Citrus Sinensis ID: 004745

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730--
Protein Sequence
MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEccccccccEEEEEEEccccccEEEEEEccccEEEEEccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEccccccEEEccccccEEEEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccccccEEEEccccccccccccccEEEEEEcccccEEEEEEcccEEEEEEccccccccccccccccccEEEcccccccccccccccccccccccccccEEcccccccHHHHHHHccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccHHHHHHHHHHHcHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccEEEEEccccccEEEEEcccccccccccccccEEEccccccccccEEcccccccccEEEEEEEcccccEEEEccccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEccccccccEEEccEEcccHHHHHHHHcccEEEcccccccccHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccHHHHEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEccccccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccccccccEEcccccccccEEEEEEccccccEEEEEccccEEEEEEccccccccccccccccccccEEEcccccccccccccEEEEEEEcccccEEEEEccccEEEEEEcccccccEEEcccccccEEEEEEEcccccEEEccccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccccccccEEEcccccEEEEccccccEEEEEEcccccEEEccccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEcccccEEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEHEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEccccccEEEEcccccccEEEEEEEEcccccEEEccccccEEEEHHHccccccccccccccccEEccc
Coil and Loop (DISEMBL)
MHSSLVRRLsqereleghqgcvnaiswnskgsllisgsddthinvWSYSSRKLLHSIetghsanvfctkfvpetsdelvvsgagdaEVRLFNlsrfsgrglddnaitpsalyqcHTRRVKKLAVEvgnphvvwsasedgtlrqhdfrqgsscppagsshqECRNILLDLrcgakrsladppkqtlslkscdisstrphlllvggsdafarlydrrmlppltscqkrmspppcvnyfcpmhlsehgrsslhlthvtfspngEEVLLSYSGEHVYLMDVnhaggramrytvgdaskimsftptlnglelqppihdflQTNIRVRGEVATGLGKCRMLVEIARNsleegkhpyygieaCNEVLEghlsgigpmlRHECLCIRAALLLKRKWKNDAQMAIRDCynarridsssfRAHLYMSEALEQLCKYKEALDFAIAAqcldpsnsvmAEKVENIKKHIAAAEteknnkandggarseprtgrvlsLSDIIYrseansdasqdgprseredsdydeevevdfhtsvpgdegrdveanflhgslnvrihrrgdsaretvdangssgspssssqndripyqpetVIDMKQRYVGhcnvgtdikqasflgqrgdyiasgsddgrwfIWEKQTGRLIKMLLgdeavvncvqchpfdcvvatsgidntikiwtpsasvpsivsggaagpdTADVLEAMESNQRKLSRNREHSLSYELLERFhmhefsegslrpfecaqs
Flexible Loop (DISEMBL)
MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSrfsgrglddnaitpsalyqCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRsladppkqtlslkscdisstrphLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAaaeteknnkandggarseprtgrVLSLSDIIYrseansdasqdgprseredsdydeevEVDFHtsvpgdegrdvEANFLHGSLNVRIHRRGDSAREtvdangssgspssssqndriPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIasgsddgrwFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMEsnqrklsrnreHSLSYELLERFHMhefsegslrpfecaqs
Low Complexity Region (SEG)
MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIaaaeteknnkanDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPrseredsdydeevevdFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANgssgspssssQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS
Disordered region (IsUnstruct)
******************QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA**************************CRNILLDLRCGA****************CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP**********************************************************************************************FLH*****************************************TVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASV*************************************************************
Disordered Region (DISOPRED)
*HSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP*****HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG***************RVRGEVATGLGK*R**VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDS********************DRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVL*AME*NQRKLSRNREHSLSYELLERFHMHEF*************
Disordered Region (DISEMBL)
****************GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD**************QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEK**************TGRVLSLSDIIYRSE*********************EVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRG************************IPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS
Disordered Region (DISPRO)
*HSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFEC***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKxxxxxxxxxxxxxxxxxxxxxGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	732	2.2.26 [Sep-21-2011]
Q8N5D0	677	WD and tetratricopeptide	yes	no	0.575	0.621	0.305	9e-46
Q80ZK9	677	WD and tetratricopeptide	yes	no	0.508	0.549	0.295	1e-43
Q9DC22	876	DDB1- and CUL4-associated	no	no	0.393	0.328	0.313	4e-34
Q58WW2	860	DDB1- and CUL4-associated	no	no	0.393	0.334	0.310	9e-34
Q5R9B8	860	DDB1- and CUL4-associated	no	no	0.393	0.334	0.310	1e-33
O94527	809	WD repeat protein iqw1 OS	yes	no	0.438	0.396	0.291	1e-33
Q5R448	597	DDB1- and CUL4-associated	no	no	0.356	0.437	0.288	4e-28
Q5TAQ9	597	DDB1- and CUL4-associated	no	no	0.356	0.437	0.285	3e-27
Q5U2M6	591	DDB1- and CUL4-associated	no	no	0.319	0.395	0.296	4e-27
Q8N7N5	591	DDB1- and CUL4-associated	no	no	0.356	0.441	0.282	8e-27

>sp|Q8N5D0|WDTC1_HUMAN WD and tetratricopeptide repeats protein 1 OS=Homo sapiens GN=WDTC1 PE=1 SV=2

 Score =  185 bits (470), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 152/497 (30%), Positives = 221/497 (44%), Gaps = 76/497 (15%)

Query: 5   LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 64
            +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN
Sbjct: 33  FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92

Query: 65  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 124
           +F  KF+P   D ++++GA D++V + +L+                ++  HT RVK++A 
Sbjct: 93  IFSVKFLPHAGDRILITGAADSKVHVHDLT----------VKETIHMFGDHTNRVKRIAT 142

Query: 125 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAKRSLADPPK 182
               P+  WSA+EDG +RQ+D R+        S H E   +L+DL   CG          
Sbjct: 143 APMWPNTFWSAAEDGLIRQYDLRE-------NSKHSE---VLIDLTEYCG---------- 182

Query: 183 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC----- 237
           Q +  K   ++    + L VG S  F RLYD RM+       K+ SP   V+ FC     
Sbjct: 183 QLVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMIHNHRKSMKQ-SPSAGVHTFCDRQKP 241

Query: 238 --------------PMHLSEHGR--SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281
                         P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +  
Sbjct: 242 LPDGAAQYYVAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY-- 299

Query: 282 GRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRG---EVATGLGKCRMLVEI 338
            +   YT     K  S     NG      + + +   + +      +    G     VE+
Sbjct: 300 -KQRPYTFLLPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESRGHVSPQVEL 358

Query: 339 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR--HECLCI--RAALLLKRKWKNDAQM 394
               LE  K       AC +  +        + R  H  +    RAA  +KRKW  D   
Sbjct: 359 P-PYLERVKQQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYD 417

Query: 395 AIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN-- 452
           A+RDC  A  ++    +AH  ++  L +L    EAL      +CLD       E+  +  
Sbjct: 418 ALRDCLKAISLNPCHLKAHFRLARCLFELKYVAEAL------ECLDDFKGKFPEQAHSSA 471

Query: 453 ---IKKHIAAAETEKNN 466
              + + I AA   KN+
Sbjct: 472 CDALGRDITAALFSKND 488

Homo sapiens (taxid: 9606)

>sp|Q80ZK9|WDTC1_MOUSE WD and tetratricopeptide repeats protein 1 OS=Mus musculus GN=Wdtc1 PE=1 SV=1

 Score =  178 bits (452), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 144/488 (29%), Positives = 212/488 (43%), Gaps = 116/488 (23%)

Query: 5   LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 64
            +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN
Sbjct: 33  FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92

Query: 65  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 124
           +F  KF+P   D ++++GA D++V + +L+                ++  HT RVK++A 
Sbjct: 93  IFSVKFLPHAGDRILITGAADSKVHVHDLT----------VKETIHMFGDHTNRVKRIAT 142

Query: 125 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAKRSLADPPK 182
               P+  WSA+EDG +RQ+D R+        S H E   +L+DL   CG          
Sbjct: 143 APMWPNTFWSAAEDGLIRQYDLRE-------NSKHSE---VLIDLTEYCGP--------- 183

Query: 183 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC----- 237
             +  K   ++    + L VG S  F RLYD RM+        R SP   V+ FC     
Sbjct: 184 -MVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMIHNHRKSM-RQSPSAGVHTFCDRQKP 241

Query: 238 --------------PMHLSEHGR--SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281
                         P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +  
Sbjct: 242 LPDGAAQYYVAGHLPVKLPDYNSRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY-- 299

Query: 282 GRAMRYTV-------------GDASKIMSFTPTLNGLEL----------------QPPIH 312
            +   YT              G  S         NGL L                Q  + 
Sbjct: 300 -KQRPYTFLLPRKCHSVEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESKGCISPQVELP 358

Query: 313 DFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR 372
            +L+  ++ +   A    +    +++   ++++  H        N +L G+         
Sbjct: 359 PYLE-RVKQQANEAFACQQWTQAIQLYSQAVQKAPH--------NAMLYGN--------- 400

Query: 373 HECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDF 432
                 RAA  +KRKW  D   A+RDC  A  ++    +AH  ++  L +L    EAL  
Sbjct: 401 ------RAAAYMKRKWDGDHYDALRDCLKAISLNPCHLKAHFRLARCLFELKYVAEAL-- 452

Query: 433 AIAAQCLD 440
               +CLD
Sbjct: 453 ----ECLD 456

Mus musculus (taxid: 10090)

>sp|Q9DC22|DCAF6_MOUSE DDB1- and CUL4-associated factor 6 OS=Mus musculus GN=Dcaf6 PE=1 SV=1

 Score =  147 bits (370), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 153/322 (47%), Gaps = 34/322 (10%)

Query: 5   LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 64
            ++RL  E  L  H GCVN I WN  G  ++SGSDDT + + +  SRK+L +I +GH AN
Sbjct: 37  FIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRAN 96

Query: 65  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 124
           +F  KF+P T D+ +VS +GD  +   N+ +       D        + CH     ++  
Sbjct: 97  IFSAKFLPCTDDKQIVSCSGDGVIFYTNIEQ-------DAETNRQCQFTCHYGTTYEIMT 149

Query: 125 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR-NILLDLRCGAKRSLADPPKQ 183
              +P+   S  EDGT+R  D R  +SC     + ++C+ +IL++ R  A      PP  
Sbjct: 150 VPNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPV- 203

Query: 184 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLS 242
                        P+ L VG SD+  R+YDRRML    T           V  F P HLS
Sbjct: 204 -------------PYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLS 250

Query: 243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 302
                S  +T + +S +G+E+L+SYS +++YL D      R ++    +  +     P +
Sbjct: 251 NK---SCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPV 307

Query: 303 NGLELQPPIHDFLQTNIRVRGE 324
             L L+    D+  T  R R E
Sbjct: 308 KRLRLR---GDWSDTGPRARPE 326

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|Q58WW2|DCAF6_HUMAN DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1

 Score =  145 bits (367), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 154/322 (47%), Gaps = 34/322 (10%)

Query: 5   LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 64
            ++RL  E  L  H GCVN I WN  G  ++SGSDDT + + +  SRK+L +I +GH AN
Sbjct: 37  FIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRAN 96

Query: 65  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 124
           +F  KF+P T+D+ +VS +GD  +   N+ +       D        + CH     ++  
Sbjct: 97  IFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQ-------DAETNRQCQFTCHYGTTYEIMT 149

Query: 125 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR-NILLDLRCGAKRSLADPPKQ 183
              +P+   S  EDGT+R  D R  +SC     + ++C+ +IL++ R  A      PP  
Sbjct: 150 VPNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPI- 203

Query: 184 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLS 242
                        P+ L VG SD+  R+YDRRML    T           V  F P HL+
Sbjct: 204 -------------PYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLN 250

Query: 243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 302
                S  +T + +S +G+E+L+SYS +++YL D      R ++    +  +     P +
Sbjct: 251 ---NKSCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPV 307

Query: 303 NGLELQPPIHDFLQTNIRVRGE 324
             L L+    D+  T  R R E
Sbjct: 308 KRLRLR---GDWSDTGPRARPE 326

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5R9B8|DCAF6_PONAB DDB1- and CUL4-associated factor 6 OS=Pongo abelii GN=DCAF6 PE=2 SV=2

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 154/322 (47%), Gaps = 34/322 (10%)

Query: 5   LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 64
            ++RL  E  L  H GCVN I WN  G  ++SGSDDT + + +  SRK+L +I +GH AN
Sbjct: 37  FIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRAN 96

Query: 65  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 124
           +F  KF+P T+D+ +VS +GD  +   N+ +       D        + CH     ++  
Sbjct: 97  IFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQ-------DAETNRQCQFTCHYGTTYEIMT 149

Query: 125 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR-NILLDLRCGAKRSLADPPKQ 183
              +P+   S  EDGT+R  D R  +SC     + ++C+ +IL++ R  A      PP  
Sbjct: 150 VPNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPI- 203

Query: 184 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLS 242
                        P+ L VG SD+  R+YDRRML    T           V  F P HL+
Sbjct: 204 -------------PYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLN 250

Query: 243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 302
                S  +T + +S +G+E+L+SYS +++YL D      R ++    +  +     P +
Sbjct: 251 ---NKSCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPV 307

Query: 303 NGLELQPPIHDFLQTNIRVRGE 324
             L L+    D+  T  R R E
Sbjct: 308 KRLRLR---GDWSDTGPRARPE 326

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|O94527|IQW1_SCHPO WD repeat protein iqw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=iqw1 PE=1 SV=1

 Score =  145 bits (365), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 175/370 (47%), Gaps = 49/370 (13%)

Query: 2   HSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS-YSSRKLLHSIETG 60
           +S+ +  +  ++EL GH GCVN + W++ G  L+SGSDDT + VW  ++  K  H I TG
Sbjct: 28  NSTWLTGIDLQKELTGHTGCVNTLDWSADGEFLLSGSDDTRLIVWDVFNEYKPRHLISTG 87

Query: 61  HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 120
           H  N+F  KFVP +++  ++S +GD  ++LF+L      G+D    T +  + C    VK
Sbjct: 88  HVQNIFSAKFVPYSNNRQILSASGDKLIKLFDLDSSKEGGMDHGMETQTRCWSCALDSVK 147

Query: 121 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180
            + V   N H     SEDGT RQ+D R+   C    +   +C +IL++          +P
Sbjct: 148 NI-VPCDNGHTFLVCSEDGTARQYDIREPHVC----NQDLDCPSILVNY---------NP 193

Query: 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP-----CVNY 235
            +  ++L +  +S + P+   +GG+  +A LYDRRM+         M+  P     CV  
Sbjct: 194 YR--INLYTITMSPSNPYYFAIGGTHPYAFLYDRRMVKKSFRDDWTMNTSPEKDCRCVRK 251

Query: 236 FCP-MHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS 293
           F P    +  G    ++T   FS  N  E+L+S++ ++VYL  V+               
Sbjct: 252 FSPDGSCNSQGILDRYITCCQFSAANPNELLVSWNSDYVYLFHVHEDK------------ 299

Query: 294 KIMSFTPTLNGLE---LQPPIHDFLQTNIRVRGEVA----TGLGKCRMLVEIARN---SL 343
              S+TPT N +E    +P     LQT    R   +       G       ++RN   + 
Sbjct: 300 ---SYTPTFNKIEDSNKKPSKPSLLQTQPLKRKNYSPWYKNNFGASTPASRVSRNPYTAA 356

Query: 344 EEGKHPYYGI 353
           +  KH +Y +
Sbjct: 357 QPRKHTFYQM 366

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5R448|DCAF8_PONAB DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1

 Score =  127 bits (318), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 143/322 (44%), Gaps = 61/322 (18%)

Query: 5   LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 64
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 179 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 238

Query: 65  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 120
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 239 VFQAKFLPNSGDSTLAMRARDGQVRVAELS----------------ATQCCKNTKRVAQH 282

Query: 121 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 175
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 283 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 322

Query: 176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 235
            +    ++ + L +  ++    H   VGG D F R+YD+R +               +  
Sbjct: 323 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI-------DENENNGVLKK 375

Query: 236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG--RAMRYTVGDAS 293
           FCP HL  +G S  ++T + +S +G E+L SY+ E +YL + +H+ G     RY      
Sbjct: 376 FCPHHLV-NGESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYVKRY------ 428

Query: 294 KIMSFTPTLNGLELQPPIHDFL 315
           K      T+ G+    P  +F+
Sbjct: 429 KGHRNNATVKGVNFYGPKSEFV 450

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q5TAQ9|DCAF8_HUMAN DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1

 Score =  124 bits (311), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 142/322 (44%), Gaps = 61/322 (18%)

Query: 5   LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 64
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 179 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 238

Query: 65  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 120
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 239 VFQAKFLPNSGDSTLAMCARDGQVRVAELS----------------ATQCCKNTKRVAQH 282

Query: 121 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 175
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 283 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 322

Query: 176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 235
            +    ++ + L +  ++    H   VGG D F R+YD+R +               +  
Sbjct: 323 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI-------DENENNGVLKK 375

Query: 236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG--RAMRYTVGDAS 293
           FCP HL  +  S  ++T + +S +G E+L SY+ E +YL + +H+ G     RY      
Sbjct: 376 FCPHHLV-NSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYVKRY------ 428

Query: 294 KIMSFTPTLNGLELQPPIHDFL 315
           K      T+ G+    P  +F+
Sbjct: 429 KGHRNNATVKGVNFYGPKSEFV 450

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5U2M6|DCAF8_RAT DDB1- and CUL4-associated factor 8 OS=Rattus norvegicus GN=Dcaf8 PE=2 SV=1

 Score =  124 bits (310), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 131/287 (45%), Gaps = 53/287 (18%)

Query: 5   LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 64
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 173 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 232

Query: 65  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 120
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 233 VFQAKFLPNSGDSTLAMCARDGQVRVAELS----------------ATQCCKNTKRVAQH 276

Query: 121 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 175
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 277 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 316

Query: 176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 235
            +    ++ + L +  ++    H   VGG D F R+YD+R +               +  
Sbjct: 317 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI-------DENENNGVLKK 369

Query: 236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 282
           FCP HL  +  S  ++T + +S +G E+L SY+ E +YL + +H+ G
Sbjct: 370 FCPHHLV-NSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 415

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q8N7N5|DCAF8_MOUSE DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1

 Score =  122 bits (307), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 142/322 (44%), Gaps = 61/322 (18%)

Query: 5   LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 64
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 173 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 232

Query: 65  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 120
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 233 VFQAKFLPNSGDSTLAMCARDGQVRVAELS----------------ATQCCKNTKRVAQH 276

Query: 121 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 175
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 277 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 316

Query: 176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 235
            +    ++ + L +  ++    H   VGG D + R+YD+R +               +  
Sbjct: 317 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQYVRIYDQRKI-------DENENNGVLKK 369

Query: 236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM--RYTVGDAS 293
           FCP HL  +  S  ++T + +S +G E+L SY+ E +YL + +H+ G     RY      
Sbjct: 370 FCPHHLV-NSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRY------ 422

Query: 294 KIMSFTPTLNGLELQPPIHDFL 315
           K      T+ G+    P  +F+
Sbjct: 423 KGHRNNATVKGVNFYGPKSEFV 444

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	732
224081993	756	predicted protein [Populus trichocarpa]	0.994	0.962	0.800	0.0
255545904	761	WD and tetratricopeptide repeat protein,	0.997	0.959	0.786	0.0
302142032	762	unnamed protein product [Vitis vinifera]	0.998	0.959	0.774	0.0
449436964	759	PREDICTED: WD and tetratricopeptide repe	0.994	0.959	0.743	0.0
334187604	754	WD and tetratricopeptide repeats protein	0.984	0.956	0.730	0.0
297811205	755	hypothetical protein ARALYDRAFT_487925 [	0.984	0.954	0.727	0.0
18416416	757	WD and tetratricopeptide repeats protein	0.986	0.953	0.726	0.0
357465333	758	DDB1- and CUL4-associated factor [Medica	0.986	0.952	0.725	0.0
356515704	762	PREDICTED: WD and tetratricopeptide repe	0.993	0.954	0.726	0.0
356508017	762	PREDICTED: WD and tetratricopeptide repe	0.993	0.954	0.723	0.0

>gi|224081993|ref|XP_002306549.1| predicted protein [Populus trichocarpa] gi|222855998|gb|EEE93545.1| predicted protein [Populus trichocarpa]

 Score = 1215 bits (3143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/732 (80%), Positives = 651/732 (88%), Gaps = 4/732 (0%)

Query: 1   MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 60
           MHSSL+RRLSQERELEGHQGCVN+I+WNSKGSLLISGSDDT +N+W+Y+ RKLLHSI+TG
Sbjct: 29  MHSSLIRRLSQERELEGHQGCVNSIAWNSKGSLLISGSDDTRMNIWNYAGRKLLHSIDTG 88

Query: 61  HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 120
           HSAN+FCTKFVPETSDELVV+GAGDAEVRLFNLSR SGR  DDN+I PSALYQCHTRRVK
Sbjct: 89  HSANIFCTKFVPETSDELVVAGAGDAEVRLFNLSRLSGRSPDDNSIAPSALYQCHTRRVK 148

Query: 121 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180
           KLAVEVGNP+VVWSASEDGTLRQHDFR+G+SCPPAGSSH ECRNILLDLR GAKRSLADP
Sbjct: 149 KLAVEVGNPNVVWSASEDGTLRQHDFREGASCPPAGSSH-ECRNILLDLRSGAKRSLADP 207

Query: 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240
           PKQTL+L+SCDIS++RPHLLLVGGSDAFARLYDRRMLPPLTSC+KRMSPPPCVNYFCPMH
Sbjct: 208 PKQTLALRSCDISTSRPHLLLVGGSDAFARLYDRRMLPPLTSCRKRMSPPPCVNYFCPMH 267

Query: 241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 300
           LSE GRSSLHLTHVTFSPNG+EVLLSYSGEHVYLM+VNH+GG A+RYT GD SK+M+F P
Sbjct: 268 LSERGRSSLHLTHVTFSPNGDEVLLSYSGEHVYLMNVNHSGGTAVRYTTGDTSKLMTFAP 327

Query: 301 TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVL 360
           TLNGLELQP      +     +   ++ L KCR LV+IA  SLEEG   +YGIEACNEVL
Sbjct: 328 TLNGLELQPLPSCVFKRQSHSKTNGSSMLEKCRRLVQIAEKSLEEGTCYFYGIEACNEVL 387

Query: 361 EGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEAL 420
           +GH   IGP LRHECLCIRAALLLKRKWKND  MAIRDC+NARRIDSSSFRA  YMSEAL
Sbjct: 388 DGHGRVIGPTLRHECLCIRAALLLKRKWKNDVHMAIRDCFNARRIDSSSFRALYYMSEAL 447

Query: 421 EQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTG 480
            +L K+KEAL+F+IAAQC  P N+ +A  +E+I+K++A A   K++K NDG  RSE R G
Sbjct: 448 SRLGKHKEALEFSIAAQCSAPGNTEVAVLMEDIRKNLATAG--KSSKENDGATRSETRNG 505

Query: 481 RVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS 540
           R LSLSDI+Y SEANS+AS DGP S+REDSDYDEE+E+DF TSV GDEGRDVE N LHGS
Sbjct: 506 RALSLSDILYHSEANSEASHDGPGSDREDSDYDEELELDFETSVSGDEGRDVEPNILHGS 565

Query: 541 LNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQ 600
           LN+RIHR+GDSAR++   NGS GSPSSS QNDR PYQPETVIDMKQRYVGHCNVGTDIKQ
Sbjct: 566 LNLRIHRKGDSARDSSCTNGSCGSPSSS-QNDRTPYQPETVIDMKQRYVGHCNVGTDIKQ 624

Query: 601 ASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDN 660
           ASFLGQRGDY+ASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNC+QCHPFDCVVATSGIDN
Sbjct: 625 ASFLGQRGDYVASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCIQCHPFDCVVATSGIDN 684

Query: 661 TIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 720
           TIKIWTPSASVPSIV+GGAAGP+T++VLEAMESNQR+L  NRE  L +ELLERF MHEF+
Sbjct: 685 TIKIWTPSASVPSIVAGGAAGPETSNVLEAMESNQRRLCHNREAILPFELLERFRMHEFT 744

Query: 721 EGSLRPFECAQS 732
           EG+L PFECAQS
Sbjct: 745 EGTLHPFECAQS 756

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545904|ref|XP_002514012.1| WD and tetratricopeptide repeat protein, putative [Ricinus communis] gi|223547098|gb|EEF48595.1| WD and tetratricopeptide repeat protein, putative [Ricinus communis]

 Score = 1214 bits (3140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/732 (78%), Positives = 647/732 (88%), Gaps = 2/732 (0%)

Query: 1   MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 60
           MHSSL+RRLSQERELEGHQGCVN+I+WNS GSLL+SGSDDT +N+WSYS RKLLHSI+TG
Sbjct: 32  MHSSLIRRLSQERELEGHQGCVNSIAWNSTGSLLVSGSDDTRMNIWSYSGRKLLHSIDTG 91

Query: 61  HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 120
           HSAN+FCTKF+PETSDELVVSGAGDAEVRLFNLSR SGRG DDNAI P ALYQCHT+RVK
Sbjct: 92  HSANIFCTKFIPETSDELVVSGAGDAEVRLFNLSRLSGRGPDDNAIAPLALYQCHTKRVK 151

Query: 121 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180
           KLAVEVGNP+VVWSASEDGTLRQHD R+ SSCPPAGSS QECRN+LLDLRCGAKRSL DP
Sbjct: 152 KLAVEVGNPNVVWSASEDGTLRQHDLREDSSCPPAGSSPQECRNVLLDLRCGAKRSLVDP 211

Query: 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240
           PKQTL+LKSCDIS+ RPHLLLVGGSDAFARLYDRRMLPPLTSC+KRM PPPCVNY CPMH
Sbjct: 212 PKQTLALKSCDISARRPHLLLVGGSDAFARLYDRRMLPPLTSCRKRMPPPPCVNYICPMH 271

Query: 241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 300
           LSE GRS LHLTHVTFSP+G+EVLLSYSGEHVYLM+VNHAGG +M+YT GDASK+M+F P
Sbjct: 272 LSERGRSGLHLTHVTFSPSGDEVLLSYSGEHVYLMNVNHAGGSSMQYTTGDASKLMTFAP 331

Query: 301 TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVL 360
            LNGLELQPP  D  +  +R +  VA+ L KCR L++ A   L++G + +YGIEACNEVL
Sbjct: 332 ILNGLELQPPPSDISKNGLRFKSYVASTLQKCRKLLQFAEKCLDDGANFFYGIEACNEVL 391

Query: 361 EGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEAL 420
           + H   I P +RH+CLC RAALLLKRKWKND  MAIRDCYNARRIDSSSFRA  YMSEAL
Sbjct: 392 DRHGRDISPAIRHDCLCTRAALLLKRKWKNDVHMAIRDCYNARRIDSSSFRALYYMSEAL 451

Query: 421 EQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTG 480
            QL KYKEALDFA+A+QC+ PS++ +AE VENIK ++A AE EK NKANDG  +SE R+G
Sbjct: 452 SQLGKYKEALDFAVASQCVAPSDTEIAEWVENIKNNLAQAEAEKTNKANDGALKSESRSG 511

Query: 481 RVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS 540
           R LSLSDI+YRSEA SD SQDGP +ERE+SDYDEE+E+DF TS+ GDEGRD+E N LHGS
Sbjct: 512 RALSLSDILYRSEATSDGSQDGP-TEREESDYDEELELDFETSISGDEGRDIEPNTLHGS 570

Query: 541 LNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQ 600
           LN+RIHRRGDS+RET   NGS GSP SSS NDR+PYQPETVIDMKQR+VGHCNVGTDIKQ
Sbjct: 571 LNLRIHRRGDSSRETSCTNGSCGSP-SSSHNDRMPYQPETVIDMKQRFVGHCNVGTDIKQ 629

Query: 601 ASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDN 660
           ASFLG+RG+Y+ASGSDDGRWFIWEKQTGRLIKMLLGDEAV+NCVQ HPFDCVVATSGIDN
Sbjct: 630 ASFLGERGEYVASGSDDGRWFIWEKQTGRLIKMLLGDEAVLNCVQSHPFDCVVATSGIDN 689

Query: 661 TIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 720
           TIKIWTP+ASVPS V+GG+AGP+T+DVL+ MESNQR+LS NRE  L +ELLERF MHEF+
Sbjct: 690 TIKIWTPTASVPSNVAGGSAGPETSDVLDVMESNQRRLSHNREVILPFELLERFRMHEFT 749

Query: 721 EGSLRPFECAQS 732
           EG+L P ECAQS
Sbjct: 750 EGTLHPLECAQS 761

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142032|emb|CBI19235.3| unnamed protein product [Vitis vinifera]

 Score = 1197 bits (3097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/732 (77%), Positives = 643/732 (87%), Gaps = 1/732 (0%)

Query: 1   MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 60
           MHSSL+RRL+QE ELEGHQGCVN ++WNS+GSLLISGSDDT IN+W+Y SRKLLH IETG
Sbjct: 32  MHSSLLRRLTQEGELEGHQGCVNTVAWNSRGSLLISGSDDTRINIWNYPSRKLLHCIETG 91

Query: 61  HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 120
           HSAN+FC KF+PETSDELV SGAGDAEVRLF+LSR SGRG D+NAITPSAL+QCHTRRVK
Sbjct: 92  HSANIFCAKFIPETSDELVASGAGDAEVRLFHLSRLSGRGPDENAITPSALFQCHTRRVK 151

Query: 121 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180
           KLAVEVGNP+VVWSASEDGTLRQHDFR+G+SCPPAGSSHQECRN+LLDLRCGAK+SLADP
Sbjct: 152 KLAVEVGNPNVVWSASEDGTLRQHDFREGASCPPAGSSHQECRNVLLDLRCGAKKSLADP 211

Query: 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240
           PKQ LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC K M+PPPCVNYFCPMH
Sbjct: 212 PKQCLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCGKTMTPPPCVNYFCPMH 271

Query: 241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 300
           LS+HGRSSLHLTHVTFSPNGEEVL+SYS EHVYLMDVNHA G  + Y  GDA K+M+ +P
Sbjct: 272 LSDHGRSSLHLTHVTFSPNGEEVLISYSAEHVYLMDVNHACGSTVCYAPGDALKLMNPSP 331

Query: 301 TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVL 360
            L+G+    P+ D    +  ++  +A  L KCR LV+ A   L+EG   +YGIEACNEVL
Sbjct: 332 ILDGIGFGSPVSDAFTYDFSMKSNIAAKLDKCRKLVQFAERCLKEGTDYFYGIEACNEVL 391

Query: 361 EGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEAL 420
           +GH   IGP L+H+CLC RAALLLKRKWKNDA MAIRDC  ARRID+SSF+A  YMSEAL
Sbjct: 392 DGHPHEIGPTLKHDCLCTRAALLLKRKWKNDAHMAIRDCNRARRIDTSSFKALFYMSEAL 451

Query: 421 EQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTG 480
            QL K+KEAL+FA+A+QCL P +S +AE+VE+IKKH+AAAE EK+NK+NDG  RSE R+G
Sbjct: 452 LQLNKHKEALEFAVASQCLAPYDSEVAERVEDIKKHLAAAEAEKSNKSNDGVPRSETRSG 511

Query: 481 RVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS 540
           R LSLS+I+YRSEANSDASQDGPRSEREDSDYDEE+E+DF TSV GDEGRDVE+N LHGS
Sbjct: 512 RFLSLSEILYRSEANSDASQDGPRSEREDSDYDEELELDFETSVSGDEGRDVESNILHGS 571

Query: 541 LNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQ 600
           LN+RIHRR DSARET   NG+ GSP +SS+ND+  YQPET IDMKQRYVGHCN+GTDIKQ
Sbjct: 572 LNLRIHRRCDSARETSGTNGACGSP-TSSRNDKTTYQPETAIDMKQRYVGHCNIGTDIKQ 630

Query: 601 ASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDN 660
           ASFLG RG+Y+ASGSDDGRWFIW+K+TGRLIKML+GDE VVNCVQCHPFDC VATSGIDN
Sbjct: 631 ASFLGCRGEYVASGSDDGRWFIWDKRTGRLIKMLMGDEHVVNCVQCHPFDCTVATSGIDN 690

Query: 661 TIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 720
           TIKIWTPSA +PSIV+GGAAGP+TADVLEAME+NQRKL RNR+  L +ELLERF MH+F 
Sbjct: 691 TIKIWTPSAPIPSIVAGGAAGPETADVLEAMENNQRKLCRNRDAILPFELLERFRMHDFG 750

Query: 721 EGSLRPFECAQS 732
           EG+L PFEC+QS
Sbjct: 751 EGTLHPFECSQS 762

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436964|ref|XP_004136262.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Cucumis sativus] gi|449497029|ref|XP_004160293.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Cucumis sativus]

 Score = 1129 bits (2921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/732 (74%), Positives = 620/732 (84%), Gaps = 4/732 (0%)

Query: 1   MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 60
           MHSS ++RLSQE+ELEGHQGCVNA++WNS+GSLLISGSDDT IN+WSYS RKLLHS++TG
Sbjct: 32  MHSSFIQRLSQEKELEGHQGCVNAVAWNSRGSLLISGSDDTRINIWSYSGRKLLHSVDTG 91

Query: 61  HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 120
           HSAN+FCTKFVPE SD+LV+SGAGDAEVRLFNLSR  GRG DDN I PSALY+CH RRVK
Sbjct: 92  HSANIFCTKFVPEMSDDLVLSGAGDAEVRLFNLSRLRGRGQDDNPIAPSALYRCHARRVK 151

Query: 121 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180
           KLAVE+GNP+VVWSASEDGTLRQHDFR+G SCPP G+SHQEC N+LLDLRCGAKRSLADP
Sbjct: 152 KLAVEIGNPNVVWSASEDGTLRQHDFREGMSCPPDGASHQECHNVLLDLRCGAKRSLADP 211

Query: 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240
           P+QTL+LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL+S QKRMSPPPCV+YFCPMH
Sbjct: 212 PRQTLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSSQKRMSPPPCVSYFCPMH 271

Query: 241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 300
           LS+  RS LHLTHVTFSPNGEE+LLSYSGEHVYLM+VNH G   M+YT GD SK+MSFTP
Sbjct: 272 LSDRVRSGLHLTHVTFSPNGEEILLSYSGEHVYLMNVNHGGLGTMQYTSGDVSKLMSFTP 331

Query: 301 TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVL 360
            LNG ELQ  + +      R        L + R L++IA   LE G + + GIEACNE+L
Sbjct: 332 VLNGFELQHHVSNLSNNGSRFNLTSIFQLDRSRKLLQIAEKCLEGGNY-FGGIEACNEIL 390

Query: 361 EGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEAL 420
           +G+   IG +L+H+ LC RAALLLKRKWKND  MAIRDCY+AR+ID SSFRAH YM EAL
Sbjct: 391 DGNGRNIGVILKHDSLCTRAALLLKRKWKNDVHMAIRDCYSARKIDHSSFRAHYYMCEAL 450

Query: 421 EQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTG 480
            QL ++KEALDFA AAQCL PSNS +AEKVE+IK+ +AAAE EK+NK NDG  +S P  G
Sbjct: 451 SQLGRHKEALDFAFAAQCLAPSNSEVAEKVESIKRDLAAAELEKSNKGNDGALKSAP-LG 509

Query: 481 RVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS 540
            VLSLSD +YRS+ANSD SQDG RSEREDSDYDEEVE+DF T + GDE  DV++N LHGS
Sbjct: 510 GVLSLSDFLYRSDANSDVSQDGLRSEREDSDYDEEVELDFET-LSGDESHDVDSNVLHGS 568

Query: 541 LNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQ 600
           LN+RIHRR D +RE V  NGS GSP SSSQND   YQPE VIDMKQRYVGHCN+GTDIKQ
Sbjct: 569 LNLRIHRRIDPSRERVGPNGSCGSP-SSSQNDATLYQPEPVIDMKQRYVGHCNIGTDIKQ 627

Query: 601 ASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDN 660
           ASFLGQ+G+Y+ASGSDDGRWFIWEK+TGRLIK+L+GD AVVNCVQ HPFDC +ATSGIDN
Sbjct: 628 ASFLGQKGEYVASGSDDGRWFIWEKETGRLIKILVGDGAVVNCVQSHPFDCAIATSGIDN 687

Query: 661 TIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 720
           TIK+WTP+A VPS+V+GGA GP  ADVL  +E+NQR+L RNRE  L +E+LERF MH+FS
Sbjct: 688 TIKLWTPTAPVPSVVAGGAVGPQEADVLAVIENNQRRLCRNREAILPFEILERFRMHDFS 747

Query: 721 EGSLRPFECAQS 732
           EGSL PFECAQS
Sbjct: 748 EGSLHPFECAQS 759

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187604|ref|NP_001190286.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana] gi|8979728|emb|CAB96849.1| putative protein [Arabidopsis thaliana] gi|332004229|gb|AED91612.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana]

 Score = 1101 bits (2848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/734 (73%), Positives = 614/734 (83%), Gaps = 13/734 (1%)

Query: 1   MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 60
            HSSLVRRLSQE+ELEGHQGCVNA++WNS GSLLISGSDD  IN+W+YSSRKLLHSI+TG
Sbjct: 32  FHSSLVRRLSQEQELEGHQGCVNALAWNSNGSLLISGSDDLRINIWNYSSRKLLHSIDTG 91

Query: 61  HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 120
           H+AN+FCTKFVPETSDELVVSGAGDAEVRLFN SR SGR  DDNAI PSALYQCHTRRVK
Sbjct: 92  HTANIFCTKFVPETSDELVVSGAGDAEVRLFNTSRLSGRAEDDNAIIPSALYQCHTRRVK 151

Query: 121 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180
           KLAVE GNP+VVWSASEDGTLRQHDFR+ +SCPPAG++HQECR++LLDLR GAKR+LADP
Sbjct: 152 KLAVEPGNPNVVWSASEDGTLRQHDFRESTSCPPAGTAHQECRSVLLDLRSGAKRALADP 211

Query: 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240
           PKQTLSLKSCDIS+TRPHLLLVGGSDAFARLYDRRMLPPL S +KRM PPPCVNYFCPMH
Sbjct: 212 PKQTLSLKSCDISATRPHLLLVGGSDAFARLYDRRMLPPLASSRKRMPPPPCVNYFCPMH 271

Query: 241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 300
           LSE GR++LHLTHVTFSPNGEEVLLSYSGEHVYLM+VN+  G  M+YT GD   + SF+ 
Sbjct: 272 LSERGRTNLHLTHVTFSPNGEEVLLSYSGEHVYLMNVNNGTG-IMQYTPGDVDNLFSFSN 330

Query: 301 TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVL 360
            L+ +E  P +    Q         AT + KC  LVEIA+ SLEEG   +Y IEA NEVL
Sbjct: 331 NLHDVESPPQVSTTPQNGFHRSSNAAT-VKKCTELVEIAKWSLEEGTDVFYAIEAANEVL 389

Query: 361 EGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEAL 420
           + H + I   LRHECLC RAALLLKRKWKNDA MA+RDC+NARRID+SSF+AH YMSEAL
Sbjct: 390 DAHSNDIESALRHECLCTRAALLLKRKWKNDAHMAVRDCHNARRIDASSFKAHYYMSEAL 449

Query: 421 EQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTG 480
           +QL K KEALDFA AAQ ++PS++ +  KVE+IK+ + AA  EKN +   G       T 
Sbjct: 450 QQLGKCKEALDFATAAQHMNPSDADIVAKVESIKRDLQAAGAEKNEETGAG-------TT 502

Query: 481 RVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS 540
           RVLSLSDI+YRSEANSD+S D  RSEREDSDYDEE+E+D  TS+  DEGRD ++N + GS
Sbjct: 503 RVLSLSDILYRSEANSDSSHDMSRSEREDSDYDEELELDIQTSLSDDEGRDTDSNSMRGS 562

Query: 541 LNVRIHRRGDSA--RETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDI 598
           LN+RIHR GD      TVD N SSG+ +SSSQNDR  YQPE  IDMK+RYVGHCNVGTDI
Sbjct: 563 LNLRIHRVGDDKPMENTVD-NASSGT-ASSSQNDRTSYQPEGAIDMKRRYVGHCNVGTDI 620

Query: 599 KQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGI 658
           KQASFLGQRG+YIASGSDDGRWFIWEKQTGRL+K+L+GDE+V+NC+QCHPFD VVATSGI
Sbjct: 621 KQASFLGQRGEYIASGSDDGRWFIWEKQTGRLMKVLVGDESVLNCIQCHPFDSVVATSGI 680

Query: 659 DNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHE 718
           DNTIKIW+P+ASVPSIV+GG+AGP TA+V+E MESNQ+KLSRNRE+ LS EL++RF M E
Sbjct: 681 DNTIKIWSPTASVPSIVAGGSAGPATANVVEVMESNQQKLSRNRENPLSVELMQRFRMQE 740

Query: 719 FSEGSLRPFECAQS 732
           F+EG+  PFEC QS
Sbjct: 741 FAEGNFHPFECTQS 754

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811205|ref|XP_002873486.1| hypothetical protein ARALYDRAFT_487925 [Arabidopsis lyrata subsp. lyrata] gi|297319323|gb|EFH49745.1| hypothetical protein ARALYDRAFT_487925 [Arabidopsis lyrata subsp. lyrata]

 Score = 1101 bits (2848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/735 (72%), Positives = 618/735 (84%), Gaps = 14/735 (1%)

Query: 1   MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 60
           +HSSLVRRLSQE+ELEGHQGCVN ++WNS GSLLISGSDD  IN+W+YSSR LLHSI+TG
Sbjct: 32  LHSSLVRRLSQEQELEGHQGCVNTLAWNSNGSLLISGSDDLRINIWNYSSRTLLHSIDTG 91

Query: 61  HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 120
           H+AN+FCTKFVPETSDELVVSGAGDAEVRLFNLS  SGR  DDNAITPSALYQCHTRRVK
Sbjct: 92  HTANIFCTKFVPETSDELVVSGAGDAEVRLFNLSHLSGRAEDDNAITPSALYQCHTRRVK 151

Query: 121 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180
           KLAVE GNP+VVWSASEDGTLRQHDFR+ +SCPPAG++HQECR++LLDLR GAKR+LADP
Sbjct: 152 KLAVEPGNPNVVWSASEDGTLRQHDFRESTSCPPAGTAHQECRSVLLDLRSGAKRALADP 211

Query: 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240
           PKQTLSLKSCDIS+TRPHLLLVGGSDAFARLYDRRMLPPLTS +KRM PPPCVNYFCPMH
Sbjct: 212 PKQTLSLKSCDISATRPHLLLVGGSDAFARLYDRRMLPPLTSSRKRMPPPPCVNYFCPMH 271

Query: 241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 300
           LS+ GR++LHLTHVTFSPNGEEVLLSYSGEHVYLM+VN+  G  ++YT GD   + SF+ 
Sbjct: 272 LSDRGRTNLHLTHVTFSPNGEEVLLSYSGEHVYLMNVNNGTG-ILQYTQGDVDNLFSFSN 330

Query: 301 TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVL 360
            L+ +E  P +    Q         AT + KC  LVEIA+ SLEEG   +Y IEA NEVL
Sbjct: 331 NLHDVEYPPQVSTTPQNGFHRNCNAAT-VKKCTELVEIAKRSLEEGTDVFYAIEAANEVL 389

Query: 361 EGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEAL 420
           +GH + I   LRHECLC RAALLLKRKWKNDA MA+RDC+NAR+ID+SSF+AH YMSEAL
Sbjct: 390 DGHSNDIDSALRHECLCTRAALLLKRKWKNDAHMAVRDCHNARKIDASSFKAHYYMSEAL 449

Query: 421 EQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTG 480
           +QL + KEALDFA AAQ L+PS++ +  KVE+IK+ + AA +EKN +   G       T 
Sbjct: 450 QQLGRCKEALDFANAAQHLNPSDADIVAKVESIKRDLQAAGSEKNEETGAG-------TT 502

Query: 481 RVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS 540
           RVLSLSDI+YRSEANSD+S D  RSEREDSDYDEE+E+D  TS+  DEGRD E+N + GS
Sbjct: 503 RVLSLSDILYRSEANSDSSHDMSRSEREDSDYDEELELDIQTSLSDDEGRDPESNAMRGS 562

Query: 541 LNVRIHRRGDSAR---ETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTD 597
           LN+RIHR GD  +    TVD N SSG+ +SSSQNDR  YQPE  IDMK+RYVGHCNVGTD
Sbjct: 563 LNLRIHRVGDDDKPMENTVD-NASSGT-ASSSQNDRTSYQPEGAIDMKRRYVGHCNVGTD 620

Query: 598 IKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSG 657
           IKQASFLGQRG+YIASGSDDGRWFIWEKQTGRL+K+L+GDEAV+NC+QCHPFD VVATSG
Sbjct: 621 IKQASFLGQRGEYIASGSDDGRWFIWEKQTGRLMKVLVGDEAVLNCIQCHPFDSVVATSG 680

Query: 658 IDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMH 717
           IDNTIKIW+P+ASVPS+V+GG+AGP TA+V+E MESNQ+KLSRNRE+ LS EL++RF M 
Sbjct: 681 IDNTIKIWSPTASVPSVVAGGSAGPATANVVEVMESNQQKLSRNRENPLSVELMQRFRMQ 740

Query: 718 EFSEGSLRPFECAQS 732
           EF+EG+  PFEC QS
Sbjct: 741 EFAEGNFHPFECTQS 755

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416416|ref|NP_568242.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana] gi|14532680|gb|AAK64141.1| unknown protein [Arabidopsis thaliana] gi|23297429|gb|AAN12885.1| unknown protein [Arabidopsis thaliana] gi|332004228|gb|AED91611.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana]

 Score = 1097 bits (2836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/736 (72%), Positives = 613/736 (83%), Gaps = 14/736 (1%)

Query: 1   MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 60
            HSSLVRRLSQE+ELEGHQGCVNA++WNS GSLLISGSDD  IN+W+YSSRKLLHSI+TG
Sbjct: 32  FHSSLVRRLSQEQELEGHQGCVNALAWNSNGSLLISGSDDLRINIWNYSSRKLLHSIDTG 91

Query: 61  HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 120
           H+AN+FCTKFVPETSDELVVSGAGDAEVRLFN SR SGR  DDNAI PSALYQCHTRRVK
Sbjct: 92  HTANIFCTKFVPETSDELVVSGAGDAEVRLFNTSRLSGRAEDDNAIIPSALYQCHTRRVK 151

Query: 121 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180
           KLAVE GNP+VVWSASEDGTLRQHDFR+ +SCPPAG++HQECR++LLDLR GAKR+LADP
Sbjct: 152 KLAVEPGNPNVVWSASEDGTLRQHDFRESTSCPPAGTAHQECRSVLLDLRSGAKRALADP 211

Query: 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240
           PKQTLSLKSCDIS+TRPHLLLVGGSDAFARLYDRRMLPPL S +KRM PPPCVNYFCPMH
Sbjct: 212 PKQTLSLKSCDISATRPHLLLVGGSDAFARLYDRRMLPPLASSRKRMPPPPCVNYFCPMH 271

Query: 241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA--GGRAMRYTVGDASKIMSF 298
           LSE GR++LHLTHVTFSPNGEEVLLSYSGEHVYLM+VN+       M+YT GD   + SF
Sbjct: 272 LSERGRTNLHLTHVTFSPNGEEVLLSYSGEHVYLMNVNNGICSTGIMQYTPGDVDNLFSF 331

Query: 299 TPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNE 358
           +  L+ +E  P +    Q     R   A  + KC  LVEIA+ SLEEG   +Y IEA NE
Sbjct: 332 SNNLHDVESPPQVSTTPQNGFH-RSSNAATVKKCTELVEIAKWSLEEGTDVFYAIEAANE 390

Query: 359 VLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSE 418
           VL+ H + I   LRHECLC RAALLLKRKWKNDA MA+RDC+NARRID+SSF+AH YMSE
Sbjct: 391 VLDAHSNDIESALRHECLCTRAALLLKRKWKNDAHMAVRDCHNARRIDASSFKAHYYMSE 450

Query: 419 ALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPR 478
           AL+QL K KEALDFA AAQ ++PS++ +  KVE+IK+ + AA  EKN +   G       
Sbjct: 451 ALQQLGKCKEALDFATAAQHMNPSDADIVAKVESIKRDLQAAGAEKNEETGAG------- 503

Query: 479 TGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLH 538
           T RVLSLSDI+YRSEANSD+S D  RSEREDSDYDEE+E+D  TS+  DEGRD ++N + 
Sbjct: 504 TTRVLSLSDILYRSEANSDSSHDMSRSEREDSDYDEELELDIQTSLSDDEGRDTDSNSMR 563

Query: 539 GSLNVRIHRRGDSA--RETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGT 596
           GSLN+RIHR GD      TVD N SSG+ +SSSQNDR  YQPE  IDMK+RYVGHCNVGT
Sbjct: 564 GSLNLRIHRVGDDKPMENTVD-NASSGT-ASSSQNDRTSYQPEGAIDMKRRYVGHCNVGT 621

Query: 597 DIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATS 656
           DIKQASFLGQRG+YIASGSDDGRWFIWEKQTGRL+K+L+GDE+V+NC+QCHPFD VVATS
Sbjct: 622 DIKQASFLGQRGEYIASGSDDGRWFIWEKQTGRLMKVLVGDESVLNCIQCHPFDSVVATS 681

Query: 657 GIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHM 716
           GIDNTIKIW+P+ASVPSIV+GG+AGP TA+V+E MESNQ+KLSRNRE+ LS EL++RF M
Sbjct: 682 GIDNTIKIWSPTASVPSIVAGGSAGPATANVVEVMESNQQKLSRNRENPLSVELMQRFRM 741

Query: 717 HEFSEGSLRPFECAQS 732
            EF+EG+  PFEC QS
Sbjct: 742 QEFAEGNFHPFECTQS 757

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465333|ref|XP_003602948.1| DDB1- and CUL4-associated factor [Medicago truncatula] gi|355491996|gb|AES73199.1| DDB1- and CUL4-associated factor [Medicago truncatula]

 Score = 1088 bits (2814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/735 (72%), Positives = 615/735 (83%), Gaps = 13/735 (1%)

Query: 2   HSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH 61
           HSSL+RRLSQE+ELEGH GCVNAI+WNSKGSLL+SGSDDT INVWSY+ +KL+HSI+TGH
Sbjct: 33  HSSLIRRLSQEKELEGHLGCVNAIAWNSKGSLLVSGSDDTRINVWSYAGQKLVHSIDTGH 92

Query: 62  SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK 121
           +AN+FCTKF+PETSDELV SGAGDAEVRLFN SR SG GL+DN ITPSALYQCHTRRVKK
Sbjct: 93  TANIFCTKFIPETSDELVASGAGDAEVRLFNRSRVSGNGLNDNPITPSALYQCHTRRVKK 152

Query: 122 LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 181
           L VE GNP+VVWSASEDGTLRQHDFR+G+SCPPAGS  QEC N+LLDLR GAKRSL DPP
Sbjct: 153 L-VENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSPRQECHNVLLDLRNGAKRSLGDPP 211

Query: 182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 241
           KQ L+LKS DISSTRPHLLLVGGSDAFARLYDRRMLPPL+SC KRM PPPCVNYFCPMHL
Sbjct: 212 KQVLALKSFDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCGKRMPPPPCVNYFCPMHL 271

Query: 242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 301
           S+ G  SLHLTHVTFSP+G EVLLSYSGEHVYLM+VNHAG   ++Y+ GD SK+M+++P+
Sbjct: 272 SDRGHPSLHLTHVTFSPDGSEVLLSYSGEHVYLMNVNHAGVNEVQYSSGDVSKLMTYSPS 331

Query: 302 LNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLE 361
           +NGLELQP + +        +  +   L KCR L++  + SL+EG  PYYGIEACNEVL 
Sbjct: 332 VNGLELQPFVSNVFTNGFHTKKNITAKLDKCRKLIKYGKKSLDEGA-PYYGIEACNEVLI 390

Query: 362 GHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALE 421
           G+   IGP L+ ECLC RAALLLKRKWKNDA MAIRDC+ AR+ D S+++   YMSEAL 
Sbjct: 391 GYNHIIGPALKQECLCTRAALLLKRKWKNDAHMAIRDCHAARKFDKSAYKPLYYMSEALS 450

Query: 422 QLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGR 481
           QL K+KEALDFA+A+  L PS S +AE+VEN KK I  AETEKN+K N+G      R GR
Sbjct: 451 QLGKHKEALDFAVASHSLAPSKSEVAERVENAKKDIVLAETEKNSKTNNG------RGGR 504

Query: 482 VLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSL 541
           +LSLSDI+YRSEANSD SQDG RS+R+DSDY+EE+E+DF TSV GDE  D ++N LH SL
Sbjct: 505 MLSLSDILYRSEANSDTSQDGQRSDRDDSDYEEEMELDFETSVSGDEEHDSDSNILHRSL 564

Query: 542 NVRIHRRGDSARETVDA--NGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIK 599
           N+RIHRRGDS RE V+A  +  S S SSSSQN R  YQPE  IDMKQR++GHCNVGTDIK
Sbjct: 565 NLRIHRRGDS-RENVEASGSDESPSSSSSSQNGRASYQPEAAIDMKQRFIGHCNVGTDIK 623

Query: 600 QASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGID 659
           QA+FLGQ+G+Y+ASGSDDGRWFIWEK+TGRL+K+L GDE+VVNCVQCHPFD VVATSGID
Sbjct: 624 QANFLGQKGEYVASGSDDGRWFIWEKRTGRLMKLLSGDESVVNCVQCHPFDFVVATSGID 683

Query: 660 NTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEF 719
           NTIKIWTPSA V S V+GG+AGP+T DVL AME+NQ+KLSRNR+  L +ELLE F MHEF
Sbjct: 684 NTIKIWTPSAPVASSVAGGSAGPETGDVLGAMENNQQKLSRNRDSMLPFELLEPFRMHEF 743

Query: 720 SEGS--LRPFECAQS 732
            EGS  LRPFECAQ+
Sbjct: 744 PEGSLRLRPFECAQT 758

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515704|ref|XP_003526538.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Glycine max]

 Score = 1085 bits (2806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/734 (72%), Positives = 620/734 (84%), Gaps = 7/734 (0%)

Query: 2   HSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH 61
           HSSL+RRLSQERELEGH GCVNA++WNSKGSLLISGSDD  IN+WSYS  KLLHSI+TGH
Sbjct: 33  HSSLIRRLSQERELEGHTGCVNAVAWNSKGSLLISGSDDQRINIWSYSGWKLLHSIDTGH 92

Query: 62  SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI-TPSALYQCHTRRVK 120
           +AN+FCTKF+PETSDELV SGAGDAEVRLFNLSR +G G  DNAI  PSA YQCHTRRVK
Sbjct: 93  TANIFCTKFIPETSDELVASGAGDAEVRLFNLSRLNGSGFSDNAIIAPSAYYQCHTRRVK 152

Query: 121 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180
           KLAVE GNP+VVWSASEDGTLRQHDFR+G+SCPPAGSSHQECRNILLDLR G+KRSLADP
Sbjct: 153 KLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGSKRSLADP 212

Query: 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240
           PKQ L+LKSCDISST+PHLLLVGGSDAFARLYDRRMLPPL+SCQKRMSPPPCVNYFCPMH
Sbjct: 213 PKQVLALKSCDISSTKPHLLLVGGSDAFARLYDRRMLPPLSSCQKRMSPPPCVNYFCPMH 272

Query: 241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 300
           LS+ G  SLHLTHVTFSP+G EVLLSYSGEHVYLM+VNHAG + M+YT GD SK+M+++P
Sbjct: 273 LSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHVYLMNVNHAGVKEMQYTSGDESKLMTYSP 332

Query: 301 TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVL 360
           T+NG E+QP + +       ++  +A  L KCR  ++ A+ SL+ G  PYYGI+ACNEVL
Sbjct: 333 TINGSEMQPCVSNVFPNRFPIKKNIAAKLDKCRKQIKYAKKSLDNGI-PYYGIDACNEVL 391

Query: 361 EGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEAL 420
            G+   IGP L+HECLC RAALL+KRKWKNDA MAIRDCY AR ID+SS++A  YMSEAL
Sbjct: 392 NGYSHIIGPALKHECLCTRAALLVKRKWKNDAHMAIRDCYAARIIDNSSYKALYYMSEAL 451

Query: 421 EQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTG 480
            QL ++++AL+FA+A+  L PS S +AE+V N+K+ IA AE EKN++ NDG +R + R G
Sbjct: 452 SQLGRHEDALEFAVASHSLAPSKSEVAERVANVKRDIALAEAEKNSQTNDGASRFDSRGG 511

Query: 481 RVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS 540
           R+LSLSDI+Y  E+NSD   DG RSER+DSDYD+E+E+DF TS+ GDEG D+E+N LHG+
Sbjct: 512 RILSLSDILYCPESNSDDPHDGSRSERDDSDYDDELELDFETSISGDEGHDLESNILHGN 571

Query: 541 LNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQ 600
           LN+RIH RGDS R+  DA+GS  SPSSSSQN R  YQPE  +DMKQR+VGHCN+GTDIKQ
Sbjct: 572 LNLRIHGRGDS-RDNADASGSCESPSSSSQNSRTSYQPEPAVDMKQRFVGHCNIGTDIKQ 630

Query: 601 ASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDN 660
           ASFLGQRG+Y+ASGSDDGRWFIWEK TGRLIKML GDE+VVNCVQCHPFD VVATSGID+
Sbjct: 631 ASFLGQRGEYVASGSDDGRWFIWEKCTGRLIKMLSGDESVVNCVQCHPFDFVVATSGIDS 690

Query: 661 TIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 720
           TIKIWTP+A VPS V+GG+AGP+T DVL AMESNQ+KLSR+  H+    LLE F   +F 
Sbjct: 691 TIKIWTPTAPVPSSVAGGSAGPETGDVLVAMESNQQKLSRS--HNSILPLLESFRRQDFP 748

Query: 721 EGSLR--PFECAQS 732
           EGSLR  PFECAQS
Sbjct: 749 EGSLRLHPFECAQS 762

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508017|ref|XP_003522759.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Glycine max]

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/734 (72%), Positives = 615/734 (83%), Gaps = 7/734 (0%)

Query: 2   HSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH 61
           HSSL+RRLSQE ELEGH GCVNA++WNSKGS+LISGSDD  IN+WSYS  KLLHSI+TGH
Sbjct: 33  HSSLIRRLSQETELEGHTGCVNAVAWNSKGSILISGSDDLRINIWSYSGWKLLHSIDTGH 92

Query: 62  SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI-TPSALYQCHTRRVK 120
           +AN+FCTKF+PETSDELV SGAGDA VRLFNLSR SG G  DNAI  PSA YQCHTRRVK
Sbjct: 93  TANIFCTKFIPETSDELVASGAGDAGVRLFNLSRLSGSGFSDNAIIAPSAHYQCHTRRVK 152

Query: 121 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180
           KLAVE GNP+VVWSASEDGTLRQHDFR+G+SCPPAGSSHQECRNILLDLR G+KRSLADP
Sbjct: 153 KLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGSKRSLADP 212

Query: 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240
           PKQ L+LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL+SC KRMSPPPCVNYFCPMH
Sbjct: 213 PKQVLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCWKRMSPPPCVNYFCPMH 272

Query: 241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 300
           LS+HG  SLHLTHVTFSP+G EVLLSYSGEHVYLM+VNHAG   M+YT GD SK+M+++P
Sbjct: 273 LSDHGHPSLHLTHVTFSPDGHEVLLSYSGEHVYLMNVNHAGVNEMQYTSGDNSKLMTYSP 332

Query: 301 TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVL 360
           T+NG E+QP + +       ++  +A  L KCR L++ A+ SL+ G  PYYGI+ACNEVL
Sbjct: 333 TINGTEMQPCVSNVFPNGFPIKKNIAAKLDKCRKLIKYAKKSLDNGT-PYYGIDACNEVL 391

Query: 361 EGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEAL 420
            G+   IGP L+HECLC RAALL+KRKWKNDA M IRDCY AR ID+SS++A  YMSEAL
Sbjct: 392 NGYSHIIGPALKHECLCTRAALLVKRKWKNDAHMVIRDCYAAREIDNSSYKALYYMSEAL 451

Query: 421 EQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTG 480
            QL ++++AL+FA+A+  L PS S +AE+V N+K+ IA AE EK++K NDG +R + R G
Sbjct: 452 SQLGRHEDALEFAVASHSLAPSKSEVAERVANVKRDIALAEAEKSSKTNDGASRFDSRGG 511

Query: 481 RVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS 540
           R+LSLSDI+YR  +N D  QDG R ER+DSDYDEE+E+DF TS+ GDE  D+E+N LHGS
Sbjct: 512 RILSLSDILYRPGSNGDPPQDGSRLERDDSDYDEELELDFETSISGDEEHDLESNILHGS 571

Query: 541 LNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQ 600
           LN+RIHRRGDS R+   A+GS  SPSSSSQN R  YQPE  +DMKQR+VGHCN+GTDIKQ
Sbjct: 572 LNLRIHRRGDS-RDNARASGSCESPSSSSQNSRTSYQPEPAVDMKQRFVGHCNIGTDIKQ 630

Query: 601 ASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDN 660
           ASFLGQRG+Y+ASGSDDGRW+IWEK+TGRLIKML GDE+VVNCVQCHPFD VVATSGID+
Sbjct: 631 ASFLGQRGEYVASGSDDGRWYIWEKRTGRLIKMLNGDESVVNCVQCHPFDFVVATSGIDS 690

Query: 661 TIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 720
           TIKIWTP+A VPS V+GG+AGP+T DVL AMESNQ+KLSR+    L +  LE F M EF 
Sbjct: 691 TIKIWTPNAPVPSSVAGGSAGPETGDVLVAMESNQQKLSRSHNSILPF--LEPFRMQEFP 748

Query: 721 EGS--LRPFECAQS 732
           EG   LRPFECAQS
Sbjct: 749 EGPLRLRPFECAQS 762

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	732
TAIR|locus:2183735	757	ASG2 "AT5G10940" [Arabidopsis	0.984	0.952	0.692	1.3e-272
UNIPROTKB|Q8N5D0	677	WDTC1 "WD and tetratricopeptid	0.565	0.611	0.298	8.2e-65
UNIPROTKB|E2RA21	679	WDTC1 "Uncharacterized protein	0.565	0.609	0.298	8.5e-65
MGI|MGI:2685541	677	Wdtc1 "WD and tetratricopeptid	0.341	0.369	0.344	1.2e-64
UNIPROTKB|B6CVL4	678	WDTC1 "Uncharacterized protein	0.565	0.610	0.298	1.4e-64
RGD|1310362	676	Wdtc1 "WD and tetratricopeptid	0.341	0.369	0.341	2.7e-64
UNIPROTKB|E1C4X5	671	WDTC1 "Uncharacterized protein	0.349	0.381	0.327	6.6e-63
FB|FBgn0000057	628	adp "adipose" [Drosophila mela	0.154	0.179	0.508	1.2e-57
POMBASE|SPBC609.03	809	iqw1 "WD repeat protein, Iqw1"	0.394	0.357	0.312	5.5e-49
UNIPROTKB|F1NU19	825	F1NU19 "Uncharacterized protei	0.244	0.216	0.338	6.4e-46

TAIR|locus:2183735 ASG2 "AT5G10940" [Arabidopsis thaliana (taxid:3702)]

 Score = 2621 (927.7 bits), Expect = 1.3e-272, P = 1.3e-272
 Identities = 509/735 (69%), Positives = 582/735 (79%)

Query:     2 HSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH 61
             HSSLVRRLSQE+ELEGHQGCVNA++WNS GSLLISGSDD  IN+W+YSSRKLLHSI+TGH
Sbjct:    33 HSSLVRRLSQEQELEGHQGCVNALAWNSNGSLLISGSDDLRINIWNYSSRKLLHSIDTGH 92

Query:    62 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK 121
             +AN+FCTKFVPETSDELVVSGAGDAEVRLFN SR SGR  DDNAI PSALYQCHTRRVKK
Sbjct:    93 TANIFCTKFVPETSDELVVSGAGDAEVRLFNTSRLSGRAEDDNAIIPSALYQCHTRRVKK 152

Query:   122 LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 181
             LAVE GNP+VVWSASEDGTLRQHDFR+ +SCPPAG++HQECR++LLDLR GAKR+LADPP
Sbjct:   153 LAVEPGNPNVVWSASEDGTLRQHDFRESTSCPPAGTAHQECRSVLLDLRSGAKRALADPP 212

Query:   182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 241
             KQTLSLKSCDIS+TRPHLLLVGGSDAFARLYDRRMLPPL S +KRM PPPCVNYFCPMHL
Sbjct:   213 KQTLSLKSCDISATRPHLLLVGGSDAFARLYDRRMLPPLASSRKRMPPPPCVNYFCPMHL 272

Query:   242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA--GGRAMRYTVGDASKIMSFT 299
             SE GR++LHLTHVTFSPNGEEVLLSYSGEHVYLM+VN+       M+YT GD   + SF+
Sbjct:   273 SERGRTNLHLTHVTFSPNGEEVLLSYSGEHVYLMNVNNGICSTGIMQYTPGDVDNLFSFS 332

Query:   300 PTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEV 359
               L+ +E  P +    Q         AT + KC  LVEIA+ SLEEG   +Y IEA NEV
Sbjct:   333 NNLHDVESPPQVSTTPQNGFHRSSNAAT-VKKCTELVEIAKWSLEEGTDVFYAIEAANEV 391

Query:   360 LEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEA 419
             L+ H + I   LRHECLC RAALLLKRKWKNDA MA+RDC+NARRID+SSF+AH YMSEA
Sbjct:   392 LDAHSNDIESALRHECLCTRAALLLKRKWKNDAHMAVRDCHNARRIDASSFKAHYYMSEA 451

Query:   420 LEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIXXXXXXXXXXXXDGGARSEPRT 479
             L+QL K KEALDFA AAQ ++PS++ +  KVE+IK+ +             G       T
Sbjct:   452 LQQLGKCKEALDFATAAQHMNPSDADIVAKVESIKRDLQAAGAEKNEETGAG-------T 504

Query:   480 GRVLSLSDIIYRSEANSDASQDGPXXXXXXXXXXXXXXXXFHTSVPGDEGRDVEANFLHG 539
              RVLSLSDI+YRSEANSD+S D                    TS+  DEGRD ++N + G
Sbjct:   505 TRVLSLSDILYRSEANSDSSHDMSRSEREDSDYDEELELDIQTSLSDDEGRDTDSNSMRG 564

Query:   540 SLNVRIHRRGDSA--RETVDANXXXXXXXXXXQNDRIPYQPETVIDMKQRYVGHCNVGTD 597
             SLN+RIHR GD      TVD            QNDR  YQPE  IDMK+RYVGHCNVGTD
Sbjct:   565 SLNLRIHRVGDDKPMENTVD--NASSGTASSSQNDRTSYQPEGAIDMKRRYVGHCNVGTD 622

