q Consensus 384 ~~l~~~~~~-------~g~~~-------~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (732)
..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++++..+. +
T Consensus 276 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~ 354 (530)
T 2ooe_A 276 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-D 354 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-C
T ss_pred HHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-C
Confidence 666666554 56655 66777776664212234566666666677777777777777777664322 2
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004744 450 V-VTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHG-HCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLI 527 (732)
Q Consensus 450 ~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 527 (732)
. ..|..++..+.+.|++++|.++|++..+.... +...+...+.. +...|+.++|..+|+..++.. +.+...|..++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~ 432 (530)
T 2ooe_A 355 PTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYI 432 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 2 46666666666777777777777777665322 22222222211 234677777777777776653 23566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004744 528 DGFCKVGEMEKANKLWADMISRKI-SP--NYISYGILINGYCSMGHVTEAFRLWYEMVGK 584 (732)
Q Consensus 528 ~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 584 (732)
..+.+.|+.++|..+|++.+.... .| ....|...+......|+.+.+..++.++.+.
T Consensus 433 ~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 433 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777776532 22 2336666677667777777777777777654
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=9.1e-19 Score=178.20 Aligned_cols=291 Identities=11% Similarity=-0.018 Sum_probs=215.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 414 DNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIH 493 (732)
Q Consensus 414 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 493 (732)
+...+..++..+...|++++|+++++++.+..+. +...+..++..+...|++++|..+++++.+..+. +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 4445556666666777777777777777665433 4455555666677777777777777777766443 5566777777
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004744 494 GHCKDG-NMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVT 572 (732)
Q Consensus 494 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 572 (732)
.+...| ++++|...++.+.+... .+...+..+...+...|++++|...++++.+.... +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 777777 78888888887776543 25666777788888888888888888888776432 4566666888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHH
Q 004744 573 EAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEG--------VDPDSISYNTLINGFVREENMDKA 644 (732)
Q Consensus 573 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A 644 (732)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .+.....+..++..+.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888764 5567788888888888888888888888887631 133457888888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH-HhcCCHH
Q 004744 645 FALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGH-VSQNNLK 712 (732)
Q Consensus 645 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~-~~~g~~~ 712 (732)
...++++.+.. +.+...|..++..+.+.|++++|...++++.+ +.| +...+..+..++ ...|+.+
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 99999988742 23567888889999999999999999999988 677 567888888888 4556643
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.8e-18 Score=175.95 Aligned_cols=288 Identities=11% Similarity=-0.014 Sum_probs=197.9
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004744 166 CGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNI 245 (732)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (732)
.+.++.++..++..+...|++++|+++|+++.+..+. +...+..++..+.+.|++++|..+++++++.. +.+..++..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 4456677788888888889999999999998887655 56667777788888888888888888888764 566777888
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 004744 246 MVNALCKDH-KIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKG 324 (732)
Q Consensus 246 l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 324 (732)
+...+...| ++++|...|+++.+.... +..+|..+...+...|++++|.+.++++.+.... +...+..+...|...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 888888888 888888888888876433 5667788888888888888888888888765332 4566666777777888
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCC--------CCCCHhHHHHHHHHHHhCCCH
Q 004744 325 RCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRG--------VAPDIVSFSTLIGIFSRNGQL 396 (732)
Q Consensus 325 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--------~~~~~~~~~~l~~~~~~~g~~ 396 (732)
++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.. .+.+..++..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 8888888887777653 3455667777777777777777777777665421 012334566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 004744 397 DRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGL 460 (732)
Q Consensus 397 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 460 (732)
++|...+++..+... .+...+..+...+.+.|++++|.+.+++..+..+. +...+..+..++
T Consensus 253 ~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 AEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 666666666655422 24445555555555666666666665555554322 444444444444
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=9.1e-19 Score=181.32 Aligned_cols=262 Identities=11% Similarity=-0.006 Sum_probs=179.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004744 452 TYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFC 531 (732)
Q Consensus 452 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 531 (732)
.+..+...+.+.|++++|...|+++.+..+. +..++..+...+...|++++|+..++++.+... .+..++..+...|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 3444444455555555555555555544322 444444555555555555555555555544321 24444455555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHH----------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHH
Q 004744 532 KVGEMEKANKLWADMISRKISPNYISY----------------GILINGYCSMGHVTEAFRLWYEMVGKGIKP--TLVSC 593 (732)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~ 593 (732)
..|++++|...++++.+.... +...+ ..+.. +...|++++|+..|+++.+.. +. +..++
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 220 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQ 220 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHH
Confidence 555555555555555543221 11111 12333 338899999999999998864 33 57889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004744 594 NTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQ 673 (732)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 673 (732)
..+...|.+.|++++|++.++++++.. +.+...+..++..+.+.|++++|+..++++.+.. +.+...|..++.+|.+.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 999999999999999999999998753 3357889999999999999999999999998842 33577899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 674 GRMHDSELILWRMIEKGLNPD------------RSTYTTLINGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 674 g~~~~A~~~~~~~~~~g~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 722 (732)
|++++|...|+++.+ +.|+ ..+|..++.+|...|++++|..++++.+
T Consensus 299 g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 299 GAHREAVEHFLEALN--MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp TCHHHHHHHHHHHHH--HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHH--hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 999999999999987 3332 5889999999999999999999887544
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.3e-17 Score=168.33 Aligned_cols=281 Identities=14% Similarity=0.087 Sum_probs=117.0
Q ss_pred HcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 004744 182 QARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKM 261 (732)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (732)
+.|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5677899999999883 335899999999999999999999964 3567788888899999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004744 262 FLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGL 341 (732)
Q Consensus 262 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 341 (732)
.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777764 4567788889999999999999888775 257778999999999999999999999866
Q ss_pred CCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004744 342 SPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTII 421 (732)
Q Consensus 342 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l 421 (732)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+ ...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 36888888889999999998888887 17788888888888888888886555432 2233345567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHH
Q 004744 422 INGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRA--KMLTEADDLFNEMLERGVFP------DFYTFTTLIH 493 (732)
Q Consensus 422 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~A~~~~~~~~~~~~~~------~~~~~~~li~ 493 (732)
+..|.+.|++++|+.+++..+... +.-...|+-+...|++- ++..+.++.|..- .+++| +...|..++.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHH
Confidence 788888888888888888877654 33566677776666654 2333444443311 11111 2345666666
Q ss_pred HHHhcCCHHHHHH
Q 004744 494 GHCKDGNMNKALN 506 (732)
Q Consensus 494 ~~~~~g~~~~A~~ 506 (732)
.|...++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 6666666666654
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=4e-18 Score=176.49 Aligned_cols=307 Identities=9% Similarity=-0.040 Sum_probs=191.2
Q ss_pred HHHcCCCHhHHHH-HHHHHHhCCCC-C--CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004744 354 ESCRKENMSEAEE-IFCEMSRRGVA-P--DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNG 429 (732)
Q Consensus 354 ~~~~~g~~~~A~~-~~~~~~~~g~~-~--~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g 429 (732)
++...|++++|.+ .+.+....... | +...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3444556666665 55544332111 1 23345555566666666666666666665542 224455555555556666
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 430 FVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFD 509 (732)
Q Consensus 430 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 509 (732)
++++|+..++++.+..+. +..++..+...+...|++++|...++++.+..+. +...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence 666666666555554332 4555555555555555555555555555554322 11111110000 00
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004744 510 IMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISP-NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKP 588 (732)
Q Consensus 510 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 588 (732)
. ..+. ..+.. +..+...|++++|...|+++.+..... +..++..+...|...|++++|+..|+++.+.. +.
T Consensus 178 -~----~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 0000 01112 223337889999999999988764332 57888889999999999999999999988763 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------
Q 004744 589 TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD--------- 659 (732)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--------- 659 (732)
+..++..+...+.+.|++++|++.++++++.. +.+...+..++..|.+.|++++|...++++.+. .|+
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~ 326 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGG 326 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCcccccc
Confidence 67889999999999999999999999988753 345778889999999999999999999998873 222
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 660 ---VITYNVILTGFCRQGRMHDSELILWRMI 687 (732)
Q Consensus 660 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 687 (732)
..+|..++.+|...|+.++|..++++.+
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 5789999999999999999998877554
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=8.7e-19 Score=176.73 Aligned_cols=283 Identities=11% Similarity=0.086 Sum_probs=135.8
Q ss_pred HhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHH
Q 004744 129 VRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINAC 208 (732)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 208 (732)
-+.|++++|.++++++- .+.+|..|+.++.+.|++++|++.|.+. +|...|
T Consensus 14 ~~~~~ld~A~~fae~~~-----------------------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y 64 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN-----------------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSY 64 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC-----------------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHH
Confidence 46677888888887662 2469999999999999999999999764 377799
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004744 209 NSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCRE 288 (732)
Q Consensus 209 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 288 (732)
..++.++...|++++|+.++..+++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...
T Consensus 65 ~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~ 135 (449)
T 1b89_A 65 MEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDE 135 (449)
T ss_dssp ----------------------------------------------CHHHHTTTTT-------CC---------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHc
Confidence 99999999999999999988877764 5568889999999999999999998884 36778999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHH
Q 004744 289 GFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIF 368 (732)
Q Consensus 289 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 368 (732)
|.+++|...|..+ ..|..++.++.+.|++++|.+.++++ .+..+|..++.+|+..|+++.|....
T Consensus 136 g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~ 200 (449)
T 1b89_A 136 KMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 200 (449)
T ss_dssp -CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred CCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999977 36999999999999999999999998 27899999999999999999996655
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCC
Q 004744 369 CEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRN--GFVLEALKMRDEMLEKGC 446 (732)
Q Consensus 369 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~ 446 (732)
..+. .++.....++..|.+.|++++|..+++...... +.....|+.+..+|++- +++.+.++.|..-+ ++
T Consensus 201 l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni 272 (449)
T 1b89_A 201 LHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NI 272 (449)
T ss_dssp TTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CH
T ss_pred HHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cC
Confidence 5432 244445679999999999999999999988654 44567788887777764 44555555554211 12
Q ss_pred Cc------CHHHHHHHHHHHHhcCCHHHHHHH
Q 004744 447 VM------DVVTYNTILNGLCRAKMLTEADDL 472 (732)
Q Consensus 447 ~~------~~~~~~~li~~~~~~~~~~~A~~~ 472 (732)
++ +...|..+...|.+.++++.|...
T Consensus 273 ~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 273 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 21 456788899999999999988763
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=9.3e-17 Score=172.37 Aligned_cols=388 Identities=10% Similarity=-0.025 Sum_probs=227.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHC--------CCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhC-----C
Q 004744 309 GVFTYNSLINGLCKKGRCDRAKEVLDEMLQM--------GLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRR-----G 375 (732)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g 375 (732)
....|+.|...+...|++++|++.|++.++. .-+....+|+.+...|...|++++|...++++.+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4556888888888888888888888877542 11223457777888888888888888887776531 1
Q ss_pred -C-CCCHhHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHCCCCc
Q 004744 376 -V-APDIVSFSTLIGIFSR--NGQLDRALMYFREMKSAGLVPDNVLYTIIING---YCRNGFVLEALKMRDEMLEKGCVM 448 (732)
Q Consensus 376 -~-~~~~~~~~~l~~~~~~--~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~ 448 (732)
. .....++..+..++.. .+++++|...|++..+.... +...+..+... +...++.++|++.+++.++..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 0 1124455555544443 34577777777777665322 34444444433 33456666777777776665433
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004744 449 DVVTYNTILNGLCR----AKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYN 524 (732)
Q Consensus 449 ~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 524 (732)
+...+..+...+.. .+++++|.+++++.....+. +..++..+...|...|++++|+..++++.+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 45555555444433 35566777777777665443 5666777777777777777777777777665322 445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004744 525 TLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSG 604 (732)
Q Consensus 525 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 604 (732)
.+...|...+.... ... ...........+..++|...+++..+.. +.+..++..+...|...|
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 55544432211100 000 0000011112234678888888887764 556677888889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004744 605 DASKADEFLSKMVSEGVDPDS--ISYNTLIN-GFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSEL 681 (732)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 681 (732)
++++|++.|++.++....+.. ..+..+.. .+...|++++|+..+++..+ +.|+...... ..+.+..
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHH
Confidence 999999999999875433222 12223332 24577899999999999988 5676543322 2344556
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCC
Q 004744 682 ILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAFRFHDEMLQR-GFVPDD 730 (732)
Q Consensus 682 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~pd~ 730 (732)
++++.++ ..| +..+|..|+.+|...|++++|.+.+++.++. ...|+.
T Consensus 418 ~~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 418 IAKMRLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHH--HCC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 6777776 455 5688999999999999999999999999874 344544
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=5.5e-18 Score=175.25 Aligned_cols=261 Identities=8% Similarity=-0.034 Sum_probs=179.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004744 453 YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCK 532 (732)
Q Consensus 453 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 532 (732)
+..+...+.+.|++++|...|+++.+..+. +..++..+...+...|++++|+..|+++.+... .+...+..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHc
Confidence 444555555555555555555555554332 445555555555555555555555555554422 244555555555556
Q ss_pred cCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHH
Q 004744 533 VGEMEKANKLWADMISRKIS---------PNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKP--TLVSCNTIIKGYC 601 (732)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 601 (732)
.|++++|...|+++.+.... .....+..+...+...|++++|+..++++.+.. +. +..++..+...|.
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHH
Confidence 66666666666555543110 012334456778888999999999999998874 33 6888999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 004744 602 RSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSE 680 (732)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 680 (732)
..|++++|++.++++++.. +.+..+|..++..|.+.|++++|+..++++.+. .| +..+|..++.+|.+.|++++|.
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999998853 346788999999999999999999999999984 45 4778999999999999999999
Q ss_pred HHHHHHHHcCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 681 LILWRMIEKGLNPD-------------RSTYTTLINGHVSQNNLKEAFRFHDEM 721 (732)
Q Consensus 681 ~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~m 721 (732)
..|+++++ +.|+ ...|..+..++...|+.+.|.+..++-
T Consensus 302 ~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 302 SNFLTALS--LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHH--HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHH--hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99999987 3332 578999999999999999998877653
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=1.4e-17 Score=172.15 Aligned_cols=235 Identities=12% Similarity=-0.073 Sum_probs=171.8
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 169 NSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVN 248 (732)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (732)
+...|..++..|.+.|++++|+..|+++++..+. +..+|..+...+.+.|++++|.+.|+++++.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3455888999999999999999999999988765 78899999999999999999999999998875 667888999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-CCHhhHHHHH
Q 004744 249 ALCKDHKIDSAKMFLCEMEQKGVYPDT----------VTYNTLINAYCREGFLEEAFQLMNSMSGKGLK-PGVFTYNSLI 317 (732)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~~g~~p~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li 317 (732)
+|.+.|++++|...|+++.+.... +. ..+..+...+.+.|++++|.+.++++...... ++..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998876321 11 12233466777778888888888877765322 1466777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHH
Q 004744 318 NGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLD 397 (732)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 397 (732)
..|...|++++|...|+++++.. +.+..+|..+...|...|++++|.+.|+++.+... .+..++..+...|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHH
Confidence 77777777777777777777653 34566777777777777777777777777766532 24666677777777777777
Q ss_pred HHHHHHHHHHH
Q 004744 398 RALMYFREMKS 408 (732)
Q Consensus 398 ~A~~l~~~~~~ 408 (732)
+|...|+++.+
T Consensus 299 ~A~~~~~~al~ 309 (365)
T 4eqf_A 299 EAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=3.5e-17 Score=166.17 Aligned_cols=234 Identities=12% Similarity=-0.052 Sum_probs=154.6
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 169 NSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVN 248 (732)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (732)
+...+..++..+...|++++|+..|+++.+..+. +..++..+...+.+.|++++|.+.|+++++.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 3455778888999999999999999999987665 78889999999999999999999999998875 667888888899
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHhhCCCCCCHhhH
Q 004744 249 ALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTL--------------IN-AYCREGFLEEAFQLMNSMSGKGLKPGVFTY 313 (732)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 313 (732)
.+...|++++|...++++.+.... +...+..+ .. .+...|++++|.+.++++.+.... +..++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 999999999999999998887432 23333333 11 244556666666666666554322 45555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhC
Q 004744 314 NSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRN 393 (732)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 393 (732)
..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+... .+...+..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHh
Confidence 566666666666666666666655442 23344555555555555555555555555544321 1344555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 004744 394 GQLDRALMYFREMKS 408 (732)
Q Consensus 394 g~~~~A~~l~~~~~~ 408 (732)
|++++|.+.++++.+
T Consensus 254 g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIY 268 (327)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 555555555555444
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.5e-16 Score=169.07 Aligned_cols=394 Identities=10% Similarity=-0.107 Sum_probs=245.0
Q ss_pred CCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHH
Q 004744 115 KHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFR 194 (732)
Q Consensus 115 ~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 194 (732)
.+....|+.|..++...|++++|++.|.+++.-.. .... -...+....+|..++.+|...|++++|...|+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~--------~~~~-~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ 118 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ--------QEHA-DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVD 118 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------HHSG-GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--------hcCc-cccchHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34567899999999999999999999999874210 0000 01234457789999999999999999999999
Q ss_pred HHHHCC-----C--ccCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCChhHHHHH
Q 004744 195 LLRNKG-----I--CFSINACNSLLGGLVKI--GWVDLAREVYAEVVRSGIELNVYTLNIMVNAL---CKDHKIDSAKMF 262 (732)
Q Consensus 195 ~~~~~~-----~--~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~ 262 (732)
++.+.. . .....++..+..++.+. +++++|.+.|+++++.. |.++..+..+..++ ...++.++|.+.
T Consensus 119 ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~ 197 (472)
T 4g1t_A 119 KVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDP 197 (472)
T ss_dssp HHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred HHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 887531 1 11356677776666654 46999999999999875 55666666665553 456788899999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004744 263 LCEMEQKGVYPDTVTYNTLINAYCR----EGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQ 338 (732)
Q Consensus 263 ~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 338 (732)
+++..+..+. +..++..+...+.. .|++++|.+.+++....... +..++..+...|...|++++|...+++..+
T Consensus 198 ~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 198 LRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 9998887533 56666666655554 46788999999998876433 678899999999999999999999999988
Q ss_pred CCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004744 339 MGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLY 418 (732)
Q Consensus 339 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~ 418 (732)
.. +.+..++..+...|...+... .... ...........+..++|...+++..+... .+..++
T Consensus 276 ~~-p~~~~~~~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 337 (472)
T 4g1t_A 276 YI-PNNAYLHCQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVC 337 (472)
T ss_dssp HS-TTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCH
T ss_pred hC-CChHHHHHHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhh
Confidence 64 345567777766653221110 0000 00001111112235667777777665432 234456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004744 419 TIIINGYCRNGFVLEALKMRDEMLEKGCVMDVV--TYNTILN-GLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGH 495 (732)
Q Consensus 419 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 495 (732)
..+...|...|++++|+..|++.++....+... .+..+.. .+.+.|+.++|+..|++.++... +.....
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~~------ 409 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREKE------ 409 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHHH------
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHH------
Confidence 667777777777777777777777654332211 1222222 23466778888888887776533 222111
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004744 496 CKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRK 550 (732)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 550 (732)
+..+.+..+++..+..+ +.+..+|..+...|...|++++|++.|++.++.+
T Consensus 410 ---~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 410 ---KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp ---HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred ---HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 12233445555555443 3366777888888888888888888888887754
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=2.4e-17 Score=167.36 Aligned_cols=267 Identities=9% Similarity=-0.041 Sum_probs=224.2
Q ss_pred ChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004744 117 SSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLL 196 (732)
Q Consensus 117 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 196 (732)
+...|..++..+.+.|++++|..+|.+++.. .+.+..+|..++..|.+.|++++|+..|+++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 81 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA------------------APEREEAWRSLGLTQAENEKDGLAIIALNHA 81 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456778889999999999999999999853 3456788999999999999999999999999
Q ss_pred HHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCChhHHHH
Q 004744 197 RNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIM--------------VN-ALCKDHKIDSAKM 261 (732)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~ 261 (732)
.+..+. +..++..+...+...|++++|.+.|+++.+.. +.+...+..+ .. .+...|++++|..
T Consensus 82 ~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 82 RMLDPK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHH
T ss_pred HhcCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 988655 78899999999999999999999999999864 3344444433 33 4778899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004744 262 FLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGL 341 (732)
Q Consensus 262 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 341 (732)
.++++.+.... +..++..++..|.+.|++++|.+.++++.+... .+..+|..+...+...|++++|...++++.+..
T Consensus 160 ~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 160 LLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 99999987543 788899999999999999999999999987643 368889999999999999999999999998864
Q ss_pred CCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCC-----------CHhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004744 342 SPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAP-----------DIVSFSTLIGIFSRNGQLDRALMYFREM 406 (732)
Q Consensus 342 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-----------~~~~~~~l~~~~~~~g~~~~A~~l~~~~ 406 (732)
+.+..++..+...+...|++++|.+.++++.+..... +...|..+...+.+.|+.++|..++++.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4567889999999999999999999999987753321 4678888889999999999998887654
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=1.1e-16 Score=158.63 Aligned_cols=275 Identities=7% Similarity=0.013 Sum_probs=202.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004744 422 INGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNM 501 (732)
Q Consensus 422 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 501 (732)
++-....|++..|+...+......+.........+..+|...|+++.|+..++. ...|+..++..+...+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 345567889999998887765543222233556677888999999998876654 2345677888888888888999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004744 502 NKALNLFDIMTQKSIKP-DIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYE 580 (732)
Q Consensus 502 ~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 580 (732)
++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999888766434 556666777888899999999998876 45778888888899999999999999999
Q ss_pred HHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004744 581 MVGKGIKPTLVSC---NTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLV 657 (732)
Q Consensus 581 ~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 657 (732)
+.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++.+. .
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~ 230 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--D 230 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 88763 443211 12233344458899999999998886 3457788888999999999999999999998883 4
Q ss_pred C-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004744 658 P-DVITYNVILTGFCRQGRMHD-SELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFR 716 (732)
Q Consensus 658 p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 716 (732)
| +..++..++..+...|+.++ +..+++++.+ +.|+... +.+...+.+.++++..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---HHHHHHHHHHHHHHHH
Confidence 5 56788888888888888876 5688888888 7776432 2233445555555543
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=4.3e-16 Score=154.37 Aligned_cols=256 Identities=11% Similarity=0.044 Sum_probs=175.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 004744 388 GIFSRNGQLDRALMYFREMKSAGLVPDN--VLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKM 465 (732)
Q Consensus 388 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 465 (732)
.-....|++..|+..++..... .|+. .....+.++|...|++++|+..++. ...|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 4455678888888877765433 2332 3445567778888888888765543 134466677777777888888
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 466 LTEADDLFNEMLERGVFP-DFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWA 544 (732)
Q Consensus 466 ~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 544 (732)
.++|++.++++...+..| +...+..+...+...|++++|+..++. +.+...+..++..|.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888877765433 455666667777888888888887776 3466777777788888888888888888
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004744 545 DMISRKISPNYISY---GILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGV 621 (732)
Q Consensus 545 ~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 621 (732)
++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++++..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 887763 332211 22334444557788888888888776 36677778888888888888888888888877643
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHH
Q 004744 622 DPDSISYNTLINGFVREENMDK-AFALVSKMENQGLVPDVI 661 (732)
Q Consensus 622 ~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~g~~p~~~ 661 (732)
+.+..++..++..+...|+.++ +.++++++.+ +.|+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 2356677777777777887765 5677777777 456543
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=5.2e-18 Score=184.29 Aligned_cols=117 Identities=14% Similarity=0.138 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 004744 205 INACNSLLGGLVKIGWVDLAREVYAEVV---RSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTL 281 (732)
Q Consensus 205 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 281 (732)
..+||+||++|++.|++++|.++|.+|. +.|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||++|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4456666666666666666666665543 2355566666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCC-HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 004744 282 INAYCREGF-LEEAFQLMNSMSGKGLKPGVFTYNSLINGLC 321 (732)
Q Consensus 282 i~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 321 (732)
|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 666666655 3555566666666666666666665554443
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=180.16 Aligned_cols=153 Identities=12% Similarity=0.130 Sum_probs=127.5
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 004744 166 CGSNSLIFDLVIRTYVQARKLREGSEVFRLLRN---KGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYT 242 (732)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 242 (732)
+.....+|++||++|++.|++++|.++|++|.+ .|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||+.|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 445577899999999999999999999988764 58999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC------HhhHHH
Q 004744 243 LNIMVNALCKDHKI-DSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPG------VFTYNS 315 (732)
Q Consensus 243 ~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ 315 (732)
||++|+++|+.|+. ++|.++|++|.+.|+.||.++|++++.++.+. .+++..+++ ..++.|+ +.+...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHH
Confidence 99999999999985 78999999999999999999999999877665 344444444 3344443 344444
Q ss_pred HHHHHHhc
Q 004744 316 LINGLCKK 323 (732)
Q Consensus 316 li~~~~~~ 323 (732)
|.+.|.+.
T Consensus 278 L~dl~s~d 285 (1134)
T 3spa_A 278 LRDVYAKD 285 (1134)
T ss_dssp THHHHCCC
T ss_pred HHHHHccC
Confidence 55555443
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=3.2e-15 Score=141.42 Aligned_cols=200 Identities=13% Similarity=-0.045 Sum_probs=153.4
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004744 167 GSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIM 246 (732)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 246 (732)
|.++..+..++..+.+.|++++|+..|+++++..+. +...+..+..++.+.|++++|...|+++++.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 345678888999999999999999999999988776 88899999999999999999999999998875 6677888888
Q ss_pred HHHHHhc-----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 004744 247 VNALCKD-----------HKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNS 315 (732)
Q Consensus 247 ~~~~~~~-----------g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 315 (732)
..++.+. |++++|+..|++..+..+. +...|..+...|...|++++|++.|++..+.+ .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999888 8888888888888876433 56778888888888888888888888888776 57788888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHH
Q 004744 316 LINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMS 372 (732)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (732)
+...|...|++++|...|++.++.. +.+...+..+...+...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888887754 4456677777888888888888888776653
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=3.9e-15 Score=140.81 Aligned_cols=199 Identities=15% Similarity=0.028 Sum_probs=168.2
Q ss_pred CChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHH
Q 004744 116 HSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRL 195 (732)
Q Consensus 116 ~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 195 (732)
.++..+..+..++.+.|++++|...|.+++ ...|.++..|..++..|.+.|++++|+..|++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 64 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERAL------------------KENPQDPEALYWLARTQLKLGLVNPALENGKT 64 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367789999999999999999999999998 44667889999999999999999999999999
Q ss_pred HHHCCCccCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004744 196 LRNKGICFSINACNSLLGGLVKI-----------GWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLC 264 (732)
Q Consensus 196 ~~~~~~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (732)
+++..+. +...+..+..++.+. |++++|...|+++++.. |.+..++..+..++...|++++|+..|+
T Consensus 65 al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 142 (217)
T 2pl2_A 65 LVARTPR-YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLK 142 (217)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 9998876 888999999999999 99999999999999875 6678899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004744 265 EMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEML 337 (732)
Q Consensus 265 ~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 337 (732)
+..+.. .+...+..+...|...|++++|+..|++..+..+. +...+..+...+.+.|++++|...|++..
T Consensus 143 ~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 143 QALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999987 58899999999999999999999999999887443 77889999999999999999999998764
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=4.7e-15 Score=157.02 Aligned_cols=188 Identities=13% Similarity=0.080 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004744 452 TYNTILNGLCRAK---MLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKD----GNMNKALNLFDIMTQKSIKPDIVTYN 524 (732)
Q Consensus 452 ~~~~li~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~ 524 (732)
.+..+...|.+.| +.++|++.|++..+.|.. +...+..+...|... +++++|+..|+... . -+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 4445555555555 555555555555555432 333334444444332 45556666655554 2 2333444
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004744 525 TLIDG-F--CKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMG-----HVTEAFRLWYEMVGKGIKPTLVSCNTI 596 (732)
Q Consensus 525 ~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l 596 (732)
.+... | ...+++++|.+.|++..+.| +...+..|...|. .| ++++|+..|++.. .| +...+..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence 44444 2 23556666666666655554 4445555555554 33 6666666666555 22 44555555
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 004744 597 IKGYCR----SGDASKADEFLSKMVSEGVDPDSISYNTLINGFVR----EENMDKAFALVSKMENQG 655 (732)
Q Consensus 597 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g 655 (732)
...|.. ..+.++|.+.|++..+.|. ......|..+|.. ..+.++|...++...+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 555544 2256666666666655442 2233344444442 345666666666666554
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=8.7e-15 Score=154.93 Aligned_cols=188 Identities=8% Similarity=-0.050 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCcCHHHHH
Q 004744 382 SFSTLIGIFSRNG---QLDRALMYFREMKSAGLVPDNVLYTIIINGYCRN----GFVLEALKMRDEMLEKGCVMDVVTYN 454 (732)
Q Consensus 382 ~~~~l~~~~~~~g---~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~ 454 (732)
.+..+...|...| +.++|++.|++..+.|.. +...+..+...|... +++++|+..|++.. . -++..+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 4444444444444 444555555544444322 222223333333222 34444444444444 1 1333333
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004744 455 TILNG-L--CRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDG-----NMNKALNLFDIMTQKSIKPDIVTYNTL 526 (732)
Q Consensus 455 ~li~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l 526 (732)
.+... + ...+++++|.+.|++..+.| +...+..|...|. .| ++++|+..|++.. . -+...+..|
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHH
Confidence 33333 2 23445555555555544443 3334444444443 22 4555555554444 1 133333334
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 004744 527 IDGFCK----VGEMEKANKLWADMISRKISPNYISYGILINGYCS----MGHVTEAFRLWYEMVGKG 585 (732)
Q Consensus 527 i~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~ 585 (732)
...|.. ..++++|...|++..+.| +......|..+|.. ..+.++|...|+...+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 433333 124445555555444443 22223333333332 234444555554444443
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=2.3e-14 Score=146.82 Aligned_cols=251 Identities=9% Similarity=0.033 Sum_probs=207.1
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHH
Q 004744 166 CGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGW-VDLAREVYAEVVRSGIELNVYTLN 244 (732)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~ 244 (732)
.+.+..+|..+...|.+.|++++|+..|+++++.++. +..+|+.+..++.+.|+ +++|+..|+++++.. +.+..+|.
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~ 170 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWH 170 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 3455778899999999999999999999999998877 89999999999999997 999999999999976 67888999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-c
Q 004744 245 IMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCK-K 323 (732)
Q Consensus 245 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~ 323 (732)
.+..++.+.|++++|+..|+++++.... +..+|..+..++.+.|++++|++.++++++.+.. +..+|+.+..++.+ .
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998654 7889999999999999999999999999987654 78899999999999 6
Q ss_pred CChhHH-----HHHHHHHHHCCCCCCHHhHHHHHHHHHcCC--CHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCC--
Q 004744 324 GRCDRA-----KEVLDEMLQMGLSPDTATYNTLLVESCRKE--NMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNG-- 394 (732)
Q Consensus 324 g~~~~A-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-- 394 (732)
|..++| +..|++.++.. +-+...|+.+...+...| ++++|.+.+.++ +.. +.+...+..++.+|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcc
Confidence 665888 48888888764 446678888888888887 588888888887 432 336777888888888764
Q ss_pred -------CHHHHHHHHHHH-HHCCCCCC-HHHHHHHHHHH
Q 004744 395 -------QLDRALMYFREM-KSAGLVPD-NVLYTIIINGY 425 (732)
Q Consensus 395 -------~~~~A~~l~~~~-~~~~~~~~-~~~~~~li~~~ 425 (732)
..++|.++|+++ .+. .|. ...|..+...+
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 258888888887 554 333 34455444443
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=2.3e-14 Score=146.69 Aligned_cols=249 Identities=11% Similarity=0.010 Sum_probs=212.7
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCC-hHHHHHHHHHH
Q 004744 118 SMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARK-LREGSEVFRLL 196 (732)
Q Consensus 118 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~ 196 (732)
..+|..+..++.+.|++++|+..+.+++.. .+.+..+|..++..|.+.|+ +++|+..|+++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l------------------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~a 158 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL------------------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAI 158 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh------------------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence 577888999999999999999999999854 45678899999999999997 99999999999
Q ss_pred HHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004744 197 RNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTV 276 (732)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 276 (732)
++.++. +..+|+.+..++.+.|++++|+..|+++++.. +.+..+|..+..++.+.|++++|+..|+++++..+. +..
T Consensus 159 l~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~ 235 (382)
T 2h6f_A 159 IEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNS 235 (382)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHH
T ss_pred HHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHH
Confidence 999877 89999999999999999999999999999986 778899999999999999999999999999998654 788
Q ss_pred HHHHHHHHHHH-cCCHHHH-----HHHHHHHhhCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHhH
Q 004744 277 TYNTLINAYCR-EGFLEEA-----FQLMNSMSGKGLKPGVFTYNSLINGLCKKG--RCDRAKEVLDEMLQMGLSPDTATY 348 (732)
Q Consensus 277 ~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~ 348 (732)
+|+.+...+.+ .|..++| ++.|++.+..... +...|+.+...+.+.| ++++|.+.+.++ +.. +.+...+
T Consensus 236 a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al 312 (382)
T 2h6f_A 236 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLI 312 (382)
T ss_dssp HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHH
Confidence 99999999999 6665888 5889998886544 7789999999999988 689999999988 432 4567788
Q ss_pred HHHHHHHHcCC---------CHhHHHHHHHHH-HhCCCCCCHhHHHHHHHHHH
Q 004744 349 NTLLVESCRKE---------NMSEAEEIFCEM-SRRGVAPDIVSFSTLIGIFS 391 (732)
Q Consensus 349 ~~li~~~~~~g---------~~~~A~~~~~~~-~~~g~~~~~~~~~~l~~~~~ 391 (732)
..++..|.+.| ..++|.++++++ .+.+. .....|..+...+.