Query:   598 IKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSG 657
             IKQASFLGQRG+YIASGSDDGRWFIWEKQTGRL+K+L+GDE+V+NC+QCHPFD VVATSG
Sbjct:   623 IKQASFLGQRGEYIASGSDDGRWFIWEKQTGRLMKVLVGDESVLNCIQCHPFDSVVATSG 682

Query:   658 IDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMH 717
             IDNTIKIW+P+ASVPSIV+GG+AGP TA+V+E MESNQ+KLSRNRE+ LS EL++RF M 
Sbjct:   683 IDNTIKIWSPTASVPSIVAGGSAGPATANVVEVMESNQQKLSRNRENPLSVELMQRFRMQ 742

Query:   718 EFSEGSLRPFECAQS 732
             EF+EG+  PFEC QS
Sbjct:   743 EFAEGNFHPFECTQS 757

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

UNIPROTKB|Q8N5D0 WDTC1 "WD and tetratricopeptide repeats protein 1" [Homo sapiens (taxid:9606)]

 Score = 427 (155.4 bits), Expect = 8.2e-65, Sum P(2) = 8.2e-65
 Identities = 140/469 (29%), Positives = 210/469 (44%)

Query:     6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGA---KRSLADP 180
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGQLVEAKCLTVN 193

Query:   181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 236
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   237 C----PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG 290
                  P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +   +   YT  
Sbjct:   251 VAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY---KQRPYTFL 307

Query:   291 DASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE---VATGLGKCRMLVEIARNSLEEGK 347
                K  S     NG      + + +   + +      +    G     VE+    LE  K
Sbjct:   308 LPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESRGHVSPQVELPPY-LERVK 366

Query:   348 HPYYGIEACNEVLEG-HL-SGIGPMLRHECLCI--RAALLLKRKWKNDAQMAIRDCYNAR 403
                    AC +  +   L S       H  +    RAA  +KRKW  D   A+RDC  A 
Sbjct:   367 QQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAI 426

Query:   404 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 452
              ++    +AH  ++  L +L KY      A A +CLD       E+  +
Sbjct:   427 SLNPCHLKAHFRLARCLFEL-KY-----VAEALECLDDFKGKFPEQAHS 469

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0055082 "cellular chemical homeostasis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E2RA21 WDTC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 427 (155.4 bits), Expect = 8.5e-65, Sum P(2) = 8.5e-65
 Identities = 140/469 (29%), Positives = 210/469 (44%)

Query:     6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGA---KRSLADP 180
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGQLVEAKCLTVN 193

Query:   181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 236
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   237 C----PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG 290
                  P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +   +   YT  
Sbjct:   251 VAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY---KQRPYTFL 307

Query:   291 DASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE---VATGLGKCRMLVEIARNSLEEGK 347
                K  S     NG      + + +   + +      +    G     VE+    LE  K
Sbjct:   308 LPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPENRGHVSPQVELPPY-LERVK 366

Query:   348 HPYYGIEACNEVLEG-HL-SGIGPMLRHECLCI--RAALLLKRKWKNDAQMAIRDCYNAR 403
                    AC +  +   L S       H  +    RAA  +KRKW  D   A+RDC  A 
Sbjct:   367 QQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAI 426

Query:   404 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 452
              ++    +AH  ++  L +L KY      A A +CLD       E+  +
Sbjct:   427 SLNPCHLKAHFRLARCLFEL-KY-----VAEALECLDDFKGKFPEQAHS 469

GO:0055082 "cellular chemical homeostasis" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

MGI|MGI:2685541 Wdtc1 "WD and tetratricopeptide repeats 1" [Mus musculus (taxid:10090)]

 Score = 375 (137.1 bits), Expect = 1.2e-64, Sum P(3) = 1.2e-64
 Identities = 100/290 (34%), Positives = 148/290 (51%)

Query:     6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAK---RSLADP 180
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGPMVEAKCLTVN 193

Query:   181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 236
             P+    L    + ++ P + L             R  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMRQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   237 C----PMHLSEHGRSSLHL---THVTFSPNGEEVLLSYSGEHVYLMDVNH 279
                  P+ L ++  S L +   T+VTFSPNG E+L++  GE VYL D+ +
Sbjct:   251 VAGHLPVKLPDYN-SRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY 299

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0004857 "enzyme inhibitor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006006 "glucose metabolic process" evidence=IMP

GO:0008361 "regulation of cell size" evidence=IMP

GO:0032869 "cellular response to insulin stimulus" evidence=IMP

GO:0035264 "multicellular organism growth" evidence=IMP

GO:0042393 "histone binding" evidence=IPI

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0043086 "negative regulation of catalytic activity" evidence=IDA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IMP;IDA

GO:0055082 "cellular chemical homeostasis" evidence=IMP

UNIPROTKB|B6CVL4 WDTC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 427 (155.4 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
 Identities = 140/469 (29%), Positives = 210/469 (44%)

Query:     6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGA---KRSLADP 180
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGQLVEAKCLTVN 193

Query:   181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 236
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   237 C----PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG 290
                  P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +   +   YT  
Sbjct:   251 VAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY---KQRPYTFL 307

Query:   291 DASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE---VATGLGKCRMLVEIARNSLEEGK 347
                K  S     NG      + + +   + +      +    G     VE+    LE  K
Sbjct:   308 LPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESRGHVSPQVELPPY-LERVK 366

Query:   348 HPYYGIEACNEVLEG-HL-SGIGPMLRHECLCI--RAALLLKRKWKNDAQMAIRDCYNAR 403
                    AC +  +   L S       H  +    RAA  +KRKW  D   A+RDC  A 
Sbjct:   367 QQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAI 426

Query:   404 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 452
              ++    +AH  ++  L +L KY      A A +CLD       E+  +
Sbjct:   427 SLNPCHLKAHFRLARCLFEL-KY-----VAEALECLDDFKGKFPEQAHS 469

GO:0055082 "cellular chemical homeostasis" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

RGD|1310362 Wdtc1 "WD and tetratricopeptide repeats 1" [Rattus norvegicus (taxid:10116)]

 Score = 372 (136.0 bits), Expect = 2.7e-64, Sum P(3) = 2.7e-64
 Identities = 99/290 (34%), Positives = 148/290 (51%)

Query:     6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAK---RSLADP 180
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGPMVEAKCLTVN 193

Query:   181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 236
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   237 C----PMHLSEHGRSSLHL---THVTFSPNGEEVLLSYSGEHVYLMDVNH 279
                  P+ L ++  S L +   T+VTFSPNG E+L++  GE VYL D+ +
Sbjct:   251 VAGHLPVKLPDYN-SRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY 299

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0004857 "enzyme inhibitor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006006 "glucose metabolic process" evidence=IEA;ISO

GO:0008361 "regulation of cell size" evidence=IEA;ISO

GO:0032869 "cellular response to insulin stimulus" evidence=IEA;ISO

GO:0035264 "multicellular organism growth" evidence=IEA;ISO

GO:0042393 "histone binding" evidence=IEA;ISO

GO:0042826 "histone deacetylase binding" evidence=IEA;ISO

GO:0043086 "negative regulation of catalytic activity" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA;ISO

GO:0055082 "cellular chemical homeostasis" evidence=IEA;ISO

UNIPROTKB|E1C4X5 WDTC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 363 (132.8 bits), Expect = 6.6e-63, Sum P(3) = 6.6e-63
 Identities = 93/284 (32%), Positives = 143/284 (50%)

Query:     6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125
             F  KF+P + D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHSGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 185
                P+  WSA+EDG +RQ+D R+ S          E    L++ +C     L   P+   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSKRSEVLIDLTEYCGQLVEAKC-----LTVNPQDNN 198

Query:   186 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYFC---- 237
              L    + ++ P + L             +  P     T C ++   P     Y+     
Sbjct:   199 YLA---VGASGPFVRLYDIRMIHNHRKSMKQCPSAGVHTFCDRQKPLPDGAAQYYVAGHL 255

Query:   238 PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279
             P+ L ++      L  T+VTFSP+G E+L++  GE VYL D+ +
Sbjct:   256 PVKLPDYNNRLRVLVATYVTFSPDGTELLVNMGGEQVYLFDLTY 299

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0055082 "cellular chemical homeostasis" evidence=IEA

FB|FBgn0000057 adp "adipose" [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 1.2e-57, Sum P(3) = 1.2e-57
 Identities = 61/120 (50%), Positives = 81/120 (67%)

Query:   580 TVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEA 639
             T  D  QRYVGHCNV TDIK+A++LG +G++IA+GSDDG  +IWE  TG++  +   D A
Sbjct:   498 TARDYMQRYVGHCNVTTDIKEANYLGSQGEFIAAGSDDGNMYIWEGDTGKIRAVYRADSA 557

Query:   640 VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPD-TADVLEAMESNQRKL 698
             +VNCVQ HP  C++ATSGID+ IKIW+P A+           P+  ADV   +E NQ K+
Sbjct:   558 IVNCVQPHPSICMLATSGIDHNIKIWSPCAA------SAEERPNLVADVTRFVEDNQEKM 611

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=IMP;TAS

GO:0009269 "response to desiccation" evidence=IMP

GO:0010891 "negative regulation of sequestering of triglyceride" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0010883 "regulation of lipid storage" evidence=IMP

POMBASE|SPBC609.03 iqw1 "WD repeat protein, Iqw1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 372 (136.0 bits), Expect = 5.5e-49, Sum P(2) = 5.5e-49
 Identities = 99/317 (31%), Positives = 162/317 (51%)

Query:     2 HSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS-YSSRKLLHSIETG 60
             +S+ +  +  ++EL GH GCVN + W++ G  L+SGSDDT + VW  ++  K  H I TG
Sbjct:    28 NSTWLTGIDLQKELTGHTGCVNTLDWSADGEFLLSGSDDTRLIVWDVFNEYKPRHLISTG 87

Query:    61 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 120
             H  N+F  KFVP +++  ++S +GD  ++LF+L      G+D    T +  + C    VK
Sbjct:    88 HVQNIFSAKFVPYSNNRQILSASGDKLIKLFDLDSSKEGGMDHGMETQTRCWSCALDSVK 147

Query:   121 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180
              + V   N H     SEDGT RQ+D R+   C    +   +C +IL++          +P
Sbjct:   148 NI-VPCDNGHTFLVCSEDGTARQYDIREPHVC----NQDLDCPSILVNY---------NP 193

Query:   181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP-----CVNY 235
              +  ++L +  +S + P+   +GG+  +A LYDRRM+         M+  P     CV  
Sbjct:   194 YR--INLYTITMSPSNPYYFAIGGTHPYAFLYDRRMVKKSFRDDWTMNTSPEKDCRCVRK 251

Query:   236 FCPM-HLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDA 292
             F P    +  G    ++T   FS  N  E+L+S++ ++VYL  V+        +  + D+
Sbjct:   252 FSPDGSCNSQGILDRYITCCQFSAANPNELLVSWNSDYVYLFHVHEDKSYTPTFNKIEDS 311

Query:   293 SKIMSFTPTLNGLELQP 309
             +K  S  P+L  L+ QP
Sbjct:   312 NKKPS-KPSL--LQTQP 325

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0043234 "protein complex" evidence=NAS

UNIPROTKB|F1NU19 F1NU19 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 6.4e-46, Sum P(3) = 6.4e-46
 Identities = 65/192 (33%), Positives = 98/192 (51%)

Query:     6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
             ++RL  E  L  H GCVN I WN  G  ++SGSDDT++ + +  SRK+L +I +GH AN+
Sbjct:     5 IQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTNLVITNPYSRKVLTTIRSGHRANI 64

Query:    66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125
             F  KF+P T+D+ +VS +GD  +   N+ +       D        Y CH     ++   
Sbjct:    65 FSAKFLPCTNDKQIVSCSGDGVIFYTNVEQ-------DAETNRQCQYTCHYGTTYEIMTV 117

Query:   126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN-ILLDLRCGAKRSLADPPKQT 184
               +P+   S  EDGT+R  D R  +SC     + ++C++ IL++ R  A      PP   
Sbjct:   118 PNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPIPY 172

Query:   185 LSLKSCDISSTR 196
                  C  SS R
Sbjct:   173 YLAVGCSDSSVR 184

GO:0005634 "nucleus" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.4660.1 hypothetical protein (756 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	732
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	8e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.003
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.004
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.004
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 82.8 bits (205), Expect = 3e-17
 Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 48/219 (21%)

Query: 10  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
              R L+GH G V  ++ ++ G+ L SGS D  I +W   + + + ++ TGH++ V    
Sbjct: 42  ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVA 100

Query: 70  FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 129
           F P     ++ S + D  ++++++                   + HT  V  +A      
Sbjct: 101 FSP--DGRILSSSSRDKTIKVWDVETG----------KCLTTLRGHTDWVNSVAFSPDGT 148

Query: 130 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 189
            V  S+S+DGT++  D R G                                  TL+  +
Sbjct: 149 FVA-SSSQDGTIKLWDLRTGK------------------------------CVATLTGHT 177

Query: 190 CDISSTRPH----LLLVGGSDAFARLYDRRMLPPLTSCQ 224
            +++S         LL   SD   +L+D      L + +
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 14/130 (10%)

Query: 13  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
             L GH G VN+++++  G  L+S S D  I +W  S+ K L ++  GH   V    F P
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-RGHENGVNSVAFSP 229

Query: 73  ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132
                L+ SG+ D  +R+++L                     HT  V  LA       + 
Sbjct: 230 --DGYLLASGSEDGTIRVWDLRTGE----------CVQTLSGHTNSVTSLAWSPDGKRLA 277

Query: 133 WSASEDGTLR 142
            S S DGT+R
Sbjct: 278 -SGSADGTIR 286

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 72.4 bits (178), Expect = 8e-14
 Identities = 55/258 (21%), Positives = 91/258 (35%), Gaps = 69/258 (26%)

Query: 13  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
           R L+GH G V  ++++  G LL +GS D  I VW   + +LL ++  GH+  V       
Sbjct: 3   RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASA 61

Query: 73  ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132
                 + SG+ D  +RL++L   +G  +             HT  V  +A    +  ++
Sbjct: 62  --DGTYLASGSSDKTIRLWDLE--TGECVRT--------LTGHTSYVSSVAF-SPDGRIL 108

Query: 133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 192
            S+S D T++  D   G                                  TL   +  +
Sbjct: 109 SSSSRDKTIKVWDVETGK------------------------------CLTTLRGHTDWV 138

Query: 193 SSTRPH----LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248
           +S         +     D   +L+D             +    CV      H  E     
Sbjct: 139 NSVAFSPDGTFVASSSQDGTIKLWD-------------LRTGKCV-ATLTGHTGE----- 179

Query: 249 LHLTHVTFSPNGEEVLLS 266
             +  V FSP+GE++L S
Sbjct: 180 --VNSVAFSPDGEKLLSS 195

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 14/140 (10%)

Query: 11  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 70
               L GH   VN+++++  G+ + S S D  I +W   + K + ++ TGH+  V    F
Sbjct: 127 CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAF 185

Query: 71  VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 130
            P    E ++S + D  ++L++LS                  + H   V  +A       
Sbjct: 186 SP--DGEKLLSSSSDGTIKLWDLSTGK----------CLGTLRGHENGVNSVAFSPDGYL 233

Query: 131 VVWSASEDGTLRQHDFRQGS 150
           +  S SEDGT+R  D R G 
Sbjct: 234 LA-SGSEDGTIRVWDLRTGE 252

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 15  LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 74
           L GH+  VN+++++  G LL SGS+D  I VW   + + + ++ +GH+ +V    + P+ 
Sbjct: 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSPDG 273

Query: 75  SDELVVSGAGDAEVRLFN 92
               + SG+ D  +R+++
Sbjct: 274 KR--LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 70/319 (21%), Positives = 110/319 (34%), Gaps = 60/319 (18%)

Query: 11  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRKLLHSIETGHSANVFCTK 69
               L GH+  + +I+++  G LL+SGS D  I +W   +  KL+ S+E  H ++V    
Sbjct: 57  SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 70  F-VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 128
              P+ +  L+ S + D  V+L++LS                  + H+  V  LA     
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLS---------TPGKLIRTLEGHSESVTSLAFSPDG 167

Query: 129 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 188
             +   +S DGT++  D R G                          +LA       SL 
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPL----------------------STLAGHTDPVSSL- 204

Query: 189 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM--------- 239
               S     L+  G SD   RL+D      L S     S    V+ F P          
Sbjct: 205 --AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS-DSVVSSFSPDGSLLASGSS 261

Query: 240 --------------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 285
                          L      S  +  V FSP+G+ +    S   V L D+      + 
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321

Query: 286 RYTVGDASKIMSFTPTLNG 304
               G    + S + + +G
Sbjct: 322 LTLKGHEGPVSSLSFSPDG 340

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 583 DMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVN 642
           ++ +   GH     D+  ++     G Y+ASGS D    +W+ +TG  ++ L G  + V+
Sbjct: 42  ELLRTLKGHTGPVRDVAASAD----GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97

Query: 643 CVQCHPFDCVVATSGIDNTIKIW 665
            V   P   ++++S  D TIK+W
Sbjct: 98  SVAFSPDGRILSSSSRDKTIKVW 120

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           +   GH +    +   +F    G  ++S S D    +W+ +TG+ +  L G    VN V 
Sbjct: 87  RTLTGHTS---YVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142

Query: 646 CHPFDCVVATSGIDNTIKIW 665
             P    VA+S  D TIK+W
Sbjct: 143 FSPDGTFVASSSQDGTIKLW 162

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
           G  +A+GS DG   +W+ +TG L++ L G    V  V        +A+   D TI++W
Sbjct: 21  GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 13/139 (9%)

Query: 14  ELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
            L GH    V++ S +  GSLL SGS D  I +W   S   L    +GHS++V    F P
Sbjct: 237 TLSGHSDSVVSSFSPD--GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294

Query: 73  ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132
               +L+ SG+ D  VRL++L            +  S   + H   V  L+       +V
Sbjct: 295 --DGKLLASGSSDGTVRLWDLE--------TGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344

Query: 133 WSASEDGTLRQHDFRQGSS 151
              S+DGT+R  D R G  
Sbjct: 345 SGGSDDGTIRLWDLRTGKP 363

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 44/157 (28%), Positives = 62/157 (39%), Gaps = 14/157 (8%)

Query: 10  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCT 68
           S  R L GH   V +++++  G LL SGS D  + +W   + KLL S+   GH   V   
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334

Query: 69  KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 128
            F P+ S  LV  G+ D  +RL++L             T   L                +
Sbjct: 335 SFSPDGSL-LVSGGSDDGTIRLWDLR------------TGKPLKTLEGHSNVLSVSFSPD 381

Query: 129 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165
             VV S S DGT+R  D   GS             ++
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSL 418

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 67/292 (22%), Positives = 101/292 (34%), Gaps = 58/292 (19%)

Query: 13  RELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           R LEGH   V +++++  G LL SGS  D  I +W   + K L ++  GH+  V    F 
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFS 207

Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+    L+ SG+ D  +RL++LS               +    H+  V       G+   
Sbjct: 208 PD-GGLLIASGSSDGTIRLWDLS---------TGKLLRSTLSGHSDSVVSSFSPDGSLLA 257

Query: 132 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 191
             S S DGT+R  D R  SS     S H                          S+ S  
Sbjct: 258 --SGSSDGTIRLWDLRSSSSLLRTLSGHSS------------------------SVLSVA 291

Query: 192 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 251
            S     LL  G SD   RL+D                         + L  H      +
Sbjct: 292 FSPD-GKLLASGSSDGTVRLWDLETGKL----------------LSSLTLKGHEGP---V 331

Query: 252 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 303
           + ++FSP+G  ++   S +    +     G              +SF+P   
Sbjct: 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGR 383

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 597 DIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATS 656
            +   +F    G ++AS S DG   +W+ +TG+ +  L G    VN V   P    + +S
Sbjct: 137 WVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS 195

Query: 657 GIDNTIKIWTPSA 669
             D TIK+W  S 
Sbjct: 196 SSDGTIKLWDLST 208

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
           G  +ASGS+DG   +W+ +TG  ++ L G    V  +   P    +A+   D TI+IW
Sbjct: 231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 6   VRRLSQERELEGHQGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSAN 64
           +R       L GH   V++++++  G LLI SGS D  I +W  S+ KLL S  +GHS +
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244

Query: 65  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 124
           V  + F P     L+ SG+ D  +RL++L   S         +       H+  V  +A 
Sbjct: 245 V-VSSFSP--DGSLLASGSSDGTIRLWDLRSSS---------SLLRTLSGHSSSVLSVAF 292

Query: 125 EVGNPHVVWSASEDGTLRQHDFRQGSS 151
              +  ++ S S DGT+R  D   G  
Sbjct: 293 S-PDGKLLASGSSDGTVRLWDLETGKL 318

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 47
             R L+GH G V +++++  G+LL SGSDD  + VW 
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 47
             + L+GH G V +++++  G  L SGSDD  I +W 
Sbjct: 3  ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 44/137 (32%), Positives = 64/137 (46%), Gaps = 16/137 (11%)

Query: 7   RRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
            +L     L+GH+G V+++S++  GS L+  GSDD  I +W   + K L ++E     NV
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS--NV 373

Query: 66  FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125
               F P+    +V SG+ D  VRL++LS  S     D           HT RV  L   
Sbjct: 374 LSVSFSPDG--RVVSSGSTDGTVRLWDLSTGSLLRNLD----------GHTSRVTSLDFS 421

Query: 126 VGNPHVVWSASEDGTLR 142
                +  S S D T+R
Sbjct: 422 PDGKSLA-SGSSDNTIR 437

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
           + S S DG   +W+  TG+ +  L G E  VN V   P   ++A+   D TI++W
Sbjct: 192 LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 627 TGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
           +G L+K L G    V  V   P    +A+   D TIK+W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 608 GDYIASGSDDGRWFIWE-KQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
           G  +ASGS DG   +W+ + +  L++ L G  + V  V   P   ++A+   D T+++W
Sbjct: 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 628 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
           G+L++ L G    V  V   P   ++A+   D T+++W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKML--LGDEAVVNCVQCHPFDCVVATSG-IDNTIKI 664
           G  +ASGS DG   +W+ +TG+L+  L   G E  V+ +   P   ++ + G  D TI++
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355

Query: 665 W 665
           W
Sbjct: 356 W 356

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.5 bits (93), Expect = 0.003
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 587 RYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQC 646
              GH      +   SF       ++ GSDDG   +W+ +TG+ +K L G   V   V  
Sbjct: 323 TLKGHEGP---VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSF 378

Query: 647 HPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT 684
            P   VV++   D T+++W  S         G     T
Sbjct: 379 SPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVT 416

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 13  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 47
           + L GH   V +++W+  G  L SGS D  I +W 
Sbjct: 255 QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 0.004
 Identities = 21/80 (26%), Positives = 37/80 (46%)

Query: 597 DIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATS 656
            +   +F    G  IASGS DG   +W+  TG+L++  L   +        P   ++A+ 
Sbjct: 200 PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASG 259

Query: 657 GIDNTIKIWTPSASVPSIVS 676
             D TI++W   +S   + +
Sbjct: 260 SSDGTIRLWDLRSSSSLLRT 279

Length = 466

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 374 ECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFA 433
           +     AA   K       + A+ D   A  +D  + +A+  +  A  +L KY+EAL+  
Sbjct: 35  DAYYNLAAAYYK---LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91

Query: 434 IAAQCLDPS 442
             A  LDP+
Sbjct: 92  EKALELDPN 100

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	732
KOG1310	758	consensus WD40 repeat protein [General function pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG1334	559	consensus WD40 repeat protein [General function pr	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG0643	327	consensus Translation initiation factor 3, subunit	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.91
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG4227	609	consensus WD40 repeat protein [General function pr	99.89
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.89
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.88
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG0641	350	consensus WD40 repeat protein [General function pr	99.87
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.87
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG4328	498	consensus WD40 protein [Function unknown]	99.86
KOG2096	420	consensus WD40 repeat protein [General function pr	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG1274	933	consensus WD40 repeat protein [General function pr	99.83
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.83
KOG1963	792	consensus WD40 repeat protein [General function pr	99.83
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.83
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.82
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
KOG2048	691	consensus WD40 repeat protein [General function pr	99.82
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.8
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.8
KOG0639	705	consensus Transducin-like enhancer of split protei	99.8
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.78
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.77
KOG2055	514	consensus WD40 repeat protein [General function pr	99.76
COG2319	466	FOG: WD40 repeat [General function prediction only	99.76
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.76
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.75
KOG4328	498	consensus WD40 protein [Function unknown]	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.72
KOG1273	405	consensus WD40 repeat protein [General function pr	99.72
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.72
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.7
KOG1188	376	consensus WD40 repeat protein [General function pr	99.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.69
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.68
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.68
PRK11028	330	6-phosphogluconolactonase; Provisional	99.67
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.67
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.66
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.66
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.66
KOG1963	792	consensus WD40 repeat protein [General function pr	99.65
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.65
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.65
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.64
COG2319	466	FOG: WD40 repeat [General function prediction only	99.64
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.62
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.62
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.61
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.6
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.6
PRK01742	429	tolB translocation protein TolB; Provisional	99.57
KOG0649	325	consensus WD40 repeat protein [General function pr	99.56
PRK01742	429	tolB translocation protein TolB; Provisional	99.54
KOG4227	609	consensus WD40 repeat protein [General function pr	99.53
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.53
KOG1310	758	consensus WD40 repeat protein [General function pr	99.53
PRK11028	330	6-phosphogluconolactonase; Provisional	99.52
KOG0649	325	consensus WD40 repeat protein [General function pr	99.52
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.51
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.5
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.49
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.48
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.48
KOG2139	445	consensus WD40 repeat protein [General function pr	99.47
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.45
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.43
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.42
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.41
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.41
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.41
PRK04922	433	tolB translocation protein TolB; Provisional	99.41
PRK03629	429	tolB translocation protein TolB; Provisional	99.4
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.39
PRK05137	435	tolB translocation protein TolB; Provisional	99.39
PRK02889	427	tolB translocation protein TolB; Provisional	99.39
KOG2321	703	consensus WD40 repeat protein [General function pr	99.39
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.35
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.34
PRK03629	429	tolB translocation protein TolB; Provisional	99.32
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.31
KOG1334	559	consensus WD40 repeat protein [General function pr	99.31
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.3
KOG2139	445	consensus WD40 repeat protein [General function pr	99.3
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.27
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.25
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.21
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.19
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.18
PRK05137	435	tolB translocation protein TolB; Provisional	99.18
PRK00178	430	tolB translocation protein TolB; Provisional	99.16
PRK04792	448	tolB translocation protein TolB; Provisional	99.15
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.14
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.14
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.13
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.12
PRK04922	433	tolB translocation protein TolB; Provisional	99.12
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.1
PRK02889	427	tolB translocation protein TolB; Provisional	99.09
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.08
KOG2321	703	consensus WD40 repeat protein [General function pr	99.06
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.06
PRK01029	428	tolB translocation protein TolB; Provisional	99.03
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.03
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.0
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.99
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.99
KOG2314	698	consensus Translation initiation factor 3, subunit	98.99
KOG2315	566	consensus Predicted translation initiation factor	98.99
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.98
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.97
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.96
KOG4547	541	consensus WD40 repeat-containing protein [General	98.95
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.92
KOG4547	541	consensus WD40 repeat-containing protein [General	98.82
PRK00178	430	tolB translocation protein TolB; Provisional	98.82
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.81
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.81
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.8
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.79
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.74
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.73
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.72
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.72
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.71
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.7
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.7
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.69
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.67
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.65
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.64
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.64
PRK04792	448	tolB translocation protein TolB; Provisional	98.64
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.64
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.61
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.58
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.57
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.55
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.54
PRK04043	419	tolB translocation protein TolB; Provisional	98.54
KOG2315	566	consensus Predicted translation initiation factor	98.52
PRK01029	428	tolB translocation protein TolB; Provisional	98.52
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.43
COG4946	668	Uncharacterized protein related to the periplasmic	98.4
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.37
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.36
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.33
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.33
KOG2695	425	consensus WD40 repeat protein [General function pr	98.33
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.31
COG4946	668	Uncharacterized protein related to the periplasmic	98.31
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.28
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.28
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.24
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.23
KOG2695	425	consensus WD40 repeat protein [General function pr	98.2
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.14
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.12
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.11
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.07
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.04
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.03
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.96
PRK04043	419	tolB translocation protein TolB; Provisional	97.95
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.91
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.9
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.9
KOG2314	698	consensus Translation initiation factor 3, subunit	97.84
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.83
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.78
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.77
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.73
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.68
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.66
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.62
KOG3621	726	consensus WD40 repeat-containing protein [General	97.6
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.56
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.55
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.3
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.3
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.26
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.14
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.11
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.02
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.99
PRK02888	635	nitrous-oxide reductase; Validated	96.98
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.89
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.88
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.76
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.58
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.58
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.51
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.5
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.43
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.42
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.36
COG3391	381	Uncharacterized conserved protein [Function unknow	96.34
KOG3621	726	consensus WD40 repeat-containing protein [General	96.27
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.25
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.18
PRK02888	635	nitrous-oxide reductase; Validated	96.16
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.16
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.13
KOG2444	238	consensus WD40 repeat protein [General function pr	96.08
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.93
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.85
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.8
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.72
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.65
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.59
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.57
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.55
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.49
KOG2444	238	consensus WD40 repeat protein [General function pr	95.44
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.3
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.24
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.2
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.16
KOG2395	644	consensus Protein involved in vacuole import and d	94.96
PHA02713	557	hypothetical protein; Provisional	94.95
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.84
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.68
KOG2395	644	consensus Protein involved in vacuole import and d	94.62
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.57
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.5
COG3391	381	Uncharacterized conserved protein [Function unknow	94.45
PRK13616	591	lipoprotein LpqB; Provisional	94.45
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.43
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.29
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.11
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.98
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.95
PRK13616	591	lipoprotein LpqB; Provisional	93.74
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.65
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.09
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.09
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	92.89
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.58
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.45
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.4
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	92.35
PHA03098	534	kelch-like protein; Provisional	92.19
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.16
PHA02713	557	hypothetical protein; Provisional	92.14
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.1
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.95
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.92
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.41
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.23
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.08
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.0
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.84
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.69
PHA02790	480	Kelch-like protein; Provisional	90.47
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.2
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	88.66
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	88.54
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	88.52
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	88.25
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	87.75
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	87.28
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.77
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	86.67
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	86.62
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	86.15
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	85.72
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.55
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	85.43
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	85.1
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	84.48
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	84.29
PHA03098	534	kelch-like protein; Provisional	83.92
KOG2247	615	consensus WD40 repeat-containing protein [General	83.9
PF14727	418	PHTB1_N: PTHB1 N-terminus	83.82
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	83.82
PF14727	418	PHTB1_N: PTHB1 N-terminus	83.12
COG5167	776	VID27 Protein involved in vacuole import and degra	82.75
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	82.59
PHA02790	480	Kelch-like protein; Provisional	82.42
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	82.23
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	82.11
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	81.35
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	80.73

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8.8e-58  Score=443.88  Aligned_cols=695  Identities=37%  Similarity=0.522  Sum_probs=504.4

Q ss_pred             CchhhhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEE
Q 004745            1 MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV   80 (732)
Q Consensus         1 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~   80 (732)
                      +++.|++++.+.++|+||++.|+|+.|+.||.+|++|+.|-.+.|||.-..+.++.+..+|...|++++|.|..++.+++
T Consensus        32 ~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~  111 (758)
T KOG1310|consen   32 GNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVL  111 (758)
T ss_pred             cccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEE
Confidence            36789999999999999999999999999999999999999999999999999999989999999999999988778999


Q ss_pred             EEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004745           81 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        81 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  160 (732)
                      ||+.|..|+++|+...++...+....++.+.+.+|...|..|+..|++++.|.++++||+|+.+|++.+..+......+.
T Consensus       112 sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~  191 (758)
T KOG1310|consen  112 SGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS  191 (758)
T ss_pred             eccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH
Confidence            99999999999999876666666666778889999999999999999999999999999999999999776543332222


Q ss_pred             ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC-CCCCCcccccCCCCC----Ccccc
Q 004745          161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPP----PCVNY  235 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~-~~~~~~~~~~~~~~~----~~~~~  235 (732)
                      .+....               .......++..+|...++|++|+.|...++||.+ ..++...-......|    .|+++
T Consensus       192 ~l~ny~---------------~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~y  256 (758)
T KOG1310|consen  192 ILVNYN---------------PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRY  256 (758)
T ss_pred             HHHHhc---------------hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhe
Confidence            222111               1224778999999999999999999999999954 334443333333333    48999


Q ss_pred             cccccc-ccCCCccc---cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCC-------CCceee-----ec
Q 004745          236 FCPMHL-SEHGRSSL---HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD-------ASKIMS-----FT  299 (732)
Q Consensus       236 ~~~~~~-~~~~~~~~---~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~~~~-----~~  299 (732)
                      |.|.++ .+.+....   -++-++|+|+|..|++.-..-.|++||+...+.+...+..-+       .+..+.     ++
T Consensus       257 f~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~~~~~~~~~~~~~~lfT~~~~~s  336 (758)
T KOG1310|consen  257 FSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLPIEDSNKKPSKPSLLFTQPLKRS  336 (758)
T ss_pred             ecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecCcccccccCCCCcchhhccccccc
Confidence            999998 33331111   257789999999898888888999999999776655443311       000111     11


Q ss_pred             ---cCCCC---ccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccch
Q 004745          300 ---PTLNG---LELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRH  373 (732)
Q Consensus       300 ---~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  373 (732)
                         +..+.   ...+...++-+|.        ++.......+.....|.+++|....+.+.....+..-+..........
T Consensus       337 N~lh~~en~~~~~tP~sr~hrsp~--------~a~~~~~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~  408 (758)
T KOG1310|consen  337 NYLHWYENNFGASTPASRVHRSPY--------TAAQPRFYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAI  408 (758)
T ss_pred             cccccccCCccccCCccccccCcc--------cccccchhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchh
Confidence               11110   1111222222222        566667888889999999998877776666555555554444333334


Q ss_pred             hhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHH
Q 004745          374 ECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI  453 (732)
Q Consensus       374 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  453 (732)
                      .++.+.+.....|.|+++.+++++||+.++.+++..++++|++.+++..+++..++..+.-..+.-+|........|..+
T Consensus       409 ~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l  488 (758)
T KOG1310|consen  409 YLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCL  488 (758)
T ss_pred             HHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhcc
Confidence            58889999999999999999999999999999999999999999999999999999999988888888654444455555


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccc
Q 004745          454 KKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVE  533 (732)
Q Consensus       454 ~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~  533 (732)
                      ++.+-.+...+.-..-.       ...++......+.+....-..+-+.......+...+++.+|+.+...+.+..+...
T Consensus       489 ~rDi~aa~~~~~~e~~~-------~~~ri~t~~~~~~r~~~~~~~~~~~~~l~s~d~~~e~e~p~d~qts~vds~~R~dd  561 (758)
T KOG1310|consen  489 PRDISAALFSNPSEMIR-------AFARIDTDLSSVRRFFWIHKVLRGCLLLISSDIYWEQEQPWDSQTSDVDSSQRLDD  561 (758)
T ss_pred             ccchHHHhccCchhhhh-------hhheeccchhhhhhhhhhhhhhhhhhhhhcccccccccCCCCCCceeccccccccc
Confidence            55555543322211111       11122222333333333222222223333455566777777777776666555444


Q ss_pred             cccccCCcceeeccCCCCccccccCCCCCCCCC-----CCCCCCCCccccccccccceeEeeeccccceeeecccccCCC
Q 004745          534 ANFLHGSLNVRIHRRGDSARETVDANGSSGSPS-----SSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRG  608 (732)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg  608 (732)
                      -..+.+.+...+....+.     -+..|..+++     ++..+|...|.++........|.||.+..+.|+.+.|+...|
T Consensus       562 ~n~~~~~l~~~v~~~~~~-----~~~~~~~~~~~~~~~ssl~nDe~dyq~E~sydy~~rYvGHCNv~TDIKeanFlGqrg  636 (758)
T KOG1310|consen  562 ENGFLTLLEPPVNYENEV-----ESSSGENIVSMYTGHSSLNNDEDDYQDEESYDYASRYVGHCNVTTDIKEANFLGQRG  636 (758)
T ss_pred             cccccccccCcccccccc-----ccccccccccccccccccccchhhcccchhhhHHhhhccccccccccccccccccCC
Confidence            444444444444332221     1122222222     112445555777777888899999999999999999999999


Q ss_pred             CEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCchhHH
Q 004745          609 DYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVL  688 (732)
Q Consensus       609 ~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~~~~~  688 (732)
                      .|+++||.||...||+..+|+.++.+.|.+..|+|++-+|....|||.|.|.+||||.+..-.++....-| +|-+....
T Consensus       637 eyiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~latSgiDstiKIwsp~a~p~~~as~~h-~pns~~iv  715 (758)
T KOG1310|consen  637 EYIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPTLATSGIDSTIKIWSPEATPPSGASRNH-RPNSYAIV  715 (758)
T ss_pred             CeeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCceeeeccCccceEEecccCCCCccccccc-CCchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999885555443323 22233344


Q ss_pred             HHHHHHHHHhhhccccccchhhhhhccccccccCCcCCccccCC
Q 004745          689 EAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS  732 (732)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  732 (732)
                      ...+.|++...|....+...+....+|++ |.++--+++.|+++
T Consensus       716 ~~~e~n~Q~~sR~~~~~l~~~~~~~fr~~-~~~g~~h~~~~t~~  758 (758)
T KOG1310|consen  716 ATNEMNRQQGSRDSYITLRMLSHLAFRAH-LDDGFGHEVLDTDA  758 (758)
T ss_pred             hhhhhhhhhhccCCcchHHHHHHHHHHHh-hcccCCcccccCCC
Confidence            55566666666666666666666677777 77777788999874

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-53  Score=398.34  Aligned_cols=366  Identities=19%  Similarity=0.265  Sum_probs=293.1

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF   91 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw   91 (732)
                      -..+.||.++|.|++|+|+|..||||+.|.++|+||+.+.....+. ++|...|.|++|+|+  |+.|++|+.||.|++|
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPD--gk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPD--GKKIASGSKDGSIRLW  184 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCC--cchhhccccCCeEEEe
Confidence            3457899999999999999999999999999999999999999999 899999999999999  6999999999999999


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC----CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      |.++++.         ....+.+|...|++++|.|-    ..++|++++.||.|+|||+..+.                 
T Consensus       185 dpktg~~---------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-----------------  238 (480)
T KOG0271|consen  185 DPKTGQQ---------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-----------------  238 (480)
T ss_pred             cCCCCCc---------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-----------------
Confidence            9997543         25789999999999999872    34689999999999999998765                 


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                              .+....+|..+|+|+.|-.+  .+|++|+.|++|++|+...+.....+                    .||.
T Consensus       239 --------~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~l--------------------kGHa  288 (480)
T KOG0271|consen  239 --------CVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCREL--------------------KGHA  288 (480)
T ss_pred             --------EEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhh--------------------cccc
Confidence                    23445678889999999876  39999999999999999987655444                    6776


Q ss_pred             cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccccccccc
Q 004745          248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVAT  327 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  327 (732)
                      . +|+.++.+-+-- |=+|..|       ... ..          ++     +.                          
T Consensus       289 h-wvN~lalsTdy~-LRtgaf~-------~t~-~~----------~~-----~~--------------------------  317 (480)
T KOG0271|consen  289 H-WVNHLALSTDYV-LRTGAFD-------HTG-RK----------PK-----SF--------------------------  317 (480)
T ss_pred             h-heeeeeccchhh-hhccccc-------ccc-cc----------CC-----Ch--------------------------
Confidence            6 699999876532 3333322       111 00          00     00                          


Q ss_pred             CcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCC
Q 004745          328 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS  407 (732)
Q Consensus       328 ~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  407 (732)
                      +....                  .+.+.+...+                                               
T Consensus       318 se~~~------------------~Al~rY~~~~-----------------------------------------------  332 (480)
T KOG0271|consen  318 SEEQK------------------KALERYEAVL-----------------------------------------------  332 (480)
T ss_pred             HHHHH------------------HHHHHHHHhh-----------------------------------------------
Confidence            00000                  0000000000                                               


Q ss_pred             ccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccc
Q 004745          408 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSD  487 (732)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~  487 (732)
                                                       ++.          +                                 
T Consensus       333 ---------------------------------~~~----------~---------------------------------  336 (480)
T KOG0271|consen  333 ---------------------------------KDS----------G---------------------------------  336 (480)
T ss_pred             ---------------------------------ccC----------c---------------------------------
Confidence                                             000          1                                 


Q ss_pred             cccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccc--cCCcceeeccCCCCccccccCCCCCCCC
Q 004745          488 IIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL--HGSLNVRIHRRGDSARETVDANGSSGSP  565 (732)
Q Consensus       488 ~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~d~~~l~  565 (732)
                                                       +.+++|+.|.++.+|+-  ..+.+.++.+|...|..+.||||++++|
T Consensus       337 ---------------------------------erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA  383 (480)
T KOG0271|consen  337 ---------------------------------ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA  383 (480)
T ss_pred             ---------------------------------ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE
Confidence                                             33444555555555542  2345678899999999999999999999


Q ss_pred             CCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEe
Q 004745          566 SSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ  645 (732)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~  645 (732)
                      +++=++..++|+-.+ ++.+.+|.||-..|+.|.    +|.|.++|+|||.|.++++||+++.++..-|.||.++|.+|.
T Consensus       384 SaSFDkSVkLW~g~t-Gk~lasfRGHv~~VYqva----wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vD  458 (480)
T KOG0271|consen  384 SASFDKSVKLWDGRT-GKFLASFRGHVAAVYQVA----WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVD  458 (480)
T ss_pred             EeecccceeeeeCCC-cchhhhhhhccceeEEEE----eccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEE
Confidence            997777777798877 899999999999998888    899999999999999999999999999999999999999999


Q ss_pred             ecCCCCeEEEecCCCcEEEEc
Q 004745          646 CHPFDCVVATSGIDNTIKIWT  666 (732)
Q Consensus       646 fsp~~~~l~S~s~D~~i~vW~  666 (732)
                      |+|||..++|||.|..+|+|.
T Consensus       459 wspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  459 WSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ecCCCceeecCCCceEEEeec
Confidence            999999999999999999995

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-52  Score=423.22  Aligned_cols=481  Identities=17%  Similarity=0.157  Sum_probs=370.9

Q ss_pred             hhccccEeeec-cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            7 RRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         7 ~~~~~~~~l~~-h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      .+.++++.++. |++||..++|+|.|.+|++|+.|+.|+|||+..+.+.+.| .+|.+.|.++.|+|+.+-..|++|..|
T Consensus        92 ~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~~~lL~sg~~D  170 (775)
T KOG0319|consen   92 PTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWNRWLLASGATD  170 (775)
T ss_pred             ccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccchhheeecCCC
Confidence            45688888988 9999999999999999999999999999999999999999 899999999999998644568999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      +++++||+....         .++..+..|...|++++|.+++ ..+++++.|..+.+||+.+.+...            
T Consensus       171 ~~v~vwnl~~~~---------tcl~~~~~H~S~vtsL~~~~d~-~~~ls~~RDkvi~vwd~~~~~~l~------------  228 (775)
T KOG0319|consen  171 GTVRVWNLNDKR---------TCLHTMILHKSAVTSLAFSEDS-LELLSVGRDKVIIVWDLVQYKKLK------------  228 (775)
T ss_pred             ceEEEEEcccCc---------hHHHHHHhhhhheeeeeeccCC-ceEEEeccCcEEEEeehhhhhhhh------------
Confidence            999999998532         2478999999999999999964 888899999999999996654220            


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCC--C--CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISST--R--PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~--~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                                   ..+ -...+.++.+-++  +  +.+++|+|.+|.+++||..+.+........               
T Consensus       229 -------------~lp-~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~---------------  279 (775)
T KOG0319|consen  229 -------------TLP-LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQS---------------  279 (775)
T ss_pred             -------------eec-hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccC---------------
Confidence                         000 1113444545443  1  348999999999999999988654432110               


Q ss_pred             ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccc
Q 004745          242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRV  321 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  321 (732)
                        .   ...+..+...+....+++.+.|..+.+||..+.+....+.+..+.+..++|.               -|+..++
T Consensus       280 --~---~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~l---------------G~e~~~l  339 (775)
T KOG0319|consen  280 --D---SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFL---------------GPEESHL  339 (775)
T ss_pred             --C---chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeec---------------CCccceE
Confidence              0   1126666666666678888899999999998866555555444444444432               2455677


Q ss_pred             ccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC-CCc--cchhhhhhHHHHhhccccccchhhhHHh
Q 004745          322 RGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI-GPM--LRHECLCIRAALLLKRKWKNDAQMAIRD  398 (732)
Q Consensus       322 ~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~--~~~~~~~~~~~~~~~~~w~~~~~~~~~~  398 (732)
                      +   .+++...+++     .+..+..         ..++.||...| |-+  ....++++++.|+++++|..+.      
T Consensus       340 a---VATNs~~lr~-----y~~~~~~---------c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~------  396 (775)
T KOG0319|consen  340 A---VATNSPELRL-----YTLPTSY---------CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN------  396 (775)
T ss_pred             E---EEeCCCceEE-----EecCCCc---------eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecC------
Confidence            7   7777777777     3332222         34777777755 222  1113677777777777776420      


Q ss_pred             HHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 004745          399 CYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPR  478 (732)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~  478 (732)
                                                                                                     .
T Consensus       397 -------------------------------------------------------------------------------~  397 (775)
T KOG0319|consen  397 -------------------------------------------------------------------------------N  397 (775)
T ss_pred             -------------------------------------------------------------------------------C
Confidence                                                                                           0


Q ss_pred             CCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCC------cc----eeec
Q 004745          479 TGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS------LN----VRIH  546 (732)
Q Consensus       479 ~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~------~~----~~~~  546 (732)
                      .++...+....+|...  .++++-.+                 ..++++++.|.++|+|.+..+      ..    ....
T Consensus       398 ~~~~~~~a~~~gH~~svgava~~~~~-----------------asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~  460 (775)
T KOG0319|consen  398 CSKSLCVAQANGHTNSVGAVAGSKLG-----------------ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER  460 (775)
T ss_pred             cchhhhhhhhcccccccceeeecccC-----------------ccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence            1111111122222222  23333333                 278999999999999999551      11    2457


Q ss_pred             cCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcC
Q 004745          547 RRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQ  626 (732)
Q Consensus       547 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~  626 (732)
                      .|++.|++|+.+|+.+++|+++.|+..++|+.+. ..+..+|.||+..++++.    |+|..+.|||+|.|+|||||.+.
T Consensus       461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~----Fs~~dq~laT~SgD~TvKIW~is  535 (775)
T KOG0319|consen  461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVS----FSKNDQLLATCSGDKTVKIWSIS  535 (775)
T ss_pred             hhcccccceEecCCCceEEecccccceeeecccC-ceEEEEeeCCccceEEEE----eccccceeEeccCCceEEEEEec
Confidence            8999999999999999999999999999999996 889999999999988888    89999999999999999999999


Q ss_pred             cccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCC
Q 004745          627 TGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPD  683 (732)
Q Consensus       627 tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~  683 (732)
                      ++.|+++|.||+..|..+.|-.+|+.|+|++.||.||||++++.++..++.+|...+
T Consensus       536 ~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Drv  592 (775)
T KOG0319|consen  536 TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRV  592 (775)
T ss_pred             cceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcccee
Confidence            999999999999999999999999999999999999999999999999999997776

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-49  Score=370.46  Aligned_cols=364  Identities=20%  Similarity=0.222  Sum_probs=284.0

Q ss_pred             eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004745           53 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  132 (732)
Q Consensus        53 ~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  132 (732)
                      |...+ .+|.++|.|+.|+|+  |..|++|+.|.++++||+.+.          .|.++.++|...|.+++|+||+ ..|
T Consensus       107 CssS~-~GH~e~Vl~~~fsp~--g~~l~tGsGD~TvR~WD~~Te----------Tp~~t~KgH~~WVlcvawsPDg-k~i  172 (480)
T KOG0271|consen  107 CSSSI-AGHGEAVLSVQFSPT--GSRLVTGSGDTTVRLWDLDTE----------TPLFTCKGHKNWVLCVAWSPDG-KKI  172 (480)
T ss_pred             ecccc-CCCCCcEEEEEecCC--CceEEecCCCceEEeeccCCC----------CcceeecCCccEEEEEEECCCc-chh
Confidence            44445 699999999999998  599999999999999999974          4589999999999999999955 999


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC----CCCEEEEEeCCCe
Q 004745          133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST----RPHLLLVGGSDAF  208 (732)
Q Consensus       133 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~~l~tg~~dg~  208 (732)
                      |+|+.||.|++||..++++...                        ..++|...|++++|.|-    ..++|++++.||.
T Consensus       173 ASG~~dg~I~lwdpktg~~~g~------------------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~  228 (480)
T KOG0271|consen  173 ASGSKDGSIRLWDPKTGQQIGR------------------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS  228 (480)
T ss_pred             hccccCCeEEEecCCCCCcccc------------------------cccCcccceeEEeecccccCCCccceecccCCCC
Confidence            9999999999999999986533                        34567779999999763    2568999999999


Q ss_pred             EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeee
Q 004745          209 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT  288 (732)
Q Consensus       209 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~  288 (732)
                      |+|||+..+..+..+                    .||.. +|+|+.|--+| +|++|+.|++|++|+...+.....+. 
T Consensus       229 vrIWd~~~~~~~~~l--------------------sgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lk-  285 (480)
T KOG0271|consen  229 VRIWDTKLGTCVRTL--------------------SGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELK-  285 (480)
T ss_pred             EEEEEccCceEEEEe--------------------ccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhc-
Confidence            999999877544333                    77877 69999997666 79999999999999999976554444 


Q ss_pred             cCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCC
Q 004745          289 VGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG  368 (732)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  368 (732)
                                     +|...++.++.+.|                       .-+.+|. |                  .
T Consensus       286 ---------------GHahwvN~lalsTd-----------------------y~LRtga-f------------------~  308 (480)
T KOG0271|consen  286 ---------------GHAHWVNHLALSTD-----------------------YVLRTGA-F------------------D  308 (480)
T ss_pred             ---------------ccchheeeeeccch-----------------------hhhhccc-c------------------c
Confidence                           44444444443333                       1111111 0                  0


Q ss_pred             CccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHH
Q 004745          369 PMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE  448 (732)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  448 (732)
                      |.++.                                                                 ..| .+  ..
T Consensus       309 ~t~~~-----------------------------------------------------------------~~~-~s--e~  320 (480)
T KOG0271|consen  309 HTGRK-----------------------------------------------------------------PKS-FS--EE  320 (480)
T ss_pred             ccccc-----------------------------------------------------------------CCC-hH--HH
Confidence            00000                                                                 000 00  00


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCC
Q 004745          449 KVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDE  528 (732)
Q Consensus       449 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~  528 (732)
                      +-....++                                                                        
T Consensus       321 ~~~Al~rY------------------------------------------------------------------------  328 (480)
T KOG0271|consen  321 QKKALERY------------------------------------------------------------------------  328 (480)
T ss_pred             HHHHHHHH------------------------------------------------------------------------
Confidence            00000000                                                                        


Q ss_pred             CcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCC
Q 004745          529 GRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRG  608 (732)
Q Consensus       529 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg  608 (732)
                                               ..+.-..+.+|++++.+.+..+|++....+++.++.||+..+..+.    ||||+
T Consensus       329 -------------------------~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~----fSPd~  379 (480)
T KOG0271|consen  329 -------------------------EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS----FSPDG  379 (480)
T ss_pred             -------------------------HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEE----ECCCc
Confidence                                     1112233478999988888888999887889999999999965554    59999


Q ss_pred             CEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCc----
Q 004745          609 DYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT----  684 (732)
Q Consensus       609 ~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~----  684 (732)
                      +|+||+|-|.+||+||..+|+.+.+|+||-+.|+.|+||.|.++|+|||.|.|+|||++++.+....+.||...|.    
T Consensus       380 r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDw  459 (480)
T KOG0271|consen  380 RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDW  459 (480)
T ss_pred             cEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998884    


Q ss_pred             -hhHHHHHHHHHHHhhhccc
Q 004745          685 -ADVLEAMESNQRKLSRNRE  703 (732)
Q Consensus       685 -~~~~~~~~~~~~~~~~~~~  703 (732)
                       +|...++..-.++..|+|.
T Consensus       460 spDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  460 SPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cCCCceeecCCCceEEEeec
Confidence             6778888888888887774

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.6e-46  Score=353.91  Aligned_cols=215  Identities=25%  Similarity=0.325  Sum_probs=190.0

Q ss_pred             hhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      ++.+.+...--|-+.+|..+.|++|++.||||+.+|.++||+..+...+.+| .+|...|.++.|+|..++..++||+.|
T Consensus       162 ~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~D  240 (459)
T KOG0272|consen  162 LQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASAD  240 (459)
T ss_pred             hhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccC
Confidence            3344444444577899999999999999999999999999999999999999 899999999999998435799999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      |++++|++.+.          .++..+.+|...|..++|+|+ +++|+|++.|.+-++||++++..              
T Consensus       241 gtvklw~~~~e----------~~l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk~E--------------  295 (459)
T KOG0272|consen  241 GTVKLWKLSQE----------TPLQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETKSE--------------  295 (459)
T ss_pred             CceeeeccCCC----------cchhhhhcchhhheeeeecCC-Cceeeecccccchhhcccccchh--------------
Confidence            99999999863          458999999999999999995 59999999999999999999873              


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  245 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (732)
                                 +....+|...|.+++|.|+ |.++++|+.|..-||||+++++.+..+                    .|
T Consensus       296 -----------lL~QEGHs~~v~~iaf~~D-GSL~~tGGlD~~~RvWDlRtgr~im~L--------------------~g  343 (459)
T KOG0272|consen  296 -----------LLLQEGHSKGVFSIAFQPD-GSLAATGGLDSLGRVWDLRTGRCIMFL--------------------AG  343 (459)
T ss_pred             -----------hHhhcccccccceeEecCC-CceeeccCccchhheeecccCcEEEEe--------------------cc
Confidence                       3344678889999999999 889999999999999999999655443                    67


Q ss_pred             CccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      |.. +|.+|+|+|+|..|++|+.|++++|||++.
T Consensus       344 H~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~  376 (459)
T KOG0272|consen  344 HIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRM  376 (459)
T ss_pred             ccc-ceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence            776 699999999999999999999999999987

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-48  Score=394.45  Aligned_cols=569  Identities=16%  Similarity=0.133  Sum_probs=403.5

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      ...|+|+.-+++.-+||.|..||.|+||+..++....++ .+|+.+|+++.|+..  |..|+||+.|+.|.+||+-...+
T Consensus        65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tf-ngHK~AVt~l~fd~~--G~rlaSGskDt~IIvwDlV~E~G  141 (888)
T KOG0306|consen   65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITF-NGHKAAVTTLKFDKI--GTRLASGSKDTDIIVWDLVGEEG  141 (888)
T ss_pred             cceEEEeeccCCcceEEEEecCceEEeeccCCCceeeee-cccccceEEEEEccc--CceEeecCCCccEEEEEecccee
Confidence            358999999999999999999999999999999888888 899999999999998  69999999999999999985433


Q ss_pred             CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004745           99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  178 (732)
Q Consensus        99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (732)
                                +..+.||++.|+..-|.. +.+++++.+.|+.|++||+.+..                         .+.
T Consensus       142 ----------l~rL~GHkd~iT~~~F~~-~~~~lvS~sKDs~iK~WdL~tqh-------------------------Cf~  185 (888)
T KOG0306|consen  142 ----------LFRLRGHKDSITQALFLN-GDSFLVSVSKDSMIKFWDLETQH-------------------------CFE  185 (888)
T ss_pred             ----------eEEeecchHHHhHHhccC-CCeEEEEeccCceEEEEecccce-------------------------eee
Confidence                      688999999999999987 55899999999999999998876                         233


Q ss_pred             CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004745          179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  258 (732)
Q Consensus       179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  258 (732)
                      ++..|...++++++.+   +.+++++.|+.+++|++.....-..      .++.+......... ....+ ....++..+
T Consensus       186 Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~------~~~~~s~~~~G~~~-rqsk~-R~i~l~~d~  254 (888)
T KOG0306|consen  186 THVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKE------TNRYISTKLRGTFI-RQSKG-REINLVTDF  254 (888)
T ss_pred             EEecccceEEEEEEec---ceEEEEecCCceEEEEeeccccccc------ccccceeeccceee-eccCC-ceeEEeecC
Confidence            4456778999999986   4899999999999999932211000      00001110011111 11112 245677788


Q ss_pred             CCCEEEEEecCCeEEEEECCCCCCcceeeec-----------CCCCceee--ecc-----CCCCccCCCCCCccCCCccc
Q 004745          259 NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-----------GDASKIMS--FTP-----TLNGLELQPPIHDFLQTNIR  320 (732)
Q Consensus       259 ~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----------~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~g~~  320 (732)
                      ++++|++-+.|..+.+|.+.+..........           .+....+.  ..-     ..-...+.+.++.+.|.+..
T Consensus       255 s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~  334 (888)
T KOG0306|consen  255 SDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGT  334 (888)
T ss_pred             cccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCc
Confidence            9999999999999999999885432221111           00000000  000     00011223334444444333


Q ss_pred             cccccccCcchhhHHHHHHHhhhhc-CCCchhhhhHhHHHHhcccCCC-----CCccchhhhhhHHHHhhccccccchhh
Q 004745          321 VRGEVATGLGKCRMLVEIARNSLEE-GKHPYYGIEACNEVLEGHLSGI-----GPMLRHECLCIRAALLLKRKWKNDAQM  394 (732)
Q Consensus       321 ~~~~~~~~~d~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~~~w~~~~~~  394 (732)
                      .. .+..-.++++.+     ..++. +..-.......+-.+.||..+|     |.+..  +++++ ....+.+|+.+...
T Consensus       335 ~~-~lv~l~nNtv~~-----ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~--~~~Sg-a~~SikiWn~~t~k  405 (888)
T KOG0306|consen  335 EN-TLVLLANNTVEW-----YSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI--LLASG-AGESIKIWNRDTLK  405 (888)
T ss_pred             ce-eEEEeecCceEE-----EEeccCCCCCccccccceeeeccchhheeEEEeecCce--eeeec-CCCcEEEEEccCcc
Confidence            21 111122233332     22332 1111122223344566666655     33332  23332 34567888866222


Q ss_pred             hHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 004745          395 AIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGAR  474 (732)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  474 (732)
                      .++..      ...+                        +....|.|.           .+++..+...+.+.+++.   
T Consensus       406 ciRTi------~~~y------------------------~l~~~Fvpg-----------d~~Iv~G~k~Gel~vfdl---  441 (888)
T KOG0306|consen  406 CIRTI------TCGY------------------------ILASKFVPG-----------DRYIVLGTKNGELQVFDL---  441 (888)
T ss_pred             eeEEe------cccc------------------------EEEEEecCC-----------CceEEEeccCCceEEEEe---
Confidence            22111      0000                        233455564           344555554444444441   


Q ss_pred             CCCCCCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccc------cCCcce---
Q 004745          475 SEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL------HGSLNV---  543 (732)
Q Consensus       475 ~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~------~~~~~~---  543 (732)
                         .++.+  +.+..+|.+.  +++.+||+                  +.+++|+-|.+++.|++      .|....   
T Consensus       442 ---aS~~l--~Eti~AHdgaIWsi~~~pD~------------------~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls  498 (888)
T KOG0306|consen  442 ---ASASL--VETIRAHDGAIWSISLSPDN------------------KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS  498 (888)
T ss_pred             ---ehhhh--hhhhhccccceeeeeecCCC------------------CceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence               11111  2345566666  89999999                  99999999999999997      233322   


Q ss_pred             ----eeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCc
Q 004745          544 ----RIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGR  619 (732)
Q Consensus       544 ----~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~  619 (732)
                          +...-.+.|.|+.+||||++||.+--+++..||..++ ++..-.++||.-+|.|+.    +|||++.++|||.|.+
T Consensus       499 l~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smD----IS~DSklivTgSADKn  573 (888)
T KOG0306|consen  499 LKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMD----ISPDSKLIVTGSADKN  573 (888)
T ss_pred             eccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-eeeeeeecccccceeEEe----ccCCcCeEEeccCCCc
Confidence                3445567899999999999999999999999999888 899999999999999888    8999999999999999


Q ss_pred             EEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCC-----chhHHHHHHHH
Q 004745          620 WFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPD-----TADVLEAMESN  694 (732)
Q Consensus       620 i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~-----~~~~~~~~~~~  694 (732)
                      |+||-+.-|.|.+.|.+|.+.|++|.|.|....+.|+|.|+.||-||-...+.++.+.||...+     .++...+++.+
T Consensus       574 VKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s  653 (888)
T KOG0306|consen  574 VKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS  653 (888)
T ss_pred             eEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence            9999999999999999999999999999999999999999999999999999999999996655     56778889999


Q ss_pred             HHHhhhccccccchhhhhhccccc
Q 004745          695 QRKLSRNREHSLSYELLERFHMHE  718 (732)
Q Consensus       695 ~~~~~~~~~~~~~~~~~~~~~~~~  718 (732)
                      +|+..|.|..+.+..+++..+..|
T Consensus       654 hD~sIRlwE~tde~~~lEeekE~E  677 (888)
T KOG0306|consen  654 HDKSIRLWERTDEILILEEEKEGE  677 (888)
T ss_pred             CCceeEeeeccCcceeeehhhhhh
Confidence            999999999999888777766653

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.2e-44  Score=347.71  Aligned_cols=510  Identities=13%  Similarity=0.124  Sum_probs=359.6

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-   85 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~-~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-   85 (732)
                      .+.....+.+|..+++...|+|.|.|+|+|...|+|||||.... ..++.-.+.-.++|..++|++++  ++|+..++- 
T Consensus        48 ~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds--~RI~avGEGr  125 (603)
T KOG0318|consen   48 NPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDS--KRIAAVGEGR  125 (603)
T ss_pred             CccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCC--cEEEEEecCc
Confidence            33455678899999999999999999999999999999998763 33333226778999999999995  777776642 


Q ss_pred             ---CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004745           86 ---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  162 (732)
Q Consensus        86 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  162 (732)
                         |.+.+||..+.            +-.+.+|...|+++.|-|.-+-.++||++|+.|.+|+=...+            
T Consensus       126 erfg~~F~~DSG~S------------vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK------------  181 (603)
T KOG0318|consen  126 ERFGHVFLWDSGNS------------VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK------------  181 (603)
T ss_pred             cceeEEEEecCCCc------------cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCee------------
Confidence               45777877643            677899999999999999888899999999999999743222            


Q ss_pred             ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004745          163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  242 (732)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (732)
                                   .-.....|..-|.++.|+|| |.++++.+.||+|.+||=.+++.+..+..                 
T Consensus       182 -------------Fk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~-----------------  230 (603)
T KOG0318|consen  182 -------------FKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELED-----------------  230 (603)
T ss_pred             -------------eeecccccccceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecC-----------------
Confidence                         12233456678999999999 89999999999999999999887665532                 


Q ss_pred             cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecC--------------CCCc-----eee-e----
Q 004745          243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG--------------DASK-----IMS-F----  298 (732)
Q Consensus       243 ~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--------------~~~~-----~~~-~----  298 (732)
                      ..+|.+ .|.+++|+||++.+++++.|.+++|||+.+.+.........              ..+.     .+. +    
T Consensus       231 ~~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d  309 (603)
T KOG0318|consen  231 SDAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSD  309 (603)
T ss_pred             CCCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccC
Confidence            146766 59999999999999999999999999999865333221111              1000     111 1    


Q ss_pred             ---ccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccc--h
Q 004745          299 ---TPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR--H  373 (732)
Q Consensus       299 ---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~  373 (732)
                         .....+|.-.+.++..++|++++.   +++.|+.+.-     |+...|....       ..-.+|...+..-..  .
T Consensus       310 ~~~~~~i~GHnK~ITaLtv~~d~~~i~---SgsyDG~I~~-----W~~~~g~~~~-------~~g~~h~nqI~~~~~~~~  374 (603)
T KOG0318|consen  310 PSVLKVISGHNKSITALTVSPDGKTIY---SGSYDGHINS-----WDSGSGTSDR-------LAGKGHTNQIKGMAASES  374 (603)
T ss_pred             CChhheecccccceeEEEEcCCCCEEE---eeccCceEEE-----EecCCccccc-------cccccccceEEEEeecCC
Confidence               124568888999999999999999   9999999998     9998777321       111334333210000  0


Q ss_pred             hhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHH
Q 004745          374 ECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI  453 (732)
Q Consensus       374 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  453 (732)
                      .-+.+.+.|.+++.-+.....    .....                              +..+...|.           
T Consensus       375 ~~~~t~g~Dd~l~~~~~~~~~----~t~~~------------------------------~~~lg~QP~-----------  409 (603)
T KOG0318|consen  375 GELFTIGWDDTLRVISLKDNG----YTKSE------------------------------VVKLGSQPK-----------  409 (603)
T ss_pred             CcEEEEecCCeEEEEecccCc----ccccc------------------------------eeecCCCce-----------
Confidence            123333444444333211000    00000                              001111221           


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCccccc------ccccccccc-CCCCCCCCCCCCCCCCChhhhhhhcccCCCCC
Q 004745          454 KKHIAAAETEKNNKANDGGARSEPRTGRVLSL------SDIIYRSEA-NSDASQDGPRSEREDSDYDEEVEVDFHTSVPG  526 (732)
Q Consensus       454 ~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~-~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~  526 (732)
                        -++....+.+..+-.        ...+..+      .+.....+. .++.+|++                  ...+.|
T Consensus       410 --~lav~~d~~~avv~~--------~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~------------------~~vaVG  461 (603)
T KOG0318|consen  410 --GLAVLSDGGTAVVAC--------ISDIVLLQDQTKVSSIPIGYESSAVAVSPDG------------------SEVAVG  461 (603)
T ss_pred             --eEEEcCCCCEEEEEe--------cCcEEEEecCCcceeeccccccceEEEcCCC------------------CEEEEe
Confidence              111111111111100        0000101      111111122 68889999                  899999


Q ss_pred             CCCcccccccccCCc---ceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeeccc
Q 004745          527 DEGRDVEANFLHGSL---NVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASF  603 (732)
Q Consensus       527 ~~d~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f  603 (732)
                      .+|+.++++.++|..   ...+..|...|++++||||+++||.+...+...+|+..........+.-|+.++.++.    
T Consensus       462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~a----  537 (603)
T KOG0318|consen  462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVA----  537 (603)
T ss_pred             cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEE----
Confidence            999999999998732   3467889999999999999999999966666666999886554555566999977777    


Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcc-cEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCC
Q 004745          604 LGQRGDYIASGSDDGRWFIWEKQTG-RLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPS  668 (732)
Q Consensus       604 ~s~dg~~lasgs~Dg~i~iWd~~tg-~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~  668 (732)
                      |||++++|||||-|..|.||+++.. +-+....+|...|+.|.|- |...|+|+|.|..||+|++.
T Consensus       538 WsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  538 WSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             eCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence            7999999999999999999999853 4567777899999999997 45679999999999999874

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.1e-44  Score=362.42  Aligned_cols=472  Identities=15%  Similarity=0.180  Sum_probs=358.3

Q ss_pred             ccccEeeeccCCceeEEEEcCCCC--EEEEEeCCCcEEEEeCCCCee-EEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            9 LSQERELEGHQGCVNAISWNSKGS--LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~--~lasg~~dg~i~vWd~~~~~~-~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      ....+.|+||.+.|.++.|+|+-.  .|++|..|+++++||+.+... +..+ ..|...|++++|+++  +..+++++.|
T Consensus       137 ~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~-~~H~S~vtsL~~~~d--~~~~ls~~RD  213 (775)
T KOG0319|consen  137 GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTM-ILHKSAVTSLAFSED--SLELLSVGRD  213 (775)
T ss_pred             CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHH-HhhhhheeeeeeccC--CceEEEeccC
Confidence            346788999999999999999654  689999999999999996654 6666 799999999999999  4899999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC--C--CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG--N--PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      ..+.|||+...+.          ...+. -...+.++.+-++  +  +.++.|+|.+|.+++||..+++.......    
T Consensus       214 kvi~vwd~~~~~~----------l~~lp-~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~----  278 (775)
T KOG0319|consen  214 KVIIVWDLVQYKK----------LKTLP-LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQ----  278 (775)
T ss_pred             cEEEEeehhhhhh----------hheec-hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhcc----
Confidence            9999999964321          23332 2345666666653  1  35899999999999999988874311110    


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                                        +...  .+..+...+. ...++..+.|..+.++|.++.+..+.+                  
T Consensus       279 ------------------~~~~--e~~~~~~~~~-~~~~l~vtaeQnl~l~d~~~l~i~k~i------------------  319 (775)
T KOG0319|consen  279 ------------------SDSE--EIDHLLAIES-MSQLLLVTAEQNLFLYDEDELTIVKQI------------------  319 (775)
T ss_pred             ------------------CCch--hhhcceeccc-cCceEEEEccceEEEEEccccEEehhh------------------
Confidence                              0011  2444444444 345666677899999999988765544                  


Q ss_pred             ccCCCccccEEEEEEc-CCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccc
Q 004745          242 SEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIR  320 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~s-p~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  320 (732)
                        .|.++ .|..+.|- |+.++|++++..+.+++|++.+....                 .+.+|...+.++....+|..
T Consensus       320 --vG~nd-EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-----------------ii~GH~e~vlSL~~~~~g~l  379 (775)
T KOG0319|consen  320 --VGYND-EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-----------------IIPGHTEAVLSLDVWSSGDL  379 (775)
T ss_pred             --cCCch-hheeeeecCCccceEEEEeCCCceEEEecCCCceE-----------------EEeCchhheeeeeecccCcE
Confidence              44444 48888875 67789999999999999988874322                 45677777777777778888


Q ss_pred             cccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCC----ccchhhhhhHHHHhhccccccchhhhH
Q 004745          321 VRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP----MLRHECLCIRAALLLKRKWKNDAQMAI  396 (732)
Q Consensus       321 ~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~~w~~~~~~~~  396 (732)
                      ++   +++.|+++++     |.++++..    ...+.....+|...|..    -+.+..|++++.|.++++|...     
T Consensus       380 la---t~sKD~svil-----Wr~~~~~~----~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~-----  442 (775)
T KOG0319|consen  380 LA---TGSKDKSVIL-----WRLNNNCS----KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP-----  442 (775)
T ss_pred             EE---EecCCceEEE-----EEecCCcc----hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC-----
Confidence            99   9999999999     98854432    22345566677766522    1222345666666666666533     


Q ss_pred             HhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 004745          397 RDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSE  476 (732)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~  476 (732)
                                                                                                  +..+
T Consensus       443 ----------------------------------------------------------------------------~s~~  446 (775)
T KOG0319|consen  443 ----------------------------------------------------------------------------KSKE  446 (775)
T ss_pred             ----------------------------------------------------------------------------Cccc
Confidence                                                                                        1000


Q ss_pred             CCCCccc-ccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCccccccccc-CCcceeeccCCCCc
Q 004745          477 PRTGRVL-SLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLH-GSLNVRIHRRGDSA  552 (732)
Q Consensus       477 ~~~g~~~-~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~-~~~~~~~~~~~~~v  552 (732)
                      ...--++ .-.+...|...  +++.+|+.                  +++++|++|++.|+|+++ ..+..++.+|...|
T Consensus       447 ~~~~~~~~~~~t~~aHdKdIN~Vaia~nd------------------kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGv  508 (775)
T KOG0319|consen  447 TAFPIVLTCRYTERAHDKDINCVAIAPND------------------KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGV  508 (775)
T ss_pred             ccccceehhhHHHHhhcccccceEecCCC------------------ceEEecccccceeeecccCceEEEEeeCCccce
Confidence            0000000 00112233333  67777777                  999999999999999996 56778999999999


Q ss_pred             cccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEE
Q 004745          553 RETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIK  632 (732)
Q Consensus       553 ~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~  632 (732)
                      ++|.|+|.++.+|++++|.+.+||...+ +.++++|.||+..   |-.+.| -.+|+.|+|++.||.||||++.+++|++
T Consensus       509 w~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eGH~~a---Vlra~F-~~~~~qliS~~adGliKlWnikt~eC~~  583 (775)
T KOG0319|consen  509 WCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEGHTSA---VLRASF-IRNGKQLISAGADGLIKLWNIKTNECEM  583 (775)
T ss_pred             EEEEeccccceeEeccCCceEEEEEecc-ceeeeeecCccce---eEeeee-eeCCcEEEeccCCCcEEEEeccchhhhh
Confidence            9999999999999999999999999998 9999999999998   556666 6689999999999999999999999999


Q ss_pred             EEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCc
Q 004745          633 MLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPS  673 (732)
Q Consensus       633 ~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~  673 (732)
                      +|.+|++.|++++-+|.+..++|||.||.|.+|.-.+.+..
T Consensus       584 tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~~  624 (775)
T KOG0319|consen  584 TLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEEEQ  624 (775)
T ss_pred             hhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHHHH
Confidence            99999999999999999999999999999999987776654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5e-42  Score=346.44  Aligned_cols=452  Identities=16%  Similarity=0.211  Sum_probs=349.1

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      ...-++.||+..|+++.|...|..||+||.|+.|.|||+-...-+.++ .+|...|+..-|...  .+.+++++.|+.|+
T Consensus        98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~~--~~~lvS~sKDs~iK  174 (888)
T KOG0306|consen   98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLNG--DSFLVSVSKDSMIK  174 (888)
T ss_pred             ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccCC--CeEEEEeccCceEE
Confidence            556778999999999999999999999999999999999988888888 899999999999985  38999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCC------------------
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS------------------  151 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~------------------  151 (732)
                      +||+.+.          .|..+...|...+.++++.+   +.+++++.|+.+++|++....-                  
T Consensus       175 ~WdL~tq----------hCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~r  241 (888)
T KOG0306|consen  175 FWDLETQ----------HCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIR  241 (888)
T ss_pred             EEecccc----------eeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeee
Confidence            9999973          45788889999999999986   6888999999999999921100                  


Q ss_pred             ------CC-----------------------------------C-------CCC--------------------------
Q 004745          152 ------CP-----------------------------------P-------AGS--------------------------  157 (732)
Q Consensus       152 ------~~-----------------------------------~-------~~~--------------------------  157 (732)
                            ..                                   +       ...                          
T Consensus       242 qsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~  321 (888)
T KOG0306|consen  242 QSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSA  321 (888)
T ss_pred             ccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechh
Confidence                  00                                   0       000                          


Q ss_pred             --------CCcccceEEeeccCCcc-----------------ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004745          158 --------SHQECRNILLDLRCGAK-----------------RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  212 (732)
Q Consensus       158 --------~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw  212 (732)
                              ........++-+.++..                 ..-....+|...|.+++++.+ ...+++ +..+.+++|
T Consensus       322 kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d-~~~~~S-ga~~SikiW  399 (888)
T KOG0306|consen  322 KIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD-SILLAS-GAGESIKIW  399 (888)
T ss_pred             heeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC-ceeeee-cCCCcEEEE
Confidence                    00000000110111100                 000223578889999999987 444444 456789999


Q ss_pred             ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCC
Q 004745          213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA  292 (732)
Q Consensus       213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  292 (732)
                      +..+.+.+.++.                      .+ .+.+..|.|.++++++|...|.+.+||+.+.....        
T Consensus       400 n~~t~kciRTi~----------------------~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E--------  448 (888)
T KOG0306|consen  400 NRDTLKCIRTIT----------------------CG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVE--------  448 (888)
T ss_pred             EccCcceeEEec----------------------cc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhh--------
Confidence            999886555441                      11 48889999999999999999999999999854322        


Q ss_pred             CceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccc
Q 004745          293 SKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR  372 (732)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  372 (732)
                              ..+.|+..+-.++.+||++..+   +++.|+++++     |+++--..                        
T Consensus       449 --------ti~AHdgaIWsi~~~pD~~g~v---T~saDktVkf-----Wdf~l~~~------------------------  488 (888)
T KOG0306|consen  449 --------TIRAHDGAIWSISLSPDNKGFV---TGSADKTVKF-----WDFKLVVS------------------------  488 (888)
T ss_pred             --------hhhccccceeeeeecCCCCceE---EecCCcEEEE-----EeEEEEec------------------------
Confidence                    3446677777778888888777   7777777777     66551100                        


Q ss_pred             hhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHH
Q 004745          373 HECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN  452 (732)
Q Consensus       373 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  452 (732)
                                                                                         .|..         
T Consensus       489 -------------------------------------------------------------------~~gt---------  492 (888)
T KOG0306|consen  489 -------------------------------------------------------------------VPGT---------  492 (888)
T ss_pred             -------------------------------------------------------------------cCcc---------
Confidence                                                                               0000         


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccccccccc-CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcc
Q 004745          453 IKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEA-NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRD  531 (732)
Q Consensus       453 ~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~  531 (732)
                       .+.+.+-...+                      ++....+. ++.+||||                  ++++.+--|.+
T Consensus       493 -~~k~lsl~~~r----------------------tLel~ddvL~v~~Spdg------------------k~LaVsLLdnT  531 (888)
T KOG0306|consen  493 -QKKVLSLKHTR----------------------TLELEDDVLCVSVSPDG------------------KLLAVSLLDNT  531 (888)
T ss_pred             -cceeeeeccce----------------------EEeccccEEEEEEcCCC------------------cEEEEEeccCe
Confidence             00000000001                      11111122 57789999                  99999999999


Q ss_pred             cccccccC-CcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCE
Q 004745          532 VEANFLHG-SLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDY  610 (732)
Q Consensus       532 ~~~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~  610 (732)
                      ++++-++. ++..++++|.-+|.|+..|||++++++++.|...++|..+. +++.+.|-+|.+.+.++.    |-|+.++
T Consensus       532 VkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~----F~P~~~~  606 (888)
T KOG0306|consen  532 VKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQ----FLPKTHL  606 (888)
T ss_pred             EEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecccc-chhhhhhhcccCceeEEE----Eccccee
Confidence            99999975 78889999999999999999999999999999999999998 899999999999966665    5899999


Q ss_pred             EEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCC
Q 004745          611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVP  672 (732)
Q Consensus       611 lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~  672 (732)
                      ++|++.|+.|+-||.+..++++.|.||...|+|++.+|+|.+++|+|.|.+||+|.-.....
T Consensus       607 FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  607 FFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             EEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence            99999999999999999999999999999999999999999999999999999999766443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.5e-41  Score=301.61  Aligned_cols=218  Identities=23%  Similarity=0.357  Sum_probs=189.8

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      .++..++|+||...|+++.|++|.++|++++.||.+.|||..+...++.+ .-....|..++|+|.  |++++.|+-|+.
T Consensus        44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sPS--g~~VAcGGLdN~  120 (343)
T KOG0286|consen   44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSPS--GNFVACGGLDNK  120 (343)
T ss_pred             eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECCC--CCeEEecCcCce
Confidence            35567899999999999999999999999999999999999998888888 567889999999999  599999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      ..||++.+.+....    ....+.+.+|.+.+.++.|.+ + ..|+|++.|.++.+||+++++.                
T Consensus       121 Csiy~ls~~d~~g~----~~v~r~l~gHtgylScC~f~d-D-~~ilT~SGD~TCalWDie~g~~----------------  178 (343)
T KOG0286|consen  121 CSIYPLSTRDAEGN----VRVSRELAGHTGYLSCCRFLD-D-NHILTGSGDMTCALWDIETGQQ----------------  178 (343)
T ss_pred             eEEEeccccccccc----ceeeeeecCccceeEEEEEcC-C-CceEecCCCceEEEEEcccceE----------------
Confidence            99999986532211    133567899999999999987 4 5677999999999999999873                


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                               .....+|.+.|.+++++|.+++.+++|+.|+..++||++.+             .|.++|       .||.
T Consensus       179 ---------~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-------------~c~qtF-------~ghe  229 (343)
T KOG0286|consen  179 ---------TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-------------QCVQTF-------EGHE  229 (343)
T ss_pred             ---------EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-------------ceeEee-------cccc
Confidence                     33445889999999999955999999999999999999987             455555       7887


Q ss_pred             cccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      . .|+++.|.|+|.-+++|+.|++.++||++..
T Consensus       230 s-DINsv~ffP~G~afatGSDD~tcRlyDlRaD  261 (343)
T KOG0286|consen  230 S-DINSVRFFPSGDAFATGSDDATCRLYDLRAD  261 (343)
T ss_pred             c-ccceEEEccCCCeeeecCCCceeEEEeecCC
Confidence            7 4999999999999999999999999999983

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.1e-40  Score=291.38  Aligned_cols=188  Identities=19%  Similarity=0.334  Sum_probs=156.2

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCcee
Q 004745           32 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL  111 (732)
Q Consensus        32 ~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  111 (732)
                      -+|||+|+|.+||+|...+|.|..++ +..++.|+.++..|+.  ..|++++ .-.||+||+++.+.        .|+.+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTpdk--~~LAaa~-~qhvRlyD~~S~np--------~Pv~t   78 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITPDK--KDLAAAG-NQHVRLYDLNSNNP--------NPVAT   78 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcCCc--chhhhcc-CCeeEEEEccCCCC--------CceeE
Confidence            48999999999999999999999999 5667889999999993  6777765 57899999997653        46899


Q ss_pred             eccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEE
Q 004745          112 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD  191 (732)
Q Consensus       112 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  191 (732)
                      +.+|...|+++.|..++ +.+++|++||+++|||++.....                          ....+..+|+++.
T Consensus        79 ~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~q--------------------------R~~~~~spVn~vv  131 (311)
T KOG0315|consen   79 FEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQ--------------------------RNYQHNSPVNTVV  131 (311)
T ss_pred             EeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcccc--------------------------hhccCCCCcceEE
Confidence            99999999999999954 99999999999999999985421                          1123456899999


Q ss_pred             ecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCe
Q 004745          192 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH  271 (732)
Q Consensus       192 ~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~  271 (732)
                      .+|+ ...|++|..+|.|++||+....             |.....|..       ..+|.++...|+|++|+++...|.
T Consensus       132 lhpn-QteLis~dqsg~irvWDl~~~~-------------c~~~liPe~-------~~~i~sl~v~~dgsml~a~nnkG~  190 (311)
T KOG0315|consen  132 LHPN-QTELISGDQSGNIRVWDLGENS-------------CTHELIPED-------DTSIQSLTVMPDGSMLAAANNKGN  190 (311)
T ss_pred             ecCC-cceEEeecCCCcEEEEEccCCc-------------cccccCCCC-------CcceeeEEEcCCCcEEEEecCCcc
Confidence            9999 4589999999999999998753             222222221       225999999999999999999999


Q ss_pred             EEEEECCC
Q 004745          272 VYLMDVNH  279 (732)
Q Consensus       272 v~iwd~~~  279 (732)
                      .++|++-+
T Consensus       191 cyvW~l~~  198 (311)
T KOG0315|consen  191 CYVWRLLN  198 (311)
T ss_pred             EEEEEccC
Confidence            99999876

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.2e-41  Score=318.67  Aligned_cols=280  Identities=18%  Similarity=0.237  Sum_probs=247.9

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC-CCcEEEEEeC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASE  137 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s~s~  137 (732)
                      .+.+.+|..+.|+++  ++.|+||+.+|.++||+....          ..+.++.+|...|.++.|+|. ++..+|||+.
T Consensus       172 ~gd~rPis~~~fS~d--s~~laT~swsG~~kvW~~~~~----------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~  239 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRD--SKHLATGSWSGLVKVWSVPQC----------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASA  239 (459)
T ss_pred             ccCCCcceeeEeecC--CCeEEEeecCCceeEeecCCc----------ceeEEEeccccceeeEEEccCCCccceeeecc
Confidence            367889999999999  499999999999999999864          237899999999999999997 4678999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004745          138 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  217 (732)
Q Consensus       138 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~  217 (732)
                      ||++++|++.+..                         .+....+|...|..++|+|+ |++|+|++.|.+-|+||+++.
T Consensus       240 Dgtvklw~~~~e~-------------------------~l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk  293 (459)
T KOG0272|consen  240 DGTVKLWKLSQET-------------------------PLQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETK  293 (459)
T ss_pred             CCceeeeccCCCc-------------------------chhhhhcchhhheeeeecCC-Cceeeecccccchhhcccccc
Confidence            9999999998865                         35556678889999999999 899999999999999999998


Q ss_pred             CCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceee
Q 004745          218 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS  297 (732)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  297 (732)
                      ..+-..                    .||.. .|.+++|+|||..+++|+.|..-+|||++++.                
T Consensus       294 ~ElL~Q--------------------EGHs~-~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr----------------  336 (459)
T KOG0272|consen  294 SELLLQ--------------------EGHSK-GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR----------------  336 (459)
T ss_pred             hhhHhh--------------------ccccc-ccceeEecCCCceeeccCccchhheeecccCc----------------
Confidence            654332                    77877 59999999999999999999999999999832                


Q ss_pred             eccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhh
Q 004745          298 FTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLC  377 (732)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  377 (732)
                                                                                                      
T Consensus       337 --------------------------------------------------------------------------------  336 (459)
T KOG0272|consen  337 --------------------------------------------------------------------------------  336 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHH
Q 004745          378 IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI  457 (732)
Q Consensus       378 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l  457 (732)
                                                                                                      
T Consensus       337 --------------------------------------------------------------------------------  336 (459)
T KOG0272|consen  337 --------------------------------------------------------------------------------  336 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccc
Q 004745          458 AAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL  537 (732)
Q Consensus       458 ~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~  537 (732)
                                                                                                      
T Consensus       337 --------------------------------------------------------------------------------  336 (459)
T KOG0272|consen  337 --------------------------------------------------------------------------------  336 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCC
Q 004745          538 HGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDD  617 (732)
Q Consensus       538 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~D  617 (732)
                                                                    ++..|.||...|..|.    |||+|..|||||.|
T Consensus       337 ----------------------------------------------~im~L~gH~k~I~~V~----fsPNGy~lATgs~D  366 (459)
T KOG0272|consen  337 ----------------------------------------------CIMFLAGHIKEILSVA----FSPNGYHLATGSSD  366 (459)
T ss_pred             ----------------------------------------------EEEEecccccceeeEe----ECCCceEEeecCCC
Confidence                                                          2334567877765555    69999999999999


Q ss_pred             CcEEEEEcCcccEEEEEecCcccEEEEeecC-CCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCC-----chhHHHHH
Q 004745          618 GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHP-FDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPD-----TADVLEAM  691 (732)
Q Consensus       618 g~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp-~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~-----~~~~~~~~  691 (732)
                      ++++|||++-.+++.++.+|+..|+.|.|+| .|.+|+|+|.|++++||...+..++.++.||.+.|     .++...++
T Consensus       367 nt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~  446 (459)
T KOG0272|consen  367 NTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIA  446 (459)
T ss_pred             CcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEE
Confidence            9999999999999999999999999999999 67799999999999999999999999999999887     46778888


Q ss_pred             HHHHHHhhhccc
Q 004745          692 ESNQRKLSRNRE  703 (732)
Q Consensus       692 ~~~~~~~~~~~~  703 (732)
                      +.+.|++.++|.
T Consensus       447 t~s~DRT~KLW~  458 (459)
T KOG0272|consen  447 TSSFDRTIKLWR  458 (459)
T ss_pred             EeccCceeeecc
Confidence            999999988884

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2e-39  Score=315.31  Aligned_cols=553  Identities=13%  Similarity=0.159  Sum_probs=359.5

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCC
Q 004745           25 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  104 (732)
Q Consensus        25 l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~  104 (732)
                      |.-.|.|+.++-.. .+.|.+-++++......+ ..|...++-..|+|.  |.++++|...|+|||||......      
T Consensus        24 ig~dpkgd~ilY~n-Gksv~ir~i~~~~~~~iY-tEH~~~vtVAkySPs--G~yiASGD~sG~vRIWdtt~~~h------   93 (603)
T KOG0318|consen   24 IGGDPKGDNILYTN-GKSVIIRNIDNPASVDIY-TEHAHQVTVAKYSPS--GFYIASGDVSGKVRIWDTTQKEH------   93 (603)
T ss_pred             eccCCCCCeEEEeC-CCEEEEEECCCccceeee-ccccceeEEEEeCCC--ceEEeecCCcCcEEEEeccCcce------
Confidence            45567776555443 357889999988887777 799999999999999  68999999999999999875321      


Q ss_pred             CCCCceeeccccCceeEEEEecCCCcEEEEEe-CC--CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004745          105 AITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-ED--GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  181 (732)
Q Consensus       105 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (732)
                        .....++...++|..|+|++++.+++|+|- ++  |.+.+||.-+.                           +-+..
T Consensus        94 --iLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S---------------------------vGei~  144 (603)
T KOG0318|consen   94 --ILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS---------------------------VGEIT  144 (603)
T ss_pred             --eeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCc---------------------------cceee
Confidence              123456667889999999997755554442 22  34566764332                           33455


Q ss_pred             CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC
Q 004745          182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  261 (732)
Q Consensus       182 ~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~  261 (732)
                      +|...|.+++|-|..+-++++|+.|++|.+|+=.-.+-..++                    ..|+. -|+++.|+|||.
T Consensus       145 GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~--------------------r~Hsk-FV~~VRysPDG~  203 (603)
T KOG0318|consen  145 GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF--------------------REHSK-FVNCVRYSPDGS  203 (603)
T ss_pred             ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc--------------------ccccc-ceeeEEECCCCC
Confidence            778899999999998999999999999999975433221111                    34555 599999999999


Q ss_pred             EEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHh
Q 004745          262 EVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARN  341 (732)
Q Consensus       262 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~  341 (732)
                      ++++++.||+|.+||-.+++....+.             ....|...+.++.++||+.+++   +++.|.++++     |
T Consensus       204 ~Fat~gsDgki~iyDGktge~vg~l~-------------~~~aHkGsIfalsWsPDs~~~~---T~SaDkt~KI-----W  262 (603)
T KOG0318|consen  204 RFATAGSDGKIYIYDGKTGEKVGELE-------------DSDAHKGSIFALSWSPDSTQFL---TVSADKTIKI-----W  262 (603)
T ss_pred             eEEEecCCccEEEEcCCCccEEEEec-------------CCCCccccEEEEEECCCCceEE---EecCCceEEE-----E
Confidence            99999999999999999976433222             3567888899999999999999   9999999999     9


Q ss_pred             hhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHH
Q 004745          342 SLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALE  421 (732)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (732)
                      +....+.. ..+..... +...  .+.---+.+.+++.+..+++...+.+.      +.                     
T Consensus       263 dVs~~slv-~t~~~~~~-v~dq--qvG~lWqkd~lItVSl~G~in~ln~~d------~~---------------------  311 (603)
T KOG0318|consen  263 DVSTNSLV-STWPMGST-VEDQ--QVGCLWQKDHLITVSLSGTINYLNPSD------PS---------------------  311 (603)
T ss_pred             EeeccceE-EEeecCCc-hhce--EEEEEEeCCeEEEEEcCcEEEEecccC------CC---------------------
Confidence            88877632 11000000 0000  000000011333444444444333320      00                     


Q ss_pred             HhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCC------CCCCCccccccccccccccC
Q 004745          422 QLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARS------EPRTGRVLSLSDIIYRSEAN  495 (732)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~------~~~~g~~~~~~~~~~~~~~~  495 (732)
                       ......+|...+.++..+|+           +.+|.+++.|+.+.-|+.....      ..++..+..|..-....-..
T Consensus       312 -~~~~i~GHnK~ITaLtv~~d-----------~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t  379 (603)
T KOG0318|consen  312 -VLKVISGHNKSITALTVSPD-----------GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT  379 (603)
T ss_pred             -hhheecccccceeEEEEcCC-----------CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence             01111234444777788887           6889999999999999854311      12333333221100000000


Q ss_pred             CCCCCCCCCCCCCCCChhhh--hhhc--ccCCCCCCCCcccccccccCCcce------eeccCCCCccccccCCCCCCCC
Q 004745          496 SDASQDGPRSEREDSDYDEE--VEVD--FHTSVPGDEGRDVEANFLHGSLNV------RIHRRGDSARETVDANGSSGSP  565 (732)
Q Consensus       496 ~~~s~d~~~~~~~~~~~~~~--~~~~--~~~~~s~~~d~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~d~~~l~  565 (732)
                      ..+-..-...+-.++.+...  .+..  .+-++..+.+...-+-...+-.++      ........+.+++++||++++|
T Consensus       380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va  459 (603)
T KOG0318|consen  380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA  459 (603)
T ss_pred             EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence            00000000000000000000  0011  111111111112111111111111      1111334468999999999999


Q ss_pred             CCCCCCCCCccccccc-cccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEec-CcccEEE
Q 004745          566 SSSSQNDRIPYQPETV-IDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLG-DEAVVNC  643 (732)
Q Consensus       566 ~~~~~~~~~~~~~~~~-~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~g-H~~~V~~  643 (732)
                      .|+.++...+|...+. ......+..|..++++|.    +|||+.|||+|...+.|-+||+++.+....--+ |++.|++
T Consensus       460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va----ySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~  535 (603)
T KOG0318|consen  460 VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA----YSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINC  535 (603)
T ss_pred             EecccceEEEEEecCCcccceeeeecccCCceEEE----ECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEE
Confidence            9998888888887763 345557788999988887    799999999999999999999999998555555 9999999


Q ss_pred             EeecCCCCeEEEecCCCcEEEEcCCCCCCc-cccCCCCCCCc----hhHHHHHHHHHHHhhhccccc
Q 004745          644 VQCHPFDCVVATSGIDNTIKIWTPSASVPS-IVSGGAAGPDT----ADVLEAMESNQRKLSRNREHS  705 (732)
Q Consensus       644 v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~-~~~~gh~~~~~----~~~~~~~~~~~~~~~~~~~~~  705 (732)
                      |+|+|+..++||||.|-+|.||+++..... .....|.+.++    .+-..+++..+|.-.++|..+
T Consensus       536 ~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  536 VAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence            999999999999999999999999876644 44555776664    345566777777777777643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1e-38  Score=319.91  Aligned_cols=554  Identities=14%  Similarity=0.142  Sum_probs=342.3

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC--
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--   84 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~--~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~--   84 (732)
                      -++-+.+.-|..+++|++|+++|+++|+|-  ....++||++.....+..| ..|+-.|+|++|+|.  ++++++.+.  
T Consensus        68 ~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEf-vdHKY~vtcvaFsp~--~kyvvSVGsQH  144 (1080)
T KOG1408|consen   68 CTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEF-VDHKYNVTCVAFSPG--NKYVVSVGSQH  144 (1080)
T ss_pred             cchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhh-hhccccceeeeecCC--CcEEEeecccc
Confidence            345556677889999999999999999984  6778999999999999999 799999999999998  589998875  


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC-----
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH-----  159 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-----  159 (732)
                      |-.|.+||.+...           ...-..-...|..++|+.++ .+++|.+. ..|++|.++.++......+..     
T Consensus       145 DMIVnv~dWr~N~-----------~~asnkiss~Vsav~fsEdg-SYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~  211 (1080)
T KOG1408|consen  145 DMIVNVNDWRVNS-----------SGASNKISSVVSAVAFSEDG-SYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYF  211 (1080)
T ss_pred             ceEEEhhhhhhcc-----------cccccccceeEEEEEEccCC-ceeeeeee-eeEEEEEeeccccccCCccccchhhh
Confidence            6678899887422           12222345678999999855 89988875 689999998776321111000     


Q ss_pred             --cccceEEeeccCC---------------ccccccC-------CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004745          160 --QECRNILLDLRCG---------------AKRSLAD-------PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  215 (732)
Q Consensus       160 --~~~~~~~~~~~~~---------------~~~~~~~-------~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~  215 (732)
                        .-....+....++               ....+..       ..-......||+.+   .++|++|+.+|+|++|+..
T Consensus       212 lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs---~r~I~cgCa~g~vrlFnp~  288 (1080)
T KOG1408|consen  212 LGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS---SRLIACGCAKGMVRLFNPE  288 (1080)
T ss_pred             ccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee---cceEEEeeccceeeecCcc
Confidence              0000001111111               1000000       00112234566666   4599999999999999998


Q ss_pred             CCCCCcccccCCCCCCccccc-ccccccc---CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCccee---ee
Q 004745          216 MLPPLTSCQKRMSPPPCVNYF-CPMHLSE---HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR---YT  288 (732)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~  288 (732)
                      +..-..+++.......-+... .+.++..   .+.-. ....+.|++....|.+...|..++|||++..+++...   ..
T Consensus       289 tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fP-D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly  367 (1080)
T KOG1408|consen  289 TLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFP-DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY  367 (1080)
T ss_pred             hhhhccccccccccccchhhcccccccccccCcccCC-ceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeee
Confidence            877666665433221111110 0111100   11111 2457899999999999999999999999987654332   23


Q ss_pred             cCCCCceeeecc-CCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC
Q 004745          289 VGDASKIMSFTP-TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI  367 (732)
Q Consensus       289 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  367 (732)
                      |...+..+...| ..+..     ..+-.|.+-    +++++.|++|++     |+++-+..        +.++..  +..
T Consensus       368 HS~ciW~Ve~~p~nv~~~-----~~aclp~~c----F~TCSsD~TIRl-----W~l~~ctn--------n~vyrR--Nil  423 (1080)
T KOG1408|consen  368 HSACIWDVENLPCNVHSP-----TAACLPRGC----FTTCSSDGTIRL-----WDLAFCTN--------NQVYRR--NIL  423 (1080)
T ss_pred             ccceeeeeccccccccCc-----ccccCCccc----eeEecCCCcEEE-----eecccccc--------cceeec--ccc
Confidence            333332222222 11100     001112222    125666666666     55553221        011000  000


Q ss_pred             CCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhH
Q 004745          368 GPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA  447 (732)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  447 (732)
                      +.            +.....+.......+.+.....            ..+.    ....-.....+++++.+|+     
T Consensus       424 s~------------~l~ki~y~d~~~q~~~d~~~~~------------fdka----~~s~~d~r~G~R~~~vSp~-----  470 (1080)
T KOG1408|consen  424 SA------------NLSKIPYEDSTQQIMHDASAGI------------FDKA----LVSTCDSRFGFRALAVSPD-----  470 (1080)
T ss_pred             hh------------hhhcCccccCchhhhhhccCCc------------cccc----chhhcCcccceEEEEECCC-----
Confidence            00            0000000000000000000000            0000    0000011123677888998     


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCC-----CCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccC
Q 004745          448 EKVENIKKHIAAAETEKNNKANDGGAR-----SEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHT  522 (732)
Q Consensus       448 ~~~~~~~~~l~~~~~d~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~  522 (732)
                            +++||++...+++++++....     .+.+..+++.           +.+|-.-               ...++
T Consensus       471 ------gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilc-----------LeyS~p~---------------~~~kL  518 (1080)
T KOG1408|consen  471 ------GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILC-----------LEYSFPV---------------LTNKL  518 (1080)
T ss_pred             ------cceecccCccCceEEEEehhhhhhhheecccceeEE-----------EeecCch---------------hhhHh
Confidence                  899999999999999874321     1222222222           2222110               12388


Q ss_pred             CCCCCCCcccccccc--cCCcceeeccCCCCc------------------------------------------------
Q 004745          523 SVPGDEGRDVEANFL--HGSLNVRIHRRGDSA------------------------------------------------  552 (732)
Q Consensus       523 ~~s~~~d~~~~~~~~--~~~~~~~~~~~~~~v------------------------------------------------  552 (732)
                      +++++.|+.|.++++  +-.+..++.+|...|                                                
T Consensus       519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT  598 (1080)
T KOG1408|consen  519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT  598 (1080)
T ss_pred             hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccce
Confidence            999999999999887  233444455544444                                                


Q ss_pred             -cccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEE
Q 004745          553 -RETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLI  631 (732)
Q Consensus       553 -~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~  631 (732)
                       ..++..|..+++++++.+...+|++... +++++.|+|..+....+..+.. .|.|-|||+.+.|.++.++|.-+|+|+
T Consensus       599 lYDm~Vdp~~k~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~l-DPSgiY~atScsdktl~~~Df~sgEcv  676 (1080)
T KOG1408|consen  599 LYDMAVDPTSKLVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVIL-DPSGIYLATSCSDKTLCFVDFVSGECV  676 (1080)
T ss_pred             EEEeeeCCCcceEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEE-CCCccEEEEeecCCceEEEEeccchhh
Confidence             5566666666888887777888898888 8999999987666333444554 999999999999999999999999999


Q ss_pred             EEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCc
Q 004745          632 KMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPS  673 (732)
Q Consensus       632 ~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~  673 (732)
                      ++..||++.||++.|++|.+.|+|++.||.|.||.+.....+
T Consensus       677 A~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mii  718 (1080)
T KOG1408|consen  677 AQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMII  718 (1080)
T ss_pred             hhhcCcchheeeeeecccchhheeecCCceEEEEECchhHhH
Confidence            999999999999999999999999999999999998764443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.5e-38  Score=306.64  Aligned_cols=211  Identities=18%  Similarity=0.299  Sum_probs=179.5

Q ss_pred             ccccEeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745            9 LSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~-~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      -+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++ .+|..+|.+++|++.  |..++|++.|+
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~--g~~fLS~sfD~  280 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNC--GTSFLSASFDR  280 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhcccc--CCeeeeeecce
Confidence            356789999999999999999 889999999999999999876 8899999 799999999999999  59999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      .|++||++++..          +..+. ....++++.|+|++.+.|++|+.|+.|+.||+++++                
T Consensus       281 ~lKlwDtETG~~----------~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k----------------  333 (503)
T KOG0282|consen  281 FLKLWDTETGQV----------LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK----------------  333 (503)
T ss_pred             eeeeeccccceE----------EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH----------------
Confidence            999999998532          44443 245789999999988999999999999999999987                


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                               .+.....|...|..+.|-++ +.++++.+.|+.++||+.+...++......                 ..|
T Consensus       334 ---------vvqeYd~hLg~i~~i~F~~~-g~rFissSDdks~riWe~~~~v~ik~i~~~-----------------~~h  386 (503)
T KOG0282|consen  334 ---------VVQEYDRHLGAILDITFVDE-GRRFISSSDDKSVRIWENRIPVPIKNIADP-----------------EMH  386 (503)
T ss_pred             ---------HHHHHHhhhhheeeeEEccC-CceEeeeccCccEEEEEcCCCccchhhcch-----------------hhc
Confidence                     34444567779999999998 789999999999999999877655433110                 112


Q ss_pred             ccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                         ...++..+|+++++++-+.|+.|.||.+..
T Consensus       387 ---smP~~~~~P~~~~~~aQs~dN~i~ifs~~~  416 (503)
T KOG0282|consen  387 ---TMPCLTLHPNGKWFAAQSMDNYIAIFSTVP  416 (503)
T ss_pred             ---cCcceecCCCCCeehhhccCceEEEEeccc
Confidence               367899999999999999999999997544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-37  Score=292.62  Aligned_cols=209  Identities=19%  Similarity=0.202  Sum_probs=167.9

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC---eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~---~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      +..++|..|++.|.-+.||++|++|||++.|.+..||++...   +..+++ .+|..+|..+.|||+  +++|++|+.|.
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPD--dryLlaCg~~e  291 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPD--DRYLLACGFDE  291 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCC--CCeEEecCchH
Confidence            456778899999999999999999999999999999987544   346666 799999999999999  49999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      .+.+||+.++....         ..-.+|...+.+.+|.||+ ..|++|+.|+.|..||+.....-             -
T Consensus       292 ~~~lwDv~tgd~~~---------~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~-------------~  348 (519)
T KOG0293|consen  292 VLSLWDVDTGDLRH---------LYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILG-------------N  348 (519)
T ss_pred             heeeccCCcchhhh---------hcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhh-------------c
Confidence            99999999864321         1122356899999999965 78899999999999999765411             0


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                      |       ..+     ....|.+++..+| |+++++.+.|..|++++..+.......                    ..+
T Consensus       349 W-------~gv-----r~~~v~dlait~D-gk~vl~v~~d~~i~l~~~e~~~dr~li--------------------se~  395 (519)
T KOG0293|consen  349 W-------EGV-----RDPKVHDLAITYD-GKYVLLVTVDKKIRLYNREARVDRGLI--------------------SEE  395 (519)
T ss_pred             c-------ccc-----ccceeEEEEEcCC-CcEEEEEecccceeeechhhhhhhccc--------------------ccc
Confidence            0       000     1126899999999 788888889999999998865433211                    112


Q ss_pred             ccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                        .+|+++.+|.+++++++.-.+..+++||++.
T Consensus       396 --~~its~~iS~d~k~~LvnL~~qei~LWDl~e  426 (519)
T KOG0293|consen  396 --QPITSFSISKDGKLALVNLQDQEIHLWDLEE  426 (519)
T ss_pred             --CceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence              2599999999999999999999999999886

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-37  Score=311.99  Aligned_cols=439  Identities=12%  Similarity=0.096  Sum_probs=332.8

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      .+.+-+++.||.+.|+++.|+.|.++|++|+.|-+++||++...+-  .+.+ .+|++.|.++-|..++  ..+++.+.|
T Consensus       134 pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l-~gHkd~VvacfF~~~~--~~l~tvskd  210 (893)
T KOG0291|consen  134 PFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYAL-NGHKDYVVACFFGANS--LDLYTVSKD  210 (893)
T ss_pred             cceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEec-cCCCcceEEEEeccCc--ceEEEEecC
Confidence            5667788999999999999999999999999999999999886654  4455 7999999999999985  789999999


Q ss_pred             CcEEEEEcCCCCCCCCC-----------------CCCCCC-------ceeeccccCceeEEEEecCCCcEEEEEeCCCcE
Q 004745           86 AEVRLFNLSRFSGRGLD-----------------DNAITP-------SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL  141 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~-----------------~~~~~~-------~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  141 (732)
                      |.+.+|...........                 ..+...       ..-+......|++.+|++ +.++|+++-..|..
T Consensus       211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f  289 (893)
T KOG0291|consen  211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEF  289 (893)
T ss_pred             ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCCee
Confidence            99999988732111100                 000000       111222236799999999 67999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-CeEEEEECCCCCCC
Q 004745          142 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPL  220 (732)
Q Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-g~v~iwd~~~~~~~  220 (732)
                      .+|.+.....+                         .........|..++|+.. |.+|+.|+.. |.+-||+.++..-+
T Consensus       290 ~LyelP~f~li-------------------------h~LSis~~~I~t~~~N~t-GDWiA~g~~klgQLlVweWqsEsYV  343 (893)
T KOG0291|consen  290 GLYELPDFNLI-------------------------HSLSISDQKILTVSFNST-GDWIAFGCSKLGQLLVWEWQSESYV  343 (893)
T ss_pred             EEEecCCceEE-------------------------EEeecccceeeEEEeccc-CCEEEEcCCccceEEEEEeecccee
Confidence            99998776522                         111122347889999988 7899998876 89999999876433


Q ss_pred             cccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeecc
Q 004745          221 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  300 (732)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  300 (732)
                      .+.                    +||.. .+++++++|||+++++|+.||.|+|||.+++.+..                
T Consensus       344 lKQ--------------------QgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v----------------  386 (893)
T KOG0291|consen  344 LKQ--------------------QGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV----------------  386 (893)
T ss_pred             eec--------------------ccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE----------------
Confidence            322                    67777 59999999999999999999999999999854322                


Q ss_pred             CCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHH
Q 004745          301 TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRA  380 (732)
Q Consensus       301 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  380 (732)
                      ++..|...+..+.|...|+.+.   +++.|++++.     |++....+|.        .+                    
T Consensus       387 TFteHts~Vt~v~f~~~g~~ll---ssSLDGtVRA-----wDlkRYrNfR--------Tf--------------------  430 (893)
T KOG0291|consen  387 TFTEHTSGVTAVQFTARGNVLL---SSSLDGTVRA-----WDLKRYRNFR--------TF--------------------  430 (893)
T ss_pred             EeccCCCceEEEEEEecCCEEE---EeecCCeEEe-----eeecccceee--------ee--------------------
Confidence            5667778888888888888888   8888888887     7776555431        00                    


Q ss_pred             HHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHH
Q 004745          381 ALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAA  460 (732)
Q Consensus       381 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~  460 (732)
                                                                                ..|..                 
T Consensus       431 ----------------------------------------------------------t~P~p-----------------  435 (893)
T KOG0291|consen  431 ----------------------------------------------------------TSPEP-----------------  435 (893)
T ss_pred             ----------------------------------------------------------cCCCc-----------------
Confidence                                                                      01110                 


Q ss_pred             HhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCC-cccccccc-c
Q 004745          461 ETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEG-RDVEANFL-H  538 (732)
Q Consensus       461 ~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d-~~~~~~~~-~  538 (732)
                                       .+-             +.++.-|.|                  .++.+|+.| -.|.+|.+ +
T Consensus       436 -----------------~Qf-------------scvavD~sG------------------elV~AG~~d~F~IfvWS~qT  467 (893)
T KOG0291|consen  436 -----------------IQF-------------SCVAVDPSG------------------ELVCAGAQDSFEIFVWSVQT  467 (893)
T ss_pred             -----------------eee-------------eEEEEcCCC------------------CEEEeeccceEEEEEEEeec
Confidence                             000             011112223                  455555554 45889998 6


Q ss_pred             CCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCC
Q 004745          539 GSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDG  618 (732)
Q Consensus       539 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg  618 (732)
                      |+++-.+.+|+.+|.+++|+|++..||+++=|++.++|+.-.....+.++. +...++.+.    |+|||+-||.+.-||
T Consensus       468 GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vs----frPdG~elaVaTldg  542 (893)
T KOG0291|consen  468 GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVS----FRPDGKELAVATLDG  542 (893)
T ss_pred             CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEE----EcCCCCeEEEEEecc
Confidence            899999999999999999999999999998888888899876544555554 444444444    599999999999999


Q ss_pred             cEEEEEcCcccEEEEEec--------------------CcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccC
Q 004745          619 RWFIWEKQTGRLIKMLLG--------------------DEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG  677 (732)
Q Consensus       619 ~i~iWd~~tg~~~~~l~g--------------------H~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~  677 (732)
                      .|-+||.+.+..+..+.|                    -....+.+++|+||.+|++||....|+|+++.++-.+..|.
T Consensus       543 qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfq  621 (893)
T KOG0291|consen  543 QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQ  621 (893)
T ss_pred             eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEE
Confidence            999999988766644432                    12578899999999999999999999999999999887764

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-37  Score=285.97  Aligned_cols=197  Identities=16%  Similarity=0.279  Sum_probs=170.5

Q ss_pred             hhhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745            4 SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus         4 ~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      .++.++.+.+.+.||..+|+.+-|+|+-..+++++.|++|++||..++++...+ ++|...|..++|+..  |++|++|+
T Consensus        93 ~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~--Gk~l~tcS  169 (406)
T KOG0295|consen   93 LWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDAS--GKYLATCS  169 (406)
T ss_pred             hcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEecC--ccEEEecC
Confidence            466777888889999999999999999999999999999999999999998888 899999999999998  69999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      .|=.+++||..+.         ..+++.+.+|...|.++.|-|.+ +++++++.|.+|+.|++.++-             
T Consensus       170 sDl~~~LWd~~~~---------~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~-------------  226 (406)
T KOG0295|consen  170 SDLSAKLWDFDTF---------FRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGY-------------  226 (406)
T ss_pred             CccchhheeHHHH---------HHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccce-------------
Confidence            9999999999863         24578889999999999999965 999999999999999999986             


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                                  .+...++|...|..+..+.| |.++++++.|.+|++|-+.+++....+                    
T Consensus       227 ------------cv~t~~~h~ewvr~v~v~~D-Gti~As~s~dqtl~vW~~~t~~~k~~l--------------------  273 (406)
T KOG0295|consen  227 ------------CVKTFPGHSEWVRMVRVNQD-GTIIASCSNDQTLRVWVVATKQCKAEL--------------------  273 (406)
T ss_pred             ------------eEEeccCchHhEEEEEecCC-eeEEEecCCCceEEEEEeccchhhhhh--------------------
Confidence                        34455667779999999998 899999999999999999987433322                    


Q ss_pred             CCCccccEEEEEEcCCC
Q 004745          244 HGRSSLHLTHVTFSPNG  260 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g  260 (732)
                      ..|.- +|-+++|.|..
T Consensus       274 R~hEh-~vEci~wap~~  289 (406)
T KOG0295|consen  274 REHEH-PVECIAWAPES  289 (406)
T ss_pred             hcccc-ceEEEEecccc
Confidence            34444 68899988754

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2e-36  Score=274.90  Aligned_cols=208  Identities=24%  Similarity=0.330  Sum_probs=180.0

Q ss_pred             ccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~-~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      ++..+.||++.|+.+.|+|+|.+||||+.|..|.+|++... +-...+ ++|.++|..+.|.++  +..|++++.|.+|+
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d--~s~i~S~gtDk~v~  115 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRD--GSHILSCGTDKTVR  115 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee-ccccceeEeeeeccC--CCEEEEecCCceEE
Confidence            45567899999999999999999999999999999996543 444555 799999999999999  59999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  169 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  169 (732)
                      .||.++++          .++.+++|..-|+++..+.-+..++.+++.||++++||+++...+                 
T Consensus       116 ~wD~~tG~----------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~-----------------  168 (338)
T KOG0265|consen  116 GWDAETGK----------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI-----------------  168 (338)
T ss_pred             EEecccce----------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh-----------------
Confidence            99999853          378899999999999876667789999999999999999987632                 


Q ss_pred             cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004745          170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                               ........++++.|.-. +..+.+|+-|+.|++||++....+..+                    .||.+ 
T Consensus       169 ---------~t~~~kyqltAv~f~d~-s~qv~sggIdn~ikvWd~r~~d~~~~l--------------------sGh~D-  217 (338)
T KOG0265|consen  169 ---------KTFENKYQLTAVGFKDT-SDQVISGGIDNDIKVWDLRKNDGLYTL--------------------SGHAD-  217 (338)
T ss_pred             ---------hccccceeEEEEEeccc-ccceeeccccCceeeeccccCcceEEe--------------------ecccC-
Confidence                     11123458999999987 789999999999999999987655544                    77887 


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +|+.+..+|+|.++.+-+.|.++++||++.
T Consensus       218 tIt~lsls~~gs~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  218 TITGLSLSRYGSFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             ceeeEEeccCCCccccccccceEEEEEecc
Confidence            699999999999999999999999999987

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2e-35  Score=265.71  Aligned_cols=215  Identities=22%  Similarity=0.302  Sum_probs=183.0

Q ss_pred             hhccccEeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCC-----CCeeEEEEccCCCcCeEEEEEecCCCCCEEE
Q 004745            7 RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYS-----SRKLLHSIETGHSANVFCTKFVPETSDELVV   80 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~-----~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~   80 (732)
                      +.+.+..+|++|++.|+.++..+. .+.|++++.|.++.+|++.     .|..++.+ .+|...|..+..+++  |++.+
T Consensus         3 e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~d--g~~al   79 (315)
T KOG0279|consen    3 EQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSD--GNFAL   79 (315)
T ss_pred             hhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEccC--CceEE
Confidence            345677889999999999999986 4689999999999999875     46677888 899999999999999  59999


Q ss_pred             EEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004745           81 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        81 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  160 (732)
                      +++.|+++++||+.++          ++.+.|.+|...|.+++|+|++ +.+++|+.|.+|++|++......        
T Consensus        80 S~swD~~lrlWDl~~g----------~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~--------  140 (315)
T KOG0279|consen   80 SASWDGTLRLWDLATG----------ESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKY--------  140 (315)
T ss_pred             eccccceEEEEEecCC----------cEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEE--------
Confidence            9999999999999975          3378999999999999999965 88999999999999998665311        


Q ss_pred             ccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccc
Q 004745          161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  239 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (732)
                                     .+.. ..+...|.++.|+|.. ...|++++.|++|++||+++.+....+                
T Consensus       141 ---------------t~~~-~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~----------------  188 (315)
T KOG0279|consen  141 ---------------TIHE-DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF----------------  188 (315)
T ss_pred             ---------------EEec-CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc----------------
Confidence                           1111 1125699999999984 458999999999999999987765544                


Q ss_pred             ccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          240 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       240 ~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                          .||.+ .++.+++||||..+++|+.||.+.+||++.+
T Consensus       189 ----~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~  224 (315)
T KOG0279|consen  189 ----IGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEG  224 (315)
T ss_pred             ----ccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence                66766 5999999999999999999999999999984

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.1e-35  Score=275.11  Aligned_cols=211  Identities=16%  Similarity=0.242  Sum_probs=179.6

Q ss_pred             ccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004745           11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL   90 (732)
Q Consensus        11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v   90 (732)
                      -+.+|..|+++|.+++.+|+.+++|||+.|....||++.++.....+ .+|+..|+++.|+.+  |.+|+||+-+|.|+|
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fshd--gtlLATGdmsG~v~v  132 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSHD--GTLLATGDMSGKVLV  132 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEccC--ceEEEecCCCccEEE
Confidence            45678999999999999999999999999999999999999999888 899999999999999  599999999999999


Q ss_pred             EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004745           91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  170 (732)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  170 (732)
                      |+..++..          ...+..--..+.=+.|+| -.++|+.|+.||.+-+|.+.+...                   
T Consensus       133 ~~~stg~~----------~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~-------------------  182 (399)
T KOG0296|consen  133 FKVSTGGE----------QWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQAL-------------------  182 (399)
T ss_pred             EEcccCce----------EEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcce-------------------
Confidence            99997543          233434456678889999 559999999999999999987542                   


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  250 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (732)
                            .....+|..++++=.|.|+ |++++++..||+|++|++.+++++.++..                    ..+..
T Consensus       183 ------~kv~~Gh~~~ct~G~f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~--------------------~e~~~  235 (399)
T KOG0296|consen  183 ------CKVMSGHNSPCTCGEFIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQ--------------------AEGLE  235 (399)
T ss_pred             ------eeEecCCCCCcccccccCC-CceEEEEecCceEEEEecCCCceeEEecc--------------------cccCc
Confidence                  2334567779999999999 89999999999999999999987766521                    11224


Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          251 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       251 i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      .+++.++..+..++.|+.++.+++-+..+++
T Consensus       236 ~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK  266 (399)
T KOG0296|consen  236 LPCISLNLAGSTLTKGNSEGVACGVNNGSGK  266 (399)
T ss_pred             CCccccccccceeEeccCCccEEEEccccce
Confidence            6788889999999999999999999888765

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.2e-36  Score=302.67  Aligned_cols=485  Identities=14%  Similarity=0.133  Sum_probs=348.6

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      .+...|++++.||+|.+|++....|.+.+-++.....++++  ..+..|.|++|||+  |.+++.|. .+.+.||.....
T Consensus        53 e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f--~fk~~v~~i~fSPn--g~~fav~~-gn~lqiw~~P~~  127 (893)
T KOG0291|consen   53 ETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRF--NFKRGVGAIKFSPN--GKFFAVGC-GNLLQIWHAPGE  127 (893)
T ss_pred             ecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEE--eecCccceEEECCC--CcEEEEEe-cceeEEEecCcc
Confidence            47789999999999999999999999999998888888887  46788999999999  47776654 578999998753


Q ss_pred             CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004745           97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  176 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (732)
                      ....  -+.+...+++.+|.+.|+++.|+. +.++|++|+.|.++++|+++..+..                       .
T Consensus       128 ~~~~--~~pFvl~r~~~g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~k~~-----------------------~  181 (893)
T KOG0291|consen  128 IKNE--FNPFVLHRTYLGHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGNKNL-----------------------F  181 (893)
T ss_pred             hhcc--cCcceEeeeecCCccceeEEEecc-CCceEEeccccceEEEEEecccccc-----------------------c
Confidence            3211  122344567889999999999998 5599999999999999999877632                       1


Q ss_pred             ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccccc----------------CCCCCCccccccccc
Q 004745          177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK----------------RMSPPPCVNYFCPMH  240 (732)
Q Consensus       177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~  240 (732)
                      .....+|..+|.++-|..+ ..-+++.+.||.+.+|-.....+ .....                ..+...-.-.....+
T Consensus       182 ~~~l~gHkd~VvacfF~~~-~~~l~tvskdG~l~~W~~~~~P~-~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~  259 (893)
T KOG0291|consen  182 TYALNGHKDYVVACFFGAN-SLDLYTVSKDGALFVWTCDLRPP-ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKH  259 (893)
T ss_pred             eEeccCCCcceEEEEeccC-cceEEEEecCceEEEEEecCCCc-ccccccccccccccccccccchhhhcceEEEEEEee
Confidence            2234568889999999998 67899999999999998763211 00000                000000000111111


Q ss_pred             cccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccc
Q 004745          241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIR  320 (732)
Q Consensus       241 ~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  320 (732)
                      ...  .....+++.+|++..+.|++|-..|...+|++........+-..                +.++..+.|...|..
T Consensus       260 ~ln--~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis----------------~~~I~t~~~N~tGDW  321 (893)
T KOG0291|consen  260 YLN--QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS----------------DQKILTVSFNSTGDW  321 (893)
T ss_pred             eec--ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecc----------------cceeeEEEecccCCE
Confidence            211  12235999999999999999999999999999885433322222                224455556666666


Q ss_pred             cccccccCcc-hhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhH
Q 004745          321 VRGEVATGLG-KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDC  399 (732)
Q Consensus       321 ~~~~~~~~~d-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  399 (732)
                      +|   .++.. +.+.+     |+                                             |....|.--+++
T Consensus       322 iA---~g~~klgQLlV-----we---------------------------------------------WqsEsYVlKQQg  348 (893)
T KOG0291|consen  322 IA---FGCSKLGQLLV-----WE---------------------------------------------WQSESYVLKQQG  348 (893)
T ss_pred             EE---EcCCccceEEE-----EE---------------------------------------------eeccceeeeccc
Confidence            66   22221 11111     32                                             222222222222


Q ss_pred             HHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 004745          400 YNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRT  479 (732)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~  479 (732)
                      |...                              +.+++++||           +++++++..|+.||+|+...      
T Consensus       349 H~~~------------------------------i~~l~YSpD-----------gq~iaTG~eDgKVKvWn~~S------  381 (893)
T KOG0291|consen  349 HSDR------------------------------ITSLAYSPD-----------GQLIATGAEDGKVKVWNTQS------  381 (893)
T ss_pred             cccc------------------------------eeeEEECCC-----------CcEEEeccCCCcEEEEeccC------
Confidence            2222                              667788998           78999999999999998432      


Q ss_pred             Ccccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCC--cccc
Q 004745          480 GRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDS--ARET  555 (732)
Q Consensus       480 g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~--v~~~  555 (732)
                      |-+  +.++.-|+..  .+.|+..|                  +.+.+.+-|++++.|++..-...+......+  -.|+
T Consensus       382 gfC--~vTFteHts~Vt~v~f~~~g------------------~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscv  441 (893)
T KOG0291|consen  382 GFC--FVTFTEHTSGVTAVQFTARG------------------NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCV  441 (893)
T ss_pred             ceE--EEEeccCCCceEEEEEEecC------------------CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEE
Confidence            222  2255556655  77888888                  8999999999999999855444443333333  3677


Q ss_pred             ccCCCCCCCCCCCCCC-CCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcc-cEEEE
Q 004745          556 VDANGSSGSPSSSSQN-DRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTG-RLIKM  633 (732)
Q Consensus       556 ~~s~d~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg-~~~~~  633 (732)
                      +..|-|..+..|+.+. +..+|+..+ ++++-.+.||.++|.++.    |+|+|..|||||+|.+||+||+-.. ..+.+
T Consensus       442 avD~sGelV~AG~~d~F~IfvWS~qT-GqllDiLsGHEgPVs~l~----f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt  516 (893)
T KOG0291|consen  442 AVDPSGELVCAGAQDSFEIFVWSVQT-GQLLDILSGHEGPVSGLS----FSPDGSLLASGSWDKTVRIWDIFSSSGTVET  516 (893)
T ss_pred             EEcCCCCEEEeeccceEEEEEEEeec-CeeeehhcCCCCcceeeE----EccccCeEEeccccceEEEEEeeccCceeee
Confidence            7778788777665332 455598888 899999999999966555    6999999999999999999998654 45566


Q ss_pred             EecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCC
Q 004745          634 LLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGG  678 (732)
Q Consensus       634 l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~g  678 (732)
                      |. +...|++|+|+|+|+.||.+.-||.|-+||+..+.+..+..|
T Consensus       517 l~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg  560 (893)
T KOG0291|consen  517 LE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG  560 (893)
T ss_pred             Ee-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence            66 788899999999999999999999999999999988866655

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.9e-36  Score=287.52  Aligned_cols=207  Identities=16%  Similarity=0.240  Sum_probs=165.1

Q ss_pred             cEeeeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCC--e--eEEEEc---------cCCCcCeEEEEEecCCCCC
Q 004745           12 ERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR--K--LLHSIE---------TGHSANVFCTKFVPETSDE   77 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~--~--~~~~~~---------~~h~~~V~~~~~s~~~~g~   77 (732)
                      .+.+. |+.+|.+.+|+|-.. +|++|+.|-+.++|++...  .  ....+.         ......|++++|+.+  |.
T Consensus       172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~--G~  248 (524)
T KOG0273|consen  172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND--GT  248 (524)
T ss_pred             eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC--CC
Confidence            34455 999999999999665 8999999999999998741  1  100110         122367999999998  69


Q ss_pred             EEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004745           78 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  157 (732)
Q Consensus        78 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  157 (732)
                      .|++|+.||.+++|+...           ..+.++..|+++|.++.|+.. +++|++++.|+++.+||..++...     
T Consensus       249 ~LatG~~~G~~riw~~~G-----------~l~~tl~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~~g~~~-----  311 (524)
T KOG0273|consen  249 LLATGSEDGEARIWNKDG-----------NLISTLGQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAHTGTVK-----  311 (524)
T ss_pred             eEEEeecCcEEEEEecCc-----------hhhhhhhccCCceEEEEEcCC-CCEEEeccCCccEEEEeccCceEE-----
Confidence            999999999999999884           337888999999999999995 499999999999999999887621     


Q ss_pred             CCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccc
Q 004745          158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  237 (732)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  237 (732)
                             ..+             .-|..+-..+.|-.+  .-+++++.|+.|+|+-+....|+.++              
T Consensus       312 -------q~f-------------~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~--------------  355 (524)
T KOG0273|consen  312 -------QQF-------------EFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTF--------------  355 (524)
T ss_pred             -------Eee-------------eeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceee--------------
Confidence                   111             112223345677654  47999999999999999988777666              


Q ss_pred             ccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                            .||++ +|.++.|.|.|.+|++++.|++++||++....
T Consensus       356 ------~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~  392 (524)
T KOG0273|consen  356 ------IGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSN  392 (524)
T ss_pred             ------ecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence                  67777 69999999999999999999999999988744

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.6e-36  Score=284.87  Aligned_cols=200  Identities=23%  Similarity=0.373  Sum_probs=171.0

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS   97 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~   97 (732)
                      -+.+|..+.|.|+|+.|++|+..|.+.+|+......... .+.|+.+|.++.|+++  |..++||+.+|.|++|+.... 
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti-lQaHDs~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnmn-  170 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI-LQAHDSPVRTMKWSHN--GTWMISGDKGGMIKYWQPNMN-  170 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHH-hhhhcccceeEEEccC--CCEEEEcCCCceEEecccchh-
Confidence            356899999999999999999999999999754433333 3799999999999999  599999999999999998742 


Q ss_pred             CCCCCCCCCCCceeecccc-CceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004745           98 GRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  176 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (732)
                                .++.++.|. ..|++++|+|.+ ..|++|+.||+|+|||....+..                        
T Consensus       171 ----------nVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee------------------------  215 (464)
T KOG0284|consen  171 ----------NVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEE------------------------  215 (464)
T ss_pred             ----------hhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchh------------------------
Confidence                      255666655 899999999954 88999999999999999877631                        


Q ss_pred             ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004745          177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  256 (732)
Q Consensus       177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  256 (732)
                       ..+.+|...|.+++|+|. ..++++|+.|..|++||.+++..+.++                    .+|.. .|..+.|
T Consensus       216 -~vL~GHgwdVksvdWHP~-kgLiasgskDnlVKlWDprSg~cl~tl--------------------h~HKn-tVl~~~f  272 (464)
T KOG0284|consen  216 -RVLRGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWDPRSGSCLATL--------------------HGHKN-TVLAVKF  272 (464)
T ss_pred             -heeccCCCCcceeccCCc-cceeEEccCCceeEeecCCCcchhhhh--------------------hhccc-eEEEEEE
Confidence             123567889999999999 569999999999999999999666554                    66777 5999999


Q ss_pred             cCCCCEEEEEecCCeEEEEECCC
Q 004745          257 SPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       257 sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +|++++|++++.|..+++||+++
T Consensus       273 ~~n~N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  273 NPNGNWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             cCCCCeeEEccCCceEEEEehhH
Confidence            99999999999999999999886

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.1e-35  Score=255.78  Aligned_cols=207  Identities=23%  Similarity=0.334  Sum_probs=179.8

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      +..+.|.+|.++|+++.|+-||+|.++++.|.+|++|++..+.+++++ .+|...|..++.+.+.  ..|++|+.|..+.
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~Dn--skf~s~GgDk~v~   84 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSDN--SKFASCGGDKAVQ   84 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeeccccccc--cccccCCCCceEE
Confidence            356788999999999999999999999999999999999999999999 8999999999999884  8999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  169 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  169 (732)
                      +||+.+++          .++.+.+|...|+.++|+. ....+++|+.|.++++||.++....                 
T Consensus        85 vwDV~TGk----------v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~e-----------------  136 (307)
T KOG0316|consen   85 VWDVNTGK----------VDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFE-----------------  136 (307)
T ss_pred             EEEcccCe----------eeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCC-----------------
Confidence            99999853          3789999999999999998 5589999999999999999887632                 


Q ss_pred             cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004745          170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                            +++........|.++..+   ++.|++|+.||++|.||++.+......                    .+|   
T Consensus       137 ------PiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy--------------------~g~---  184 (307)
T KOG0316|consen  137 ------PIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDY--------------------FGH---  184 (307)
T ss_pred             ------ccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhh--------------------cCC---
Confidence                  333334455688888887   568999999999999999988654322                    223   


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +|+++.|+++++.+++++.|+++++.|-.+
T Consensus       185 pit~vs~s~d~nc~La~~l~stlrLlDk~t  214 (307)
T KOG0316|consen  185 PITSVSFSKDGNCSLASSLDSTLRLLDKET  214 (307)
T ss_pred             cceeEEecCCCCEEEEeeccceeeecccch
Confidence            699999999999999999999999887665

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.9e-36  Score=308.65  Aligned_cols=195  Identities=21%  Similarity=0.264  Sum_probs=152.5

Q ss_pred             EeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004745           13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN   92 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd   92 (732)
                      -++..-...++|..|++|+..||.|-.|..|++|.+...+ ++.+  .+.      ++.+.     +=+.+.|-.+.+-|
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~l--k~~------~~l~~-----~d~~sad~~~~~~D  437 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKL--KDA------SDLSN-----IDTESADVDVDMLD  437 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccc--cch------hhhcc-----ccccccchhhhhcc
Confidence            3444456789999999999999999999999999987653 2223  111      12221     22233444455566


Q ss_pred             cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004745           93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                      ....          .....+.+|.++|....|+|+. ++|++|++|+++|+|.+.+...                     
T Consensus       438 ~~~~----------~~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~---------------------  485 (707)
T KOG0263|consen  438 DDSS----------GTSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSC---------------------  485 (707)
T ss_pred             ccCC----------ceeEEeecCCCceeeeeecccc-cceeeccCCcceeeeeccccee---------------------
Confidence            5542          2256789999999999999955 9999999999999999998762                     


Q ss_pred             ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004745          173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  252 (732)
Q Consensus       173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (732)
                          +....+|..+|..+.|+|. |.++|+++.|++-++|.....++++.+                    .||-. .|.
T Consensus       486 ----~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRif--------------------aghls-DV~  539 (707)
T KOG0263|consen  486 ----LVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIF--------------------AGHLS-DVD  539 (707)
T ss_pred             ----EEEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchhhh--------------------ccccc-ccc
Confidence                2223478889999999998 899999999999999999987776555                    66766 499


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          253 HVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      |+.|+|++.|+++|+.|.+|++||+.+
T Consensus       540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~  566 (707)
T KOG0263|consen  540 CVSFHPNSNYVATGSSDRTVRLWDVST  566 (707)
T ss_pred             eEEECCcccccccCCCCceEEEEEcCC
Confidence            999999999999999999999999877

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.2e-34  Score=290.91  Aligned_cols=563  Identities=15%  Similarity=0.099  Sum_probs=343.1

Q ss_pred             ccEeeeccCCceeEEEEcCCCC---EEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEE-EC
Q 004745           11 QERELEGHQGCVNAISWNSKGS---LLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSG-AG   84 (732)
Q Consensus        11 ~~~~l~~h~~~V~~l~~s~dg~---~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~-~~   84 (732)
                      ...++.||..+|+|+.|-|+.+   ++++|+.|+.|++|.++...  ++..+ .+|...+.|+  ...   ..+.++ +.
T Consensus        46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~-~g~~~~~~cv--~a~---~~~~~~~~a  119 (764)
T KOG1063|consen   46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTI-QGHCKECVCV--VAR---SSVMTCKAA  119 (764)
T ss_pred             eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEee-cCcceeEEEE--Eee---eeEEEeecc
Confidence            4567899999999999999887   89999999999999998443  44555 4566555554  443   233333 68