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHH
Confidence 89999998874 358999999999 66532 24556666665543
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2e-14 Score=140.09 Aligned_cols=225 Identities=12% Similarity=0.101 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHH
Q 004744 450 VVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIK--PD----IVTY 523 (732)
Q Consensus 450 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 523 (732)
...+..+...+...|++++|...|+++.+.. .+..++..+...+...|++++|+..++.+.+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4566777777777888888888888777766 46677777777777788888888777777654211 11 4566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004744 524 NTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRS 603 (732)
Q Consensus 524 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 603 (732)
..+...+...|++++|...|+++.+. .|+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 66777777777777777777777764 2332 34555566777777777776652 33455666666677777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004744 604 GDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELIL 683 (732)
Q Consensus 604 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 683 (732)
|++++|.+.++++++.. +.+...+..++..+.+.|++++|...++++.+.. +.+...|..++.++.+.|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 77777777777776643 2345666667777777777777777777776631 223556666777777777777777777
Q ss_pred HHHHH
Q 004744 684 WRMIE 688 (732)
Q Consensus 684 ~~~~~ 688 (732)
+++.+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.2e-14 Score=138.67 Aligned_cols=223 Identities=12% Similarity=0.095 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHH
Q 004744 486 YTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKIS--PN----YISYG 559 (732)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~ 559 (732)
..+..+...+...|++++|+..|+++.+.. .+...+..+...+...|++++|...++++.+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555556666666666666655554 45555555566666666666666666655543211 01 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004744 560 ILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREE 639 (732)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 639 (732)
.+...|...|++++|+..|+++.+. .|+. ..+.+.|++++|.+.++++.... +.+...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 5555666666666666666665553 2332 23444455566666666655532 112344555555566666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004744 640 NMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAFRFH 718 (732)
Q Consensus 640 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 718 (732)
++++|...++++.+.. +.+..+|..++..+...|++++|...++++++ ..| +...|..++.+|...|++++|.+.+
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666666666655531 22345555556666666666666666666655 334 2455556666666666666666666
Q ss_pred HHHHH
Q 004744 719 DEMLQ 723 (732)
Q Consensus 719 ~~m~~ 723 (732)
+++++
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=7.2e-13 Score=130.38 Aligned_cols=222 Identities=14% Similarity=0.003 Sum_probs=151.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004744 449 DVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCK----DGNMNKALNLFDIMTQKSIKPDIVTYN 524 (732)
Q Consensus 449 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 524 (732)
++.++..+...+...|++++|...|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55666677777777777777777777777632 45566667777777 777777777777777654 556666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004744 525 TLIDGFCK----VGEMEKANKLWADMISRKISPNYISYGILINGYCS----MGHVTEAFRLWYEMVGKGIKPTLVSCNTI 596 (732)
Q Consensus 525 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 596 (732)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 67777777 777777777777777653 56666667777776 777777777777777654 45556666
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004744 597 IKGYCR----SGDASKADEFLSKMVSEGVDPDSISYNTLINGFVR----EENMDKAFALVSKMENQGLVPDVITYNVILT 668 (732)
Q Consensus 597 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 668 (732)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 677777777777776643 45566666666666 677777777777776642 2555666666
Q ss_pred HHHh----cCCHHHHHHHHHHHHH
Q 004744 669 GFCR----QGRMHDSELILWRMIE 688 (732)
Q Consensus 669 ~~~~----~g~~~~A~~~~~~~~~ 688 (732)
.|.. .|++++|..+|+++.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHH
Confidence 6666 6777777777777766
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=7.5e-14 Score=137.34 Aligned_cols=249 Identities=12% Similarity=0.047 Sum_probs=159.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 004744 452 TYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPD--IVTYNTLIDG 529 (732)
Q Consensus 452 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~ 529 (732)
.+......+...|++++|+..|+++.+..+. +...+..+...+...|++++|+..++.+.+....++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3444556667777777777777777766433 444666677777777777777777777766321111 2336667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004744 530 FCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKA 609 (732)
Q Consensus 530 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 609 (732)
+...|++++|.+.|++..+... .+...+..+...|...|++++|+..|++.++.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776532 255677777777777778888877777777652 44566666666333344577788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHH
Q 004744 610 DEFLSKMVSEGVDPDSISYNTLINGFVREEN---MDKAFALVSKMENQG-LVPD------VITYNVILTGFCRQGRMHDS 679 (732)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A 679 (732)
.+.++++++.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ..+|..++..|...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88777777643 2235666666777776676 677777777766521 1122 14666777777778888888
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 004744 680 ELILWRMIEKGLNPD-RSTYTTLINGHV 706 (732)
Q Consensus 680 ~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 706 (732)
...++++++ +.|+ ...+..+.....
T Consensus 241 ~~~~~~al~--~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 241 DAAWKNILA--LDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHC----
T ss_pred HHHHHHHHh--cCccHHHHHHHhhhhhc
Confidence 888888877 5664 455555544433
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=6.3e-13 Score=130.79 Aligned_cols=225 Identities=10% Similarity=-0.002 Sum_probs=165.1
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHH
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVK----IGWVDLAREVYAEVVRSGIELNVYTL 243 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 243 (732)
.++.++..++..|...|++++|+..|++..+.+ +..++..+...+.. .+++++|.+.|+++.+.+ +..++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 456677778888888888888888888888743 56777778888888 888888888888887764 66777
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 004744 244 NIMVNALCK----DHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCR----EGFLEEAFQLMNSMSGKGLKPGVFTYNS 315 (732)
Q Consensus 244 ~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 315 (732)
..+...|.. .+++++|...|++..+.+ +..++..+...|.. .|++++|++.|++..+.+ +..++..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 777777877 888888888888877764 66777777777777 788888888888877764 5566677
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----CCCHhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 004744 316 LINGLCK----KGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCR----KENMSEAEEIFCEMSRRGVAPDIVSFSTLI 387 (732)
Q Consensus 316 li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 387 (732)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777776 777777777777777653 44566666667766 777777777777776654 355666666
Q ss_pred HHHHh----CCCHHHHHHHHHHHHHCC
Q 004744 388 GIFSR----NGQLDRALMYFREMKSAG 410 (732)
Q Consensus 388 ~~~~~----~g~~~~A~~l~~~~~~~~ 410 (732)
..|.. .+++++|.+.|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66666 667777777777666553
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=6.7e-12 Score=137.07 Aligned_cols=216 Identities=6% Similarity=-0.055 Sum_probs=104.3
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 435 LKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEAD-DLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQ 513 (732)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (732)
..+|++.+..-+ .....|...+..+.+.|+.++|. .+|+...... +.+...|...+....+.|+++.|..+|+.++.
T Consensus 329 ~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444444322 24555555555555555555554 5555555432 22444445555555555556666655555543
Q ss_pred CCC---------CC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 004744 514 KSI---------KP------------DIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSM-GHV 571 (732)
Q Consensus 514 ~~~---------~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 571 (732)
... .| ...+|...+....+.|..+.|..+|.++.+.........|...+..-.+. ++.
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 200 01 11234444555555555666666666655431111122222222222222 235
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 572 TEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDP--DSISYNTLINGFVREENMDKAFALVS 649 (732)
Q Consensus 572 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 649 (732)
+.|..+|+..++. .+.+...+...+......|+.+.|+.+|++.+.....+ ....|...+..-.+.|+.+.+.++.+
T Consensus 487 e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 487 KTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666666655554 33444455555555555566666666666655532211 12345555555555666666666666
Q ss_pred HHHH
Q 004744 650 KMEN 653 (732)
Q Consensus 650 ~~~~ 653 (732)
++.+
T Consensus 566 R~~~ 569 (679)
T 4e6h_A 566 RFFE 569 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=9.9e-14 Score=136.46 Aligned_cols=235 Identities=11% Similarity=0.009 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004744 119 MSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRN 198 (732)
Q Consensus 119 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 198 (732)
..+...+..+...|++++|...|.+++.. .+.+..++..++..|.+.|++++|+..|+++.+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 65 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK------------------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT------------------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34455666666777777777777776642 233445666666777777777777777777766
Q ss_pred CCC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004744 199 KGI--CFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTV 276 (732)
Q Consensus 199 ~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 276 (732)
.+. .....+|..+...+.+.|++++|.+.|+++++.. +.+..++..+...|...|++++|...|++..+.... +..
T Consensus 66 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~ 143 (272)
T 3u4t_A 66 KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPK 143 (272)
T ss_dssp TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHH
T ss_pred ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHH
Confidence 321 1123346666666777777777777777766653 445556666666666666666666666666655322 445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HH
Q 004744 277 TYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGR---CDRAKEVLDEMLQMG-LSPD------TA 346 (732)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g-~~~~------~~ 346 (732)
+|..+...+...+++++|.+.|+++.+.... +...+..+...+...|+ +++|...++++.+.. -.|+ ..
T Consensus 144 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 222 (272)
T 3u4t_A 144 VFYELGQAYYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE 222 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 5555552333344666666666666654322 35555556666666665 555666666655421 0122 12
Q ss_pred hHHHHHHHHHcCCCHhHHHHHHHHHHhC
Q 004744 347 TYNTLLVESCRKENMSEAEEIFCEMSRR 374 (732)
Q Consensus 347 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (732)
+|..+...|...|++++|.+.++++.+.
T Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 223 ANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444555555555555555555555543
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=2.6e-13 Score=131.80 Aligned_cols=201 Identities=16% Similarity=0.045 Sum_probs=147.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA 249 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (732)
+.+|..++..|...|++++|+..|+++.+..+. +..++..+...+.+.|++++|.+.|+++++.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 566778888888889999999999888877544 67788888888888888888888888887764 4566777777788
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004744 250 LCKDHKIDSAKMFLCEMEQKGVYP-DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDR 328 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 328 (732)
+...|++++|...++++.+.+..| +...+..++..+.+.|++++|.+.++++.+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888877622233 4556777777777788888888888777665322 56667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhC
Q 004744 329 AKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRR 374 (732)
Q Consensus 329 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (732)
|...++++.+.. +.+...+..+...+...|+.++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777776643 345556666666677777777777777766654
No 51
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=2e-11 Score=133.27 Aligned_cols=475 Identities=11% Similarity=0.057 Sum_probs=297.0
Q ss_pred HcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhH
Q 004744 182 QARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHK---IDS 258 (732)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~ 258 (732)
+.....+-+..|++.+..++. |..+|..++..+.+.+.++.+..+|++++.. +|.....|...+..-.+.++ ++.
T Consensus 44 ~~~~~~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 44 RVRDESDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp --CCCSCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHH
T ss_pred cccCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHH
Confidence 344567777788888888776 9999999999999999999999999999887 57788889999988888888 999
Q ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCH----HH----HHHHHHHHhh-CCC-CCC-HhhHHHHHHHHHh----
Q 004744 259 AKMFLCEMEQKGV-YPDTVTYNTLINAYCREGFL----EE----AFQLMNSMSG-KGL-KPG-VFTYNSLINGLCK---- 322 (732)
Q Consensus 259 A~~~~~~~~~~g~-~p~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~-~~~~~~li~~~~~---- 322 (732)
+..+|++...... .|++..|...+....+.++. ++ ..++|+.... .|. .++ ...|...+.....
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 9999999988741 37888888887766665553 33 3466666543 344 443 4566666654432
Q ss_pred -----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHH
Q 004744 323 -----KGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLD 397 (732)
Q Consensus 323 -----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 397 (732)
.++++.+..+|++++......-..+|..... +.+.-+...+.+++.+. ..+++
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~ 259 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYM 259 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHH
T ss_pred CcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHH
Confidence 3345666677777664211111112221111 00000000111111110 11233
Q ss_pred HHHHHHHHHHHC--CCC---CCH-HHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC------
Q 004744 398 RALMYFREMKSA--GLV---PDN-VLYTIIINGYCRNG-FVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAK------ 464 (732)
Q Consensus 398 ~A~~l~~~~~~~--~~~---~~~-~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~------ 464 (732)
.|...+.++... ++. |.. .+.. ....-..+ .....+ ..|...+..--..+
T Consensus 260 ~Ar~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql---------------~lW~~yi~fEk~~~~~l~~~ 322 (679)
T 4e6h_A 260 NARSLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQL---------------LIWLEWIRWESDNKLELSDD 322 (679)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHH---------------HHHHHHHHHHHTCTTCCCHH
T ss_pred HHHHHHHHHHHHHHhHhhccccccccch--hccCCCCchhHHHHH---------------HHHHHHHHHHHhCCccccch
Confidence 333333332211 110 000 0000 00000000 001111 22333332211111
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004744 465 -MLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKAL-NLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKL 542 (732)
Q Consensus 465 -~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 542 (732)
..+.+..+|++++...+. +...|...+..+...|+.++|. .+|+..... .+.+...|-..+....+.|+++.|.++
T Consensus 323 ~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~i 400 (679)
T 4e6h_A 323 LHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 133456778888776443 7888888888888899999997 999999875 445677777888888999999999999
Q ss_pred HHHHHHCCC---------CC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004744 543 WADMISRKI---------SP------------NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYC 601 (732)
Q Consensus 543 ~~~~~~~~~---------~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 601 (732)
|+++++... .| ....|...+....+.|..+.|..+|..+++.-.......|...+..-.
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 999886410 12 123677778887888999999999999987611223444544444434
Q ss_pred Hc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 004744 602 RS-GDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP--DVITYNVILTGFCRQGRMHD 678 (732)
Q Consensus 602 ~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~ 678 (732)
+. ++.+.|.++|+..++. .+.+...|...++.....|+.+.|..+|++++.....+ ....|...+.--.+.|+.+.
T Consensus 481 ~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 481 HISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44 4589999999999885 33456667788888888999999999999999853222 23577777777778899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH
Q 004744 679 SELILWRMIEKGLNPDRSTYTTLI 702 (732)
Q Consensus 679 A~~~~~~~~~~g~~p~~~~~~~l~ 702 (732)
+..+.+++.+ ..|+......++
T Consensus 560 ~~~v~~R~~~--~~P~~~~~~~f~ 581 (679)
T 4e6h_A 560 VRTLEKRFFE--KFPEVNKLEEFT 581 (679)
T ss_dssp HHHHHHHHHH--HSTTCCHHHHHH
T ss_pred HHHHHHHHHH--hCCCCcHHHHHH
Confidence 9999999998 555543333343
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=5.9e-14 Score=135.39 Aligned_cols=201 Identities=13% Similarity=0.080 Sum_probs=135.7
Q ss_pred ChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004744 117 SSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLL 196 (732)
Q Consensus 117 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 196 (732)
++.+|..++..+...|++++|...|.+++. ..+.+..++..++..|.+.|++++|+..|+++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 83 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE------------------ENKEDAIPYINFANLLSSVNELERALAFYDKA 83 (243)
T ss_dssp --------------------CCTTHHHHHT------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456677777788888888888888888763 24455777888888888888888888888888
Q ss_pred HHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004744 197 RNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTV 276 (732)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 276 (732)
.+..+. +..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|...++++.+.... +..
T Consensus 84 ~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 160 (243)
T 2q7f_A 84 LELDSS-AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTE 160 (243)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHcCCc-chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHH
Confidence 776554 67778888888888888888888888887764 556677777777888888888888888887766432 566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004744 277 TYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQM 339 (732)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 339 (732)
.+..++..+.+.|++++|.+.++++..... .+..++..+...|.+.|++++|...++++.+.
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777777778888888888877766532 25667777777777777777777777777765
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=4.4e-13 Score=127.41 Aligned_cols=205 Identities=10% Similarity=-0.032 Sum_probs=155.7
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004744 167 GSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIM 246 (732)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 246 (732)
+.++.+|..++..|...|++++|+..|+++.+..+. +...+..+...+...|++++|.+.|+++++.. +.+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 445778888889999999999999999998887654 67788888888889999999999999888764 5567788888
Q ss_pred HHHHHhc-CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 004744 247 VNALCKD-HKIDSAKMFLCEMEQKGVYPD-TVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKG 324 (732)
Q Consensus 247 ~~~~~~~-g~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 324 (732)
+..+... |++++|...++++.+.+..|+ ...+..+...+.+.|++++|.+.++++.+.... +...+..+...+.+.|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcC
Confidence 8888888 888888888888887322333 566777888888888888888888887765332 5677777777788888
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhC
Q 004744 325 RCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRR 374 (732)
Q Consensus 325 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (732)
++++|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888877776531145556666666667777777777777776643
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=5.3e-14 Score=138.63 Aligned_cols=245 Identities=9% Similarity=-0.056 Sum_probs=167.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004744 462 RAKMLTEADDLFNEMLERGVF---PDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEK 538 (732)
Q Consensus 462 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 538 (732)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...|+++.+... .+...+..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777665321 1345666777777777777777777777776533 256777777777888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 539 ANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 618 (732)
Q Consensus 539 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (732)
|...|+++.+.. +.+...+..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888777753 235677777888888888888888888888775 33333333444455666888888888877766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004744 619 EGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD-----VITYNVILTGFCRQGRMHDSELILWRMIEKGLNP 693 (732)
Q Consensus 619 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 693 (732)
.. +++...+ .++..+...++.++|...++++.+. .|+ ..+|..++..|.+.|++++|...|+++++ ..|
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p 246 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNV 246 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCC
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCc
Confidence 42 2333333 3666677778888888888887763 232 46778888888899999999999999988 666
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004744 694 DRSTYTTLINGHVSQNNLKEAFRFH 718 (732)
Q Consensus 694 ~~~~~~~l~~~~~~~g~~~~A~~~~ 718 (732)
+. +.....++...|++++|.+.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 43 223355677888888887765
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=7.2e-14 Score=134.78 Aligned_cols=213 Identities=10% Similarity=0.008 Sum_probs=158.3
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMV 247 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 247 (732)
..+..|..++..+.+.|++++|+..|+++.+..+. +...+..+...+.+.|++++|.+.|+++++.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 45677888899999999999999999999987655 78899999999999999999999999998875 56788888899
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChh
Q 004744 248 NALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCD 327 (732)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 327 (732)
..+...|++++|...++++.+.... +...+..++..+.+.|++++|.+.++++.+... .+...+..+...+.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998887533 677888889999999999999999999887643 36778888888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHH
Q 004744 328 RAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTL 386 (732)
Q Consensus 328 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 386 (732)
+|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+..+
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~ 233 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHH
Confidence 9999998888764 445677888888888888888888888888775432 44444433
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=4e-14 Score=139.50 Aligned_cols=248 Identities=10% Similarity=-0.083 Sum_probs=182.8
Q ss_pred HHcCChHHHHHHHHHHHHCCC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 004744 181 VQARKLREGSEVFRLLRNKGI---CFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKID 257 (732)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (732)
...|++++|+..|+++.+... ..+..++..+...+...|++++|.+.|+++++.. +.+..++..++..+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 345789999999999988643 1246788889999999999999999999998875 667888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004744 258 SAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEML 337 (732)
Q Consensus 258 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 337 (732)
+|...|+++.+.... +..++..+...|.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...+.+..
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999887433 67788899999999999999999999998753 444444445555677789999999998877
Q ss_pred HCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCC---CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 004744 338 QMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAP---DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD 414 (732)
Q Consensus 338 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~ 414 (732)
... +++...+ .++..+...++.++|.+.+.+..+..... +...+..+...+...|++++|...|+++.+.. |+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 653 3343344 36677777888888888888876543210 14667777788888888888888888877653 32
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Q 004744 415 NVLYTIIINGYCRNGFVLEALKMR 438 (732)
Q Consensus 415 ~~~~~~li~~~~~~g~~~~A~~~~ 438 (732)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 1 222244556666777666554
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=3.2e-13 Score=131.07 Aligned_cols=202 Identities=9% Similarity=-0.065 Sum_probs=177.1
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004744 118 SMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLR 197 (732)
Q Consensus 118 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 197 (732)
+.+|..++..+...|++++|...|.+++.. .+.+..++..++..|.+.|++++|++.|+++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 98 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI------------------DPSSADAHAALAVVFQTEMEPKLADEEYRKAL 98 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc------------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466778888999999999999999999853 34457889999999999999999999999999
Q ss_pred HCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004744 198 NKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGI-ELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTV 276 (732)
Q Consensus 198 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 276 (732)
+..+. +...+..+...+...|++++|.++|+++.+.+. +.+...+..++..+.+.|++++|...++++.+.... +..
T Consensus 99 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~ 176 (252)
T 2ho1_A 99 ASDSR-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPS 176 (252)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHH
T ss_pred HHCcC-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHH
Confidence 88655 788999999999999999999999999987322 446678888999999999999999999999887533 678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004744 277 TYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMG 340 (732)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 340 (732)
++..++..|.+.|++++|.+.++.+.+... .+...+..+...+...|+.++|.+.++++.+..
T Consensus 177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 177 VALEMADLLYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 899999999999999999999999988643 477888999999999999999999999998863
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=4.4e-13 Score=127.42 Aligned_cols=211 Identities=12% Similarity=-0.033 Sum_probs=180.6
Q ss_pred CChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHH
Q 004744 116 HSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRL 195 (732)
Q Consensus 116 ~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 195 (732)
.++.+|..++..+...|++++|...+.+++.. .+.+..++..++..|...|++++|++.|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 67 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKS------------------DPKNELAWLVRAEIYQYLKVNDKAQESFRQ 67 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh------------------CccchHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 35778899999999999999999999999853 344577899999999999999999999999
Q ss_pred HHHCCCccCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004744 196 LRNKGICFSINACNSLLGGLVKI-GWVDLAREVYAEVVRSGI-ELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYP 273 (732)
Q Consensus 196 ~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 273 (732)
+.+..+. +..++..+...+... |++++|.+.|+++++.+. +.+..++..+...+.+.|++++|...++++.+....
T Consensus 68 a~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 145 (225)
T 2vq2_A 68 ALSIKPD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ- 145 (225)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-
T ss_pred HHHhCCC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 9987655 788999999999999 999999999999988322 334678889999999999999999999999887433
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 004744 274 DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATY 348 (732)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 348 (732)
+...+..++..+.+.|++++|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+. .|+....
T Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~ 218 (225)
T 2vq2_A 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEEL 218 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHH
Confidence 578899999999999999999999999988644247778888888899999999999999998764 3544433
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=6.9e-14 Score=146.91 Aligned_cols=202 Identities=14% Similarity=0.085 Sum_probs=124.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 004744 522 TYNTLIDGFCKVGEMEKANKLWADMISR----K-ISPNYISYGILINGYCSMGH-----------------VTEAFRLWY 579 (732)
Q Consensus 522 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 579 (732)
.+..+...|...|++++|...+++..+. + .+....++..+...|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 3444444455555555555555444332 0 01122345555566666666 666666666
Q ss_pred HHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 580 EMVGK----GI-KPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGV-DPD----SISYNTLINGFVREENMDKAFALVS 649 (732)
Q Consensus 580 ~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 649 (732)
+..+. +. +....++..+...|...|++++|.+.+++..+... .++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 55432 11 11234666677777788888888888877765310 011 2366777788888888888888888
Q ss_pred HHHHCC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 650 KMENQG----LV-PDVITYNVILTGFCRQGRMHDSELILWRMIEK----GLNP-DRSTYTTLINGHVSQNNLKEAFRFHD 719 (732)
Q Consensus 650 ~~~~~g----~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 719 (732)
++.+.. .. ....++..++..+...|++++|..+++++++. +..+ ...++..++.+|...|++++|.++++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 776521 00 01356777888888888888888888888751 1111 13477788888888888888888888
Q ss_pred HHHH
Q 004744 720 EMLQ 723 (732)
Q Consensus 720 ~m~~ 723 (732)
+.++
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=4.9e-13 Score=140.01 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-C
Q 004744 414 DNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMD----VVTYNTILNGLCRAKMLTEADDLFNEMLER----GVFP-D 484 (732)
Q Consensus 414 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~-~ 484 (732)
....+......+...|++++|+..+++..+.... + ...+..+...+...|++++|...++++.+. +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444555566666666666666666666665332 2 234555666666666666666666655432 1111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 485 FYTFTTLIHGHCKDGNMNKALNLFDIMTQ 513 (732)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (732)
..++..+...+...|++++|...++++.+
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 115 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLD 115 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23445555555556666666666655554
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=4.3e-13 Score=136.19 Aligned_cols=267 Identities=13% Similarity=0.033 Sum_probs=162.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHH
Q 004744 457 LNGLCRAKMLTEADDLFNEMLERGVFPD----FYTFTTLIHGHCKDGNMNKALNLFDIMTQK----SI-KPDIVTYNTLI 527 (732)
Q Consensus 457 i~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li 527 (732)
...+...|++++|...|+++.+.... + ...+..+...+...|++++|...++++... +. +.....+..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 33344445555555555444443221 1 133444444455555555555554443321 00 01133444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 004744 528 DGFCKVGEMEKANKLWADMISRKI-SPN----YISYGILINGYCSMGH--------------------VTEAFRLWYEMV 582 (732)
Q Consensus 528 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~ 582 (732)
..+...|++++|...+++..+... .++ ..++..+...|...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 555566666666666655543210 001 2255566666666666 677777666654
Q ss_pred hC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 583 GK----GI-KPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGV-DPD----SISYNTLINGFVREENMDKAFALVSKME 652 (732)
Q Consensus 583 ~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 652 (732)
.. +. +....++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 11 11234677777888888999998888888765310 111 3367788888999999999999999887
Q ss_pred HC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 653 NQ----GLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEK----GLNP-DRSTYTTLINGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 653 ~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 722 (732)
+. +..+ ...++..++..+...|++++|...++++.+. +..+ ...++..++.+|...|++++|.+.+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 52 1111 1457788889999999999999999998762 1111 14578889999999999999999999998
Q ss_pred HC
Q 004744 723 QR 724 (732)
Q Consensus 723 ~~ 724 (732)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 63
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=1.8e-12 Score=118.93 Aligned_cols=172 Identities=13% Similarity=0.026 Sum_probs=146.6
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMV 247 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 247 (732)
.++.+|..|+..|.+.|++++|++.|+++++..+. +..++..+..++.+.|++++|...+..+.... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 45778999999999999999999999999988776 88899999999999999999999999988765 66777888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChh
Q 004744 248 NALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCD 327 (732)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 327 (732)
..+...++++.|...+.+..+.... +..++..+...|.+.|++++|++.|++..+.... +..+|..+...|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 8899999999999999998877543 6778888899999999999999999998876443 6788888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCH
Q 004744 328 RAKEVLDEMLQMGLSPDT 345 (732)
Q Consensus 328 ~A~~~~~~~~~~g~~~~~ 345 (732)
+|...|++.++. .|+.
T Consensus 159 ~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHHhC--CccC
Confidence 999999998875 4543
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=3.2e-13 Score=141.38 Aligned_cols=238 Identities=16% Similarity=0.052 Sum_probs=151.0
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CC
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFS----INACNSLLGGLVKIGWVDLAREVYAEVVRS----GI-EL 238 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~ 238 (732)
.....+..++..+...|++++|+..|+++.+.++. + ..++..+...+...|++++|...|++++.. +. +.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 45667778889999999999999999999887554 3 357888889999999999999999987653 11 12
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCC--------------------HHH
Q 004744 239 NVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVY-PD----TVTYNTLINAYCREGF--------------------LEE 293 (732)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~li~~~~~~g~--------------------~~~ 293 (732)
...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2456777888888889999988888877654110 11 3467777788888888 777
Q ss_pred HHHHHHHHhhC----CCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHcCCCHhH
Q 004744 294 AFQLMNSMSGK----GLK-PGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGL-SPD----TATYNTLLVESCRKENMSE 363 (732)
Q Consensus 294 A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~~ 363 (732)
|.+.+++.... +.. ....++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 77777765432 111 1133566666667777777777777766653210 011 1245555555666666666
Q ss_pred HHHHHHHHHhCCCC-CC----HhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004744 364 AEEIFCEMSRRGVA-PD----IVSFSTLIGIFSRNGQLDRALMYFREM 406 (732)
Q Consensus 364 A~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~g~~~~A~~l~~~~ 406 (732)
|.+.+++..+.... ++ ..++..+...+...|++++|...+++.
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 66665554421000 00 234444555555555555555555444
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=5.2e-13 Score=140.21 Aligned_cols=236 Identities=16% Similarity=0.072 Sum_probs=149.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHc----C-CCCCH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSI----NACNSLLGGLVKIGWVDLAREVYAEVVRS----G-IELNV 240 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~ 240 (732)
...+..++..+...|++++|+..|+++.+.++. +. .++..+...+...|++++|.+.|+++++. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344556788899999999999999999987654 43 57888899999999999999999988763 1 13344
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHH
Q 004744 241 YTLNIMVNALCKDHKIDSAKMFLCEMEQKG-----VYPDTVTYNTLINAYCREGF-----------------LEEAFQLM 298 (732)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 298 (732)
.++..+...|...|++++|...++++.+.. ......++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 577788888888999999988888876541 11124467777888888888 77777777
Q ss_pred HHHhhC----CC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHcCCCHhHHHHHH
Q 004744 299 NSMSGK----GL-KPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLS-PD----TATYNTLLVESCRKENMSEAEEIF 368 (732)
Q Consensus 299 ~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~ 368 (732)
++..+. +. .....++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 765432 10 112235666666666777777777776666542100 01 114455555555666666666555
Q ss_pred HHHHhCCCC-----CCHhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004744 369 CEMSRRGVA-----PDIVSFSTLIGIFSRNGQLDRALMYFREM 406 (732)
Q Consensus 369 ~~~~~~g~~-----~~~~~~~~l~~~~~~~g~~~~A~~l~~~~ 406 (732)
++..+.... ....++..+...+...|++++|...+++.
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 554332100 01233444445555555555555555444
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=5.1e-12 Score=126.62 Aligned_cols=219 Identities=8% Similarity=-0.061 Sum_probs=171.5
Q ss_pred hHHHHHHHhHHhhCCCCCCChHHHHHHHHHHH-------hCCCh-------HHHHHHHHHHHHhcCCChhHHHHhhhhhc
Q 004744 98 QVGQRFIDFIALNFPNVKHSSMSLSAMIHFLV-------RGRRI-------SDAQALILRMVRKSGVSRLEIVDSFVSTY 163 (732)
Q Consensus 98 ~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (732)
+.|...|+.+....|+ ++..|..++..+. +.|++ ++|...|++++..
T Consensus 33 ~~a~~~~~~al~~~p~---~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~---------------- 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST---------------- 93 (308)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT----------------
T ss_pred HHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH----------------
Confidence 3467788887776654 7889999888876 35886 8999999998731
Q ss_pred CCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 004744 164 SPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSIN-ACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYT 242 (732)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 242 (732)
..+.+..+|..++..+.+.|++++|..+|+++++..+. +.. .|..++..+.+.|++++|..+|+++++.. +.+...
T Consensus 94 -~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~ 170 (308)
T 2ond_A 94 -LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHV 170 (308)
T ss_dssp -TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHH
T ss_pred -hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHH
Confidence 24566788999999999999999999999999987554 343 89999999999999999999999998764 445555
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-CCC--CHhhHHHHHH
Q 004744 243 LNIMVNALC-KDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKG-LKP--GVFTYNSLIN 318 (732)
Q Consensus 243 ~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~ 318 (732)
|...+.... ..|++++|..+|++..+..+. +...|..++..+.+.|++++|..+|++..... +.| ....|..++.
T Consensus 171 ~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~ 249 (308)
T 2ond_A 171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 249 (308)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 554443322 368999999999988876432 67788888888888899999999999988863 344 4567888888
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 004744 319 GLCKKGRCDRAKEVLDEMLQM 339 (732)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~ 339 (732)
.+.+.|+.++|..+++++.+.
T Consensus 250 ~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 250 FESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888889999999888888775
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=1.5e-11 Score=123.06 Aligned_cols=217 Identities=9% Similarity=-0.027 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004744 187 REGSEVFRLLRNKGICFSINACNSLLGGLVK-------IGWV-------DLAREVYAEVVRSGIELNVYTLNIMVNALCK 252 (732)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (732)
++|+.+|+++++..+. +...|..++..+.+ .|++ ++|..+|+++++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6777888888776554 67777777776653 4664 6777777777662124455566666666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH-hcCChhHH
Q 004744 253 DHKIDSAKMFLCEMEQKGVYPD-TV-TYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLC-KKGRCDRA 329 (732)
Q Consensus 253 ~g~~~~A~~~~~~~~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A 329 (732)
.|++++|..+|+++.+. .|+ .. +|..++..+.+.|++++|.++|++..+.+. ++...|...+.... ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777776664 232 22 566666666666666666666666665432 23333332222211 24666666
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCC-CCC--CHhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004744 330 KEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRG-VAP--DIVSFSTLIGIFSRNGQLDRALMYFREM 406 (732)
Q Consensus 330 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~--~~~~~~~l~~~~~~~g~~~~A~~l~~~~ 406 (732)
..+|++.++.. +.+...|..++..+.+.|+.++|..+|++..... +.| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666655432 2244455555555555566666666665555532 222 2445555555555555555555555555
Q ss_pred HH
Q 004744 407 KS 408 (732)
Q Consensus 407 ~~ 408 (732)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=7.2e-12 Score=114.88 Aligned_cols=164 Identities=14% Similarity=0.101 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004744 520 IVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKG 599 (732)
Q Consensus 520 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 599 (732)
..+|..+...|.+.|++++|++.|++.++..+ .+...+..+...|.+.|++++|+..+....... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 34444555555555555555555555544422 244444455555555555555555555444432 3334444444444
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 004744 600 YCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHD 678 (732)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 678 (732)
+...++++.|.+.+.+..... +.+...+..+...+.+.|++++|++.++++.+. .| +..+|..++.+|.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHHH
Confidence 445555555555554444421 123344444444455555555555555554442 22 33344444445555555555
Q ss_pred HHHHHHHHHH
Q 004744 679 SELILWRMIE 688 (732)
Q Consensus 679 A~~~~~~~~~ 688 (732)
|...|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=1.1e-12 Score=133.06 Aligned_cols=200 Identities=17% Similarity=0.043 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CCCHH
Q 004744 171 LIFDLVIRTYVQARKLREGSEVFRLLRNKGICFS----INACNSLLGGLVKIGWVDLAREVYAEVVRS----GI-ELNVY 241 (732)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 241 (732)
..+...+..+...|++++|+..|+++.+..+. + ...+..+...+...|++++|.+.++++++. +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34556678889999999999999999887544 3 467788889999999999999999887653 11 22245
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCC--------------------HHHHHH
Q 004744 242 TLNIMVNALCKDHKIDSAKMFLCEMEQKGVY-PD----TVTYNTLINAYCREGF--------------------LEEAFQ 296 (732)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~li~~~~~~g~--------------------~~~A~~ 296 (732)
++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 6777788888888888888888876553110 12 3366777777777888 777777
Q ss_pred HHHHHhhC----CC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHcCCCHhHHHH
Q 004744 297 LMNSMSGK----GL-KPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGL-SPD----TATYNTLLVESCRKENMSEAEE 366 (732)
Q Consensus 297 ~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~ 366 (732)
.+++.... +. .....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|.+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77665431 10 11123455566666666666666666666543200 001 1144444455555555555555
Q ss_pred HHHHH
Q 004744 367 IFCEM 371 (732)
Q Consensus 367 ~~~~~ 371 (732)
.+++.