Q ss_pred             CCcEEEEEcCCCCCCCC----------------------------------------CCCCCCCceeeccccCceeEEEE
Q 004745           85 DAEVRLFNLSRFSGRGL----------------------------------------DDNAITPSALYQCHTRRVKKLAV  124 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~----------------------------------------~~~~~~~~~~~~~h~~~v~~l~~  124 (732)
                      |+++.+||.+..+--+.                                        .......+..+.||.+.|.+++|
T Consensus       120 d~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f  199 (764)
T KOG1063|consen  120 DGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAF  199 (764)
T ss_pred             CceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhh
Confidence            99999999953220000                                        01112345678899999999999


Q ss_pred             ecCCC--cEEEEEeCCCcEEEEECCCCCCCCC-----CCCCCc-ccceEEeeccCCccccccCCCCCccceEEEEecCCC
Q 004745          125 EVGNP--HVVWSASEDGTLRQHDFRQGSSCPP-----AGSSHQ-ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  196 (732)
Q Consensus       125 ~p~~~--~~l~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  196 (732)
                      ...++  -+++++|.|..||+|.+.-......     ...... .....+.+.-.-....-....+|...|+++.|.|. 
T Consensus       200 ~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~-  278 (764)
T KOG1063|consen  200 ARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPE-  278 (764)
T ss_pred             hccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccc-
Confidence            87543  5788999999999999865542210     000000 00000000000000011223589999999999999 


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEE
Q 004745          197 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD  276 (732)
Q Consensus       197 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd  276 (732)
                      +..|++++.|.++.+|......-+-.-              ...+.+.++.........|+|+++.+++-+..|..++|.
T Consensus       279 ~~~LLSASaDksmiiW~pd~~tGiWv~--------------~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk  344 (764)
T KOG1063|consen  279 GLDLLSASADKSMIIWKPDENTGIWVD--------------VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK  344 (764)
T ss_pred             hhhheecccCcceEEEecCCccceEEE--------------EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence            778999999999999987654211100              011122333333589999999999999999999999998


Q ss_pred             CCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHh
Q 004745          277 VNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEAC  356 (732)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~  356 (732)
                      .+..             ......|...||...|..+++.|.|.++.   +++.|.+-++...  |    |+.-. -.+..
T Consensus       345 t~d~-------------~~w~~~~~iSGH~~~V~dv~W~psGeflL---svs~DQTTRlFa~--w----g~q~~-wHEia  401 (764)
T KOG1063|consen  345 TKDK-------------TFWTQEPVISGHVDGVKDVDWDPSGEFLL---SVSLDQTTRLFAR--W----GRQQE-WHEIA  401 (764)
T ss_pred             ccCc-------------cceeeccccccccccceeeeecCCCCEEE---Eeccccceeeecc--c----ccccc-eeeec
Confidence            3331             12334567789999999999999999999   9999999998444  3    11000 01112


Q ss_pred             HHHHhcccCC-CCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHH
Q 004745          357 NEVLEGHLSG-IGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIA  435 (732)
Q Consensus       357 ~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (732)
                      ...+.||.-. ++--.....|++++..+..|.++......                      +.+..+......      
T Consensus       402 RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv----------------------~~l~~i~g~~~~------  453 (764)
T KOG1063|consen  402 RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV----------------------KSLMAICGKCFK------  453 (764)
T ss_pred             ccccccccceeeehccCCceeeecccceeeeeecCcHHHH----------------------HHHHHHhCcccc------
Confidence            2233333221 00000012578888888888877431000                      000000000000      


Q ss_pred             HhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCC-hhh
Q 004745          436 AQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSD-YDE  514 (732)
Q Consensus       436 ~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~-~~~  514 (732)
                      .....|+.                                  .+-..+.++        +-++-|+..++-.+.-+ .++
T Consensus       454 ~~~~~p~g----------------------------------A~VpaLGLS--------nKa~~~~e~~~G~~~~~~~et  491 (764)
T KOG1063|consen  454 GSDELPDG----------------------------------ANVPALGLS--------NKAFFPGETNTGGEAAVCAET  491 (764)
T ss_pred             Cchhcccc----------------------------------ccccccccc--------CCCCcccccccccccceeeec
Confidence            00000110                                  000000000        01111100000000000 000


Q ss_pred             hhhhcc-cCCCCCCCCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCc-----cccccccccceeE
Q 004745          515 EVEVDF-HTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIP-----YQPETVIDMKQRY  588 (732)
Q Consensus       515 ~~~~~~-~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~  588 (732)
                      ...... .+..-.-+|. +.. +.-.....++++|...|.+++.+|+++.+|+++.+...+-     |+... +..++.+
T Consensus       492 ~~~~~p~~L~ePP~Edq-Lq~-~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-W~~~~~L  568 (764)
T KOG1063|consen  492 PLAAAPCELTEPPTEDQ-LQQ-NTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-WLQVQEL  568 (764)
T ss_pred             ccccCchhccCCChHHH-HHH-hccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-hhhhhee
Confidence            000000 0000000000 000 0012235688999999999999999999999986665543     77766 8888899


Q ss_pred             eeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCccc----EEEEEecCcccEEEEeecCCCCeEEEecCCCcEEE
Q 004745          589 VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR----LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKI  664 (732)
Q Consensus       589 ~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~----~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~v  664 (732)
                      .+|.-.++.+.    |||||+||+|.|+|+++.+|..+...    ..+.++.|+..|+++.|+|+++++||+|.|.+|+|
T Consensus       569 ~~HsLTVT~l~----FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV  644 (764)
T KOG1063|consen  569 EGHSLTVTRLA----FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKV  644 (764)
T ss_pred             cccceEEEEEE----ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEE
Confidence            99999988777    79999999999999999999976432    34568899999999999999999999999999999


Q ss_pred             EcCCCC--CCccc--cCCCCCCCchhHHHHHHHH
Q 004745          665 WTPSAS--VPSIV--SGGAAGPDTADVLEAMESN  694 (732)
Q Consensus       665 W~~~~~--~~~~~--~~gh~~~~~~~~~~~~~~~  694 (732)
                      |.....  +.+..  ..-++.++++.....+..+
T Consensus       645 W~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~  678 (764)
T KOG1063|consen  645 WEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHN  678 (764)
T ss_pred             EeccCchhhhhhhhchhccCCceeeEEeeccccc
Confidence            999887  44432  2235667665444444344

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.6e-34  Score=303.02  Aligned_cols=210  Identities=26%  Similarity=0.424  Sum_probs=180.6

Q ss_pred             cEeeecc-CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745           12 ERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus        12 ~~~l~~h-~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      ...+.+| ...|.++.|+++|++|++++.|+.+++|+..+.+  ....+ .+|...|.+++|+|+  +.++++++.|++|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d--~~~l~s~s~D~ti  227 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPD--GSYLLSGSDDKTL  227 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCC--CcEEEEecCCceE
Confidence            5556555 8999999999999999999999999999998777  66666 799999999999999  5899999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      +|||+... +        ..++++++|...|++++|+|++ +++++|+.|++|++||+++++.                 
T Consensus       228 riwd~~~~-~--------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~-----------------  280 (456)
T KOG0266|consen  228 RIWDLKDD-G--------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC-----------------  280 (456)
T ss_pred             EEeeccCC-C--------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE-----------------
Confidence            99999432 2        3478999999999999999977 9999999999999999998762                 


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC--CcccccCCCCCCccccccccccccCCC
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                              +.....|...|++++|+++ +++|++++.|+.|+|||+.++..  +..+                    .++
T Consensus       281 --------~~~l~~hs~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~--------------------~~~  331 (456)
T KOG0266|consen  281 --------VRKLKGHSDGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSKLCLKLL--------------------SGA  331 (456)
T ss_pred             --------EEeeeccCCceEEEEECCC-CCEEEEcCCCccEEEEECCCCceeeeecc--------------------cCC
Confidence                    3344567789999999999 88999999999999999998862  2222                    223


Q ss_pred             ccc-cEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          247 SSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       247 ~~~-~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      ... +++++.|+|++++|++++.|+.+++||+..+
T Consensus       332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence            332 5999999999999999999999999999873

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.5e-35  Score=273.51  Aligned_cols=194  Identities=17%  Similarity=0.312  Sum_probs=166.7

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS   97 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~   97 (732)
                      ..++|+|+.+.  ...+++|..|++|+|||..+-.+++.+ .||++.|.|+.|..    ..|++|+.|.+|+|||+.++ 
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqyd~----rviisGSSDsTvrvWDv~tg-  267 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQYDE----RVIVSGSSDSTVRVWDVNTG-  267 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeeccc----eEEEecCCCceEEEEeccCC-
Confidence            45789999985  567999999999999999999999888 89999999999975    58999999999999999984 


Q ss_pred             CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004745           98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  177 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (732)
                               +++.++.+|...|..+.|+.   .++++++.|.+|.+||+..+..+                      ...
T Consensus       268 ---------e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i----------------------t~r  313 (499)
T KOG0281|consen  268 ---------EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI----------------------TLR  313 (499)
T ss_pred             ---------chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH----------------------HHH
Confidence                     45899999999999999964   68999999999999999876521                      123


Q ss_pred             cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004745          178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  257 (732)
Q Consensus       178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  257 (732)
                      ....+|...|+.+.|+   .+++++++.|.+|++|++.+.+-+..+                    .||..+ |.|+.+ 
T Consensus       314 rVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl--------------------~gHkRG-IAClQY-  368 (499)
T KOG0281|consen  314 RVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTL--------------------NGHKRG-IACLQY-  368 (499)
T ss_pred             HHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhh--------------------hccccc-ceehhc-
Confidence            3456788899999998   459999999999999999998655444                    777664 877776 


Q ss_pred             CCCCEEEEEecCCeEEEEECCC
Q 004745          258 PNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       258 p~g~~l~~~~~dg~v~iwd~~~  279 (732)
                       .++++++|+.|.+|++||+..
T Consensus       369 -r~rlvVSGSSDntIRlwdi~~  389 (499)
T KOG0281|consen  369 -RDRLVVSGSSDNTIRLWDIEC  389 (499)
T ss_pred             -cCeEEEecCCCceEEEEeccc
Confidence             689999999999999999877

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.3e-34  Score=268.50  Aligned_cols=213  Identities=19%  Similarity=0.259  Sum_probs=183.3

Q ss_pred             hhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745            5 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus         5 ~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      |-...++.+.+.||.+.|.|+++.|-.++++||+.|++|+|||+.+++...++ .+|...|..+++|+..  .|+++++.
T Consensus       137 WHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~rH--pYlFs~ge  213 (460)
T KOG0285|consen  137 WHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKRH--PYLFSAGE  213 (460)
T ss_pred             ccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecccC--ceEEEecC
Confidence            33456778899999999999999999999999999999999999999999999 8999999999999986  89999999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      |+.|+.||++..          +.++.+.||-..|.+++.+|.. +.|++|+.|.++++||+++..              
T Consensus       214 dk~VKCwDLe~n----------kvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~--------------  268 (460)
T KOG0285|consen  214 DKQVKCWDLEYN----------KVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRA--------------  268 (460)
T ss_pred             CCeeEEEechhh----------hhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccc--------------
Confidence            999999999963          3478899999999999999955 899999999999999999976              


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                                 .+....+|..+|.++.+.|.+ -.+++|+.|++|++||++.++.+..+                    .
T Consensus       269 -----------~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~~tl--------------------t  316 (460)
T KOG0285|consen  269 -----------SVHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTMITL--------------------T  316 (460)
T ss_pred             -----------eEEEecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCceeEee--------------------e
Confidence                       345567888899999999984 48999999999999999988754433                    2


Q ss_pred             CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .|.. .+.+++.+|....+++++.| .|+-|++..
T Consensus       317 ~hkk-svral~lhP~e~~fASas~d-nik~w~~p~  349 (460)
T KOG0285|consen  317 HHKK-SVRALCLHPKENLFASASPD-NIKQWKLPE  349 (460)
T ss_pred             cccc-eeeEEecCCchhhhhccCCc-cceeccCCc
Confidence            2333 59999999998877877776 556665544

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.3e-33  Score=247.03  Aligned_cols=217  Identities=16%  Similarity=0.249  Sum_probs=176.3

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      .++++.++++...+.|+.+...||++.||+++. ..||+||+.++.  .+.++ .+|...|+++.|.-+  |+.+++|++
T Consensus        28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~-e~h~kNVtaVgF~~d--grWMyTgse  103 (311)
T KOG0315|consen   28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATF-EGHTKNVTAVGFQCD--GRWMYTGSE  103 (311)
T ss_pred             hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEE-eccCCceEEEEEeec--CeEEEecCC
Confidence            367788999888899999999999999999876 679999998765  57778 799999999999999  699999999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      ||+++|||++...           .+....|..+|+++..+|+. ..|++|..+|.|++||+.......           
T Consensus       104 Dgt~kIWdlR~~~-----------~qR~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~-----------  160 (311)
T KOG0315|consen  104 DGTVKIWDLRSLS-----------CQRNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTH-----------  160 (311)
T ss_pred             CceEEEEeccCcc-----------cchhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCcccc-----------
Confidence            9999999999743           24444578999999999954 677799999999999998764220           


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                                   ...+.....|.++...|+ |.+++.+...|.+++|++-..+....+             .|.+.. +
T Consensus       161 -------------~liPe~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~~s~l-------------~P~~k~-~  212 (311)
T KOG0315|consen  161 -------------ELIPEDDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQTASEL-------------EPVHKF-Q  212 (311)
T ss_pred             -------------ccCCCCCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCccccc-------------eEhhhe-e
Confidence                         111223358999999999 889999999999999999875433222             111111 4


Q ss_pred             CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .|.+ .+..+.+||++++|++++.|.+++||+..+
T Consensus       213 ah~~-~il~C~lSPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  213 AHNG-HILRCLLSPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             cccc-eEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence            4555 599999999999999999999999998876

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=9.3e-33  Score=247.48  Aligned_cols=220  Identities=20%  Similarity=0.291  Sum_probs=183.2

Q ss_pred             hccccEeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCC---CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745            8 RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~---~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      ++..++.+.+|++.|..++|+|- |..|||++.|+.||||+...   -.+...+..+|+..|..++|+|.  |++|++++
T Consensus         3 ~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aS   80 (312)
T KOG0645|consen    3 RLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH--GRYLASAS   80 (312)
T ss_pred             cceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC--CcEEEEee
Confidence            45678899999999999999997 89999999999999999884   45666666789999999999999  59999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      .|.++.||.-....        ++++..+.||...|.+++|+++ +++||+|+.|+.|-||.+.....            
T Consensus        81 FD~t~~Iw~k~~~e--------fecv~~lEGHEnEVK~Vaws~s-G~~LATCSRDKSVWiWe~deddE------------  139 (312)
T KOG0645|consen   81 FDATVVIWKKEDGE--------FECVATLEGHENEVKCVAWSAS-GNYLATCSRDKSVWIWEIDEDDE------------  139 (312)
T ss_pred             ccceEEEeecCCCc--------eeEEeeeeccccceeEEEEcCC-CCEEEEeeCCCeEEEEEecCCCc------------
Confidence            99999999766432        4678999999999999999995 59999999999999999885542            


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                                ......+..|...|..+.|+|. ..+|++++.|++|++|+-.....-          .|.+.+       
T Consensus       140 ----------fec~aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW----------~c~~tl-------  191 (312)
T KOG0645|consen  140 ----------FECIAVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDW----------ECVQTL-------  191 (312)
T ss_pred             ----------EEEEeeeccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCCe----------eEEEEe-------
Confidence                      1123334567778999999998 679999999999999987632211          233333       


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .+|.. .|.+++|+|.|..|++++.|++|+||...+
T Consensus       192 ~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~  226 (312)
T KOG0645|consen  192 DGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT  226 (312)
T ss_pred             cCccc-eEEEEEecCCCceEEEecCCcceEeeeecc
Confidence            66766 699999999999999999999999997554

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-33  Score=254.41  Aligned_cols=256  Identities=18%  Similarity=0.184  Sum_probs=208.3

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      ..+.+++.|+||...|..+..++||++.++++.|+++|+||+.+++..++| .+|...|.+++|+|+.  ..|+||+.|.
T Consensus        51 ~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~dn--~qivSGSrDk  127 (315)
T KOG0279|consen   51 KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTDN--RQIVSGSRDK  127 (315)
T ss_pred             ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCCC--ceeecCCCcc
Confidence            345678999999999999999999999999999999999999999999999 7999999999999994  8999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccc--cCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCH--TRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      +|++|++..           .+..++..+  .+.|.++.|+|.. ..+|++++.|++|++||+++.+             
T Consensus       128 Tiklwnt~g-----------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-------------  183 (315)
T KOG0279|consen  128 TIKLWNTLG-----------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-------------  183 (315)
T ss_pred             eeeeeeecc-----------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-------------
Confidence            999999984           223444433  7899999999964 5789999999999999998876             


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                                  ....+.+|...++.+.++|| |.++++|+.||.+.+||++.++.+..+                    
T Consensus       184 ------------l~~~~~gh~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~lysl--------------------  230 (315)
T KOG0279|consen  184 ------------LRTTFIGHSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNLYSL--------------------  230 (315)
T ss_pred             ------------hhhccccccccEEEEEECCC-CCEEecCCCCceEEEEEccCCceeEec--------------------
Confidence                        23455678889999999999 889999999999999999988765443                    


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccccc
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRG  323 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  323 (732)
                       .+.. .|.+++|+|+.-.|+.+. +..|+|||+.+......+....       ..|..+.-.....++++++||+.+. 
T Consensus       231 -~a~~-~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~-------~g~s~~~~~~~clslaws~dG~tLf-  299 (315)
T KOG0279|consen  231 -EAFD-IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDG-------IGPSSKAGDPICLSLAWSADGQTLF-  299 (315)
T ss_pred             -cCCC-eEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccc-------cccccccCCcEEEEEEEcCCCcEEE-
Confidence             1222 599999999986666555 4469999999865433221110       0112333344566789999999998 


Q ss_pred             ccccCcchhhHH
Q 004745          324 EVATGLGKCRML  335 (732)
Q Consensus       324 ~~~~~~d~~~~l  335 (732)
                        .+-.|+.+++
T Consensus       300 --~g~td~~irv  309 (315)
T KOG0279|consen  300 --AGYTDNVIRV  309 (315)
T ss_pred             --eeecCCcEEE
Confidence              8888888888

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.3e-32  Score=274.64  Aligned_cols=207  Identities=27%  Similarity=0.417  Sum_probs=173.5

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF   91 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw   91 (732)
                      ++++++|.++|++++|+|++++|++++.||.|++|++.+++....+ ..|...+..+.|+|+  +++|++++.|+.|++|
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~   78 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASAD--GTYLASGSSDKTIRLW   78 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECCC--CCEEEEEcCCCeEEEE
Confidence            4567899999999999999999999999999999999988877777 789999999999998  4799999999999999


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      ++...          ..+..+..|...+.++.|+|+ +.++++++.|+.|++||+.+.+..                   
T Consensus        79 ~~~~~----------~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~-------------------  128 (289)
T cd00200          79 DLETG----------ECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCL-------------------  128 (289)
T ss_pred             EcCcc----------cceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEE-------------------
Confidence            99863          225677788889999999995 578888888999999999865421                   


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  251 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (732)
                            .....+...+.++.|+|+ +.++++++.|+.|++||+++.+.+..+                    ..+.. .+
T Consensus       129 ------~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~--------------------~~~~~-~i  180 (289)
T cd00200         129 ------TTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATL--------------------TGHTG-EV  180 (289)
T ss_pred             ------EEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccccceeE--------------------ecCcc-cc
Confidence                  111235558999999998 778888888999999999876554433                    22333 59


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          252 THVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       252 ~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .++.|+|+++.+++++.++.|++||+.+
T Consensus       181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         181 NSVAFSPDGEKLLSSSSDGTIKLWDLST  208 (289)
T ss_pred             ceEEECCCcCEEEEecCCCcEEEEECCC
Confidence            9999999999999999999999999876

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.8e-33  Score=250.50  Aligned_cols=286  Identities=16%  Similarity=0.206  Sum_probs=245.0

Q ss_pred             EEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEE
Q 004745           55 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  134 (732)
Q Consensus        55 ~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  134 (732)
                      +.+ ++|.+.|.++.|++++  ++|++++.||.+.|||.-+...          .+.+.--...|...+|+| .++++|.
T Consensus        49 r~L-kGH~~Ki~~~~ws~Ds--r~ivSaSqDGklIvWDs~TtnK----------~haipl~s~WVMtCA~sP-Sg~~VAc  114 (343)
T KOG0286|consen   49 RTL-KGHLNKIYAMDWSTDS--RRIVSASQDGKLIVWDSFTTNK----------VHAIPLPSSWVMTCAYSP-SGNFVAC  114 (343)
T ss_pred             EEe-cccccceeeeEecCCc--CeEEeeccCCeEEEEEcccccc----------eeEEecCceeEEEEEECC-CCCeEEe
Confidence            445 8999999999999995  9999999999999999887432          455555678899999999 5599999


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEEC
Q 004745          135 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  214 (732)
Q Consensus       135 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~  214 (732)
                      |+-|+...||++.+.+.-                   +..+......+|...+.++.|-+|  ..|+|++.|.++.+||+
T Consensus       115 GGLdN~Csiy~ls~~d~~-------------------g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDi  173 (343)
T KOG0286|consen  115 GGLDNKCSIYPLSTRDAE-------------------GNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDI  173 (343)
T ss_pred             cCcCceeEEEeccccccc-------------------ccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEc
Confidence            999999999999866311                   122334456789999999999986  48999999999999999


Q ss_pred             CCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEECCCCCCcceeeecCCCC
Q 004745          215 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS  293 (732)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  293 (732)
                      .+++.+..+                    .||.+ .|.++.++| +++.+++|+.|+..++||++.+             
T Consensus       174 e~g~~~~~f--------------------~GH~g-DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-------------  219 (343)
T KOG0286|consen  174 ETGQQTQVF--------------------HGHTG-DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-------------  219 (343)
T ss_pred             ccceEEEEe--------------------cCCcc-cEEEEecCCCCCCeEEecccccceeeeeccCc-------------
Confidence            999877666                    78888 499999999 9999999999999999998872             


Q ss_pred             ceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccch
Q 004745          294 KIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRH  373 (732)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  373 (732)
                                                                                                      
T Consensus       220 --------------------------------------------------------------------------------  219 (343)
T KOG0286|consen  220 --------------------------------------------------------------------------------  219 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHH
Q 004745          374 ECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI  453 (732)
Q Consensus       374 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  453 (732)
                                                                                                      
T Consensus       220 --------------------------------------------------------------------------------  219 (343)
T KOG0286|consen  220 --------------------------------------------------------------------------------  219 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccc
Q 004745          454 KKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVE  533 (732)
Q Consensus       454 ~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~  533 (732)
                                                                                                      
T Consensus       220 --------------------------------------------------------------------------------  219 (343)
T KOG0286|consen  220 --------------------------------------------------------------------------------  219 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEE
Q 004745          534 ANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIAS  613 (732)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~las  613 (732)
                                                                       ..+++|.||...+..|+    |-|+|.-+||
T Consensus       220 -------------------------------------------------~c~qtF~ghesDINsv~----ffP~G~afat  246 (343)
T KOG0286|consen  220 -------------------------------------------------QCVQTFEGHESDINSVR----FFPSGDAFAT  246 (343)
T ss_pred             -------------------------------------------------ceeEeecccccccceEE----EccCCCeeee
Confidence                                                             15577888988855555    5899999999


Q ss_pred             ecCCCcEEEEEcCcccEEEEEecC--cccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCC-----chh
Q 004745          614 GSDDGRWFIWEKQTGRLIKMLLGD--EAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPD-----TAD  686 (732)
Q Consensus       614 gs~Dg~i~iWd~~tg~~~~~l~gH--~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~-----~~~  686 (732)
                      ||.|+++++||++..+.++.+..-  ...|++|+||-.|++|+.|..|.++.|||.-.++.+..+.||..++     ++|
T Consensus       247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~D  326 (343)
T KOG0286|consen  247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPD  326 (343)
T ss_pred             cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCC
Confidence            999999999999999999999853  4689999999999999999999999999999999999999998887     477


Q ss_pred             HHHHHHHHHHHhhhcc
Q 004745          687 VLEAMESNQRKLSRNR  702 (732)
Q Consensus       687 ~~~~~~~~~~~~~~~~  702 (732)
                      ...+.+.+=+...|+|
T Consensus       327 G~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  327 GMAVATGSWDSTLRIW  342 (343)
T ss_pred             CcEEEecchhHheeec
Confidence            7778888877777777

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.8e-32  Score=256.82  Aligned_cols=240  Identities=18%  Similarity=0.234  Sum_probs=178.0

Q ss_pred             hhhhccccEeee--ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecC-CCCCEEEE
Q 004745            5 LVRRLSQERELE--GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVS   81 (732)
Q Consensus         5 ~~~~~~~~~~l~--~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~-~~g~~l~s   81 (732)
                      |++.+.....+.  -|.+.|.++...  +++++||++||+++||| ..|+....+ .+|.++|.+++|.-. .....|++
T Consensus        89 Yv~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvs  164 (423)
T KOG0313|consen   89 YVEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVS  164 (423)
T ss_pred             EEEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEE-ecCCcceeeeEEEecCCccceEEE
Confidence            344444333333  388889988877  78999999999999999 557888888 799999998888643 21235999


Q ss_pred             EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004745           82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      ++.|.++++|.++.+....      +.+..-+||...|.++...+++ ..+++|+.|.+|.+|+..+...-..-......
T Consensus       165 as~Dqtl~Lw~~~~~~~~~------~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r  237 (423)
T KOG0313|consen  165 ASMDQTLRLWKWNVGENKV------KALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRR  237 (423)
T ss_pred             ecCCceEEEEEecCchhhh------hHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhh
Confidence            9999999999988654322      3445556999999999999955 88999999999999994332211000000011


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                      ..........+...++....+|..+|.++.|++.  ..+++++.|.+|+.||+.++..+.++.                 
T Consensus       238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~-----------------  298 (423)
T KOG0313|consen  238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLT-----------------  298 (423)
T ss_pred             hhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeee-----------------
Confidence            1111122233344566777899999999999984  589999999999999999987665441                 


Q ss_pred             ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                         +  +..++++..+|..++|++|+.|..+++||.++
T Consensus       299 ---~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~  331 (423)
T KOG0313|consen  299 ---T--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRT  331 (423)
T ss_pred             ---c--CcceeEeecccccceeeecCCCCceeecCCCC
Confidence               1  12589999999999999999999999999887

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.3e-31  Score=304.48  Aligned_cols=204  Identities=19%  Similarity=0.278  Sum_probs=162.8

Q ss_pred             eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC----e----eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745           15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----K----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~----~----~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      +.+|...|++++|+|+|++||+|+.|++|+|||+...    .    ....+  .+...|.+++|+|.. +.+|++++.||
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~-~~~las~~~Dg  555 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYI-KSQVASSNFEG  555 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCC-CCEEEEEeCCC
Confidence            4458999999999999999999999999999997532    1    12223  345679999999864 58999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      +|++||+.+.          ..+..+.+|...|++++|+|.++.+|++|+.|+.|++||++++...              
T Consensus       556 ~v~lWd~~~~----------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~--------------  611 (793)
T PLN00181        556 VVQVWDVARS----------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI--------------  611 (793)
T ss_pred             eEEEEECCCC----------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE--------------
Confidence            9999999863          2367788999999999999866789999999999999999876521              


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHG  245 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (732)
                      .        .+   . +...+.++.|.+.++.+|++|+.||.|++||+++.+ ++..+                    .+
T Consensus       612 ~--------~~---~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~--------------------~~  659 (793)
T PLN00181        612 G--------TI---K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM--------------------IG  659 (793)
T ss_pred             E--------EE---e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe--------------------cC
Confidence            0        00   0 113688999976558999999999999999998653 12111                    44


Q ss_pred             CccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      |.. .|+++.|. ++.+|++++.|++|++||+..
T Consensus       660 h~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        660 HSK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             CCC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence            555 59999997 678999999999999999875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-32  Score=256.33  Aligned_cols=186  Identities=16%  Similarity=0.170  Sum_probs=151.3

Q ss_pred             eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004745           53 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  132 (732)
Q Consensus        53 ~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  132 (732)
                      ....+ .+|..+|+.+-|+|+.  ..+++++.|++|++||..+++          +...+++|.+.+.+|+|+.. +.++
T Consensus       100 l~~~l-~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~----------~e~~LrGHt~sv~di~~~a~-Gk~l  165 (406)
T KOG0295|consen  100 LVQKL-AGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGE----------LERSLRGHTDSVFDISFDAS-GKYL  165 (406)
T ss_pred             chhhh-hccccceeeeeeccCc--eEEEEecCCceEEEEEccchh----------hhhhhhccccceeEEEEecC-ccEE
Confidence            33444 5899999999999995  788889999999999999853          36889999999999999984 4999


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004745          133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  212 (732)
Q Consensus       133 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw  212 (732)
                      ++++.|-.+++||..+...                        .+....+|...|.++.|-|. +.++++++.|.+|+.|
T Consensus       166 ~tcSsDl~~~LWd~~~~~~------------------------c~ks~~gh~h~vS~V~f~P~-gd~ilS~srD~tik~W  220 (406)
T KOG0295|consen  166 ATCSSDLSAKLWDFDTFFR------------------------CIKSLIGHEHGVSSVFFLPL-GDHILSCSRDNTIKAW  220 (406)
T ss_pred             EecCCccchhheeHHHHHH------------------------HHHHhcCcccceeeEEEEec-CCeeeecccccceeEE
Confidence            9999999999999876421                        23444567778999999999 7899999999999999


Q ss_pred             ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCC
Q 004745          213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA  292 (732)
Q Consensus       213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  292 (732)
                      ++.++..+.++                    .+|.. +|..++.+.||.++++++.|.+|++|-+.+......+..+..+
T Consensus       221 e~~tg~cv~t~--------------------~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~  279 (406)
T KOG0295|consen  221 ECDTGYCVKTF--------------------PGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP  279 (406)
T ss_pred             ecccceeEEec--------------------cCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence            99998655444                    66766 7999999999999999999999999999886544444444444


Q ss_pred             Cceeee
Q 004745          293 SKIMSF  298 (732)
Q Consensus       293 ~~~~~~  298 (732)
                      +..++|
T Consensus       280 vEci~w  285 (406)
T KOG0295|consen  280 VECIAW  285 (406)
T ss_pred             eEEEEe
Confidence            443333

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.8e-34  Score=262.62  Aligned_cols=154  Identities=18%  Similarity=0.278  Sum_probs=126.2

Q ss_pred             CCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc
Q 004745           61 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT  140 (732)
Q Consensus        61 h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  140 (732)
                      ....|+|+.+..    ..+++|..|++|+|||....          .++..+.||++.|.|+.|.   .+.|++|+.|.+
T Consensus       196 ~skgVYClQYDD----~kiVSGlrDnTikiWD~n~~----------~c~~~L~GHtGSVLCLqyd---~rviisGSSDsT  258 (499)
T KOG0281|consen  196 NSKGVYCLQYDD----EKIVSGLRDNTIKIWDKNSL----------ECLKILTGHTGSVLCLQYD---ERVIVSGSSDST  258 (499)
T ss_pred             cCCceEEEEecc----hhhhcccccCceEEeccccH----------HHHHhhhcCCCcEEeeecc---ceEEEecCCCce
Confidence            346799999875    47999999999999999863          4578899999999999994   479999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCC
Q 004745          141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  220 (732)
Q Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~  220 (732)
                      |++||.+++++                         +.....|...|..+.|+.   .++++++.|.++++||+.....+
T Consensus       259 vrvWDv~tge~-------------------------l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i  310 (499)
T KOG0281|consen  259 VRVWDVNTGEP-------------------------LNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI  310 (499)
T ss_pred             EEEEeccCCch-------------------------hhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH
Confidence            99999999984                         344456777899999985   39999999999999999875432


Q ss_pred             cccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          221 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .          |.+.+       .||.. .|+.+.|+  .+++++++.|.+|++|++.+
T Consensus       311 t----------~rrVL-------vGHrA-aVNvVdfd--~kyIVsASgDRTikvW~~st  349 (499)
T KOG0281|consen  311 T----------LRRVL-------VGHRA-AVNVVDFD--DKYIVSASGDRTIKVWSTST  349 (499)
T ss_pred             H----------HHHHH-------hhhhh-heeeeccc--cceEEEecCCceEEEEeccc
Confidence            1          11222       66776 59999985  46999999999999998877

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.7e-32  Score=260.77  Aligned_cols=306  Identities=19%  Similarity=0.192  Sum_probs=235.5

Q ss_pred             CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCC-CCce---eeccccCceeEEEEecCCCcEEEEE
Q 004745           60 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI-TPSA---LYQCHTRRVKKLAVEVGNPHVVWSA  135 (732)
Q Consensus        60 ~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~---~~~~h~~~v~~l~~~p~~~~~l~s~  135 (732)
                      .|+.+|.+.+|+|.. ...+++++.|-+.++|++......+...... .++.   .-...+..|++++|+.+ +.+||+|
T Consensus       176 ~~~~~V~~~~WnP~~-~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~-G~~LatG  253 (524)
T KOG0273|consen  176 RHESEVFICAWNPLR-DGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND-GTLLATG  253 (524)
T ss_pred             cCCCceEEEecCchh-hhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC-CCeEEEe
Confidence            499999999999985 3489999999999999998422211100000 0000   00112457999999984 5999999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004745          136 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  215 (732)
Q Consensus       136 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~  215 (732)
                      +.||.+++|+.....                          +.....|.++|.++.|+.. |.+|++++-|+++.+||..
T Consensus       254 ~~~G~~riw~~~G~l--------------------------~~tl~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~  306 (524)
T KOG0273|consen  254 SEDGEARIWNKDGNL--------------------------ISTLGQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAH  306 (524)
T ss_pred             ecCcEEEEEecCchh--------------------------hhhhhccCCceEEEEEcCC-CCEEEeccCCccEEEEecc
Confidence            999999999986543                          3344568889999999998 8999999999999999998


Q ss_pred             CCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCce
Q 004745          216 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKI  295 (732)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  295 (732)
                      ++.....+                    .-|.. +-..+.|-.+. .+++.+.||.|+++.+......            
T Consensus       307 ~g~~~q~f--------------------~~~s~-~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~------------  352 (524)
T KOG0273|consen  307 TGTVKQQF--------------------EFHSA-PALDVDWQSND-EFATSSTDGCIHVCKVGEDRPV------------  352 (524)
T ss_pred             CceEEEee--------------------eeccC-CccceEEecCc-eEeecCCCceEEEEEecCCCcc------------
Confidence            77544433                    11222 23557777655 4899999999999977652111            


Q ss_pred             eeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhh
Q 004745          296 MSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHEC  375 (732)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  375 (732)
                                                                                                      
T Consensus       353 --------------------------------------------------------------------------------  352 (524)
T KOG0273|consen  353 --------------------------------------------------------------------------------  352 (524)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 004745          376 LCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKK  455 (732)
Q Consensus       376 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  455 (732)
                                                                                                      
T Consensus       353 --------------------------------------------------------------------------------  352 (524)
T KOG0273|consen  353 --------------------------------------------------------------------------------  352 (524)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccc
Q 004745          456 HIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEAN  535 (732)
Q Consensus       456 ~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  535 (732)
                                                                                                      
T Consensus       353 --------------------------------------------------------------------------------  352 (524)
T KOG0273|consen  353 --------------------------------------------------------------------------------  352 (524)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCC-------
Q 004745          536 FLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRG-------  608 (732)
Q Consensus       536 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg-------  608 (732)
                             .++.+|+..|.++.|.|.|.+|++++.|.+.++|.... ....+.|.+|...++.|.    +||+|       
T Consensus       353 -------~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~----wsp~g~v~~n~~  420 (524)
T KOG0273|consen  353 -------KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIK----WSPTGPVTSNPN  420 (524)
T ss_pred             -------eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEe----ecCCCCccCCCc
Confidence                   23344666666777777777777777677777776555 568889999998877777    67755       


Q ss_pred             --CEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCC
Q 004745          609 --DYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAA  680 (732)
Q Consensus       609 --~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~  680 (732)
                        -.|++++.|++|++||+..|.++++|..|+.+|++|+|||+|+|||||+.||.|.+|++++++...++.|-.
T Consensus       421 ~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~  494 (524)
T KOG0273|consen  421 MNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG  494 (524)
T ss_pred             CCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence              589999999999999999999999999999999999999999999999999999999999999998887643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=3.4e-32  Score=240.65  Aligned_cols=205  Identities=18%  Similarity=0.248  Sum_probs=173.5

Q ss_pred             cEeeeccCCceeEEEEcC---CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745           12 ERELEGHQGCVNAISWNS---KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~---dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      ..+..||+.+|-.++|||   +|-+|++++.|+.-.+-+-++|..+.+| .+|+++|.......+.  .+.++++.|-+-
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~na--~~aasaaadfta   83 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKNA--TRAASAAADFTA   83 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCchh--hhhhhhcccchh
Confidence            346679999999999995   8999999999999999999999999999 7999999999998884  788899999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      +|||.-++..          ++.+. |..-|..++|+.+ .++|++|+.+..+||||++..+.+                
T Consensus        84 kvw~a~tgde----------lhsf~-hkhivk~~af~~d-s~~lltgg~ekllrvfdln~p~Ap----------------  135 (334)
T KOG0278|consen   84 KVWDAVTGDE----------LHSFE-HKHIVKAVAFSQD-SNYLLTGGQEKLLRVFDLNRPKAP----------------  135 (334)
T ss_pred             hhhhhhhhhh----------hhhhh-hhheeeeEEeccc-chhhhccchHHHhhhhhccCCCCC----------------
Confidence            9999987542          56665 8899999999995 488999999999999999988743                


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                              .....+|...|..+-|... .+.|++.+.|++||+||.+++..++++..                      .
T Consensus       136 --------p~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~----------------------~  184 (334)
T KOG0278|consen  136 --------PKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEF----------------------N  184 (334)
T ss_pred             --------chhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEec----------------------C
Confidence                    2334567778999999887 67888889999999999999987766532                      1


Q ss_pred             ccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .+|+++.++++|++|.++ ..+.|.+||..+
T Consensus       185 s~VtSlEvs~dG~ilTia-~gssV~Fwdaks  214 (334)
T KOG0278|consen  185 SPVTSLEVSQDGRILTIA-YGSSVKFWDAKS  214 (334)
T ss_pred             CCCcceeeccCCCEEEEe-cCceeEEecccc
Confidence            259999999999966655 556899999887

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-30  Score=236.84  Aligned_cols=215  Identities=22%  Similarity=0.364  Sum_probs=172.6

Q ss_pred             hhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-
Q 004745            6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-   84 (732)
Q Consensus         6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-   84 (732)
                      ++++++.+.++.-...|+++.|+++|.+|++++.|.+++|||..++++++.+ ..++-.|..++|....  ..++.++. 
T Consensus         1 l~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~~--~~~i~sStk   77 (311)
T KOG1446|consen    1 LRSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHHS--NTVIHSSTK   77 (311)
T ss_pred             CcccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecCC--ceEEEccCC
Confidence            3577888888888999999999999999999999999999999999999999 6777788999998774  56666665 


Q ss_pred             -CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           85 -DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        85 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                       |.+|+.-++.+.          +.++.+.||...|++|..+|-+ ..+++++.|++|++||++..+.....        
T Consensus        78 ~d~tIryLsl~dN----------kylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l--------  138 (311)
T KOG1446|consen   78 EDDTIRYLSLHDN----------KYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLL--------  138 (311)
T ss_pred             CCCceEEEEeecC----------ceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEE--------
Confidence             889999999864          4589999999999999999955 89999999999999999977643111        


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC--CCcccccCCCCCCcccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP--PLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                          .               ...-..++|+|. |-++|++.....|++||+++..  +..++             ...  
T Consensus       139 ----~---------------~~~~pi~AfDp~-GLifA~~~~~~~IkLyD~Rs~dkgPF~tf-------------~i~--  183 (311)
T KOG1446|consen  139 ----N---------------LSGRPIAAFDPE-GLIFALANGSELIKLYDLRSFDKGPFTTF-------------SIT--  183 (311)
T ss_pred             ----e---------------cCCCcceeECCC-CcEEEEecCCCeEEEEEecccCCCCceeE-------------ccC--
Confidence                0               012235789998 7788888877799999999753  22221             111  


Q ss_pred             ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                        .+. ....+.+.|+|||++|+.++..+.+++.|.-+|
T Consensus       184 --~~~-~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G  219 (311)
T KOG1446|consen  184 --DND-EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG  219 (311)
T ss_pred             --CCC-ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence              011 124899999999999999999999999987663

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.9e-32  Score=277.71  Aligned_cols=210  Identities=22%  Similarity=0.340  Sum_probs=191.4

Q ss_pred             ccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004745           11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL   90 (732)
Q Consensus        11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v   90 (732)
                      ..++|.||.++|..+.|+|+.++|++++.|++||+|.+.+..++..+ ++|..+|.++.|+|.  |-+++|++.|++.++
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~--GyYFatas~D~tArL  519 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPR--GYYFATASHDQTARL  519 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCC--ceEEEecCCCceeee
Confidence            45679999999999999999999999999999999999999999999 799999999999999  699999999999999


Q ss_pred             EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004745           91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  170 (732)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  170 (732)
                      |.....          .|++.+.+|...|.|+.|+| +.+++++||.|.+||+||+.++..                   
T Consensus       520 Ws~d~~----------~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~-------------------  569 (707)
T KOG0263|consen  520 WSTDHN----------KPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS-------------------  569 (707)
T ss_pred             eecccC----------CchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcE-------------------
Confidence            998862          56899999999999999999 569999999999999999999872                   


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  250 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (732)
                            +....+|..+|.+++|+|+ |++|++|+.||.|.+||+.+++++..+                    .+|.+ .
T Consensus       570 ------VRiF~GH~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWDl~~~~~v~~l--------------------~~Ht~-t  621 (707)
T KOG0263|consen  570 ------VRIFTGHKGPVTALAFSPC-GRYLASGDEDGLIKIWDLANGSLVKQL--------------------KGHTG-T  621 (707)
T ss_pred             ------EEEecCCCCceEEEEEcCC-CceEeecccCCcEEEEEcCCCcchhhh--------------------hcccC-c
Confidence                  2223568889999999998 899999999999999999998877666                    67755 6


Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          251 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       251 i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      |.++.|+.+|..|++|+.|.+|++||+....
T Consensus       622 i~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  622 IYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             eeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            9999999999999999999999999998743

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=5.7e-31  Score=261.27  Aligned_cols=213  Identities=15%  Similarity=0.306  Sum_probs=187.6

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      +++..+.+..|++.|.++.|+|...+++++-.+|.|.|||.++...++.+ .-..-+|.+..|.+..  +.+++|+.|..
T Consensus         2 ~l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfiaRk--nWiv~GsDD~~   78 (794)
T KOG0276|consen    2 KLDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIARK--NWIVTGSDDMQ   78 (794)
T ss_pred             cchhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeeecc--ceEEEecCCce
Confidence            45566777889999999999999999999999999999999999999999 6778899999999984  89999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      |+||+..+.          +.++.+..|.+-|++|+.+|.. .+++|+|.|-.|++||.+..-.+               
T Consensus        79 IrVfnynt~----------ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~---------------  132 (794)
T KOG0276|consen   79 IRVFNYNTG----------EKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWAC---------------  132 (794)
T ss_pred             EEEEecccc----------eeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceee---------------
Confidence            999999985          3389999999999999999966 78889999999999999876433               


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                               .....+|...|.+++|+|.+.+.+++++-|++|+||.+.+..+..++                    .||.
T Consensus       133 ---------~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl--------------------~gHe  183 (794)
T KOG0276|consen  133 ---------EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL--------------------EGHE  183 (794)
T ss_pred             ---------eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee--------------------eccc
Confidence                     23345677799999999999999999999999999999877655554                    6787


Q ss_pred             cccEEEEEEcCCC--CEEEEEecCCeEEEEECCC
Q 004745          248 SLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       248 ~~~i~~l~~sp~g--~~l~~~~~dg~v~iwd~~~  279 (732)
                      .+ |+++.+-+.|  .+|++|+.|.+|+|||.++
T Consensus       184 kG-VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt  216 (794)
T KOG0276|consen  184 KG-VNCVDYYTGGDKPYLISGADDLTIKVWDYQT  216 (794)
T ss_pred             cC-cceEEeccCCCcceEEecCCCceEEEeecch
Confidence            74 9999999855  6999999999999999988

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.5e-30  Score=267.76  Aligned_cols=224  Identities=18%  Similarity=0.267  Sum_probs=177.6

Q ss_pred             eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004745           15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS   94 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~   94 (732)
                      ++--+..|..++|+|...+++++-..|.|++||.+-+.++.+| ..|+++|..+.|+|.  +.+++||+.|.+|+||+.+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~--qplFVSGGDDykIkVWnYk   81 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNYK   81 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCC--CCeEEecCCccEEEEEecc
Confidence            3445778999999999999999999999999999999999999 799999999999999  4899999999999999998


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                      +.          .++.++.||-+-|..+.|++.- ..|+++|.|.+|+||+..+++                        
T Consensus        82 ~r----------rclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~------------------------  126 (1202)
T KOG0292|consen   82 TR----------RCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRK------------------------  126 (1202)
T ss_pred             cc----------eehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCc------------------------
Confidence            63          4589999999999999999955 789999999999999999887                        


Q ss_pred             ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccccc----CCCCCCc-ccccc----ccccccCC
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK----RMSPPPC-VNYFC----PMHLSEHG  245 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~----~~~~~~~-~~~~~----~~~~~~~~  245 (732)
                       .+....+|...|.|..|+|. ..++++++-|.+|||||+...+....-+.    .+...+- ...|.    .....-.|
T Consensus       127 -~iavltGHnHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG  204 (1202)
T KOG0292|consen  127 -CIAVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG  204 (1202)
T ss_pred             -eEEEEecCceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence             34445678889999999998 67999999999999999976543322211    0000000 00000    00011145


Q ss_pred             CccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      |.. .|+-++|+|.-..+++|+.|..|++|.+..
T Consensus       205 HDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmne  237 (1202)
T KOG0292|consen  205 HDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNE  237 (1202)
T ss_pred             ccc-ccceEEecCCcceEEecCCcceeeEEEecc
Confidence            655 388888888888888888888888887665

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=260.19  Aligned_cols=416  Identities=17%  Similarity=0.176  Sum_probs=303.5

Q ss_pred             hhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      +++.+.+.+++++...|+++.=+|-=..+|.|..+|+|.|++++.++.+..|. ...+.|+.++|..|+ ...+++|+..
T Consensus       189 vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk-~d~g~VtslSFrtDG-~p~las~~~~  266 (910)
T KOG1539|consen  189 VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK-QDWGRVTSLSFRTDG-NPLLASGRSN  266 (910)
T ss_pred             eccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE-ccccceeEEEeccCC-CeeEEeccCC
Confidence            46788999999999999999999988899999999999999999999999993 235999999999996 3678888888


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      |.+.+||++.....         ......|.+.|....|.| +...+++++.|+.+++|=..++.-              
T Consensus       267 G~m~~wDLe~kkl~---------~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg--------------  322 (910)
T KOG1539|consen  267 GDMAFWDLEKKKLI---------NVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDG--------------  322 (910)
T ss_pred             ceEEEEEcCCCeee---------eeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCC--------------
Confidence            99999999964321         233447889999999999 668999999999999997766542              


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccccc----------------CCCC
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK----------------RMSP  229 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~----------------~~~~  229 (732)
                             ..+.+..-.+|..+..++.|...++..+.+++.|++++.+++.....-+.+..                ....
T Consensus       323 -------~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~  395 (910)
T KOG1539|consen  323 -------VPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL  395 (910)
T ss_pred             -------cchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence                   22344455678889999999866699999999999999998754321111110                0000


Q ss_pred             CCcc-------------------------cccc------cccccc---CCCccccEEEEEEcCCCCEEEEEecCCeEEEE
Q 004745          230 PPCV-------------------------NYFC------PMHLSE---HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM  275 (732)
Q Consensus       230 ~~~~-------------------------~~~~------~~~~~~---~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iw  275 (732)
                      |+..                         .++.      ..+...   ....+..+++++.++.|++.+.|+..|.|-+|
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f  475 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF  475 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence            0000                         0000      000000   00122358999999999999999999999999


Q ss_pred             ECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhH
Q 004745          276 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEA  355 (732)
Q Consensus       276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~  355 (732)
                      +++++-....+.             ....|..++..++.-.-                                      
T Consensus       476 NmQSGi~r~sf~-------------~~~ah~~~V~gla~D~~--------------------------------------  504 (910)
T KOG1539|consen  476 NMQSGIHRKSFG-------------DSPAHKGEVTGLAVDGT--------------------------------------  504 (910)
T ss_pred             EcccCeeecccc-------------cCccccCceeEEEecCC--------------------------------------
Confidence            999953211100             00001111111000000                                      


Q ss_pred             hHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHH
Q 004745          356 CNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIA  435 (732)
Q Consensus       356 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (732)
                                                                                                      
T Consensus       505 --------------------------------------------------------------------------------  504 (910)
T KOG1539|consen  505 --------------------------------------------------------------------------------  504 (910)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhh
Q 004745          436 AQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEE  515 (732)
Q Consensus       436 ~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~  515 (732)
                                        +                                                             
T Consensus       505 ------------------n-------------------------------------------------------------  505 (910)
T KOG1539|consen  505 ------------------N-------------------------------------------------------------  505 (910)
T ss_pred             ------------------C-------------------------------------------------------------
Confidence                              1                                                             


Q ss_pred             hhhcccCCCCCCCCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeecccc
Q 004745          516 VEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVG  595 (732)
Q Consensus       516 ~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~  595 (732)
                           +.+++++.++.++.|++..+....--.-...+..+..+.....+|.+..+....+++..+ .+..+.|.||.+.+
T Consensus       506 -----~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t-~kvvR~f~gh~nri  579 (910)
T KOG1539|consen  506 -----RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT-RKVVREFWGHGNRI  579 (910)
T ss_pred             -----ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchh-hhhhHHhhccccce
Confidence                 344555555566666665544443334456677888888889999997666777788877 78999999999997


Q ss_pred             ceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCC-CcEEEEcCCCCCCcc
Q 004745          596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGID-NTIKIWTPSASVPSI  674 (732)
Q Consensus       596 ~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D-~~i~vW~~~~~~~~~  674 (732)
                      +++.    |||||++|++++.|++|++||+.|+.++-.+.- ..+.+++.|||+|.+|||+..| .-|.+|.-++.....
T Consensus       580 td~~----FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~~v  654 (910)
T KOG1539|consen  580 TDMT----FSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFKSV  654 (910)
T ss_pred             eeeE----eCCCCcEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEEchhHheec
Confidence            7666    699999999999999999999999999998874 7889999999999999999999 569999877655443


Q ss_pred             c
Q 004745          675 V  675 (732)
Q Consensus       675 ~  675 (732)
                      .
T Consensus       655 s  655 (910)
T KOG1539|consen  655 S  655 (910)
T ss_pred             c
Confidence            3

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.9e-30  Score=227.78  Aligned_cols=203  Identities=17%  Similarity=0.252  Sum_probs=161.4

Q ss_pred             ceeEEEEcC--CCCE-EEEE-----eCCCcEEEEeCCCCeeEEEEc-cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004745           21 CVNAISWNS--KGSL-LISG-----SDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLF   91 (732)
Q Consensus        21 ~V~~l~~s~--dg~~-lasg-----~~dg~i~vWd~~~~~~~~~~~-~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw   91 (732)
                      .=+++.|||  ++++ +|++     ...|++.|-++...+-+..+. ..-.+.+..++|+++. .+.+++++.||++++|
T Consensus        10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~   88 (311)
T KOG0277|consen   10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENH-ENQVIAASGDGSLRLF   88 (311)
T ss_pred             ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCC-cceEEEEecCceEEEe
Confidence            345788998  3433 2232     236899999987555544441 1345789999999987 5889999999999999


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      |+..+.         .|++.++.|...|.++.|++.....+++++.|++|++|+...++                     
T Consensus        89 d~~~~s---------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~---------------------  138 (311)
T KOG0277|consen   89 DLTMPS---------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN---------------------  138 (311)
T ss_pred             ccCCCC---------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc---------------------
Confidence            976543         56899999999999999999888889999999999999988776                     


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  251 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (732)
                          .+.+..+|..-|+..+|+|..++++++++.|+++++||++.......+                    ..|.. .|
T Consensus       139 ----Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i--------------------~ah~~-Ei  193 (311)
T KOG0277|consen  139 ----SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI--------------------EAHNS-EI  193 (311)
T ss_pred             ----ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE--------------------Eeccc-ee
Confidence                344466788899999999999999999999999999999864322112                    33443 59


Q ss_pred             EEEEEcC-CCCEEEEEecCCeEEEEECCC
Q 004745          252 THVTFSP-NGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       252 ~~l~~sp-~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .++.|+. +...|++|+.|+.|++||+++
T Consensus       194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~  222 (311)
T KOG0277|consen  194 LCCDWSKYNHNVLATGGVDNLVRGWDIRN  222 (311)
T ss_pred             EeecccccCCcEEEecCCCceEEEEehhh
Confidence            9999998 667889999999999999988

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2.6e-30  Score=236.77  Aligned_cols=205  Identities=23%  Similarity=0.466  Sum_probs=172.4

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc-------cCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~-------~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      |.+.-+-|..|||||++|++|+.||.|-|||..+|+..+.+.       --+..+|.|+.|+.++  .++++|+.||.|+
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs--EMlAsGsqDGkIK  288 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS--EMLASGSQDGKIK  288 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH--HHhhccCcCCcEE
Confidence            456778899999999999999999999999999998655441       2478999999999996  8999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeec-cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      ||.++++.          |++.+. .|+..|+++.|+.++ ..+++++.|.++++.-+.+++                  
T Consensus       289 vWri~tG~----------ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK------------------  339 (508)
T KOG0275|consen  289 VWRIETGQ----------CLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGK------------------  339 (508)
T ss_pred             EEEEecch----------HHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccch------------------
Confidence            99999853          356665 899999999999966 667799999999999999887                  


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                             .+....+|...|+...|.++ |+.+++++.||+|++|+..+.+             |+.+|.+..      .+
T Consensus       340 -------~LKEfrGHsSyvn~a~ft~d-G~~iisaSsDgtvkvW~~Ktte-------------C~~Tfk~~~------~d  392 (508)
T KOG0275|consen  340 -------CLKEFRGHSSYVNEATFTDD-GHHIISASSDGTVKVWHGKTTE-------------CLSTFKPLG------TD  392 (508)
T ss_pred             -------hHHHhcCccccccceEEcCC-CCeEEEecCCccEEEecCcchh-------------hhhhccCCC------Cc
Confidence                   45666788999999999999 8999999999999999999874             455554332      23


Q ss_pred             ccEEEEEEcC-CCCEEEEEecCCeEEEEECCC
Q 004745          249 LHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       249 ~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .+|+++-.-| +...++++...++|+|.+++.
T Consensus       393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG  424 (508)
T KOG0275|consen  393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG  424 (508)
T ss_pred             ccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence            3688888877 456788888899999998876

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=2e-29  Score=235.32  Aligned_cols=168  Identities=17%  Similarity=0.266  Sum_probs=140.9

Q ss_pred             eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004745           53 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  132 (732)
Q Consensus        53 ~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  132 (732)
                      .+..| ..|+..|++++.+|+  .++++||+.|..-.+|++.++.          ....+.+|++.|+++.|+.+ +.+|
T Consensus        56 S~~tF-~~H~~svFavsl~P~--~~l~aTGGgDD~AflW~~~~ge----------~~~eltgHKDSVt~~~Fshd-gtlL  121 (399)
T KOG0296|consen   56 SLVTF-DKHTDSVFAVSLHPN--NNLVATGGGDDLAFLWDISTGE----------FAGELTGHKDSVTCCSFSHD-GTLL  121 (399)
T ss_pred             ceeeh-hhcCCceEEEEeCCC--CceEEecCCCceEEEEEccCCc----------ceeEecCCCCceEEEEEccC-ceEE
Confidence            45566 799999999999997  4899999999999999999753          36889999999999999995 4999


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004745          133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  212 (732)
Q Consensus       133 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw  212 (732)
                      |||..+|.|+||+..++...              +.           .......+.-+.|+|- +..|++|+.||.+.+|
T Consensus       122 ATGdmsG~v~v~~~stg~~~--------------~~-----------~~~e~~dieWl~WHp~-a~illAG~~DGsvWmw  175 (399)
T KOG0296|consen  122 ATGDMSGKVLVFKVSTGGEQ--------------WK-----------LDQEVEDIEWLKWHPR-AHILLAGSTDGSVWMW  175 (399)
T ss_pred             EecCCCccEEEEEcccCceE--------------EE-----------eecccCceEEEEeccc-ccEEEeecCCCcEEEE
Confidence            99999999999999988632              10           0012236778899997 8899999999999999


Q ss_pred             ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      .+.+....+.+                    .||.. ++++=.|.|+|+.++++..||+|++||.+++.
T Consensus       176 ~ip~~~~~kv~--------------------~Gh~~-~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~  223 (399)
T KOG0296|consen  176 QIPSQALCKVM--------------------SGHNS-PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ  223 (399)
T ss_pred             ECCCcceeeEe--------------------cCCCC-CcccccccCCCceEEEEecCceEEEEecCCCc
Confidence            99986443333                    66655 69999999999999999999999999999963

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=4.7e-30  Score=258.04  Aligned_cols=560  Identities=15%  Similarity=0.112  Sum_probs=350.7

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE--CCCcEEEEEcCCCCCC
Q 004745           22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA--GDAEVRLFNLSRFSGR   99 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~--~dg~i~vwd~~~~~~~   99 (732)
                      -..++..|-..++|-- ....|.+||++..++-+.+ ..|..+++|++|+++  |+++++|-  ....++||++....  
T Consensus        40 ~~gLa~~p~Sgl~aYp-AGCvVVlfn~~~~tQ~hlv-nssRk~~t~vAfS~~--GryvatGEcG~~pa~kVw~la~h~--  113 (1080)
T KOG1408|consen   40 ANGLASVPCSGLCAYP-AGCVVVLFNVDSCTQSHLV-NSSRKPLTCVAFSQN--GRYVATGECGRTPASKVWSLAFHG--  113 (1080)
T ss_pred             CCcccccccccceeec-cCcEEEEEcccccchhhee-cccCcceeEEEEcCC--CcEEEecccCCCccceeeeecccc--
Confidence            3445555544444421 2357889999888777766 688889999999999  69999984  56779999998642  


Q ss_pred             CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004745          100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  177 (732)
Q Consensus       100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (732)
                              .+..+..|+-.|++++|+| +++++++.+.  |-.|.+||.+.....                         
T Consensus       114 --------vVAEfvdHKY~vtcvaFsp-~~kyvvSVGsQHDMIVnv~dWr~N~~~-------------------------  159 (1080)
T KOG1408|consen  114 --------VVAEFVDHKYNVTCVAFSP-GNKYVVSVGSQHDMIVNVNDWRVNSSG-------------------------  159 (1080)
T ss_pred             --------chhhhhhccccceeeeecC-CCcEEEeeccccceEEEhhhhhhcccc-------------------------
Confidence                    3788999999999999999 5588887664  456788988765421                         


Q ss_pred             cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc-cccCC--C-----------CCCccc------ccc
Q 004745          178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS-CQKRM--S-----------PPPCVN------YFC  237 (732)
Q Consensus       178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~-~~~~~--~-----------~~~~~~------~~~  237 (732)
                       ....-...|..++|+.+ +.++++.+ +..|++|.++..+..+. ++...  .           ...|-.      .|.
T Consensus       160 -asnkiss~Vsav~fsEd-gSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfa  236 (1080)
T KOG1408|consen  160 -ASNKISSVVSAVAFSED-GSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFA  236 (1080)
T ss_pred             -cccccceeEEEEEEccC-Cceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEE
Confidence             01112337889999999 77888877 57899999987652211 00000  0           000000      000


Q ss_pred             c---cccccC----------CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCccee----eecCCCCceeeecc
Q 004745          238 P---MHLSEH----------GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR----YTVGDASKIMSFTP  300 (732)
Q Consensus       238 ~---~~~~~~----------~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~~  300 (732)
                      .   .++.+.          .-.....+|++.  ..++|++|+.+|.|++|+..+......+    ....+..+.....|
T Consensus       237 it~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~  314 (1080)
T KOG1408|consen  237 ITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEP  314 (1080)
T ss_pred             Eecccceeeechhhhhhhhhhhhccccceeee--ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccc
Confidence            0   000000          000001233333  5679999999999999998774322111    11111111111122


Q ss_pred             CCCCccCC----CCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchh-----hhhHhHHHHhcccCCC----
Q 004745          301 TLNGLELQ----PPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYY-----GIEACNEVLEGHLSGI----  367 (732)
Q Consensus       301 ~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v----  367 (732)
                      .+.+....    .....|.+....+.   ..-+|+.+.+     |++..-+....     ...+|.-.+...+-.|    
T Consensus       315 ~~s~~~~a~fPD~IA~~Fdet~~kls---cVYndhSlYv-----WDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~  386 (1080)
T KOG1408|consen  315 KNSESSPAIFPDAIACQFDETTDKLS---CVYNDHSLYV-----WDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPT  386 (1080)
T ss_pred             cccccCcccCCceeEEEecCCCceEE---EEEcCceEEE-----EeccccccccceeeeeeccceeeeeccccccccCcc
Confidence            21111111    11234444444554   5566677777     76653221100     0000111111111011    


Q ss_pred             CCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhH
Q 004745          368 GPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA  447 (732)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  447 (732)
                      ..-....+|.+.+.|+++|+|+.+.      |.                                  ....+        
T Consensus       387 ~aclp~~cF~TCSsD~TIRlW~l~~------ct----------------------------------nn~vy--------  418 (1080)
T KOG1408|consen  387 AACLPRGCFTTCSSDGTIRLWDLAF------CT----------------------------------NNQVY--------  418 (1080)
T ss_pred             cccCCccceeEecCCCcEEEeeccc------cc----------------------------------cccee--------
Confidence            1111223788888888888888541      00                                  00000        


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCC-CCCCCCcc--cccccccccccc-CCCCCCCCCCCCCCCCChhhhhhhcccCC
Q 004745          448 EKVENIKKHIAAAETEKNNKANDGGAR-SEPRTGRV--LSLSDIIYRSEA-NSDASQDGPRSEREDSDYDEEVEVDFHTS  523 (732)
Q Consensus       448 ~~~~~~~~~l~~~~~d~~~~~~~~~~~-~~~~~g~~--~~~~~~~~~~~~-~~~~s~d~~~~~~~~~~~~~~~~~~~~~~  523 (732)
                            .+.+.++..-+.+-.-+..+. .+...+-.  -..+++..+.+. +++.||+|                  +-+
T Consensus       419 ------rRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g------------------qhL  474 (1080)
T KOG1408|consen  419 ------RRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG------------------QHL  474 (1080)
T ss_pred             ------ecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc------------------cee
Confidence                  112222221111111000000 00000000  001122233333 78899999                  999


Q ss_pred             CCCCCCcccccccc-cCCcceeeccCCCCccccccCCC---CCCCCCCCCCCCCCccccccccccceeEeeeccccceee
Q 004745          524 VPGDEGRDVEANFL-HGSLNVRIHRRGDSARETVDANG---SSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIK  599 (732)
Q Consensus       524 ~s~~~d~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~  599 (732)
                      ++|+..++++++.+ +-+....+..|+..|.|+.||.-   .++||+++-+.-..|++....+.+++++.+|...+++|+
T Consensus       475 AsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvK  554 (1080)
T KOG1408|consen  475 ASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVK  554 (1080)
T ss_pred             cccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEE
Confidence            99999999999998 45677788999999999999963   468999965555566999888999999999999988776


Q ss_pred             eccc---------------------------------------------ccCCCCEEEEecCCCcEEEEEcCcccEEEEE
Q 004745          600 QASF---------------------------------------------LGQRGDYIASGSDDGRWFIWEKQTGRLIKML  634 (732)
Q Consensus       600 ~~~f---------------------------------------------~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l  634 (732)
                      -++-                                             ..|..+++++++.|..|+|||+++|+.++.|
T Consensus       555 Fa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~F  634 (1080)
T KOG1408|consen  555 FACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSF  634 (1080)
T ss_pred             EeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeee
Confidence            4431                                             1166779999999999999999999999999


Q ss_pred             ec---CcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCc-----hhHHHHHHHHHHHhhhcccccc
Q 004745          635 LG---DEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT-----ADVLEAMESNQRKLSRNREHSL  706 (732)
Q Consensus       635 ~g---H~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  706 (732)
                      +|   |.+....|...|.|.|||+...|.++.++|..+++++.+.-||+..|+     .|.+-+++.+-|.-+-+|..+.
T Consensus       635 Kgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  635 KGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            87   778899999999999999999999999999999999999999999885     4777777777777777776654

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=9.6e-30  Score=261.06  Aligned_cols=483  Identities=14%  Similarity=0.131  Sum_probs=330.7

Q ss_pred             ccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eeE---EEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745           11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLL---HSIETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus        11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~-~~~---~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      ...++.+|...|.-+.  +=|.+++++..++.+.||+.... +.+   ..+.+.-...|+++ ++|...=+.++.|+..|
T Consensus       106 i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G  182 (910)
T KOG1539|consen  106 IRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQG  182 (910)
T ss_pred             EEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCC
Confidence            3445666776666654  34778999999999999998874 111   12222222338777 56654346789999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      .+++|+++++          +.+.+++++...|+++.-+| --..++.|..+|+|.+++++..+.+              
T Consensus       183 ~lql~Nvrt~----------K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dkil--------------  237 (910)
T KOG1539|consen  183 RLQLWNVRTG----------KVVYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKIL--------------  237 (910)
T ss_pred             cEEEEEeccC----------cEEEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccCcEE--------------
Confidence            9999999985          33899999999999999999 5589999999999999999988732              


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                      ...+           ...+.|++++|..||...+++|+..|.+.+||+...+.+....                   ..|
T Consensus       238 ~sFk-----------~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~-------------------nah  287 (910)
T KOG1539|consen  238 MSFK-----------QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR-------------------NAH  287 (910)
T ss_pred             EEEE-----------ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee-------------------ccc
Confidence            1111           1136899999999988889999999999999999876654431                   234


Q ss_pred             ccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccC-CCcccccccc
Q 004745          247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFL-QTNIRVRGEV  325 (732)
Q Consensus       247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~  325 (732)
                      .+ .|+.+.|.|....|++++.|+.+++|=..++...         ++.   .....||..++.++.|. .+|..+.   
T Consensus       288 ~~-sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~---------pR~---LR~R~GHs~Pp~~irfy~~~g~~il---  351 (910)
T KOG1539|consen  288 YG-SVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV---------PRL---LRSRGGHSAPPSCIRFYGSQGHFIL---  351 (910)
T ss_pred             cC-CcccceecCCCceEeeccCCCceeEEEeeCCCCc---------chh---eeeccCCCCCchheeeeccCcEEEE---
Confidence            44 4899999999999999999999988866653321         111   12456888899999988 6888888   


Q ss_pred             ccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhc-ccC------CC-CCccc--hhhhhhHHHHhhccccccchhhh
Q 004745          326 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEG-HLS------GI-GPMLR--HECLCIRAALLLKRKWKNDAQMA  395 (732)
Q Consensus       326 ~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~v-~~~~~--~~~~~~~~~~~~~~~w~~~~~~~  395 (732)
                      +++.|++.+......             +..++.+.- |..      .+ +++..  .+++.-.......+.|+      
T Consensus       352 sa~~Drt~r~fs~~~-------------e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~------  412 (910)
T KOG1539|consen  352 SAKQDRTLRSFSVIS-------------ESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD------  412 (910)
T ss_pred             ecccCcchhhhhhhH-------------HHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhc------
Confidence            999999887622211             111111110 000      00 00000  00000000001111111      


Q ss_pred             HHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 004745          396 IRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARS  475 (732)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~  475 (732)
                                                                                 +.++..-.+.....|+..+. 
T Consensus       413 -----------------------------------------------------------Nv~~~h~~~~~~~tW~~~n~-  432 (910)
T KOG1539|consen  413 -----------------------------------------------------------NVITAHKGKRSAYTWNFRNK-  432 (910)
T ss_pred             -----------------------------------------------------------ceeEEecCcceEEEEeccCc-
Confidence                                                                       11122222334445552221 


Q ss_pred             CCCCCcccccccccccccc----CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCccccccccc-CCcceee---cc
Q 004745          476 EPRTGRVLSLSDIIYRSEA----NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLH-GSLNVRI---HR  547 (732)
Q Consensus       476 ~~~~g~~~~~~~~~~~~~~----~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~-~~~~~~~---~~  547 (732)
                        ..|+.. +.+..+....    +++.++-|                  .+..-|...+.|.++++- |-...++   +.
T Consensus       433 --~~G~~~-L~~~~~~~~~~~~~av~vs~CG------------------NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a  491 (910)
T KOG1539|consen  433 --TSGRHV-LDPKRFKKDDINATAVCVSFCG------------------NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA  491 (910)
T ss_pred             --ccccEE-ecCccccccCcceEEEEEeccC------------------ceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence              112111 1111111111    56667777                  677888888999999984 4444455   68


Q ss_pred             CCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEe-eeccccceeeecccccCCCCEEEEecCCCcEEEEEcC
Q 004745          548 RGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYV-GHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQ  626 (732)
Q Consensus       548 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~  626 (732)
                      |..+|+.++...-++.+++++.++....|+... ..+++.+. |+.  ++.+.    .+-....+|.+..|-.|+++|+.
T Consensus       492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~l~~~--~~~iv----~hr~s~l~a~~~ddf~I~vvD~~  564 (910)
T KOG1539|consen  492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLRLGSS--ITGIV----YHRVSDLLAIALDDFSIRVVDVV  564 (910)
T ss_pred             ccCceeEEEecCCCceEEEccCcceEEEEecCC-cceeeeeccCCC--cceee----eeehhhhhhhhcCceeEEEEEch
Confidence            999999999999999999998777777798766 34444443 332  22233    36677889999999999999999


Q ss_pred             cccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCcc
Q 004745          627 TGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSI  674 (732)
Q Consensus       627 tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~  674 (732)
                      |-+.++.|.||++.|++++|||||++|+|++.|++||+||+.++..+-
T Consensus       565 t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID  612 (910)
T KOG1539|consen  565 TRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID  612 (910)
T ss_pred             hhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence            999999999999999999999999999999999999999999998873

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.3e-29  Score=248.05  Aligned_cols=222  Identities=17%  Similarity=0.260  Sum_probs=194.6

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      +...++.+.--.-||++..|-+-.+++++|+.|..|||++..+++.++.| ..|.+-|.|++.+|..  .+++|+|.|-+
T Consensus        44 tqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt~--P~vLtsSDDm~  120 (794)
T KOG0276|consen   44 TQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPTL--PYVLTSSDDMT  120 (794)
T ss_pred             cceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCCC--CeEEecCCccE
Confidence            44566777777889999999999999999999999999999999999999 8999999999999994  89999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      |++||.+..         +.+.+++.||..-|.+++|+|.+++.|++++-|++|++|.+.++.                 
T Consensus       121 iKlW~we~~---------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-----------------  174 (794)
T KOG0276|consen  121 IKLWDWENE---------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-----------------  174 (794)
T ss_pred             EEEeeccCc---------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-----------------
Confidence            999999853         356899999999999999999999999999999999999998765                 


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                              +..+..+|...|+++.+-+-+ ..+|++|+.|.+|+|||.++..             |++++       .||
T Consensus       175 --------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-------------CV~TL-------eGH  226 (794)
T KOG0276|consen  175 --------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-------------CVQTL-------EGH  226 (794)
T ss_pred             --------CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-------------HHHHh-------hcc
Confidence                    234455788899999998752 3499999999999999999874             55554       788


Q ss_pred             ccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceee
Q 004745          247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY  287 (732)
Q Consensus       247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~  287 (732)
                      .. .|..+.|+|.-.++++|+.||+|+||+-.+.+....+.
T Consensus       227 t~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn  266 (794)
T KOG0276|consen  227 TN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN  266 (794)
T ss_pred             cc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh
Confidence            77 59999999999999999999999999998866544443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.3e-29  Score=229.41  Aligned_cols=215  Identities=21%  Similarity=0.334  Sum_probs=177.0

Q ss_pred             EeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC------------------CeeEEEEccCCCcCeEEEEEecCC
Q 004745           13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFVPET   74 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~------------------~~~~~~~~~~h~~~V~~~~~s~~~   74 (732)
                      ..+..|+.++++.+|+|||.++|||+.|..|+|.|++.                  .-.++++ ..|...|+++.|+|.+
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPre  184 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPRE  184 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecchh
Confidence            45778999999999999999999999999999999862                  1245555 6899999999999995


Q ss_pred             CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004745           75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  154 (732)
Q Consensus        75 ~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~  154 (732)
                        ..|++|+.|++|++||+.....+.       ..+.+ ....+|.+|.|+| .+.+++.|.....+++||+.+.+....
T Consensus       185 --~ILiS~srD~tvKlFDfsK~saKr-------A~K~~-qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfvs  253 (430)
T KOG0640|consen  185 --TILISGSRDNTVKLFDFSKTSAKR-------AFKVF-QDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVS  253 (430)
T ss_pred             --heEEeccCCCeEEEEecccHHHHH-------HHHHh-hccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeee
Confidence              899999999999999998643221       12223 3467899999999 558999999999999999998773211


Q ss_pred             CCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccc
Q 004745          155 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  234 (732)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  234 (732)
                                            ......|...|+++.+++. +++.++++.||.|++||--+.             +|++
T Consensus       254 ----------------------anPd~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~-------------rCv~  297 (430)
T KOG0640|consen  254 ----------------------ANPDDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSN-------------RCVR  297 (430)
T ss_pred             ----------------------cCcccccccceeEEEecCC-ccEEEEeccCCcEEeeccccH-------------HHHH
Confidence                                  1122357789999999999 889999999999999998766             5555


Q ss_pred             cccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          235 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      ++.      ..|.+..|.+..|..+|+++++++.|..|++|++.+++
T Consensus       298 t~~------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R  338 (430)
T KOG0640|consen  298 TIG------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR  338 (430)
T ss_pred             HHH------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence            554      44666679999999999999999999999999999854

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.1e-28  Score=220.20  Aligned_cols=206  Identities=19%  Similarity=0.340  Sum_probs=167.1

Q ss_pred             EeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEE-ccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004745           13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF   91 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~-~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw   91 (732)
                      +.+++|...|.+++|+.+|..|++|+.|++++||++...+.+... ..+|.+.|-.++|+|.. .+++++++.|.+|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceEEEE
Confidence            778899999999999999999999999999999999877554432 25899999999999987 5899999999999999


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      |++..          ++.......... .-+.|+|++ .+++.++.|..|...|.++.+..                   
T Consensus        93 d~r~~----------k~~~~i~~~~en-i~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~-------------------  141 (313)
T KOG1407|consen   93 DIRSG----------KCTARIETKGEN-INITWSPDG-EYIAVGNKDDRITFIDARTYKIV-------------------  141 (313)
T ss_pred             EeccC----------cEEEEeeccCcc-eEEEEcCCC-CEEEEecCcccEEEEEeccccee-------------------
Confidence            99974          234554433333 457899955 88889999999999999987632                   


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  251 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (732)
                             ........+.-+.|+.+ .++++.....|+|.|......+++..+                    ..|.. ..
T Consensus       142 -------~~~~~~~e~ne~~w~~~-nd~Fflt~GlG~v~ILsypsLkpv~si--------------------~AH~s-nC  192 (313)
T KOG1407|consen  142 -------NEEQFKFEVNEISWNNS-NDLFFLTNGLGCVEILSYPSLKPVQSI--------------------KAHPS-NC  192 (313)
T ss_pred             -------ehhcccceeeeeeecCC-CCEEEEecCCceEEEEecccccccccc--------------------ccCCc-ce
Confidence                   01122346778888866 567777677899999999988877766                    55654 48


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          252 THVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       252 ~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .++.|+|+|++|++|+.|..+.+||++.
T Consensus       193 icI~f~p~GryfA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  193 ICIEFDPDGRYFATGSADALVSLWDVDE  220 (313)
T ss_pred             EEEEECCCCceEeeccccceeeccChhH
Confidence            8999999999999999999999999877

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=6.7e-31  Score=248.38  Aligned_cols=247  Identities=18%  Similarity=0.244  Sum_probs=207.7

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      .....++.|.++|+++.|+++|.+++||+.+|.|++|+.. ...++.+...|...|.+++|+|+  +..+++|+.||+|+
T Consensus       129 nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ik  205 (464)
T KOG0284|consen  129 NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGTIK  205 (464)
T ss_pred             eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCC--CceeEEecCCCeEE
Confidence            3445678899999999999999999999999999999965 44455553456699999999997  58999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  169 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  169 (732)
                      |||......          -..+.+|.-.|.++.|+|.. .+|+++|+|..|++||.+++.                   
T Consensus       206 iWdf~~~ke----------e~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~-------------------  255 (464)
T KOG0284|consen  206 IWDFRMPKE----------ERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGS-------------------  255 (464)
T ss_pred             EEeccCCch----------hheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcc-------------------
Confidence            999986533          45679999999999999955 899999999999999999987                   


Q ss_pred             cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004745          170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                            .+.....|...|..+.|+|+ +++|++++.|..++++|+++.+.+..+                    .+|.. 
T Consensus       256 ------cl~tlh~HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkEl~~~--------------------r~Hkk-  307 (464)
T KOG0284|consen  256 ------CLATLHGHKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKELFTY--------------------RGHKK-  307 (464)
T ss_pred             ------hhhhhhhccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHHHHHh--------------------hcchh-
Confidence                  34566678889999999999 699999999999999999988777655                    67777 


Q ss_pred             cEEEEEEcC-CCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccC
Q 004745          250 HLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATG  328 (732)
Q Consensus       250 ~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  328 (732)
                      .+++++|+| ...+|.+|+.||.|..|.+...+....               .-..|+..+-++++.|-|..++   +++
T Consensus       308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~---------------i~~AHd~~iwsl~~hPlGhil~---tgs  369 (464)
T KOG0284|consen  308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE---------------IPPAHDGEIWSLAYHPLGHILA---TGS  369 (464)
T ss_pred             hheeeccccccccceeeccCCCceEEEeccccccccC---------------CCcccccceeeeeccccceeEe---ecC
Confidence            499999999 556888899999999999884221110               2345666777888888899999   999


Q ss_pred             cchhhHH
Q 004745          329 LGKCRML  335 (732)
Q Consensus       329 ~d~~~~l  335 (732)
                      .|++++.
T Consensus       370 nd~t~rf  376 (464)
T KOG0284|consen  370 NDRTVRF  376 (464)
T ss_pred             CCcceee
Confidence            9999999

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=4.7e-29  Score=227.05  Aligned_cols=162  Identities=22%  Similarity=0.332  Sum_probs=135.1

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  138 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  138 (732)
                      .+|++.|+.+.|+|+  |.+|+||+.|..|.+|++..   .+      +....+++|++.|..+.|.+++ +.+++++.|
T Consensus        44 ~gh~geI~~~~F~P~--gs~~aSgG~Dr~I~LWnv~g---dc------eN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtD  111 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPD--GSCFASGGSDRAIVLWNVYG---DC------ENFWVLKGHSGAVMELHGMRDG-SHILSCGTD  111 (338)
T ss_pred             CCCcceEEEEEECCC--CCeEeecCCcceEEEEeccc---cc------cceeeeccccceeEeeeeccCC-CEEEEecCC
Confidence            699999999999998  69999999999999999763   22      3367788999999999999955 889999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      .+|+.||+++++.                         ...+..|..-|+++.-+.-+..++.+|+.|+++++||+++..
T Consensus       112 k~v~~wD~~tG~~-------------------------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~  166 (338)
T KOG0265|consen  112 KTVRGWDAETGKR-------------------------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE  166 (338)
T ss_pred             ceEEEEeccccee-------------------------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence            9999999999983                         233455666777777554556688889999999999999887


Q ss_pred             CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .++++.                    .  ..+++++.|..++..+.+|+-|+.|++||++.
T Consensus       167 ~~~t~~--------------------~--kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~  205 (338)
T KOG0265|consen  167 AIKTFE--------------------N--KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK  205 (338)
T ss_pred             hhhccc--------------------c--ceeEEEEEecccccceeeccccCceeeecccc
Confidence            665542                    1  12599999999999999999999999999876

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=1.8e-29  Score=234.48  Aligned_cols=162  Identities=20%  Similarity=0.315  Sum_probs=145.0

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  138 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  138 (732)
                      .+|.+.|.|+++.|.  +..|++|+.|++|+|||+.+++.          ..++.||...|..+++++-. .++++++.|
T Consensus       148 ~gHlgWVr~vavdP~--n~wf~tgs~DrtikIwDlatg~L----------kltltGhi~~vr~vavS~rH-pYlFs~ged  214 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPG--NEWFATGSADRTIKIWDLATGQL----------KLTLTGHIETVRGVAVSKRH-PYLFSAGED  214 (460)
T ss_pred             hhccceEEEEeeCCC--ceeEEecCCCceeEEEEcccCeE----------EEeecchhheeeeeeecccC-ceEEEecCC
Confidence            799999999999998  48999999999999999998542          57888999999999999965 788899999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      +.|+.||++..+                         .+....+|...|.+++..|. -..|++|+.|.++||||+++..
T Consensus       215 k~VKCwDLe~nk-------------------------vIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~  268 (460)
T KOG0285|consen  215 KQVKCWDLEYNK-------------------------VIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRA  268 (460)
T ss_pred             CeeEEEechhhh-------------------------hHHHhccccceeEEEecccc-ceeEEecCCcceEEEeeecccc
Confidence            999999999877                         34455678889999999998 6799999999999999999988


Q ss_pred             CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      ++..+                    .||.. +|.++.+.|....+++|+.|++|++||+..+
T Consensus       269 ~V~~l--------------------~GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag  309 (460)
T KOG0285|consen  269 SVHVL--------------------SGHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAG  309 (460)
T ss_pred             eEEEe--------------------cCCCC-cceeEEeecCCCceEEecCCceEEEeeeccC
Confidence            77666                    77877 6999999998888999999999999999874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.97  E-value=5.7e-30  Score=257.57  Aligned_cols=543  Identities=15%  Similarity=0.129  Sum_probs=331.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCC-CCEEEEEECCCcEEEEEcCCCCCCCCC
Q 004745           24 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-DELVVSGAGDAEVRLFNLSRFSGRGLD  102 (732)
Q Consensus        24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~-g~~l~s~~~dg~i~vwd~~~~~~~~~~  102 (732)
                      ...|.|.+ .+|.|. ...|.+||..+......+ .+|..+|+|+.|.|.+. ..++++|+.|++|.+|.++....    
T Consensus        19 v~sw~~~~-~vafGa-~~~Iav~dp~k~~i~t~l-~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~----   91 (764)
T KOG1063|consen   19 VSSWGPGG-LVAFGA-GPAIAVADPEKILIVTTL-DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL----   91 (764)
T ss_pred             cccccccc-eEEecC-CceEEEeCcccceeEEec-cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe----
Confidence            34554443 455554 578999998877666666 89999999999999841 12799999999999999983221    


Q ss_pred             CCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCC-------------CCCC---C---------
Q 004745          103 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC-------------PPAG---S---------  157 (732)
Q Consensus       103 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~-------------~~~~---~---------  157 (732)
                          .++..+.+|...+.++.-   ........+.|+.+.+||.+..+..             +...   .         
T Consensus        92 ----~~i~~~~g~~~~~~cv~a---~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~  164 (764)
T KOG1063|consen   92 ----IKIYTIQGHCKECVCVVA---RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLAC  164 (764)
T ss_pred             ----EEEEeecCcceeEEEEEe---eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEe
Confidence                346777777666665543   2233333378999999999655510             0000   0         


Q ss_pred             CCcccceEEeeccCCccccccCCCCCccceEEEEecCCCC--CEEEEEeCCCeEEEEECCCCCCCcccccC----CCCC-
Q 004745          158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP--HLLLVGGSDAFARLYDRRMLPPLTSCQKR----MSPP-  230 (732)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~l~tg~~dg~v~iwd~~~~~~~~~~~~~----~~~~-  230 (732)
                      +...+...++.-.......+....+|...|.+++|...++  .+|++++.|..||||.+.-.....+....    ..+. 
T Consensus       165 Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~  244 (764)
T KOG1063|consen  165 GGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNL  244 (764)
T ss_pred             cCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCC
Confidence            0111111222222334456677889999999999987643  47899999999999987644322211100    0000 


Q ss_pred             ---Cc---cccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCC
Q 004745          231 ---PC---VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG  304 (732)
Q Consensus       231 ---~~---~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (732)
                         .+   +++....+....||.+ +|+++.|+|.+..|++++.|.++.+|...+..-.-.-        .+. ...+.+
T Consensus       245 ~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~--------~vR-lGe~gg  314 (764)
T KOG1063|consen  245 PVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD--------VVR-LGEVGG  314 (764)
T ss_pred             ceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEE--------EEE-eecccc
Confidence               01   1111111122257887 8999999999999999999999999987763211100        000 001223


Q ss_pred             ccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhh
Q 004745          305 LELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLL  384 (732)
Q Consensus       305 ~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  384 (732)
                      .........|+|++..+.   +.+.-+..++     |.-+...     .+.....+.||...                  
T Consensus       315 ~a~GF~g~lw~~n~~~ii---~~g~~Gg~hl-----Wkt~d~~-----~w~~~~~iSGH~~~------------------  363 (764)
T KOG1063|consen  315 SAGGFWGGLWSPNSNVII---AHGRTGGFHL-----WKTKDKT-----FWTQEPVISGHVDG------------------  363 (764)
T ss_pred             cccceeeEEEcCCCCEEE---EecccCcEEE-----EeccCcc-----ceeecccccccccc------------------
Confidence            344455667888887776   7777777777     4411111     11223344555444                  


Q ss_pred             ccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhc
Q 004745          385 KRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEK  464 (732)
Q Consensus       385 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~  464 (732)
                                                                       |..+.+.|+           +.+|.+++.|.
T Consensus       364 -------------------------------------------------V~dv~W~ps-----------GeflLsvs~DQ  383 (764)
T KOG1063|consen  364 -------------------------------------------------VKDVDWDPS-----------GEFLLSVSLDQ  383 (764)
T ss_pred             -------------------------------------------------ceeeeecCC-----------CCEEEEecccc
Confidence                                                             344445554           45555666666


Q ss_pred             cCCCCCCCCCCCCCCCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcc
Q 004745          465 NNKANDGGARSEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLN  542 (732)
Q Consensus       465 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~  542 (732)
                      +-+++-.-.    ....--.+....-|.+.  ++++-+..                  -.+++|.+++..+++...-...
T Consensus       384 TTRlFa~wg----~q~~wHEiaRPQiHGyDl~c~~~vn~~------------------~~FVSgAdEKVlRvF~aPk~fv  441 (764)
T KOG1063|consen  384 TTRLFARWG----RQQEWHEIARPQIHGYDLTCLSFVNED------------------LQFVSGADEKVLRVFEAPKSFV  441 (764)
T ss_pred             ceeeecccc----cccceeeecccccccccceeeehccCC------------------ceeeecccceeeeeecCcHHHH
Confidence            655543110    00000011111222222  34444422                  5678888888888877622211


Q ss_pred             ee--------e-----ccCCCCccccccCCCCCCC-CC--CCC----------CCCCCc--------cccccccccceeE
Q 004745          543 VR--------I-----HRRGDSARETVDANGSSGS-PS--SSS----------QNDRIP--------YQPETVIDMKQRY  588 (732)
Q Consensus       543 ~~--------~-----~~~~~~v~~~~~s~d~~~l-~~--~~~----------~~~~~~--------~~~~~~~~~~~~~  588 (732)
                      ..        +     ......|..+..|++.-+. .+  ++.          ..-...        ....+.+..++++
T Consensus       442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL  521 (764)
T KOG1063|consen  442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL  521 (764)
T ss_pred             HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence            11        1     1112234444444443332 11  110          000000        1122235567889


Q ss_pred             eeeccccceeeecccccCCCCEEEEecCC-----CcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEE
Q 004745          589 VGHCNVGTDIKQASFLGQRGDYIASGSDD-----GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIK  663 (732)
Q Consensus       589 ~gh~~~~~~i~~~~f~s~dg~~lasgs~D-----g~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~  663 (732)
                      +||...++++.    .||+|+++||++..     .-|++|+..+...+..|.+|+-.|+.++|||||++|+|+|.|.++.
T Consensus       522 YGHGyEv~~l~----~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s  597 (764)
T KOG1063|consen  522 YGHGYEVYALA----ISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS  597 (764)
T ss_pred             ccCceeEEEEE----ecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence            99999988887    79999999999764     4589999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCc----cccCCCCCCC-----chhHHHHHHHHHHHhhhccccccc
Q 004745          664 IWTPSASVPS----IVSGGAAGPD-----TADVLEAMESNQRKLSRNREHSLS  707 (732)
Q Consensus       664 vW~~~~~~~~----~~~~gh~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  707 (732)
                      ||........    ...+.|+--+     .++..++++.+.|+...+|.....
T Consensus       598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            9998544322    2345565333     456777999999999999988754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=7.7e-30  Score=237.62  Aligned_cols=202  Identities=17%  Similarity=0.243  Sum_probs=165.2

Q ss_pred             ccEeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           11 QERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        11 ~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      .+..|.||.++|.|++=+|.. ..+|+|+.||.|+|||+.+-.++.++ ..|.+.|..|++...    .+++++.|.+|+
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~~----~~~tvgdDKtvK  132 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQT----SFFTVGDDKTVK  132 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEeccc----ceEEecCCccee
Confidence            456689999999999999977 78999999999999999999999999 899999999999874    689999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  169 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  169 (732)
                      .|.+..           .+++++.+ ...+..|.-+. ....++|||.  .|.|||.+...++                 
T Consensus       133 ~wk~~~-----------~p~~tilg-~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv-----------------  180 (433)
T KOG0268|consen  133 QWKIDG-----------PPLHTILG-KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPV-----------------  180 (433)
T ss_pred             eeeccC-----------Ccceeeec-ccccccccccc-ccccccccCc--eeeecccccCCcc-----------------
Confidence            999874           23566654 45667777666 4488999986  5999998776532                 


Q ss_pred             cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004745          170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                              ....-....|.++.|+|.....|++|+.|+.|.+||++...++.+....                      .
T Consensus       181 --------~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~----------------------m  230 (433)
T KOG0268|consen  181 --------SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT----------------------M  230 (433)
T ss_pred             --------ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee----------------------c
Confidence                    1122234478999999998889999999999999999999887765221                      1


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .-+.++|+|++-.+++|+.|..++.||++.
T Consensus       231 RTN~IswnPeafnF~~a~ED~nlY~~DmR~  260 (433)
T KOG0268|consen  231 RTNTICWNPEAFNFVAANEDHNLYTYDMRN  260 (433)
T ss_pred             cccceecCccccceeeccccccceehhhhh
Confidence            256799999888889999999999998877

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.5e-28  Score=261.02  Aligned_cols=164  Identities=22%  Similarity=0.366  Sum_probs=139.4

Q ss_pred             CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC
Q 004745           60 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  139 (732)
Q Consensus        60 ~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  139 (732)
                      .+...|.++.|+++  |..+++++.|+.+++|++.....        .....+.+|...|.+++|+|++ .++++++.|+
T Consensus       157 ~~~~sv~~~~fs~~--g~~l~~~~~~~~i~~~~~~~~~~--------~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~  225 (456)
T KOG0266|consen  157 HECPSVTCVDFSPD--GRALAAASSDGLIRIWKLEGIKS--------NLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDK  225 (456)
T ss_pred             cccCceEEEEEcCC--CCeEEEccCCCcEEEeecccccc--------hhhccccccccceeeeEECCCC-cEEEEecCCc
Confidence            34788999999999  58999999999999999964321        1256668999999999999955 8999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004745          140 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  219 (732)
Q Consensus       140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~  219 (732)
                      +|++||+.....                        .+....+|...|++++|+|+ ++++++|+.|++|+|||+++++.
T Consensus       226 tiriwd~~~~~~------------------------~~~~l~gH~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~~  280 (456)
T KOG0266|consen  226 TLRIWDLKDDGR------------------------NLKTLKGHSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGEC  280 (456)
T ss_pred             eEEEeeccCCCe------------------------EEEEecCCCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCeE
Confidence            999999944321                        23445578889999999999 59999999999999999999766


Q ss_pred             CcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          220 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      +..+                    .+|.+ .|++++|++++++|++++.|+.|+|||+.++
T Consensus       281 ~~~l--------------------~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~  320 (456)
T KOG0266|consen  281 VRKL--------------------KGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETG  320 (456)
T ss_pred             EEee--------------------eccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence            5554                    66777 5999999999999999999999999999984

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=9.3e-30  Score=241.12  Aligned_cols=204  Identities=21%  Similarity=0.298  Sum_probs=165.6

Q ss_pred             ccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745           11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus        11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      ....+..|.+.|..+.|-++...|++|+.|..|++|++..++  .+.++ .+..++|+.++|.++  +.++++++.|+.+
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL-aGs~g~it~~d~d~~--~~~~iAas~d~~~  243 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL-AGSLGNITSIDFDSD--NKHVIAASNDKNL  243 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh-hccCCCcceeeecCC--CceEEeecCCCce
Confidence            345678899999999999998899999999999999987666  55556 678889999999998  5899999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      ++|++....          ...++.+|++.|+++.|.... ..+++|+.|.+|+.||+.........+            
T Consensus       244 r~Wnvd~~r----------~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l------------  300 (459)
T KOG0288|consen  244 RLWNVDSLR----------LRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL------------  300 (459)
T ss_pred             eeeeccchh----------hhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecccc------------
Confidence            999998632          368899999999999998744 448999999999999998855321111            


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                                    ....+..|..+   ...+++|-.|++||+||+++.......                    ..+  
T Consensus       301 --------------~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv--------------------~~g--  341 (459)
T KOG0288|consen  301 --------------PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSV--------------------PLG--  341 (459)
T ss_pred             --------------ccccccceEec---ceeeeecccccceEEEeccCCceeeEe--------------------ecC--
Confidence                          01134445554   347889999999999999987655433                    112  


Q ss_pred             ccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +.|+++..+++|..|++.+.|.++.+.|+++
T Consensus       342 g~vtSl~ls~~g~~lLsssRDdtl~viDlRt  372 (459)
T KOG0288|consen  342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLRT  372 (459)
T ss_pred             cceeeEeeccCCeEEeeecCCCceeeeeccc
Confidence            2599999999999999999999999999998

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.7e-29  Score=244.23  Aligned_cols=238  Identities=33%  Similarity=0.562  Sum_probs=193.8

Q ss_pred             hhhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745            4 SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus         4 ~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      .+++++.+...|.+|.+.|+.+.|+..|..|++|+.|..|.+||+..++....+..+|...|...+|.|.+....|++++
T Consensus       127 ~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s  206 (559)
T KOG1334|consen  127 LFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS  206 (559)
T ss_pred             HHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc
Confidence            47888899999999999999999999999999999999999999999999999988999999999999987678899999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      .||.+++=.+..... +      +....+..|.++|..++.-|+.+..|.+++.|+.+.-.|++........        
T Consensus       207 ~dgqvr~s~i~~t~~-~------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~--------  271 (559)
T KOG1334|consen  207 RDGQVRVSEILETGY-V------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF--------  271 (559)
T ss_pred             ccCceeeeeeccccc-e------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee--------
Confidence            999999987764322 1      2345667799999999999999999999999999999999887643111        


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                         . .+.       .........++++.+|.+.+.+++|+.|-.+|+||.+.......       ...+..|+|.++..
T Consensus       272 ---~-cr~-------~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~-------n~~~~~f~p~hl~~  333 (559)
T KOG1334|consen  272 ---V-CRE-------ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN-------NGVLDKFCPHHLVE  333 (559)
T ss_pred             ---e-eec-------cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc-------cchhhhcCCccccc
Confidence               0 000       01111346789999998888999999999999999987543211       13467788888866


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEecCCeEEEEE
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD  276 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd  276 (732)
                      ..+.  .|++++|+.++.-|+++-.|-.|++|+
T Consensus       334 d~~v--~ITgl~Ysh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  334 DDPV--NITGLVYSHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             cCcc--cceeEEecCCccceeeeecccceEEec
Confidence            3333  499999999988899999999999993

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=2e-28  Score=219.19  Aligned_cols=213  Identities=21%  Similarity=0.352  Sum_probs=172.5

Q ss_pred             eeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004745           14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL   93 (732)
Q Consensus        14 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~   93 (732)
                      .|+||..+++.+.|+.+|.+|++++.|.++.||-..+|+.+.++ .+|+++|.|+..+-++  +++++|+.|.++++||+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~s--~~liTGSAD~t~kLWDv   81 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWDS--KHLITGSADQTAKLWDV   81 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCCc--ceeeeccccceeEEEEc
Confidence            47899999999999999999999999999999999999999999 8999999999999986  89999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC-----CCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      ++++.          +..++ -..+|..+.|++++ ++++.+..     .+.|.++|++......    ...+       
T Consensus        82 ~tGk~----------la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~----~s~e-------  138 (327)
T KOG0643|consen   82 ETGKQ----------LATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDI----DSEE-------  138 (327)
T ss_pred             CCCcE----------EEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhh----cccC-------
Confidence            98532          45555 47889999999954 66665543     4679999998654210    0000       


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                             ++...+.+...++.+-|.|. +..|++|..||.|.+||+++++.+....                   .-|..
T Consensus       139 -------p~~kI~t~~skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g~~~v~s~-------------------~~h~~  191 (327)
T KOG0643|consen  139 -------PYLKIPTPDSKITSALWGPL-GETIIAGHEDGSISIYDARTGKELVDSD-------------------EEHSS  191 (327)
T ss_pred             -------ceEEecCCccceeeeeeccc-CCEEEEecCCCcEEEEEcccCceeeech-------------------hhhcc
Confidence                   11112223458899999999 7899999999999999999976442211                   22444


Q ss_pred             ccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                       .|+.+.++|+..++++++.|.+-++||+.+.
T Consensus       192 -~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl  222 (327)
T KOG0643|consen  192 -KINDLQFSRDRTYFITGSKDTTAKLVDVRTL  222 (327)
T ss_pred             -ccccccccCCcceEEecccCccceeeeccce
Confidence             5999999999999999999999999999983

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.7e-29  Score=257.68  Aligned_cols=214  Identities=20%  Similarity=0.324  Sum_probs=169.2

Q ss_pred             ccEeee-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC--------------------------------C------
Q 004745           11 QERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--------------------------------R------   51 (732)
Q Consensus        11 ~~~~l~-~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~--------------------------------~------   51 (732)
                      ..+.+. +|.+.|.++.||+||+|||+||.|+.|+||.+..                                .      
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            445566 8999999999999999999999999999998754                                0      


Q ss_pred             ----------------------eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004745           52 ----------------------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  109 (732)
Q Consensus        52 ----------------------~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  109 (732)
                                            +.++.+ .||.+.|.++.|+.+   ++|+|++.|.+||+|++...          .|+
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~----------~CL  403 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRK----------ECL  403 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhh-hccchhheecccccC---CeeEeccccccEEeecCCCc----------cee
Confidence                                  011222 589999999999998   79999999999999999853          346


Q ss_pred             eeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEE
Q 004745          110 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  189 (732)
Q Consensus       110 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  189 (732)
                      ..|. |.+-|+|++|+|.+.++|++|+-||.||||++...+..             .|             ..-..-|++
T Consensus       404 ~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-------------~W-------------~Dl~~lITA  456 (712)
T KOG0283|consen  404 KVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-------------DW-------------NDLRDLITA  456 (712)
T ss_pred             eEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE-------------ee-------------hhhhhhhee
Confidence            6665 99999999999999999999999999999999876521             11             112247999


Q ss_pred             EEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC-CEEEEEec
Q 004745          190 CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYS  268 (732)
Q Consensus       190 i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g-~~l~~~~~  268 (732)
                      ++|.|+ |+..++|+.+|.+++|+....+....+.-......          . ..+ . .|+.+.|.|.. ..+++.+.
T Consensus       457 vcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K----------k-~~~-~-rITG~Q~~p~~~~~vLVTSn  522 (712)
T KOG0283|consen  457 VCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK----------K-KQG-K-RITGLQFFPGDPDEVLVTSN  522 (712)
T ss_pred             EEeccC-CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc----------c-ccC-c-eeeeeEecCCCCCeEEEecC
Confidence            999999 89999999999999999987765433321111000          0 111 1 59999999844 46888899


Q ss_pred             CCeEEEEECCC
Q 004745          269 GEHVYLMDVNH  279 (732)
Q Consensus       269 dg~v~iwd~~~  279 (732)
                      |..|||||.++
T Consensus       523 DSrIRI~d~~~  533 (712)
T KOG0283|consen  523 DSRIRIYDGRD  533 (712)
T ss_pred             CCceEEEeccc
Confidence            99999999876

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=4.6e-28  Score=255.33  Aligned_cols=198  Identities=22%  Similarity=0.344  Sum_probs=169.4

Q ss_pred             eeec-cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEE-EccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004745           14 ELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS-IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF   91 (732)
Q Consensus        14 ~l~~-h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~-~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw   91 (732)
                      .+.+ |...+.+..|.  ..++++++.|++|++||..++..+.. + .+|.+.|.+++|...  +.+|++|+.|.++++|
T Consensus       202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l-~GH~g~V~~l~~~~~--~~~lvsgS~D~t~rvW  276 (537)
T KOG0274|consen  202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRL-VGHFGGVWGLAFPSG--GDKLVSGSTDKTERVW  276 (537)
T ss_pred             eecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeec-cCCCCCceeEEEecC--CCEEEEEecCCcEEeE
Confidence            3444 56788888888  56899999999999999999999888 6 899999999999874  4899999999999999


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      |..++          .+...+.+|...|.++...+   .++++|+.|.+|++|++.++..                    
T Consensus       277 d~~sg----------~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~--------------------  323 (537)
T KOG0274|consen  277 DCSTG----------ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGAC--------------------  323 (537)
T ss_pred             ecCCC----------cEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcce--------------------
Confidence            98863          34899999999999998854   6788999999999999997762                    


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  251 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (732)
                           +....+|..+|.++..+   +.++++|+.|++|++||+.+++.+..+                    .||.. .|
T Consensus       324 -----l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl--------------------~gH~~-~V  374 (537)
T KOG0274|consen  324 -----LNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSL--------------------SGHTG-RV  374 (537)
T ss_pred             -----EEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeee--------------------cCCcc-eE
Confidence                 22333477899999998   459999999999999999988766555                    77777 69


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          252 THVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       252 ~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +++.+.+. ..+++|+.|+.|++||+.+
T Consensus       375 ~sl~~~~~-~~~~Sgs~D~~IkvWdl~~  401 (537)
T KOG0274|consen  375 YSLIVDSE-NRLLSGSLDTTIKVWDLRT  401 (537)
T ss_pred             EEEEecCc-ceEEeeeeccceEeecCCc
Confidence            99988776 7899999999999999988

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=3.6e-28  Score=235.73  Aligned_cols=455  Identities=14%  Similarity=0.153  Sum_probs=298.8

Q ss_pred             ccEeeeccCCceeEEEEcCCCCEEEEEeCCC--------cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEE
Q 004745           11 QERELEGHQGCVNAISWNSKGSLLISGSDDT--------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG   82 (732)
Q Consensus        11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg--------~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~   82 (732)
                      -.+.+-||+..|.|++.+||.-++++|-.-|        .|||||..+-..++.+ ..-...|.|++|++...|.+|+.-
T Consensus        96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~-g~f~~GV~~vaFsk~~~G~~l~~v  174 (626)
T KOG2106|consen   96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVI-GFFDRGVTCVAFSKINGGSLLCAV  174 (626)
T ss_pred             hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeee-ccccccceeeeecccCCCceEEEe
Confidence            3456779999999999999998899875544        5999998888888877 456678999999997656777665


Q ss_pred             --ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004745           83 --AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        83 --~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  160 (732)
                        +.+..+.|||...+..          ....+.-+..|....|+|.+++++++++. +.+.+|+++.+....+      
T Consensus       175 D~s~~h~lSVWdWqk~~~----------~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~------  237 (626)
T KOG2106|consen  175 DDSNPHMLSVWDWQKKAK----------LGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKR------  237 (626)
T ss_pred             cCCCccccchhhchhhhc----------cCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEE------
Confidence              3456799999986432          33444556788999999999999999887 7899999988763210      


Q ss_pred             ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccc
Q 004745          161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  240 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (732)
                                    ..+...+.. ..|.|++|.++ + -+++|.++|.|.||+..+.+..+..                 
T Consensus       238 --------------~~~fek~ek-k~Vl~v~F~en-g-dviTgDS~G~i~Iw~~~~~~~~k~~-----------------  283 (626)
T KOG2106|consen  238 --------------QGIFEKREK-KFVLCVTFLEN-G-DVITGDSGGNILIWSKGTNRISKQV-----------------  283 (626)
T ss_pred             --------------eeccccccc-eEEEEEEEcCC-C-CEEeecCCceEEEEeCCCceEEeEe-----------------
Confidence                          011112222 58999999998 4 5899999999999999765432221                 


Q ss_pred             cccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCccee--eecCCCCceeeeccCCCCccCCCCCCccCCCc
Q 004745          241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR--YTVGDASKIMSFTPTLNGLELQPPIHDFLQTN  318 (732)
Q Consensus       241 ~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  318 (732)
                         ..|.+ .|.+++...+|. |++|+.|..|..||-.- +.....  -..-..++.+                +--..+
T Consensus       284 ---~aH~g-gv~~L~~lr~Gt-llSGgKDRki~~Wd~~y-~k~r~~elPe~~G~iRtv----------------~e~~~d  341 (626)
T KOG2106|consen  284 ---HAHDG-GVFSLCMLRDGT-LLSGGKDRKIILWDDNY-RKLRETELPEQFGPIRTV----------------AEGKGD  341 (626)
T ss_pred             ---eecCC-ceEEEEEecCcc-EeecCccceEEeccccc-cccccccCchhcCCeeEE----------------ecCCCc
Confidence               34555 499999999997 55599999999999322 211111  0011111111                100000


Q ss_pred             cccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHh
Q 004745          319 IRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRD  398 (732)
Q Consensus       319 ~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  398 (732)
                       .+    .+..-+.+.-     -.++++-         ....++|.+.                    +|          
T Consensus       342 -i~----vGTtrN~iL~-----Gt~~~~f---------~~~v~gh~de--------------------lw----------  372 (626)
T KOG2106|consen  342 -IL----VGTTRNFILQ-----GTLENGF---------TLTVQGHGDE--------------------LW----------  372 (626)
T ss_pred             -EE----EeeccceEEE-----eeecCCc---------eEEEEecccc--------------------ee----------
Confidence             11    1111111110     0111000         1111222111                    22          


Q ss_pred             HHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 004745          399 CYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPR  478 (732)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~  478 (732)
                                                           ..+..|+           ...+++++.|+.+.+|+..+     
T Consensus       373 -------------------------------------gla~hps-----------~~q~~T~gqdk~v~lW~~~k-----  399 (626)
T KOG2106|consen  373 -------------------------------------GLATHPS-----------KNQLLTCGQDKHVRLWNDHK-----  399 (626)
T ss_pred             -------------------------------------eEEcCCC-----------hhheeeccCcceEEEccCCc-----
Confidence                                                 2344555           67788999999999997222     


Q ss_pred             CCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCCccccccC
Q 004745          479 TGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDA  558 (732)
Q Consensus       479 ~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  558 (732)
                         +. .+..+..+..+.+|.|.|                   .++.|...+.--+.+.+.....+++....++.+++|+
T Consensus       400 ---~~-wt~~~~d~~~~~~fhpsg-------------------~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ys  456 (626)
T KOG2106|consen  400 ---LE-WTKIIEDPAECADFHPSG-------------------VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYS  456 (626)
T ss_pred             ---ee-EEEEecCceeEeeccCcc-------------------eEEEeeccceEEEEecccceeEEEEecCCceEEEEEc
Confidence               11 112222222256666666                   4555655555555555556667777778899999999


Q ss_pred             CCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcc----------
Q 004745          559 NGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTG----------  628 (732)
Q Consensus       559 ~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg----------  628 (732)
                      |||.+||.++.++-..+|.....+....+..-|..  ..|..+. ||+|++||.+-|-|-.|-.|.....          
T Consensus       457 p~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLD-wS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvk  533 (626)
T KOG2106|consen  457 PDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLD-WSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVK  533 (626)
T ss_pred             CCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEee-ecCCCceEEeccCceEEEEEccccCcccceeccee
Confidence            99999999988877777877665555555544443  3344555 5999999999999999999942211          


Q ss_pred             -----------------------------------------------------cEEEEEecCcccEEEEeecCCCCeEEE
Q 004745          629 -----------------------------------------------------RLIKMLLGDEAVVNCVQCHPFDCVVAT  655 (732)
Q Consensus       629 -----------------------------------------------------~~~~~l~gH~~~V~~v~fsp~~~~l~S  655 (732)
                                                                           ..-..+.||++.|++|+|.-+.+.|.|
T Consensus       534 W~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~  613 (626)
T KOG2106|consen  534 WATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLIS  613 (626)
T ss_pred             eeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEe
Confidence                                                                 022233578999999999988888888


Q ss_pred             ecCCCcEEEEcC
Q 004745          656 SGIDNTIKIWTP  667 (732)
Q Consensus       656 ~s~D~~i~vW~~  667 (732)
                      .+.|..|..|++
T Consensus       614 tg~D~Si~qW~l  625 (626)
T KOG2106|consen  614 TGKDTSIMQWRL  625 (626)
T ss_pred             cCCCceEEEEEe
Confidence            889999999975

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.2e-28  Score=251.97  Aligned_cols=161  Identities=12%  Similarity=0.173  Sum_probs=142.2

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  138 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  138 (732)
                      ......|.+++|+|..  ..++++-..|.|++||.+..          .++..|.+|.++|..+.|+|.. .+|++|+.|
T Consensus         6 EskSsRvKglsFHP~r--PwILtslHsG~IQlWDYRM~----------tli~rFdeHdGpVRgv~FH~~q-plFVSGGDD   72 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKR--PWILTSLHSGVIQLWDYRMG----------TLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDD   72 (1202)
T ss_pred             hcccccccceecCCCC--CEEEEeecCceeeeehhhhh----------hHHhhhhccCCccceeeecCCC-CeEEecCCc
Confidence            4566789999999995  89999999999999999964          3488999999999999999955 899999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      -.|++|+..+.+                         .+....+|...|..+.|++. -.+|++++.|.+||||+..+.+
T Consensus        73 ykIkVWnYk~rr-------------------------clftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~  126 (1202)
T KOG0292|consen   73 YKIKVWNYKTRR-------------------------CLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRK  126 (1202)
T ss_pred             cEEEEEecccce-------------------------ehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEeccCCc
Confidence            999999998876                         34566788889999999998 6799999999999999999986


Q ss_pred             CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .+..+                    .||.. .|.|..|+|....++++|-|.+|||||+..
T Consensus       127 ~iavl--------------------tGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen  127 CIAVL--------------------TGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             eEEEE--------------------ecCce-EEEeeccCCccceEEEecccceEEEEeecc
Confidence            65544                    67766 599999999999999999999999999987

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=4.7e-27  Score=269.10  Aligned_cols=188  Identities=15%  Similarity=0.242  Sum_probs=142.7

Q ss_pred             CCcEEEEeCCCCeeEEEEc----cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccc
Q 004745           40 DTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH  115 (732)
Q Consensus        40 dg~i~vWd~~~~~~~~~~~----~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h  115 (732)
                      +|.+++|+..+......+.    ..|.+.|.+++|+|+  |++|++|+.|+.|+||++........  ....+...+. +
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~d--g~~latgg~D~~I~iwd~~~~~~~~~--~~~~~~~~~~-~  531 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRD--GEFFATAGVNKKIKIFECESIIKDGR--DIHYPVVELA-S  531 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCC--CCEEEEEeCCCEEEEEECCccccccc--ccccceEEec-c
Confidence            6778999988766554432    248999999999999  59999999999999999864211000  0001233333 3


Q ss_pred             cCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004745          116 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  195 (732)
Q Consensus       116 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  195 (732)
                      ...+.+++|+|..+.+|++++.||.|++||+.+++.                         +....+|...|++++|+|.
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-------------------------~~~~~~H~~~V~~l~~~p~  586 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-------------------------VTEMKEHEKRVWSIDYSSA  586 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE-------------------------EEEecCCCCCEEEEEEcCC
Confidence            467999999987678999999999999999987652                         2223457779999999985


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc-CCCCEEEEEecCCeEEE
Q 004745          196 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYL  274 (732)
Q Consensus       196 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-p~g~~l~~~~~dg~v~i  274 (732)
                      ++.+|++|+.|++|++||+++...+..+                    ..+ . .+.++.|+ ++|.+|++|+.||.|++
T Consensus       587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~--------------------~~~-~-~v~~v~~~~~~g~~latgs~dg~I~i  644 (793)
T PLN00181        587 DPTLLASGSDDGSVKLWSINQGVSIGTI--------------------KTK-A-NICCVQFPSESGRSLAFGSADHKVYY  644 (793)
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEEEEE--------------------ecC-C-CeEEEEEeCCCCCEEEEEeCCCeEEE
Confidence            5889999999999999999876544332                    112 1 48899995 57999999999999999


Q ss_pred             EECCC
Q 004745          275 MDVNH  279 (732)
Q Consensus       275 wd~~~  279 (732)
                      ||+++
T Consensus       645 wD~~~  649 (793)
T PLN00181        645 YDLRN  649 (793)
T ss_pred             EECCC
Confidence            99876

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=1.6e-27  Score=231.75  Aligned_cols=230  Identities=16%  Similarity=0.235  Sum_probs=170.7

Q ss_pred             EeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe----eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745           13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~----~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      -.|++|+..|.++++.|.|..|++|+.|.+|+.||+..+.    .-+.+.......|.++.|++.  |..|+..+.....
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T--g~~iLvvsg~aqa  238 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT--GDQILVVSGSAQA  238 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC--CCeEEEEecCcce
Confidence            4578999999999999999999999999999999987543    223333345567999999998  4777777778889


Q ss_pred             EEEEcCCCCCCCC--CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           89 RLFNLSRFSGRGL--DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        89 ~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      +|+|-........  ....+.-+..-+||...+++.+|+|.+...|+|++.||++|+||+...+...           .+
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~-----------qV  307 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL-----------QV  307 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe-----------eE
Confidence            9998764221000  0111122345678999999999999998999999999999999998876321           11


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                      +...        ...+....++.|+|+++ +.+||+|+.||.|.+|+......-..                 +.....|
T Consensus       308 ik~k--------~~~g~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~-----------------~~vk~AH  361 (641)
T KOG0772|consen  308 IKTK--------PAGGKRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPV-----------------MKVKDAH  361 (641)
T ss_pred             Eeec--------cCCCcccCceeeecCCC-cchhhhcccCCceeeeecCCcccccc-----------------eEeeecc
Confidence            1111        11134558899999999 78999999999999999865421111                 1111233


Q ss_pred             cc-ccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          247 SS-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       247 ~~-~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      .. ..|++|.||++|++|++=+.|+++++||++..+
T Consensus       362 ~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  362 LPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             CCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            22 249999999999999999999999999999843

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=1.1e-26  Score=235.00  Aligned_cols=163  Identities=25%  Similarity=0.392  Sum_probs=132.2

Q ss_pred             EEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEE
Q 004745           56 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA  135 (732)
Q Consensus        56 ~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  135 (732)
                      .+ .+|..+|.+++|+|+  +++|++++.||.|++|++....          ....+..|...+..+.|+|++ ++++++
T Consensus         4 ~~-~~h~~~i~~~~~~~~--~~~l~~~~~~g~i~i~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~-~~l~~~   69 (289)
T cd00200           4 TL-KGHTGGVTCVAFSPD--GKLLATGSGDGTIKVWDLETGE----------LLRTLKGHTGPVRDVAASADG-TYLASG   69 (289)
T ss_pred             Hh-cccCCCEEEEEEcCC--CCEEEEeecCcEEEEEEeeCCC----------cEEEEecCCcceeEEEECCCC-CEEEEE
Confidence            44 589999999999999  5899999999999999998632          256777899999999999955 889999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004745          136 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  215 (732)
Q Consensus       136 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~  215 (732)
                      +.||.|++||+.+++..                         .....+...+.++.|+++ +.++++++.|+.|++||++
T Consensus        70 ~~~~~i~i~~~~~~~~~-------------------------~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~  123 (289)
T cd00200          70 SSDKTIRLWDLETGECV-------------------------RTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVE  123 (289)
T ss_pred             cCCCeEEEEEcCcccce-------------------------EEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECC
Confidence            99999999999875421                         111234557999999998 7788888889999999998


Q ss_pred             CCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          216 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +.+....+                    ..|.. .+.+++|+|+++++++++.++.|++||+.+
T Consensus       124 ~~~~~~~~--------------------~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~  166 (289)
T cd00200         124 TGKCLTTL--------------------RGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRT  166 (289)
T ss_pred             CcEEEEEe--------------------ccCCC-cEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence            66544332                    22333 599999999999888888899999999875

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1e-25  Score=237.68  Aligned_cols=211  Identities=15%  Similarity=0.129  Sum_probs=162.7

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEE-------------EEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-------------SIETGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~-------------~~~~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      |-..|+....++|+..+++++.+..+..|+...+..+.             .+ .+|.+.|++++|+|.. +++|++|+.
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d-~~~LaSgS~   96 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFD-PQKLFTASE   96 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCC-CCEEEEEeC
Confidence            45667777788887778888888888888865443221             23 6899999999999932 489999999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      |++|++||+......   .....++..+.+|...|.+++|+|.+.++|++++.|+.|++||+.+++..            
T Consensus        97 DgtIkIWdi~~~~~~---~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~------------  161 (493)
T PTZ00421         97 DGTIMGWGIPEEGLT---QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV------------  161 (493)
T ss_pred             CCEEEEEecCCCccc---cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE------------
Confidence            999999999753211   01124567889999999999999976689999999999999999876521            


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                                   .....|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+                    .
T Consensus       162 -------------~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl--------------------~  207 (493)
T PTZ00421        162 -------------EVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSV--------------------E  207 (493)
T ss_pred             -------------EEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEEEEE--------------------e
Confidence                         122346668999999998 789999999999999999987654433                    3


Q ss_pred             CCccccEEEEEEcCCCCEEEEEe----cCCeEEEEECCC
Q 004745          245 GRSSLHLTHVTFSPNGEEVLLSY----SGEHVYLMDVNH  279 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g~~l~~~~----~dg~v~iwd~~~  279 (732)
                      +|.+..+..+.|.+++..|++++    .|+.|++||+++
T Consensus       208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            44443355778999888777664    378999999876

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.9e-26  Score=223.82  Aligned_cols=201  Identities=17%  Similarity=0.280  Sum_probs=165.2

Q ss_pred             cCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           18 HQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        18 h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      -.+.|.+++|+|... -+|+++. -.+.||+..+...+.++ ...+..|.++.|..+  |.+|+.|...|.|+|||..+.
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~D--G~LlaaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRSD--GRLLAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-HhhccceeEEEeecC--CeEEEccCCcCcEEEeccccH
Confidence            357899999999543 3554443 57999999988888777 577888999999999  699999999999999996541


Q ss_pred             CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004745           97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  176 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (732)
                                ..+..+.+|..+|..+.|+|++...|++|+.|+.+++||+.+..                         .
T Consensus       101 ----------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-------------------------v  145 (487)
T KOG0310|consen  101 ----------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-------------------------V  145 (487)
T ss_pred             ----------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-------------------------E
Confidence                      23788999999999999999998999999999999999998764                         1


Q ss_pred             ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCCccccEEEEE
Q 004745          177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  255 (732)
Q Consensus       177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  255 (732)
                      .....+|...|.+.+|+|.+++++++|+.||.||+||++... .+.++                     .| +.+|-++.
T Consensus       146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el---------------------nh-g~pVe~vl  203 (487)
T KOG0310|consen  146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL---------------------NH-GCPVESVL  203 (487)
T ss_pred             EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe---------------------cC-CCceeeEE
Confidence            234567888999999999988899999999999999999762 22221                     22 33799999


Q ss_pred             EcCCCCEEEEEecCCeEEEEECCCC
Q 004745          256 FSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       256 ~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      +-|.|..+++++. ..|+|||+.++
T Consensus       204 ~lpsgs~iasAgG-n~vkVWDl~~G  227 (487)
T KOG0310|consen  204 ALPSGSLIASAGG-NSVKVWDLTTG  227 (487)
T ss_pred             EcCCCCEEEEcCC-CeEEEEEecCC
Confidence            9999998888765 49999999874

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.4e-26  Score=206.47  Aligned_cols=257  Identities=16%  Similarity=0.215  Sum_probs=200.1

Q ss_pred             cccEee-eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745           10 SQEREL-EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus        10 ~~~~~l-~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~--~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      .++..| .+|+..|+.++|+|.|++||+||.|.++.||.-..  .+++..+ .||+..|.|++|+++  |++||+|+.|.
T Consensus        51 ~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~s--G~~LATCSRDK  127 (312)
T KOG0645|consen   51 TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL-EGHENEVKCVAWSAS--GNYLATCSRDK  127 (312)
T ss_pred             EEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee-eccccceeEEEEcCC--CCEEEEeeCCC
Confidence            344444 36999999999999999999999999999997653  4688888 899999999999999  69999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      .|-||.+....       .+++...+++|...|..+.|+|.. .+|++++.|.+|++|+-....                
T Consensus       128 SVWiWe~dedd-------Efec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dd----------------  183 (312)
T KOG0645|consen  128 SVWIWEIDEDD-------EFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDD----------------  183 (312)
T ss_pred             eEEEEEecCCC-------cEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCC----------------
Confidence            99999998422       247789999999999999999954 899999999999999876322                


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                            ....+....+|...|.+++|++. |..|++++.|++|+||-..+.-+                        ..|
T Consensus       184 ------dW~c~~tl~g~~~TVW~~~F~~~-G~rl~s~sdD~tv~Iw~~~~~~~------------------------~~~  232 (312)
T KOG0645|consen  184 ------DWECVQTLDGHENTVWSLAFDNI-GSRLVSCSDDGTVSIWRLYTDLS------------------------GMH  232 (312)
T ss_pred             ------CeeEEEEecCccceEEEEEecCC-CceEEEecCCcceEeeeeccCcc------------------------hhc
Confidence                  11133445567779999999999 78999999999999998653210                        113


Q ss_pred             ccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCC-cccccccc
Q 004745          247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQT-NIRVRGEV  325 (732)
Q Consensus       247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~  325 (732)
                      .. +++.+.|. +| .|++++.|+.|++|.-.......         ..--+......|+..+.++++.|. ...++   
T Consensus       233 sr-~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p---------~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~---  297 (312)
T KOG0645|consen  233 SR-ALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEP---------SWNLLAKKEGAHEVDVNSVQWNPKVSNRLA---  297 (312)
T ss_pred             cc-ceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCc---------hHHHHHhhhcccccccceEEEcCCCCCcee---
Confidence            23 59999998 44 69999999999999766421110         000011133456667888888884 56677   


Q ss_pred             ccCcchhhHHHHHHHhhhh
Q 004745          326 ATGLGKCRMLVEIARNSLE  344 (732)
Q Consensus       326 ~~~~d~~~~l~~~~~~~~~  344 (732)
                      +++.|+.+++     |.++
T Consensus       298 s~~DDG~v~~-----W~l~  311 (312)
T KOG0645|consen  298 SGGDDGIVNF-----WELE  311 (312)
T ss_pred             ecCCCceEEE-----EEec
Confidence            9999999998     7654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=2.3e-26  Score=244.50  Aligned_cols=209  Identities=16%  Similarity=0.222  Sum_probs=163.2

Q ss_pred             eecc-CCceeEEEEcCCCCEEEEEe--CCCcEEEEeCCC------------CeeEEEEccCCCcCeEEEEEecCCCCCEE
Q 004745           15 LEGH-QGCVNAISWNSKGSLLISGS--DDTHINVWSYSS------------RKLLHSIETGHSANVFCTKFVPETSDELV   79 (732)
Q Consensus        15 l~~h-~~~V~~l~~s~dg~~lasg~--~dg~i~vWd~~~------------~~~~~~~~~~h~~~V~~~~~s~~~~g~~l   79 (732)
                      +-+| ...|.+++.+|||..+|||+  .|+.++||+...            .+.+... ..|.+.|+|+.|+|+  |.+|
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~d--G~~l   84 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPD--GSYL   84 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCC--CCeE
Confidence            3344 57799999999999999999  899999998641            2344455 689999999999999  6999


Q ss_pred             EEEECCCcEEEEEcCC-CC-------CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004745           80 VSGAGDAEVRLFNLSR-FS-------GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  151 (732)
Q Consensus        80 ~s~~~dg~i~vwd~~~-~~-------~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~  151 (732)
                      |+|+.|+.|.||+... +.       +.......++.+..+.+|...|..+.|+|+ +.++++++.|++|.+|+..+.+ 
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s~DnsViiwn~~tF~-  162 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVSLDNSVIIWNAKTFE-  162 (942)
T ss_pred             eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-ccEEEEecccceEEEEccccce-
Confidence            9999999999999873 10       112233445678899999999999999994 5999999999999999998875 


Q ss_pred             CCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCC
Q 004745          152 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  231 (732)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~  231 (732)
                                              .+....+|...|..+.|+|- |++|++-+.|++|+||+..+....+.+..+..  .
T Consensus       163 ------------------------~~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~--~  215 (942)
T KOG0973|consen  163 ------------------------LLKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPFE--E  215 (942)
T ss_pred             ------------------------eeeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccchh--h
Confidence                                    23445678889999999999 89999999999999999766443333221100  0


Q ss_pred             ccccccccccccCCCccccEEEEEEcCCCCEEEEEec
Q 004745          232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  268 (732)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~  268 (732)
                                  . .....+..+.|+|||++|++...
T Consensus       216 ------------~-~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  216 ------------S-PLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             ------------C-CCcceeeecccCCCcCeecchhh
Confidence                        0 11114888999999999998754

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.1e-26  Score=220.14  Aligned_cols=165  Identities=15%  Similarity=0.195  Sum_probs=136.4

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  138 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  138 (732)
                      ..|++.|.-+.||++  |++|||++.|.+..+|.+..-..       .+..+++.+|..+|..+.|+||+ +++++|+.|
T Consensus       221 ~~htdEVWfl~FS~n--GkyLAsaSkD~Taiiw~v~~d~~-------~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~  290 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSHN--GKYLASASKDSTAIIWIVVYDVH-------FKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFD  290 (519)
T ss_pred             hhCCCcEEEEEEcCC--CeeEeeccCCceEEEEEEecCcc-------eeeeeeeecccCceEEEEECCCC-CeEEecCch
Confidence            689999999999999  69999999999999999874221       35578999999999999999966 899999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      ..+.+||+.++....                        ....++...+.+++|.|| +..+++|+.|+++..||++.. 
T Consensus       291 e~~~lwDv~tgd~~~------------------------~y~~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDgn-  344 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRH------------------------LYPSGLGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDGN-  344 (519)
T ss_pred             HheeeccCCcchhhh------------------------hcccCcCCCcceeEEccC-CceeEecCCCCcEEEecCCcc-
Confidence            999999999987431                        111224568999999999 789999999999999999753 


Q ss_pred             CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .+..+                    .+.....|.++++.+||+++++.+.|..|++++..+
T Consensus       345 ~~~~W--------------------~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~  385 (519)
T KOG0293|consen  345 ILGNW--------------------EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA  385 (519)
T ss_pred             hhhcc--------------------cccccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence            23222                    233333599999999999999999999999998766

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.2e-24  Score=187.27  Aligned_cols=220  Identities=18%  Similarity=0.302  Sum_probs=159.5

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC------CC--------eeEEEEccCCCcCeEEEEEecCCC
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------SR--------KLLHSIETGHSANVFCTKFVPETS   75 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~------~~--------~~~~~~~~~h~~~V~~~~~s~~~~   75 (732)
                      +.+.+|. ....|.+++|+|.|.+.|+|+...+.||-...      .+        ..+..-.+.|.+.|+|.+|+|.  
T Consensus        24 ~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~--  100 (350)
T KOG0641|consen   24 EAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC--  100 (350)
T ss_pred             EEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc--
Confidence            3445554 57889999999999999999999999987432      11        1222222578999999999999  


Q ss_pred             CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC---CCcEEEEEe-CCCcEEEEECCCCCC
Q 004745           76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSAS-EDGTLRQHDFRQGSS  151 (732)
Q Consensus        76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~~l~s~s-~dg~i~vwd~~~~~~  151 (732)
                      |++|++|+.|.+|++-.+.....+..     -+-..+.-|.+.|..++|..+   ++.+|++++ .|..|++-|..+++ 
T Consensus       101 geliatgsndk~ik~l~fn~dt~~~~-----g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-  174 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCNAT-----GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-  174 (350)
T ss_pred             cCeEEecCCCceEEEEeccccccccc-----CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-
Confidence            69999999999999987764332221     234567789999999999642   446777765 46677777877776 


Q ss_pred             CCCCCCCCcccceEEeeccCCccccccCCCCCccceEEE-EecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCC
Q 004745          152 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC-DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  230 (732)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~  230 (732)
                                              .+....+|.+.|.++ .|+   +-++++|+.|.+||+||++-...+          
T Consensus       175 ------------------------~~~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v----------  217 (350)
T KOG0641|consen  175 ------------------------GFHALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCV----------  217 (350)
T ss_pred             ------------------------cceeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeecccee----------
Confidence                                    233445566666655 344   679999999999999999865433          


Q ss_pred             CccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          231 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                         +..... ....|-....|.+++..|.|++|++|-.|....+||++.
T Consensus       218 ---~~l~~~-~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg  262 (350)
T KOG0641|consen  218 ---NTLDND-FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG  262 (350)
T ss_pred             ---eeccCc-ccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence               322211 111333344699999999999999999999999999877

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.4e-26  Score=201.08  Aligned_cols=235  Identities=24%  Similarity=0.306  Sum_probs=197.4

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      +..+++++.||...|..++.+.|...+++|+.|+.|.+||+.+|+.++++ .+|.+.|+.++|+.++  ..+++|+.|.+
T Consensus        48 rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNees--SVv~SgsfD~s  124 (307)
T KOG0316|consen   48 RGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEES--SVVASGSFDSS  124 (307)
T ss_pred             ccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCcc--eEEEeccccce
Confidence            56688999999999999999999999999999999999999999999999 8999999999999985  89999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      +++||.+..+        .+|++.+....+.|.++....   +.|++|+.||++|.||++.+...               
T Consensus       125 ~r~wDCRS~s--------~ePiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~---------------  178 (307)
T KOG0316|consen  125 VRLWDCRSRS--------FEPIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLS---------------  178 (307)
T ss_pred             eEEEEcccCC--------CCccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceee---------------
Confidence            9999999654        367899999999999999853   78999999999999999998732               


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                                ..  ....+|++++|+++ ++..++++.|+++|+.|-.+++.+..+                    .||.
T Consensus       179 ----------sD--y~g~pit~vs~s~d-~nc~La~~l~stlrLlDk~tGklL~sY--------------------kGhk  225 (307)
T KOG0316|consen  179 ----------SD--YFGHPITSVSFSKD-GNCSLASSLDSTLRLLDKETGKLLKSY--------------------KGHK  225 (307)
T ss_pred             ----------hh--hcCCcceeEEecCC-CCEEEEeeccceeeecccchhHHHHHh--------------------cccc
Confidence                      11  12238999999999 889999999999999999999877665                    4554


Q ss_pred             cc-cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCC-CceeeeccCCCC
Q 004745          248 SL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA-SKIMSFTPTLNG  304 (732)
Q Consensus       248 ~~-~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  304 (732)
                      +. .-...++.....++++|+.||.|++||+.+......+..++.. +..++++|.+..
T Consensus       226 n~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~  284 (307)
T KOG0316|consen  226 NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD  284 (307)
T ss_pred             cceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence            32 1345567777788999999999999999997665555544444 556667776544

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.7e-25  Score=235.96  Aligned_cols=230  Identities=17%  Similarity=0.274  Sum_probs=172.2

Q ss_pred             eeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe-------eEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745           14 ELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus        14 ~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~-------~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      .+.||.++|++++|+| ++++||+|+.|++|+|||+.++.       .+..+ .+|...|.+++|+|.. +++|++++.|
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~-~~iLaSgs~D  147 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSA-MNVLASAGAD  147 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCC-CCEEEEEeCC
Confidence            5789999999999999 88999999999999999997652       45566 7999999999999984 4799999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      ++|+|||+.++          ..+..+.+|...|.+++|+|+ +.+|++++.|+.|++||+++++..             
T Consensus       148 gtVrIWDl~tg----------~~~~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v-------------  203 (493)
T PTZ00421        148 MVVNVWDVERG----------KAVEVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIV-------------  203 (493)
T ss_pred             CEEEEEECCCC----------eEEEEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEE-------------
Confidence            99999999864          236778889999999999995 489999999999999999987621             