T Consensus 245 ~~~~a 249 (338)
T 3ro2_A 245 YYKKT 249 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.47 E-value=4.6e-12 Score=131.45 Aligned_cols=230 Identities=8% Similarity=-0.023 Sum_probs=167.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCCHHHHH
Q 004744 491 LIHGHCKDGNMNKALNLFDIMTQK----SIKP-DIVTYNTLIDGFCKVGEMEKANKLWADMISRKI------SPNYISYG 559 (732)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~ 559 (732)
....+...|++++|+..+++..+. +-.+ ...++..+...|...|++++|...+.+..+... .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455567778888888888877653 1111 235667777788888888888888887765311 11234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 004744 560 ILINGYCSMGHVTEAFRLWYEMVGKGI-KPT----LVSCNTIIKGYCRSGDASKADEFLSKMVSE----GV-DPDSISYN 629 (732)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 629 (732)
.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|++.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888999999999999888775310 011 247788888999999999999999998772 22 33466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 004744 630 TLINGFVREENMDKAFALVSKMENQG---LVPD-VITYNVILTGFCRQGR---MHDSELILWRMIEKGLNPD-RSTYTTL 701 (732)
Q Consensus 630 ~li~~~~~~g~~~~A~~~~~~~~~~g---~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l 701 (732)
.+...|.+.|++++|...+++..+.. -.|. ...+..+...+...|+ +++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 89999999999999999999887621 0121 2335667788888888 77777777766 24443 4678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004744 702 INGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 702 ~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
+..|...|++++|..++++.++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=1.9e-12 Score=137.86 Aligned_cols=209 Identities=11% Similarity=-0.004 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 501 MNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEM-EKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWY 579 (732)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 579 (732)
+++++..++...... +.+...+..+...+...|++ ++|++.|++.++... .+...|..+...|...|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555444332 23555566666666666666 666666666665532 245566666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 004744 580 EMVGKGIKPTLVSCNTIIKGYCRS---------GDASKADEFLSKMVSEGVDPDSISYNTLINGFVRE--------ENMD 642 (732)
Q Consensus 580 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 642 (732)
+.++. .|+...+..+...|... |++++|++.++++++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66655 34456666666666666 67777777777766643 22456666666666666 6777
Q ss_pred HHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004744 643 KAFALVSKMENQGLVP----DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRF 717 (732)
Q Consensus 643 ~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 717 (732)
+|+..|+++.+ +.| +...|..++.+|...|++++|...|+++.+ +.|+ ...+..+..++...|++++|.+.
T Consensus 239 ~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776 344 556677777777777777777777777776 5553 45677777777777777777654
Q ss_pred H
Q 004744 718 H 718 (732)
Q Consensus 718 ~ 718 (732)
+
T Consensus 315 ~ 315 (474)
T 4abn_A 315 K 315 (474)
T ss_dssp T
T ss_pred h
Confidence 3
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=2.7e-12 Score=136.63 Aligned_cols=213 Identities=10% Similarity=-0.045 Sum_probs=150.1
Q ss_pred ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 004744 185 KLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWV-DLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFL 263 (732)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (732)
.+++|+..++......+ .+...+..+...+...|++ ++|.+.|+++++.. +.+..+|..+...|.+.|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35667777777665543 3677778888888888888 88888888887764 556777777888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc--------CCh
Q 004744 264 CEMEQKGVYPDTVTYNTLINAYCRE---------GFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKK--------GRC 326 (732)
Q Consensus 264 ~~~~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~ 326 (732)
++..+. .|+..++..+...|... |++++|++.|++..+.... +...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 887776 35567777777777777 7788888888777765433 566777777777777 777
Q ss_pred hHHHHHHHHHHHCCCC---CCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHH
Q 004744 327 DRAKEVLDEMLQMGLS---PDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYF 403 (732)
Q Consensus 327 ~~A~~~~~~~~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~ 403 (732)
++|...|++.++.. + .+...|..+...|...|++++|.+.|++..+.... +...+..+...+...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777642 2 35566777777777777777777777776665322 4556666666666666666666554
Q ss_pred H
Q 004744 404 R 404 (732)
Q Consensus 404 ~ 404 (732)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=1.3e-11 Score=127.99 Aligned_cols=230 Identities=10% Similarity=-0.026 Sum_probs=168.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 004744 456 ILNGLCRAKMLTEADDLFNEMLER----GVFP-DFYTFTTLIHGHCKDGNMNKALNLFDIMTQKS--I----KPDIVTYN 524 (732)
Q Consensus 456 li~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~~~~~ 524 (732)
....+...|++++|...|++..+. +-.+ ...++..+...|...|++++|+..+.+..+.. . .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667788888888888887653 1111 23567778888888888888888888776531 1 11234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 004744 525 TLIDGFCKVGEMEKANKLWADMISRKIS-PN----YISYGILINGYCSMGHVTEAFRLWYEMVGK----GI-KPTLVSCN 594 (732)
Q Consensus 525 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 594 (732)
.+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888888999999999998887753111 11 236778889999999999999999988872 22 34467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 004744 595 TIIKGYCRSGDASKADEFLSKMVSE----GVDPDSISYNTLINGFVREEN---MDKAFALVSKMENQGLVPD-VITYNVI 666 (732)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l 666 (732)
.+...|.+.|++++|.+.+++..+. +-+.....+..+...+...|+ +++|+.++++.. ..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 8999999999999999999988763 111122335678888888998 788888877762 3333 3467788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004744 667 LTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 667 ~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
+..|...|++++|..+++++.+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999886
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=2.4e-12 Score=129.21 Aligned_cols=200 Identities=13% Similarity=0.041 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-C
Q 004744 522 TYNTLIDGFCKVGEMEKANKLWADMISR------K-ISPNYISYGILINGYCSMGHVTEAFRLWYEMVGK------GI-K 587 (732)
Q Consensus 522 ~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~ 587 (732)
.+..+...|...|++++|...++++.+. + .+.....+..+...|...|++++|...++++.+. +. +
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444444444455555555544444432 1 1112334555555566666666666666655542 11 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------
Q 004744 588 PTLVSCNTIIKGYCRSGDASKADEFLSKMVSE------GVDP-DSISYNTLINGFVREENMDKAFALVSKMENQ------ 654 (732)
Q Consensus 588 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------ 654 (732)
.....+..+...+...|++++|+++++++.+. +..| ...++..+...|...|++++|.+.++++.+.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 22345566666667777777777777666553 1122 2345666777777777777777777776651
Q ss_pred -CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 655 -GLVPDV-------ITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 655 -g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
...+.. ..+..+...+...+.+.+|...+++... ..| +..+|..++.+|.+.|++++|.+++++.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111111 1222233334455666677777777765 445 357888899999999999999999998874
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=1.4e-12 Score=130.88 Aligned_cols=240 Identities=13% Similarity=0.035 Sum_probs=158.5
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----
Q 004744 167 GSNSLIFDLVIRTYVQARKLREGSEVFRLLRNK-------GICFSINACNSLLGGLVKIGWVDLAREVYAEVVRS----- 234 (732)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----- 234 (732)
+.+..++..++..|...|++++|+..|+++.+. .......++..+...+...|++++|.+.|+++++.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345788999999999999999999999999873 23335678889999999999999999999998864
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-
Q 004744 235 -G-IELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQK------GVYP-DTVTYNTLINAYCREGFLEEAFQLMNSMSGK- 304 (732)
Q Consensus 235 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 304 (732)
+ .+....++..+...|...|++++|...++++.+. +..| ...++..+...|...|++++|.+.++++...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 2334567888889999999999999999988764 2122 3456788888999999999999999888664
Q ss_pred -----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-------CCCCHH-------hHHHHHHHHHcCCCHhHH
Q 004744 305 -----GLKP-GVFTYNSLINGLCKKGRCDRAKEVLDEMLQMG-------LSPDTA-------TYNTLLVESCRKENMSEA 364 (732)
Q Consensus 305 -----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-------~~~~~~-------~~~~li~~~~~~g~~~~A 364 (732)
+..| ...++..+...|...|++++|...++++.+.. ..+... .+..+...+...+.+.+|
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 1122 34567888888889999999999998887531 111111 111112222333344444
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004744 365 EEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMK 407 (732)
Q Consensus 365 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~ 407 (732)
...+....... +.+..++..+...|.+.|++++|.+.|++..
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444443321 1133445555555666666666666555544
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=1e-11 Score=137.46 Aligned_cols=170 Identities=14% Similarity=0.035 Sum_probs=153.9
Q ss_pred CCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004744 165 PCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLN 244 (732)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 244 (732)
.+|.++.+++.|+..|.+.|++++|+..|+++++..+. +..+|+.+..+|.+.|++++|++.|+++++.. +.+..+|.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~ 81 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYS 81 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 46778899999999999999999999999999998776 78999999999999999999999999999875 66788999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 004744 245 IMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKG 324 (732)
Q Consensus 245 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 324 (732)
.+..+|.+.|++++|++.|++..+.... +..+|+.+...|.+.|++++|++.|++..+.... +...|..+...|...|
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcc
Confidence 9999999999999999999999987543 6789999999999999999999999999987543 6889999999999999
Q ss_pred ChhHHHHHHHHHHH
Q 004744 325 RCDRAKEVLDEMLQ 338 (732)
Q Consensus 325 ~~~~A~~~~~~~~~ 338 (732)
++++|.+.++++++
T Consensus 160 ~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 160 DWTDYDERMKKLVS 173 (723)
T ss_dssp CCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999988765
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.38 E-value=7.1e-11 Score=122.17 Aligned_cols=229 Identities=12% Similarity=0.036 Sum_probs=155.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----C-CCHHHHH
Q 004744 491 LIHGHCKDGNMNKALNLFDIMTQKSI-KP----DIVTYNTLIDGFCKVGEMEKANKLWADMISRKI-----S-PNYISYG 559 (732)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~-~~~~~~~ 559 (732)
....+...|++++|+..++++.+... .+ ...++..+...|...|++++|...+.+..+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445667777777777777765311 01 234566677777788888888887777664311 1 1234667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 004744 560 ILINGYCSMGHVTEAFRLWYEMVGK----GIK-PTLVSCNTIIKGYCRSGDASKADEFLSKMVS-----EGVDPDSISYN 629 (732)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 629 (732)
.+...|...|++++|.+.|++..+. +.+ ....++..+...|...|++++|++.+++.++ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7778888888888888888877653 111 1134677788888888888888888888876 32 22366777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 004744 630 TLINGFVREENMDKAFALVSKMENQGL---VPD-VITYNVILTGFCRQGR---MHDSELILWRMIEKGLNPD-RSTYTTL 701 (732)
Q Consensus 630 ~li~~~~~~g~~~~A~~~~~~~~~~g~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l 701 (732)
.+...+.+.|++++|...+++..+... .|. ...+..+...+...|+ +.+|..++++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 888888889999999999888877211 222 2345566666667777 77777777662 23333 3567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004744 702 INGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 702 ~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
+..|...|++++|.+.++++++
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999998888764
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=2.6e-10 Score=117.74 Aligned_cols=297 Identities=11% Similarity=0.059 Sum_probs=166.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHH
Q 004744 419 TIIINGYCRNGFVLEALKMRDEMLEKGCVMDVV----TYNTILNGLCRAKMLTEADDLFNEMLERGV-FPDF----YTFT 489 (732)
Q Consensus 419 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~ 489 (732)
......+...|++++|...+++........+.. .++.+...+...|++++|...+++..+... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334455667788888888888777654333322 455666677777888888888777665311 1121 2245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHH
Q 004744 490 TLIHGHCKDGNMNKALNLFDIMTQK----SIK--P-DIVTYNTLIDGFCKVGEMEKANKLWADMISRKIS----PNYISY 558 (732)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~ 558 (732)
.+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++..+.... .....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 5666677777777777777766542 111 1 2234455666677777777777777776654221 112355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHH
Q 004744 559 GILINGYCSMGHVTEAFRLWYEMVGKGIKP-TLVSCN-----TIIKGYCRSGDASKADEFLSKMVSEGVDPD---SISYN 629 (732)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~ 629 (732)
..+...+...|++++|...+++.......+ +...+. ..+..+...|+.++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 566666777777777777777665431111 111111 122335567777777777776654321111 22345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-C---CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 630 TLINGFVREENMDKAFALVSKMENQGLV-P---DV-ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLING 704 (732)
Q Consensus 630 ~li~~~~~~g~~~~A~~~~~~~~~~g~~-p---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 704 (732)
.+...+...|++++|...++++...... + +. ..+..+..++...|+.++|...++++.+ +.+.. .....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~--~~~~~----g~~~~ 331 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK--LANRT----GFISH 331 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHH----CCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--Hhccc----cHHHH
Confidence 5666667777777777777776652111 1 11 2444555666667777777777777665 32221 12233
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004744 705 HVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 705 ~~~~g~~~~A~~~~~~m~~ 723 (732)
+...| +....+++++..
T Consensus 332 ~~~~g--~~~~~ll~~~~~ 348 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQ 348 (373)
T ss_dssp HHTTH--HHHHHHHHHHHH
T ss_pred HHHcc--HHHHHHHHHHHh
Confidence 34444 455555555543
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=1.2e-10 Score=120.49 Aligned_cols=230 Identities=10% Similarity=-0.014 Sum_probs=169.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---C-CCHHHH
Q 004744 455 TILNGLCRAKMLTEADDLFNEMLERGV-FPD----FYTFTTLIHGHCKDGNMNKALNLFDIMTQKS--I---K-PDIVTY 523 (732)
Q Consensus 455 ~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~---~-~~~~~~ 523 (732)
.....+...|++++|+..|+++.+... .++ ..++..+...|...|+++.|...+++..+.. . . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556778888888888888775411 122 3467778888888999999988888776521 1 1 124567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 004744 524 NTLIDGFCKVGEMEKANKLWADMISR----KIS-PNYISYGILINGYCSMGHVTEAFRLWYEMVG-----KGIKPTLVSC 593 (732)
Q Consensus 524 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 593 (732)
..+...|...|++++|.+.|++..+. +.. ....++..+...|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 77888889999999999999887753 111 1234677888899999999999999999887 42 3346788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHH
Q 004744 594 NTIIKGYCRSGDASKADEFLSKMVSEGV---DPD-SISYNTLINGFVREEN---MDKAFALVSKMENQGLVPD-VITYNV 665 (732)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~ 665 (732)
..+...|.+.|++++|.+.+++..+... .+. ...+..+...+...|+ +++|+..+++.. ..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHH
Confidence 8899999999999999999999887421 122 3456667777778888 788888777632 2333 346678
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004744 666 ILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 666 l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
++..|...|++++|...|+++.+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999999999876
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=6.6e-10 Score=114.64 Aligned_cols=299 Identities=9% Similarity=-0.033 Sum_probs=213.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cC----HHH
Q 004744 382 SFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNV----LYTIIINGYCRNGFVLEALKMRDEMLEKGCV-MD----VVT 452 (732)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~ 452 (732)
........+...|++++|...+++........+.. ++..+...+...|++++|...+++....... .+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34455667788999999999999988764333332 5667778888999999999999988763211 12 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHH
Q 004744 453 YNTILNGLCRAKMLTEADDLFNEMLER----GVF--P-DFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIK----PDIV 521 (732)
Q Consensus 453 ~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~ 521 (732)
+..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 567788899999999999999998763 221 2 2345667888899999999999999988764322 1235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHH
Q 004744 522 TYNTLIDGFCKVGEMEKANKLWADMISRKISP-NYISYG-----ILINGYCSMGHVTEAFRLWYEMVGKGIKP---TLVS 592 (732)
Q Consensus 522 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~ 592 (732)
.+..+...+...|++++|...+++.......+ ....+. ..+..+...|++++|...+++.......+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 67778888999999999999999987542121 111222 23345779999999999999987653221 1335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004744 593 CNTIIKGYCRSGDASKADEFLSKMVSE----GVDPDS-ISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVIL 667 (732)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 667 (732)
+..+...+...|++++|...+++.... |..++. ..+..+...+...|+.++|...+++.... .+. ....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~~~----~g~~ 329 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL--ANR----TGFI 329 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHH----HCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--hcc----ccHH
Confidence 677888999999999999999988653 222222 35667788889999999999999999872 111 1122
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004744 668 TGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 668 ~~~~~~g~~~~A~~~~~~~~~ 688 (732)
..+...| +....+++++..
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~ 348 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQ 348 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHH
T ss_pred HHHHHcc--HHHHHHHHHHHh
Confidence 3344555 566777777777
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=3.1e-11 Score=133.61 Aligned_cols=166 Identities=11% Similarity=-0.011 Sum_probs=152.2
Q ss_pred ChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004744 117 SSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLL 196 (732)
Q Consensus 117 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 196 (732)
+..+|+.|..+|.+.|++++|...|+++++. .+.+..+|..|+..|.+.|++++|+..|+++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l------------------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~A 69 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV------------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEA 69 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5789999999999999999999999999854 4566889999999999999999999999999
Q ss_pred HHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004744 197 RNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTV 276 (732)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 276 (732)
++.++. +..+|..+..+|.+.|++++|++.|+++++.. +.+..+++.+..+|.+.|++++|+..|++..+.... +..
T Consensus 70 l~l~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~ 146 (723)
T 4gyw_A 70 IRISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPD 146 (723)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChH
Confidence 998776 78999999999999999999999999999876 677889999999999999999999999999988543 678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004744 277 TYNTLINAYCREGFLEEAFQLMNSMSG 303 (732)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 303 (732)
.|..+...|...|++++|.+.++++.+
T Consensus 147 a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 147 AYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 899999999999999999999888764
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=1.2e-10 Score=106.40 Aligned_cols=166 Identities=14% Similarity=0.067 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA 249 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (732)
...+..++..|...|++++|+..|+++.+..+. +..++..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 456777888889999999999999988876554 67888888888889999999999999888764 5667778888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 004744 250 LCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRA 329 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 329 (732)
+...|++++|...++++.+... .+...+..+...+.+.|++++|.+.++++.+... .+..++..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888877643 3667777788888888888888888888776542 2567777777788888888888
Q ss_pred HHHHHHHHHC
Q 004744 330 KEVLDEMLQM 339 (732)
Q Consensus 330 ~~~~~~~~~~ 339 (732)
...++++.+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888777653
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=1.7e-10 Score=105.51 Aligned_cols=166 Identities=14% Similarity=0.035 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004744 118 SMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLR 197 (732)
Q Consensus 118 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 197 (732)
...|..++..+...|++++|...+.+++ ...+.+..++..++..|...|++++|...|+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 69 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVY------------------DADAFDVDVALHLGIAYVKTGAVDRGTELLERSL 69 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTC------------------CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHH------------------HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567788889999999999999998875 2344568889999999999999999999999999
Q ss_pred HCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004744 198 NKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVT 277 (732)
Q Consensus 198 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 277 (732)
+..+. +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.... +..+
T Consensus 70 ~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 146 (186)
T 3as5_A 70 ADAPD-NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKV 146 (186)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred hcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHH
Confidence 87654 78899999999999999999999999998875 677889999999999999999999999999887533 6788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004744 278 YNTLINAYCREGFLEEAFQLMNSMSGK 304 (732)
Q Consensus 278 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 304 (732)
+..++..+.+.|++++|.+.++.+.+.
T Consensus 147 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 147 HRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999998764
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=3.4e-10 Score=107.66 Aligned_cols=206 Identities=12% Similarity=0.020 Sum_probs=146.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004744 483 PDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILI 562 (732)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 562 (732)
.|+..+......+...|++++|+..|+..++...+++...+..+...+...|++++|.+.|++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567788888888888899999988888887654357777777888888888888888888888876433 666788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 004744 563 NGYCSMGHVTEAFRLWYEMVGKGIKPTL-------VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD---SISYNTLI 632 (732)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li 632 (732)
..|...|++++|+..+++.++.. +.+. ..|..+...+...|++++|++.|+++++. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 88888888888888888888763 4444 45777777788888888888888888774 344 45666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 004744 633 NGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR-STYTTLI 702 (732)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~ 702 (732)
..|... +...++++...+ ..+...|.... ....|.+++|...++++.+ +.|+. .+...+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 666544 344455555532 22344443333 2345668889999999888 67753 4444443
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=5.8e-10 Score=106.07 Aligned_cols=208 Identities=10% Similarity=-0.061 Sum_probs=162.4
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMV 247 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 247 (732)
.++..+..++..|.+.|++++|+..|+++++..+.++...+..+..++.+.|++++|.+.|+++++.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888999999999999999999999998765688888889999999999999999999999875 55778899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC---HhhHHHHH
Q 004744 248 NALCKDHKIDSAKMFLCEMEQKGVYPDT-------VTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPG---VFTYNSLI 317 (732)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li 317 (732)
..|.+.|++++|...+++..+..+. +. .+|..+...+.+.|++++|++.|+++.+. .|+ ..+|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999987433 44 45888888999999999999999999886 344 56777888
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 004744 318 NGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIG 388 (732)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~ 388 (732)
..|...| ...++++...+ ..+...|.... ....+.+++|...+++..+.... +..+...+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~ 222 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 8876554 44455555543 23444444333 23456689999999999886432 4444444433
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=1.4e-10 Score=114.23 Aligned_cols=227 Identities=15% Similarity=0.049 Sum_probs=159.6
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHH
Q 004744 496 CKDGNMNKALNLFDIMTQK-------SIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISR------KI-SPNYISYGIL 561 (732)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 561 (732)
...|++++|+..+++.++. ..+....++..+...|...|++++|...++++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766552 22334667888899999999999999999998864 21 2245578889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 004744 562 INGYCSMGHVTEAFRLWYEMVGK------G-IKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSE------GVDP-DSIS 627 (732)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~ 627 (732)
...|...|++++|...+++..+. . .+....++..+...|...|++++|.+.++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1334567888899999999999999999999874 1122 2567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCC-
Q 004744 628 YNTLINGFVREENMDKAFALVSKMENQ-------GLVPDV-ITYNVILTGFCRQGRMHDSELILWRMIE----KG-LNP- 693 (732)
Q Consensus 628 ~~~li~~~~~~g~~~~A~~~~~~~~~~-------g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g-~~p- 693 (732)
+..+...|...|++++|..+++++.+. ...+.. ..|..+...+...+....+.. +.++.. .+ ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 888999999999999999999998862 122222 234444444443333332222 222221 11 223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 694 DRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 694 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
...++..++.+|...|++++|.+++++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 246889999999999999999999999875
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=2.6e-10 Score=112.28 Aligned_cols=157 Identities=15% Similarity=0.002 Sum_probs=114.6
Q ss_pred HcCChHHHHHHHHHHHH-------CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------C-CCCCHHHHHHHH
Q 004744 182 QARKLREGSEVFRLLRN-------KGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRS------G-IELNVYTLNIMV 247 (732)
Q Consensus 182 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~ 247 (732)
..|++++|+..|+++++ ........++..+...+...|++++|...|+++++. + .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666666666666554 222335677888889999999999999999988764 2 133455788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC------CCCC-CHhhH
Q 004744 248 NALCKDHKIDSAKMFLCEMEQK------GVYP-DTVTYNTLINAYCREGFLEEAFQLMNSMSGK------GLKP-GVFTY 313 (732)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~ 313 (732)
..|...|++++|...++++.+. .-.| ...++..+...|...|++++|.+.++++... +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8899999999999988887764 1112 3566788888888889999998888887654 1122 35567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 004744 314 NSLINGLCKKGRCDRAKEVLDEMLQ 338 (732)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~~~~ 338 (732)
..+...|...|++++|...++++.+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7888888888888888888888775
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=5.9e-10 Score=110.46 Aligned_cols=163 Identities=11% Similarity=-0.047 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCC-CC----H
Q 004744 557 SYGILINGYCSMGHVTEAFRLWYEMVGK----GIKP-TLVSCNTIIKGYCRS-GDASKADEFLSKMVSEGVD-PD----S 625 (732)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~----~ 625 (732)
+|+.+...|...|++++|+..+++.++. |-.. -..+++.+...|... |++++|++.|++.++.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4444555555555555555555544432 1000 023455555555554 6666666666655542100 01 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---
Q 004744 626 ISYNTLINGFVREENMDKAFALVSKMENQGLVPDV------ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRS--- 696 (732)
Q Consensus 626 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--- 696 (732)
.++..++..+.+.|++++|+..++++.+....... ..|..++.++...|++++|...+++.++ +.|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C--------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcH
Confidence 34555556666666666666666666552111111 1344555555566666666666666655 444311
Q ss_pred ---HHHHHHHHHH--hcCCHHHHHHHHHHH
Q 004744 697 ---TYTTLINGHV--SQNNLKEAFRFHDEM 721 (732)
Q Consensus 697 ---~~~~l~~~~~--~~g~~~~A~~~~~~m 721 (732)
.+..++.++. ..+++++|++.++++
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 2233444443 334555555555444
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=1e-08 Score=99.15 Aligned_cols=247 Identities=11% Similarity=0.024 Sum_probs=153.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004744 423 NGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMN 502 (732)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 502 (732)
+-..-.|.+..++.-. .+.....+......+.++|...|++... ....|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 4445568888777633 2222222333334455667777776532 122334334444333 33322
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 503 KALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKI-SPNYISYGILINGYCSMGHVTEAFRLWYEM 581 (732)
Q Consensus 503 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (732)
|+..+++....+ .++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667777766554 34555556777788888888888888888776543 235667777888888888888888888888
Q ss_pred HhCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 582 VGKGIKP-----TLVSCNTIIKG--YCRSG--DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKME 652 (732)
Q Consensus 582 ~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 652 (732)
.+. .| +..+...++.+ ....| +.++|..+|+++.+. .|+..+...+..++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 765 55 24555555555 33334 788888888887664 3443333444447788888888888888665
Q ss_pred HC-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 653 NQ-----GL---VP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR 695 (732)
Q Consensus 653 ~~-----g~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 695 (732)
+. +. .| |+.++..++......|+ +|.++++++.+ ..|+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 42 00 13 44566455555556676 77888888888 67764
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=2.1e-09 Score=100.32 Aligned_cols=191 Identities=8% Similarity=-0.053 Sum_probs=121.9
Q ss_pred ChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004744 117 SSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLL 196 (732)
Q Consensus 117 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 196 (732)
+...+...+..+.+.|++++|...|.+++...+..+...... ..-......+.....++..|.+.|++++|+..|+++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWT--NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHH--HSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHh--hhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345566667788899999999999999986432111111000 000001111222333888888888888888888888
Q ss_pred HHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCC
Q 004744 197 RNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHK--IDSAKMFLCEMEQKGVYPD 274 (732)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~p~ 274 (732)
++..+. +...+..+..++...|++++|...|+++++.. |.+..++..+...|...|+ .+.+...+...... .|.
T Consensus 81 l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 156 (208)
T 3urz_A 81 LQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TKM 156 (208)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CHH
T ss_pred HHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--Cch
Confidence 887766 77888888888888888888888888888765 6667778777777765543 33445555554321 233
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 004744 275 TVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNS 315 (732)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 315 (732)
...+..+..++...|++++|...|++..+. .|+......
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 334444555666677888888888887764 455444333
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=2.5e-09 Score=99.91 Aligned_cols=168 Identities=14% Similarity=-0.000 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHHcC
Q 004744 172 IFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNS----------------LLGGLVKIGWVDLAREVYAEVVRSG 235 (732)
Q Consensus 172 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~ 235 (732)
.+-..+..+.+.|++++|+..|+++.+..+. +...|.. +..++.+.|++++|...|+++++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3444566788899999999999999887544 4555555 6666666666666666666666654
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhCCCCCCHhhH
Q 004744 236 IELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGF--LEEAFQLMNSMSGKGLKPGVFTY 313 (732)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~ 313 (732)
|.+..++..+..++...|++++|...|++..+..+. +..+|..+...|...|+ .+.+...++.... ..|....+
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 455666666666666666666666666666665332 45556666665554433 2333444444322 12222233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 004744 314 NSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTA 346 (732)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 346 (732)
..+..++...|++++|...|++.++. .|+..
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 33444455556666666666666553 34443
No 91
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.12 E-value=1.8e-07 Score=99.30 Aligned_cols=203 Identities=10% Similarity=0.000 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 468 EADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMI 547 (732)
Q Consensus 468 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 547 (732)
.+..+|++++...+. +...|...+..+.+.|+.+.|..+++..... +.+...+.. |....+.++. ++.+.
T Consensus 197 Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 197 RMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHH
Confidence 344555555554322 4555555555556666666666666666655 222222221 1111111111 11111
Q ss_pred HCC------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Q 004744 548 SRK------------ISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRS-GDASKADEFLS 614 (732)
Q Consensus 548 ~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 614 (732)
+.- .......|...+..+.+.+..+.|..+|+.. +.. +.+...|...+..-... ++.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 0011245666666666777888899999888 321 23444554333332333 36888999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 615 KMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 615 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
..++.. +.+...+...++...+.|+.+.|..+|+++. .....|...+.-=...|+.+.+..+++++.+
T Consensus 345 ~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888752 2234456667777788889999999888873 2456777777666677998888888888774
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=5.1e-08 Score=94.36 Aligned_cols=248 Identities=11% Similarity=0.025 Sum_probs=152.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 004744 388 GIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLT 467 (732)
Q Consensus 388 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 467 (732)
+-..-.|.+..++.-...+ ........-..+.++|...|++... ....|....+..+... ...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT---
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc---
Confidence 3445578888877733322 2222233334455677777766531 1223343344444433 3322
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 468 EADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSI-KPDIVTYNTLIDGFCKVGEMEKANKLWADM 546 (732)
Q Consensus 468 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 546 (732)
|+..|++..+.+ .++..++..+...+...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677777776654 34555666777788888888888888888766543 235666777788888888888888888888
Q ss_pred HHCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004744 547 ISRKISP-----NYISYGILING--YCSMG--HVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMV 617 (732)
Q Consensus 547 ~~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (732)
.+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 765 34 24444555545 23334 788888888887665 4553333344447778888888888888665
Q ss_pred HCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004744 618 SEG---------VDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVI 661 (732)
Q Consensus 618 ~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 661 (732)
+.. -+.|..++..+|......|+ +|.++++++.+ ..|+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 420 02345666566666666676 78888888887 456544
No 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.10 E-value=1.2e-07 Score=100.59 Aligned_cols=125 Identities=12% Similarity=0.061 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004744 521 VTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSM-GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKG 599 (732)
Q Consensus 521 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 599 (732)
..|...+....+.+..+.|..+|++. .. ...+...|...+..-... ++.+.|..+|+...+.. +.+...+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45666666666778899999999988 32 223444454333322223 36999999999988763 4445566777887
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 600 YCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
..+.|+.+.|+.+|+++. .....|...+..-...|+.+.+.++++++..