Q ss_pred             EeeccCCccccccCCCCCcc-ceEEEEecCCCCCEEEEEe----CCCeEEEEECCCCCCCcccccCCCCCCccccccccc
Q 004745          166 LLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVGG----SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  240 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~tg~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (732)
                                  .....|.. .+..+.|.++ +..+++++    .|+.|++||+++......            ..    
T Consensus       204 ------------~tl~~H~~~~~~~~~w~~~-~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~------------~~----  254 (493)
T PTZ00421        204 ------------SSVEAHASAKSQRCLWAKR-KDLIITLGCSKSQQRQIMLWDTRKMASPYS------------TV----  254 (493)
T ss_pred             ------------EEEecCCCCcceEEEEcCC-CCeEEEEecCCCCCCeEEEEeCCCCCCcee------------Ee----
Confidence                        01111222 2346678887 44565543    479999999986532110            00    


Q ss_pred             cccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCccee-eecCCCCceeeeccC
Q 004745          241 LSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMR-YTVGDASKIMSFTPT  301 (732)
Q Consensus       241 ~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~  301 (732)
                         ..+....+....|++++++|++++. |+.|++||+.++...... +....+.+.+++.|.
T Consensus       255 ---~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        255 ---DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             ---ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence               1111223666789999999998884 999999999986533221 223445566666664

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=2.3e-25  Score=212.62  Aligned_cols=201  Identities=19%  Similarity=0.317  Sum_probs=174.2

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004745           20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR   99 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~   99 (732)
                      ..|+++...|....++||+.|.++.++|...++.+..+ .||...|+.+.|+|+.  ..+++++.|..|+||.....+. 
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~-  295 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSE-  295 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccch--hheeecCCcceEEeeccccccC-
Confidence            57888888888789999999999999999999999998 8999999999999995  8899999999999999886542 


Q ss_pred             CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004745          100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  179 (732)
Q Consensus       100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (732)
                               ......|..+|+.+..+|. +.||++++.|++..+.|++++..+                       .+..
T Consensus       296 ---------~~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g~~l-----------------------t~vs  342 (506)
T KOG0289|consen  296 ---------PTSSRPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSGSQL-----------------------TVVS  342 (506)
T ss_pred             ---------ccccccccccceeeeeccC-CcEEEEecCCceEEEEEccCCcEE-----------------------EEEe
Confidence                     4567789999999999995 499999999999999999998743                       1111


Q ss_pred             CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC
Q 004745          180 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  259 (732)
Q Consensus       180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~  259 (732)
                      .......+++.+|+|| |.+|.+|..|+.|+|||+.+......+                    .+|.+ +|..++|+.+
T Consensus       343 ~~~s~v~~ts~~fHpD-gLifgtgt~d~~vkiwdlks~~~~a~F--------------------pght~-~vk~i~FsEN  400 (506)
T KOG0289|consen  343 DETSDVEYTSAAFHPD-GLIFGTGTPDGVVKIWDLKSQTNVAKF--------------------PGHTG-PVKAISFSEN  400 (506)
T ss_pred             eccccceeEEeeEcCC-ceEEeccCCCceEEEEEcCCccccccC--------------------CCCCC-ceeEEEeccC
Confidence            1123347899999999 889999999999999999987665555                    66666 7999999999


Q ss_pred             CCEEEEEecCCeEEEEECCC
Q 004745          260 GEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       260 g~~l~~~~~dg~v~iwd~~~  279 (732)
                      |-+|++++.|+.|++||++.
T Consensus       401 GY~Lat~add~~V~lwDLRK  420 (506)
T KOG0289|consen  401 GYWLATAADDGSVKLWDLRK  420 (506)
T ss_pred             ceEEEEEecCCeEEEEEehh
Confidence            99999999999999999988

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7.7e-26  Score=207.06  Aligned_cols=222  Identities=23%  Similarity=0.309  Sum_probs=184.4

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      .+.+++.|.||.++|..++.......+.+++.|.+.+||.++++.|+.++ .+|.+.|++++|++.  +.++++++.|++
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s--~~L~lTaSGD~t  213 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNS--GLLLLTASGDET  213 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEeccc--cceEEEccCCcc
Confidence            45678889999999999999888889999999999999999999999999 899999999999998  599999999999


Q ss_pred             EEEEEcC----CCCCC------------CC--------------CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC
Q 004745           88 VRLFNLS----RFSGR------------GL--------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE  137 (732)
Q Consensus        88 i~vwd~~----~~~~~------------~~--------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  137 (732)
                      ..||...    .++..            +.              ...-..|+..+.+|...|.+..|.. +++.+++++.
T Consensus       214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSW  292 (481)
T KOG0300|consen  214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASW  292 (481)
T ss_pred             hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeec
Confidence            9999721    11100            00              0011246778899999999999998 6689999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004745          138 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  217 (732)
Q Consensus       138 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~  217 (732)
                      |.+..+||+++++.                         +..+.+|...++.++-+|. .+++++.+.|.+.|+||++..
T Consensus       293 DRTAnlwDVEtge~-------------------------v~~LtGHd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFRea  346 (481)
T KOG0300|consen  293 DRTANLWDVETGEV-------------------------VNILTGHDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFREA  346 (481)
T ss_pred             cccceeeeeccCce-------------------------eccccCcchhccccccCCc-ceEEEEeccCceeEeccchhh
Confidence            99999999999983                         4445677778899999998 679999999999999999843


Q ss_pred             CCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          218 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                        +          +.+..|       +||.. .|+++.|..+.+ +++|+.|.+|+|||+++.
T Consensus       347 --I----------~sV~VF-------QGHtd-tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNM  388 (481)
T KOG0300|consen  347 --I----------QSVAVF-------QGHTD-TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNM  388 (481)
T ss_pred             --c----------ceeeee-------ccccc-ceeEEEEecCCc-eeecCCCceEEEeeeccc
Confidence              2          122333       78887 599999998765 899999999999999983

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4e-25  Score=223.74  Aligned_cols=192  Identities=18%  Similarity=0.283  Sum_probs=156.4

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCC
Q 004745           25 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  104 (732)
Q Consensus        25 l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~  104 (732)
                      +.|+ ..+.||+|.. ..|++|+..+++..... ..+...|+++.|+++  |.+|+.|..+|.|.|||.....       
T Consensus       183 ldWs-s~n~laValg-~~vylW~~~s~~v~~l~-~~~~~~vtSv~ws~~--G~~LavG~~~g~v~iwD~~~~k-------  250 (484)
T KOG0305|consen  183 LDWS-SANVLAVALG-QSVYLWSASSGSVTELC-SFGEELVTSVKWSPD--GSHLAVGTSDGTVQIWDVKEQK-------  250 (484)
T ss_pred             hhcc-cCCeEEEEec-ceEEEEecCCCceEEeE-ecCCCceEEEEECCC--CCEEEEeecCCeEEEEehhhcc-------
Confidence            5677 3456777654 57999999998866555 445899999999999  6999999999999999998643       


Q ss_pred             CCCCceeecc-ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC
Q 004745          105 AITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ  183 (732)
Q Consensus       105 ~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (732)
                         .+..+.+ |...|-+++|.   ...+.+|+.|+.|.++|++..+...                        ....+|
T Consensus       251 ---~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~------------------------~~~~~H  300 (484)
T KOG0305|consen  251 ---KTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVV------------------------STLQGH  300 (484)
T ss_pred             ---ccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhh------------------------hhhhcc
Confidence               2567777 99999999997   3789999999999999999887431                        124567


Q ss_pred             ccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCE
Q 004745          184 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEE  262 (732)
Q Consensus       184 ~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~  262 (732)
                      ...|..++|+++ +.+||+|+.|+.+.|||.....++..+                    ..|.. .|..++|+| ....
T Consensus       301 ~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~p~~~~--------------------~~H~a-AVKA~awcP~q~~l  358 (484)
T KOG0305|consen  301 RQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPEPKFTF--------------------TEHTA-AVKALAWCPWQSGL  358 (484)
T ss_pred             cceeeeeEECCC-CCeeccCCCccceEeccCCCccccEEE--------------------eccce-eeeEeeeCCCccCc
Confidence            779999999999 899999999999999999766555443                    45666 599999999 5567


Q ss_pred             EEEEec--CCeEEEEECCCC
Q 004745          263 VLLSYS--GEHVYLMDVNHA  280 (732)
Q Consensus       263 l~~~~~--dg~v~iwd~~~~  280 (732)
                      ||+|+.  |+.|++||..++
T Consensus       359 LAsGGGs~D~~i~fwn~~~g  378 (484)
T KOG0305|consen  359 LATGGGSADRCIKFWNTNTG  378 (484)
T ss_pred             eEEcCCCcccEEEEEEcCCC
Confidence            888865  999999999874

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=3.8e-25  Score=201.80  Aligned_cols=202  Identities=16%  Similarity=0.219  Sum_probs=158.3

Q ss_pred             ccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004745           17 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS   94 (732)
Q Consensus        17 ~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~-~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~   94 (732)
                      ...+.|.+|+||| ...+|+.||.|++||+|+++. |..+.+-...|.++|.+++|+.+  |..+++|+.|+.+++||+.
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC--CceEEeeccCCceEEEEcc
Confidence            4578999999999 556777899999999999987 45555554689999999999999  5999999999999999999


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCc--EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH--VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                      +++           +.....|..+|..+.|-+ +..  .|+|||.|++|+.||++...++..            +     
T Consensus       103 S~Q-----------~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t------------~-----  153 (347)
T KOG0647|consen  103 SGQ-----------VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVAT------------L-----  153 (347)
T ss_pred             CCC-----------eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeee------------e-----
Confidence            753           677888999999999988 434  899999999999999998764310            0     


Q ss_pred             ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004745          173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  252 (732)
Q Consensus       173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (732)
                            .   -...++++..-   ..+++++..++.|.+|++++.....+..                   .......+.
T Consensus       154 ------~---LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~-------------------~SpLk~Q~R  202 (347)
T KOG0647|consen  154 ------Q---LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRI-------------------ESPLKWQTR  202 (347)
T ss_pred             ------e---ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhh-------------------cCcccceee
Confidence                  0   11255666554   3489999999999999997653221110                   001122588


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          253 HVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      +++..++....+.|+-+|.+.|..+..+
T Consensus       203 ~va~f~d~~~~alGsiEGrv~iq~id~~  230 (347)
T KOG0647|consen  203 CVACFQDKDGFALGSIEGRVAIQYIDDP  230 (347)
T ss_pred             EEEEEecCCceEeeeecceEEEEecCCC
Confidence            9999999888899999999999988873

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.94  E-value=2.4e-25  Score=222.45  Aligned_cols=234  Identities=20%  Similarity=0.262  Sum_probs=157.6

Q ss_pred             cCCceeE--EEEcC---CCCEEEEEeCCCcEEEEeCCCCee------EEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745           18 HQGCVNA--ISWNS---KGSLLISGSDDTHINVWSYSSRKL------LHSIETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus        18 h~~~V~~--l~~s~---dg~~lasg~~dg~i~vWd~~~~~~------~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      |.-++.-  ..|++   ....|+.+..||.|.++|....+.      ++.. ..|.++|..++|.|.  ...|++++.|.
T Consensus        46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapg--e~~lVsasGDs  122 (720)
T KOG0321|consen   46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPG--ESLLVSASGDS  122 (720)
T ss_pred             CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCC--ceeEEEccCCc
Confidence            4445544  66765   335899999999999999765432      2333 589999999999995  48999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      ++++||+.......        ...+.+|...|.+++|.|.++..|++|+.||.|.|||++-...-..     ......+
T Consensus       123 T~r~Wdvk~s~l~G--------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~-----e~~~~~~  189 (720)
T KOG0321|consen  123 TIRPWDVKTSRLVG--------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL-----EEFDNRI  189 (720)
T ss_pred             eeeeeeeccceeec--------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH-----HHHhhhh
Confidence            99999999754322        3458899999999999999999999999999999999986651100     0000111


Q ss_pred             eeccCCc-------cccccCCCCCcc----ceEEEEecCCCCCEEEEEeC-CCeEEEEECCCCCCCcccccCCCCCCccc
Q 004745          167 LDLRCGA-------KRSLADPPKQTL----SLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVN  234 (732)
Q Consensus       167 ~~~~~~~-------~~~~~~~~~~~~----~v~~i~~~~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  234 (732)
                      ++..++.       .+.......+..    .|+.+.| -| ...||+++. |+.|+|||++...........     -..
T Consensus       190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-kD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~-----~~~  262 (720)
T KOG0321|consen  190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-KD-ESTLASAGAADSTIKVWDLRKNYTAYRQEPR-----GSD  262 (720)
T ss_pred             hccccCCCCCCchhhccccccccccCceeeeeEEEEE-ec-cceeeeccCCCcceEEEeecccccccccCCC-----ccc
Confidence            1111110       001111112222    3444544 44 568888887 999999999976543322110     011


Q ss_pred             cccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          235 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .+   +.  .......+.++.....|.+|++.+.|+.|++||+.+
T Consensus       263 ~~---~t--~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  263 KY---PT--HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS  302 (720)
T ss_pred             Cc---cC--cccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence            11   01  011122388899999999999999999999999987

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.2e-24  Score=199.47  Aligned_cols=197  Identities=21%  Similarity=0.251  Sum_probs=158.6

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS   97 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~   97 (732)
                      ..+.|+.+.|+|.+..|+.++.||++++||+........+  .|+.++.+++|.++   ..+++|+.||.|+.+|+.++.
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADE---STIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCC---ceEEEeccCceEEEEEecCCc
Confidence            4789999999999999999999999999999988776666  69999999999997   789999999999999999754


Q ss_pred             CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004745           98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  177 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (732)
                                 ...+..|...|.+|.+.+ ....+++||.|++|++||.+.....                         
T Consensus        87 -----------~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~-------------------------  129 (323)
T KOG1036|consen   87 -----------EDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVV-------------------------  129 (323)
T ss_pred             -----------ceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccc-------------------------
Confidence                       355677999999999998 5578899999999999999864321                         


Q ss_pred             cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004745          178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  257 (732)
Q Consensus       178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  257 (732)
                       ........|.++...   ++.|++|+.|..|.+||+++.....+..                   ...-...+.++++-
T Consensus       130 -~~~d~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q~r-------------------eS~lkyqtR~v~~~  186 (323)
T KOG1036|consen  130 -GTFDQGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQRR-------------------ESSLKYQTRCVALV  186 (323)
T ss_pred             -cccccCceEEEEecc---CCEEEEeecCceEEEEEcccccchhhhc-------------------cccceeEEEEEEEe
Confidence             001122278888887   5699999999999999999875432111                   00112258999999


Q ss_pred             CCCCEEEEEecCCeEEEEECCC
Q 004745          258 PNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       258 p~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      |++.-.++++-||.|.+=.++.
T Consensus       187 pn~eGy~~sSieGRVavE~~d~  208 (323)
T KOG1036|consen  187 PNGEGYVVSSIEGRVAVEYFDD  208 (323)
T ss_pred             cCCCceEEEeecceEEEEccCC
Confidence            9888899999999988755554

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=8.7e-25  Score=220.62  Aligned_cols=204  Identities=20%  Similarity=0.276  Sum_probs=166.0

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEE-EEccCCCcCeEE-EEEecCCCCCEEEEEECC
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-SIETGHSANVFC-TKFVPETSDELVVSGAGD   85 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~-~~~~~h~~~V~~-~~~s~~~~g~~l~s~~~d   85 (732)
                      ..+..+++.||+..|..+++.+. ..++++|.||++++|+-..++.+. ....+|.+-|.+ ++|.+. .+..+++|+.|
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~-~~~~l~~g~~D   80 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES-DKGRLVVGGMD   80 (745)
T ss_pred             cceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccc-cCcceEeeccc
Confidence            45778899999999999998754 489999999999999977666554 333678888877 888873 24679999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      .+|.+|.+...          .|+..+++|...|.++....++  .+++||.|.++++|......               
T Consensus        81 ~~i~v~~~~~~----------~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~---------------  133 (745)
T KOG0301|consen   81 TTIIVFKLSQA----------EPLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELV---------------  133 (745)
T ss_pred             ceEEEEecCCC----------CchhhhhccccceeeeecCCcC--ceEecccccceEEecchhhh---------------
Confidence            99999998863          5689999999999999876533  38899999999999875432               


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  245 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (732)
                                  ....+|...|+++.+-|.+  .++||+.|.+|++|.-.  +.+             ++|       .|
T Consensus       134 ------------~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~--~~l-------------~tf-------~g  177 (745)
T KOG0301|consen  134 ------------YSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG--TLL-------------KTF-------SG  177 (745)
T ss_pred             ------------cccCCcchheeeeeecCCC--cEEeccCcceeeeccCC--chh-------------hhh-------cc
Confidence                        2256788899999999973  89999999999999764  223             333       77


Q ss_pred             CccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                      |.+ .|..+++-+++. +++++.||.|+.|++.
T Consensus       178 HtD-~VRgL~vl~~~~-flScsNDg~Ir~w~~~  208 (745)
T KOG0301|consen  178 HTD-CVRGLAVLDDSH-FLSCSNDGSIRLWDLD  208 (745)
T ss_pred             chh-heeeeEEecCCC-eEeecCCceEEEEecc
Confidence            887 499999999865 8999999999999873

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=4e-25  Score=207.71  Aligned_cols=182  Identities=19%  Similarity=0.220  Sum_probs=131.6

Q ss_pred             CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC--cEEEEEeC
Q 004745           60 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASE  137 (732)
Q Consensus        60 ~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~~l~s~s~  137 (732)
                      .|.+.|.++...+    ..|++|+.||.+++||...           +..+.+.+|.++|.+++|.-.+.  ..|++++.
T Consensus       103 ~hdDWVSsv~~~~----~~IltgsYDg~~riWd~~G-----------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~  167 (423)
T KOG0313|consen  103 LHDDWVSSVKGAS----KWILTGSYDGTSRIWDLKG-----------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM  167 (423)
T ss_pred             cchhhhhhhcccC----ceEEEeecCCeeEEEecCC-----------ceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence            5888888888773    6899999999999999983           34789999999999888865332  36999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004745          138 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  217 (732)
Q Consensus       138 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~  217 (732)
                      |.++++|.++.++..                     ...+....+|...|.+++..++ +.++++|+.|.+|.||+..+.
T Consensus       168 Dqtl~Lw~~~~~~~~---------------------~~~~~~~~GHk~~V~sVsv~~s-gtr~~SgS~D~~lkiWs~~~~  225 (423)
T KOG0313|consen  168 DQTLRLWKWNVGENK---------------------VKALKVCRGHKRSVDSVSVDSS-GTRFCSGSWDTMLKIWSVETD  225 (423)
T ss_pred             CceEEEEEecCchhh---------------------hhHHhHhcccccceeEEEecCC-CCeEEeecccceeeecccCCC
Confidence            999999999887643                     1122223378889999999999 889999999999999993221


Q ss_pred             C--CCcccccCCC----CCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          218 P--PLTSCQKRMS----PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       218 ~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      .  .+.....+..    .........|. ..-.||.. +|.++.|++ ...+++++.|.+|+.||+.+++
T Consensus       226 ~~~~~E~~s~~rrk~~~~~~~~~~r~P~-vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~  292 (423)
T KOG0313|consen  226 EEDELESSSNRRRKKQKREKEGGTRTPL-VTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG  292 (423)
T ss_pred             ccccccccchhhhhhhhhhhcccccCce-EEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence            1  1111111000    00000011111 11167877 699999998 5579999999999999999853

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.94  E-value=2.3e-26  Score=222.76  Aligned_cols=259  Identities=17%  Similarity=0.236  Sum_probs=207.1

Q ss_pred             hhhhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEE
Q 004745            3 SSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG   82 (732)
Q Consensus         3 ~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~   82 (732)
                      |++....++++++.||..+|.+++|+++|..+.|++.|+.|++||+++|+++.++.  -...++|+.|.|+. .+.+++|
T Consensus       242 W~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~-~n~fl~G  318 (503)
T KOG0282|consen  242 WNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDN-QNIFLVG  318 (503)
T ss_pred             EEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCC-CcEEEEe
Confidence            34555678999999999999999999999999999999999999999999999983  34568999999995 4899999


Q ss_pred             ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004745           83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  162 (732)
Q Consensus        83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  162 (732)
                      +.|+.|+.||++++          +.++.+..|-+.|..+.|-++ +..+++.+.|++++||+.+.+-.+..        
T Consensus       319 ~sd~ki~~wDiRs~----------kvvqeYd~hLg~i~~i~F~~~-g~rFissSDdks~riWe~~~~v~ik~--------  379 (503)
T KOG0282|consen  319 GSDKKIRQWDIRSG----------KVVQEYDRHLGAILDITFVDE-GRRFISSSDDKSVRIWENRIPVPIKN--------  379 (503)
T ss_pred             cCCCcEEEEeccch----------HHHHHHHhhhhheeeeEEccC-CceEeeeccCccEEEEEcCCCccchh--------
Confidence            99999999999975          337888899999999999994 58999999999999999988764311        


Q ss_pred             ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004745          163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  242 (732)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (732)
                                    +..  .......++..+|+ +.++++-+.|+.|.+|.+...-.+..-          +.|      
T Consensus       380 --------------i~~--~~~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~~~~~r~nkk----------K~f------  426 (503)
T KOG0282|consen  380 --------------IAD--PEMHTMPCLTLHPN-GKWFAAQSMDNYIAIFSTVPPFRLNKK----------KRF------  426 (503)
T ss_pred             --------------hcc--hhhccCcceecCCC-CCeehhhccCceEEEEecccccccCHh----------hhh------
Confidence                          111  12225678899998 789999999999999997644322211          111      


Q ss_pred             cCCCc-cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccc
Q 004745          243 EHGRS-SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRV  321 (732)
Q Consensus       243 ~~~~~-~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  321 (732)
                       .||. .+.-..+.|||||++|++|..||.+.+||.++.+....+..+..++..+.|+|...               ..+
T Consensus       427 -eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~---------------Skv  490 (503)
T KOG0282|consen  427 -EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP---------------SKV  490 (503)
T ss_pred             -cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCc---------------cee
Confidence             3343 12356799999999999999999999999999887777777777777777777532               234


Q ss_pred             ccccccCcchhhHH
Q 004745          322 RGEVATGLGKCRML  335 (732)
Q Consensus       322 ~~~~~~~~d~~~~l  335 (732)
                      +   +++-++.+++
T Consensus       491 a---t~~w~G~Iki  501 (503)
T KOG0282|consen  491 A---TCGWDGLIKI  501 (503)
T ss_pred             E---ecccCceeEe
Confidence            4   7777887776

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.5e-26  Score=202.71  Aligned_cols=215  Identities=17%  Similarity=0.302  Sum_probs=183.1

Q ss_pred             hhccccEeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            7 RRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      .+-++++.++.|+..|.++.|++ +++.++++|.|++|++|+...++.+.++ .+|...|...+|+|.. ++++++++.|
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~-~nlfas~Sgd  169 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHI-PNLFASASGD  169 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCC-CCeEEEccCC
Confidence            34568899999999999999998 5667888899999999999999999999 8999999999999987 6999999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      +++++||++.+. +         ...+..|...|.++.|+..+.++++||+.|+.|++||++..+.              
T Consensus       170 ~~l~lwdvr~~g-k---------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--------------  225 (311)
T KOG0277|consen  170 GTLRLWDVRSPG-K---------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--------------  225 (311)
T ss_pred             ceEEEEEecCCC-c---------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--------------
Confidence            999999998752 2         2447889999999999998989999999999999999998763              


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  245 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (732)
                                ++....+|...|..++|+|....+|++++.|-++||||......            ++..+       ..
T Consensus       226 ----------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds------------~~e~~-------~~  276 (311)
T KOG0277|consen  226 ----------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS------------AIETV-------DH  276 (311)
T ss_pred             ----------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh------------hhhhh-------hc
Confidence                      34555678889999999999888999999999999999875431            11221       23


Q ss_pred             CccccEEEEEEcC-CCCEEEEEecCCeEEEEEC
Q 004745          246 RSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDV  277 (732)
Q Consensus       246 ~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~  277 (732)
                      |.. -+..+.|++ ++.+++..+-|..++||+.
T Consensus       277 HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  277 HTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cce-EEeccccccccCceeeecccccceeeecc
Confidence            444 588999998 5668899999999999974

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.3e-24  Score=199.47  Aligned_cols=206  Identities=21%  Similarity=0.359  Sum_probs=163.4

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      +.+...+..|.++|++++.+  +.++|+||.|-+|+|||+.+...+..+ ..|.+.|+++.|.+...-..|++|+.||.|
T Consensus        33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCCcchhheeeecCCCcE
Confidence            45567788999999999996  899999999999999999999999888 689999999999997423489999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      .+|+...          +.++..+++|...|+.++.+|. +++.++.+.|+.++.||+-+++..            .+..
T Consensus       110 ~iw~~~~----------W~~~~slK~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~WNLV~Gr~a------------~v~~  166 (362)
T KOG0294|consen  110 IIWRVGS----------WELLKSLKAHKGQVTDLSIHPS-GKLALSVGGDQVLRTWNLVRGRVA------------FVLN  166 (362)
T ss_pred             EEEEcCC----------eEEeeeecccccccceeEecCC-CceEEEEcCCceeeeehhhcCccc------------eeec
Confidence            9999985          3558999999999999999995 489999999999999999988732            1111


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                      +.            +  .-+.+.|+|. |.+++.++.+ .|-+|.+.+......+..                    .  
T Consensus       167 L~------------~--~at~v~w~~~-Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~--------------------~--  208 (362)
T KOG0294|consen  167 LK------------N--KATLVSWSPQ-GDHFVVSGRN-KIDIYQLDNASVFREIEN--------------------P--  208 (362)
T ss_pred             cC------------C--cceeeEEcCC-CCEEEEEecc-EEEEEecccHhHhhhhhc--------------------c--
Confidence            11            1  2244899998 7778887765 588998887654433211                    1  


Q ss_pred             ccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ..+.++.|- ++..|++|..|+.|.+||..+
T Consensus       209 ~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds  238 (362)
T KOG0294|consen  209 KRILCATFL-DGSELLVGGDNEWISLKDTDS  238 (362)
T ss_pred             ccceeeeec-CCceEEEecCCceEEEeccCC
Confidence            125566665 455789999999999998765

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=5.7e-24  Score=225.13  Aligned_cols=192  Identities=15%  Similarity=0.174  Sum_probs=148.4

Q ss_pred             EeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecccc
Q 004745           37 GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT  116 (732)
Q Consensus        37 g~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~  116 (732)
                      |+.++.|++|+......+..+ .+|.+.|.+++|+|+. +++|++|+.|++|+|||+.+......  ....++..+.+|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~-~~lLASgS~DgtIrIWDi~t~~~~~~--~i~~p~~~L~gH~  125 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCF-SEILASGSEDLTIRVWEIPHNDESVK--EIKDPQCILKGHK  125 (568)
T ss_pred             CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCCCcccc--ccccceEEeecCC
Confidence            567889999998887777778 7999999999999974 48999999999999999985321100  0013456788999


Q ss_pred             CceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC
Q 004745          117 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  196 (732)
Q Consensus       117 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  196 (732)
                      ..|.+++|+|++..+|++++.|+.|++||+++++..              ..        +    .+...|.+++|+|+ 
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~--------------~~--------i----~~~~~V~Slswspd-  178 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--------------FQ--------I----NMPKKLSSLKWNIK-  178 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--------------EE--------E----ecCCcEEEEEECCC-
Confidence            999999999977667789999999999999887521              00        0    12236899999999 


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc----cEEEEEEcCCCCEEEEEecCC--
Q 004745          197 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL----HLTHVTFSPNGEEVLLSYSGE--  270 (732)
Q Consensus       197 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~l~~sp~g~~l~~~~~dg--  270 (732)
                      |.+|++++.|+.|+|||+++++.+..+                    .+|.+.    .+....|++++.+|++++.|+  
T Consensus       179 G~lLat~s~D~~IrIwD~Rsg~~i~tl--------------------~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~  238 (568)
T PTZ00420        179 GNLLSGTCVGKHMHIIDPRKQEIASSF--------------------HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN  238 (568)
T ss_pred             CCEEEEEecCCEEEEEECCCCcEEEEE--------------------ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC
Confidence            789999999999999999987655443                    334431    133345678999999988764  


Q ss_pred             --eEEEEECCC
Q 004745          271 --HVYLMDVNH  279 (732)
Q Consensus       271 --~v~iwd~~~  279 (732)
                        +|+|||+++
T Consensus       239 ~R~VkLWDlr~  249 (568)
T PTZ00420        239 MREMKLWDLKN  249 (568)
T ss_pred             ccEEEEEECCC
Confidence              799999986

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.8e-24  Score=195.69  Aligned_cols=223  Identities=17%  Similarity=0.231  Sum_probs=158.5

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----eEE-EEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----LLH-SIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~-----~~~-~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      +..|+||.+.|++++|+.||++|||++.|++|+||++++..     +++ .+..+   ..+.+.|.|+. ...++++-..
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc-~s~vv~~~~g  154 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDC-KSVVVSVKRG  154 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCc-ceEEEEEccC
Confidence            45689999999999999999999999999999999988643     222 12112   45789999997 3677777778


Q ss_pred             CcEEEEEcCCCCC-CC-CCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           86 AEVRLFNLSRFSG-RG-LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        86 g~i~vwd~~~~~~-~~-~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      .++++|.+..... .. ........+..-+.|...+..+-... +..+|++++.|..|.+|++. ++.+..         
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~---------  223 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQS---------  223 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeee---------
Confidence            8899998764322 11 11111222333445677777776654 66999999999999999998 553211         


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                                      .......-+..+.+|+ |+++++++.-..|++|.+--.+.- ++      ....+.|     ..
T Consensus       224 ----------------idtnq~~n~~aavSP~-GRFia~~gFTpDVkVwE~~f~kdG-~f------qev~rvf-----~L  274 (420)
T KOG2096|consen  224 ----------------IDTNQSSNYDAAVSPD-GRFIAVSGFTPDVKVWEPIFTKDG-TF------QEVKRVF-----SL  274 (420)
T ss_pred             ----------------eccccccccceeeCCC-CcEEEEecCCCCceEEEEEeccCc-ch------hhhhhhh-----ee
Confidence                            1112224467789999 899999999999999987432210 00      0111111     11


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .||.. .|..++|+|+...+++.+.||+.+|||++-
T Consensus       275 kGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  275 KGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             ccchh-heeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            67777 599999999999999999999999999865

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=1.1e-26  Score=205.74  Aligned_cols=254  Identities=20%  Similarity=0.234  Sum_probs=214.2

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      ++.-+.++.||++.|.....+.+..+-|+++.|-+.+|||.-+|..++.|  .|+.-|.+++|+.++  ++|++|+.+..
T Consensus        48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~ds--~~lltgg~ekl  123 (334)
T KOG0278|consen   48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDS--NYLLTGGQEKL  123 (334)
T ss_pred             CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEecccc--hhhhccchHHH
Confidence            34567899999999999999999999999999999999999999999998  688889999999996  89999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      ++|||++.++         .+...+.+|.+.|..+.|.. ..+.|++.+.|++||+||.+++....              
T Consensus       124 lrvfdln~p~---------App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~--------------  179 (334)
T KOG0278|consen  124 LRVFDLNRPK---------APPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQ--------------  179 (334)
T ss_pred             hhhhhccCCC---------CCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEE--------------
Confidence            9999999764         33578899999999999998 44888899999999999999987321              


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                              .+.    -...|+++..+++ |+ +++-...+.|.+||..+...++....                    . 
T Consensus       180 --------sL~----~~s~VtSlEvs~d-G~-ilTia~gssV~Fwdaksf~~lKs~k~--------------------P-  224 (334)
T KOG0278|consen  180 --------SLE----FNSPVTSLEVSQD-GR-ILTIAYGSSVKFWDAKSFGLLKSYKM--------------------P-  224 (334)
T ss_pred             --------EEe----cCCCCcceeeccC-CC-EEEEecCceeEEeccccccceeeccC--------------------c-
Confidence                    011    1237899999998 54 55556678999999999887765422                    1 


Q ss_pred             cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccccccccc
Q 004745          248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVAT  327 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  327 (732)
                       ..|.+...+|+...+++|+.|+.++.||..++.....               -.++|-.+|.++.|+|||...+   ++
T Consensus       225 -~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~---------------~nkgh~gpVhcVrFSPdGE~yA---sG  285 (334)
T KOG0278|consen  225 -CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS---------------YNKGHFGPVHCVRFSPDGELYA---SG  285 (334)
T ss_pred             -cccccccccCCCceEEecCcceEEEEEeccCCceeee---------------cccCCCCceEEEEECCCCceee---cc
Confidence             1488999999999999999999999999999754321               1478888999999999999999   99


Q ss_pred             CcchhhHHHHHHHhhhhcCCC
Q 004745          328 GLGKCRMLVEIARNSLEEGKH  348 (732)
Q Consensus       328 ~~d~~~~l~~~~~~~~~~~~~  348 (732)
                      +.|++++|     |....++.
T Consensus       286 SEDGTirl-----WQt~~~~~  301 (334)
T KOG0278|consen  286 SEDGTIRL-----WQTTPGKT  301 (334)
T ss_pred             CCCceEEE-----EEecCCCc
Confidence            99999999     88876664

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-24  Score=219.10  Aligned_cols=503  Identities=14%  Similarity=0.095  Sum_probs=306.0

Q ss_pred             eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCC-CcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004745           15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNL   93 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h-~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~   93 (732)
                      +.--..+|.++||+.+.+.||.+-.||.|-||++...-....+..++ ...|.+++|++.   ..|+|.+.+|.|.-||+
T Consensus        21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~---~RLFS~g~sg~i~EwDl   97 (691)
T KOG2048|consen   21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG---GRLFSSGLSGSITEWDL   97 (691)
T ss_pred             EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC---CeEEeecCCceEEEEec
Confidence            34456899999999999999999999999999999875554443555 468999999965   78999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745           94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                      .+.          +++..+..-.+.|++++.+|.+ ..++.|+.||.+..++...++..                     
T Consensus        98 ~~l----------k~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~---------------------  145 (691)
T KOG2048|consen   98 HTL----------KQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKIT---------------------  145 (691)
T ss_pred             ccC----------ceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEE---------------------
Confidence            974          3366777778999999999954 88889999997777776655421                     


Q ss_pred             cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004745          174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  253 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (732)
                        .-.........|.+++|+|+ +..+++|+.||.|++||..++..+......           ...+ ..+ ...-|++
T Consensus       146 --~~r~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~-----------~d~l-~k~-~~~iVWS  209 (691)
T KOG2048|consen  146 --YKRSLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIITMQ-----------LDRL-SKR-EPTIVWS  209 (691)
T ss_pred             --EEeecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEeeec-----------cccc-ccC-CceEEEE
Confidence              11112234568999999999 778999999999999999987655411100           0000 011 1223889


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhh
Q 004745          254 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCR  333 (732)
Q Consensus       254 l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~  333 (732)
                      +.|-.++ .|++|...|+|.+||...+...+                ....|...+.+++..+++..+.   +++.|+.+
T Consensus       210 v~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiq----------------S~~~h~adVl~Lav~~~~d~vf---saGvd~~i  269 (691)
T KOG2048|consen  210 VLFLRDS-TIASGDSAGTVTFWDSIFGTLIQ----------------SHSCHDADVLALAVADNEDRVF---SAGVDPKI  269 (691)
T ss_pred             EEEeecC-cEEEecCCceEEEEcccCcchhh----------------hhhhhhcceeEEEEcCCCCeEE---EccCCCce
Confidence            9998777 48999999999999999876443                4455666777777788877777   77777776


Q ss_pred             HHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCC-ccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchh
Q 004745          334 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP-MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA  412 (732)
Q Consensus       334 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  412 (732)
                      ..     .....+..  .  +........|..++.. +.....+.+++.|.++..=....+...                
T Consensus       270 i~-----~~~~~~~~--~--wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~----------------  324 (691)
T KOG2048|consen  270 IQ-----YSLTTNKS--E--WVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNM----------------  324 (691)
T ss_pred             EE-----EEecCCcc--c--eeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCch----------------
Confidence            64     33332211  0  0111122223322200 000002333443433322211100000                


Q ss_pred             hHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCC--CCCCCC----CC-----c
Q 004745          413 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGG--ARSEPR----TG-----R  481 (732)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~--~~~~~~----~g-----~  481 (732)
                                          ........|.           ...+..+..+....+|...  ..|-+.    +|     .
T Consensus       325 --------------------~h~~~~~~p~-----------~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~  373 (691)
T KOG2048|consen  325 --------------------DHRQKNLFPA-----------SDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIH  373 (691)
T ss_pred             --------------------hhhccccccc-----------cceeecCccceEEEEeccccccceeccCcccccccChhh
Confidence                                0001111221           2223333344444444211  111111    11     2


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCccee------eccCCCCcccc
Q 004745          482 VLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVR------IHRRGDSARET  555 (732)
Q Consensus       482 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~------~~~~~~~v~~~  555 (732)
                      ++.+.+.....-...+.||||                  +.++.+.- ...+++.+.-.....      .....-+...+
T Consensus       374 Llkl~~k~~~nIs~~aiSPdg------------------~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i  434 (691)
T KOG2048|consen  374 LLKLFTKEKENISCAAISPDG------------------NLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAI  434 (691)
T ss_pred             heeeecCCccceeeeccCCCC------------------CEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceee
Confidence            333333333333378889999                  55555432 224444442211111      11122345677


Q ss_pred             ccCCCCCCCCCCC-CCCCCCcccccc-ccccceeEe--eeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEE
Q 004745          556 VDANGSSGSPSSS-SQNDRIPYQPET-VIDMKQRYV--GHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLI  631 (732)
Q Consensus       556 ~~s~d~~~l~~~~-~~~~~~~~~~~~-~~~~~~~~~--gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~  631 (732)
                      .|+-|+..+...+ ...+-.....++ .++.+..+.  +....   |..+. .||||+|||..+.+|.|.+|++++++.-
T Consensus       435 ~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~---I~~l~-~SsdG~yiaa~~t~g~I~v~nl~~~~~~  510 (691)
T KOG2048|consen  435 SFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPS---ISRLV-VSSDGNYIAAISTRGQIFVYNLETLESH  510 (691)
T ss_pred             EEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCc---ceeEE-EcCCCCEEEEEeccceEEEEEcccceee
Confidence            8888888777764 122222222222 122232222  22333   33333 6999999999999999999999998865


Q ss_pred             EEEecCcccEEEEeecCCC-CeEEEecCCCcEEEEcC
Q 004745          632 KMLLGDEAVVNCVQCHPFD-CVVATSGIDNTIKIWTP  667 (732)
Q Consensus       632 ~~l~gH~~~V~~v~fsp~~-~~l~S~s~D~~i~vW~~  667 (732)
                      .....-...||+++|+|.. +.|+.+-.|+.|.=+|+
T Consensus       511 ~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi  547 (691)
T KOG2048|consen  511 LLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDI  547 (691)
T ss_pred             cchhccCcceeeeeccccccCcEEEEecCCeEEEEec
Confidence            5553445889999999655 57888888999999988

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=1.3e-24  Score=229.36  Aligned_cols=201  Identities=27%  Similarity=0.384  Sum_probs=171.2

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF   91 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw   91 (732)
                      ...|.||.+.|.+++|..-+.+|++|+.|.+++|||..++++.+.+ .+|.+.|.++...+.    ++++|+.|.+|++|
T Consensus       242 ~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~~~----~~~sgs~D~tVkVW  316 (537)
T KOG0274|consen  242 LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTIDPF----LLVSGSRDNTVKVW  316 (537)
T ss_pred             EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEccCc----eEeeccCCceEEEE
Confidence            3349999999999999987789999999999999999999999999 799999999988764    78999999999999


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      ++.++          .++..+.+|.++|+++...   +.++++|+.|++|++||+.+++                     
T Consensus       317 ~v~n~----------~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~---------------------  362 (537)
T KOG0274|consen  317 DVTNG----------ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGK---------------------  362 (537)
T ss_pred             eccCc----------ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhce---------------------
Confidence            99964          3378888899999999996   4799999999999999999776                     


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC-CCCcccccCCCCCCccccccccccccCCCcccc
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  250 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (732)
                          .+....+|...|+++.+.+.  ..+++|+.|++|++||+++. +.+..+                    .+|.. -
T Consensus       363 ----cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl--------------------~~h~~-~  415 (537)
T KOG0274|consen  363 ----CLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTL--------------------QGHTS-L  415 (537)
T ss_pred             ----eeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhh--------------------cCCcc-c
Confidence                34556678889999988863  69999999999999999987 444433                    55555 2


Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          251 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       251 i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      +..+  ...+++|++++.|++|++||..++
T Consensus       416 v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~  443 (537)
T KOG0274|consen  416 VSSL--LLRDNFLVSSSADGTIKLWDAEEG  443 (537)
T ss_pred             cccc--ccccceeEeccccccEEEeecccC
Confidence            5444  346789999999999999998874

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.2e-24  Score=194.53  Aligned_cols=160  Identities=21%  Similarity=0.271  Sum_probs=125.1

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  138 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  138 (732)
                      ++|...|.+++|+-+  |..|++|+.|+++.+|++.....        ..-....+|.+.|..++|+|..+.+|++++.|
T Consensus        17 ~~~~~~v~Sv~wn~~--g~~lasgs~dktv~v~n~e~~r~--------~~~~~~~gh~~svdql~w~~~~~d~~atas~d   86 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCD--GTKLASGSFDKTVSVWNLERDRF--------RKELVYRGHTDSVDQLCWDPKHPDLFATASGD   86 (313)
T ss_pred             hhhhhcceEEEEccc--CceeeecccCCceEEEEecchhh--------hhhhcccCCCcchhhheeCCCCCcceEEecCC
Confidence            689999999999999  69999999999999999985421        11345678999999999999999999999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      .+|++||++.++++...            .              ..+.=.-+.|+|+ +.++++++.|..|.+.|.++.+
T Consensus        87 k~ir~wd~r~~k~~~~i------------~--------------~~~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~  139 (313)
T KOG1407|consen   87 KTIRIWDIRSGKCTARI------------E--------------TKGENINITWSPD-GEYIAVGNKDDRITFIDARTYK  139 (313)
T ss_pred             ceEEEEEeccCcEEEEe------------e--------------ccCcceEEEEcCC-CCEEEEecCcccEEEEEecccc
Confidence            99999999998854111            0              0112235789999 7899999999999999999876


Q ss_pred             CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 004745          219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  277 (732)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~  277 (732)
                      .....+                      ....++.+.|+-++.+++..+.-|.|.|-..
T Consensus       140 ~~~~~~----------------------~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy  176 (313)
T KOG1407|consen  140 IVNEEQ----------------------FKFEVNEISWNNSNDLFFLTNGLGCVEILSY  176 (313)
T ss_pred             eeehhc----------------------ccceeeeeeecCCCCEEEEecCCceEEEEec
Confidence            554331                      1113778899987887777777777777643

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.5e-25  Score=220.33  Aligned_cols=227  Identities=20%  Similarity=0.262  Sum_probs=178.3

Q ss_pred             cCCcee---EEEEc-CCCCEEEEEeCCCcEEEEeCCCCe------eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745           18 HQGCVN---AISWN-SKGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus        18 h~~~V~---~l~~s-~dg~~lasg~~dg~i~vWd~~~~~------~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      |...|.   ++..+ |.+++|+|||.||.|++|++....      .+..+ +.|...|+.+....+  ++.|+|++.|-+
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~--~~tlIS~SsDtT   96 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGN--GKTLISASSDTT   96 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcC--CCceEEecCCce
Confidence            555555   45555 467789999999999999986432      35666 689999999999988  489999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      |++|+......        .+..++..|.+.|.++++-..+..++|+||-|+.|.+||+.++....              
T Consensus        97 VK~W~~~~~~~--------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l--------------  154 (735)
T KOG0308|consen   97 VKVWNAHKDNT--------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATL--------------  154 (735)
T ss_pred             EEEeecccCcc--------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhh--------------
Confidence            99999986431        45788899999999999944366899999999999999999874200              


Q ss_pred             eccCCccccccCCC-CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004745          168 DLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       168 ~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                       +.+.......... ++...|++++.++. +..|++|+..+.+++||.++.+.+..+                    .||
T Consensus       155 -~~s~n~~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgtek~lr~wDprt~~kimkL--------------------rGH  212 (735)
T KOG0308|consen  155 -VASFNNVTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKKIMKL--------------------RGH  212 (735)
T ss_pred             -hhhccccccccCCCCCccceeeeecCCc-ceEEEecCcccceEEeccccccceeee--------------------ecc
Confidence             0000011112222 67789999999998 789999999999999999998877666                    778


Q ss_pred             ccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCC
Q 004745          247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA  292 (732)
Q Consensus       247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  292 (732)
                      .. .|..+..++||..+++++.||+|++||+...+....+..|.+.
T Consensus       213 Td-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~  257 (735)
T KOG0308|consen  213 TD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG  257 (735)
T ss_pred             cc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence            87 5999999999999999999999999999886555444443333

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=3.5e-25  Score=203.26  Aligned_cols=248  Identities=18%  Similarity=0.212  Sum_probs=203.2

Q ss_pred             eeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004745           14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL   93 (732)
Q Consensus        14 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~   93 (732)
                      .|.-|.++|.|+.||.|...||+|+.||.|+||.+.+|+|+++|...|...|+|+.|+.+  +..+++++.|.++++.-+
T Consensus       258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD--~SqiLS~sfD~tvRiHGl  335 (508)
T KOG0275|consen  258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD--NSQILSASFDQTVRIHGL  335 (508)
T ss_pred             ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC--cchhhcccccceEEEecc
Confidence            345588999999999999999999999999999999999999997799999999999999  489999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745           94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                      +.+          +++..+++|..-|+...|.+++ +.+++++.||+|++|+..+.+...                    
T Consensus       336 KSG----------K~LKEfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~--------------------  384 (508)
T KOG0275|consen  336 KSG----------KCLKEFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECLS--------------------  384 (508)
T ss_pred             ccc----------hhHHHhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhhhh--------------------
Confidence            864          3489999999999999999955 899999999999999998877431                    


Q ss_pred             cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004745          174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  253 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (732)
                         -..+.+...+|.++-.-|.++..++++...++|+|.++.. +.+.++             ..     ....++...+
T Consensus       385 ---Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsf-------------sS-----GkREgGdFi~  442 (508)
T KOG0275|consen  385 ---TFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSF-------------SS-----GKREGGDFIN  442 (508)
T ss_pred             ---hccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeee-------------cc-----CCccCCceEE
Confidence               1222335568888988898888999999999999999874 222222             11     1122334777


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhh
Q 004745          254 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCR  333 (732)
Q Consensus       254 l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~  333 (732)
                      ...+|.|.++++.+.|+.++.|.+.+++....+..+...+-.++.+|                ..+.+|   +-+.|+..
T Consensus       443 ~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP----------------HqNllA---sYsEDgll  503 (508)
T KOG0275|consen  443 AILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP----------------HQNLLA---SYSEDGLL  503 (508)
T ss_pred             EEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc----------------ccchhh---hhcccchh
Confidence            88999999999999999999999999887776666555555555554                445667   88888888


Q ss_pred             HH
Q 004745          334 ML  335 (732)
Q Consensus       334 ~l  335 (732)
                      ++
T Consensus       504 KL  505 (508)
T KOG0275|consen  504 KL  505 (508)
T ss_pred             hh
Confidence            88

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=1.1e-23  Score=223.02  Aligned_cols=233  Identities=15%  Similarity=0.192  Sum_probs=164.9

Q ss_pred             cccEeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe--------eEEEEccCCCcCeEEEEEecCCCCCEEE
Q 004745           10 SQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK--------LLHSIETGHSANVFCTKFVPETSDELVV   80 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~--------~~~~~~~~h~~~V~~~~~s~~~~g~~l~   80 (732)
                      ..+..+.+|.++|.+++|+|+ +.+||||+.|++|+|||+.++.        .+..+ .+|...|.+++|+|++ ..+|+
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~sVaf~P~g-~~iLa  142 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKISIIDWNPMN-YYIMC  142 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEEEEEECCCC-CeEEE
Confidence            456789999999999999996 7899999999999999997642        23345 6899999999999984 24568


Q ss_pred             EEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004745           81 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        81 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  160 (732)
                      +++.|++|+|||+++...          +..+. |...|.+++|+|++ .+|++++.|+.|++||+++++.+.       
T Consensus       143 SgS~DgtIrIWDl~tg~~----------~~~i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~-------  203 (568)
T PTZ00420        143 SSGFDSFVNIWDIENEKR----------AFQIN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIAS-------  203 (568)
T ss_pred             EEeCCCeEEEEECCCCcE----------EEEEe-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEE-------
Confidence            999999999999986431          33443 56789999999955 899999999999999999876320       


Q ss_pred             ccceEEeeccCCccccccCCCCCcc-----ceEEEEecCCCCCEEEEEeCCC----eEEEEECCCC-CCCcccccCCCCC
Q 004745          161 ECRNILLDLRCGAKRSLADPPKQTL-----SLKSCDISSTRPHLLLVGGSDA----FARLYDRRML-PPLTSCQKRMSPP  230 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~~l~tg~~dg----~v~iwd~~~~-~~~~~~~~~~~~~  230 (732)
                                        ....|..     .+....|+++ +.+|++++.|+    .|+|||+++. +++..+..     
T Consensus       204 ------------------tl~gH~g~~~s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-----  259 (568)
T PTZ00420        204 ------------------SFHIHDGGKNTKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-----  259 (568)
T ss_pred             ------------------EEecccCCceeEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-----
Confidence                              1112222     2333456677 66888877764    7999999963 33322110     


Q ss_pred             CccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcc-eeeecCCCCceeeeccC
Q 004745          231 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA-MRYTVGDASKIMSFTPT  301 (732)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~  301 (732)
                                   ..+.+ .+......++|.++++|+.|+.|++|++..+.... ..+....+.+.++|.|.
T Consensus       260 -------------d~~~~-~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk  317 (568)
T PTZ00420        260 -------------DNASA-PLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK  317 (568)
T ss_pred             -------------cCCcc-ceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence                         11111 23444445678899999999999999998753211 11223344555666554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.2e-24  Score=220.23  Aligned_cols=244  Identities=15%  Similarity=0.169  Sum_probs=205.3

Q ss_pred             eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004745           16 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR   95 (732)
Q Consensus        16 ~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~   95 (732)
                      ..+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+..+|...|-+++|..    ..+.+|+.|+.|.++|++.
T Consensus       214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~----~~lssGsr~~~I~~~dvR~  289 (484)
T KOG0305|consen  214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS----SVLSSGSRDGKILNHDVRI  289 (484)
T ss_pred             ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC----ceEEEecCCCcEEEEEEec
Confidence            334899999999999999999999999999999999999999433999999999994    5899999999999999997


Q ss_pred             CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004745           96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  175 (732)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (732)
                      .+..         ...+.+|...|..+.|++++ +++|+|+.|+.+.|||....++                        
T Consensus       290 ~~~~---------~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p------------------------  335 (484)
T KOG0305|consen  290 SQHV---------VSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEP------------------------  335 (484)
T ss_pred             chhh---------hhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccc------------------------
Confidence            5432         23588999999999999955 9999999999999999955542                        


Q ss_pred             cccCCCCCccceEEEEecCCCCCEEEEEe--CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004745          176 SLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  253 (732)
Q Consensus       176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (732)
                       +.....|...|.+++|+|-...+||+|+  .|++|++||..++..+..+                      ..+..|.+
T Consensus       336 -~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----------------------dtgsQVcs  392 (484)
T KOG0305|consen  336 -KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----------------------DTGSQVCS  392 (484)
T ss_pred             -cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc----------------------ccCCceee
Confidence             3334468889999999999888999985  5999999999988766544                      22336999


Q ss_pred             EEEcCCCCEEEEEec--CCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcch
Q 004745          254 VTFSPNGEEVLLSYS--GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGK  331 (732)
Q Consensus       254 l~~sp~g~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~  331 (732)
                      |.|++..+.|+++..  ++.|.||+..+.+...                .+.+|...|..++.+|||..++   +++.|.
T Consensus       393 L~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~----------------~l~gH~~RVl~la~SPdg~~i~---t~a~DE  453 (484)
T KOG0305|consen  393 LIWSKKYKELLSTHGYSENQITLWKYPSMKLVA----------------ELLGHTSRVLYLALSPDGETIV---TGAADE  453 (484)
T ss_pred             EEEcCCCCEEEEecCCCCCcEEEEeccccceee----------------eecCCcceeEEEEECCCCCEEE---EecccC
Confidence            999999977777644  7899999998844332                5667888888999999999999   999999


Q ss_pred             hhHHHHHHHhhhh
Q 004745          332 CRMLVEIARNSLE  344 (732)
Q Consensus       332 ~~~l~~~~~~~~~  344 (732)
                      ++++     |.+-
T Consensus       454 Tlrf-----w~~f  461 (484)
T KOG0305|consen  454 TLRF-----WNLF  461 (484)
T ss_pred             cEEe-----cccc
Confidence            9999     7664

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=2.1e-24  Score=214.87  Aligned_cols=215  Identities=18%  Similarity=0.257  Sum_probs=149.4

Q ss_pred             hccccEeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEE-----EEccCCCcCeEEEEEecCCCCCEEEE
Q 004745            8 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLH-----SIETGHSANVFCTKFVPETSDELVVS   81 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~-----~~~~~h~~~V~~~~~s~~~~g~~l~s   81 (732)
                      +-+-+..|.+|.+.|+.+.|+| +..+||||+.|..|+||.+..+-...     ....+..-.|.|+.|+|.. +.++++
T Consensus        68 ~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTa-Dgil~s  146 (1012)
T KOG1445|consen   68 RTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTA-DGILAS  146 (1012)
T ss_pred             cccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCc-CceEEe
Confidence            3445667889999999999999 55689999999999999987542211     1112334568999999987 356665


Q ss_pred             EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004745           82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      + .-|.++|||+.+.          +.+..+.+|.+.|.+..|+.|+ .++++.+.|+.|+|||.+..-.......+|..
T Consensus       147 ~-a~g~v~i~D~stq----------k~~~el~~h~d~vQSa~WseDG-~llatscKdkqirifDPRa~~~piQ~te~H~~  214 (1012)
T KOG1445|consen  147 G-AHGSVYITDISTQ----------KTAVELSGHTDKVQSADWSEDG-KLLATSCKDKQIRIFDPRASMEPIQTTEGHGG  214 (1012)
T ss_pred             c-cCceEEEEEcccC----------ceeecccCCchhhhccccccCC-ceEeeecCCcceEEeCCccCCCcccccccccc
Confidence            5 5799999999974          3377889999999999999955 99999999999999999886544333333322


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC----CeEEEEECCCCC-CCcccccCCCCCCccccc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLP-PLTSCQKRMSPPPCVNYF  236 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d----g~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~  236 (732)
                      .                       .=..+.|..+ -..|++.+.+    ..|++||.+... +++++..           
T Consensus       215 ~-----------------------rdsRv~w~Gn-~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tlel-----------  259 (1012)
T KOG1445|consen  215 M-----------------------RDSRVLWAGN-WERLISTGFTTKRIREVRAYDTRKFGAPVHTLEL-----------  259 (1012)
T ss_pred             c-----------------------hhheeeeccc-hhhhhhcccchhhheeeeeeeccccCCcceeEEe-----------
Confidence            1                       1234556544 2355555544    569999998643 2222110           


Q ss_pred             cccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCC
Q 004745          237 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  279 (732)
Q Consensus       237 ~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~  279 (732)
                               .....|.---|.||.++|+.++. +.+++.+.+..
T Consensus       260 ---------d~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d  294 (1012)
T KOG1445|consen  260 ---------DSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQD  294 (1012)
T ss_pred             ---------ecccceEeeeecCCCceEEEecCCcceEEEEEecC
Confidence                     01112555567888887766665 77888888776

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=3e-23  Score=200.09  Aligned_cols=207  Identities=19%  Similarity=0.269  Sum_probs=170.2

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEE-EE---------------c-cCCCcCeEEEEEecCC
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-SI---------------E-TGHSANVFCTKFVPET   74 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~-~~---------------~-~~h~~~V~~~~~s~~~   74 (732)
                      ++.+..|.-+|.+++++||..+.++++.|++|.=|++.+++... .+               . ..|...|.+++.+++ 
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D-  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD-  213 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC-
Confidence            56677899999999999999999999999999999998887441 11               1 267888999999999 


Q ss_pred             CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004745           75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  154 (732)
Q Consensus        75 ~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~  154 (732)
                       |++|++|+.|..|.||+.++.          ++++.+.+|.+.|.+++|-. +.+.+++++.|++|++|++....    
T Consensus       214 -gkylatgg~d~~v~Iw~~~t~----------ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s----  277 (479)
T KOG0299|consen  214 -GKYLATGGRDRHVQIWDCDTL----------EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS----  277 (479)
T ss_pred             -CcEEEecCCCceEEEecCccc----------chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH----
Confidence             699999999999999999974          44788999999999999987 67889999999999999998765    


Q ss_pred             CCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccc
Q 004745          155 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  234 (732)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  234 (732)
                                           .+.+..+|...|.+|....- .+.+-+|+.|+++++|++....++-             
T Consensus       278 ---------------------~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesqli-------------  322 (479)
T KOG0299|consen  278 ---------------------YVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQLI-------------  322 (479)
T ss_pred             ---------------------HHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccceee-------------
Confidence                                 34556678889999888775 5566667799999999995432211             


Q ss_pred             cccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          235 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                       |       .++.+ .+-+++|-.+. .+++|+.+|.|.+|++...
T Consensus       323 -f-------rg~~~-sidcv~~In~~-HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  323 -F-------RGGEG-SIDCVAFINDE-HFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             -e-------eCCCC-CeeeEEEeccc-ceeeccCCceEEEeeeccc
Confidence             1       33444 48889987654 6999999999999999883

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=3e-24  Score=196.23  Aligned_cols=176  Identities=21%  Similarity=0.306  Sum_probs=136.4

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC--CC----C--CCCCCCCceeeccccCceeEEEEecCCCc
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG--RG----L--DDNAITPSALYQCHTRRVKKLAVEVGNPH  130 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~--~~----~--~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  130 (732)
                      ..|+.++.+.+|+|+  |.++++|+.|..|+|.|++..-.  ..    .  .......++++..|.+.|+++.|+|. ..
T Consensus       109 t~HK~~cR~aafs~D--G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr-e~  185 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPD--GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR-ET  185 (430)
T ss_pred             eecccceeeeeeCCC--CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch-hh
Confidence            689999999999999  69999999999999999982100  00    0  01112346788899999999999995 49


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004745          131 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  210 (732)
Q Consensus       131 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~  210 (732)
                      +|++++.|++|+++|+......                       ..........+|.+++|+|. |.+|++|....++|
T Consensus       186 ILiS~srD~tvKlFDfsK~saK-----------------------rA~K~~qd~~~vrsiSfHPs-GefllvgTdHp~~r  241 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAK-----------------------RAFKVFQDTEPVRSISFHPS-GEFLLVGTDHPTLR  241 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHH-----------------------HHHHHhhccceeeeEeecCC-CceEEEecCCCcee
Confidence            9999999999999999775421                       00001112348999999998 88999999999999


Q ss_pred             EEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +||+++.+..-.                .. ...+|.+ .|+++.+++.|++.++++.||.|+|||--+
T Consensus       242 lYdv~T~Qcfvs----------------an-Pd~qht~-ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS  292 (430)
T KOG0640|consen  242 LYDVNTYQCFVS----------------AN-PDDQHTG-AITQVRYSSTGSLYVTASKDGAIKLWDGVS  292 (430)
T ss_pred             EEeccceeEeee----------------cC-ccccccc-ceeEEEecCCccEEEEeccCCcEEeecccc
Confidence            999998743211                11 1245666 599999999999999999999999998554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.5e-24  Score=210.62  Aligned_cols=247  Identities=21%  Similarity=0.257  Sum_probs=195.1

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      ...+++.-..+.|+++.|..||++||.|...|.|+|+|..+...+..+ .+|+.+|..+.|+|.. +..+++|+.|+.++
T Consensus        59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~d-~t~l~s~sDd~v~k  136 (487)
T KOG0310|consen   59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQD-NTMLVSGSDDKVVK  136 (487)
T ss_pred             hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH-hhccCceeEEEecccC-CeEEEecCCCceEE
Confidence            344556667889999999999999999999999999997665556666 7999999999999986 68899999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  169 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  169 (732)
                      +||+.+..          ....+.+|++.|.+.+|+|.++++++|||.||.|++||++.....             +.. 
T Consensus       137 ~~d~s~a~----------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~-------------v~e-  192 (487)
T KOG0310|consen  137 YWDLSTAY----------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR-------------VVE-  192 (487)
T ss_pred             EEEcCCcE----------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce-------------eEE-
Confidence            99999642          145788999999999999988899999999999999999886411             111 


Q ss_pred             cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004745          170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                                 ..|..+|.++.+-|. |.++++++ .+.|+|||+-++.++-...                   ..|.. 
T Consensus       193 -----------lnhg~pVe~vl~lps-gs~iasAg-Gn~vkVWDl~~G~qll~~~-------------------~~H~K-  239 (487)
T KOG0310|consen  193 -----------LNHGCPVESVLALPS-GSLIASAG-GNSVKVWDLTTGGQLLTSM-------------------FNHNK-  239 (487)
T ss_pred             -----------ecCCCceeeEEEcCC-CCEEEEcC-CCeEEEEEecCCceehhhh-------------------hcccc-
Confidence                       135558999999998 67888877 4689999998665432110                   22555 


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCc
Q 004745          250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL  329 (732)
Q Consensus       250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  329 (732)
                      .|+|+++..++..|++|+-|+.|++||+.+.+...                 .-....++.+++.+|+++.++   .+-.
T Consensus       240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~-----------------s~~~~~pvLsiavs~dd~t~v---iGms  299 (487)
T KOG0310|consen  240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH-----------------SWKYPGPVLSIAVSPDDQTVV---IGMS  299 (487)
T ss_pred             eEEEEEeecCCceEeecccccceEEEEccceEEEE-----------------eeecccceeeEEecCCCceEE---Eecc
Confidence            59999999999999999999999999977643211                 112345677888888888887   6666


Q ss_pred             chhhHH
Q 004745          330 GKCRML  335 (732)
Q Consensus       330 d~~~~l  335 (732)
                      ++...+
T Consensus       300 nGlv~~  305 (487)
T KOG0310|consen  300 NGLVSI  305 (487)
T ss_pred             cceeee
Confidence            666554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5.2e-23  Score=188.76  Aligned_cols=202  Identities=12%  Similarity=0.186  Sum_probs=156.3

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCC
Q 004745           22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  101 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~  101 (732)
                      -.|+.|++.|.+||+|..||.|.|||+.+...-..+ .+|..+|.+++||++  |..|+|++.|..|++||+..++    
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs----   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGS----   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCC--CCEeeeecCCceeEEEeccCCC----
Confidence            789999999999999999999999999998866666 899999999999999  6999999999999999999754    


Q ss_pred             CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004745          102 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  181 (732)
Q Consensus       102 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (732)
                            +++.++ ...+|+...|+|.+.+.++..-.+..-.+-++..+...             ++        +.....
T Consensus        99 ------~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-------------~L--------p~d~d~  150 (405)
T KOG1273|consen   99 ------PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-------------VL--------PKDDDG  150 (405)
T ss_pred             ------ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-------------ec--------cCCCcc
Confidence                  355555 47899999999988777777666666666666554311             00        000000


Q ss_pred             CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC
Q 004745          182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  261 (732)
Q Consensus       182 ~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~  261 (732)
                      .....-.+..|.+. |+++++|...|.+.++|..+.+.+..+.-                    .....|..+.|+..|+
T Consensus       151 dln~sas~~~fdr~-g~yIitGtsKGkllv~~a~t~e~vas~ri--------------------ts~~~IK~I~~s~~g~  209 (405)
T KOG1273|consen  151 DLNSSASHGVFDRR-GKYIITGTSKGKLLVYDAETLECVASFRI--------------------TSVQAIKQIIVSRKGR  209 (405)
T ss_pred             ccccccccccccCC-CCEEEEecCcceEEEEecchheeeeeeee--------------------chheeeeEEEEeccCc
Confidence            11111223357777 89999999999999999998765544321                    1112589999999999


Q ss_pred             EEEEEecCCeEEEEECCC
Q 004745          262 EVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       262 ~l~~~~~dg~v~iwd~~~  279 (732)
                      +|+..+.|..||.|+++.
T Consensus       210 ~liiNtsDRvIR~ye~~d  227 (405)
T KOG1273|consen  210 FLIINTSDRVIRTYEISD  227 (405)
T ss_pred             EEEEecCCceEEEEehhh
Confidence            999999999999999876

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=6.3e-24  Score=204.98  Aligned_cols=265  Identities=15%  Similarity=0.266  Sum_probs=203.8

Q ss_pred             ccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeE----------EEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745           17 GHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLL----------HSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~~----------~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      .|.+.|+.+.+-|.. ..+|+++..+.|.|||..+..-.          .++ .+|...=++++|++.. .-.|++++.|
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L-~gH~~eg~glsWn~~~-~g~Lls~~~d  199 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRL-KGHEKEGYGLSWNRQQ-EGTLLSGSDD  199 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEE-Eeeccccccccccccc-ceeEeeccCC
Confidence            499999999999955 57777888999999997643211          144 6898878899999986 3689999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      ++|++||+......   .....+...+.+|.+.|..++|++....+|++++.|+.+.|||+++....             
T Consensus       200 ~~i~lwdi~~~~~~---~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~-------------  263 (422)
T KOG0264|consen  200 HTICLWDINAESKE---DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK-------------  263 (422)
T ss_pred             CcEEEEeccccccC---CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC-------------
Confidence            99999999864431   12235677889999999999999998899999999999999999963211             


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  245 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (732)
                                .......|...|.|++|+|.++.+||+|+.|++|++||+|+...            ++..+       .+
T Consensus       264 ----------~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~------------~lh~~-------e~  314 (422)
T KOG0264|consen  264 ----------PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK------------PLHTF-------EG  314 (422)
T ss_pred             ----------CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc------------Cceec-------cC
Confidence                      22333467889999999999999999999999999999998652            22222       66