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888899999999999872 2567788888877888999999998888774
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.10 E-value=1.1e-08 Score=95.73 Aligned_cols=175 Identities=11% Similarity=0.013 Sum_probs=98.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 004744 539 ANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSG----DASKADEFLS 614 (732)
Q Consensus 539 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 614 (732)
|.+.|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..+...|.. | +.++|.++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 45555555566666666666666666665554 44555555555555 4 5666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 004744 615 KMVSEGVDPDSISYNTLINGFVR----EENMDKAFALVSKMENQGLV-PDVITYNVILTGFCR----QGRMHDSELILWR 685 (732)
Q Consensus 615 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 685 (732)
+..+.| +...+..|...|.. .+++++|+++|++..+.|.. .++..+..|...|.. .++.++|..+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665533 44555555555554 55666666666666653310 014555556666655 5566666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 004744 686 MIEKGLNPDRSTYTTLINGHVSQ-N-----NLKEAFRFHDEMLQRG 725 (732)
Q Consensus 686 ~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g 725 (732)
..+. .++...+..|+.+|... | ++++|..++++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6652 22344555666666543 2 6666666666665554
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.10 E-value=5.6e-08 Score=95.22 Aligned_cols=223 Identities=12% Similarity=0.021 Sum_probs=152.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc-
Q 004744 181 VQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIG--WVDLAREVYAEVVRSGIELNVYTLNIMVNAL----CKD- 253 (732)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 253 (732)
.+....++|+..++.++..++. +..+|+.-..++...| +++++++.++.++... |.+..+|+.-...+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 3344457899999999888877 7888888888888888 8899999998888765 56666676555554 444
Q ss_pred --CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC----
Q 004744 254 --HKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLE--EAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGR---- 325 (732)
Q Consensus 254 --g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---- 325 (732)
+++++++.+++.+.+...+ +-.+|+.-.-.+.+.|.++ ++++.++++++.++. |..+|+.-...+...|+
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 6788888888888877544 6777777777777777777 888888888877655 77777776666666665
Q ss_pred --hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhH-HHHHHHHHHhCC--CCCCHhHHHHHHHHHHhCCCHHHHH
Q 004744 326 --CDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSE-AEEIFCEMSRRG--VAPDIVSFSTLIGIFSRNGQLDRAL 400 (732)
Q Consensus 326 --~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (732)
++++++.+++++... +-|...|+-+...+.+.|+... +.++..++.+.+ -..+...+..++..+.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 667777777766654 4466666666666666665333 344555444322 1124555666666666666666666
Q ss_pred HHHHHHHH
Q 004744 401 MYFREMKS 408 (732)
Q Consensus 401 ~l~~~~~~ 408 (732)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666654
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=4.7e-09 Score=103.93 Aligned_cols=162 Identities=10% Similarity=-0.056 Sum_probs=94.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC----CCccC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CC--CHHHHHHH
Q 004744 177 IRTYVQARKLREGSEVFRLLRNK----GICFS-INACNSLLGGLVKIGWVDLAREVYAEVVRSGI---EL--NVYTLNIM 246 (732)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 246 (732)
+..|...|++++|++.|+++.+. |..++ ..+|+.+..+|.+.|++++|+..|+++++... .+ -..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34577788899999888887653 21111 45778888888888888888888888765310 00 12355556
Q ss_pred HHHHHhc-CChhHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHh------hHH
Q 004744 247 VNALCKD-HKIDSAKMFLCEMEQKGVYP-D----TVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVF------TYN 314 (732)
Q Consensus 247 ~~~~~~~-g~~~~A~~~~~~~~~~g~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~ 314 (732)
...|... |++++|+..|++..+..... + ..+++.+...|.+.|++++|+..|++..+........ .|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 6666664 66666666666655431100 0 2345555666666666666666666665543221111 344
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 004744 315 SLINGLCKKGRCDRAKEVLDEMLQ 338 (732)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~ 338 (732)
.+..++...|++++|...|++.++
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555556666666666655554
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=4.8e-09 Score=89.78 Aligned_cols=130 Identities=18% Similarity=0.124 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004744 172 IFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALC 251 (732)
Q Consensus 172 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (732)
.|..++..|...|++++|+..|+++.+.++. +...+..+...+...|++++|...|+++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4566777788888888888888887776544 56677777777777788888888887777654 455666667777777
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004744 252 KDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGK 304 (732)
Q Consensus 252 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 304 (732)
..|++++|.+.++++.+.... +..++..++..+.+.|++++|.+.++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777777665322 4556666677777777777777777766553
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=3.4e-09 Score=103.06 Aligned_cols=104 Identities=12% Similarity=-0.094 Sum_probs=86.7
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCCH
Q 004744 166 CGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFS---INACNSLLGGLVKIGWVDLAREVYAEVVRSGI--ELNV 240 (732)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~ 240 (732)
.+.++..+-.++..+.+.|++++|+..|+++++..+. + ..++..+..++.+.|++++|...|+++++... +...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3456777888899999999999999999999987654 3 67888999999999999999999999998642 1234
Q ss_pred HHHHHHHHHHHh--------cCChhHHHHHHHHHHhCC
Q 004744 241 YTLNIMVNALCK--------DHKIDSAKMFLCEMEQKG 270 (732)
Q Consensus 241 ~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~g 270 (732)
.++..+..++.+ .|++++|...|+++.+..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 567778888888 999999999999998874
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.07 E-value=6.7e-08 Score=94.66 Aligned_cols=234 Identities=8% Similarity=-0.042 Sum_probs=189.5
Q ss_pred CChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCccCHHHHH
Q 004744 132 RRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQAR--KLREGSEVFRLLRNKGICFSINACN 209 (732)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (732)
...++|+.+...++.. .|.+..+|+.-...+...| ++++++..++.++..++. +..+|+
T Consensus 47 e~s~~aL~~t~~~L~~------------------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~ 107 (306)
T 3dra_A 47 EYSERALHITELGINE------------------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWN 107 (306)
T ss_dssp CCSHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHH
T ss_pred CCCHHHHHHHHHHHHH------------------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHH
Confidence 4446899999998854 4566788998888888888 999999999999999887 777887
Q ss_pred HHHHHH----HHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCCHHHHHH
Q 004744 210 SLLGGL----VKI---GWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKID--SAKMFLCEMEQKGVYPDTVTYNT 280 (732)
Q Consensus 210 ~ll~~~----~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~g~~p~~~~~~~ 280 (732)
.-...+ .+. +++++++++++.+++.. +.+..+|+--...+.+.|.++ +++++++++.+..+. |..+|+.
T Consensus 108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~ 185 (306)
T 3dra_A 108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSH 185 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 776666 555 78999999999999876 788889998888888899988 999999999998765 8888988
Q ss_pred HHHHHHHcCC------HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCCHHhHHHH
Q 004744 281 LINAYCREGF------LEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDR-AKEVLDEMLQMG--LSPDTATYNTL 351 (732)
Q Consensus 281 li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~g--~~~~~~~~~~l 351 (732)
-...+.+.|. ++++++.++.++...+. |...|+.+...+.+.|+..+ +..+..++.+.+ -+.+...+..+
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 264 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL 264 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 8777777776 99999999999987655 89999999999999988555 556776666532 13467788899
Q ss_pred HHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 004744 352 LVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLI 387 (732)
Q Consensus 352 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 387 (732)
+..|.+.|+.++|.++++.+.+.--+.....|+..+
T Consensus 265 a~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 265 AKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 999999999999999999998631122444555443
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.06 E-value=2.9e-09 Score=118.64 Aligned_cols=182 Identities=8% Similarity=-0.102 Sum_probs=148.4
Q ss_pred HhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHH
Q 004744 129 VRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINAC 208 (732)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 208 (732)
...|++++|...+.+++...- .......+.+...+..++..|.+.|++++|+..|+++.+.++. +...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~----------~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~ 470 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGAL----------DADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLV 470 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-----------------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcc----------cccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHH
Confidence 678999999999999872100 0000224566788999999999999999999999999988766 88999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004744 209 NSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCRE 288 (732)
Q Consensus 209 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 288 (732)
..+..++.+.|++++|.+.|+++++.. +.+...+..+..++.+.|++++ +..|++..+.... +...|..+...|.+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAE 547 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHc
Confidence 999999999999999999999999875 6678889999999999999999 9999999987543 678899999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 004744 289 GFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGR 325 (732)
Q Consensus 289 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 325 (732)
|++++|++.|+++.+.+.. +..+|..+..++...++
T Consensus 548 g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 548 GDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred CCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9999999999999876432 46677777777766554
No 101
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=5.7e-09 Score=101.47 Aligned_cols=191 Identities=11% Similarity=-0.043 Sum_probs=128.9
Q ss_pred CCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHH
Q 004744 115 KHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFR 194 (732)
Q Consensus 115 ~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 194 (732)
..++..+..+...+.+.|++++|...|.+++...+. .+..+.++..++.+|.+.|++++|+..|+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~ 76 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT---------------HEWAADAQFYLARAYYQNKEYLLAASEYE 76 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC---------------STTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---------------CcchHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 346788888999999999999999999999854211 11226788899999999999999999999
Q ss_pred HHHHCCCc-c-CHHHHHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004744 195 LLRNKGIC-F-SINACNSLLGGLVK--------IGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLC 264 (732)
Q Consensus 195 ~~~~~~~~-~-~~~~~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (732)
++++..+. + ...++..+..++.+ .|++++|...|+++++.. |.+......+... .
T Consensus 77 ~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~--------------~ 141 (261)
T 3qky_A 77 RFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI--------------R 141 (261)
T ss_dssp HHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH--------------H
T ss_pred HHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH--------------H
Confidence 99987542 2 25677888889999 999999999999999864 3343333222111 1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC--CHhhHHHHHHHHHhc----------CChhHHHHH
Q 004744 265 EMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKP--GVFTYNSLINGLCKK----------GRCDRAKEV 332 (732)
Q Consensus 265 ~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~~ 332 (732)
.+... -...+..+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...
T Consensus 142 ~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~ 217 (261)
T 3qky_A 142 ELRAK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVEL 217 (261)
T ss_dssp HHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHH
Confidence 11100 11124455666666677777777766666542211 233555566666544 666677777
Q ss_pred HHHHHHC
Q 004744 333 LDEMLQM 339 (732)
Q Consensus 333 ~~~~~~~ 339 (732)
|+++++.
T Consensus 218 ~~~~~~~ 224 (261)
T 3qky_A 218 YERLLQI 224 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=1.2e-08 Score=87.18 Aligned_cols=127 Identities=17% Similarity=0.282 Sum_probs=72.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004744 593 CNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCR 672 (732)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 672 (732)
+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|..+++++...+ +.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4445555555566666666665555432 2234455555555666666666666666665531 2234455566666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 673 QGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 673 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
.|++++|...++++.+ ..| +...+..++.++...|++++|.+.++++++
T Consensus 82 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666665 333 345566666666666666666666666653
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.03 E-value=1.5e-09 Score=95.27 Aligned_cols=143 Identities=13% Similarity=-0.014 Sum_probs=85.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH
Q 004744 126 HFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSI 205 (732)
Q Consensus 126 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (732)
.++...|++++|+..+.+.+. ..+.++..+-.+...|.+.|++++|++.|+++++..+. +.
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~------------------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~ 65 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP------------------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DP 65 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC------------------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHcChHHHHHHHHHHhcc------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Confidence 344455666666666655541 12223445556677777777777777777777766555 66
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCCHHHHHHHHHH
Q 004744 206 NACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMF-LCEMEQKGVYPDTVTYNTLINA 284 (732)
Q Consensus 206 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~g~~p~~~~~~~li~~ 284 (732)
.+|..+..++.+.|++++|...|+++++.. |.+..++..+...|.+.|++++|.+. +++..+..+. +..+|......
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~l 143 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQL 143 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHH
Confidence 677777777777777777777777776654 44566666666667777766655443 4666555322 44555555555
Q ss_pred HHHcC
Q 004744 285 YCREG 289 (732)
Q Consensus 285 ~~~~g 289 (732)
+.+.|
T Consensus 144 l~~~G 148 (150)
T 4ga2_A 144 LDCEG 148 (150)
T ss_dssp HHTCC
T ss_pred HHHhC
Confidence 55544
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=2e-09 Score=119.84 Aligned_cols=148 Identities=11% Similarity=-0.074 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 004744 239 NVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLIN 318 (732)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 318 (732)
+...+..+...+.+.|++++|...|+++.+.... +...|..+...|.+.|++++|++.|++..+.... +...|..+..
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~ 509 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAA 509 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 3344444444445555555555555554443221 3444444555555555555555555554443222 3444445555
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 004744 319 GLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFS 391 (732)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 391 (732)
.|.+.|++++ ...|++.++.+ +.+...|..+..++.+.|++++|.+.|+++.+.+.. +...+..+..++.
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLL 579 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC
T ss_pred HHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHH
Confidence 5555555555 55555544432 223344455555555555555555555554443211 2334444444443
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.03 E-value=3.4e-09 Score=95.98 Aligned_cols=163 Identities=13% Similarity=0.034 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H
Q 004744 172 IFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA-L 250 (732)
Q Consensus 172 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 250 (732)
.+..++..+.+.|++++|+..|+++.+..+. +...+..+..++.+.|++++|...|+++++.. |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 4556778889999999999999998877655 78889999999999999999999999987654 255444433322 2
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCChhHH
Q 004744 251 CKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKP-GVFTYNSLINGLCKKGRCDRA 329 (732)
Q Consensus 251 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A 329 (732)
...+...+|...+++..+..+. +...+..+...+.+.|++++|.+.|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2333445678888888877433 57788889999999999999999999988875433 356788888899999999999
Q ss_pred HHHHHHHHH
Q 004744 330 KEVLDEMLQ 338 (732)
Q Consensus 330 ~~~~~~~~~ 338 (732)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887653
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=8e-10 Score=96.99 Aligned_cols=145 Identities=7% Similarity=-0.105 Sum_probs=91.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004744 176 VIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHK 255 (732)
Q Consensus 176 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (732)
|+..+...|++++|+..|+......+. +...+..+...|.+.|++++|.+.|+++++.. |.+..+|..+..+|.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 445566677777888777777655332 34455667777777777777777777777764 5566677777777777777
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 004744 256 IDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQL-MNSMSGKGLKPGVFTYNSLINGLCKKG 324 (732)
Q Consensus 256 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g 324 (732)
+++|+..|++..+..+. +..+|..+...|.+.|++++|.+. +++..+..+. +..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 77777777777766432 456667777777777776655544 4565554322 4555555555555544
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.00 E-value=2.6e-08 Score=93.12 Aligned_cols=177 Identities=12% Similarity=0.003 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChhHHHHH
Q 004744 187 REGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDH----KIDSAKMF 262 (732)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 262 (732)
.+|++.|++..+.| ++.++..+...|...+++++|.++|+++.+.| +...+..|...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35667777777765 67777777777777778888888887777654 55666666666666 5 67777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHh----cCChhHHHHHH
Q 004744 263 LCEMEQKGVYPDTVTYNTLINAYCR----EGFLEEAFQLMNSMSGKGLK-PGVFTYNSLINGLCK----KGRCDRAKEVL 333 (732)
Q Consensus 263 ~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~ 333 (732)
|++..+.| +..++..|...|.. .+++++|++.|++..+.|.. .+..++..|...|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77777664 56666677777766 67777777777777766431 125666777777766 66777777777
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHcC-C-----CHhHHHHHHHHHHhCC
Q 004744 334 DEMLQMGLSPDTATYNTLLVESCRK-E-----NMSEAEEIFCEMSRRG 375 (732)
Q Consensus 334 ~~~~~~g~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~g 375 (732)
++..+. +.+...+..|...|... | +.++|.+.|+...+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777665 22344555566665432 2 6777777777766655
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=3.1e-09 Score=96.22 Aligned_cols=164 Identities=8% Similarity=-0.053 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004744 119 MSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRN 198 (732)
Q Consensus 119 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 198 (732)
..+..+...+.+.|++++|...|.+++.. .|.++..+..++..|.+.|++++|+..|+++..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE------------------LQSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH------------------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 45667788899999999999999988743 345688899999999999999999999999987
Q ss_pred CCCccCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHH
Q 004744 199 KGICFSINACNSLLGG-LVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYP-DTV 276 (732)
Q Consensus 199 ~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~ 276 (732)
..+ +...+..+... +.+.+....|...|+++++.. |.+...+..+...+...|++++|...|+++.+..+.+ +..
T Consensus 69 ~~p--~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 145 (176)
T 2r5s_A 69 EYQ--DNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGE 145 (176)
T ss_dssp GGC--CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTH
T ss_pred ccC--ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHH
Confidence 754 55444333322 223344456899999998875 6678899999999999999999999999999885443 356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004744 277 TYNTLINAYCREGFLEEAFQLMNSMSG 303 (732)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 303 (732)
.+..++..+...|+.++|...|++...
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 889999999999999999999998754
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=1.6e-08 Score=99.74 Aligned_cols=166 Identities=12% Similarity=-0.012 Sum_probs=124.5
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHH
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYT-LNIM 246 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l 246 (732)
.+...+..+...+.+.|++++|+..|+++++..+. +...+..+...+.+.|++++|...++++.... |+... ....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 44566677788888888888888888888887766 77888888888888888888888888876653 34333 2233
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCC
Q 004744 247 VNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKP-GVFTYNSLINGLCKKGR 325 (732)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 325 (732)
...+.+.++.++|...+++.....+. +...+..+...|...|++++|++.|+++....... +...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 34466777788888888888776433 66778888888888888888888888887764331 25678888888888888
Q ss_pred hhHHHHHHHHHH
Q 004744 326 CDRAKEVLDEML 337 (732)
Q Consensus 326 ~~~A~~~~~~~~ 337 (732)
.++|...+++.+
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888888877755
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=4.9e-08 Score=92.33 Aligned_cols=184 Identities=11% Similarity=-0.034 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHH
Q 004744 520 IVTYNTLIDGFCKVGEMEKANKLWADMISRKISPN--YISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTL---VSCN 594 (732)
Q Consensus 520 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~ 594 (732)
...+..+...+.+.|++++|...|+++++..+... ...+..+..+|.+.|++++|+..|+++++.. |.+. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 34455566677888888888888888887533211 3466677788888888888888888887753 2222 2344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H------------
Q 004744 595 TIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDV-I------------ 661 (732)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~------------ 661 (732)
.+..++...|.. .++ .|..+...+...|++++|+..|+++++. .|+. .
T Consensus 83 ~~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHH
Confidence 444444432100 000 0011111122234444444444444441 2221 1
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004744 662 -----TYNVILTGFCRQGRMHDSELILWRMIEKGLNPD----RSTYTTLINGHVSQNNLKEAFRFHDEMLQRG 725 (732)
Q Consensus 662 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 725 (732)
....++..|.+.|++++|...|+++++ ..|+ ...+..++.+|.+.|++++|.+.++.+...+
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 113466778899999999999999998 5564 2578899999999999999999999988643
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=5.9e-08 Score=91.75 Aligned_cols=184 Identities=13% Similarity=0.038 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---HHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFS--INACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNV---YTLN 244 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~ 244 (732)
+..+-.++..+.+.|++++|+..|+++.+..+... ...+..+..++.+.|++++|+..|+++++.. |.+. .++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 45566778889999999999999999998754421 4678888999999999999999999998864 2232 2444
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 004744 245 IMVNALCK------------------DHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGL 306 (732)
Q Consensus 245 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 306 (732)
.+..++.+ .|++++|...|+++.+..+. +..++.+..... . +...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----~------~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----F------LKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----H------HHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----H------HHHHH-----
Confidence 45555544 45566666666666655221 122222111100 0 00000
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHcCCCHhHHHHHHHHHHhCC
Q 004744 307 KPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDT----ATYNTLLVESCRKENMSEAEEIFCEMSRRG 375 (732)
Q Consensus 307 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 375 (732)
......+...|.+.|++++|...|+++++. .|+. ..+..+..++.+.|+.++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011234567788888888888888888875 2332 467778888888899999988888887764
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=2e-08 Score=98.98 Aligned_cols=177 Identities=11% Similarity=0.000 Sum_probs=145.5
Q ss_pred HHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHH
Q 004744 103 FIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQ 182 (732)
Q Consensus 103 ~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 182 (732)
+-.++....|+ +...+..+...+.+.|++++|...|.+++.. .+.++..+..++..|.+
T Consensus 105 l~~~l~~~lp~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------~P~~~~a~~~la~~~~~ 163 (287)
T 3qou_A 105 IRALLDXVLPR---EEELXAQQAMQLMQESNYTDALPLLXDAWQL------------------SNQNGEIGLLLAETLIA 163 (287)
T ss_dssp HHHHHHHHSCC---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------TTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh------------------CCcchhHHHHHHHHHHH
Confidence 33444444443 5677888999999999999999999999854 45678899999999999
Q ss_pred cCChHHHHHHHHHHHHCCCccCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 004744 183 ARKLREGSEVFRLLRNKGICFSINAC-NSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKM 261 (732)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (732)
.|++++|+..|+++....+ +.... ......+.+.++.++|.+.|++++... |.+...+..+...+...|++++|..
T Consensus 164 ~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~ 240 (287)
T 3qou_A 164 LNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALE 240 (287)
T ss_dssp TTCHHHHHHHHTTSCGGGC--SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHhCchhhc--chHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHH
Confidence 9999999999999987754 44333 333345778889999999999999876 7788999999999999999999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004744 262 FLCEMEQKGVYP-DTVTYNTLINAYCREGFLEEAFQLMNSMSG 303 (732)
Q Consensus 262 ~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 303 (732)
.|+++.+..... +...+..++..|...|+.++|...+++...
T Consensus 241 ~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 241 LLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999874331 267899999999999999999999987653
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=7e-09 Score=103.47 Aligned_cols=222 Identities=12% Similarity=0.042 Sum_probs=153.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004744 463 AKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCK-DGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANK 541 (732)
Q Consensus 463 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 541 (732)
.|++++|.+++++..+.... .+.. .+++++|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 56778888888877664221 1233 57788888877765 345778899999999
Q ss_pred HHHHHHHCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 004744 542 LWADMISRK----ISP-NYISYGILINGYCSMGHVTEAFRLWYEMVGK----GIKPT--LVSCNTIIKGYCRSGDASKAD 610 (732)
Q Consensus 542 ~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~ 610 (732)
.|.+..+.. ..+ -..+|+.+...|...|++++|+..|++.++. | .+. ..+++.+...|.. |++++|+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 998876531 110 1346778888888999999999999987653 2 121 3567778888877 9999999
Q ss_pred HHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHH
Q 004744 611 EFLSKMVSEGVDP-D----SISYNTLINGFVREENMDKAFALVSKMENQGL-VPD----VITYNVILTGFCRQGRMHDSE 680 (732)
Q Consensus 611 ~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~ 680 (732)
+.|++.++..... + ..++..+...|.+.|++++|+..++++.+... .++ ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999888742111 1 45677888889999999999999999887211 111 125566666777789999999
Q ss_pred HHHHHHHHcCCCCCHH-H-----HHHHHHHHHhcCCHHHHHH
Q 004744 681 LILWRMIEKGLNPDRS-T-----YTTLINGHVSQNNLKEAFR 716 (732)
Q Consensus 681 ~~~~~~~~~g~~p~~~-~-----~~~l~~~~~~~g~~~~A~~ 716 (732)
..|++.+ +.|+.. + ...++.++ ..|+.+.+.+
T Consensus 216 ~~~~~al---~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY---SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT---TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh---CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999887 456554 3 33444444 5677666655
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=2.8e-08 Score=108.69 Aligned_cols=155 Identities=10% Similarity=-0.084 Sum_probs=115.5
Q ss_pred CCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHH
Q 004744 131 GRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNS 210 (732)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (732)
.|++++|...+.+++. ..+.+...|..++..|.+.|++++|++.|+++.+..+. +..++..
T Consensus 2 ~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 62 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR------------------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVAR 62 (568)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHH
T ss_pred CccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 4677888888888763 24456788888999999999999999999999888765 7888889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--
Q 004744 211 LLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCRE-- 288 (732)
Q Consensus 211 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~-- 288 (732)
+...+.+.|++++|.+.|+++++.. +.+...+..+..+|.+.|++++|.+.+++..+.... +...+..+...+...
T Consensus 63 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 63 LGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhc
Confidence 9999999999999999999988875 667788888889999999999999999998887433 567788888888888
Q ss_pred -CCHHHHHHHHHHHhhCCC
Q 004744 289 -GFLEEAFQLMNSMSGKGL 306 (732)
Q Consensus 289 -g~~~~A~~~~~~m~~~g~ 306 (732)
|++++|.+.+++..+.+.
T Consensus 141 ~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp CTTHHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHhcCC
Confidence 899999999998887643
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=2.3e-08 Score=109.41 Aligned_cols=154 Identities=10% Similarity=-0.072 Sum_probs=119.6
Q ss_pred cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 004744 183 ARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMF 262 (732)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (732)
.|++++|++.|+++.+..+. +...|..+...+.+.|++++|.+.|+++++.. +.+..++..+...|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999999887655 78899999999999999999999999999875 66788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 004744 263 LCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKK---GRCDRAKEVLDEMLQM 339 (732)
Q Consensus 263 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~ 339 (732)
+++..+.... +...+..+...|.+.|++++|.+.+++..+.... +...+..+...+... |+.++|.+.+++.++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999887533 6788999999999999999999999999886433 678889999999999 9999999999999876
Q ss_pred C
Q 004744 340 G 340 (732)
Q Consensus 340 g 340 (732)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.89 E-value=3.2e-08 Score=98.63 Aligned_cols=223 Identities=9% Similarity=-0.038 Sum_probs=161.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004744 428 NGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCR-AKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALN 506 (732)
Q Consensus 428 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (732)
.|++++|.+++++..+.... .+.+ .+++++|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 57788999999887764211 1233 57889998888765 346778999999999
Q ss_pred HHHHHHHCCC----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CC--CHHHHHHHHHHHHhcCCHHHHHH
Q 004744 507 LFDIMTQKSI----K-PDIVTYNTLIDGFCKVGEMEKANKLWADMISRK--I-SP--NYISYGILINGYCSMGHVTEAFR 576 (732)
Q Consensus 507 ~~~~~~~~~~----~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~-~~--~~~~~~~li~~~~~~g~~~~A~~ 576 (732)
.|.+..+... . .-..+|..+...|.+.|++++|...|++.++.. . .+ ...++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 9988765311 1 113577888889999999999999999887541 1 11 13567788888988 99999999
Q ss_pred HHHHHHhCCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 004744 577 LWYEMVGKGI---KP--TLVSCNTIIKGYCRSGDASKADEFLSKMVSE----GVDPD-SISYNTLINGFVREENMDKAFA 646 (732)
Q Consensus 577 ~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~ 646 (732)
.|++.++... .+ ...++..+...|.+.|++++|++.|++.++. +..+. ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999876411 11 1467888999999999999999999999863 11111 2356677777888899999999
Q ss_pred HHHHHHHCCCCCC---H---HHHHHHHHHHHhcCCHHHHHH
Q 004744 647 LVSKMENQGLVPD---V---ITYNVILTGFCRQGRMHDSEL 681 (732)
Q Consensus 647 ~~~~~~~~g~~p~---~---~~~~~l~~~~~~~g~~~~A~~ 681 (732)
.+++.. . .|+ . .....++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999998 4 342 1 2344555555 5677766655
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.86 E-value=1.6e-06 Score=85.78 Aligned_cols=181 Identities=8% Similarity=-0.063 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 171 LIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIG-WVDLAREVYAEVVRSGIELNVYTLNIMVNA 249 (732)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (732)
.+++.+-....+.+..++|++.+++++..++. +..+|+.-...+...| .+++++++++.++... +.+..+|+--...
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 44555555555556667788888888887766 7777877777777777 4778888888777664 5666677766666
Q ss_pred HHhc-C-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 004744 250 LCKD-H-KIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLE--------EAFQLMNSMSGKGLKPGVFTYNSLING 319 (732)
Q Consensus 250 ~~~~-g-~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~li~~ 319 (732)
+.+. + ++++++.+++.+.+...+ |-.+|+.-.-.+.+.|.++ ++++.++++++..+. |..+|+.....
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~l 210 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYL 210 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 6665 5 677777777777766543 5666666555555555544 666666666665443 55666666555
Q ss_pred HHhcCC-------hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 004744 320 LCKKGR-------CDRAKEVLDEMLQMGLSPDTATYNTLLVESC 356 (732)
Q Consensus 320 ~~~~g~-------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 356 (732)
+.+.++ ++++++.+++++... +-|...|+-+-..+.
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLK 253 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 555554 344555554444432 234444444333333
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.86 E-value=1.1e-06 Score=86.91 Aligned_cols=219 Identities=10% Similarity=0.051 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHH
Q 004744 221 VDLAREVYAEVVRSGIELNVYTLNIMVNALCKDH-KIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCRE-G-FLEEAFQL 297 (732)
Q Consensus 221 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~-g-~~~~A~~~ 297 (732)
.++|+++++.++..+ +.+..+|+.-...+...| .+++++.+++.+....++ +..+|+.-...+.+. + ++++++++
T Consensus 70 se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 344555555555543 344444554444444445 355555555555555433 444555544444443 4 55555555
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCC-------Hh
Q 004744 298 MNSMSGKGLKPGVFTYNSLINGLCKKGRCD--------RAKEVLDEMLQMGLSPDTATYNTLLVESCRKEN-------MS 362 (732)
Q Consensus 298 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-------~~ 362 (732)
++.+.+...+ |..+|+.-.-.+.+.|.++ ++++.++++++.. +.|..+|+.....+.+.++ ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHH
Confidence 5555554333 4455544444444444444 5555555555443 3344455554444444443 44
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCH--------------------HHHHHHHHHHHHCC-----CCCCHHH
Q 004744 363 EAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQL--------------------DRALMYFREMKSAG-----LVPDNVL 417 (732)
Q Consensus 363 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~l~~~~~~~~-----~~~~~~~ 417 (732)
++++.+++++...+. |...|+.+-..+.+.|+. ....+...++...+ -.+....
T Consensus 226 eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 555555555444322 455555544444443332 22222222222211 1234455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004744 418 YTIIINGYCRNGFVLEALKMRDEMLEK 444 (732)
Q Consensus 418 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 444 (732)
...+++.|...|+.++|.++++.+.+.
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 555556666666666666666665543
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=4.1e-07 Score=89.92 Aligned_cols=165 Identities=12% Similarity=-0.006 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--H
Q 004744 557 SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTL------VSCNTIIKGYCRSGDASKADEFLSKMVSEGV---DPD--S 625 (732)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~ 625 (732)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|++.+++..+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3344555666777777777777766654211 11 1233344556667778888888777765311 111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-
Q 004744 626 ISYNTLINGFVREENMDKAFALVSKMENQ-GLVPD-----VITYNVILTGFCRQGRMHDSELILWRMIEK----GLNPD- 694 (732)
Q Consensus 626 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~- 694 (732)
.+|+.++..|...|++++|+..++++.+. ...|+ ..++..++..|...|++++|..+++++++. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46777777788888888888888777631 01121 146777777888888888888888877651 11111
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 004744 695 RSTYTTLINGHVSQNNLKEA-FRFHDEML 722 (732)
Q Consensus 695 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 722 (732)
..+|..++.+|.+.|++++| ...+++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 46777788888888888888 66676654
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=4.9e-07 Score=89.37 Aligned_cols=163 Identities=12% Similarity=-0.011 Sum_probs=119.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHH
Q 004744 561 LINGYCSMGHVTEAFRLWYEMVGKGI-KPTL----VSCNTIIKGYCRSGDASKADEFLSKMVSEGV-DPD----SISYNT 630 (732)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~ 630 (732)
.+..+...|++++|...+++..+... .|+. ..+..+...+...|++++|++.++++.+... .++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45667888999999999988876421 2221 1233466666777889999999999887422 222 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 004744 631 LINGFVREENMDKAFALVSKMEN----Q-GLVPD-VITYNVILTGFCRQGRMHDSELILWRMIEK----GLNPD-RSTYT 699 (732)
Q Consensus 631 li~~~~~~g~~~~A~~~~~~~~~----~-g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~ 699 (732)
++..|...|++++|+.+++++.+ . +..+. ..+|..++..|.+.|++++|..+++++++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88999999999999999998884 1 12222 247888999999999999999999988751 22222 57899
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 004744 700 TLINGHVSQNN-LKEAFRFHDEMLQ 723 (732)
Q Consensus 700 ~l~~~~~~~g~-~~~A~~~~~~m~~ 723 (732)
.++.+|.+.|+ +++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999994 6999999988864
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=8.4e-08 Score=80.96 Aligned_cols=111 Identities=7% Similarity=-0.098 Sum_probs=84.8
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMV 247 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 247 (732)
.....+..++..|.+.|++++|++.|+++++..+. +..+|..+..++.+.|++++|++.|+++++.+ +.+...|..+.
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg 88 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHH
Confidence 34566777888888888888888888888887665 77888888888888888888888888888765 56677788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 004744 248 NALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTL 281 (732)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 281 (732)
.++...|++++|...|++..+..+. +...+..|
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 8888888888888888888776432 44444444
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.79 E-value=1.7e-07 Score=81.62 Aligned_cols=105 Identities=11% Similarity=-0.026 Sum_probs=87.2
Q ss_pred CCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 004744 164 SPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTL 243 (732)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 243 (732)
...|.++..+..++..|.+.|++++|+..|+++.+..+. +...|..+..++.+.|++++|...|+++++.. |.+...+
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~ 107 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPV 107 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHH
Confidence 334556778888888899999999999999998888766 78888888888889999999999999888875 6667788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004744 244 NIMVNALCKDHKIDSAKMFLCEMEQKG 270 (732)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~~~~~g 270 (732)
..+..+|.+.|++++|...|++..+..
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888888888888763
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=5.8e-07 Score=83.95 Aligned_cols=131 Identities=8% Similarity=-0.076 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004744 171 LIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNAL 250 (732)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (732)
..+..++..|...|++++|+..|+++. .|+..+|..+...+.+.|++++|.+.|+++++.. +.+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345567788899999999999999874 4588899999999999999999999999998875 66788899999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 004744 251 CKDHKIDSAKMFLCEMEQKGVY--------------P-DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGL 306 (732)
Q Consensus 251 ~~~g~~~~A~~~~~~~~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 306 (732)
.+.|++++|...|++..+.... | +...+..+...|.+.|++++|.+.|+...+...
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999999886422 1 126788888999999999999999999987643
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=3e-07 Score=85.93 Aligned_cols=133 Identities=12% Similarity=0.011 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004744 555 YISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLING 634 (732)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 634 (732)
...+..+...+...|++++|+..|++.. .|+...+..+...|...|++++|++.+++.++.. +.+...+..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 3445667778889999999999998774 5688889999999999999999999999988753 3457788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 635 FVREENMDKAFALVSKMENQGLVPDV----------------ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR 695 (732)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~g~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 695 (732)
|...|++++|++.++++.+.. +.+. ..+..++.++.+.|++++|...|+++.+ +.|+.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 999999999999999998842 1122 6788888899999999999999999998 77876
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.74 E-value=3.2e-07 Score=87.59 Aligned_cols=188 Identities=10% Similarity=-0.071 Sum_probs=131.3
Q ss_pred HcCChHHHHHHHHHHHHCCCccCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCCC---------------
Q 004744 182 QARKLREGSEVFRLLRNKGICFSINACNSL-------LGGLVKIGWVDLAREVYAEVVRSGIELN--------------- 239 (732)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------- 239 (732)
..++..+|.+.|.++.+..+. ....|..+ ..++.+.++..++...+...+.. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 579999999999999998877 78899888 68888888888888877776552 221
Q ss_pred -------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC--H
Q 004744 240 -------VYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPG--V 310 (732)
Q Consensus 240 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~ 310 (732)
......+...+...|++++|.++|+.+...+ |+......+...+.+.|++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223345667777888888888888777654 333366666667788888888888887655431 111 2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHcCCCHhHHHHHHHHHHhCC
Q 004744 311 FTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPD--TATYNTLLVESCRKENMSEAEEIFCEMSRRG 375 (732)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 375 (732)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3566777777788888888888887764322143 2345556667777788888888877777653
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=2.4e-07 Score=78.06 Aligned_cols=111 Identities=9% Similarity=-0.019 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004744 118 SMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLR 197 (732)
Q Consensus 118 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 197 (732)
...+......|.+.|++++|...|.+++.. .+.++.+|..++.+|.+.|++++|+..|++++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR------------------DPENAILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 456778888999999999999999999854 45678899999999999999999999999999
Q ss_pred HCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 198 NKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVN 248 (732)
Q Consensus 198 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (732)
+.++. +..+|..+..++...|++++|.+.|+++++.. |.+...+..+..