Q ss_pred             CccccEEEEEEcCCC-CEEEEEecCCeEEEEECCCCCCcce-eeecCCCCceeeeccCCCCccCCCCCCccCCCcc-ccc
Q 004745          246 RSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNI-RVR  322 (732)
Q Consensus       246 ~~~~~i~~l~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~  322 (732)
                      |.. .|.+|.|+|.. ..|++++.|+.+.|||+..-...+. ......++..+-   .-.||...|..+.+.|+-- .++
T Consensus       315 H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF---~HgGH~~kV~DfsWnp~ePW~I~  390 (422)
T KOG0264|consen  315 HED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF---IHGGHTAKVSDFSWNPNEPWTIA  390 (422)
T ss_pred             CCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE---EecCcccccccccCCCCCCeEEE
Confidence            766 59999999965 5778888899999999987554432 222222222221   2357888888888888655 455


Q ss_pred             cccccCcchhhHH
Q 004745          323 GEVATGLGKCRML  335 (732)
Q Consensus       323 ~~~~~~~d~~~~l  335 (732)
                         +++.|+.+++
T Consensus       391 ---SvaeDN~LqI  400 (422)
T KOG0264|consen  391 ---SVAEDNILQI  400 (422)
T ss_pred             ---EecCCceEEE
Confidence               9999999999

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=1.2e-23  Score=201.02  Aligned_cols=253  Identities=17%  Similarity=0.185  Sum_probs=200.5

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      ..+.+.+|+||...|+.+.|+|+...+++++.|..|+||........... ..|..+|+.+..+|.  |.||++++.|++
T Consensus       250 s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~-~~h~~~V~~ls~h~t--geYllsAs~d~~  326 (506)
T KOG0289|consen  250 SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS-RPHEEPVTGLSLHPT--GEYLLSASNDGT  326 (506)
T ss_pred             hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc-ccccccceeeeeccC--CcEEEEecCCce
Confidence            34567789999999999999999999999999999999998887766666 799999999999999  699999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      ..+.|++++....        +..-....-.+++.+|+||+ .+|.+|..||.|++||+..+.                 
T Consensus       327 w~Fsd~~~g~~lt--------~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~-----------------  380 (506)
T KOG0289|consen  327 WAFSDISSGSQLT--------VVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQT-----------------  380 (506)
T ss_pred             EEEEEccCCcEEE--------EEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCcc-----------------
Confidence            9999999753211        11111122458999999955 999999999999999998876                 


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                              .+...++|..+|..++|+.+ |++|++++.|+.|++||+|..+...++...                    .
T Consensus       381 --------~~a~Fpght~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~n~kt~~l~--------------------~  431 (506)
T KOG0289|consen  381 --------NVAKFPGHTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLKNFKTIQLD--------------------E  431 (506)
T ss_pred             --------ccccCCCCCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhcccceeecc--------------------c
Confidence                    34456679999999999998 899999999999999999998766655321                    1


Q ss_pred             cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccccccccc
Q 004745          248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVAT  327 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  327 (732)
                      ...+.++.|.+.|.+|++++.|=+|++++-.+..-..              ...+..+......+.|....++++   ++
T Consensus       432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~--------------~~~~~~~sg~st~v~Fg~~aq~l~---s~  494 (506)
T KOG0289|consen  432 KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTE--------------IKELADHSGLSTGVRFGEHAQYLA---ST  494 (506)
T ss_pred             cccceeEEEcCCCCeEEeecceeEEEEEeccccccee--------------eehhhhcccccceeeecccceEEe---ec
Confidence            1148999999999999999888888888755422111              112334445667778888888888   88


Q ss_pred             CcchhhHH
Q 004745          328 GLGKCRML  335 (732)
Q Consensus       328 ~~d~~~~l  335 (732)
                      +.|...++
T Consensus       495 smd~~l~~  502 (506)
T KOG0289|consen  495 SMDAILRL  502 (506)
T ss_pred             cchhheEE
Confidence            87776554

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.9e-23  Score=184.96  Aligned_cols=130  Identities=17%  Similarity=0.123  Sum_probs=107.5

Q ss_pred             EEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe-cCCCcEEEE
Q 004745           56 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVVWS  134 (732)
Q Consensus        56 ~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-p~~~~~l~s  134 (732)
                      ++...|.+.|..+...-.  |.+|+||+.|++|+|+.++....       ..++..+.+|.++|..++|. |.-+.+||+
T Consensus         5 ~idt~H~D~IHda~lDyy--gkrlATcsSD~tVkIf~v~~n~~-------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAS   75 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDYY--GKRLATCSSDGTVKIFEVRNNGQ-------SKLLAELTGHSGPVWKVAWAHPKFGTILAS   75 (299)
T ss_pred             ehhhhhhhhhhHhhhhhh--cceeeeecCCccEEEEEEcCCCC-------ceeeeEecCCCCCeeEEeecccccCcEeeE
Confidence            344679999988887776  69999999999999999987543       14578999999999999994 555699999


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEE
Q 004745          135 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYD  213 (732)
Q Consensus       135 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd  213 (732)
                      ++.||.|.||.-..++                       .........|...|++++|.|.+ |-.|++++.||.|.|.+
T Consensus        76 csYDgkVIiWke~~g~-----------------------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~  132 (299)
T KOG1332|consen   76 CSYDGKVIIWKEENGR-----------------------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT  132 (299)
T ss_pred             eecCceEEEEecCCCc-----------------------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEE
Confidence            9999999999987764                       22344556788899999999975 55789999999999999


Q ss_pred             CCCC
Q 004745          214 RRML  217 (732)
Q Consensus       214 ~~~~  217 (732)
                      .+..
T Consensus       133 ~~~~  136 (299)
T KOG1332|consen  133 YDSS  136 (299)
T ss_pred             EcCC
Confidence            8865

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=1.7e-23  Score=201.99  Aligned_cols=229  Identities=19%  Similarity=0.278  Sum_probs=182.1

Q ss_pred             ccccEeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCe-------eEEEEccCCCcCeEEEEEecCCCCCEEE
Q 004745            9 LSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVV   80 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~-------~~~~~~~~h~~~V~~~~~s~~~~g~~l~   80 (732)
                      ..+-..|.||.+.-+.++|++.. -.|++|+.|++|++||+....       ....+ .+|+..|..++|++.. ..+|+
T Consensus       167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~-~~h~~~VeDV~~h~~h-~~lF~  244 (422)
T KOG0264|consen  167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF-SGHEDVVEDVAWHPLH-EDLFG  244 (422)
T ss_pred             CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEe-ecCCcceehhhccccc-hhhhe
Confidence            34556899999988999999854 389999999999999987432       23334 7999999999999986 58999


Q ss_pred             EEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004745           81 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        81 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  160 (732)
                      +++.|+.+.|||+++..        .++.+...+|...|++++|+|.++.+|||||.|++|.+||+|+...         
T Consensus       245 sv~dd~~L~iwD~R~~~--------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---------  307 (422)
T KOG0264|consen  245 SVGDDGKLMIWDTRSNT--------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---------  307 (422)
T ss_pred             eecCCCeEEEEEcCCCC--------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---------
Confidence            99999999999999632        1446778899999999999999999999999999999999998763         


Q ss_pred             ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCC-CCCCcccccccc
Q 004745          161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM-SPPPCVNYFCPM  239 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~  239 (732)
                                     .+....+|...|..+.|+|.....|++++.|+.+.|||+..-...+...... .+|..       
T Consensus       308 ---------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEl-------  365 (422)
T KOG0264|consen  308 ---------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPEL-------  365 (422)
T ss_pred             ---------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcce-------
Confidence                           3455667888999999999988999999999999999997654333211111 11110       


Q ss_pred             ccccCCCccccEEEEEEcCCCCE-EEEEecCCeEEEEECCC
Q 004745          240 HLSEHGRSSLHLTHVTFSPNGEE-VLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       240 ~~~~~~~~~~~i~~l~~sp~g~~-l~~~~~dg~v~iwd~~~  279 (732)
                      .+...||.. .|..+.|+|+..+ +++.+.|+.+.||.+..
T Consensus       366 lF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  366 LFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             eEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            112255665 5999999998875 55567799999999875

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.5e-23  Score=191.08  Aligned_cols=155  Identities=17%  Similarity=0.168  Sum_probs=122.0

Q ss_pred             EEEEEECCCcEEEEEcCCCCCCCC--CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004745           78 LVVSGAGDAEVRLFNLSRFSGRGL--DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  155 (732)
Q Consensus        78 ~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  155 (732)
                      .|+.|+....|.-+++......+.  ......++..+..|..+|++++++   +.++|+||.|.+|+|||+++....   
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~ql---   76 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQL---   76 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhh---
Confidence            467788887777777764331111  112234578889999999999995   489999999999999999987632   


Q ss_pred             CCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccc
Q 004745          156 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  234 (732)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  234 (732)
                                            .....|.+.|+++.|.+.- ...|++|+.||.|.+|+......+..+           
T Consensus        77 ----------------------g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl-----------  123 (362)
T KOG0294|consen   77 ----------------------GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL-----------  123 (362)
T ss_pred             ----------------------cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee-----------
Confidence                                  3334577899999999862 128999999999999999988665554           


Q ss_pred             cccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          235 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                               .+|.+. |+.++++|.|++-++.+.|+.++.||+-.++
T Consensus       124 ---------K~H~~~-Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen  124 ---------KAHKGQ-VTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             ---------cccccc-cceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence                     667774 9999999999999999999999999998865

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.91  E-value=1.3e-23  Score=188.36  Aligned_cols=264  Identities=17%  Similarity=0.199  Sum_probs=205.2

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---   84 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---   84 (732)
                      .++.+.+++||++.|.|++.+-+.++|+||+.|.++++||+.+|+++..+  .-..+|..+.|++.  |++++.+..   
T Consensus        41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~--k~~~~Vk~~~F~~~--gn~~l~~tD~~m  116 (327)
T KOG0643|consen   41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW--KTNSPVKRVDFSFG--GNLILASTDKQM  116 (327)
T ss_pred             CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe--ecCCeeEEEeeccC--CcEEEEEehhhc
Confidence            56788899999999999999999999999999999999999999999998  45678999999999  477766643   


Q ss_pred             --CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004745           85 --DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  162 (732)
Q Consensus        85 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  162 (732)
                        .+.|.++|++.....   ....+|...+..+...++.+.|.|-+ .+|++|.+||.|.+||+++++..          
T Consensus       117 g~~~~v~~fdi~~~~~~---~~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~----------  182 (327)
T KOG0643|consen  117 GYTCFVSVFDIRDDSSD---IDSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKEL----------  182 (327)
T ss_pred             CcceEEEEEEccCChhh---hcccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCcee----------
Confidence              467999999854321   12235677888888999999999955 89999999999999999998632          


Q ss_pred             ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004745          163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  242 (732)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (732)
                                    +.....|...|+.|.++++ ..++++++.|.+-++||.++.+.++++.                  
T Consensus       183 --------------v~s~~~h~~~Ind~q~s~d-~T~FiT~s~Dttakl~D~~tl~v~Kty~------------------  229 (327)
T KOG0643|consen  183 --------------VDSDEEHSSKINDLQFSRD-RTYFITGSKDTTAKLVDVRTLEVLKTYT------------------  229 (327)
T ss_pred             --------------eechhhhccccccccccCC-cceEEecccCccceeeeccceeeEEEee------------------
Confidence                          2223346669999999999 7899999999999999999987665542                  


Q ss_pred             cCCCccccEEEEEEcCCCCEEEEEecCCe--EEEEECCCCCCcceeeec--CCCCceeeeccCCCCccCCCCCCccCCCc
Q 004745          243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEH--VYLMDVNHAGGRAMRYTV--GDASKIMSFTPTLNGLELQPPIHDFLQTN  318 (732)
Q Consensus       243 ~~~~~~~~i~~l~~sp~g~~l~~~~~dg~--v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  318 (732)
                          ...||++.+++|...+++.|+...-  |.-=+.+.++-...++..  .+.      -...++|=.++.+++|+|+|
T Consensus       230 ----te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEE------igrvkGHFGPINsvAfhPdG  299 (327)
T KOG0643|consen  230 ----TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEE------IGRVKGHFGPINSVAFHPDG  299 (327)
T ss_pred             ----ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHH------hccccccccCcceeEECCCC
Confidence                1236999999998888877765322  222222222222111100  000      12567888999999999999


Q ss_pred             cccccccccCcchhhHH
Q 004745          319 IRVRGEVATGLGKCRML  335 (732)
Q Consensus       319 ~~~~~~~~~~~d~~~~l  335 (732)
                      +..+   +++.|+.+++
T Consensus       300 ksYs---SGGEDG~VR~  313 (327)
T KOG0643|consen  300 KSYS---SGGEDGYVRL  313 (327)
T ss_pred             cccc---cCCCCceEEE
Confidence            9999   9999999998

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=5.7e-22  Score=183.13  Aligned_cols=164  Identities=18%  Similarity=0.195  Sum_probs=129.4

Q ss_pred             eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004745           53 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  132 (732)
Q Consensus        53 ~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  132 (732)
                      ..+.+ ..-.+.|+++.|+++  |.++++++.|.++++||...+.          ++.++..+.-.+..+.|.... +.+
T Consensus         6 ~ak~f-~~~~~~i~sl~fs~~--G~~litss~dDsl~LYd~~~g~----------~~~ti~skkyG~~~~~Fth~~-~~~   71 (311)
T KOG1446|consen    6 PAKVF-RETNGKINSLDFSDD--GLLLITSSEDDSLRLYDSLSGK----------QVKTINSKKYGVDLACFTHHS-NTV   71 (311)
T ss_pred             ccccc-ccCCCceeEEEecCC--CCEEEEecCCCeEEEEEcCCCc----------eeeEeecccccccEEEEecCC-ceE
Confidence            33444 345778999999999  6999999999999999998743          367777777788888887744 555


Q ss_pred             EEEeC--CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004745          133 WSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  210 (732)
Q Consensus       133 ~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~  210 (732)
                      +.++.  |.+||.-++.+.+                         .+.-.++|...|.+++.+|- +..+++++.|++||
T Consensus        72 i~sStk~d~tIryLsl~dNk-------------------------ylRYF~GH~~~V~sL~~sP~-~d~FlS~S~D~tvr  125 (311)
T KOG1446|consen   72 IHSSTKEDDTIRYLSLHDNK-------------------------YLRYFPGHKKRVNSLSVSPK-DDTFLSSSLDKTVR  125 (311)
T ss_pred             EEccCCCCCceEEEEeecCc-------------------------eEEEcCCCCceEEEEEecCC-CCeEEecccCCeEE
Confidence            55555  7899999998877                         45556789999999999998 58999999999999


Q ss_pred             EEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +||++..+....+.                   .  .  .-..++|+|+|-++|++.....|++||++.
T Consensus       126 LWDlR~~~cqg~l~-------------------~--~--~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs  171 (311)
T KOG1446|consen  126 LWDLRVKKCQGLLN-------------------L--S--GRPIAAFDPEGLIFALANGSELIKLYDLRS  171 (311)
T ss_pred             eeEecCCCCceEEe-------------------c--C--CCcceeECCCCcEEEEecCCCeEEEEEecc
Confidence            99999654322211                   0  0  123479999999999999888999999998

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.9e-23  Score=216.97  Aligned_cols=224  Identities=19%  Similarity=0.282  Sum_probs=178.7

Q ss_pred             hhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745            5 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus         5 ~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      +.-.-++++.++||.+.|..|.||.+ ++|++++.|.+||||++...+|++.|  .|.+-|+|++|+|.. +++|++|+-
T Consensus       355 f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F--~HndfVTcVaFnPvD-DryFiSGSL  430 (712)
T KOG0283|consen  355 FVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF--SHNDFVTCVAFNPVD-DRYFISGSL  430 (712)
T ss_pred             ccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE--ecCCeeEEEEecccC-CCcEeeccc
Confidence            33445788999999999999999976 48999999999999999999999999  799999999999975 699999999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      ||.|+||++...           .+.....-..-|++++|.|+ ++..+.|+.+|.+++|++...+...          .
T Consensus       431 D~KvRiWsI~d~-----------~Vv~W~Dl~~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~----------~  488 (712)
T KOG0283|consen  431 DGKVRLWSISDK-----------KVVDWNDLRDLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVS----------D  488 (712)
T ss_pred             ccceEEeecCcC-----------eeEeehhhhhhheeEEeccC-CceEEEEEeccEEEEEEccCCeEEE----------e
Confidence            999999999852           24555555689999999996 5999999999999999998765321          0


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                      ..+.+..+.      ...+. .|+++.|.|.....+++.+.|..|||||.+....+.++..                   
T Consensus       489 ~~I~~~~~K------k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG-------------------  542 (712)
T KOG0283|consen  489 FHIRLHNKK------KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG-------------------  542 (712)
T ss_pred             eeEeeccCc------cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc-------------------
Confidence            111111111      11123 7999999998777788889999999999988776655521                   


Q ss_pred             CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      .+....-....|+.||++|++++.|..|+||++...
T Consensus       543 ~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  543 FRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             cccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            111222456789999999999999999999998764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.91  E-value=2.4e-24  Score=204.60  Aligned_cols=253  Identities=21%  Similarity=0.261  Sum_probs=197.7

Q ss_pred             hhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745            5 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus         5 ~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      +..+.+.+.+|.|-.++|+.+.|.++++++++++.|+.+++|++...+...++ .+|++.|+++.|....  ..+++|+.
T Consensus       205 ~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~~--~~vVsgs~  281 (459)
T KOG0288|consen  205 LGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKLSH--SRVVSGSA  281 (459)
T ss_pred             ccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh-cccccceeeehhhccc--cceeeccc
Confidence            44556678899999999999999999999999999999999999999999999 7999999999999874  45999999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      |.+|++||+...  .|        ..+.. -...++.|...+   ..+++|..|+.|++||++.....            
T Consensus       282 DRtiK~WDl~k~--~C--------~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~------------  335 (459)
T KOG0288|consen  282 DRTIKLWDLQKA--YC--------SKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKT------------  335 (459)
T ss_pred             cchhhhhhhhhh--he--------ecccc-ccccccceEecc---eeeeecccccceEEEeccCCcee------------
Confidence            999999999862  22        33322 234566777653   67889999999999999987632            


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                                   ...+. .+.|+++..+++ +..+.+++.|.++.+.|+++.+....+...                 .
T Consensus       336 -------------~sv~~-gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI~~~~sA~-----------------g  383 (459)
T KOG0288|consen  336 -------------RSVPL-GGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEIRQTFSAE-----------------G  383 (459)
T ss_pred             -------------eEeec-CcceeeEeeccC-CeEEeeecCCCceeeeecccccEEEEeecc-----------------c
Confidence                         11111 228999999998 778888899999999999987655443211                 1


Q ss_pred             CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccc
Q 004745          245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE  324 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  324 (732)
                      ......++.+.|||++.|+++|+.||.|+||++.+++...+.......              ..+.+++|.|.|.++.  
T Consensus       384 ~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~--------------~aI~s~~W~~sG~~Ll--  447 (459)
T KOG0288|consen  384 FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN--------------AAITSLSWNPSGSGLL--  447 (459)
T ss_pred             cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC--------------cceEEEEEcCCCchhh--
Confidence            111223889999999999999999999999999998765544332221              2567777888888888  


Q ss_pred             cccCcchhhHH
Q 004745          325 VATGLGKCRML  335 (732)
Q Consensus       325 ~~~~~d~~~~l  335 (732)
                       +++.+....+
T Consensus       448 -sadk~~~v~l  457 (459)
T KOG0288|consen  448 -SADKQKAVTL  457 (459)
T ss_pred             -cccCCcceEe
Confidence             7777777666

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=8.8e-23  Score=198.54  Aligned_cols=452  Identities=15%  Similarity=0.148  Sum_probs=272.1

Q ss_pred             eeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC-------
Q 004745           14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-------   86 (732)
Q Consensus        14 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg-------   86 (732)
                      .++|+.-.. .+-+-|.|..+.-..  +-+.+++.+...+.. + .+|...|.|+..+|+.  -.+++|-.-|       
T Consensus        61 gYRG~dcR~-Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr~-y-~GH~ddikc~~vHPdr--i~vatGQ~ag~~g~~~~  133 (626)
T KOG2106|consen   61 GYRGVDCRN-NLYLLPTGELVYFVA--AVGVLYNWEERSQRH-Y-LGHNDDIKCMAVHPDR--IRVATGQGAGTSGRPLQ  133 (626)
T ss_pred             eecceeeec-eeEEccCccEEEEec--cEEEEEeehhhhccc-c-cCCCCceEEEeecCCc--eeeccCcccccCCCcCC
Confidence            344544333 255667776544332  235566664433322 2 5999999999999983  4566554333       


Q ss_pred             -cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC-cEEEEE--eCCCcEEEEECCCCCCCCCCCCCCccc
Q 004745           87 -EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSA--SEDGTLRQHDFRQGSSCPPAGSSHQEC  162 (732)
Q Consensus        87 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~  162 (732)
                       .+++||..+.+          -++.+......|++++|++.++ .++...  +.+..+.+||...+.....        
T Consensus       134 phvriWdsv~L~----------TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~--------  195 (626)
T KOG2106|consen  134 PHVRIWDSVTLS----------TLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP--------  195 (626)
T ss_pred             Ceeeecccccce----------eeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc--------
Confidence             49999966422          2555556677899999998544 444332  4455788999988763311        


Q ss_pred             ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004745          163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  242 (732)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (732)
                                       ....+..|..+.|.|.+.+++++++ .+.+.+|+++.+...++..          .|      
T Consensus       196 -----------------vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~----------~f------  241 (626)
T KOG2106|consen  196 -----------------VKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQG----------IF------  241 (626)
T ss_pred             -----------------ceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEee----------cc------
Confidence                             1112336788999999887777776 5789999998775433221          11      


Q ss_pred             cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004745          243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       243 ~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (732)
                       .++....|.+++|.++|. +++|..+|.|.||+..+.+.....+                .|+..+.++....+|..+ 
T Consensus       242 -ek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~----------------aH~ggv~~L~~lr~Gtll-  302 (626)
T KOG2106|consen  242 -EKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH----------------AHDGGVFSLCMLRDGTLL-  302 (626)
T ss_pred             -ccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee----------------ecCCceEEEEEecCccEe-
Confidence             112223699999999998 8999999999999986633222211                444555566666666555 


Q ss_pred             cccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHH
Q 004745          323 GEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNA  402 (732)
Q Consensus       323 ~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  402 (732)
                         ++..|+.+.+     |+-.-.+    .        +..  . -|+..          +.+|                
T Consensus       303 ---SGgKDRki~~-----Wd~~y~k----~--------r~~--e-lPe~~----------G~iR----------------  333 (626)
T KOG2106|consen  303 ---SGGKDRKIIL-----WDDNYRK----L--------RET--E-LPEQF----------GPIR----------------  333 (626)
T ss_pred             ---ecCccceEEe-----ccccccc----c--------ccc--c-Cchhc----------CCee----------------
Confidence               4566666655     4411000    0        000  0 00000          0000                


Q ss_pred             hcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcc
Q 004745          403 RRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRV  482 (732)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~  482 (732)
                                                       .++  +.           +..|..+-..+.+..-.      .+++ +
T Consensus       334 ---------------------------------tv~--e~-----------~~di~vGTtrN~iL~Gt------~~~~-f  360 (626)
T KOG2106|consen  334 ---------------------------------TVA--EG-----------KGDILVGTTRNFILQGT------LENG-F  360 (626)
T ss_pred             ---------------------------------EEe--cC-----------CCcEEEeeccceEEEee------ecCC-c
Confidence                                             000  00           00000000000000000      0000 0


Q ss_pred             cccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCCccccccCCC
Q 004745          483 LSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANG  560 (732)
Q Consensus       483 ~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d  560 (732)
                      .  .+...|.+.  .++..|+-                  ..+++.++|+.+.+|+ +.++.. ...-.+++.++.|+|-
T Consensus       361 ~--~~v~gh~delwgla~hps~------------------~q~~T~gqdk~v~lW~-~~k~~w-t~~~~d~~~~~~fhps  418 (626)
T KOG2106|consen  361 T--LTVQGHGDELWGLATHPSK------------------NQLLTCGQDKHVRLWN-DHKLEW-TKIIEDPAECADFHPS  418 (626)
T ss_pred             e--EEEEecccceeeEEcCCCh------------------hheeeccCcceEEEcc-CCceeE-EEEecCceeEeeccCc
Confidence            0  012334444  56667776                  8899999999999999 344433 2344677889999999


Q ss_pred             CCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcC-cccEEEEEec-Cc
Q 004745          561 SSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQ-TGRLIKMLLG-DE  638 (732)
Q Consensus       561 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~-tg~~~~~l~g-H~  638 (732)
                      | .+|.++..+-=-+.+.++    .....-|+. ..++..+.| +|||.+||.||.|+.|+||-+. +|+.+..+.- |-
T Consensus       419 g-~va~Gt~~G~w~V~d~e~----~~lv~~~~d-~~~ls~v~y-sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g  491 (626)
T KOG2106|consen  419 G-VVAVGTATGRWFVLDTET----QDLVTIHTD-NEQLSVVRY-SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG  491 (626)
T ss_pred             c-eEEEeeccceEEEEeccc----ceeEEEEec-CCceEEEEE-cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence            9 888885443323344333    233334443 333555555 9999999999999999999986 4555555544 34


Q ss_pred             ccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCcc
Q 004745          639 AVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSI  674 (732)
Q Consensus       639 ~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~  674 (732)
                      ..|+.|.||+|+++|.|-|.|--|-.|.....+...
T Consensus       492 s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~t  527 (626)
T KOG2106|consen  492 SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQIT  527 (626)
T ss_pred             ceeEEeeecCCCceEEeccCceEEEEEccccCcccc
Confidence            889999999999999999999999999666555543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=3.3e-22  Score=198.52  Aligned_cols=217  Identities=18%  Similarity=0.247  Sum_probs=157.3

Q ss_pred             ccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004745           11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL   90 (732)
Q Consensus        11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v   90 (732)
                      +...++||++.|.+|...|.|.+||+|+.||+||||.+.+|.|+.++  ...+.|.|++|+|..+ ..++..+....+.|
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~--~~d~~I~~vaw~P~~~-~~vLAvA~~~~~~i  468 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV--QFDSEIRSVAWNPLSD-LCVLAVAVGECVLI  468 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE--eecceeEEEEecCCCC-ceeEEEEecCceEE
Confidence            44568899999999999999999999999999999999999999998  3567899999999863 44444444455666


Q ss_pred             EEcCCCCCC-------CC--CCCC------------------CCCceeeccccCceeEEEEecCCCcEEEEEeCC---Cc
Q 004745           91 FNLSRFSGR-------GL--DDNA------------------ITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GT  140 (732)
Q Consensus        91 wd~~~~~~~-------~~--~~~~------------------~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d---g~  140 (732)
                      -+..-+...       .+  ..+.                  ..-+.....|...|+.+.|+..| .+|++...+   ..
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~  547 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKS  547 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCCcce
Confidence            655432100       00  0000                  01123445688899999999954 899887654   46


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCC
Q 004745          141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  220 (732)
Q Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~  220 (732)
                      |.|.++......                         .......+.|.++.|+|. ..+|++++. ..|||||+.....+
T Consensus       548 VliHQLSK~~sQ-------------------------~PF~kskG~vq~v~FHPs-~p~lfVaTq-~~vRiYdL~kqelv  600 (733)
T KOG0650|consen  548 VLIHQLSKRKSQ-------------------------SPFRKSKGLVQRVKFHPS-KPYLFVATQ-RSVRIYDLSKQELV  600 (733)
T ss_pred             EEEEeccccccc-------------------------CchhhcCCceeEEEecCC-CceEEEEec-cceEEEehhHHHHH
Confidence            888888776521                         122234457889999998 556666664 57999999875444


Q ss_pred             cccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          221 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +++.                   .+  ..+|..++++|.|..|++|+.|+.++.||+.-
T Consensus       601 KkL~-------------------tg--~kwiS~msihp~GDnli~gs~d~k~~WfDldl  638 (733)
T KOG0650|consen  601 KKLL-------------------TG--SKWISSMSIHPNGDNLILGSYDKKMCWFDLDL  638 (733)
T ss_pred             HHHh-------------------cC--CeeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence            3331                   11  12699999999999999999999999999876

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=3.3e-22  Score=183.19  Aligned_cols=192  Identities=14%  Similarity=0.160  Sum_probs=131.8

Q ss_pred             EEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe-cCCCcEEEE
Q 004745           56 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVVWS  134 (732)
Q Consensus        56 ~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-p~~~~~l~s  134 (732)
                      .+..+|..-|.++.|.+.  |+.+++|+.|++|+|||.+..++.      +.+....+.|.+.|..+.|. |.-++.+|+
T Consensus         7 pi~s~h~DlihdVs~D~~--GRRmAtCSsDq~vkI~d~~~~s~~------W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~   78 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSFDFY--GRRMATCSSDQTVKIWDSTSDSGT------WSCTSSWRAHDGSIWRVVWAHPEFGQVVAT   78 (361)
T ss_pred             ccccCCcceeeeeeeccc--CceeeeccCCCcEEEEeccCCCCc------eEEeeeEEecCCcEEEEEecCccccceEEE
Confidence            444689999999999999  699999999999999998765443      35677889999999999995 455689999


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEE
Q 004745          135 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYD  213 (732)
Q Consensus       135 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd  213 (732)
                      ++.|+++.||.-......     .+.           ...............|+++.|.|.. |-.||+++.||.||||+
T Consensus        79 cS~Drtv~iWEE~~~~~~-----~~~-----------~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYE  142 (361)
T KOG2445|consen   79 CSYDRTVSIWEEQEKSEE-----AHG-----------RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYE  142 (361)
T ss_pred             EecCCceeeeeecccccc-----ccc-----------ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEe
Confidence            999999999986422210     000           0111223344556689999999964 56799999999999999


Q ss_pred             CCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC---CCEEEEEecC-----CeEEEEECCC
Q 004745          214 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSG-----EHVYLMDVNH  279 (732)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~---g~~l~~~~~d-----g~v~iwd~~~  279 (732)
                      ......+..+.........+       . +.+....+..|+.|+|.   .++|++|+.+     +.++||....
T Consensus       143 A~dp~nLs~W~Lq~Ei~~~~-------~-pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e  208 (361)
T KOG2445|consen  143 APDPMNLSQWTLQHEIQNVI-------D-PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE  208 (361)
T ss_pred             cCCccccccchhhhhhhhcc-------C-CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence            87665554443221110000       0 01222225778888873   4667777665     3566665444

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=3.5e-23  Score=199.63  Aligned_cols=243  Identities=16%  Similarity=0.192  Sum_probs=190.3

Q ss_pred             eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004745           16 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR   95 (732)
Q Consensus        16 ~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~   95 (732)
                      ++|.+.|.+++.|+||++||+|+.|..|.||+..+.+.++.+ .+|.+.|.+++|-...  ..+++++.|+.|++|++..
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecCc--cceeeeecCCceEEEehhH
Confidence            489999999999999999999999999999999999999998 8999999999999875  7899999999999999985


Q ss_pred             CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004745           96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  175 (732)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (732)
                      .          ..+.++.+|.+.|.+|.... -.+.+-.|+.|+++++|++......             +         
T Consensus       276 ~----------s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesql-------------i---------  322 (479)
T KOG0299|consen  276 L----------SYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQL-------------I---------  322 (479)
T ss_pred             h----------HHHHHHhCCccceeeechhc-ccceEEeccccceeEEEecccccee-------------e---------
Confidence            3          34788999999999998776 3366666779999999999554321             1         


Q ss_pred             cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEE
Q 004745          176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  255 (732)
Q Consensus       176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  255 (732)
                          ..++...+-|++|-.+  ..+++|+.+|.|.+|++.+.+++...........       .. ...++ ..+|++++
T Consensus       323 ----frg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~-------~~-~~~~~-~~Witsla  387 (479)
T KOG0299|consen  323 ----FRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP-------EL-DPVNG-NFWITSLA  387 (479)
T ss_pred             ----eeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeeccccccC-------Cc-ccccc-ccceeeeE
Confidence                1234558889999875  5899999999999999999988876543321110       00 00111 24899999


Q ss_pred             EcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004745          256 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       256 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (732)
                      ..|...++++|+.+|.|++|-+..+-.......            .+ ....-|++++|+++|+.+.
T Consensus       388 ~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~------------~l-s~~GfVNsl~f~~sgk~iv  441 (479)
T KOG0299|consen  388 VIPGSDLLASGSWSGCVRLWKIEDGLRAINLLY------------SL-SLVGFVNSLAFSNSGKRIV  441 (479)
T ss_pred             ecccCceEEecCCCCceEEEEecCCccccceee------------ec-ccccEEEEEEEccCCCEEE
Confidence            999999999999999999999998643222111            01 1334577788899988554

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=4.3e-23  Score=206.85  Aligned_cols=219  Identities=21%  Similarity=0.260  Sum_probs=183.2

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eeEEEEccCCCcCeEEEEE-ecCCCCCEEEEEECCCcE
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKF-VPETSDELVVSGAGDAEV   88 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~--~~~~~~~~~h~~~V~~~~~-s~~~~g~~l~s~~~dg~i   88 (732)
                      +..++.|.+.|+.++...+|+.|+++|.|-+|++|+...+  -+..++ ..|+.-|.|+++ .++  ..+++||+-|+.|
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti-r~H~DYVkcla~~ak~--~~lvaSgGLD~~I  142 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI-RTHKDYVKCLAYIAKN--NELVASGGLDRKI  142 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh-hcccchheeeeecccC--ceeEEecCCCccE
Confidence            5667889999999999999999999999999999999877  577777 789999999999 666  4899999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeec-cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      ++||+.++........+......+. ++..+|++++.++.+ ..|++|+..+-|++||.++.+.                
T Consensus       143 flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~k----------------  205 (735)
T KOG0308|consen  143 FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKK----------------  205 (735)
T ss_pred             EEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccc----------------
Confidence            9999997643222222223344444 899999999999954 8999999999999999999873                


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                               +....+|...|..+-.+++ |..++++++||+|++||+...             +|+.++       ..|.
T Consensus       206 ---------imkLrGHTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQ-------------rCl~T~-------~vH~  255 (735)
T KOG0308|consen  206 ---------IMKLRGHTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQ-------------RCLATY-------IVHK  255 (735)
T ss_pred             ---------eeeeeccccceEEEEEcCC-CCeEeecCCCceEEeeecccc-------------ceeeeE-------Eecc
Confidence                     2334478889999999999 899999999999999999876             454444       5576


Q ss_pred             cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      .+ |+++..+|+=..+++|+.||.|+.=|+++..
T Consensus       256 e~-VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  256 EG-VWALQSSPSFTHVYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             Cc-eEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence            64 9999999999999999999999999999853

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=1.5e-22  Score=196.61  Aligned_cols=212  Identities=18%  Similarity=0.283  Sum_probs=166.5

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---eEEEEc-cCCCcCeEEEEEecCCCCCEEEEE
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIE-TGHSANVFCTKFVPETSDELVVSG   82 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~---~~~~~~-~~h~~~V~~~~~s~~~~g~~l~s~   82 (732)
                      +..+++++| .|..-|.++++|...+++.||+. |.|+|||+....   .+..+. ..-.+-|.++...|+  |+.|++|
T Consensus       408 rharq~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd--grtLivG  483 (705)
T KOG0639|consen  408 RHARQINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD--GRTLIVG  483 (705)
T ss_pred             chHHhhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC--CceEEec
Confidence            455677777 48999999999999999999986 789999987432   222220 124567899999999  5999999


Q ss_pred             ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004745           83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  162 (732)
Q Consensus        83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  162 (732)
                      +.-.++.|||+..+....        ...+..-.-...+++.+||. ++.++|..||.|.|||+.+..            
T Consensus       484 GeastlsiWDLAapTpri--------kaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~------------  542 (705)
T KOG0639|consen  484 GEASTLSIWDLAAPTPRI--------KAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQT------------  542 (705)
T ss_pred             cccceeeeeeccCCCcch--------hhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccce------------
Confidence            999999999999765332        23333334567889999955 888899999999999998765            


Q ss_pred             ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004745          163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  242 (732)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (732)
                                   .+....+|...+.||.++++ |..|-+|+-|++||.||++.++++...                   
T Consensus       543 -------------~VrqfqGhtDGascIdis~d-GtklWTGGlDntvRcWDlregrqlqqh-------------------  589 (705)
T KOG0639|consen  543 -------------LVRQFQGHTDGASCIDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQH-------------------  589 (705)
T ss_pred             -------------eeecccCCCCCceeEEecCC-CceeecCCCccceeehhhhhhhhhhhh-------------------
Confidence                         34556788889999999999 889999999999999999998765432                   


Q ss_pred             cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       243 ~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                         .....|.++..+|++.+|++|-.++.|.|-....
T Consensus       590 ---dF~SQIfSLg~cP~~dWlavGMens~vevlh~sk  623 (705)
T KOG0639|consen  590 ---DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK  623 (705)
T ss_pred             ---hhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence               1122599999999999999999988887765544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.8e-22  Score=177.63  Aligned_cols=221  Identities=18%  Similarity=0.195  Sum_probs=174.9

Q ss_pred             cccEeeeccCCceeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745           10 SQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      +++.+|+||.+||..++|..  -|.+||++++||.|.||.-.+++.  .+.. ..|...|++++|.|.+.|-.|++++.|
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVNsV~wapheygl~LacasSD  125 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH-AAHSASVNSVAWAPHEYGLLLACASSD  125 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-hhhcccceeecccccccceEEEEeeCC
Confidence            67889999999999999976  799999999999999999887743  3344 579999999999999878899999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC---C----------CcEEEEEeCCCcEEEEECCCCCCC
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---N----------PHVVWSASEDGTLRQHDFRQGSSC  152 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~----------~~~l~s~s~dg~i~vwd~~~~~~~  152 (732)
                      |.|.|.+.+...+-       .......+|.-.|+++.|.|.   +          .+.|++|+.|..|+||+....+-.
T Consensus       126 G~vsvl~~~~~g~w-------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~  198 (299)
T KOG1332|consen  126 GKVSVLTYDSSGGW-------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK  198 (299)
T ss_pred             CcEEEEEEcCCCCc-------cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh
Confidence            99999999865222       224567789999999999984   1          146999999999999999876411


Q ss_pred             CCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC---CCEEEEEeCCCeEEEEECCCCCCCcccccCCCC
Q 004745          153 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  229 (732)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~  229 (732)
                                             .-.++.+|...|..++|.|.-   ...|++++.||+|.||-.+...  .....    
T Consensus       199 -----------------------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~--e~wk~----  249 (299)
T KOG1332|consen  199 -----------------------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY--EPWKK----  249 (299)
T ss_pred             -----------------------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc--Ccccc----
Confidence                                   122356788899999999974   3479999999999999876321  11100    


Q ss_pred             CCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          230 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                       ..+.           .....+..+.|++.|++|++++.|+.|.+|.-..
T Consensus       250 -tll~-----------~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  250 -TLLE-----------EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             -cccc-----------cCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence             0000           0122599999999999999999999999997554

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=1.5e-21  Score=177.46  Aligned_cols=222  Identities=15%  Similarity=0.261  Sum_probs=167.5

Q ss_pred             eeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe------------eE--EEEccCCCcCeEEEEEecCCCCCEE
Q 004745           15 LEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK------------LL--HSIETGHSANVFCTKFVPETSDELV   79 (732)
Q Consensus        15 l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~------------~~--~~~~~~h~~~V~~~~~s~~~~g~~l   79 (732)
                      -+.|.+.|+++...+ .|+++++|+.||.|.|||+++..            ++  ..-..+|+-.|..+.|-|-. ..++
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D-tGmF  117 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID-TGMF  117 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec-Ccee
Confidence            346999999999998 68999999999999999997532            11  11124788999999999974 3689


Q ss_pred             EEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC--cEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004745           80 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAGS  157 (732)
Q Consensus        80 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~  157 (732)
                      .+++.|.+++|||..+.+.          ...++ -.+.|.+-+++|-..  .++|+|..|-.|++-|+..+..      
T Consensus       118 tssSFDhtlKVWDtnTlQ~----------a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~------  180 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQE----------AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF------  180 (397)
T ss_pred             ecccccceEEEeeccccee----------eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc------
Confidence            9999999999999998542          22222 356777778877332  4778888888999999998862      


Q ss_pred             CCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC-CCCcccccCC-CCCCcccc
Q 004745          158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRM-SPPPCVNY  235 (732)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~-~~~~~~~~~~-~~~~~~~~  235 (732)
                                         -..+.+|...|.++.|+|.....|++|+.||.||+||++.. ..+..+.... ..++.++ 
T Consensus       181 -------------------sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-  240 (397)
T KOG4283|consen  181 -------------------SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-  240 (397)
T ss_pred             -------------------eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-
Confidence                               23456788899999999997778999999999999999865 2222222111 1111111 


Q ss_pred             ccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                            ....|.+ .+++++|..++.++++.+.|..+++|+..++.
T Consensus       241 ------~n~ah~g-kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  241 ------TNTAHYG-KVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ------ccccccc-eeeeeeecccchhhhhccCccceEEeecccCc
Confidence                  1133444 69999999999999999999999999998854

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=4.8e-23  Score=210.61  Aligned_cols=222  Identities=16%  Similarity=0.274  Sum_probs=176.7

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCcEEEEeCCC---CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           21 CVNAISWNS-KGSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        21 ~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~---~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      .+..+.|+. +.++|||++..|.|.+||+..   .+.+..| ..|+..|+++.|++.. ..+|+||+.||+|++||++..
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f-~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF-NEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh-hhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecc
Confidence            344567774 567999999999999999987   5555666 7899999999999987 589999999999999999975


Q ss_pred             CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004745           97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  176 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (732)
                      +.          ..++.+....|..+.|+|..++.|+++.+.|.+.+||++....+                        
T Consensus       167 ~S----------~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------------  212 (839)
T KOG0269|consen  167 KS----------KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------------  212 (839)
T ss_pred             cc----------cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH------------------------
Confidence            43          56677788999999999988899999999999999999998743                        


Q ss_pred             ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004745          177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  256 (732)
Q Consensus       177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  256 (732)
                      ......|.++|.++.|+|+ +.+|||||.|++|+|||+.+.+....        .++            +...++..|.|
T Consensus       213 ~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~--------~tI------------nTiapv~rVkW  271 (839)
T KOG0269|consen  213 EKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPK--------HTI------------NTIAPVGRVKW  271 (839)
T ss_pred             HHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCccce--------eEE------------eecceeeeeee
Confidence            3344568889999999997 88999999999999999986543211        111            22336999999


Q ss_pred             cCCCCE-EEEEec--CCeEEEEECCCCCCcceee-ecCCCCceeeec
Q 004745          257 SPNGEE-VLLSYS--GEHVYLMDVNHAGGRAMRY-TVGDASKIMSFT  299 (732)
Q Consensus       257 sp~g~~-l~~~~~--dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~  299 (732)
                      -|..++ |++++.  |-.|+|||++.+-.+...+ .|.+....++|.
T Consensus       272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~  318 (839)
T KOG0269|consen  272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD  318 (839)
T ss_pred             ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc
Confidence            998765 444443  7899999999977666544 455555555554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=9e-21  Score=193.59  Aligned_cols=186  Identities=11%  Similarity=0.163  Sum_probs=131.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-EEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004745           31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPS  109 (732)
Q Consensus        31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  109 (732)
                      +..+++++.|+.|++||+.+++.+..+ ..+. .+.+++|+|++  ..+ ++++.++.|++||+.++..          +
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~~-~~~~l~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~----------~   66 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVGQ-RPRGITLSKDG--KLLYVCASDSDTIQVIDLATGEV----------I   66 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEE-ECCC-CCCceEECCCC--CEEEEEECCCCeEEEEECCCCcE----------E
Confidence            357889999999999999999988888 4443 46789999994  655 6677889999999986421          3


Q ss_pred             eeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEE
Q 004745          110 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  189 (732)
Q Consensus       110 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  189 (732)
                      ..+..+. .+..++|+|++..++++++.++.|++||+.+.+..              ..+.            ....+.+
T Consensus        67 ~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~--------------~~~~------------~~~~~~~  119 (300)
T TIGR03866        67 GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVL--------------AEIP------------VGVEPEG  119 (300)
T ss_pred             EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE--------------eEee------------CCCCcce
Confidence            3344333 35678999976445556667899999999875421              0000            0113567


Q ss_pred             EEecCCCCCEEEEEeCCC-eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe-
Q 004745          190 CDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-  267 (732)
Q Consensus       190 i~~~~~~~~~l~tg~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-  267 (732)
                      ++|+|+ +.+++++..++ .+.+||.++.+.+....                   .+  . .+..++|+|+|++|++++ 
T Consensus       120 ~~~~~d-g~~l~~~~~~~~~~~~~d~~~~~~~~~~~-------------------~~--~-~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866       120 MAVSPD-GKIVVNTSETTNMAHFIDTKTYEIVDNVL-------------------VD--Q-RPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             EEECCC-CCEEEEEecCCCeEEEEeCCCCeEEEEEE-------------------cC--C-CccEEEECCCCCEEEEEcC
Confidence            999998 77888887764 57778987654322110                   01  1 256789999999886655 


Q ss_pred             cCCeEEEEECCCC
Q 004745          268 SGEHVYLMDVNHA  280 (732)
Q Consensus       268 ~dg~v~iwd~~~~  280 (732)
                      .++.|++||+.++
T Consensus       177 ~~~~v~i~d~~~~  189 (300)
T TIGR03866       177 IGGTVSVIDVATR  189 (300)
T ss_pred             CCCEEEEEEcCcc
Confidence            5899999999874

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=4.7e-22  Score=192.33  Aligned_cols=244  Identities=19%  Similarity=0.317  Sum_probs=185.6

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      .++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+ .+|-..|+|+.|+.+  |.+|+||+.||.|.+|.+...-.
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~d--gs~iiTgskDg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDD--GSHIITGSKDGAVLVWLLTDLVS  157 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCC--CcEEEecCCCccEEEEEEEeecc
Confidence            578999999999999999989999999999999999988 799999999999999  59999999999999998864211


Q ss_pred             CCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004745           99 RGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  177 (732)
Q Consensus        99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (732)
                      .. +.....+++.+..|+-+|+++...+.+ ..+++|+|.|.++++||+..+..+.              .        +
T Consensus       158 a~-~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl--------------t--------i  214 (476)
T KOG0646|consen  158 AD-NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL--------------T--------I  214 (476)
T ss_pred             cc-cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE--------------E--------E
Confidence            11 111347789999999999999988742 3588999999999999999886431              0        1


Q ss_pred             cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc--c-ccCCCCCCccccccccccccCCCcc-ccEEE
Q 004745          178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS--C-QKRMSPPPCVNYFCPMHLSEHGRSS-LHLTH  253 (732)
Q Consensus       178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~  253 (732)
                          .....+.+++.+|. +..+++|+.+|.|.+.++........  . +........++.+       .||.+ .+|+|
T Consensus       215 ----~fp~si~av~lDpa-e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-------~Gh~~~~~ITc  282 (476)
T KOG0646|consen  215 ----TFPSSIKAVALDPA-ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-------VGHENESAITC  282 (476)
T ss_pred             ----ecCCcceeEEEccc-ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee-------ccccCCcceeE
Confidence                12237899999998 78999999999999999876542110  0 0000001111111       45554 46999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeecc
Q 004745          254 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  300 (732)
Q Consensus       254 l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  300 (732)
                      ++++-||..|++|+.||+|+|||+.+.+....+.....++..+.+.|
T Consensus       283 Lais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  283 LAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             EEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence            99999999999999999999999998654444443445555555544

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1e-21  Score=189.99  Aligned_cols=196  Identities=15%  Similarity=0.142  Sum_probs=152.5

Q ss_pred             CEEEEEe-CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce
Q 004745           32 SLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  110 (732)
Q Consensus        32 ~~lasg~-~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  110 (732)
                      .+++++. ....|.+|.+......... .--.++|.|++-+|.  |.+|+.|...|.|++|.+.++          ..+.
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~-~v~Pg~v~al~s~n~--G~~l~ag~i~g~lYlWelssG----------~LL~  117 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQY-IVLPGPVHALASSNL--GYFLLAGTISGNLYLWELSSG----------ILLN  117 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhh-cccccceeeeecCCC--ceEEEeecccCcEEEEEeccc----------cHHH
Confidence            3566554 4567899998766554422 245688999999999  588888889999999999975          3377


Q ss_pred             eeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEE
Q 004745          111 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  190 (732)
Q Consensus       111 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  190 (732)
                      .+.+|-..|+++.|+-++ .+|+|||.||.|.+|.+..--..                .......++....+|.-+|+++
T Consensus       118 v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a----------------~~~~~~~p~~~f~~HtlsITDl  180 (476)
T KOG0646|consen  118 VLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSA----------------DNDHSVKPLHIFSDHTLSITDL  180 (476)
T ss_pred             HHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeeccc----------------ccCCCccceeeeccCcceeEEE
Confidence            889999999999999854 89999999999999998653211                1111233455566788899999


Q ss_pred             EecCCC-CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC
Q 004745          191 DISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG  269 (732)
Q Consensus       191 ~~~~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d  269 (732)
                      ...+.+ ..++++++.|.++++||+..+..+.++..                      ..++.+++++|-++.+++|+.+
T Consensus       181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f----------------------p~si~av~lDpae~~~yiGt~~  238 (476)
T KOG0646|consen  181 QIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF----------------------PSSIKAVALDPAERVVYIGTEE  238 (476)
T ss_pred             EecCCCccceEEEecCCceEEEEEeccceeeEEEec----------------------CCcceeEEEcccccEEEecCCc
Confidence            887642 35899999999999999999876654421                      1259999999999999999999


Q ss_pred             CeEEEEECCC
Q 004745          270 EHVYLMDVNH  279 (732)
Q Consensus       270 g~v~iwd~~~  279 (732)
                      |.|.+.++..
T Consensus       239 G~I~~~~~~~  248 (476)
T KOG0646|consen  239 GKIFQNLLFK  248 (476)
T ss_pred             ceEEeeehhc
Confidence            9999998876

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.2e-21  Score=182.84  Aligned_cols=174  Identities=21%  Similarity=0.343  Sum_probs=137.7

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC------CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------SRKLLHSIETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~------~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      -..+-+.+|.+.|+++.|+.++++||+|+.|..++||++.      +.+.+......|...|.|++|...  ..++++|.
T Consensus        47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~--N~~~~SG~  124 (609)
T KOG4227|consen   47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE--NRFLYSGE  124 (609)
T ss_pred             hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC--CeeEecCC
Confidence            3455677999999999999999999999999999999975      345666665578899999999987  48999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeec--cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      .+++|...|+++.+.          +..+.  ...+.|..+..+|.+ +.|++.+.++.|.+||.+.......       
T Consensus       125 ~~~~VI~HDiEt~qs----------i~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~-------  186 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQS----------IYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPIS-------  186 (609)
T ss_pred             CcceeEeeeccccee----------eeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCc-------
Confidence            999999999997432          22222  223489999999975 8999999999999999988763211       


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                                     ...+.......+.+.|+|..+.+|++.+..+.+-+||++..+
T Consensus       187 ---------------~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  187 ---------------LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             ---------------eeeecCCCccceeeeecCCCceeEEeccccCCCCceeecccc
Confidence                           111112233667889999988999999999999999998643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.89  E-value=1.8e-21  Score=196.89  Aligned_cols=160  Identities=15%  Similarity=0.186  Sum_probs=126.0

Q ss_pred             EEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeE-EEEecCCCcEE
Q 004745           54 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK-LAVEVGNPHVV  132 (732)
Q Consensus        54 ~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~p~~~~~l  132 (732)
                      .+.+ .+|...|..+++.+.   ..+++++.||++++|+-....-        .....+.+|.+-|.. +++.+.+.-.+
T Consensus         7 s~~l-~gH~~DVr~v~~~~~---~~i~s~sRd~t~~vw~~~~~~~--------l~~~~~~~~~g~i~~~i~y~e~~~~~l   74 (745)
T KOG0301|consen    7 SHEL-EGHKSDVRAVAVTDG---VCIISGSRDGTVKVWAKKGKQY--------LETHAFEGPKGFIANSICYAESDKGRL   74 (745)
T ss_pred             EEEe-ccCccchheeEecCC---eEEeecCCCCceeeeeccCccc--------ccceecccCcceeeccceeccccCcce
Confidence            3445 799999999998876   6899999999999999864322        234667778877777 88876444568


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004745          133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  212 (732)
Q Consensus       133 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw  212 (732)
                      ++|+.|.+|.+|.+.+..                         ++....+|...|.+++...+ +. +++|+.|.++++|
T Consensus        75 ~~g~~D~~i~v~~~~~~~-------------------------P~~~LkgH~snVC~ls~~~~-~~-~iSgSWD~TakvW  127 (745)
T KOG0301|consen   75 VVGGMDTTIIVFKLSQAE-------------------------PLYTLKGHKSNVCSLSIGED-GT-LISGSWDSTAKVW  127 (745)
T ss_pred             EeecccceEEEEecCCCC-------------------------chhhhhccccceeeeecCCc-Cc-eEecccccceEEe
Confidence            899999999999988776                         45566788889999987776 44 9999999999999


Q ss_pred             ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEE
Q 004745          213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD  276 (732)
Q Consensus       213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd  276 (732)
                      -.....  ..+                    .+|.. .|+++++-|++ .+++|+.|.+|++|.
T Consensus       128 ~~~~l~--~~l--------------------~gH~a-sVWAv~~l~e~-~~vTgsaDKtIklWk  167 (745)
T KOG0301|consen  128 RIGELV--YSL--------------------QGHTA-SVWAVASLPEN-TYVTGSADKTIKLWK  167 (745)
T ss_pred             cchhhh--ccc--------------------CCcch-heeeeeecCCC-cEEeccCcceeeecc
Confidence            775432  111                    67776 59999999988 689999999999994

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.88  E-value=1.9e-21  Score=207.34  Aligned_cols=237  Identities=20%  Similarity=0.307  Sum_probs=182.4

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC------------------CeeEEEEccCCCcCeEEEEEe
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFV   71 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~------------------~~~~~~~~~~h~~~V~~~~~s   71 (732)
                      +.+.++..|.+.|+|+.|+|||++||+|++|+.|.||+...                  .+++..+ .+|+..|..++|+
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWS  138 (942)
T ss_pred             hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCccceeccC
Confidence            45667788999999999999999999999999999998762                  1256666 7999999999999


Q ss_pred             cCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004745           72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  151 (732)
Q Consensus        72 ~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~  151 (732)
                      |+  +.+|++++.|++|.|||..+.          +.+..+++|...|..+.|.|-+ ++||+-+.|++|++|++.+-..
T Consensus       139 p~--~~~lvS~s~DnsViiwn~~tF----------~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i  205 (942)
T KOG0973|consen  139 PD--DSLLVSVSLDNSVIIWNAKTF----------ELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGI  205 (942)
T ss_pred             CC--ccEEEEecccceEEEEccccc----------eeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEccccee
Confidence            98  599999999999999999985          3478999999999999999955 9999999999999999766322


Q ss_pred             CCCC---CC------------CCcc------------cceEEeeccCCccccccCCCCCccceEEEEecCC------C--
Q 004745          152 CPPA---GS------------SHQE------------CRNILLDLRCGAKRSLADPPKQTLSLKSCDISST------R--  196 (732)
Q Consensus       152 ~~~~---~~------------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~------~--  196 (732)
                      ...+   +.            -.++            ....+--++.+....-....+|..++.++.|+|.      .  
T Consensus       206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng  285 (942)
T KOG0973|consen  206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNG  285 (942)
T ss_pred             eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccC
Confidence            1000   00            0000            0001111112233334456788999999999873      0  


Q ss_pred             ----CC----EEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec
Q 004745          197 ----PH----LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  268 (732)
Q Consensus       197 ----~~----~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~  268 (732)
                          ++    .+|+|+.|++|.||.....+++....                    .-.+..|..++|+|||-.|++++.
T Consensus       286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~--------------------~lf~~SI~DmsWspdG~~LfacS~  345 (942)
T KOG0973|consen  286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH--------------------NLFNKSIVDMSWSPDGFSLFACSL  345 (942)
T ss_pred             CccCCCcceEEEEEecCCccEEEEecCCCCchhhhh--------------------hhhcCceeeeeEcCCCCeEEEEec
Confidence                11    68899999999999988777654431                    111225999999999999999999


Q ss_pred             CCeEEEEECCCC
Q 004745          269 GEHVYLMDVNHA  280 (732)
Q Consensus       269 dg~v~iwd~~~~  280 (732)
                      ||+|.++.+...
T Consensus       346 DGtV~~i~Fee~  357 (942)
T KOG0973|consen  346 DGTVALIHFEEK  357 (942)
T ss_pred             CCeEEEEEcchH
Confidence            999999998873

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=5.4e-21  Score=184.50  Aligned_cols=202  Identities=15%  Similarity=0.179  Sum_probs=158.5

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeeEEEEccCCCcCeEEEEEecCCCCC-EEEEEECCCcEEEEEcCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSR   95 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~--~~~~~~~~~~h~~~V~~~~~s~~~~g~-~l~s~~~dg~i~vwd~~~   95 (732)
                      .++|+++.|+|...+|++++.|++++||.+..  ...+..+ .--..+|.+..|.|++  . .+++++....++.||+.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p~G--~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAPNG--HSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecCCC--ceEEEecccceEEEEeeccc
Confidence            58999999999999999999999999998763  3345555 3457899999999994  5 899999999999999987


Q ss_pred             CCCCCCCCCCCCCceeecccc-CceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745           96 FSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                      .+..        .+..+.++. ..+..+.++|++ ++|+..+..|.|.+-...+++.+.                     
T Consensus       290 ak~~--------k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~---------------------  339 (514)
T KOG2055|consen  290 AKVT--------KLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELIT---------------------  339 (514)
T ss_pred             cccc--------cccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhh---------------------
Confidence            5432        244455544 356778889955 899999999999999988887431                     


Q ss_pred             ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  254 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  254 (732)
                           .-...+.|..+.|+.+ ++.|++++.+|.|.+||++....+..+             ..     .|.-  .-+++
T Consensus       340 -----s~KieG~v~~~~fsSd-sk~l~~~~~~GeV~v~nl~~~~~~~rf-------------~D-----~G~v--~gts~  393 (514)
T KOG2055|consen  340 -----SFKIEGVVSDFTFSSD-SKELLASGGTGEVYVWNLRQNSCLHRF-------------VD-----DGSV--HGTSL  393 (514)
T ss_pred             -----eeeeccEEeeEEEecC-CcEEEEEcCCceEEEEecCCcceEEEE-------------ee-----cCcc--ceeee
Confidence                 1123457899999988 688888888999999999987444333             11     1111  24678


Q ss_pred             EEcCCCCEEEEEecCCeEEEEECCC
Q 004745          255 TFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       255 ~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +.+++|++|++|+..|.|-|||.++
T Consensus       394 ~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  394 CISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             eecCCCceEEeccCcceEEEeccch
Confidence            8899999999999999999999877

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=2.2e-21  Score=182.44  Aligned_cols=216  Identities=20%  Similarity=0.288  Sum_probs=168.5

Q ss_pred             eeeccCCceeEEEEcCCC--CEEEEEeCCCcEEEEeCCC----------------CeeEEEEccCCCcCeEEEEEecCCC
Q 004745           14 ELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSS----------------RKLLHSIETGHSANVFCTKFVPETS   75 (732)
Q Consensus        14 ~l~~h~~~V~~l~~s~dg--~~lasg~~dg~i~vWd~~~----------------~~~~~~~~~~h~~~V~~~~~s~~~~   75 (732)
                      ..-+|.+.|+.+.-++-+  .+.|+-+..|.|.|||+..                .+.+.++ .+|...=++++|||-. 
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~-  223 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIK-  223 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccccc-
Confidence            345688999998888754  5777778899999999752                3456777 7899888999999964 


Q ss_pred             CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004745           76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  155 (732)
Q Consensus        76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  155 (732)
                      -..|+||..-+.|++|...++.-..-       -..+.+|+..|-.++|+|.....|++||.||+|+|||++.+....  
T Consensus       224 ~g~LlsGDc~~~I~lw~~~~g~W~vd-------~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--  294 (440)
T KOG0302|consen  224 TGRLLSGDCVKGIHLWEPSTGSWKVD-------QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--  294 (440)
T ss_pred             ccccccCccccceEeeeeccCceeec-------CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--
Confidence            35789998889999999987543321       345677999999999999988999999999999999999885220  


Q ss_pred             CCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccc
Q 004745          156 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  235 (732)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  235 (732)
                                          .+. ...|...|+-|+|+... .+||+|+.||+++|||+++.+.-          ..+..
T Consensus       295 --------------------~~~-~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~----------~pVA~  342 (440)
T KOG0302|consen  295 --------------------AVS-TKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG----------QPVAT  342 (440)
T ss_pred             --------------------eeE-eeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC----------Cccee
Confidence                                111 14567799999999984 49999999999999999976532          11222


Q ss_pred             ccccccccCCCccccEEEEEEcCC-CCEEEEEecCCeEEEEECCCC
Q 004745          236 FCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~l~~sp~-g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      |       ..|.. +|+++.|+|. ...|++++.|.+|.|||+.-.
T Consensus       343 f-------k~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  343 F-------KYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             E-------EeccC-CeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            2       33444 7999999995 457888888999999998753

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.88  E-value=8e-22  Score=192.42  Aligned_cols=239  Identities=15%  Similarity=0.188  Sum_probs=174.1

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc------------cCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE------------TGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~------------~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      ..+|++++|++.|..|++.+....++|+|-. |..+..+.            ++|...++|.+|+|.. .+.++||+.||
T Consensus       214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-k~~FlT~s~Dg  291 (641)
T KOG0772|consen  214 THQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-KEEFLTCSYDG  291 (641)
T ss_pred             ccccceeeecCCCCeEEEEecCcceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCc-ccceEEecCCC
Confidence            4589999999999988887777899999954 43333331            5899999999999986 47899999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      +++|||+.....+..    ........+-.-+++.++|+|++ .+||+|+.||.|.+|+......-              
T Consensus       292 tlRiWdv~~~k~q~q----Vik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~--------------  352 (641)
T KOG0772|consen  292 TLRIWDVNNTKSQLQ----VIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVR--------------  352 (641)
T ss_pred             cEEEEecCCchhhee----EEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccc--------------
Confidence            999999987543210    00001122445678999999965 78999999999999998543311              


Q ss_pred             eeccCCccccccCCCCCcc--ceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004745          167 LDLRCGAKRSLADPPKQTL--SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                            .  .+.....|..  .|+|++|+++ |++|++-+.|+++++||++..+.            |+..+...     
T Consensus       353 ------p--~~~vk~AH~~g~~Itsi~FS~d-g~~LlSRg~D~tLKvWDLrq~kk------------pL~~~tgL-----  406 (641)
T KOG0772|consen  353 ------P--VMKVKDAHLPGQDITSISFSYD-GNYLLSRGFDDTLKVWDLRQFKK------------PLNVRTGL-----  406 (641)
T ss_pred             ------c--ceEeeeccCCCCceeEEEeccc-cchhhhccCCCceeeeecccccc------------chhhhcCC-----
Confidence                  0  0111112333  8999999999 89999999999999999997652            22221111     


Q ss_pred             CCccccEEEEEEcCCCCEEEEEec------CCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCc
Q 004745          245 GRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL  305 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (732)
                       ....+-+.++|||+.++|++|+.      .|.+++||..+...++.+......+....|+|.+++.
T Consensus       407 -~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi  472 (641)
T KOG0772|consen  407 -PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQI  472 (641)
T ss_pred             -CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhe
Confidence             11114577999999999999965      4789999999987777776666667777788876554

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=1.2e-20  Score=172.68  Aligned_cols=162  Identities=17%  Similarity=0.277  Sum_probs=125.8

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  138 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  138 (732)
                      ..-.+.|.+++|||.. ..+++.++.|++||+|+++.. +..      .+ +....|.++|.+++|+.++ ..+++|+.|
T Consensus        24 ~pP~DsIS~l~FSP~~-~~~~~A~SWD~tVR~wevq~~-g~~------~~-ka~~~~~~PvL~v~Wsddg-skVf~g~~D   93 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQA-DNLLAAGSWDGTVRIWEVQNS-GQL------VP-KAQQSHDGPVLDVCWSDDG-SKVFSGGCD   93 (347)
T ss_pred             CCcccchheeEecccc-CceEEecccCCceEEEEEecC-Ccc------cc-hhhhccCCCeEEEEEccCC-ceEEeeccC
Confidence            5677889999999954 477889999999999999863 221      12 5566799999999999865 888899999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCCC
Q 004745          139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRML  217 (732)
Q Consensus       139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~~  217 (732)
                      +.+++||+.+++..                          ....|..+|..+.|-+.. ...|+||+.|.+|+.||++..
T Consensus        94 k~~k~wDL~S~Q~~--------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~  147 (347)
T KOG0647|consen   94 KQAKLWDLASGQVS--------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS  147 (347)
T ss_pred             CceEEEEccCCCee--------------------------eeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence            99999999998632                          122467789999987652 237899999999999999988


Q ss_pred             CCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          218 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      .++.++..+.                      .++++..  -...++++..+..|.+|+++++
T Consensus       148 ~pv~t~~LPe----------------------RvYa~Dv--~~pm~vVata~r~i~vynL~n~  186 (347)
T KOG0647|consen  148 NPVATLQLPE----------------------RVYAADV--LYPMAVVATAERHIAVYNLENP  186 (347)
T ss_pred             Ceeeeeeccc----------------------eeeehhc--cCceeEEEecCCcEEEEEcCCC
Confidence            7776653211                      2444433  3457899999999999999883

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=1.5e-20  Score=173.29  Aligned_cols=207  Identities=18%  Similarity=0.268  Sum_probs=148.9

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCCC-------Ce-----eEEEEccCCCcCeEEEEEe-------cCCCCCEEEEE
Q 004745           22 VNAISWNSKGSLLISGSDDTHINVWSYSS-------RK-----LLHSIETGHSANVFCTKFV-------PETSDELVVSG   82 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~-------~~-----~~~~~~~~h~~~V~~~~~s-------~~~~g~~l~s~   82 (732)
                      ...+.|+|||..|++-+.|..+++|++..       ..     ....+.......|...+|-       |+.  .++++.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t--~l~a~s  129 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST--NLFAVS  129 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc--ceeeec
Confidence            34678999999999999999999998741       10     1111111345668888886       443  689999


Q ss_pred             ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccC---ceeEEEEecCCCcEEEEEeCCCcEEEEEC-CCCCCCCCCCCC
Q 004745           83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGTLRQHDF-RQGSSCPPAGSS  158 (732)
Q Consensus        83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s~s~dg~i~vwd~-~~~~~~~~~~~~  158 (732)
                      +.+.-|++||.-+++.++.        ...-.|.+   ...+++|+|++ ..|+ ++....|+++|+ +.+..+..... 
T Consensus       130 sr~~PIh~wdaftG~lraS--------y~~ydh~de~taAhsL~Fs~DG-eqlf-aGykrcirvFdt~RpGr~c~vy~t-  198 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRAS--------YRAYDHQDEYTAAHSLQFSPDG-EQLF-AGYKRCIRVFDTSRPGRDCPVYTT-  198 (406)
T ss_pred             cccCceeeeeccccccccc--------hhhhhhHHhhhhheeEEecCCC-CeEe-ecccceEEEeeccCCCCCCcchhh-
Confidence            9999999999998765432        22223433   34689999977 5554 456689999999 44442210000 