T Consensus 75 ~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 75 RLDSK-FIKGYIRKAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred Hhhhh-hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 98766 78999999999999999999999999999875 556666655544
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.72 E-value=8.3e-08 Score=83.58 Aligned_cols=103 Identities=12% Similarity=-0.022 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 004744 589 TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVIL 667 (732)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 667 (732)
+...+..+...+.+.|++++|+..|++++... +.+...|..+..+|...|++++|+..|+++.+ +.| ++..|..++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHH
Confidence 34556666677777777777777777777643 23466677777777777777777777777777 344 345677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004744 668 TGFCRQGRMHDSELILWRMIEKGLNPDRS 696 (732)
Q Consensus 668 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 696 (732)
.+|.+.|++++|...|+++++ +.|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 777777777777777777777 556553
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.72 E-value=4.1e-07 Score=80.93 Aligned_cols=130 Identities=7% Similarity=-0.085 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA 249 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (732)
+..|..++..|...|++++|+..|+++.+..+. +..++..+...+...|++++|.+.|.++++.. +.+..++..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 566778888889999999999999998887655 67888888888888999999999998888764 5667778888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHh
Q 004744 250 LCKDHKIDSAKMFLCEMEQKGVYPDTVTYN--TLINAYCREGFLEEAFQLMNSMS 302 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 302 (732)
+.+.|++++|...|+++.+.... +...+. .++..+.+.|++++|++.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888888776432 444443 33334667788888887777653
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.71 E-value=4.1e-06 Score=82.65 Aligned_cols=163 Identities=8% Similarity=-0.014 Sum_probs=120.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 004744 526 LIDGFCKVGEMEKANKLWADMISRKI-SPNY----ISYGILINGYCSMGHVTEAFRLWYEMVGKGIK-PT----LVSCNT 595 (732)
Q Consensus 526 li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 595 (732)
.+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667888899999999988876422 1221 13334666677778999999999998874222 22 336888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHH
Q 004744 596 IIKGYCRSGDASKADEFLSKMVSE-----GVDPD-SISYNTLINGFVREENMDKAFALVSKMEN----QGLVPD-VITYN 664 (732)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~p~-~~~~~ 664 (732)
+...|...|++++|...|+++++. +..+. ..++..++..|.+.|++++|+..++++.+ .+..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 889999999999999999998842 11122 34778889999999999999999998876 222222 56888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 004744 665 VILTGFCRQGR-MHDSELILWRMIE 688 (732)
Q Consensus 665 ~l~~~~~~~g~-~~~A~~~~~~~~~ 688 (732)
.++.++.+.|+ +++|...++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 89999999994 6999999999875
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=6.1e-08 Score=95.10 Aligned_cols=194 Identities=11% Similarity=0.000 Sum_probs=119.9
Q ss_pred ChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004744 117 SSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLL 196 (732)
Q Consensus 117 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 196 (732)
+...+..++..+.+.|++++|...|.+++.. .+.+...|..++.+|.+.|++++|+..|+++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 64 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR------------------NPLVAVYYTNRALCYLKMQQPEQALADCRRA 64 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4567778888888888888888888888753 3456778888888888888888888888888
Q ss_pred HHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004744 197 RNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTV 276 (732)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 276 (732)
++..+. +...+..+..++.+.|++++|...|.++++.+ +.+...+...+....+. .++... ..........+..
T Consensus 65 l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~ 138 (281)
T 2c2l_A 65 LELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESE 138 (281)
T ss_dssp TTSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHH
Confidence 887665 77888888888888888888888888877643 11111111112111111 111111 1122222233444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhc-CChhHHHHHHHHHHH
Q 004744 277 TYNTLINAYCREGFLEEAFQLMNSMSGKGLKPG-VFTYNSLINGLCKK-GRCDRAKEVLDEMLQ 338 (732)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~-g~~~~A~~~~~~~~~ 338 (732)
....+... ..|++++|++.++...+. .|+ ......+...+.+. +.+++|.++|.++.+
T Consensus 139 i~~~l~~l--~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 139 LHSYLTRL--IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHH--HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHH--HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44333322 257778888777777664 333 23333333334443 556777777776654
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=2.9e-06 Score=83.73 Aligned_cols=167 Identities=8% Similarity=-0.036 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HH
Q 004744 522 TYNTLIDGFCKVGEMEKANKLWADMISRKISPNY-----ISYGILINGYCSMGHVTEAFRLWYEMVGKGI---KPT--LV 591 (732)
Q Consensus 522 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 591 (732)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777888888888888877765322111 1234455667788899999999998875421 112 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-H
Q 004744 592 SCNTIIKGYCRSGDASKADEFLSKMVSE-GVDPD-----SISYNTLINGFVREENMDKAFALVSKMENQ----GLVPD-V 660 (732)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~ 660 (732)
+++.+...|...|++++|...++++.+. ...|+ ..++..++..|.+.|++++|+..+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999998732 01122 257888999999999999999999998762 11111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 004744 661 ITYNVILTGFCRQGRMHDS-ELILWRMIE 688 (732)
Q Consensus 661 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 688 (732)
.+|..++.+|.+.|++++| ...++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 787888765
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.68 E-value=4.3e-08 Score=96.20 Aligned_cols=99 Identities=9% Similarity=-0.079 Sum_probs=71.2
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 169 NSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVN 248 (732)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (732)
+...+..++..|.+.|++++|+..|+++++..+. +...|..+..++.+.|++++|...++++++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456666777777778888888888777776544 67777777777777777777777777777654 556667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 004744 249 ALCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~~ 269 (732)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776654
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.66 E-value=7.7e-07 Score=74.51 Aligned_cols=114 Identities=18% Similarity=0.062 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA 249 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (732)
...|..++..|...|++++|++.|+++.+..+. +..++..+...+.+.|++++|..+|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 456667777777777777777777777765443 56667777777777777777777777776653 4455666666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004744 250 LCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYC 286 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 286 (732)
+.+.|++++|...++++.+.... +...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 66667777777766666655322 3444444444443
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=1.3e-07 Score=90.22 Aligned_cols=199 Identities=9% Similarity=-0.092 Sum_probs=150.6
Q ss_pred hCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCC-
Q 004744 130 RGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLV-------IRTYVQARKLREGSEVFRLLRNKGI- 201 (732)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~- 201 (732)
..++..+|.+.|.++++. .+.....|..+ ...+.+.++..+++..++......+
T Consensus 18 ~~~d~~~A~~~F~~a~~~------------------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~ 79 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY------------------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMS 79 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGG
T ss_pred cCCCHHHHHHHHHHHHHh------------------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 689999999999999864 44556777777 6777777788888888888776211
Q ss_pred ----ccC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 004744 202 ----CFS---------------INACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMF 262 (732)
Q Consensus 202 ----~~~---------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (732)
..+ ...+-.+...|...|++++|.++|+.+...+ +.+. ..-.+...+.+.+++++|+..
T Consensus 80 ~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~-~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 80 TLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHL-VAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp GGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHH-HHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchH-HHHHHHHHHHHcCCHHHHHHH
Confidence 111 2345567788999999999999999887654 3334 666667789999999999999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004744 263 LCEMEQKGVYPD--TVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPG--VFTYNSLINGLCKKGRCDRAKEVLDEMLQ 338 (732)
Q Consensus 263 ~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 338 (732)
|+...+.. .|. ...+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 158 l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 158 VKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98666542 121 34677889999999999999999999985433243 44677888899999999999999999998
Q ss_pred CCCCCCHHhHHHH
Q 004744 339 MGLSPDTATYNTL 351 (732)
Q Consensus 339 ~g~~~~~~~~~~l 351 (732)
. .|+...+..|
T Consensus 237 ~--~P~~~~~~aL 247 (282)
T 4f3v_A 237 T--HPEPKVAAAL 247 (282)
T ss_dssp H--SCCHHHHHHH
T ss_pred c--CCcHHHHHHH
Confidence 6 4554444433
No 135
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.65 E-value=1.8e-05 Score=77.78 Aligned_cols=195 Identities=8% Similarity=0.009 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 004744 501 MNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVG--EMEKANKLWADMISRKISPNYISYGILINGYCSMGH-VTEAFRL 577 (732)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~ 577 (732)
+++++.+++.++....+ +..+|+.-...+.+.+ .+++++.+++++.+..+. |..+|+--...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 45555555555554332 5555555444455555 356666666666655332 55555555555555555 4666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 004744 578 WYEMVGKGIKPTLVSCNTIIKGYCRS--------------GDASKADEFLSKMVSEGVDPDSISYNTLINGFVRE----- 638 (732)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 638 (732)
++++++.. +.|...|+.....+.+. +.++++++.+.+++... +-|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 66666553 44555555554444433 34667777777776643 23556666555555444
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 004744 639 ------ENMDKAFALVSKMENQGLVPDVITYNVILTGF-----CRQGRMHDSELILWRMIEKGLNPDR-STYTTLING 704 (732)
Q Consensus 639 ------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~ 704 (732)
+.++++++.++++.+ ..||. .|..+..++ ...|..++...++.++.+ ++|.. .-|..+...
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHHHH
Confidence 457788888888887 56664 343322222 245777788888888888 77753 445555433
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.65 E-value=6.1e-07 Score=76.25 Aligned_cols=121 Identities=7% Similarity=-0.099 Sum_probs=92.6
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004744 166 CGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNI 245 (732)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (732)
.+.++..|..++..|.+.|++++|+..|+++.+..+. +...+..+...+...|++++|.+.|+++++.. +.+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 4456788888899999999999999999998887654 67888888888888888888888888888764 556777777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004744 246 MVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREG 289 (732)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 289 (732)
+..++.+.|++++|...|++..+.... +...+..+...+.+.|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 788888888888888888887766322 3455666666665544
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=7.2e-07 Score=79.33 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004744 118 SMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLR 197 (732)
Q Consensus 118 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 197 (732)
...|..+...+...|++++|...|.+++.. .+.+..++..++..|...|++++|+..|++..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 74 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL------------------NPSNAIYYGNRSLAYLRTECYGYALGDATRAI 74 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467788899999999999999999999853 34467889999999999999999999999999
Q ss_pred HCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCChhHHHHHHHHHHh
Q 004744 198 NKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIM--VNALCKDHKIDSAKMFLCEMEQ 268 (732)
Q Consensus 198 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 268 (732)
+..+. +...|..+..++.+.|++++|.+.|+++++.. +.+...+..+ +..+.+.|++++|...+.....
T Consensus 75 ~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 75 ELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88655 78899999999999999999999999999875 4555565443 4447788999999998887643
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.64 E-value=7.6e-07 Score=75.27 Aligned_cols=120 Identities=8% Similarity=-0.100 Sum_probs=85.3
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 169 NSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVN 248 (732)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (732)
+...+..++..+...|++++|+..|+++....+. +...+..+...+...|++++|.+.+..+++.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 4566777788888888888888888888776544 66777777778888888888888888777654 455666777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 004744 249 ALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFL 291 (732)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 291 (732)
.+.+.|++++|...|++..+.... +...+..+...+.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 777777777777777777665322 455666666666665553
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.63 E-value=8.4e-07 Score=75.38 Aligned_cols=120 Identities=6% Similarity=-0.045 Sum_probs=103.1
Q ss_pred CCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHH
Q 004744 115 KHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFR 194 (732)
Q Consensus 115 ~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 194 (732)
..+..+|..++..+.+.|++++|...+.+++. ..+.+..++..++..|...|++++|+..|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 74 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIK------------------RNPKDAKLYSNRAACYTKLLEFQLALKDCE 74 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45678899999999999999999999999973 244568889999999999999999999999
Q ss_pred HHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004744 195 LLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDH 254 (732)
Q Consensus 195 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (732)
++.+..+. +...+..+..++.+.|++++|.+.|+++++.. +.+...+..+..++.+.|
T Consensus 75 ~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 75 ECIQLEPT-FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHhCCC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 99987655 78899999999999999999999999998864 455667777777776655
No 140
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.61 E-value=1.7e-05 Score=78.04 Aligned_cols=167 Identities=9% Similarity=-0.038 Sum_probs=111.9
Q ss_pred HHHcCChH-HHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 180 YVQARKLR-EGSEVFRLLRNKGICFSINACNSLLGGLVKIGW----------VDLAREVYAEVVRSGIELNVYTLNIMVN 248 (732)
Q Consensus 180 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (732)
..+.|.++ +|+..++.++..++. +..+|+.--..+...+. +++++.+++.++... |.+..+|+--..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455544 789999999988877 77788776655554443 577778888877764 667777777666
Q ss_pred HHHhcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc--
Q 004744 249 ALCKDHK--IDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGF-LEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKK-- 323 (732)
Q Consensus 249 ~~~~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-- 323 (732)
.+.+.|+ ++++..+++.+.+..+. |-.+|+.-...+...|. ++++++.++.+++.++. |..+|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhh
Confidence 6767663 67888888888877544 66777777766777777 57888888888776554 777777766665554
Q ss_pred ------------CChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 004744 324 ------------GRCDRAKEVLDEMLQMGLSPDTATYNTL 351 (732)
Q Consensus 324 ------------g~~~~A~~~~~~~~~~g~~~~~~~~~~l 351 (732)
+.++++++.+.+.+... +-|..+|+-+
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 23455555555555443 3344445433
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.61 E-value=3e-07 Score=83.08 Aligned_cols=123 Identities=5% Similarity=-0.048 Sum_probs=99.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCh--
Q 004744 180 YVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA-LCKDHKI-- 256 (732)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 256 (732)
+...|++++|+..|++..+..+. +...|..+...+...|++++|...|+++++.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 34678899999999998887665 78889999999999999999999999998765 5577788888888 7788998
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 004744 257 DSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKG 305 (732)
Q Consensus 257 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 305 (732)
++|...++++.+.... +...+..+...|.+.|++++|...|+++.+..
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999998887433 56778888889999999999999999988764
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.59 E-value=7.7e-07 Score=89.67 Aligned_cols=93 Identities=10% Similarity=0.016 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 004744 626 ISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLIN 703 (732)
Q Consensus 626 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 703 (732)
..|..+..+|.+.|++++|+..++++++. .| +...|..++.+|...|++++|...|+++++ +.| +...+..+..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 55666666666666666666666666663 33 445666666666666666666666666666 455 3456666666
Q ss_pred HHHhcCCHHHH-HHHHHHHH
Q 004744 704 GHVSQNNLKEA-FRFHDEML 722 (732)
Q Consensus 704 ~~~~~g~~~~A-~~~~~~m~ 722 (732)
++...|++++| ...+++|.
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666 33445443
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=1.5e-06 Score=72.69 Aligned_cols=113 Identities=20% Similarity=0.134 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004744 205 INACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINA 284 (732)
Q Consensus 205 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 284 (732)
...|..+...+.+.|++++|.+.|+++++.. +.+..++..+...+.+.|++++|...++++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4566666677777777777777777776653 44566666666677777777777777777666532 245566666666
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 004744 285 YCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGL 320 (732)
Q Consensus 285 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 320 (732)
|.+.|++++|.+.++++...... +...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 66777777777777666654322 344444444443
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=4e-07 Score=79.32 Aligned_cols=102 Identities=13% Similarity=-0.032 Sum_probs=82.0
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004744 166 CGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNI 245 (732)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (732)
.+.+...+..++..+.+.|++++|+..|+++....+. +...|..+..++.+.|++++|...|+++++.. |.+..++..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~ 94 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFH 94 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence 3445667777888888888888888888888877665 77888888888888888888888888888765 556777777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 004744 246 MVNALCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~~~~~ 269 (732)
+..+|...|++++|...|++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888888887765
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.58 E-value=9.6e-07 Score=88.96 Aligned_cols=132 Identities=14% Similarity=-0.036 Sum_probs=94.2
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 004744 169 NSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFS--------------INACNSLLGGLVKIGWVDLAREVYAEVVRS 234 (732)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 234 (732)
+...+..++..|.+.|++++|+..|+++++..+... ..+|..+..++.+.|++++|+..|+++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356778888888888999999999988887765522 467777777777777777777777777776
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHh
Q 004744 235 GIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEA-FQLMNSMS 302 (732)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 302 (732)
. +.+..++..+..+|...|++++|+..|+++.+.... +..++..+...+.+.|++++| .+++..|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 556667777777777777777777777777766432 456666677777777777766 34555543
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.58 E-value=2.7e-07 Score=83.33 Aligned_cols=122 Identities=8% Similarity=0.007 Sum_probs=103.7
Q ss_pred HhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHH
Q 004744 129 VRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINAC 208 (732)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 208 (732)
...|++++|...+.+++.. .+.++.+|..++..|...|++++|+..|+++.+..+. +...+
T Consensus 21 ~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 81 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA------------------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELY 81 (177)
T ss_dssp C-----CCCCHHHHHHHHH------------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHH
T ss_pred hhccCHHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHH
Confidence 4578889999999988753 3456789999999999999999999999999987665 78888
Q ss_pred HHHHHH-HHHcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004744 209 NSLLGG-LVKIGWV--DLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKG 270 (732)
Q Consensus 209 ~~ll~~-~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 270 (732)
..+..+ +.+.|++ ++|...|+++++.. +.+...+..+...|...|++++|...|+++.+..
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 889988 7899998 99999999999875 6678889999999999999999999999999874
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=1.5e-06 Score=73.34 Aligned_cols=120 Identities=10% Similarity=-0.073 Sum_probs=104.2
Q ss_pred ChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004744 117 SSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLL 196 (732)
Q Consensus 117 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 196 (732)
+...+..++..+...|++++|...+.+++.. .+.+..++..++..|...|++++|+..|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 72 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL------------------NPANAVYFCNRAAAYSKLGNYAGAVQDCERA 72 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 4567888899999999999999999999853 3445788999999999999999999999999
Q ss_pred HHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004744 197 RNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKI 256 (732)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (732)
.+..+. +...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++.+.|++
T Consensus 73 ~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 73 ICIDPA-YSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HhcCcc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 987655 68899999999999999999999999999875 56778888888888887765
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=7.1e-07 Score=82.50 Aligned_cols=156 Identities=10% Similarity=-0.041 Sum_probs=87.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCH
Q 004744 532 KVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGK----GI-KPTLVSCNTIIKGYCRSGDA 606 (732)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 606 (732)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++.... +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34556666553333322 12223445556666666666666666666665541 11 11234556666667777777
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCC
Q 004744 607 SKADEFLSKMVSE----GVDP--DSISYNTLINGFVREENMDKAFALVSKMENQG---LVPD--VITYNVILTGFCRQGR 675 (732)
Q Consensus 607 ~~A~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g---~~p~--~~~~~~l~~~~~~~g~ 675 (732)
++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..... -.+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777766543 1011 13345666677777777777777777765410 0111 2245667777777888
Q ss_pred HHHHHHHHHHHHH
Q 004744 676 MHDSELILWRMIE 688 (732)
Q Consensus 676 ~~~A~~~~~~~~~ 688 (732)
+++|...++++.+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877777765
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=5.5e-07 Score=83.27 Aligned_cols=156 Identities=12% Similarity=-0.057 Sum_probs=88.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCC
Q 004744 181 VQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRS----GI-ELNVYTLNIMVNALCKDHK 255 (732)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~ 255 (732)
...|++++|.+.++.+.. .+.....++..+...+...|++++|...+++++.. +. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456788888885555443 22235667777778888888888888888877651 11 2233456666666777777
Q ss_pred hhHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCC-CCHhhHHHHHHHHHhcC
Q 004744 256 IDSAKMFLCEMEQK----GVYP--DTVTYNTLINAYCREGFLEEAFQLMNSMSGK----GLK-PGVFTYNSLINGLCKKG 324 (732)
Q Consensus 256 ~~~A~~~~~~~~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g 324 (732)
+++|...+++..+. +-.+ ...++..+...+...|++++|.+.+++.... +.. .-..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777776665543 1011 1334566666666677777777766665431 100 01123345555555666
Q ss_pred ChhHHHHHHHHHH
Q 004744 325 RCDRAKEVLDEML 337 (732)
Q Consensus 325 ~~~~A~~~~~~~~ 337 (732)
++++|...+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666555544
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=3.4e-07 Score=79.79 Aligned_cols=110 Identities=11% Similarity=-0.059 Sum_probs=69.5
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004744 192 VFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGV 271 (732)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 271 (732)
.|+++....+. +...+..+...+.+.|++++|...|++++... +.+...|..+..+|.+.|++++|...|++.....+
T Consensus 9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34555544332 45556666667777777777777777766654 55666666666667777777777777777666533
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004744 272 YPDTVTYNTLINAYCREGFLEEAFQLMNSMSGK 304 (732)
Q Consensus 272 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 304 (732)
. +...+..+...|...|++++|.+.|+...+.
T Consensus 87 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 X-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp T-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 4555666666666677777777666666553
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.53 E-value=1.8e-06 Score=72.71 Aligned_cols=98 Identities=11% Similarity=-0.027 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA 249 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (732)
...|..++..+.+.|++++|+..|+++++..+. +...|..+..++.+.|++++|...|+++++.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 455667777888888888888888888877655 67778888888888888888888888887764 5566777777777
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 004744 250 LCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~ 269 (732)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77888888888877777765
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.52 E-value=3.7e-07 Score=77.08 Aligned_cols=104 Identities=12% Similarity=0.103 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------HHH
Q 004744 591 VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD--------VIT 662 (732)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~~~ 662 (732)
..+..+...+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|++.+++.++ +.|+ ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHH
Confidence 445566666777777777777777766642 22455666666777777777777777776665 2221 124
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004744 663 YNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYT 699 (732)
Q Consensus 663 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 699 (732)
|..++.++...|++++|+..|++.++ ..||+....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 55566666666777777777777666 555655443
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=1.8e-07 Score=86.39 Aligned_cols=131 Identities=11% Similarity=0.065 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004744 591 VSCNTIIKGYCRSGDASKADEFLSKMVSEGVD-P--------------DSISYNTLINGFVREENMDKAFALVSKMENQG 655 (732)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 655 (732)
..+..+...+...|++++|++.|++.++.... | ....|..+..+|.+.|++++|+..++++.+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI- 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence 34445555566666666666666666553211 1 0257777888888889999999988888874
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCC
Q 004744 656 LVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAF-RFHDEMLQRG 725 (732)
Q Consensus 656 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~g 725 (732)
.| +...|..++.+|...|++++|...|+++++ +.| +...+..+..++...|+.+++. ..++.|...|
T Consensus 118 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 118 -DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp -STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred -CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44 567788888888888999999999999888 666 4677888888888888888777 5566665443
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.50 E-value=1.1e-06 Score=74.09 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 004744 557 SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEG--VDPD----SISYNT 630 (732)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~ 630 (732)
.+..+...+.+.|++++|+..|++.++.. |.+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34444444455555555555555444432 3334444444445555555555555554444321 0011 123344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004744 631 LINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 631 li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
+...+...|++++|++.|++.++
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444445555555555554444
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.50 E-value=1.1e-06 Score=75.85 Aligned_cols=102 Identities=11% Similarity=-0.071 Sum_probs=84.5
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004744 166 CGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNI 245 (732)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (732)
.+.+...+..++..+.+.|++++|+..|+++...++. +...|..+..++.+.|++++|...|+++++.. |.+...+..
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 91 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFH 91 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHH
Confidence 3445666777888888999999999999998887765 78888888888999999999999999888875 667777888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 004744 246 MVNALCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~~~~~ 269 (732)
+..+|...|++++|...|++..+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888889999998888888765
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=5.9e-06 Score=68.12 Aligned_cols=99 Identities=10% Similarity=-0.126 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA 249 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (732)
+..+..++..+...|++++|+..|+++....+. +...+..+...+.+.|++++|...++++++.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445666677777777777777777777766544 56667777777777777777777777776653 4455666666666
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 004744 250 LCKDHKIDSAKMFLCEMEQKG 270 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~g 270 (732)
+.+.|++++|...+++..+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 666777777777776666553
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.43 E-value=1.7e-06 Score=72.22 Aligned_cols=92 Identities=13% Similarity=0.042 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 004744 628 YNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGH 705 (732)
Q Consensus 628 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 705 (732)
+..+...+.+.|++++|+..++++++ ..| +...|..++.++...|++++|+..|+++++ +.| +...+..++.+|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 34455667778888888888888877 344 566777777778888888888888888887 666 457777888888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004744 706 VSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 706 ~~~g~~~~A~~~~~~m~~ 723 (732)
...|++++|...+++.++
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888888773
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=2.5e-06 Score=73.64 Aligned_cols=101 Identities=11% Similarity=-0.054 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 004744 589 TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVIL 667 (732)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 667 (732)
+...+..+...+.+.|++++|+..|++++... +.+...|..+..+|.+.|++++|+..++++... .| ++..|..++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHH
Confidence 44566677778888999999999999888753 236777888888899999999999999998884 44 556778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004744 668 TGFCRQGRMHDSELILWRMIEKGLNPD 694 (732)
Q Consensus 668 ~~~~~~g~~~~A~~~~~~~~~~g~~p~ 694 (732)
.+|...|++++|...|+++++ +.|+
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~--~~p~ 118 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARA--LAAA 118 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 888999999999999999887 5553
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.41 E-value=5.4e-06 Score=69.71 Aligned_cols=96 Identities=16% Similarity=0.055 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 004744 590 LVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILT 668 (732)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 668 (732)
...+......+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..++++++. .| +...|..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 3455566666777777777777777776643 234666777777777777777777777777763 34 4556777777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004744 669 GFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 669 ~~~~~g~~~~A~~~~~~~~~ 688 (732)
++...|++++|...|+++++
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 77777777777777777776
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.41 E-value=3e-06 Score=69.25 Aligned_cols=101 Identities=15% Similarity=-0.040 Sum_probs=77.1
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHH
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIEL--NVYTLNI 245 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ 245 (732)
.+...|..++..|.+.|++++|+..|+++.+..+. +...+..+...+.+.|++++|.+.|+++++.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 34566777788888888888888888888876554 67777888888888888888888888887754 44 5667777
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHhCC
Q 004744 246 MVNALCKD-HKIDSAKMFLCEMEQKG 270 (732)
Q Consensus 246 l~~~~~~~-g~~~~A~~~~~~~~~~g 270 (732)
+..++.+. |++++|.+.+++..+..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777777 88888888887777663
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.41 E-value=4.4e-06 Score=74.15 Aligned_cols=102 Identities=7% Similarity=-0.132 Sum_probs=86.5
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004744 167 GSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIM 246 (732)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 246 (732)
..+...|..++..|.+.|++++|+..|+++++..+. +...|..+..++.+.|++++|+..|+++++.. +.+...+..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345677888889999999999999999999887665 78888889999999999999999999988875 5667888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 004744 247 VNALCKDHKIDSAKMFLCEMEQKG 270 (732)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~~~~~g 270 (732)
..+|.+.|++++|...|++..+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 888888999999999888888763
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.40 E-value=3.9e-06 Score=77.24 Aligned_cols=124 Identities=12% Similarity=-0.075 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFS---------------INACNSLLGGLVKIGWVDLAREVYAEVVRS 234 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 234 (732)
...+..++..|.+.|++++|+..|+++.+..+... ..+|..+..++.+.|++++|...++.+++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45567778888899999999999999887644311 256666666666677777777777666665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004744 235 GIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAF 295 (732)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 295 (732)
. +.+..++..+..+|...|++++|...|++..+.... +..++..+...+.+.++.+++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 3 445556666666666666666666666666655322 4445555555555555554444
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.39 E-value=2.4e-06 Score=69.84 Aligned_cols=96 Identities=9% Similarity=-0.058 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 004744 625 SISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD---RSTYTTL 701 (732)
Q Consensus 625 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l 701 (732)
...+..+...+...|++++|...++++.+.. +.+...|..++..+...|++++|...++++.+ ..|+ ...|..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHHHH
Confidence 3445566667777777777777777777631 23456677777777777777888777777777 4444 5677777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHH
Q 004744 702 INGHVSQ-NNLKEAFRFHDEMLQ 723 (732)
Q Consensus 702 ~~~~~~~-g~~~~A~~~~~~m~~ 723 (732)
+.++... |++++|.+.+++.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 7777777 888888887777764
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.39 E-value=8.9e-06 Score=67.01 Aligned_cols=111 Identities=12% Similarity=-0.011 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004744 118 SMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLR 197 (732)
Q Consensus 118 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 197 (732)
+..+..++..+...|++++|...+.+++.. .+.++..+..++..|...|++++|+..++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL------------------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH------------------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 567888899999999999999999999853 34467889999999999999999999999999
Q ss_pred HCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 198 NKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVN 248 (732)
Q Consensus 198 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (732)
+..+. +...+..+..++.+.|++++|.+.|+++.+.+ +.+...+..+..
T Consensus 66 ~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 66 DLKPD-WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 88655 78899999999999999999999999998764 455555554443
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=2.2e-06 Score=72.35 Aligned_cols=112 Identities=10% Similarity=0.079 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 004744 591 VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGL--VPD----VITYN 664 (732)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~p~----~~~~~ 664 (732)
..+..+...+...|++++|...+++..+.. +.+...+..++..+...|++++|...++++.+... .++ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555666666666666666666666542 23455666666666677777777777776665210 111 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004744 665 VILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGH 705 (732)
Q Consensus 665 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 705 (732)
.++.++...|++++|...|+++.+ ..|+...+..+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHHH
Confidence 777777777777777777777777 455655555554443
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.36 E-value=3.1e-06 Score=71.43 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-------HHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELN-------VYT 242 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~ 242 (732)
+..|..++..|...|++++|+..|+++.+..+. +...+..+...+...|++++|...|+++++.. +.+ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHH
Confidence 455667777888888888888888888776544 66777777777888888888888887776643 112 455
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004744 243 LNIMVNALCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 269 (732)
+..+..++.+.|++++|...|+++.+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 666666666666666666666666654
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.36 E-value=5.4e-06 Score=70.81 Aligned_cols=101 Identities=9% Similarity=-0.075 Sum_probs=79.3
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004744 167 GSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIM 246 (732)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 246 (732)
+.++..|..++..|...|++++|+..|+++.+..+. +...|..+..++.+.|++++|...|+++++.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 345677888888888888888888888888877655 67788888888888888888888888887765 5567777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 004744 247 VNALCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~~~~~ 269 (732)
..++...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888888777654
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=8.5e-06 Score=69.58 Aligned_cols=99 Identities=8% Similarity=0.004 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 004744 587 KPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNV 665 (732)
Q Consensus 587 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ 665 (732)
+.+...+..+...+...|++++|...|++.+... +.+...|..+..++...|++++|...++++.+. .| +...|..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 82 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFF 82 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHH
Confidence 4567788888888889999999999998888753 235778888888888999999999999988884 34 5678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004744 666 ILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 666 l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
++.++...|++++|...|+++++
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888889999999999988887
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=5.1e-06 Score=73.72 Aligned_cols=103 Identities=11% Similarity=0.014 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 004744 587 KPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNV 665 (732)
Q Consensus 587 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ 665 (732)
+.+...+..+...+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..++++++. .| +...|..
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 84 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSR 84 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 3456778888999999999999999999999854 236788999999999999999999999999984 45 5778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004744 666 ILTGFCRQGRMHDSELILWRMIEKGLNPD 694 (732)
Q Consensus 666 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 694 (732)
+..+|...|++++|...|+++++ +.|+
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~--~~p~ 111 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIE--AEGN 111 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HHSS
T ss_pred HHHHHHHccCHHHHHHHHHHHHH--hCCC
Confidence 99999999999999999999998 5664
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.34 E-value=3.9e-06 Score=69.96 Aligned_cols=96 Identities=13% Similarity=-0.079 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004744 172 IFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALC 251 (732)
Q Consensus 172 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (732)
.+..++..+.+.|++++|+..|+++++..+. +...|..+..++.+.|++++|+..|+++++.. |.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3556677788888888888888888887665 77888888888888888888888888888765 556777777888888
Q ss_pred hcCChhHHHHHHHHHHhC
Q 004744 252 KDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 252 ~~g~~~~A~~~~~~~~~~ 269 (732)
+.|++++|+..+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888887765
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=2.1e-05 Score=82.42 Aligned_cols=197 Identities=7% Similarity=-0.020 Sum_probs=95.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC
Q 004744 492 IHGHCKDGNMNKALNLFDIMTQKSIKPDI----------------VTYNTLIDGFCKVGEMEKANKLWADMISRKIS-PN 554 (732)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 554 (732)
...+.+.|++++|++.|..+++....... ..+..+...|.+.|++++|.+.+.++.+.... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44556677777777777777765332110 12445566666666666666666655432100 11
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC-
Q 004744 555 Y----ISYGILINGYCSMGHVTEAFRLWYEMVGK----GIKP-TLVSCNTIIKGYCRSGDASKADEFLSKMVSE--GVD- 622 (732)
Q Consensus 555 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~- 622 (732)
. .+.+.+...+...|++++|..++++.... +..+ -..++..++..|...|++++|..+++++... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11222222333445566666666554421 1111 1334455555566666666666666555432 111
Q ss_pred -C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 623 -P-DSISYNTLINGFVREENMDKAFALVSKMEN----QGLVPD--VITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 623 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
+ ....+..++..|...|++++|..++++... .+.++. ...+..++..+...|++++|...|.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 123455555555666666666666555443 111111 12334444444555566666655555554
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=1.6e-05 Score=68.68 Aligned_cols=111 Identities=19% Similarity=0.147 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHH
Q 004744 588 PTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD----SISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVIT 662 (732)
Q Consensus 588 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~ 662 (732)
.+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...|...|++++|+..+++..+. .| +...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH
Confidence 34566666777777777777777777777664 344 466677777777788888888888777763 34 4567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 004744 663 YNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLING 704 (732)
Q Consensus 663 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 704 (732)
|..++.++...|++++|...|+++++ +.|+ ...+..+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHH
Confidence 77777777888888888888888877 5564 4444444443
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=3.2e-06 Score=74.46 Aligned_cols=132 Identities=11% Similarity=0.016 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 004744 592 SCNTIIKGYCRSGDASKADEFLSKMVSEGV-DPD----SISYNTLINGFVREENMDKAFALVSKMENQ----GLVP-DVI 661 (732)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~ 661 (732)
++..+...+...|++++|.+.+++..+... .++ ...+..+...+...|++++|...++++.+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455555666666666666666666554210 011 235666777778888888888888876651 1111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 662 TYNVILTGFCRQGRMHDSELILWRMIEK----GLNP-DRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 662 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 723 (732)
++..++..+...|++++|...+++..+. +..+ ...++..++.++...|++++|.+.+++.++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6777888888999999999999888752 1111 135788889999999999999999998875
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.29 E-value=8.4e-06 Score=70.03 Aligned_cols=59 Identities=7% Similarity=-0.028 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 662 TYNVILTGFCRQGRMHDSELILWRMIEKGL-------NPD-RSTY----TTLINGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 662 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-------~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~ 722 (732)
.|..+..++.+.|++++|+..++++++ + .|+ ...| ...+.++...|++++|+..|++.+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALH--YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 555666666666666666666666665 4 564 3455 666666666666666666666665
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1.8e-05 Score=68.39 Aligned_cols=102 Identities=12% Similarity=-0.036 Sum_probs=81.8
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 004744 167 GSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFS---INACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTL 243 (732)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 243 (732)
+.+...+..++..+.+.|++++|+..|+++.+..+. + ...|..+...+.+.|++++|...++++++.. +.+...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 456788888999999999999999999999887543 2 6778888888888888888888888887764 5567777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004744 244 NIMVNALCKDHKIDSAKMFLCEMEQKG 270 (732)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~~~~~g 270 (732)
..+..++...|++++|...|++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 777888888888888888888877763
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.25 E-value=1.9e-06 Score=91.26 Aligned_cols=123 Identities=7% Similarity=-0.078 Sum_probs=98.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004744 174 DLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKD 253 (732)
Q Consensus 174 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (732)
..++..|.+.|++++|++.|+++++..+. +..+|..+..++.+.|++++|.+.|+++++.. +.+..++..+..+|.+.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33455677889999999999999988665 78899999999999999999999999999875 66788899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 004744 254 HKIDSAKMFLCEMEQKGVYPDTVTYNTLINA--YCREGFLEEAFQLMN 299 (732)
Q Consensus 254 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 299 (732)
|++++|.+.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999998887432 44556666555 788899999999988
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.24 E-value=1e-05 Score=85.20 Aligned_cols=122 Identities=11% Similarity=-0.006 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 554 NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPT---------------LVSCNTIIKGYCRSGDASKADEFLSKMVS 618 (732)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (732)
....+..+...|.+.|++++|+..|++.++.. +.+ ...|..+..+|.+.|++++|+..++++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34456666667777777777777777766542 112 23444444444444444444444444444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 004744 619 EGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDS 679 (732)
Q Consensus 619 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 679 (732)
.. +.+...|..+..+|...|++++|+..|+++.+ +.|+ ...+..+..++.+.|+.++|
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHH
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 32 11334444444444444444444444444444 2332 22344444444444444443
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.20 E-value=1.4e-05 Score=84.13 Aligned_cols=124 Identities=12% Similarity=-0.080 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFS--------------INACNSLLGGLVKIGWVDLAREVYAEVVRSG 235 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 235 (732)
...|..++..|.+.|++++|+..|+++++..+... ..+|..+..++.+.|++++|+..|+++++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45667777778888888888888887776543321 4555566666666666666666666665543
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004744 236 IELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAF 295 (732)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 295 (732)
+.+..++..+..+|...|++++|+..|+++.+.... +..++..+...+.+.|+.++|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666666666666665555322 3345555555555555555444
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=6.7e-05 Score=78.60 Aligned_cols=197 Identities=11% Similarity=0.006 Sum_probs=145.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC
Q 004744 457 LNGLCRAKMLTEADDLFNEMLERGVFPD----------------FYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIK-PD 519 (732)
Q Consensus 457 i~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 519 (732)
...+.+.|++++|++.|..+.+...... ..++..+...|...|++++|.+.+..+...... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999999998754321 124778899999999999999999987653111 12
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC-
Q 004744 520 IV----TYNTLIDGFCKVGEMEKANKLWADMISR----KISP-NYISYGILINGYCSMGHVTEAFRLWYEMVGK--GIK- 587 (732)
Q Consensus 520 ~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~- 587 (732)
.. +.+.+...+...|+.++|..++.+.... +..+ -..++..+...|...|++++|..++++.... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 2223333445678999999999887642 2222 2457788999999999999999999988753 111
Q ss_pred -C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 588 -P-TLVSCNTIIKGYCRSGDASKADEFLSKMVSE--GVD-P-D--SISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 588 -~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-~-~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
+ ...++..++..|...|++++|..++++.... .+. | . ...+..++..+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2457888899999999999999999988753 111 2 1 34566777788899999999999998876
No 180
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.19 E-value=6.6e-05 Score=80.87 Aligned_cols=175 Identities=8% Similarity=-0.070 Sum_probs=139.7
Q ss_pred cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004744 183 ARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGW----------VDLAREVYAEVVRSGIELNVYTLNIMVNALCK 252 (732)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (732)
...-++|++.++++++.++. +..+|+.-..++.+.|+ ++++.+.++.+++.. +.+..+|+--...+.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34457889999999999887 88889888888888777 899999999999876 7788888888888888
Q ss_pred cC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc------
Q 004744 253 DH--KIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREG-FLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKK------ 323 (732)
Q Consensus 253 ~g--~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~------ 323 (732)
.+ +++++.+.++++.+.... |..+|+.-...+.+.| .++++++.++++++.++. |..+|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 89 669999999999998655 7888988888888888 899999999999988665 888898888777663
Q ss_pred --------CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHh
Q 004744 324 --------GRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMS 362 (732)
Q Consensus 324 --------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 362 (732)
+.++++.+.+.+++... +-|..+|+-+...+.+.++.+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 44577777777777653 445667776666666665533
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.18 E-value=1.1e-05 Score=68.02 Aligned_cols=98 Identities=10% Similarity=0.077 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHH
Q 004744 593 CNTIIKGYCRSGDASKADEFLSKMVSEGVDPDS---ISYNTLINGFVREENMDKAFALVSKMENQGLVPD----VITYNV 665 (732)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~ 665 (732)
+..+...+...|++++|.+.|+++.+.... +. ..+..+..++.+.|++++|...++++.+. .|+ ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHH
Confidence 345667788899999999999998875321 22 47777888889999999999999998884 443 566788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 666 ILTGFCRQGRMHDSELILWRMIEKGLNPDR 695 (732)
Q Consensus 666 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 695 (732)
++.++...|++++|...|+++++ ..|+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~--~~p~~ 109 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVAT--QYPGS 109 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCC
Confidence 88888999999999999999988 55654
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.15 E-value=4.8e-05 Score=63.93 Aligned_cols=95 Identities=15% Similarity=0.012 Sum_probs=67.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 004744 173 FDLVIRTYVQARKLREGSEVFRLLRNKGICFSI---NACNSLLGGLVKIGWVDLAREVYAEVVRSGIELN---VYTLNIM 246 (732)
Q Consensus 173 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 246 (732)
+..++..+.+.|++++|+..|+++.+..+. +. ..+..+..++.+.|++++|...|+++++.. +.+ ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 334566777888888888888888776544 23 466777777788888888888888877654 333 5556667
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 004744 247 VNALCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~~~~~ 269 (732)
..++.+.|++++|...|+++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777777765
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=3.2e-05 Score=66.43 Aligned_cols=97 Identities=10% Similarity=-0.111 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCcc------CH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHc----
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICF------SI-----NACNSLLGGLVKIGWVDLAREVYAEVVRS---- 234 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---- 234 (732)
...+...+..+.+.|++++|+..|+++++..+.. +. .+|+.+..++.+.|++++|+..|+++++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3456677888899999999999999998875441 22 27777777777777777777777777654
Q ss_pred ---CCCCCHHHH----HHHHHHHHhcCChhHHHHHHHHHH
Q 004744 235 ---GIELNVYTL----NIMVNALCKDHKIDSAKMFLCEME 267 (732)
Q Consensus 235 ---~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~ 267 (732)
. |.+...| .....++...|++++|+..|++..
T Consensus 91 ~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 91 GELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 2233344 444444444444444444444443
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=1.7e-05 Score=69.78 Aligned_cols=132 Identities=14% Similarity=0.081 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 004744 557 SYGILINGYCSMGHVTEAFRLWYEMVGKGIK-PT----LVSCNTIIKGYCRSGDASKADEFLSKMVSEGV-DPD----SI 626 (732)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~ 626 (732)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555555666666666666555432100 11 13556666677777777777777777654210 011 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 627 SYNTLINGFVREENMDKAFALVSKMENQ----GLVP-DVITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 627 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
.+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777778888888888888877651 1111 134567778888888999999988888876
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.11 E-value=2.3e-06 Score=90.66 Aligned_cols=124 Identities=10% Similarity=-0.001 Sum_probs=101.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004744 121 LSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKG 200 (732)
Q Consensus 121 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 200 (732)
|..+...+.+.|++++|...+.++++. .+.+..+|..++.+|.+.|++++|+..|+++.+..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 70 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIEL------------------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD 70 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh------------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 334455667899999999999999854 34568899999999999999999999999999987
Q ss_pred CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 004744 201 ICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA--LCKDHKIDSAKMFLC 264 (732)
Q Consensus 201 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 264 (732)
+. +..+|..+..+|.+.|++++|.+.|+++++.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 71 p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 71 KK-YIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66 78999999999999999999999999999875 4455566666666 888899999999988
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.09 E-value=9.6e-06 Score=67.11 Aligned_cols=88 Identities=8% Similarity=-0.085 Sum_probs=50.9
Q ss_pred CCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHH
Q 004744 131 GRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNS 210 (732)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (732)
.|++++|...|.+++.... ..+.++.+|..++..|.+.|++++|+..|+++++..+. +...+..
T Consensus 3 ~g~~~~A~~~~~~al~~~~---------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 66 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL---------------QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVF 66 (117)
T ss_dssp ----CCCHHHHHHHHSSCC---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC---------------CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 4566666666666653110 01233556666666666666666776666666666554 5666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 004744 211 LLGGLVKIGWVDLAREVYAEVVRS 234 (732)
Q Consensus 211 ll~~~~~~g~~~~a~~~~~~~~~~ 234 (732)
+..++.+.|++++|.+.|+++++.
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666666554
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.09 E-value=3.7e-05 Score=67.86 Aligned_cols=99 Identities=17% Similarity=0.090 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHC--------CC---------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNK--------GI---------CFSINACNSLLGGLVKIGWVDLAREVYAEVV 232 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~---------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 232 (732)
...+...+..|.+.|++++|+..|.+.++. .+ ..+...|..+..++.+.|++++|+..++.++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777889999999999999999998875 11 0123456666666666677777777666666
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004744 233 RSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 269 (732)
+.+ +.+..+|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 654 455566666666666666666666666666655
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.09 E-value=2.7e-05 Score=79.20 Aligned_cols=139 Identities=7% Similarity=-0.104 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA 249 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (732)
...+..++..|.+.|++++|+..|+++++.-.. . . ..... .+..+. .+.+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--~---~-------~~~~~-------~~~~~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--S---R-------AAAED-------ADGAKL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--H---H-------HHSCH-------HHHGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--C---c-------cccCh-------HHHHHH-HHHHHHHHHHHHHH
Confidence 345677788888999999999999888762000 0 0 00000 000000 01223344444555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 004744 250 LCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRA 329 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 329 (732)
|.+.|++++|+..+++.++.... +..+|..+..+|.+.|++++|++.|+++.+.... +...+..+...+.+.++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544321 3444555555555555555555555555443221 344444444444444444444
Q ss_pred H
Q 004744 330 K 330 (732)
Q Consensus 330 ~ 330 (732)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.08 E-value=0.00011 Score=79.19 Aligned_cols=177 Identities=7% Similarity=-0.050 Sum_probs=147.6
Q ss_pred hCCCh-HHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCC----------hHHHHHHHHHHHH
Q 004744 130 RGRRI-SDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARK----------LREGSEVFRLLRN 198 (732)
Q Consensus 130 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~ 198 (732)
+.|.+ ++|...+.+++.. .+.+..+|+--...+.+.|+ +++|++.++.+.+
T Consensus 40 ~~~~~~eeal~~~~~~l~~------------------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~ 101 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA------------------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR 101 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH------------------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH
Confidence 34444 6789999999854 45567788877777777777 9999999999999
Q ss_pred CCCccCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCH
Q 004744 199 KGICFSINACNSLLGGLVKIG--WVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDH-KIDSAKMFLCEMEQKGVYPDT 275 (732)
Q Consensus 199 ~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~ 275 (732)
.+++ +..+|+.-..++.+.| +++++++.++.+++.+ +.+..+|+--...+.+.| .++++.+.++++.+..+. |.
T Consensus 102 ~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~ 178 (567)
T 1dce_A 102 VNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NY 178 (567)
T ss_dssp HCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CH
T ss_pred hCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-Cc
Confidence 9888 8999999999999999 6799999999999986 778899998888888889 899999999999988665 88
Q ss_pred HHHHHHHHHHHHc--------------CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004744 276 VTYNTLINAYCRE--------------GFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDR 328 (732)
Q Consensus 276 ~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 328 (732)
.+|+.....+.+. +.++++++.++.+....+. |..+|+.+...+.+.++.++
T Consensus 179 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 8899888877763 5679999999999886544 78889988888877777554
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.08 E-value=6.5e-06 Score=82.90 Aligned_cols=150 Identities=7% Similarity=-0.032 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004744 555 YISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLING 634 (732)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 634 (732)
...+..+...+.+.|++++|+..|++.+.. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455667777777888888888888887765 333321 122333333332221 1367788889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHhcCCH
Q 004744 635 FVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLING-HVSQNNL 711 (732)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~-~~~~g~~ 711 (732)
|.+.|++++|+..++++++ +.| +...|..++.+|...|++++|...|+++++ +.|+ ...+..+..+ ....+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 445 567888999999999999999999999988 6774 4666666666 3445778
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 004744 712 KEAFRFHDEMLQRGFVPD 729 (732)
Q Consensus 712 ~~A~~~~~~m~~~g~~pd 729 (732)
+++.+.+++|+ +..|+
T Consensus 316 ~~a~~~~~~~l--~~~p~ 331 (338)
T 2if4_A 316 QKQKEMYKGIF--KGKDE 331 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHhh--CCCCC
Confidence 88888999887 44444
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.07 E-value=2.5e-05 Score=68.97 Aligned_cols=114 Identities=12% Similarity=0.003 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHhcC-------CChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHH
Q 004744 118 SMSLSAMIHFLVRGRRISDAQALILRMVRKSG-------VSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGS 190 (732)
Q Consensus 118 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 190 (732)
...+......+.+.|++++|...|.+++.... ...... .. ..+.+..+|..+..+|.+.|++++|+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-VE------LDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-HH------HHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-HH------HHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45677888899999999999999999986410 000000 00 01234678999999999999999999
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 004744 191 EVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNV 240 (732)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 240 (732)
..++++++..+. +..+|..+..++...|++++|...|+.+++.. |.+.
T Consensus 84 ~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-p~~~ 131 (162)
T 3rkv_A 84 ETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH-PAAA 131 (162)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGH
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CCCH
Confidence 999999998766 88999999999999999999999999999874 3344
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=3.7e-05 Score=78.21 Aligned_cols=139 Identities=8% Similarity=-0.109 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004744 118 SMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLR 197 (732)
Q Consensus 118 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 197 (732)
...|..+...+.+.|++++|...|.++++.....+... .........+.+..+|..+..+|.+.|++++|+..+++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~--~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA--EDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS--CHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCcccc--ChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 35678889999999999999999999985211000000 0000000112335667777777777777777777777777
Q ss_pred HCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 004744 198 NKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAK 260 (732)
Q Consensus 198 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (732)
+..+. +..+|..+..+|.+.|++++|.+.|+++++.. +.+...+..+...+.+.++.+++.
T Consensus 301 ~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 301 EIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 76554 66677777777777777777777777776653 445555555555555555555443
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.02 E-value=1.3e-05 Score=66.33 Aligned_cols=87 Identities=10% Similarity=-0.037 Sum_probs=61.5
Q ss_pred HcCChHHHHHHHHHHHHCCC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 004744 182 QARKLREGSEVFRLLRNKGI--CFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSA 259 (732)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (732)
..|++++|+..|+++++.++ ..+..++..+..++.+.|++++|...|+++++.. |.+..++..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35778888888888887641 2245677777788888888888888888887764 55667777777788888888888
Q ss_pred HHHHHHHHhC
Q 004744 260 KMFLCEMEQK 269 (732)
Q Consensus 260 ~~~~~~~~~~ 269 (732)
...+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888777665
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.00 E-value=0.0002 Score=61.05 Aligned_cols=109 Identities=10% Similarity=-0.034 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004744 570 HVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVR----EENMDKAF 645 (732)
Q Consensus 570 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 645 (732)
++++|++.|++..+.| .++.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555555555555554 22222 4444444445555555555555532 34444455555544 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 004744 646 ALVSKMENQGLVPDVITYNVILTGFCR----QGRMHDSELILWRMIEK 689 (732)
Q Consensus 646 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 689 (732)
++|++..+.| ++..+..|...|.. .++.++|..+|+++.+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555555532 34444445555544 45555555555555553
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.90 E-value=2.8e-05 Score=78.17 Aligned_cols=149 Identities=10% Similarity=-0.086 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNA 249 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (732)
...+..++..|.+.|++++|+..|+++++..+ +... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 45577778888888889999998888877532 2211 112222333322211 1256667777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH-HHhcCChhH
Q 004744 250 LCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLING-LCKKGRCDR 328 (732)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~ 328 (732)
|.+.|++++|+..+++.++.... +..+|..+..+|...|++++|.+.|++..+.... +...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887776432 5677777888888888888888888887765322 44455555544 334566677
Q ss_pred HHHHHHHHHHC
Q 004744 329 AKEVLDEMLQM 339 (732)
Q Consensus 329 A~~~~~~~~~~ 339 (732)
+...|.+|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77777777654
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.87 E-value=0.00034 Score=59.59 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004744 605 DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCR----QGRMHDSE 680 (732)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~ 680 (732)
++++|.+.|++..+.| .++.. |...|...+.+++|++.|++..+.| +...+..|...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666676666655 22322 5555555566666777777766643 45556666666665 56677777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 004744 681 LILWRMIEKGLNPDRSTYTTLINGHVS----QNNLKEAFRFHDEMLQRGF 726 (732)
Q Consensus 681 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 726 (732)
.+|+++.+.| +...+..|...|.. .++.++|.+++++..+.|.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777766643 45566666666666 6667777777776666553
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.87 E-value=1.2e-05 Score=65.48 Aligned_cols=93 Identities=9% Similarity=0.036 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------H
Q 004744 624 DSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-------R 695 (732)
Q Consensus 624 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~ 695 (732)
+...+..+...+...|++++|++.++++.+. .| +...|..++.++...|++++|...++++++ +.|+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHH
Confidence 4456777778888888888888888888873 44 567788888888888888888888888887 6664 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004744 696 STYTTLINGHVSQNNLKEAFRFHDE 720 (732)
Q Consensus 696 ~~~~~l~~~~~~~g~~~~A~~~~~~ 720 (732)
..+..++.++...|+.++|.+.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 5677777777777777776655443
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=0.00021 Score=74.94 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=40.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 004744 564 GYCSMGHVTEAFRLWYEMVGK---GIKP----TLVSCNTIIKGYCRSGDASKADEFLSKMVSE-----GV-DPD-SISYN 629 (732)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~ 629 (732)
.+..+|++++|+.++++.++. -+.+ -..+++.++.+|...|++++|+.++++.++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344556666666555554432 0111 1234555555555555555555555554431 10 111 23344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 004744 630 TLINGFVREENMDKAFALVSKME 652 (732)
Q Consensus 630 ~li~~~~~~g~~~~A~~~~~~~~ 652 (732)
.|...|...|++++|..+++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555555555444
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.77 E-value=5.8e-05 Score=64.62 Aligned_cols=96 Identities=7% Similarity=0.010 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 004744 604 GDASKADEFLSKMVSEGVDPDSISYNTLINGFVREEN----------MDKAFALVSKMENQGLVPD-VITYNVILTGFCR 672 (732)
Q Consensus 604 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~ 672 (732)
+.+++|++.+++.++.. +.+...|..+..++...++ +++|+..|+++++ +.|+ ...|..++.+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHH
Confidence 34455555555555432 1234444444444444443 4578888888877 5553 4577778888776
Q ss_pred c-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004744 673 Q-----------GRMHDSELILWRMIEKGLNPDRSTYTTLING 704 (732)
Q Consensus 673 ~-----------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 704 (732)
. |++++|...|+++++ +.|+...|..-+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 6 478899999999988 88877666555443
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.74 E-value=0.0001 Score=77.41 Aligned_cols=127 Identities=13% Similarity=0.013 Sum_probs=84.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC-CHHH
Q 004744 527 IDGFCKVGEMEKANKLWADMISR---KISP----NYISYGILINGYCSMGHVTEAFRLWYEMVGK-----G-IKP-TLVS 592 (732)
Q Consensus 527 i~~~~~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~~ 592 (732)
+..+...|++++|+.++++.++. -+.+ -..+++.|...|...|++++|..++++.++. | -.| ...+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 45567789999999999887753 1111 2346788888999999999999999887642 2 112 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 593 CNTIIKGYCRSGDASKADEFLSKMVSE-----GVD-PD-SISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
++.|...|...|++++|+.++++.++. |.. |+ ..+.+.+..++...+.+++|..++.++.+
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999887642 311 11 22233444455555555666666555554
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.74 E-value=0.00031 Score=54.39 Aligned_cols=82 Identities=18% Similarity=0.071 Sum_probs=56.7
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 169 NSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVN 248 (732)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (732)
+...+..+...|.+.|++++|+..|++..+..+. +...+..+..++.+.|++++|...|+++++.. +.+..++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3556777777778888888888888877776544 56677777777777777777777777777654 445555555555
Q ss_pred HHHh
Q 004744 249 ALCK 252 (732)
Q Consensus 249 ~~~~ 252 (732)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00015 Score=58.74 Aligned_cols=92 Identities=10% Similarity=-0.075 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC------HHHH
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELN------VYTL 243 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~ 243 (732)
...|..++..+.+.|++++|+..|+++++..+. +...|..+..++.+.|++++|.+.|+++++.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 455666777777777777777777777776554 66777777777777777777777777777653 222 3444
Q ss_pred HHHHHHHHhcCChhHHHHHH
Q 004744 244 NIMVNALCKDHKIDSAKMFL 263 (732)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~ 263 (732)
..+..++...|+++.|...+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 45555555555555554433
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.70 E-value=0.00019 Score=58.86 Aligned_cols=80 Identities=9% Similarity=-0.095 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004744 188 EGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEME 267 (732)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 267 (732)
+|+..|+++.+..+. +...+..+...+.+.|++++|...|+++++.. +.+..++..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466667776666554 56677777777777777777777777776654 4455666666777777777777777777665
Q ss_pred hC
Q 004744 268 QK 269 (732)
Q Consensus 268 ~~ 269 (732)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.68 E-value=9.7e-05 Score=63.25 Aligned_cols=87 Identities=10% Similarity=-0.021 Sum_probs=63.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004744 181 VQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWV----------DLAREVYAEVVRSGIELNVYTLNIMVNAL 250 (732)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (732)
.+.+.+++|+..|+...+.++. +...|..+..++.+.+++ ++|+..|+++++.+ |.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 4556788999999999888777 888888888888887765 47777777777765 55666777777777
Q ss_pred HhcC-----------ChhHHHHHHHHHHhC
Q 004744 251 CKDH-----------KIDSAKMFLCEMEQK 269 (732)
Q Consensus 251 ~~~g-----------~~~~A~~~~~~~~~~ 269 (732)
...| ++++|.+.|++.++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 7654 566666666666655
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.67 E-value=0.00023 Score=58.28 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004744 607 SKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWR 685 (732)
Q Consensus 607 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 685 (732)
++|++.|++.++.. +.+...+..+...|...|++++|+..++++.+. .| +...|..++.++...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35788888888753 336778888999999999999999999999884 44 567888899999999999999999999
Q ss_pred HHH
Q 004744 686 MIE 688 (732)
Q Consensus 686 ~~~ 688 (732)
+++
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.00041 Score=53.66 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 004744 625 SISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLIN 703 (732)
Q Consensus 625 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 703 (732)
...+..+...+...|++++|+..+++..+.. +.+...|..++.++...|++++|...++++.+ +.| +...+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCHHHHHHHHH
Confidence 4456667777777888888888888877632 22556777777888888888888888888877 555 4566777776
Q ss_pred HHHhcC
Q 004744 704 GHVSQN 709 (732)
Q Consensus 704 ~~~~~g 709 (732)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 665543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.50 E-value=0.00042 Score=55.04 Aligned_cols=67 Identities=10% Similarity=0.055 Sum_probs=57.6
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 004744 167 GSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRS 234 (732)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 234 (732)
+.++.+|..++..|.+.|++++|+..|+++++.++. +..+|..+..+|.+.|++++|.+.|+++++.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456788889999999999999999999999988766 6778889999999999999999999988753
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.49 E-value=0.00045 Score=54.88 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHH
Q 004744 623 PDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKG-LNPDRSTYTT 700 (732)
Q Consensus 623 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ 700 (732)
.+...+..+...|.+.|++++|+..|+++++. .| +...|..++.+|...|++++|...+++.++.. -.++......
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 35677888889999999999999999999884 45 45688889999999999999999999988721 1224444444
Q ss_pred HHHHHHh
Q 004744 701 LINGHVS 707 (732)
Q Consensus 701 l~~~~~~ 707 (732)
+...+..
T Consensus 83 l~~~l~~ 89 (100)
T 3ma5_A 83 LQDAKLK 89 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.22 E-value=0.004 Score=61.36 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004744 622 DPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYT 699 (732)
Q Consensus 622 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 699 (732)
+.+..+|..+...+...|++++|...+++++.. .|+...|..+...+...|++++|...++++.. +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 456777777777777778888888888888884 47777777777888888888888888888888 777766654
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.16 E-value=0.0014 Score=67.52 Aligned_cols=87 Identities=9% Similarity=-0.039 Sum_probs=50.6
Q ss_pred HcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-HHHHHHH
Q 004744 602 RSGDASKADEFLSKMVSE---GVDPD----SISYNTLINGFVREENMDKAFALVSKMEN-----QG-LVPDV-ITYNVIL 667 (732)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~g-~~p~~-~~~~~l~ 667 (732)
..|++++|+.++++.++. -..|+ ..+++.|...|...|++++|+.+++++.+ .| -.|+. .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 456677777777666542 11122 34566666666666666666666666654 12 12332 3566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004744 668 TGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 668 ~~~~~~g~~~~A~~~~~~~~~ 688 (732)
..|..+|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 666666666666666666665
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.93 E-value=0.0047 Score=63.56 Aligned_cols=87 Identities=13% Similarity=-0.005 Sum_probs=69.5
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHH
Q 004744 567 SMGHVTEAFRLWYEMVGK---GIKPT----LVSCNTIIKGYCRSGDASKADEFLSKMVSE-----GV-DPD-SISYNTLI 632 (732)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~li 632 (732)
..|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|+.+++++++. |. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 458999999999987753 12222 367889999999999999999999998752 31 233 46789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004744 633 NGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~ 653 (732)
..|...|++++|..+++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999887
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.93 E-value=0.0027 Score=65.47 Aligned_cols=92 Identities=8% Similarity=-0.036 Sum_probs=66.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-HH
Q 004744 597 IKGYCRSGDASKADEFLSKMVSE---GVDPD----SISYNTLINGFVREENMDKAFALVSKMEN-----QG-LVPDV-IT 662 (732)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~g-~~p~~-~~ 662 (732)
+..+.+.|++++|++++++.++. -..|+ ..+++.|+..|...|++++|+.++++++. .| ..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566778888888888888753 12222 45677788888888888888888887765 22 23333 46
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 663 YNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 663 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
++.|+..|..+|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77888888888888888888888877
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.90 E-value=0.00077 Score=53.24 Aligned_cols=60 Identities=18% Similarity=0.328 Sum_probs=40.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004744 631 LINGFVREENMDKAFALVSKMENQGLVP-DVI-TYNVILTGFCRQGRMHDSELILWRMIEKGLNPD 694 (732)
Q Consensus 631 li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 694 (732)
.+..+.+.|++++|+..++++.+. .| +.. .|..++.++...|++++|...|+++++ +.|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE--LNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 344566677777777777777763 34 445 667777777777777777777777777 5554
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.86 E-value=0.011 Score=60.88 Aligned_cols=95 Identities=6% Similarity=-0.011 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-
Q 004744 559 GILINGYCSMGHVTEAFRLWYEMVGKG---IKPT----LVSCNTIIKGYCRSGDASKADEFLSKMVSE-----G-VDPD- 624 (732)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~- 624 (732)
...+..+.+.|++++|+.++++.++.. +.|+ ..+++.++.+|...|++++|+.++++++.. | ..|+
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 334555667788888888888877541 2222 356777888888888888888888877642 2 1222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 625 SISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 625 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
..+++.|...|...|++++|..+++++.+
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45677888888888888888888888776
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.84 E-value=0.02 Score=56.38 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 004744 273 PDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYN 349 (732)
Q Consensus 273 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 349 (732)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 356677776666666788888888888877764 56666767777777788888888888777765 45555543
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.79 E-value=0.009 Score=46.26 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 623 PDSISYNTLINGFVREEN---MDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 623 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
.+...+..+..++...++ .++|..+++++.+ ..| +......++..+.+.|++++|+..|+++++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555555543333 4666666666666 344 344555556666666666666666666665
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.75 E-value=0.012 Score=45.97 Aligned_cols=66 Identities=9% Similarity=0.046 Sum_probs=54.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 004744 176 VIRTYVQARKLREGSEVFRLLRNKGICFSIN-ACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTL 243 (732)
Q Consensus 176 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 243 (732)
.+..+.+.|++++|+..|+++.+..+. +.. .+..+..++.+.|++++|.+.|+++++.. +.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 466788899999999999999887655 677 88999999999999999999999998875 3344443
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.75 E-value=0.0061 Score=51.51 Aligned_cols=87 Identities=13% Similarity=0.136 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 004744 605 DASKADEFLSKMVSEGVDPDSISYNTLINGFVREE---NMDKAFALVSKMENQGLVP--DVITYNVILTGFCRQGRMHDS 679 (732)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 679 (732)
....+++.|.+....+. ++..+.-.+..++++.+ ++++++.++++..+.. .| +...+..+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45677788887777654 67888888888999988 6679999999998853 25 345666778888999999999
Q ss_pred HHHHHHHHHcCCCCCH
Q 004744 680 ELILWRMIEKGLNPDR 695 (732)
Q Consensus 680 ~~~~~~~~~~g~~p~~ 695 (732)
.++++.+++ ++|+.
T Consensus 91 ~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHh--cCCCC
Confidence 999999999 88854
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.65 E-value=0.29 Score=46.17 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc-C
Q 004744 606 ASKADEFLSKMVSEGVDPD---SISYNTLINGFVRE-----ENMDKAFALVSKMENQGLVPD--VITYNVILTGFCRQ-G 674 (732)
Q Consensus 606 ~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~-g 674 (732)
..+|...+++.++. .|+ ...|..|+..|.+. |+.++|.++|++.++ +.|+ ..++......++.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 56778888888773 566 56788888888884 899999999999998 5663 66777788888874 8
Q ss_pred CHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 675 RMHDSELILWRMIEKGLN--PDRSTYTTLINGHVSQNNLKEAFRFHDEML 722 (732)
Q Consensus 675 ~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 722 (732)
+.++|.+++++.+..... |+....+ .+.-++|..+++++-
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan--------~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLV--------ILSQKRARWLKAHVQ 296 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHH--------HHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHH--------HHHHHHHHHHHHHhH
Confidence 999999999999984443 4332222 233456666666543
No 220
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.63 E-value=7.5e-07 Score=88.68 Aligned_cols=205 Identities=11% Similarity=0.106 Sum_probs=141.8
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMV 247 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 247 (732)
..+.+|..|++++.+.|++.+|++.|-+.. |+..|..++.+..+.|.+++-..++.-+.+. ..++..=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHH
Confidence 457899999999999999999999886543 5667889999999999999999998876654 44556667889
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--------------------CC
Q 004744 248 NALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKG--------------------LK 307 (732)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------~~ 307 (732)
-+|.+.+++.+-++++. .||+.-...+.+-|...|.++.|.-+|..+.... -.
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999877544331 3677667788888888898888887777653211 01
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 004744 308 PGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLI 387 (732)
Q Consensus 308 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 387 (732)
-+..||..+-.+|...+.+.-|.-.--.++- .+|. ...++..|-..|.+++-+.+++.-.... ......++-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 2456677777777777776666555444442 1221 1234555667777777777776665321 23556666666
Q ss_pred HHHHhC
Q 004744 388 GIFSRN 393 (732)
Q Consensus 388 ~~~~~~ 393 (732)
-.|++-
T Consensus 271 ILYsKY 276 (624)
T 3lvg_A 271 ILYSKF 276 (624)
T ss_dssp HHHHSS
T ss_pred HHHHhc
Confidence 666654
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.57 E-value=0.013 Score=49.46 Aligned_cols=87 Identities=16% Similarity=0.105 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 004744 570 HVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSG---DASKADEFLSKMVSEGVDP--DSISYNTLINGFVREENMDKA 644 (732)
Q Consensus 570 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 644 (732)
....+.+.|.+....+ +++..+...+..++++.+ ++++++.++++..+.. .| +...+-.|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3556667777766665 467777777888888877 5668888888887753 23 345555666777888888888
Q ss_pred HHHHHHHHHCCCCCCH
Q 004744 645 FALVSKMENQGLVPDV 660 (732)
Q Consensus 645 ~~~~~~~~~~g~~p~~ 660 (732)
.++++.+.+ ++|+.
T Consensus 91 ~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHh--cCCCC
Confidence 888888887 56643
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.33 E-value=0.026 Score=43.63 Aligned_cols=68 Identities=10% Similarity=-0.069 Sum_probs=42.3
Q ss_pred CCchHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 004744 167 GSNSLIFDLVIRTYVQARK---LREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSG 235 (732)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 235 (732)
+.++..+..+..++...+. .++|...|+++++..+. ++.+...+...+.+.|++++|+..|+.+++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455566666666554433 56677777776666555 56666666666666666666666666666543
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.30 E-value=0.019 Score=54.20 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhc-C
Q 004744 641 MDKAFALVSKMENQGLVPD---VITYNVILTGFCRQ-----GRMHDSELILWRMIEKGLNPD--RSTYTTLINGHVSQ-N 709 (732)
Q Consensus 641 ~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~-g 709 (732)
..+|...++++++ +.|+ ...|..++..|.+. |+.++|.++|+++++ +.|+ ..++...++.++.. |
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 5788888999998 7887 46888899888884 999999999999999 8883 78888899999885 9
Q ss_pred CHHHHHHHHHHHHHCCCC
Q 004744 710 NLKEAFRFHDEMLQRGFV 727 (732)
Q Consensus 710 ~~~~A~~~~~~m~~~g~~ 727 (732)
+.++|.+.+++.++....
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 999999999999987665
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.20 E-value=0.14 Score=58.08 Aligned_cols=128 Identities=11% Similarity=0.049 Sum_probs=74.1
Q ss_pred HHHHHcCChHHHHH-HHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004744 178 RTYVQARKLREGSE-VFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKI 256 (732)
Q Consensus 178 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (732)
......+++++|.+ ++..+. +......++..+.+.|..++|.++.+... .- .......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~~----f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD--------QK----FELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH--------HH----HHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc--------hh----eehhhhcCCH
Confidence 33445677777766 442111 12233666677777777777776553211 11 2234556788
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004744 257 DSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEM 336 (732)
Q Consensus 257 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 336 (732)
++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...|...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 8777765432 2567778888888888888888887776643 344445555566555555444444
Q ss_pred HH
Q 004744 337 LQ 338 (732)
Q Consensus 337 ~~ 338 (732)
..
T Consensus 734 ~~ 735 (814)
T 3mkq_A 734 ET 735 (814)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.45 Score=41.23 Aligned_cols=98 Identities=13% Similarity=0.193 Sum_probs=44.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004744 567 SMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFA 646 (732)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 646 (732)
+.|+++.|.++.+++ .+...|..+.......|+++-|++.|.+... +..+.-.|.-.|+.+.-.+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 445555555554443 1444555555555555555555555554321 2223333444455544444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004744 647 LVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWR 685 (732)
Q Consensus 647 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 685 (732)
+-+.....| + ++.-...+...|+++++.++|.+
T Consensus 82 la~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 444443322 1 22222333345555555555533
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.92 E-value=0.033 Score=44.20 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 624 DSISYNTLINGFVREENMDKAFALVSKMENQG------LVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR 695 (732)
Q Consensus 624 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 695 (732)
+..-+..|+..+.+.|+++.|...++++.+.- -.+...++..++.++.+.|++++|..+++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 44556678889999999999999999987731 123456889999999999999999999999998 78854
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.83 E-value=0.23 Score=56.29 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004744 174 DLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKD 253 (732)
Q Consensus 174 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (732)
..+++.+.+.|..++|+++.+... .-.....+.|++++|.++.+. ..+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHc
Confidence 344455555666666655442110 002223445666666655432 23455666666666666
Q ss_pred CChhHHHHHHHHHH
Q 004744 254 HKIDSAKMFLCEME 267 (732)
Q Consensus 254 g~~~~A~~~~~~~~ 267 (732)
|+++.|+++|.++.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 66666666666543
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.78 E-value=0.082 Score=41.81 Aligned_cols=66 Identities=12% Similarity=0.026 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004744 204 SINACNSLLGGLVKIGWVDLAREVYAEVVRSG------IELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQK 269 (732)
Q Consensus 204 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 269 (732)
+..-|-.|...+.+.|++..|..+|+.+++.- -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455566666666666666666666655421 1223344555555555555555555555555544
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.92 Score=39.28 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=22.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004744 252 KDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSM 301 (732)
Q Consensus 252 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 301 (732)
..|+++.|.++.+.+. +...|..|.....+.|+++-|.+.|...
T Consensus 17 ~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3455555555544431 4445555555555555555555555543
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.29 E-value=0.56 Score=38.03 Aligned_cols=138 Identities=17% Similarity=0.082 Sum_probs=76.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004744 567 SMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFA 646 (732)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 646 (732)
-.|.+++..++..+..... +..-+|.++--....-+-+-..+.++.+-+. -| ...+|++.....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHH
Confidence 3577777777777766542 4444555554444444555555555544321 11 112333333333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004744 647 LVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQRGF 726 (732)
Q Consensus 647 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 726 (732)
.+-.+- .+....+.-++.+..+|+-++-.+++..++. +.+|++.....+..+|.+.|+..+|.++++++-++|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 332221 2333344555666667777777676666432 2556667777777777777777777777777777665
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.16 E-value=0.36 Score=40.16 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCCCCHH-HHHHHHHH------HHhcCChhHHHHHHHHHHhCC
Q 004744 204 SINACNSLLGGLVKIGWV------DLAREVYAEVVRSGIELNVY-TLNIMVNA------LCKDHKIDSAKMFLCEMEQKG 270 (732)
Q Consensus 204 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~~~g 270 (732)
|..+|-..+..+-+.|+. +..+++|++++.. +||+.. .|...+.. +...++.++|+++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455565555555555665 5666666666653 344321 11111111 123366777777777775542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 004744 271 VYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKP 308 (732)
Q Consensus 271 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 308 (732)
-.- ...|......-.+.|++..|.+++...+..+.+|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 222 5566666666667777777777777777665553
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.10 E-value=0.25 Score=41.05 Aligned_cols=108 Identities=10% Similarity=-0.014 Sum_probs=77.9
Q ss_pred CCCchHHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCccCH-HHHHHHHH------HHHHcCChHHHHHHHHHHH
Q 004744 166 CGSNSLIFDLVIRTYVQARKL------REGSEVFRLLRNKGICFSI-NACNSLLG------GLVKIGWVDLAREVYAEVV 232 (732)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~-~~~~~ll~------~~~~~g~~~~a~~~~~~~~ 232 (732)
.+.|+.+|-..+...-+.|+. ++.+++|+++...- +|+. ..|...+. .+...++.++|+++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345677777777777777887 88888898887643 2221 11111111 1234489999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004744 233 RSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDT 275 (732)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 275 (732)
+.. ..-...|......=.++|++..|++++.+....+.+|..
T Consensus 88 ~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 88 ANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 763 444888888889999999999999999999999877543
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.07 E-value=3.1e-05 Score=77.37 Aligned_cols=246 Identities=12% Similarity=0.107 Sum_probs=152.3
Q ss_pred ChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhcCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004744 117 SSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRLEIVDSFVSTYSPCGSNSLIFDLVIRTYVQARKLREGSEVFRLL 196 (732)
Q Consensus 117 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 196 (732)
.+..|+.+..+..+.++..+|++.|-++ .|+..|..+|....+.|.+++-+..+.-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----------------------~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----------------------DDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----------------------SCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----------------------CChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5678999999999999888887654322 23444555666666677777666666655
Q ss_pred HHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC------
Q 004744 197 RNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKG------ 270 (732)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g------ 270 (732)
++..- ++..=+.|+-+|++.++..+-.++.. .||..-...+.+-|...|.++.|.-+|..+....
T Consensus 110 Rk~~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstL 180 (624)
T 3lvg_A 110 RKKAR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTL 180 (624)
T ss_dssp STTCC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSS
T ss_pred HHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHH
Confidence 44321 33344566667777766655443322 3455445555666666666666665554432211
Q ss_pred --------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004744 271 --------------VYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEM 336 (732)
Q Consensus 271 --------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 336 (732)
-..++.||..+-.+|...+++.-|.-.--.++-. ..-...++..|-..|.+++-+.+++..
T Consensus 181 V~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 181 VHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp SSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 0236778999999999999988776554444321 122334667788999999999999988
Q ss_pred HHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHh-CCCCC------CHhHHHHHHHHHHhCCCHHHHHH
Q 004744 337 LQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSR-RGVAP------DIVSFSTLIGIFSRNGQLDRALM 401 (732)
Q Consensus 337 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g~~~------~~~~~~~l~~~~~~~g~~~~A~~ 401 (732)
+... ....-.++.|.-.|++-. .++-.+.++..-. .+++. ....|.-++-.|++-.+++.|..
T Consensus 256 lglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 256 LGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7432 356678888888888763 4544444433221 12211 23457777777777777776643
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.86 E-value=0.13 Score=41.72 Aligned_cols=86 Identities=13% Similarity=0.109 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 004744 605 DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDK---AFALVSKMENQGLVP--DVITYNVILTGFCRQGRMHDS 679 (732)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 679 (732)
.+..+.+-|.+....|. ++..+--.+.+++++..+..+ ++.+++.....+ .| .......|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555655554443 566666667777777776555 777777777642 23 223444566678888888888
Q ss_pred HHHHHHHHHcCCCCC
Q 004744 680 ELILWRMIEKGLNPD 694 (732)
Q Consensus 680 ~~~~~~~~~~g~~p~ 694 (732)
.++++.+++ ++|+
T Consensus 94 ~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHH--HCTT
T ss_pred HHHHHHHHH--hCCC
Confidence 888888888 7774
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.86 E-value=1.3 Score=35.99 Aligned_cols=140 Identities=11% Similarity=0.067 Sum_probs=90.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 004744 180 YVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHKIDSA 259 (732)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (732)
..-.|.+++..++..+..... +..-+|-++.-....-+-+-..++++.+-+. -|. ..+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 445688888888888887653 6677777777777766777667766655331 111 233444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004744 260 KMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQM 339 (732)
Q Consensus 260 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 339 (732)
...+-.+-. +..-....++.....|.-++-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 444433321 333445556667778888888888777544 34567777777888888888888888888887777
Q ss_pred CC
Q 004744 340 GL 341 (732)
Q Consensus 340 g~ 341 (732)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 74
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.80 E-value=6.6 Score=43.93 Aligned_cols=266 Identities=12% Similarity=0.094 Sum_probs=123.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-------CcCHHHHHHHHHH
Q 004744 389 IFSRNGQLDRALMYFREMKSAGLVPDNV--LYTIIINGYCRNGFVLEALKMRDEMLEKGC-------VMDVVTYNTILNG 459 (732)
Q Consensus 389 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~li~~ 459 (732)
+....|+.++++.++......+-..+.. .-..+.-+....|..+++..++...+...- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3455666667766666544321011222 222333344555555566666666554311 0111122233333
Q ss_pred HHhcCC-HHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004744 460 LCRAKM-LTEADDLFNEMLERGVFPDFYTFT--TLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEM 536 (732)
Q Consensus 460 ~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 536 (732)
+.-.|. -+++.+.+..+....- +...... +|...+.-.|+-+....++..+.+.. .-+..-...+.-++...|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 333332 2355555555554321 0111112 22333445667666666766665532 11222222223334456777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004744 537 EKANKLWADMISRKISPNYISYG---ILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFL 613 (732)
Q Consensus 537 ~~A~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (732)
+.+..+.+.+... ..|. .-|. ++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.+++
T Consensus 541 e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 7777777766653 1112 2222 23345667777666666777766542 223332223333344456655566666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHH
Q 004744 614 SKMVSEGVDPDSISYNTLINGFVREENM-DKAFALVSKMENQGLVPDVITY 663 (732)
Q Consensus 614 ~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~ 663 (732)
+.+.+.+ .|....-..+.-+....|.. .+|+..+..+.. .+|..+-
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 5555432 34443333344444444443 567777777764 4555443
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.74 E-value=0.086 Score=42.71 Aligned_cols=87 Identities=18% Similarity=0.170 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHH
Q 004744 639 ENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHD---SELILWRMIEKGLNP--DRSTYTTLINGHVSQNNLKE 713 (732)
Q Consensus 639 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~ 713 (732)
..+..+.+-+.+....| .++..+-..+.+++.+..+..+ ++.+++...+.+ .| .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34455566666665544 4788888889999999887666 999999988742 24 35677888999999999999
Q ss_pred HHHHHHHHHHCCCCCC
Q 004744 714 AFRFHDEMLQRGFVPD 729 (732)
Q Consensus 714 A~~~~~~m~~~g~~pd 729 (732)
|.++++.+++ +.|+
T Consensus 93 A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHH--hCCC
Confidence 9999999984 4554
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.70 E-value=5.2 Score=38.44 Aligned_cols=80 Identities=18% Similarity=0.063 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHhHHH
Q 004744 274 DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKK---GRCDRAKEVLDEMLQMGLSPDTATYNT 350 (732)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~ 350 (732)
|......+...|.+.|++.+|...|-.-. .-+...+..++--+... |...++--++.+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------- 193 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------- 193 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH---------------
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcCCCCcchHHHHHHH---------------
Confidence 66777888888888888888888765211 11344555444444333 433332222211
Q ss_pred HHHHHHcCCCHhHHHHHHHHHH
Q 004744 351 LLVESCRKENMSEAEEIFCEMS 372 (732)
Q Consensus 351 li~~~~~~g~~~~A~~~~~~~~ 372 (732)
.+-.|.-.|++..|..+++...
T Consensus 194 aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 1223445677888877777654
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.55 E-value=0.62 Score=50.93 Aligned_cols=132 Identities=14% Similarity=0.040 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHc------CCCC-CH
Q 004744 170 SLIFDLVIRTYVQARK-LREGSEVFRLLRNKGICFSINACNSLLGGLVKIG-WVDLAREVYAEVVRS------GIEL-NV 240 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~------~~~~-~~ 240 (732)
...-..|++.+...|+ ++.|+.+|+++.+..+..+......++..+.+.+ +--+|.++..+.++. ..++ +.
T Consensus 248 N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 248 NYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp SHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 3455666666666666 5889999999988755433333333444433333 233455555555431 1111 11
Q ss_pred ----------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004744 241 ----------YTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMS 302 (732)
Q Consensus 241 ----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 302 (732)
.....-+..+...|+++-|+++-++.....+. +-.+|..|...|.+.|+++.|+-.++.+.
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12333345677789999999999988877322 56789999999999999999999888875
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.42 E-value=1.4 Score=35.83 Aligned_cols=71 Identities=8% Similarity=0.125 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004744 620 GVDPDSISYNTLINGFVREENM---DKAFALVSKMENQGLVP--DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD 694 (732)
Q Consensus 620 ~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 694 (732)
+-.|+..+--.+.+++++..+. .+++.+++++.+.+ | ....+..|.-++.+.|++++|.++.+.+++ ++|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 3345666655666677766653 45777777777643 4 234555666677778888888888887777 7775
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.24 E-value=1.1 Score=48.90 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=35.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 670 FCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEM 721 (732)
Q Consensus 670 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 721 (732)
|...|+++.|..+.++++. ..|+ ..+|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4456777777777777776 5663 577777777777777777777766665
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.16 E-value=2.5 Score=34.90 Aligned_cols=73 Identities=7% Similarity=0.074 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004744 621 VDPDSISYNTLINGFVREENM---DKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR 695 (732)
Q Consensus 621 ~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 695 (732)
-.|+..+--.+.+++++..+. .+++.+++.+...+..-.......|.-++.+.|++++|.++.+.+++ ++|+.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 356777777778888887764 56888888888742111234455677788999999999999999999 88854
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.77 E-value=9.9 Score=38.98 Aligned_cols=190 Identities=11% Similarity=0.076 Sum_probs=109.4
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hc
Q 004744 498 DGNMNKALNLFDIMTQK-----SIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYC----SM 568 (732)
Q Consensus 498 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~ 568 (732)
.|+++.|++.+-.+.+. +..........++..|.+.|+++...+.+.-+.+.... -......++..+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 37888888877665542 34445677788889999999999888877666544222 2222333433322 22
Q ss_pred CCHHHHH--HHHHHHHh--CC-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHH
Q 004744 569 GHVTEAF--RLWYEMVG--KG-IKP---TLVSCNTIIKGYCRSGDASKADEFLSKMVSE--GVDPD---SISYNTLINGF 635 (732)
Q Consensus 569 g~~~~A~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~li~~~ 635 (732)
...+... .+.+.... .| +-. .......+...|...|++.+|.+++..+... +..+. ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222211 11111110 11 111 1123345677788888888888888887643 22211 23455566777
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 636 VREENMDKAFALVSKMEN----QGLVPDV--ITYNVILTGFCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 636 ~~~g~~~~A~~~~~~~~~----~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 688 (732)
...+++..|..+++++.. ....|+. ..+...+..+...+++.+|.+.|.++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 788888888888777642 2122222 3455666666777888888877777765
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.39 E-value=1.9 Score=35.11 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004744 587 KPTLVSCNTIIKGYCRSGD---ASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD 659 (732)
Q Consensus 587 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 659 (732)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+.+ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 4555555555556665554 335666666665543111234444555566666666666666666666 4554
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.08 E-value=23 Score=39.69 Aligned_cols=261 Identities=11% Similarity=0.030 Sum_probs=145.2
Q ss_pred HHHHcCCCHhHHHHHHHHHHhCC--CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--C-----CCHHHHHHHHH
Q 004744 353 VESCRKENMSEAEEIFCEMSRRG--VAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGL--V-----PDNVLYTIIIN 423 (732)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~--~-----~~~~~~~~li~ 423 (732)
-+....|+.++++.+++.....+ -.+....-..+.-+....|..+++..++.......- . +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 44567788888888887765421 112233333444555666666678887777654311 0 11111222323
Q ss_pred HHHHcCC-HHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004744 424 GYCRNGF-VLEALKMRDEMLEKGCVMDV--VTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGN 500 (732)
Q Consensus 424 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 500 (732)
+++-.|. -+++.+.+..++..... .. ..--.+...++-.|+.+....++..+.+.. .-+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 3333333 24666767766654211 11 111233344556778887788888776642 1122222333444557899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004744 501 MNKALNLFDIMTQKSIKPDIVTYN--TLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLW 578 (732)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 578 (732)
.+.+..+.+.+... ..|....-. ++.-+|+..|+.....+++..+.+. ...++.....+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 99888888888764 222322222 2334567788988777799888865 2223333333444555567777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 004744 579 YEMVGKGIKPTLVSCNTIIKGYCRSGDA-SKADEFLSKMVS 618 (732)
Q Consensus 579 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 618 (732)
..+.+.+ .|...--..+.-+....|.. .++...+..+..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6666554 44444444444455555553 678888888875
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.03 E-value=4.5 Score=33.36 Aligned_cols=72 Identities=15% Similarity=0.062 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004744 587 KPTLVSCNTIIKGYCRSGD---ASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDV 660 (732)
Q Consensus 587 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 660 (732)
.|+..+--.+..++.+..+ ..+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+.+ ++|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 5666776677777777765 456788888877754322344555667788888888888888888888 56753
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.60 E-value=5.5 Score=46.69 Aligned_cols=124 Identities=13% Similarity=0.060 Sum_probs=68.6
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCcc-----------------------CHHHHHHHHHHHHHcCChH
Q 004744 166 CGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICF-----------------------SINACNSLLGGLVKIGWVD 222 (732)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------------~~~~~~~ll~~~~~~g~~~ 222 (732)
|+.++..--.++++|...|++++|.+.|+++.. |+.. -..-|..++..+-+.|.++
T Consensus 838 ~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~ 916 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYI 916 (1139)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCH
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHH
Confidence 445555556678888889999999988876531 1100 1123455555666666666
Q ss_pred HHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 004744 223 LAREVYAEVVRSGIELNV----YTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLE 292 (732)
Q Consensus 223 ~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 292 (732)
.+.+.-..+++...+.+. ..|..+.+.+...|++++|...+-.+..... -......||...|..|..+
T Consensus 917 ~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 917 DALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 666665555543222221 1355556666666666666666655554422 2334444555555555433
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.32 E-value=18 Score=37.10 Aligned_cols=190 Identities=10% Similarity=0.043 Sum_probs=122.7
Q ss_pred cCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc
Q 004744 463 AKMLTEADDLFNEMLER-----GVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGF----CKV 533 (732)
Q Consensus 463 ~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~ 533 (732)
.|++++|++.+..+.+. +..........++..|...|+++...+.+..+.+.... -......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 37788998888776643 23445677888999999999999998888766654322 222333444333 233
Q ss_pred CCHHHHHH--HHHHHHH--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHH
Q 004744 534 GEMEKANK--LWADMIS--RK-ISP---NYISYGILINGYCSMGHVTEAFRLWYEMVGK--GIKPT---LVSCNTIIKGY 600 (732)
Q Consensus 534 g~~~~A~~--~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 600 (732)
...+.... +.+.... .| .-. .......|...|...|++.+|.+++.++... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33332211 1111111 01 111 1123456888999999999999999998753 32222 24566677889
Q ss_pred HHcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 601 CRSGDASKADEFLSKMVS----EGVDPD--SISYNTLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
...+++.+|..+++++.. ....|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999998753 222222 34567778888899999999888877765
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.27 E-value=16 Score=35.24 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004744 273 PDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLL 352 (732)
Q Consensus 273 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 352 (732)
-|......+...|.+.+++.+|...|- . |-.+....+..++--+...+...++--++ -. .+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfi--------------aR-aV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYC--------------AR-AV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHH--------------HH-HH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHH--------------HH-HH
Confidence 366677778888888888888887773 2 22333356655544444333322222111 11 22
Q ss_pred HHHHcCCCHhHHHHHHHHHH
Q 004744 353 VESCRKENMSEAEEIFCEMS 372 (732)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~ 372 (732)
-.|.-.+++..|..+++...
T Consensus 195 L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 33455677777777665544
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.73 E-value=17 Score=34.80 Aligned_cols=167 Identities=15% Similarity=0.029 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHH
Q 004744 417 LYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDL----FNEMLERGVFPDFYTFTTLI 492 (732)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~li 492 (732)
.|.++..-|.+.+++++|++++..-... +.+.|+...|.++ .+-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~---------------ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGALS---------------FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444555566777777777766543321 4555665555443 33344456666766666666
Q ss_pred HHHHhcCCHH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004744 493 HGHCKDGNMN-KALNLFDIMTQ----KS--IKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGY 565 (732)
Q Consensus 493 ~~~~~~g~~~-~A~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 565 (732)
..+.....-+ .=.++.+.+++ .| ..-++.....+...|.+.|++.+|...|-. +-..+...+..++--+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 6655432111 11222333321 11 223677788888888999999888887631 1111334444433333
Q ss_pred Hhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004744 566 CSM---GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMV 617 (732)
Q Consensus 566 ~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (732)
... |...++- ......++ .|.-.|+...|..+++...
T Consensus 176 ~~~~~~~~~~e~d--------------lf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTVA--------------EFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHHH--------------HHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHH--------------HHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 332 3333321 11111222 3445688888888877664
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.73 E-value=14 Score=43.32 Aligned_cols=153 Identities=12% Similarity=0.060 Sum_probs=102.8
Q ss_pred cChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCChh-------HHHHhhhhhcCCCC
Q 004744 95 DNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMVRKSGVSRL-------EIVDSFVSTYSPCG 167 (732)
Q Consensus 95 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~ 167 (732)
+.++.+..+..|+ ..++.+--.++.++...|++++|...|.++. .+.... .-...+........
T Consensus 826 ~~~~~~~~l~~~~-------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa--~~~~~~~~l~~~~~~~~~~~~~~~~~~ 896 (1139)
T 4fhn_B 826 KQYNACMQLIGWL-------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVLREFQEIAEKYHHQN 896 (1139)
T ss_dssp SCTTHHHHHHHHS-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSCTTCCCSCSSHHHHHHHHHTTTSCC
T ss_pred hhHHHHHHHhhhc-------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh--hhhcccchhhhhhcccccccccccccc
Confidence 4556666666553 3456666788999999999999999998764 222110 01111222222223
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 004744 168 SNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSI----NACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTL 243 (732)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 243 (732)
.-+.-|.-++..+-+.|.++.++++-..+++....-+. ..|..+.+.....|++++|...+-.+.... .-....
T Consensus 897 ~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cL 974 (1139)
T 4fhn_B 897 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCL 974 (1139)
T ss_dssp SSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHH
Confidence 33456788889999999999999998888764322122 268889999999999999999998876543 234456
Q ss_pred HHHHHHHHhcCChhH
Q 004744 244 NIMVNALCKDHKIDS 258 (732)
Q Consensus 244 ~~l~~~~~~~g~~~~ 258 (732)
..++..+|..|..+.
T Consensus 975 r~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 975 LDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHCCHHH
T ss_pred HHHHHHHHhCCChhh
Confidence 667777777665443
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.50 E-value=1.4 Score=44.47 Aligned_cols=73 Identities=11% Similarity=0.097 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 004744 627 SYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIE-----KGLNPDRSTYTT 700 (732)
Q Consensus 627 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~ 700 (732)
....++..+...|+.++|+..+..+.. ..| +...|..++.++.+.|+..+|...|+++.+ .|+.|...+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 445566777788888888888888776 344 666788888888888888888888877653 478887765443
Q ss_pred H
Q 004744 701 L 701 (732)
Q Consensus 701 l 701 (732)
.
T Consensus 251 ~ 251 (388)
T 2ff4_A 251 N 251 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.29 E-value=22 Score=34.36 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004744 624 DSISYNTLINGFVREENMDKAFALV 648 (732)
Q Consensus 624 ~~~~~~~li~~~~~~g~~~~A~~~~ 648 (732)
|+.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4555556666677777777766655
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.17 E-value=3.7 Score=41.31 Aligned_cols=56 Identities=9% Similarity=-0.058 Sum_probs=27.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004744 175 LVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEV 231 (732)
Q Consensus 175 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 231 (732)
.++..+...|++++|+...+.+....+. +...|..++.+|.+.|+..+|++.|++.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555555554444333 4445555555555555555555555544
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.78 E-value=3.2 Score=35.27 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004744 694 DRSTYTTLINGHVSQNNLKEAFRFHDEM 721 (732)
Q Consensus 694 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 721 (732)
+.+.-..+..||.+.|++++|+..++.+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 3455566889999999999999988754
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.28 E-value=3.8 Score=31.28 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 640 NMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLIN 703 (732)
Q Consensus 640 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 703 (732)
+.=+..+-++.+....+-|++.+..+.+.+|.+.+++..|.++|+-...+ ..+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34456666677777778888888888888888888888888888887764 3333456766653
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.03 E-value=44 Score=35.72 Aligned_cols=69 Identities=14% Similarity=-0.016 Sum_probs=48.1
Q ss_pred CCCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHH--HHHHHHHHHH
Q 004744 164 SPCGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDL--AREVYAEVVR 233 (732)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~--a~~~~~~~~~ 233 (732)
...+.+...-.....+....|+..+|....+.+-..|.. ....|..++..+.+.|.... .++-++.+..
T Consensus 96 ~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~ 166 (618)
T 1qsa_A 96 PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMK 166 (618)
T ss_dssp CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 334556677777888888899988888888888776644 66788888888887775433 3333444443
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.19 E-value=5.6 Score=33.82 Aligned_cols=115 Identities=10% Similarity=-0.020 Sum_probs=63.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC-CccC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHHHHHHH
Q 004744 177 IRTYVQARKLREGSEVFRLLRNKG-ICFS-------INACNSLLGGLVKIGWVDLAREVYAEVVRSG--IELNVYTLNIM 246 (732)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l 246 (732)
++.+...|.++.|+-+.+.+.... ..++ ..+...+.+++...|++..|...|+++++.. ++.+..+...+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 455677888888888877755321 1222 1256677788999999999999999976421 11111111111
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004744 247 VNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGK 304 (732)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 304 (732)
.. ...... ......++..---+...|.+.|++++|+.+++.+..+
T Consensus 107 ~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 107 GN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 00 000000 0011224444444677788888888888888876543
No 259
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.17 E-value=9.6 Score=33.57 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004744 638 EENMDKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDSELILWRMIEKGLNP 693 (732)
Q Consensus 638 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 693 (732)
.+...++..+|..|...|+--. ...|...+..+...|++.+|..+|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3446677777777777655443 3456666666777777777777777777766666
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.99 E-value=40 Score=33.61 Aligned_cols=167 Identities=10% Similarity=-0.062 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH-
Q 004744 450 VVTYNTILNGLCRAKMLTEADDLFNEMLER-GVFP---DFYTFTTLIHGHCKD-GNMNKALNLFDIMTQKSIKPDIVTY- 523 (732)
Q Consensus 450 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~- 523 (732)
......|...|.+.|+.++..+++.....- +..| .......++..+... +..+.-.++..+..+..- .+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345667778888888888888777765432 1111 122345566666553 334444444444433100 011222
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH
Q 004744 524 -----NTLIDGFCKVGEMEKANKLWADMISRKISPN-----YISYGILINGYCSMGHVTEAFRLWYEMVGK--GIKPTLV 591 (732)
Q Consensus 524 -----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 591 (732)
.-++..|...|++.+|.+++.++.+.-...| ...+..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2456667777777777777766665311111 123444455666667777777666665432 1223332
Q ss_pred HHHH----HHHHHH-HcCCHHHHHHHHHHHH
Q 004744 592 SCNT----IIKGYC-RSGDASKADEFLSKMV 617 (732)
Q Consensus 592 ~~~~----l~~~~~-~~g~~~~A~~~~~~~~ 617 (732)
+-.. -...+. ..+++.+|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2211 112334 5666777666665554
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.42 E-value=16 Score=37.28 Aligned_cols=97 Identities=16% Similarity=0.015 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHH--HH
Q 004744 557 SYGILINGYCSMGHVTEAFRLWYEMVGKG--IKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSE---GVDPDSIS--YN 629 (732)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~~ 629 (732)
+...+...|.+.|++++|.+.+.++.... ...-...+-.+++.+...+++..+...+.++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45567777888888888888888877642 2223455666777777778888888777776542 22222211 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004744 630 TLINGFVREENMDKAFALVSKMEN 653 (732)
Q Consensus 630 ~li~~~~~~g~~~~A~~~~~~~~~ 653 (732)
.-+-.+...+++.+|.+.|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223456777777777666554
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.08 E-value=9.8 Score=35.31 Aligned_cols=112 Identities=14% Similarity=0.155 Sum_probs=62.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcC
Q 004744 564 GYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSI----SYNTLINGFVREE 639 (732)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g 639 (732)
...+.|++++|++....-++.. |-|...-..++..+|-.|++++|.+-++.+.+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH-----
Confidence 3456677777777777777664 666666677777777777777777777776663 34422 22233222
Q ss_pred CHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 004744 640 NMDKAFALVSKMENQGLVP-----DVITYNVILTGFC--RQGRMHDSELILWRMIE 688 (732)
Q Consensus 640 ~~~~A~~~~~~~~~~g~~p-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 688 (732)
...=.+...-+-.| ...-...++.+.. ..|+.++|..+-.++.+
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 11112222211122 2223344444443 45777777777777765
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.52 E-value=18 Score=29.36 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004744 641 MDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLIN 703 (732)
Q Consensus 641 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 703 (732)
.=+..+-++.+....+-|++.+..+.+.+|.+.+++..|.++|+-...+ ..+...+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3345666667777778899999999999999999999999999988764 4444566777664
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.15 E-value=9.9 Score=38.79 Aligned_cols=109 Identities=10% Similarity=-0.009 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHH--H
Q 004744 591 VSCNTIIKGYCRSGDASKADEFLSKMVSE--GVDPDSISYNTLINGFVREENMDKAFALVSKMEN---QGLVPDVIT--Y 663 (732)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~g~~p~~~~--~ 663 (732)
.+...++..|.+.|++++|.+.|.++... +...-...+...+..+...+++..+...++++.. .+-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677889999999999999999999875 3233356777888899999999999999998765 333333321 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004744 664 NVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYT 699 (732)
Q Consensus 664 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 699 (732)
..-+-.+...+++.+|...|-++...--..+...+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~ 247 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYE 247 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHH
Confidence 112223446789999999988887632233443333
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.01 E-value=18 Score=27.48 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 605 DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILW 684 (732)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 684 (732)
..++|..+-+-+...+. ....-..-+..+...|++++|..+.+..- .||...|.+|.. .+.|.-+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 35666666655555332 11111122234556666666666554432 456665544432 25566666665555
Q ss_pred HHHHc
Q 004744 685 RMIEK 689 (732)
Q Consensus 685 ~~~~~ 689 (732)
++...
T Consensus 94 ~la~s 98 (116)
T 2p58_C 94 RLARS 98 (116)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 55443
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.46 E-value=52 Score=30.54 Aligned_cols=112 Identities=9% Similarity=0.145 Sum_probs=77.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcC
Q 004744 599 GYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVI----TYNVILTGFCRQG 674 (732)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g 674 (732)
...+.|++++|++....-++.. +.|...-..|+..+|-.|+++.|.+-++...+ +.|+.. .|..+|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~------ 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVK------ 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHH------
Confidence 4567899999999999888864 44777778899999999999999999999988 567643 3333332
Q ss_pred CHHHHHHHHHHHHHcCCCC----C-HHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 004744 675 RMHDSELILWRMIEKGLNP----D-RSTYTTLINGHV--SQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 675 ~~~~A~~~~~~~~~~g~~p----~-~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 723 (732)
|+..-++...-+-.| . ..-...++.++. ..|+.++|.++..++.+
T Consensus 77 ----aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 77 ----AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 222333333333333 1 233344555554 46999999999999875
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.98 E-value=25 Score=26.73 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=19.1
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004744 286 CREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQ 338 (732)
Q Consensus 286 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 338 (732)
...|+|++|..+.+... .||...|..|.. .+.|..+++..-+.++..
T Consensus 51 mNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 51 MNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34444444444443322 344444443322 234444444444434433
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.14 E-value=25 Score=29.43 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004744 679 SELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEMLQRGFVP 728 (732)
Q Consensus 679 A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 728 (732)
+..+|+.|..+||--. +.-|......+...|++++|.++++.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555544432 3444555555555555555555555555544443
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=73.91 E-value=99 Score=33.03 Aligned_cols=116 Identities=12% Similarity=-0.018 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004744 499 GNMNKALNLFDIMTQKSIKPDIVTYNTLIDGF----CKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEA 574 (732)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 574 (732)
.+.+.|...+........ .+......+-..+ ...+...++...+........ +.....-.+..-.+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHH
Confidence 478999999988765432 2333332222222 233435566677776655432 333333334444567999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 575 FRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 618 (732)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (732)
...|+.|.... .....-.--+.+++.+.|+.++|..+|.++..
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999886542 22344444567788889999999999998764
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.36 E-value=18 Score=27.44 Aligned_cols=77 Identities=12% Similarity=0.006 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004744 605 DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILW 684 (732)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 684 (732)
..++|..+-+-+...+. ....-..-+..+...|++++|..+.+.. ..||...|.+|.. .+.|.-+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 35666666665555432 1111112224455667777776654443 2466666654432 35666666666665
Q ss_pred HHHHc
Q 004744 685 RMIEK 689 (732)
Q Consensus 685 ~~~~~ 689 (732)
++...
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 55544
No 271
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=73.08 E-value=19 Score=27.47 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004744 571 VTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 618 (732)
Q Consensus 571 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (732)
.-+..+-++.+....+-|++.+..+.+++|.+.+++..|.++++-...
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555555566666666666666666666666666665544
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.27 E-value=24 Score=26.80 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=20.3
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004744 285 YCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQM 339 (732)
Q Consensus 285 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 339 (732)
+...|+|++|..+.+... .||...|..|.. .+.|..+++..-+.++...
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 334445555444433322 344444443322 2444444444444444433
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.88 E-value=33 Score=29.12 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004744 642 DKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD 694 (732)
Q Consensus 642 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 694 (732)
+++..+|..|...|+--. ...|...+..+...|++.+|..+|+.-++.+-.|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 346667777777665443 34556666666677777777777777777666663
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.25 E-value=39 Score=29.71 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=35.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004744 603 SGDASKADEFLSKMVSEGVDPD-SISYNTLINGFVREENMDKAFALVSKMENQGLVP 658 (732)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 658 (732)
.++..++.++|..|...|+... ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3445667777777766655443 4455666666667777777777777777665555
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=66.55 E-value=1.1e+02 Score=30.50 Aligned_cols=298 Identities=13% Similarity=0.041 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-Cc---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHH-
Q 004744 415 NVLYTIIINGYCRNGFVLEALKMRDEMLEKGC-VM---DVVTYNTILNGLCRA-KMLTEADDLFNEMLERGVFPDFYTF- 488 (732)
Q Consensus 415 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~---~~~~~~~li~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~- 488 (732)
......|...|.+.|+.++..+++......=. .+ .......+++.+... +..+.-.++..+..+..-. +..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34667889999999999999998887654210 11 234456777777664 4455555555555542110 11233
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHH
Q 004744 489 -----TTLIHGHCKDGNMNKALNLFDIMTQK--SIK---PDIVTYNTLIDGFCKVGEMEKANKLWADMISR--KISPNYI 556 (732)
Q Consensus 489 -----~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 556 (732)
..++..|...|++.+|..++..+.+. ... .-...+..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 36889999999999999999888763 111 11234556677889999999999999887643 1223443
Q ss_pred HHHH----HHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHH
Q 004744 557 SYGI----LINGYC-SMGHVTEAFRLWYEMVGKGIKPTLVSCNT----IIKGYCRSGDASKADEFLS-KMVSEGVDPDSI 626 (732)
Q Consensus 557 ~~~~----li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~ 626 (732)
.... -.-.+. ..+++.+|...|-+..+.--..+...... ++-+-.-.++..+-..++. +....-..|+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHH
Confidence 3322 123355 78999999999887753200111111111 1111122344333333332 211111245555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 004744 627 SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGH 705 (732)
Q Consensus 627 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 705 (732)
.+..++.++ ..+++.+...+++..... +..|+.....+-..+.+ -. ...+.++ +.| ...+...+...+
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~~~L~~~--Ir---~~~L~~i----~~pYsrIsl~~iA~~l 326 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKKE-LAEDVIVQAHLGTLYDT--ML---EQNLCRI----IEPYSRVQVAHVAESI 326 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTTT-TTTSHHHHHHHHHHHHH--HH---HHHHHHH----HTTCSEEEHHHHHHHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHH--HH---HHHHHHH----hHhhceeeHHHHHHHH
Confidence 555566554 567777777766665432 44565432111111100 00 1122222 234 446677777766
Q ss_pred HhcCCHHHHHHHHHHHHHCCC
Q 004744 706 VSQNNLKEAFRFHDEMLQRGF 726 (732)
Q Consensus 706 ~~~g~~~~A~~~~~~m~~~g~ 726 (732)
.- ..+++...+-+|+..|.
T Consensus 327 ~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 327 QL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp TC--CHHHHHHHHHHHHHTTS
T ss_pred Cc--CHHHHHHHHHHHHHCCC
Confidence 54 68899999999988764
No 276
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.38 E-value=62 Score=26.30 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004744 571 VTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLI 632 (732)
Q Consensus 571 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 632 (732)
.-+..+-++.+...++-|++.+....+++|.+.+++..|..+|+-...+ ..+....|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 3345555566666666777777777777777777777777777666543 222333454443
No 277
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=61.08 E-value=1.2e+02 Score=29.04 Aligned_cols=30 Identities=3% Similarity=-0.113 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 004744 277 TYNTLINAYCREGFLEEAFQLMNSMSGKGL 306 (732)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 306 (732)
+...-+....|.+++..|..+-+++++.+.
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 345556677788888888888888887654
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=59.71 E-value=45 Score=32.63 Aligned_cols=63 Identities=16% Similarity=0.295 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCC
Q 004744 593 CNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREEN--MDKAFALVSKMENQGL 656 (732)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~ 656 (732)
...++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+...+++..+.+.|+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 455666677777777777777776421100 12233333334433322 3445555655555543
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=56.36 E-value=35 Score=30.57 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004744 642 DKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDSELILWRMIEKGLNP 693 (732)
Q Consensus 642 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 693 (732)
+++..+|..|...|+--. ...|...+..+...|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 566777777777665544 3456666677777788888888888777766666
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.60 E-value=94 Score=25.93 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=21.9
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004744 609 ADEFLSKMVSEGVDPD-SISYNTLINGFVREENMDKAFALVSKMENQGLVP 658 (732)
Q Consensus 609 A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 658 (732)
+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444444444433322 2333444444444444444444444444443333
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.87 E-value=62 Score=33.41 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-ccCH--HHH-HHHHHHHHHcCChHHHHHHHHHHHHc
Q 004744 170 SLIFDLVIRTYVQARKLREGSEVFRLLRNKGI-CFSI--NAC-NSLLGGLVKIGWVDLAREVYAEVVRS 234 (732)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~ 234 (732)
..++|.+++.|...+.+++|..+..+..---. .+|. ..| --++..+.-.+++.+|.+.+..+.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66788888888888888888888887641100 0111 122 23456666778888888888877654
No 282
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=50.03 E-value=2.7e+02 Score=29.89 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=22.0
Q ss_pred HHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCC
Q 004744 695 RSTYTTLING-----HVSQNNLKEAFRFHDEMLQRGFVPD 729 (732)
Q Consensus 695 ~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~~~g~~pd 729 (732)
..|+..|.+. +.+.|+|++|.+.++++ ++.|-
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L---~llPl 569 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELL---DLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT---SCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC
Confidence 3455555433 36789999999888876 66664
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.09 E-value=1.3e+02 Score=25.53 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004744 608 KADEFLSKMVSEGVDPD-SISYNTLINGFVREENMDKAFALVSKMENQGLVPDV 660 (732)
Q Consensus 608 ~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 660 (732)
.+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 35667777777665544 445666666677777777777777777776656643
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.17 E-value=98 Score=27.68 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=7.5
Q ss_pred HHHcCCHHHHHHHHHH
Q 004744 285 YCREGFLEEAFQLMNS 300 (732)
Q Consensus 285 ~~~~g~~~~A~~~~~~ 300 (732)
.+..|+.+-+..+++.
T Consensus 86 A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3445555544444443
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.16 E-value=97 Score=30.30 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 004744 173 FDLVIRTYVQARKLREGSEVFRLLR 197 (732)
Q Consensus 173 ~~~l~~~~~~~g~~~~A~~~~~~~~ 197 (732)
...++.-|...|+.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4567888999999999999999875
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.41 E-value=60 Score=29.22 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=36.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhh--HHHHHHHHHhc
Q 004744 248 NALCKDHKIDSAKMFLCEMEQKGVYPDTVT--YNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFT--YNSLINGLCKK 323 (732)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~ 323 (732)
...++.|+.+....+++.+.+.|..++... ..+.+...+..|+.+-+. .+.+.|..++... -.+.+...+..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR----LLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHHHHc
Confidence 334555666666666665555544333211 112333444556654333 3333444333211 11223334455
Q ss_pred CChhHHHHHHHH
Q 004744 324 GRCDRAKEVLDE 335 (732)
Q Consensus 324 g~~~~A~~~~~~ 335 (732)
|+.+-+..+++.
T Consensus 90 ~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 90 RSPTCLRALLDS 101 (241)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 555544444443
No 287
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=41.58 E-value=2.4e+02 Score=26.88 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 004744 277 TYNTLINAYCREGFLEEAFQLMNSMSGKGL 306 (732)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 306 (732)
+...-+....|.+++..|..+-+++++.+.
T Consensus 200 aLr~AM~~a~K~KNy~tAa~fArrLLel~p 229 (320)
T 3mkr_B 200 VLRTALNLFFKLKNFRTAAAFARRLLELGP 229 (320)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 344556677788888888888888888643
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.81 E-value=1.5e+02 Score=23.79 Aligned_cols=62 Identities=16% Similarity=0.298 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCC
Q 004744 593 CNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREEN--MDKAFALVSKMENQG 655 (732)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g 655 (732)
...++.-|...|+.++|.+.++++..-.. ........+..++-+.+. .+....++..+.+.|
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 45667777777888888888877642000 012223333344444322 344555555555544
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.83 E-value=1.2e+02 Score=28.82 Aligned_cols=25 Identities=8% Similarity=0.200 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004744 453 YNTILNGLCRAKMLTEADDLFNEML 477 (732)
Q Consensus 453 ~~~li~~~~~~~~~~~A~~~~~~~~ 477 (732)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4566777888888888888877753
No 290
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=35.77 E-value=2.2e+02 Score=24.75 Aligned_cols=17 Identities=18% Similarity=-0.027 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHHcCC
Q 004744 274 DTVTYNTLINAYCREGF 290 (732)
Q Consensus 274 ~~~~~~~li~~~~~~g~ 290 (732)
|..+-...+.++.+.|+
T Consensus 94 ~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444444444444
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.54 E-value=1.8e+02 Score=26.30 Aligned_cols=90 Identities=10% Similarity=0.010 Sum_probs=41.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004744 596 IIKGYCRSGDASKADEFLSKMVSE--GVDP----DSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTG 669 (732)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 669 (732)
-++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 355666667777777777665442 2221 0011111122222222222233333333 21 3344444555566
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004744 670 FCRQGRMHDSELILWRMIE 688 (732)
Q Consensus 670 ~~~~g~~~~A~~~~~~~~~ 688 (732)
+.+.|+-++|.++|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 6666666666666655543
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.43 E-value=3e+02 Score=31.27 Aligned_cols=111 Identities=11% Similarity=0.093 Sum_probs=56.3
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004744 166 CGSNSLIFDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNI 245 (732)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (732)
|+.++..--.++++|...|++++|.+.|+++- .|+..+...... .+....++... +. ......-|.-
T Consensus 836 ~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~~~ll~~~-e~-~~~~~~YY~h 902 (950)
T 4gq2_M 836 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREFQEIAEKY-HH-QNLLSCYYLH 902 (950)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHHHHHHHHT-TT-CSHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhhhhccCcc-cc-cchhHHHHHH
Confidence 55555555567888888899999999888754 222111000000 00000011000 00 0111224566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcC
Q 004744 246 MVNALCKDHKIDSAKMFLCEMEQKGVYPDT----VTYNTLINAYCREG 289 (732)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g 289 (732)
++..+-+.+-++.+.++-+..++.--.-|. ..|+.+..+.+..|
T Consensus 903 V~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 903 LSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 677777777777777777776654211122 24566666655444
No 293
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.24 E-value=2.6e+02 Score=31.77 Aligned_cols=44 Identities=5% Similarity=0.126 Sum_probs=32.9
Q ss_pred cChhHHHHHHHhHHhhCCCCCCChHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 004744 95 DNLQVGQRFIDFIALNFPNVKHSSMSLSAMIHFLVRGRRISDAQALILRMV 145 (732)
Q Consensus 95 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~ 145 (732)
+.++.+..+..|+ +.++.+--.++++|...|++++|...|.++-
T Consensus 824 ~~~~~a~eL~~~~-------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 824 KQYNACMQLIGWL-------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp TCHHHHHHHGGGC-------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred cHHHHHHHHHhhc-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4566666665553 3355666789999999999999999998773
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.93 E-value=1.7e+02 Score=24.31 Aligned_cols=64 Identities=16% Similarity=0.260 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCC
Q 004744 592 SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREEN--MDKAFALVSKMENQGL 656 (732)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~ 656 (732)
....++.-|...|+.++|...++++..-. -........+..++-+.+. .+.+..++..+.+.|+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 45677888888888888888888874210 0012333344444444322 3455566666665543
No 295
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=33.14 E-value=60 Score=21.95 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=28.4
Q ss_pred hhhhhccCCChHHHHHHHHhhccChhHHHHHHHh
Q 004744 73 SLRSYQFRLNSVIIVEVLYRLRDNLQVGQRFIDF 106 (732)
Q Consensus 73 ~l~~~~~~l~~~~~~~~l~~~~~~~~~a~~~f~~ 106 (732)
.|+..-|.++...+..||..+.++.+.|...+-.
T Consensus 15 ~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 15 AIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566677899999999999999999999877654
No 296
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.91 E-value=4e+02 Score=26.91 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C---CCHHHHHHHHHHHHH
Q 004744 535 EMEKANKLWADMISR--------KISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGI-K---PTLVSCNTIIKGYCR 602 (732)
Q Consensus 535 ~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~ 602 (732)
..++...++...... +...+......++.. ..|+..+++.+++.+..... . ....+...
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~------- 236 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPEL------- 236 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHH-------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHH-------
Confidence 455666666666553 222345555555544 46788888877777654321 0 01112111
Q ss_pred cCCHHHHHHHHHHHHHCC---CCC-CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004744 603 SGDASKADEFLSKMVSEG---VDP-DSISYNTLINGF---VREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGR 675 (732)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~---~~~-~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 675 (732)
+++..... ... ....|. +++++ .+.++.+.|+.++.+|.+.|..|....-..+..+...-|.
T Consensus 237 ----------v~~~l~~~~~~~dk~gd~~yd-~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 237 ----------LTEIAGERSARFDNKGDRFYD-LISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp ----------HHHHHTCCCCC---CCHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred ----------HHHHHhhhhhccCCccchHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 12222211 011 122232 33333 3567899999999999998877665555555555555554
Q ss_pred H-----HHHHHHHHHHHHcCCC
Q 004744 676 M-----HDSELILWRMIEKGLN 692 (732)
Q Consensus 676 ~-----~~A~~~~~~~~~~g~~ 692 (732)
- .-|...++....-|.+
T Consensus 306 a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 306 ADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp GCTHHHHHHHHHHHHHHHSCHH
T ss_pred CChhHHHHHHHHHHHHHHhCCc
Confidence 2 2344444444444443
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.01 E-value=2.7e+02 Score=25.21 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004744 274 DTVTYNTLINAYCREGFLEEAFQLMNSMS 302 (732)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 302 (732)
+...-...+..+.+.|+-++|.++|=+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 34444445566666666666666665543
No 298
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.72 E-value=1.4e+02 Score=28.34 Aligned_cols=25 Identities=16% Similarity=0.412 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 004744 278 YNTLINAYCREGFLEEAFQLMNSMS 302 (732)
Q Consensus 278 ~~~li~~~~~~g~~~~A~~~~~~m~ 302 (732)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3456677777777777777777653
No 299
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.25 E-value=1.1e+02 Score=28.66 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=9.7
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 004744 316 LINGLCKKGRCDRAKEVLDE 335 (732)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~ 335 (732)
.+...+..|..+-+.-+++.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHc
Confidence 33444455555555444444
No 300
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=29.73 E-value=1.1e+02 Score=28.27 Aligned_cols=18 Identities=11% Similarity=0.291 Sum_probs=7.3
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 004744 464 KMLTEADDLFNEMLERGV 481 (732)
Q Consensus 464 ~~~~~A~~~~~~~~~~~~ 481 (732)
+......++.+.+.+.|.
T Consensus 193 ~~~~~~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGA 210 (285)
T ss_dssp SCTTTHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHcCC
Confidence 333333344444444443
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.26 E-value=1.6e+02 Score=23.58 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=11.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 004744 455 TILNGLCRAKMLTEADDLFNEM 476 (732)
Q Consensus 455 ~li~~~~~~~~~~~A~~~~~~~ 476 (732)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 302
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=28.55 E-value=1.8e+02 Score=22.86 Aligned_cols=77 Identities=18% Similarity=0.266 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004744 605 DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN-QGLVPDVITYNVILTGFCRQGRMHDSELIL 683 (732)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 683 (732)
++++|..-+++.... .+|......++..+... ++-|.++.+...+ .|+ ++.++...+....+.|-+++. +.+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 567788877777654 45666666666555332 4555555554443 344 344555566666666666554 455
Q ss_pred HHHHH
Q 004744 684 WRMIE 688 (732)
Q Consensus 684 ~~~~~ 688 (732)
.+|..
T Consensus 76 ~~m~~ 80 (119)
T 1wty_A 76 LEMLE 80 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 303
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=28.07 E-value=89 Score=28.83 Aligned_cols=7 Identities=29% Similarity=0.230 Sum_probs=2.8
Q ss_pred HhcCCHH
Q 004744 461 CRAKMLT 467 (732)
Q Consensus 461 ~~~~~~~ 467 (732)
++.|..+
T Consensus 227 ~~~~~~~ 233 (285)
T 1wdy_A 227 VEKKHLG 233 (285)
T ss_dssp HHTTCHH
T ss_pred HHcCCHH
Confidence 3344443
No 304
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.26 E-value=1.1e+02 Score=27.47 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004744 607 SKADEFLSKMVSEGVDPD-SISYNTLINGFVREENMDKAFALVSKMENQGLVP 658 (732)
Q Consensus 607 ~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 658 (732)
+++.++|..|...|+... ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355566666666655443 3445555666666677777777666666655455
No 305
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=26.60 E-value=3.1e+02 Score=23.67 Aligned_cols=142 Identities=15% Similarity=-0.014 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 004744 238 LNVYTLNIMVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLI 317 (732)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 317 (732)
++...-...+..+.+.|.. ++...+..+... +|..+-...+.++.+.|+. ++...+..+.. .++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 3444444444444444442 233333333332 3555555555555555543 23333333333 23555555666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCC
Q 004744 318 NGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQ 395 (732)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 395 (732)
.++.+.|+.+ +...+.++.+ .++..+-...+.++.+.|.. ++...+..+.+ .++..+-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 6666666543 3334444443 34544444445555554443 23333333332 2344444444555554444
No 306
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.56 E-value=54 Score=30.09 Aligned_cols=19 Identities=11% Similarity=-0.015 Sum_probs=8.8
Q ss_pred HcCChHHHHHHHHHHHHcC
Q 004744 217 KIGWVDLAREVYAEVVRSG 235 (732)
Q Consensus 217 ~~g~~~~a~~~~~~~~~~~ 235 (732)
+.|+.+....+++.+.+.|
T Consensus 14 ~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 4455554444444444433
No 307
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=25.90 E-value=74 Score=28.42 Aligned_cols=11 Identities=0% Similarity=-0.170 Sum_probs=4.8
Q ss_pred HHHHHcCCHHH
Q 004744 283 NAYCREGFLEE 293 (732)
Q Consensus 283 ~~~~~~g~~~~ 293 (732)
...++.|+.+-
T Consensus 47 ~~A~~~~~~~~ 57 (240)
T 3eu9_A 47 HWAAINNRIDL 57 (240)
T ss_dssp HHHHHTTCHHH
T ss_pred HHHHHhCCHHH
Confidence 33344455433
No 308
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.81 E-value=97 Score=21.58 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=28.3
Q ss_pred hhhhhccCCChHHHHHHHHhhccChhHHHHHHHhH
Q 004744 73 SLRSYQFRLNSVIIVEVLYRLRDNLQVGQRFIDFI 107 (732)
Q Consensus 73 ~l~~~~~~l~~~~~~~~l~~~~~~~~~a~~~f~~~ 107 (732)
.|+..-|.++...|..+|..+.++.+.|...+-.+
T Consensus 24 ~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 24 DFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp HHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 35566678999999999999999999987776544
No 309
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.76 E-value=3e+02 Score=23.15 Aligned_cols=15 Identities=7% Similarity=-0.082 Sum_probs=7.3
Q ss_pred cCCHHHHHHHHHHHH
Q 004744 708 QNNLKEAFRFHDEML 722 (732)
Q Consensus 708 ~g~~~~A~~~~~~m~ 722 (732)
.|++.-|.+++.+.+
T Consensus 88 rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 88 FEDDDGMRSLFRTSL 102 (161)
T ss_dssp HCCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH
Confidence 455555555554443
No 310
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.59 E-value=2.9e+02 Score=23.56 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=13.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 004744 282 INAYCREGFLEEAFQLMNSMSGKGLKPG 309 (732)
Q Consensus 282 i~~~~~~g~~~~A~~~~~~m~~~g~~p~ 309 (732)
+...+..|+.+.-.++.+.+++.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3333444554444445555555554444
No 311
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.56 E-value=3.4e+02 Score=23.74 Aligned_cols=92 Identities=16% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004744 631 LINGF---VREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGR-----MHDSELILWRMIEKGLNPDRSTYTTLI 702 (732)
Q Consensus 631 li~~~---~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~g~~p~~~~~~~l~ 702 (732)
+|+++ .+-.+.+.|+-.+-+|++.| .|....-..++.+...-|. ...|...++.....|.+--.......+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004744 703 NGHVSQNNLKEAFRFHDEMLQ 723 (732)
Q Consensus 703 ~~~~~~g~~~~A~~~~~~m~~ 723 (732)
--++.+-+-..+...++..++
T Consensus 96 iyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 312
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=24.13 E-value=5.3e+02 Score=25.51 Aligned_cols=90 Identities=13% Similarity=0.051 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHH--------------hcCCHHHHHHHHH
Q 004744 624 DSISYNTLINGFVREENMDKAFALVSKMEN----QG-LVPDVITYNVILTGFC--------------RQGRMHDSELILW 684 (732)
Q Consensus 624 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g-~~p~~~~~~~l~~~~~--------------~~g~~~~A~~~~~ 684 (732)
...-|..+...+.+++++.+|++.|.+.-. .+ ..-|..+|.-++..-- ..|..+.+.+---
T Consensus 317 HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAneliP~~~k~~a~~~~~G~~~~~~~~~~ 396 (550)
T 3u84_A 317 HIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAASLLEAGEERPGEQSQG 396 (550)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHTC----------
T ss_pred CccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhHHHHHhhhhcccccccccccccc
Confidence 455566666667777777777777666543 11 2234455554443321 1111100000000
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004744 685 RMIEKGLNPDRSTYTTLINGHVSQNNLKE 713 (732)
Q Consensus 685 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 713 (732)
.-....+--|+.+|..|++-|-...+|+|
T Consensus 397 ~~~~~siL~Dp~cfA~LLrFYDgIC~WEE 425 (550)
T 3u84_A 397 TQSQGSALQDPECFAHLLRFYDGICKWEE 425 (550)
T ss_dssp -----CGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHhcChHHHHHHHHHhhcceeccc
Confidence 00001133478888888888766666665
No 313
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=24.03 E-value=4.1e+02 Score=24.21 Aligned_cols=234 Identities=15% Similarity=0.022 Sum_probs=0.0
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----hhHHHHHHHHHHhCCCCCCHHH
Q 004744 202 CFSINACNSLLGGLVKIGWVDLAREVYAEVVRSGIELNVYTLNIMVNALCKDHK----IDSAKMFLCEMEQKGVYPDTVT 277 (732)
Q Consensus 202 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~g~~p~~~~ 277 (732)
.++...-...+.++.+.| ...+...+..+.. .++...-...+.++.+.|. ......++..+... .++..+
T Consensus 34 ~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~v 107 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRG-GQDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACV 107 (280)
T ss_dssp CSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHH
T ss_pred cCCHHHHHHHHHHHHccC-CchHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHH
Q ss_pred HHHHHHHHHHcCC-----HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004744 278 YNTLINAYCREGF-----LEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLL 352 (732)
Q Consensus 278 ~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 352 (732)
-...+.++.+.|. .+.+...+..+... ++...-...+.++...|+ .++...+..+.+ .++..+-...+
T Consensus 108 r~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d---~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~ 180 (280)
T 1oyz_A 108 RATAIESTAQRCKKNPIYSPKIVEQSQITAFD---KSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC---SCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHhhC---CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHHHHHHH
Q ss_pred HHHHcCC-CHhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 004744 353 VESCRKE-NMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFV 431 (732)
Q Consensus 353 ~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 431 (732)
.++...| ....+...+..+... ++..+-...+.++.+.|+.+....+...+.+ ++ .-...+.++.+.|.
T Consensus 181 ~aL~~~~~~~~~~~~~L~~~l~d---~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~- 250 (280)
T 1oyz_A 181 FAININKYDNSDIRDCFVEMLQD---KNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGD- 250 (280)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCC-
T ss_pred HHHHhhccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCc-
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 004744 432 LEALKMRDEMLEKGCVMDVVTYNTILNGL 460 (732)
Q Consensus 432 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 460 (732)
.+++..+..+... .++.......+..+
T Consensus 251 ~~~~~~L~~~l~~--~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 251 KTLLPVLDTMLYK--FDDNEIITSAIDKL 277 (280)
T ss_dssp GGGHHHHHHHHTT--SSCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHhc--CCCcHHHHHHHHHh
No 314
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.37 E-value=3.7e+02 Score=23.43 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=12.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH
Q 004744 603 SGDASKADEFLSKMVSEGVDPDS 625 (732)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~~~~~~ 625 (732)
..+.+.|+-.+.+|++.|-.|..
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~ 42 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLY 42 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHH
Confidence 45566666666666665544433
No 315
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.58 E-value=1.5e+02 Score=24.73 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 004744 456 ILNGLCRAKMLTEADDLFNEM 476 (732)
Q Consensus 456 li~~~~~~~~~~~A~~~~~~~ 476 (732)
++.-|...|+.++|.+.++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 444455555555555555554
No 316
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=22.40 E-value=4.9e+02 Score=25.21 Aligned_cols=85 Identities=16% Similarity=0.041 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C----
Q 004744 624 DSISYNTLINGFVREENMDKAFALVSKMEN----QG-LVPDVITYNVILTGFCRQGRMHDSELILWRMIEK----G---- 690 (732)
Q Consensus 624 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g---- 690 (732)
...-|..+...+.+.+++.+|++.|.+.-. .+ ..-|..+|--++..--. ---.++++.... |
T Consensus 295 HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAne-----liP~~~k~a~~~~~~~G~~~~ 369 (472)
T 3re2_A 295 HIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIAND-----LIPNILKDAVAKADPSGTGST 369 (472)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHT-----HHHHHHHHHHTCC--------
T ss_pred CccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH-----HhhHHHHhhhhccCCCCcchh
Confidence 455666677777777777777777766544 11 12244455444432210 001122222111 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHH
Q 004744 691 -LNPDRSTYTTLINGHVSQNNLKE 713 (732)
Q Consensus 691 -~~p~~~~~~~l~~~~~~~g~~~~ 713 (732)
+--|+.++..|++-|-...+|+|
T Consensus 370 siL~DpecfA~LLrFYDgIC~WEE 393 (472)
T 3re2_A 370 NLTSDPKFFALVLQFYDGICLWEE 393 (472)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred hhccChHHHHHHHHHhhcceeccc
Confidence 22367778888777665555554
No 317
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.34 E-value=47 Score=22.47 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=17.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCC
Q 004744 706 VSQNNLKEAFRFHDEMLQRGFVPDD 730 (732)
Q Consensus 706 ~~~g~~~~A~~~~~~m~~~g~~pd~ 730 (732)
...|+.+.|+..+-+|...+..|+.
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 3457788888887777766666654
No 318
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.24 E-value=1e+02 Score=27.48 Aligned_cols=42 Identities=19% Similarity=0.034 Sum_probs=17.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCccCHH--HHHHHHHHHHHcCChHHHHH
Q 004744 181 VQARKLREGSEVFRLLRNKGICFSIN--ACNSLLGGLVKIGWVDLARE 226 (732)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~ 226 (732)
++.|+++ +++.+.+.|..++.. .-...+...++.|+.+.+..
T Consensus 17 ~~~g~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 60 (240)
T 3eu9_A 17 TQYGIYE----RCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60 (240)
T ss_dssp HHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHcCChH----HHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHH
Confidence 4556543 344444455443221 11123344455566544333
No 319
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.10 E-value=6.6e+02 Score=25.87 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH--HHH-HHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004744 240 VYTLNIMVNALCKDHKIDSAKMFLCEMEQKGV-YPDT--VTY-NTLINAYCREGFLEEAFQLMNSMSGK 304 (732)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~--~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 304 (732)
...+|.+++.|...+.++.|..+..+..--.. .+|. ..| -.+...+.-.+++.+|.+.+.....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44677777888888888888888877641100 0111 122 22445566677888888877777654
No 320
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.94 E-value=92 Score=28.42 Aligned_cols=54 Identities=11% Similarity=0.003 Sum_probs=31.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCccCHH-------HHHHHHHHHH--HcCChHHHHHHHHHHH
Q 004744 179 TYVQARKLREGSEVFRLLRNKGICFSIN-------ACNSLLGGLV--KIGWVDLAREVYAEVV 232 (732)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~ll~~~~--~~g~~~~a~~~~~~~~ 232 (732)
..++.|+.+....+++.+.+.|..++.. -++.|..+.. +.|+.+-+..+++.-.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3456788877777777766666554422 2334443332 5577776666666543
No 321
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.81 E-value=3.2e+02 Score=23.32 Aligned_cols=64 Identities=9% Similarity=0.046 Sum_probs=32.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHH-cCCHHHHHHHHHHHhhCCCCCCH
Q 004744 247 VNALCKDHKIDSAKMFLCEMEQKGVYPDTVT---YNTLINAYCR-EGFLEEAFQLMNSMSGKGLKPGV 310 (732)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~---~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~ 310 (732)
+...+..|..+.-.++.+.+++.|..++... ++.|..+... ..+.....++.+.+.+.|..++.
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 4444555655555566666777776655421 2222222111 22344445666666666665553
No 322
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=21.46 E-value=1.2e+02 Score=17.71 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004744 174 DLVIRTYVQARKLREGSEVFRLLRNKG 200 (732)
Q Consensus 174 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 200 (732)
++||++| ++|+..|...++.|
T Consensus 12 tALIKay------DKAVaSfk~alk~~ 32 (37)
T 3s6n_M 12 TALIKAY------DKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHH------HHHHHHHHHHHhcC
Confidence 4678877 78999999888765
No 323
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=20.64 E-value=1.5e+02 Score=20.45 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHH
Q 004744 173 FDLVIRTYVQARKLREGSEVFRLLRNKGICFSINACNSLLGGLVK 217 (732)
Q Consensus 173 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 217 (732)
++-++..+++..-.++++..++++.+.|.- +...|-.-.+.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 344555566666667777777777776644 66666655555554
No 324
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.39 E-value=6.6e+02 Score=25.23 Aligned_cols=29 Identities=10% Similarity=0.008 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 004744 117 SSMSLSAMIHFLVRGRRISDAQALILRMVRK 147 (732)
Q Consensus 117 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~ 147 (732)
+..+...++.. ..|+..++..+++.+...
T Consensus 193 ~~~al~~L~~~--~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 193 PDETRRAIAEL--VNGDARRALNTLEMMADM 221 (447)
T ss_dssp CHHHHHHHHHH--HCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH--CCCCHHHHHHHHHHHHHh
Confidence 45555555554 468888888888877654
No 325
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.14 E-value=2.4e+02 Score=26.13 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=5.7
Q ss_pred HHcCCHHHHHHHH
Q 004744 286 CREGFLEEAFQLM 298 (732)
Q Consensus 286 ~~~g~~~~A~~~~ 298 (732)
+..|+.+-+.-++
T Consensus 103 ~~~g~~~~v~~Ll 115 (285)
T 3kea_A 103 VDSGNMQTVKLFV 115 (285)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 4455544433333
Done!