Q ss_pred             CcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccc
Q 004745          159 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  238 (732)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  238 (732)
                                       ......+..+-+.+++|+|.+...+++|+....+-||.-....++..+               
T Consensus       199 -----------------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll---------------  246 (406)
T KOG2919|consen  199 -----------------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL---------------  246 (406)
T ss_pred             -----------------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee---------------
Confidence                             000122345578899999998889999999999999988877766554               


Q ss_pred             cccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCC
Q 004745          239 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  279 (732)
Q Consensus       239 ~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~  279 (732)
                           .||.+ .|+.+.|+++|+.|++|+. |..|..||++.
T Consensus       247 -----ggh~g-GvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  247 -----GGHGG-GVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             -----cccCC-CeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence                 66777 4999999999999999988 78999999988

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.5e-20  Score=164.52  Aligned_cols=213  Identities=22%  Similarity=0.313  Sum_probs=163.3

Q ss_pred             eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee-----EEEEccCCCcCeEEEEEecC--CCCCEEEEEEC-CC
Q 004745           15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPE--TSDELVVSGAG-DA   86 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~-----~~~~~~~h~~~V~~~~~s~~--~~g~~l~s~~~-dg   86 (732)
                      -+-|.+.|+|.+|+|+|++||+|+.|.+|++.-++...+     -..+ .-|.+.|..++|..+  +.+.+|++++. |.
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc  163 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDC  163 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence            346899999999999999999999999999987654322     1234 569999999999753  33567777653 66


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      .|.+-|..++++          .+.+.+|++.|.++---  ++-.|++|+.|.+|++||++-.........         
T Consensus       164 ~iy~tdc~~g~~----------~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~---------  222 (350)
T KOG0641|consen  164 KIYITDCGRGQG----------FHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDN---------  222 (350)
T ss_pred             eEEEeecCCCCc----------ceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccC---------
Confidence            666667665433          78899999999887321  458999999999999999987653211000         


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                               ......-....|.+++..|. |++|++|-.|....+||++.+++++.+                    ..|
T Consensus       223 ---------~~~~~glessavaav~vdps-grll~sg~~dssc~lydirg~r~iq~f--------------------~ph  272 (350)
T KOG0641|consen  223 ---------DFHDGGLESSAVAAVAVDPS-GRLLASGHADSSCMLYDIRGGRMIQRF--------------------HPH  272 (350)
T ss_pred             ---------cccCCCcccceeEEEEECCC-cceeeeccCCCceEEEEeeCCceeeee--------------------CCC
Confidence                     00011112347899999999 899999999999999999998877655                    445


Q ss_pred             ccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      .. .|.++.|+|.-.|+++++.|..|++-|++..
T Consensus       273 sa-dir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  273 SA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             cc-ceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            55 5999999999999999999999999999863

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4.9e-20  Score=192.50  Aligned_cols=209  Identities=13%  Similarity=0.145  Sum_probs=165.3

Q ss_pred             eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004745           16 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS   94 (732)
Q Consensus        16 ~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~-~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~   94 (732)
                      .+|+.+-+.++|.|+|++|.+++.||.|++|+.... +....+ .-+...|.+++-..    .+|++|+.+++|.+|.+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~~s----~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIACYS----NHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEeecc----cceEEeeccceEEEeeCC
Confidence            369999999999999999999999999999987665 444444 23777788876543    589999999999999998


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                      .+....          .+...+-++++++|+. ++.++|.||.|-.|++-++.+...                       
T Consensus        85 s~~~~~----------iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~-----------------------  130 (933)
T KOG1274|consen   85 SGEEDT----------ILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQ-----------------------  130 (933)
T ss_pred             CCCccc----------eeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccch-----------------------
Confidence            754321          2333467899999998 558999999999999999887652                       


Q ss_pred             ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  254 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  254 (732)
                        .....+|..+|.++.|+|. +++||+.+.||.|++||+.++.....+....+..             .......+..+
T Consensus       131 --~~~lrgh~apVl~l~~~p~-~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n-------------~~~~s~i~~~~  194 (933)
T KOG1274|consen  131 --EKVLRGHDAPVLQLSYDPK-GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN-------------EFILSRICTRL  194 (933)
T ss_pred             --heeecccCCceeeeeEcCC-CCEEEEEecCceEEEEEcccchhhhhcccCCccc-------------cccccceeeee
Confidence              2344578889999999999 8999999999999999999887665553221111             11112247889


Q ss_pred             EEcCCCCEEEEEecCCeEEEEECCC
Q 004745          255 TFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       255 ~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +|+|+|..|++.+.|+.|.+|+..+
T Consensus       195 aW~Pk~g~la~~~~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  195 AWHPKGGTLAVPPVDNTVKVYSRKG  219 (933)
T ss_pred             eecCCCCeEEeeccCCeEEEEccCC
Confidence            9999998999999999999998887

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.6e-21  Score=179.00  Aligned_cols=214  Identities=22%  Similarity=0.343  Sum_probs=178.7

Q ss_pred             hhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC------C-----------------------------
Q 004745            6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------S-----------------------------   50 (732)
Q Consensus         6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~------~-----------------------------   50 (732)
                      +++.+++..+.||.+.|+++.|++.+.++++++.|++..||...      .                             
T Consensus       177 ~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s  256 (481)
T KOG0300|consen  177 LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS  256 (481)
T ss_pred             eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence            45677888999999999999999999999999999999999721      0                             


Q ss_pred             -C----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe
Q 004745           51 -R----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE  125 (732)
Q Consensus        51 -~----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  125 (732)
                       +    ..+..+ .+|.+.|.+..|...  |+.+++++.|.+..+||++++          +++..+.||....+.+.-+
T Consensus       257 D~~tiRvPl~~l-tgH~~vV~a~dWL~g--g~Q~vTaSWDRTAnlwDVEtg----------e~v~~LtGHd~ELtHcstH  323 (481)
T KOG0300|consen  257 DGHTIRVPLMRL-TGHRAVVSACDWLAG--GQQMVTASWDRTANLWDVETG----------EVVNILTGHDSELTHCSTH  323 (481)
T ss_pred             CCceeeeeeeee-eccccceEehhhhcC--cceeeeeeccccceeeeeccC----------ceeccccCcchhccccccC
Confidence             0    123445 689999999999988  699999999999999999984          4588999999999999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC
Q 004745          126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS  205 (732)
Q Consensus       126 p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~  205 (732)
                      | ..+++++.+.|.+.++||++..-                        ..+....+|...|++..|..+  ..+++|+.
T Consensus       324 p-tQrLVvTsSrDtTFRLWDFReaI------------------------~sV~VFQGHtdtVTS~vF~~d--d~vVSgSD  376 (481)
T KOG0300|consen  324 P-TQRLVVTSSRDTTFRLWDFREAI------------------------QSVAVFQGHTDTVTSVVFNTD--DRVVSGSD  376 (481)
T ss_pred             C-cceEEEEeccCceeEeccchhhc------------------------ceeeeecccccceeEEEEecC--CceeecCC
Confidence            9 55899999999999999998432                        234445678889999999986  48999999


Q ss_pred             CCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          206 DAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       206 dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      |.+|+|||+++++ ++.++                      ....+++.++.+..+++|+.--.+..|++||++...
T Consensus       377 DrTvKvWdLrNMRsplATI----------------------RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R  431 (481)
T KOG0300|consen  377 DRTVKVWDLRNMRSPLATI----------------------RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR  431 (481)
T ss_pred             CceEEEeeeccccCcceee----------------------ecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence            9999999999764 23222                      122368999999999999999999999999998744

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=4.6e-20  Score=169.22  Aligned_cols=258  Identities=15%  Similarity=0.201  Sum_probs=179.4

Q ss_pred             eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004745           16 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF   91 (732)
Q Consensus        16 ~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw   91 (732)
                      .+|.+-|.++.|.+-|+.+|||+.|++|+|||....    .+.... +.|.+.|..+.|.+.+-|+.+++|+.|+++.||
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            579999999999999999999999999999996533    456666 689999999999876668999999999999999


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCC--------C---CC--C
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCP--------P---AG--S  157 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~--------~---~~--~  157 (732)
                      .-...+.+. .........++..-...|+++.|.|.. +-.+|+++.||.+|||+....-.+.        .   ..  .
T Consensus        89 EE~~~~~~~-~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   89 EEQEKSEEA-HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeccccccc-ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            864222111 011233455677778899999999942 3678999999999999876543220        0   00  0


Q ss_pred             CC---------------------------cccceEEeeccCC--ccccccCCCCCccceEEEEecCCCC---CEEEEEeC
Q 004745          158 SH---------------------------QECRNILLDLRCG--AKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGS  205 (732)
Q Consensus       158 ~~---------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~---~~l~tg~~  205 (732)
                      .+                           ......++....+  ....+...+++..+|++++|.|+-|   ++||+++.
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence            00                           0012233333222  3345567789999999999999754   47999999


Q ss_pred             CCeEEEEECCCCC-CCcccccCCCCCCcccccccccccc-CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          206 DAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSE-HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       206 dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      || |+||.+.... .+.  ......+.-+..+......+ .+|.+ .|+.+.|.-.|..|.+.+.||.|++|...-
T Consensus       248 Dg-v~I~~v~~~~s~i~--~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAIE--EEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             Cc-EEEEEEeeccchhh--hhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            99 9999998532 110  00111111111111111221 34544 699999999999999999999999997653

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1.1e-21  Score=200.66  Aligned_cols=227  Identities=16%  Similarity=0.193  Sum_probs=180.7

Q ss_pred             hhhhh--hccccEeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE
Q 004745            3 SSLVR--RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV   79 (732)
Q Consensus         3 ~~~~~--~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l   79 (732)
                      |++.+  +.+++..|..|+..|+++.|++. ..+|++||.||+|++||++..+-..++ .+....|..++|+|.. +.++
T Consensus       115 Wdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~-~~~F  192 (839)
T KOG0269|consen  115 WDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGY-GNKF  192 (839)
T ss_pred             EecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-cccchhhhceeeccCC-CceE
Confidence            34444  45667789999999999999984 578999999999999999999888888 6888999999999986 7999


Q ss_pred             EEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004745           80 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH  159 (732)
Q Consensus        80 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  159 (732)
                      +++...|.+++||++.+.         .+...+.+|.++|.++.|+| ++.+|||||.|++|+|||+.+++...      
T Consensus       193 ~s~~dsG~lqlWDlRqp~---------r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~------  256 (839)
T KOG0269|consen  193 ASIHDSGYLQLWDLRQPD---------RCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKP------  256 (839)
T ss_pred             EEecCCceEEEeeccCch---------hHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccc------
Confidence            999999999999999754         34678889999999999999 67999999999999999998765320      


Q ss_pred             cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC--CCeEEEEECCCCCCCcccccCCCCCCcccccc
Q 004745          160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS--DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  237 (732)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  237 (732)
                            +...            ....+|.++.|-|...+.|++++.  |-.|+|||++-.                  |.
T Consensus       257 ------~~tI------------nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP------------------YI  300 (839)
T KOG0269|consen  257 ------KHTI------------NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP------------------YI  300 (839)
T ss_pred             ------eeEE------------eecceeeeeeeccCccchhhhhhccccceEEEEeeccc------------------cc
Confidence                  0000            112388999999998888998875  778999999842                  22


Q ss_pred             ccccccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEECCCCCCcce
Q 004745          238 PMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGGRAM  285 (732)
Q Consensus       238 ~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~~  285 (732)
                      |.... ..|.. .++.++|.. |...|.+++.||+|..-.+++...+..
T Consensus       301 P~~t~-~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~pid  347 (839)
T KOG0269|consen  301 PYATF-LEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTPID  347 (839)
T ss_pred             cceee-eccCc-cccceeccCCCceeeEeecCccHHHHhhhhcccChhh
Confidence            32221 23555 488899976 456788899999998887777554443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.86  E-value=9.2e-20  Score=175.98  Aligned_cols=218  Identities=17%  Similarity=0.264  Sum_probs=166.1

Q ss_pred             ccccEeeeccCCceeEEEEcCCC--CEEEEEeCCCcEEEEeCCCC----eeEEEEccCCCcCeEEEEEecCCCCCEEEEE
Q 004745            9 LSQERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSG   82 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg--~~lasg~~dg~i~vWd~~~~----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~   82 (732)
                      .......+-|...|++++|+|..  +++|+|..-|.|-+||+.+.    ..+..+ ..|..+|.++.|+|.. ...+++.
T Consensus       176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n-~s~i~ss  253 (498)
T KOG4328|consen  176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPAN-TSQIYSS  253 (498)
T ss_pred             ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCC-hhheeee
Confidence            34455677899999999999955  58888999999999999522    234555 7899999999999985 5789999


Q ss_pred             ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004745           83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  162 (732)
Q Consensus        83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  162 (732)
                      +.||+|++-|++.....        .+..+......+.++.|+..+ ..++.+..=|...+||+++....          
T Consensus       254 SyDGtiR~~D~~~~i~e--------~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~----------  314 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNISE--------EVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSE----------  314 (498)
T ss_pred             ccCceeeeeeecchhhH--------HHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCcc----------
Confidence            99999999999965332        234444445667788888866 44445666669999999987632          


Q ss_pred             ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004745          163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  242 (732)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (732)
                                    ......|...|.+++++|....+|+|++.|++++|||++.......       |         .+.
T Consensus       315 --------------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-------p---------~ls  364 (498)
T KOG4328|consen  315 --------------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-------P---------FLS  364 (498)
T ss_pred             --------------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-------c---------cee
Confidence                          1122234558999999999899999999999999999997654322       0         011


Q ss_pred             cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       243 ~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                      ...|.. .|.++.|||.+-.|++.+.|..|+|||..
T Consensus       365 t~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  365 TLPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             cccccc-eeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            133444 59999999988889999999999999875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.3e-19  Score=166.71  Aligned_cols=192  Identities=15%  Similarity=0.179  Sum_probs=135.8

Q ss_pred             EEEEeCCCCeeEEEE----ccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCc
Q 004745           43 INVWSYSSRKLLHSI----ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  118 (732)
Q Consensus        43 i~vWd~~~~~~~~~~----~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  118 (732)
                      .+-|+.+..+..+.+    +++|...|++++|+.+  |++|+|++.|++|++|+++....+..     .+++... ..+.
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~eH-----r~~R~nv-e~dh  134 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKEH-----RCIRQNV-EYDH  134 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhhh-----hHhhccc-cCCC
Confidence            556766655544332    3699999999999999  69999999999999999986433221     1222221 1246


Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCC
Q 004745          119 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH  198 (732)
Q Consensus       119 v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  198 (732)
                      .+.+.|.||...+++++-...++++|.+...+.-...+      ..+       ....+.+...|...+..+..... +.
T Consensus       135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~------~~v-------~~D~~~f~~kh~v~~i~iGiA~~-~k  200 (420)
T KOG2096|consen  135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSH------HFV-------HIDNLEFERKHQVDIINIGIAGN-AK  200 (420)
T ss_pred             ceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCc------ccc-------cccccccchhcccceEEEeecCC-ce
Confidence            78899999887888888888899999987655311000      001       11123345567777777877766 88


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          199 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       199 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                      +|++++.|..|.+|+++ ++.+..+...                     ...-+..+.||+|++|++++..--|++|++-
T Consensus       201 ~imsas~dt~i~lw~lk-Gq~L~~idtn---------------------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~  258 (420)
T KOG2096|consen  201 YIMSASLDTKICLWDLK-GQLLQSIDTN---------------------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPI  258 (420)
T ss_pred             EEEEecCCCcEEEEecC-Cceeeeeccc---------------------cccccceeeCCCCcEEEEecCCCCceEEEEE
Confidence            99999999999999999 6665544221                     1124567899999999999998899999653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=6.1e-22  Score=200.98  Aligned_cols=202  Identities=24%  Similarity=0.402  Sum_probs=174.0

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      +...+..|.+|..+|.++.|+++..+|++|+.+|+|++||++.++.++++ .+|...+..+.|+|.  +.+.++|+.|+.
T Consensus        59 kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~--~~~~a~gStdtd  135 (825)
T KOG0267|consen   59 KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPY--GEFFASGSTDTD  135 (825)
T ss_pred             CCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccc--eEEecccccccc
Confidence            33455668999999999999999999999999999999999999999988 899999999999999  589999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      +++||.+..          .|.+.+.+|...|..++|+|+ +.+++++++|..+++||+..++.                
T Consensus       136 ~~iwD~Rk~----------Gc~~~~~s~~~vv~~l~lsP~-Gr~v~~g~ed~tvki~d~~agk~----------------  188 (825)
T KOG0267|consen  136 LKIWDIRKK----------GCSHTYKSHTRVVDVLRLSPD-GRWVASGGEDNTVKIWDLTAGKL----------------  188 (825)
T ss_pred             ceehhhhcc----------CceeeecCCcceeEEEeecCC-CceeeccCCcceeeeeccccccc----------------
Confidence            999999953          347889999999999999995 49999999999999999998873                


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                               +.....|.+.+.++.|+|. ..++++|+.|++|++||+++.+.+...                    . ..
T Consensus       189 ---------~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~--------------------~-~~  237 (825)
T KOG0267|consen  189 ---------SKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSG--------------------K-PE  237 (825)
T ss_pred             ---------ccccccccccccccccCch-hhhhccCCCCceeeeeccceeEEeecc--------------------C-Cc
Confidence                     3445567788999999998 679999999999999999987655432                    1 11


Q ss_pred             cccEEEEEEcCCCCEEEEEecCC
Q 004745          248 SLHLTHVTFSPNGEEVLLSYSGE  270 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~dg  270 (732)
                      ...|.+++|+|++..+++|....
T Consensus       238 ~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  238 TDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             cCCceeeeecCCceeeecCchhh
Confidence            22599999999999888886653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=9e-22  Score=199.73  Aligned_cols=233  Identities=16%  Similarity=0.219  Sum_probs=194.2

Q ss_pred             EeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004745           13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN   92 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd   92 (732)
                      +.+..|...|.++..-..++.+++|+.|..+-+|.+.....+..+ .+|..+|.++.|++.+  .+|++|+.+|+|++||
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~E--~LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTSE--RLLAAGSASGTIKVWD   98 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcch--hhhcccccCCceeeee
Confidence            455678999999998778899999999999999998888777777 7999999999999995  8999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004745           93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                      +...          +.++++.||...+.++.|+|.+ .++++|+.|+.+.+||++...+.                    
T Consensus        99 leeA----------k~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~--------------------  147 (825)
T KOG0267|consen   99 LEEA----------KIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCS--------------------  147 (825)
T ss_pred             hhhh----------hhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCce--------------------
Confidence            9963          3378999999999999999965 88899999999999999865421                    


Q ss_pred             ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004745          173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  252 (732)
Q Consensus       173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (732)
                           ....+|...+..+.|+|+ |.+++.|+.|.+++|||+..++.+..+                    .+|.. .+.
T Consensus       148 -----~~~~s~~~vv~~l~lsP~-Gr~v~~g~ed~tvki~d~~agk~~~ef--------------------~~~e~-~v~  200 (825)
T KOG0267|consen  148 -----HTYKSHTRVVDVLRLSPD-GRWVASGGEDNTVKIWDLTAGKLSKEF--------------------KSHEG-KVQ  200 (825)
T ss_pred             -----eeecCCcceeEEEeecCC-CceeeccCCcceeeeeccccccccccc--------------------ccccc-ccc
Confidence                 222346667899999999 899999999999999999988776655                    44555 589


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004745          253 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (732)
                      .+.|+|..-.++.|+.|++|++||+++.....                ..+.....+.+.+|.|+|..+.
T Consensus       201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~----------------s~~~~~~~v~~~~fn~~~~~~~  254 (825)
T KOG0267|consen  201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS----------------SGKPETDGVRSLAFNPDGKIVL  254 (825)
T ss_pred             ccccCchhhhhccCCCCceeeeeccceeEEee----------------ccCCccCCceeeeecCCceeee
Confidence            99999999999999999999999999733211                2233355677888888888777

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=1.2e-20  Score=177.63  Aligned_cols=231  Identities=17%  Similarity=0.251  Sum_probs=170.9

Q ss_pred             hhccccEeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeEE---EEccCCCcCeEEEEEecCCCCCEEEEE
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLH---SIETGHSANVFCTKFVPETSDELVVSG   82 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~~~---~~~~~h~~~V~~~~~s~~~~g~~l~s~   82 (732)
                      ..++++.++.+|...=++++|||-. -.|+||..-+.|++|...++....   -| .+|+..|..++|||.. ...|+||
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf-~gH~~SVEDLqWSptE-~~vfaSc  276 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPF-TGHTKSVEDLQWSPTE-DGVFASC  276 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccc-cccccchhhhccCCcc-CceEEee
Confidence            3567889999999999999999922 358899888999999998875432   23 5799999999999987 5899999


Q ss_pred             ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004745           83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  162 (732)
Q Consensus        83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  162 (732)
                      +.||+|+|||++.+....        ....+.|...|+.|.|+... .+||+|+.||+++|||+++-+.-          
T Consensus       277 S~DgsIrIWDiRs~~~~~--------~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~----------  337 (440)
T KOG0302|consen  277 SCDGSIRIWDIRSGPKKA--------AVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG----------  337 (440)
T ss_pred             ecCceEEEEEecCCCccc--------eeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC----------
Confidence            999999999999764322        34448899999999999866 49999999999999999987621          


Q ss_pred             ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004745          163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  242 (732)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (732)
                                  .++.....|..+|+++.|+|.....|++++.|..|.|||+..............  .-++...|.-+.
T Consensus       338 ------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~--~~L~dlPpQLLF  403 (440)
T KOG0302|consen  338 ------------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAA--EGLQDLPPQLLF  403 (440)
T ss_pred             ------------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccc--cchhcCCceeEE
Confidence                        244555668889999999999888999999999999999975432111100000  002222222222


Q ss_pred             c-CCCccccEEEEEEcCCCC-EEEEEecCCeEEEE
Q 004745          243 E-HGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLM  275 (732)
Q Consensus       243 ~-~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iw  275 (732)
                      - +|..  .+..+.|+++-. +|++.+.||. .||
T Consensus       404 VHqGQk--e~KevhWH~QiPG~lvsTa~dGf-nVf  435 (440)
T KOG0302|consen  404 VHQGQK--EVKEVHWHRQIPGLLVSTAIDGF-NVF  435 (440)
T ss_pred             Eecchh--HhhhheeccCCCCeEEEecccce-eEE
Confidence            2 2222  388899999654 5666666763 344

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=7.2e-21  Score=178.10  Aligned_cols=248  Identities=16%  Similarity=0.210  Sum_probs=194.6

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      ++.+++++|.+.|+.|++..  ..+++++.|.+|+.|.+.. ..++++  .....+..+.-+..  +..++||+.  .|.
T Consensus       100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~ti--lg~s~~~gIdh~~~--~~~FaTcGe--~i~  170 (433)
T KOG0268|consen  100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTI--LGKSVYLGIDHHRK--NSVFATCGE--QID  170 (433)
T ss_pred             hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceee--eccccccccccccc--cccccccCc--eee
Confidence            45788999999999999987  6789999999999999765 366666  34556778877666  478999885  489


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  169 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  169 (732)
                      |||....          .|+..+.--.+.|.++.|+|....+|++|+.|+.|.+||+++..++.          .++.++
T Consensus       171 IWD~~R~----------~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~----------KVi~~m  230 (433)
T KOG0268|consen  171 IWDEQRD----------NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK----------KVILTM  230 (433)
T ss_pred             ecccccC----------CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc----------eeeeec
Confidence            9999752          45777777788999999999888999999999999999999987542          122222


Q ss_pred             cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004745          170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                                      .-+.|+|+|. ...+++|..|..++.||++....            .+..+       .+|.. 
T Consensus       231 ----------------RTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~~------------p~~v~-------~dhvs-  273 (433)
T KOG0268|consen  231 ----------------RTNTICWNPE-AFNFVAANEDHNLYTYDMRNLSR------------PLNVH-------KDHVS-  273 (433)
T ss_pred             ----------------cccceecCcc-ccceeeccccccceehhhhhhcc------------cchhh-------cccce-
Confidence                            3357899995 88899999999999999997642            11111       45655 


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCc
Q 004745          250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL  329 (732)
Q Consensus       250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  329 (732)
                      .|.+++|+|.|+.+++|+.|.+|+||..+.+......+.               ..-..|.++.+|.|.+++.   +++.
T Consensus       274 AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht---------------kRMq~V~~Vk~S~Dskyi~---SGSd  335 (433)
T KOG0268|consen  274 AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT---------------KRMQHVFCVKYSMDSKYII---SGSD  335 (433)
T ss_pred             eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH---------------hhhheeeEEEEeccccEEE---ecCC
Confidence            699999999999999999999999999998653322221               1123578899999999999   9999


Q ss_pred             chhhHHHHHHHh
Q 004745          330 GKCRMLVEIARN  341 (732)
Q Consensus       330 d~~~~l~~~~~~  341 (732)
                      |+.+++|+...|
T Consensus       336 d~nvRlWka~As  347 (433)
T KOG0268|consen  336 DGNVRLWKAKAS  347 (433)
T ss_pred             Ccceeeeecchh
Confidence            999999554443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=2.3e-20  Score=199.94  Aligned_cols=208  Identities=17%  Similarity=0.274  Sum_probs=147.6

Q ss_pred             EEEEcCCCC-EEEEE----------eCCCcEEEEeCC--CCe----eEEEEccCCCcCeEEEEEecCCCCC--EEEEEEC
Q 004745           24 AISWNSKGS-LLISG----------SDDTHINVWSYS--SRK----LLHSIETGHSANVFCTKFVPETSDE--LVVSGAG   84 (732)
Q Consensus        24 ~l~~s~dg~-~lasg----------~~dg~i~vWd~~--~~~----~~~~~~~~h~~~V~~~~~s~~~~g~--~l~s~~~   84 (732)
                      .++|+|++. +||+|          +.+.++-||.+.  +.+    .+..+  .-....+.++|.+.+++.  +|+.|..
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--cccccceeeeecccCCCccceeecccc
Confidence            578999886 66655          234566677543  222    33333  344668899999985321  5899999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      ||.|.+||......    ......+.....|.+.|..+.|++..+++||+|+.||.|.|||+...+......        
T Consensus        89 dG~I~ly~p~~~~~----~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--------  156 (1049)
T KOG0307|consen   89 DGNIVLYDPASIIA----NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--------  156 (1049)
T ss_pred             CCceEEecchhhcc----CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--------
Confidence            99999999875200    111245778889999999999999998999999999999999998866331000        


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                                     .......|.+++|+..-.+.|++++.+|.+.|||++..+++-.+..                  .
T Consensus       157 ---------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~------------------~  203 (1049)
T KOG0307|consen  157 ---------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD------------------T  203 (1049)
T ss_pred             ---------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc------------------C
Confidence                           1123448999999988778999999999999999998876654421                  1


Q ss_pred             CCccccEEEEEEcCCC-CEEEEEecCC---eEEEEECCC
Q 004745          245 GRSSLHLTHVTFSPNG-EEVLLSYSGE---HVYLMDVNH  279 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g-~~l~~~~~dg---~v~iwd~~~  279 (732)
                      +. ...+..++|+|+. ..|++++.|.   .|.+||++.
T Consensus       204 ~~-~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~  241 (1049)
T KOG0307|consen  204 PG-RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF  241 (1049)
T ss_pred             CC-ccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence            11 1248899999976 4566666643   577777665

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.84  E-value=6.7e-20  Score=164.49  Aligned_cols=230  Identities=13%  Similarity=0.125  Sum_probs=139.0

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      ..+...|++|.+.|+++.|-.+++ |.+|..-|.|++|++.+...+..+.-.|...|+.+.-.|+   ..+.+-+.|+.+
T Consensus         4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L   79 (323)
T KOG0322|consen    4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLL   79 (323)
T ss_pred             CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceE
Confidence            456778899999999999998876 8889999999999999998887773367889999999997   678999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC-cEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      .+|++..+             ....-|.-.++++-|.+.   -+...+... .+-.++-+....... ..+...+...+.
T Consensus        80 ~lw~ia~s-------------~~i~i~Si~~nslgFCrf---Sl~~~~k~~eqll~yp~rgsde~h~-~D~g~~tqv~i~  142 (323)
T KOG0322|consen   80 ILWTIAYS-------------AFISIHSIVVNSLGFCRF---SLVKKPKNSEQLLEYPSRGSDETHK-QDGGDTTQVQIA  142 (323)
T ss_pred             EEEEccCc-------------ceEEEeeeeccccccccc---eeccCCCcchhheecCCcccchhhh-hccCccceeEcc
Confidence            99999852             233346677777877662   232322221 122222221111000 000000000110


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCC--CEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRP--HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  245 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (732)
                      +         .......+.+.+..+....+  -+|++|-.+|.+.+||+.++..+-.+.  ...+-+...        ..
T Consensus       143 d---------d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~--~~~kv~~~~--------as  203 (323)
T KOG0322|consen  143 D---------DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP--QSSKVESPN--------AS  203 (323)
T ss_pred             C---------chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc--cccccccch--------hh
Confidence            0         01122344666666433322  256677789999999999864332221  110111000        22


Q ss_pred             CccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      |.. +|.++.+.+.-..=+.|+.+..+..|+++.
T Consensus       204 h~q-pvlsldyas~~~rGisgga~dkl~~~Sl~~  236 (323)
T KOG0322|consen  204 HKQ-PVLSLDYASSCDRGISGGADDKLVMYSLNH  236 (323)
T ss_pred             ccC-cceeeeechhhcCCcCCCccccceeeeecc
Confidence            333 688888877555556666666677776655

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=8.3e-20  Score=175.79  Aligned_cols=212  Identities=21%  Similarity=0.306  Sum_probs=169.1

Q ss_pred             eeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004745           15 LEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL   93 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~   93 (732)
                      -.+|++.|.+++|+.+- +.||+||.|.+|++||+.++++...+ ..|...|.+++|+|.. +..|++|+.|++|.+.|.
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~  316 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDC  316 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCC-ceEEEeccccceEEeeec
Confidence            45899999999999754 58999999999999999999999999 6899999999999987 689999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745           94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                      +.....         -..+ ...+.|-.++|.|...+.++++..||+|+-+|+|....+                     
T Consensus       317 R~~~~s---------~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~---------------------  365 (463)
T KOG0270|consen  317 RDPSNS---------GKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP---------------------  365 (463)
T ss_pred             cCcccc---------CceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc---------------------
Confidence            953221         1222 245789999999999899999999999999999987532                     


Q ss_pred             cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004745          174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  253 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (732)
                         +.....|...|.++++++....++++++.|+.|++|++....+......         .+         .-+ ...|
T Consensus       366 ---vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~---------~~---------~~~-rl~c  423 (463)
T KOG0270|consen  366 ---VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH---------SF---------KLG-RLHC  423 (463)
T ss_pred             ---eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc---------cc---------ccc-ceee
Confidence               3344457779999999998888999999999999999976543221100         00         001 2556


Q ss_pred             EEEcCCCC-EEEEEecCCeEEEEECCCCC
Q 004745          254 VTFSPNGE-EVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       254 l~~sp~g~-~l~~~~~dg~v~iwd~~~~~  281 (732)
                      .++.|+-. .|+.|+..+.++|||+.+..
T Consensus       424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  424 FALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             cccCCCcceEEEecCccceEEEeecccCh
Confidence            67777654 56777778899999998854

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.7e-18  Score=181.23  Aligned_cols=161  Identities=16%  Similarity=0.274  Sum_probs=129.3

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  138 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  138 (732)
                      ..|...-+.++|.|+  |.+|++|+.||.|++|+.......        | ..+.-+...|.+++...   +.|++|+.+
T Consensus        10 yaht~G~t~i~~d~~--gefi~tcgsdg~ir~~~~~sd~e~--------P-~ti~~~g~~v~~ia~~s---~~f~~~s~~   75 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPD--GEFICTCGSDGDIRKWKTNSDEEE--------P-ETIDISGELVSSIACYS---NHFLTGSEQ   75 (933)
T ss_pred             hhccCceEEEEEcCC--CCEEEEecCCCceEEeecCCcccC--------C-chhhccCceeEEEeecc---cceEEeecc
Confidence            478888999999999  589999999999999987653211        1 22222778888888743   589999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      ++|.+|.+..++.-.                         .......++..++|+.+ |+++|.|+.|-.|++-++....
T Consensus        76 ~tv~~y~fps~~~~~-------------------------iL~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s  129 (933)
T KOG1274|consen   76 NTVLRYKFPSGEEDT-------------------------ILARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSS  129 (933)
T ss_pred             ceEEEeeCCCCCccc-------------------------eeeeeeccceEEEEecC-CcEEEeecCceeEEEEeccccc
Confidence            999999998876320                         01112347899999998 8899999999999999998876


Q ss_pred             CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      ....+                    .+|.. +|.++.|+|++++|++.+.||+|+|||++++
T Consensus       130 ~~~~l--------------------rgh~a-pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~  170 (933)
T KOG1274|consen  130 QEKVL--------------------RGHDA-PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG  170 (933)
T ss_pred             hheee--------------------cccCC-ceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence            65544                    66766 7999999999999999999999999999983

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.83  E-value=2.5e-19  Score=179.71  Aligned_cols=277  Identities=18%  Similarity=0.249  Sum_probs=185.0

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEE--EccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS--IETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~--~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      ++.+..|...|..+.|-|...+|++++.|.++++||+++.+++..  + .+|.+.|.+++|.|.. ...|++|+.||.|.
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~-~GH~~SvkS~cf~~~n-~~vF~tGgRDg~il  170 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLN-LGHTGSVKSECFMPTN-PAVFCTGGRDGEIL  170 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceee-cccccccchhhhccCC-CcceeeccCCCcEE
Confidence            345668999999999999667999999999999999999988766  5 6999999999999986 58999999999999


Q ss_pred             EEEcCCCCCCCC------------C-CCC----CCCceeeccccCceeE---EEEecCCCcEEEEEeC-CCcEEEEECCC
Q 004745           90 LFNLSRFSGRGL------------D-DNA----ITPSALYQCHTRRVKK---LAVEVGNPHVVWSASE-DGTLRQHDFRQ  148 (732)
Q Consensus        90 vwd~~~~~~~~~------------~-~~~----~~~~~~~~~h~~~v~~---l~~~p~~~~~l~s~s~-dg~i~vwd~~~  148 (732)
                      |||++-......            . ...    ...+...+.+...|.+   +.+.. +...||+++. |+.|+|||+++
T Consensus       171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk  249 (720)
T KOG0321|consen  171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRK  249 (720)
T ss_pred             EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecc
Confidence            999985321100            0 000    0112233344444444   44445 3478888887 99999999998


Q ss_pred             CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCC
Q 004745          149 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  228 (732)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~  228 (732)
                      ..........              ....+.........+.++..+.. |.+|.+.+.|+.|++|++.....--.      
T Consensus       250 ~~~~~r~ep~--------------~~~~~~t~skrs~G~~nL~lDss-Gt~L~AsCtD~sIy~ynm~s~s~sP~------  308 (720)
T KOG0321|consen  250 NYTAYRQEPR--------------GSDKYPTHSKRSVGQVNLILDSS-GTYLFASCTDNSIYFYNMRSLSISPV------  308 (720)
T ss_pred             cccccccCCC--------------cccCccCcccceeeeEEEEecCC-CCeEEEEecCCcEEEEeccccCcCch------
Confidence            7643211111              01111122223446778888887 56777677799999999987542111      


Q ss_pred             CCCccccccccccccCCCcccc-EEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccC
Q 004745          229 PPPCVNYFCPMHLSEHGRSSLH-LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  307 (732)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~-i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (732)
                           ..+       .++.... -..-..+|++.+|++|+.|...++|.+.+.+.....               +.+|..
T Consensus       309 -----~~~-------sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~---------------l~Ght~  361 (720)
T KOG0321|consen  309 -----AEF-------SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL---------------LLGHTR  361 (720)
T ss_pred             -----hhc-------cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh---------------hhCcce
Confidence                 111       1221111 122356899999999999999999999997654322               234444


Q ss_pred             CCCCCccCC-CccccccccccCcchhhHHHHHHHhhhhcCC
Q 004745          308 QPPIHDFLQ-TNIRVRGEVATGLGKCRMLVEIARNSLEEGK  347 (732)
Q Consensus       308 ~~~~~~~~~-~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~  347 (732)
                      .|..+.+.| .-..++   +++.|...++     |.+.++-
T Consensus       362 eVt~V~w~pS~~t~v~---TcSdD~~~ki-----W~l~~~l  394 (720)
T KOG0321|consen  362 EVTTVRWLPSATTPVA---TCSDDFRVKI-----WRLSNGL  394 (720)
T ss_pred             EEEEEeeccccCCCce---eeccCcceEE-----EeccCch
Confidence            444554444 122344   7799999998     8886544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.1e-17  Score=174.97  Aligned_cols=231  Identities=19%  Similarity=0.248  Sum_probs=173.7

Q ss_pred             hhccccEeeeccCCceeEEEEcCCC---CEEEEEeCCCcEEEEeCCCCeeEEEEc-------------------------
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRKLLHSIE-------------------------   58 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg---~~lasg~~dg~i~vWd~~~~~~~~~~~-------------------------   58 (732)
                      .+..+++.|.+|..+++.+.+.|..   .++.+++.||+|++||...+..+.++.                         
T Consensus        45 ~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~  124 (792)
T KOG1963|consen   45 ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV  124 (792)
T ss_pred             chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence            3567788999999999999998854   467799999999999987655444431                         


Q ss_pred             -----------------------------------------------------------------------------cCC
Q 004745           59 -----------------------------------------------------------------------------TGH   61 (732)
Q Consensus        59 -----------------------------------------------------------------------------~~h   61 (732)
                                                                                                   ..|
T Consensus       125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~H  204 (792)
T KOG1963|consen  125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHH  204 (792)
T ss_pred             ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhh
Confidence                                                                                         236


Q ss_pred             CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcE
Q 004745           62 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL  141 (732)
Q Consensus        62 ~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  141 (732)
                      ...++|.+++|+  +++++++..||.|.+|.=-..+..      ......+.=|.+.|++++|++++ .+|++|+..|.+
T Consensus       205 tf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~~~~~------~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VL  275 (792)
T KOG1963|consen  205 TFNITCVALSPN--ERYLAAGDSDGRILVWRDFGSSDD------SETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVL  275 (792)
T ss_pred             cccceeEEeccc--cceEEEeccCCcEEEEeccccccc------cccceEEEecccccceeEEecCC-ceEeecccceEE
Confidence            667899999999  499999999999999964321111      12245666789999999999965 888999999999


Q ss_pred             EEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCc
Q 004745          142 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  221 (732)
Q Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~  221 (732)
                      .+|.+.+++.                          ..+|.-..+|..+.++|| +.+.+....|+.|.+..+.+.....
T Consensus       276 v~Wq~~T~~k--------------------------qfLPRLgs~I~~i~vS~d-s~~~sl~~~DNqI~li~~~dl~~k~  328 (792)
T KOG1963|consen  276 VLWQLETGKK--------------------------QFLPRLGSPILHIVVSPD-SDLYSLVLEDNQIHLIKASDLEIKS  328 (792)
T ss_pred             EEEeecCCCc--------------------------ccccccCCeeEEEEEcCC-CCeEEEEecCceEEEEeccchhhhh
Confidence            9999998872                          233445568999999999 7788888899999999887766554


Q ss_pred             ccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCc
Q 004745          222 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  283 (732)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~  283 (732)
                      ++....++..   .+      ..+..+ -.+.++++|..+.++..+..|.|.+||+.+....
T Consensus       329 tIsgi~~~~~---~~------k~~~~~-l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i  380 (792)
T KOG1963|consen  329 TISGIKPPTP---ST------KTRPQS-LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI  380 (792)
T ss_pred             hccCccCCCc---cc------cccccc-cceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence            4433222100   00      011222 3678999997778899999999999999986544

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.83  E-value=7.3e-18  Score=172.05  Aligned_cols=214  Identities=13%  Similarity=0.148  Sum_probs=142.4

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEE-EEECC
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGD   85 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~l-asg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~-s~~~d   85 (732)
                      +.+.++.+.+|. .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+ ..+.. +..+.|+|++  +.++ +++.+
T Consensus        20 t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~-~~~~~~~~~g--~~l~~~~~~~   94 (300)
T TIGR03866        20 TLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-PSGPD-PELFALHPNG--KILYIANEDD   94 (300)
T ss_pred             CCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-cCCCC-ccEEEECCCC--CEEEEEcCCC
Confidence            456667777654 46789999999876 56778899999999999888777 34433 5678999984  6554 55668


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC-cEEEEECCCCCCCCCCCCCCcccce
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      +.|++||+.+..          .+..+. +...+.+++|+|++ .++++++.++ .+.+||..+.+..            
T Consensus        95 ~~l~~~d~~~~~----------~~~~~~-~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~------------  150 (300)
T TIGR03866        95 NLVTVIDIETRK----------VLAEIP-VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIV------------  150 (300)
T ss_pred             CeEEEEECCCCe----------EEeEee-CCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEE------------
Confidence            999999998632          133333 23346889999955 7777777665 4677898765421            


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEE-EEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                        ....            ......+++|+|+ +.+|+ ++..++.|++||+++.+.+..+.....           ..  
T Consensus       151 --~~~~------------~~~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-----------~~--  202 (300)
T TIGR03866       151 --DNVL------------VDQRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFEIP-----------GV--  202 (300)
T ss_pred             --EEEE------------cCCCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc-----------cc--
Confidence              0000            0113457899999 56664 555699999999998765443321100           00  


Q ss_pred             CCCccccEEEEEEcCCCCEEEEE-ecCCeEEEEECCC
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH  279 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~-~~dg~v~iwd~~~  279 (732)
                      . ........++|+|++++++++ +.++.|.+||+++
T Consensus       203 ~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       203 H-PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             c-cccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            0 001124568899999986655 4467899998876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=1.2e-18  Score=160.50  Aligned_cols=239  Identities=11%  Similarity=0.079  Sum_probs=173.3

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      .|..++.+++|.+ ...+++|+-||.|+++|+.++.....  ..|..+|.|+.+++..  ..+++|+.|++|++||.+..
T Consensus        52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i--gth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~  126 (323)
T KOG1036|consen   52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI--GTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNK  126 (323)
T ss_pred             ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceee--ccCCCceEEEEeeccC--CeEEEcccCccEEEEecccc
Confidence            4899999999987 45799999999999999998876543  4799999999999874  78999999999999999952


Q ss_pred             CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004745           97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  176 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (732)
                      ..          ...+. ....|.++...   ++.|+.|+.|..+.+||+++......                      
T Consensus       127 ~~----------~~~~d-~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q----------------------  170 (323)
T KOG1036|consen  127 VV----------VGTFD-QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQ----------------------  170 (323)
T ss_pred             cc----------ccccc-cCceEEEEecc---CCEEEEeecCceEEEEEcccccchhh----------------------
Confidence            21          22332 23478888774   47888999999999999998764311                      


Q ss_pred             ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004745          177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  256 (732)
Q Consensus       177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  256 (732)
                       .....-...+.++++.|+ +.-+++++-||.|.+=.++..+..+....   .-.|-+....     ...-..+|++++|
T Consensus       171 -~reS~lkyqtR~v~~~pn-~eGy~~sSieGRVavE~~d~s~~~~skky---aFkCHr~~~~-----~~~~~yPVNai~F  240 (323)
T KOG1036|consen  171 -RRESSLKYQTRCVALVPN-GEGYVVSSIEGRVAVEYFDDSEEAQSKKY---AFKCHRLSEK-----DTEIIYPVNAIAF  240 (323)
T ss_pred             -hccccceeEEEEEEEecC-CCceEEEeecceEEEEccCCchHHhhhce---eEEeeecccC-----CceEEEEeceeEe
Confidence             111223457899999996 66788999999999877766522111100   0012111100     0011236999999


Q ss_pred             cCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004745          257 SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       257 sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (732)
                      +|-...|++|+.||.|.+||+.+.++...+                .+.+..+.+++|+.||..+|
T Consensus       241 hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~----------------~~~~~SI~slsfs~dG~~LA  290 (323)
T KOG1036|consen  241 HPIHGTFATGGSDGIVNIWDLFNRKRLKQL----------------AKYETSISSLSFSMDGSLLA  290 (323)
T ss_pred             ccccceEEecCCCceEEEccCcchhhhhhc----------------cCCCCceEEEEeccCCCeEE
Confidence            999999999999999999999985543322                22334566778888888888

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=1.2e-18  Score=166.06  Aligned_cols=171  Identities=19%  Similarity=0.294  Sum_probs=135.4

Q ss_pred             cCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCe---------eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745           18 HQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRK---------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus        18 h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~---------~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      ...+|..+.|.++.. +||||+.|..|+||-+..+.         .+..+ ..|..+|+++.|+|+  |++|+||+.+|.
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~--gelLASg~D~g~   88 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPD--GELLASGGDGGE   88 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCC--cCeeeecCCCce
Confidence            357999999999776 99999999999999876432         22334 689999999999999  699999999999


Q ss_pred             EEEEEcCCCC------CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004745           88 VRLFNLSRFS------GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        88 i~vwd~~~~~------~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      |.+|-...-.      ........+...+.+.+|...|..++|+|++ +++++++.|..+++||+..++.          
T Consensus        89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l----------  157 (434)
T KOG1009|consen   89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQL----------  157 (434)
T ss_pred             EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEecccee----------
Confidence            9999776200      0011122234456788999999999999955 8999999999999999999873          


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                                     .....+|...+..++|.|. ..++++-+.|...+.+++...+
T Consensus       158 ---------------~~~~~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~  198 (434)
T KOG1009|consen  158 ---------------LAILDDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQ  198 (434)
T ss_pred             ---------------Eeeccccccccceeecchh-hhhhhhhccCcccceeeeeeee
Confidence                           3334567778999999998 6789999999888888776543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=7.4e-19  Score=177.83  Aligned_cols=219  Identities=15%  Similarity=0.229  Sum_probs=170.0

Q ss_pred             ccEeeeccC-CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           11 QERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        11 ~~~~l~~h~-~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      +...+.|+. ..|-+++|++ +..|++.+.+|.|.-||+.+++.+..+ ....++|.+++.+|.+  ..++.|+.||.+.
T Consensus        60 ~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~--~~l~IgcddGvl~  135 (691)
T KOG2048|consen   60 LEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPEN--TILAIGCDDGVLY  135 (691)
T ss_pred             eeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCcc--ceEEeecCCceEE
Confidence            455666764 6899999995 556888889999999999999999999 7889999999999994  8999999999777


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  169 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  169 (732)
                      .++.....        ...-..+...++.|.++.|+|++ ..+++|+.||.|++||..++....            +...
T Consensus       136 ~~s~~p~~--------I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~------------~~~~  194 (691)
T KOG2048|consen  136 DFSIGPDK--------ITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLH------------IITM  194 (691)
T ss_pred             EEecCCce--------EEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEE------------Eeee
Confidence            77666422        12233444557899999999955 789999999999999999887431            1111


Q ss_pred             cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004745          170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                      +..     ........-|+++.|-.+  ..|++|.+-|+|.+||...+..++.+                    ..|.. 
T Consensus       195 ~~d-----~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS~--------------------~~h~a-  246 (691)
T KOG2048|consen  195 QLD-----RLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQSH--------------------SCHDA-  246 (691)
T ss_pred             ccc-----ccccCCceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhhh--------------------hhhhc-
Confidence            111     111224446788888876  38999999999999999988766554                    33444 


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Q 004745          250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  282 (732)
Q Consensus       250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~  282 (732)
                      .|.+++..+++.++++++.|+.|..|...+.+.
T Consensus       247 dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  247 DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             ceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence            499999999999999999999999998887544

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.82  E-value=2e-18  Score=172.58  Aligned_cols=173  Identities=21%  Similarity=0.259  Sum_probs=129.5

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  138 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  138 (732)
                      .+|...|+.+.|+|-. +.+|++|+.|..|+||.+..+-++.+    ..+-..+.+....|.++.|+|....++++++ .
T Consensus        76 ~~H~d~VtDl~FspF~-D~LLAT~S~D~~VKiW~lp~g~~q~L----Sape~~~g~~~~~vE~l~fHpTaDgil~s~a-~  149 (1012)
T KOG1445|consen   76 AAHGDQVTDLGFSPFA-DELLATCSRDEPVKIWKLPRGHSQKL----SAPEIDVGGGNVIVECLRFHPTADGILASGA-H  149 (1012)
T ss_pred             ecccceeeccCccccc-hhhhhcccCCCeeEEEecCCCccccc----CCcceeecCCceEEEEeecccCcCceEEecc-C
Confidence            6899999999999976 57999999999999999985433322    1122233334557899999998767777665 5


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC-
Q 004745          139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-  217 (732)
Q Consensus       139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~-  217 (732)
                      |.+++||+.+.+                         .+....+|...|.++.|+.| |.+|++.+.|..|+|||.+.. 
T Consensus       150 g~v~i~D~stqk-------------------------~~~el~~h~d~vQSa~WseD-G~llatscKdkqirifDPRa~~  203 (1012)
T KOG1445|consen  150 GSVYITDISTQK-------------------------TAVELSGHTDKVQSADWSED-GKLLATSCKDKQIRIFDPRASM  203 (1012)
T ss_pred             ceEEEEEcccCc-------------------------eeecccCCchhhhccccccC-CceEeeecCCcceEEeCCccCC
Confidence            899999999987                         34455678889999999999 899999999999999999864 


Q ss_pred             CCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC----CeEEEEECCCCCCc
Q 004745          218 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMDVNHAGGR  283 (732)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d----g~v~iwd~~~~~~~  283 (732)
                      ++++..                    .+|.+..=..+.|.-+-..|++.+.+    ..|++||.+....+
T Consensus       204 ~piQ~t--------------------e~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p  253 (1012)
T KOG1445|consen  204 EPIQTT--------------------EGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAP  253 (1012)
T ss_pred             Cccccc--------------------cccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCc
Confidence            233222                    55655444567887665566666554    57999999886543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.80  E-value=1.2e-18  Score=161.44  Aligned_cols=170  Identities=15%  Similarity=0.256  Sum_probs=133.4

Q ss_pred             eeeccCCceeEEEEcC-----CCCEEEEEeCCCcEEEEeCCCC---eeEEEEcc-CCCcCeEEEEEecCCC--CCEEEEE
Q 004745           14 ELEGHQGCVNAISWNS-----KGSLLISGSDDTHINVWSYSSR---KLLHSIET-GHSANVFCTKFVPETS--DELVVSG   82 (732)
Q Consensus        14 ~l~~h~~~V~~l~~s~-----dg~~lasg~~dg~i~vWd~~~~---~~~~~~~~-~h~~~V~~~~~s~~~~--g~~l~s~   82 (732)
                      ..++|+.+|..++|++     ..+.+|+.+. ..+.+|.....   ..++.+.. .|....+.++|+-+.+  ..+++.+
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            3457899999999995     3346677665 57889886543   33333322 3777888899986542  3688999


Q ss_pred             ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004745           83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  162 (732)
Q Consensus        83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  162 (732)
                      +.-|.|+|.|+.+.          .+...+.+|...|+.|.++|+.+++++++|.|..|++|++++...+          
T Consensus       112 G~~GvIrVid~~~~----------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv----------  171 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSG----------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV----------  171 (385)
T ss_pred             cceeEEEEEecchh----------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE----------
Confidence            99999999999863          3367899999999999999999999999999999999999987632          


Q ss_pred             ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004745          163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  217 (732)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~  217 (732)
                        .          .+....+|...|.++.|+++ +.+|++++.|..|++|++...
T Consensus       172 --~----------VfGG~egHrdeVLSvD~~~~-gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  172 --A----------VFGGVEGHRDEVLSVDFSLD-GDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             --E----------EecccccccCcEEEEEEcCC-CCeeeccCCcceEEEEecChh
Confidence              1          12234568889999999998 779999999999999999854

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.80  E-value=6.2e-18  Score=154.19  Aligned_cols=180  Identities=20%  Similarity=0.294  Sum_probs=148.0

Q ss_pred             eccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCC-CCEEEEEECCCcEEEEEc
Q 004745           16 EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-DELVVSGAGDAEVRLFNL   93 (732)
Q Consensus        16 ~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~-g~~l~s~~~dg~i~vwd~   93 (732)
                      .+|+-.|..+.|-| |.-.+.+++-|.+++|||..+.+....|  ..++.|+.-+++|-.. --++++|..|-.|++-|+
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi  175 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI  175 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence            47889999999999 5567888899999999999999998888  5778899999998532 136777788889999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745           94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                      ..+          .+.+.+.+|.+.|.++.|+|...-.|++|+.||.|++||++.-.-+           ...++..++.
T Consensus       176 ~SG----------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc-----------f~~lD~hn~k  234 (397)
T KOG4283|consen  176 ASG----------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC-----------FRVLDQHNTK  234 (397)
T ss_pred             cCC----------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce-----------eEEeecccCc
Confidence            974          3378999999999999999988788999999999999999876433           2334444432


Q ss_pred             c-ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004745          174 K-RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  219 (732)
Q Consensus       174 ~-~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~  219 (732)
                      . ..+...+.|.+.+.+++|..+ +.++++++.|..+++|+..+++.
T Consensus       235 ~~p~~~~n~ah~gkvngla~tSd-~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  235 RPPILKTNTAHYGKVNGLAWTSD-ARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             cCccccccccccceeeeeeeccc-chhhhhccCccceEEeecccCcc
Confidence            2 233346778999999999999 88999999999999999988763

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.80  E-value=2.6e-19  Score=165.72  Aligned_cols=282  Identities=13%  Similarity=0.121  Sum_probs=186.8

Q ss_pred             cCCceeEEEEcCC----CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004745           18 HQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL   93 (732)
Q Consensus        18 h~~~V~~l~~s~d----g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~   93 (732)
                      |......++|+-|    ..+||.|+.-|.|+|.|+.++++...+ .+|...|+.+.|.|.. .+++++++.|..|++|++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~-~qlvls~SkD~svRlwnI  165 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWNI  165 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCC-CcEEEEecCCceEEEEec
Confidence            7788888999853    348999999999999999999999999 7999999999999985 579999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCC---CCCcccceEEeecc
Q 004745           94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG---SSHQECRNILLDLR  170 (732)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~  170 (732)
                      ++.....       ...-..+|.+.|.++.|++++ .+|++++.|.+|++|++...+....+.   .-.++....-+-..
T Consensus       166 ~~~~Cv~-------VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~  237 (385)
T KOG1034|consen  166 QTDVCVA-------VFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP  237 (385)
T ss_pred             cCCeEEE-------EecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence            9742211       123456899999999999966 799999999999999998654321000   00000000000000


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC-CCCCCcccccCCCCCCccccccccccccCCCccc
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                      .-....+.....|...|-|+.|-   |+++++-+-++.|..|-.. -.+.+....   ++..+...+....+.   ....
T Consensus       238 ~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vk---p~es~~Ti~~~~~~~---~c~i  308 (385)
T KOG1034|consen  238 KTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVK---PPESATTILGEFDYP---MCDI  308 (385)
T ss_pred             ccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccC---CCccceeeeeEeccC---ccce
Confidence            00111122334577788888887   5699999999999999883 222222211   111111111111110   1111


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcce-eeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccC
Q 004745          250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATG  328 (732)
Q Consensus       250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  328 (732)
                      +....+|.|-++.|+.|.+.|.|++||++....+.. ...+             ..-...+...+|+.||..+.   ...
T Consensus       309 Wfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~-------------s~~~~tVRQ~sfS~dgs~lv---~vc  372 (385)
T KOG1034|consen  309 WFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH-------------SKSGSTVRQTSFSRDGSILV---LVC  372 (385)
T ss_pred             EEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe-------------ccccceeeeeeecccCcEEE---EEe
Confidence            334456678889999999999999999998543211 1111             11223567788999998887   666


Q ss_pred             cchhhH
Q 004745          329 LGKCRM  334 (732)
Q Consensus       329 ~d~~~~  334 (732)
                      .|+++-
T Consensus       373 dd~~Vw  378 (385)
T KOG1034|consen  373 DDGTVW  378 (385)
T ss_pred             CCCcEE
Confidence            666543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=2.7e-18  Score=170.42  Aligned_cols=249  Identities=19%  Similarity=0.296  Sum_probs=183.0

Q ss_pred             hhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC--------CCeeEEEEccCCCcCeEEEEEecCCCCC
Q 004745            6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--------SRKLLHSIETGHSANVFCTKFVPETSDE   77 (732)
Q Consensus         6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~--------~~~~~~~~~~~h~~~V~~~~~s~~~~g~   77 (732)
                      .++.....++.-|.+.|+.++|.|-...|++++.||++++|+++        .-+.+.+| .+|.++|.|++..++  ++
T Consensus       281 ~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n--~~  357 (577)
T KOG0642|consen  281 TKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSN--GE  357 (577)
T ss_pred             heecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCC--ce
Confidence            33445556889999999999999999999999999999999993        23577888 799999999999998  59


Q ss_pred             EEEEEECCCcEEEEEcCCCCCCCCCCCC-CCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004745           78 LVVSGAGDAEVRLFNLSRFSGRGLDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  156 (732)
Q Consensus        78 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  156 (732)
                      .+++|+.||+|+.|++. .+....+... ......+.||.+.|+.+++++.. ..|++|+.||+++.|+......+....
T Consensus       358 ~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~~f~~  435 (577)
T KOG0642|consen  358 HCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPCTFGE  435 (577)
T ss_pred             EEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCccccCC
Confidence            99999999999999887 3333221111 12356788999999999999954 778899999999999987776531111


Q ss_pred             CCCccc---------------------ceEEeeccCCccccccC-----CCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004745          157 SSHQEC---------------------RNILLDLRCGAKRSLAD-----PPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  210 (732)
Q Consensus       157 ~~~~~~---------------------~~~~~~~~~~~~~~~~~-----~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~  210 (732)
                      ......                     ...+.+........+..     .+.....+.-+.+.|. ..+.+++..|+.|+
T Consensus       436 ~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~-~~~~~~~hed~~Ir  514 (577)
T KOG0642|consen  436 PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT-ADITFTAHEDRSIR  514 (577)
T ss_pred             ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC-CCeeEecccCCcee
Confidence            000000                     00011111111101110     1112235667788888 57999999999999


Q ss_pred             EEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      ++|..+++++...                    ..|.. .++++++.|+|.+|++++.|+.|++|.+....
T Consensus       515 ~~dn~~~~~l~s~--------------------~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  515 FFDNKTGKILHSM--------------------VAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             cccccccccchhe--------------------eeccc-eecceeecCCCceEEeecCCceeehhhccchh
Confidence            9999999877654                    33444 59999999999999999999999999987643

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.80  E-value=1.2e-18  Score=169.41  Aligned_cols=219  Identities=18%  Similarity=0.271  Sum_probs=172.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCC
Q 004745           24 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  103 (732)
Q Consensus        24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~  103 (732)
                      |++......++++|+..++|+|||++ .+.+++++.+|+..|+++.+.-.  +.+|++++..|.|.|..+.++..     
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih~~~t~~~-----  155 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIHGTKTKQK-----  155 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEEecccCcc-----
Confidence            44444445899999999999999999 45555555899999999999887  58999999999999999987532     


Q ss_pred             CCCCCceeecc-ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCC
Q 004745          104 NAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  182 (732)
Q Consensus       104 ~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (732)
                           ...+.. ....|.-+.|+|....+|.+++.+|.|.+||+....+.                        +.....
T Consensus       156 -----tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~------------------------~~~~~~  206 (673)
T KOG4378|consen  156 -----TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI------------------------FHASEA  206 (673)
T ss_pred             -----ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc------------------------cchhhh
Confidence                 122322 23567799999988788899999999999999776532                        334455


Q ss_pred             CccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCE
Q 004745          183 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE  262 (732)
Q Consensus       183 ~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~  262 (732)
                      |..+...|+|+|.+..+|++.+.|..|.+||.+..+....+          .+            ..+.+.++|+++|.+
T Consensus       207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l----------~y------------~~Plstvaf~~~G~~  264 (673)
T KOG4378|consen  207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL----------TY------------SHPLSTVAFSECGTY  264 (673)
T ss_pred             ccCCcCcceecCCccceEEEecccceEEEeeccccccccee----------ee------------cCCcceeeecCCceE
Confidence            77788999999998999999999999999999976543322          11            116889999999999


Q ss_pred             EEEEecCCeEEEEECCCCCCcc-eeeecCCCCceeeeccC
Q 004745          263 VLLSYSGEHVYLMDVNHAGGRA-MRYTVGDASKIMSFTPT  301 (732)
Q Consensus       263 l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~  301 (732)
                      |++|+..|.|..||++..+.+. ++..+...+..++|.|.
T Consensus       265 L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  265 LCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             EEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence            9999999999999999866554 44456666777777654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.80  E-value=9.9e-19  Score=170.30  Aligned_cols=222  Identities=13%  Similarity=0.224  Sum_probs=174.4

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      ..-|+++...|||+.|++|+.-.++.|||+.....  ...+ ....-..++++.+|+.  +..++|..||.|.|||+.+.
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikael-tssapaCyALa~spDa--kvcFsccsdGnI~vwDLhnq  541 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDA--KVCFSCCSDGNIAVWDLHNQ  541 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhc-CCcchhhhhhhcCCcc--ceeeeeccCCcEEEEEcccc
Confidence            45688899999999999999999999999986543  2333 3444567889999995  89999999999999999963


Q ss_pred             CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCC--------CCCCCCcccceEEee
Q 004745           97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP--------PAGSSHQECRNILLD  168 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~--------~~~~~~~~~~~~~~~  168 (732)
                                ..++.|++|.+.+.||..++++ ..|.||+-|.+||.||++++..+.        +...-.+......+.
T Consensus       542 ----------~~VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavG  610 (705)
T KOG0639|consen  542 ----------TLVRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVG  610 (705)
T ss_pred             ----------eeeecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeee
Confidence                      3488999999999999999955 889999999999999999987652        122222333445555


Q ss_pred             ccCCccccccC-------CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004745          169 LRCGAKRSLAD-------PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       169 ~~~~~~~~~~~-------~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                      .+++....+..       ..-|..-|.++.|.+. |+++++.+.|+.+..|...-+..+...                  
T Consensus       611 Mens~vevlh~skp~kyqlhlheScVLSlKFa~c-GkwfvStGkDnlLnawrtPyGasiFqs------------------  671 (705)
T KOG0639|consen  611 MENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQS------------------  671 (705)
T ss_pred             cccCcEEEEecCCccceeecccccEEEEEEeccc-CceeeecCchhhhhhccCccccceeec------------------
Confidence            55554433332       2346678899999999 899999999999999998877544322                  


Q ss_pred             ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 004745          242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  277 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~  277 (732)
                          .....|.++.++.|.+++++|+.|....+|.+
T Consensus       672 ----kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  672 ----KESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ----cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence                22336999999999999999999998888865

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.7e-17  Score=154.76  Aligned_cols=199  Identities=13%  Similarity=0.213  Sum_probs=151.5

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCcee
Q 004745           32 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL  111 (732)
Q Consensus        32 ~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  111 (732)
                      ..+|++-..|.|++||..+++.+..+ +++...++.+.|.....+..+.+|+.||+|++||++.....        ....
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~--------a~~~  111 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES--------ARIS  111 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh--------hhee
Confidence            56889999999999999999999999 89999999999988533689999999999999999975432        2445


Q ss_pred             ecccc-CceeEEEEecCCCcEEEEEe----CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccc
Q 004745          112 YQCHT-RRVKKLAVEVGNPHVVWSAS----EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS  186 (732)
Q Consensus       112 ~~~h~-~~v~~l~~~p~~~~~l~s~s----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (732)
                      +..+. .+..+++..- ..+++++|.    .+-.|.+||++..+...                       -.-...|...
T Consensus       112 ~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-----------------------~~~~eSH~DD  167 (376)
T KOG1188|consen  112 WTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLL-----------------------RQLNESHNDD  167 (376)
T ss_pred             ccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchh-----------------------hhhhhhccCc
Confidence            55555 4566666654 336777664    35579999999887420                       1112346779


Q ss_pred             eEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC-CEEEE
Q 004745          187 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLL  265 (732)
Q Consensus       187 v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g-~~l~~  265 (732)
                      |+++.|+|.++++|++|+.||.|.|||+.....-..+.         ..        -.+.. .|..+.|..++ +.|.+
T Consensus       168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~---------~v--------iN~~s-SI~~igw~~~~ykrI~c  229 (376)
T KOG1188|consen  168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL---------HV--------INHGS-SIHLIGWLSKKYKRIMC  229 (376)
T ss_pred             ceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH---------Hh--------hcccc-eeeeeeeecCCcceEEE
Confidence            99999999999999999999999999998653211110         00        12222 59999999887 45888


Q ss_pred             EecCCeEEEEECCCCC
Q 004745          266 SYSGEHVYLMDVNHAG  281 (732)
Q Consensus       266 ~~~dg~v~iwd~~~~~  281 (732)
                      -+......+|+++.+.
T Consensus       230 lTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  230 LTHMETFAIYELEDGS  245 (376)
T ss_pred             EEccCceeEEEccCCC
Confidence            9999999999999853

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=4.6e-19  Score=182.67  Aligned_cols=126  Identities=27%  Similarity=0.494  Sum_probs=116.9

Q ss_pred             hhhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745            4 SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus         4 ~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      .++++++.++.|.||...|+|+.|...|.++++|+.|..|+||..+++.++... .||.+.|+.++.+.+  ..++++++
T Consensus       175 tmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~--n~~iaaaS  251 (1113)
T KOG0644|consen  175 TMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSSN--NTMIAAAS  251 (1113)
T ss_pred             HHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccchh--hhhhhhcc
Confidence            588999999999999999999999999999999999999999999999999999 899999999999887  37899999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  147 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~  147 (732)
                      .|..|++|.+..+          .++..+.+|++.|++|+|+|-     .+.+.||++++||.+
T Consensus       252 ~D~vIrvWrl~~~----------~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  252 NDKVIRVWRLPDG----------APVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDAR  300 (1113)
T ss_pred             cCceEEEEecCCC----------chHHHHhccccceeeeccCcc-----ccCCCCCceEecccc
Confidence            9999999999863          458899999999999999992     378899999999987

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=7.3e-18  Score=159.86  Aligned_cols=231  Identities=17%  Similarity=0.276  Sum_probs=165.9

Q ss_pred             EeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe-------eEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745           13 RELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~-------~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      -.+.||+++|..++|+| +...||+||.|.+|.||.+-.+.       .+..+ .+|...|.-++|+|.. .+.|+|++.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrVg~V~wHPtA-~NVLlsag~  152 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRVGLVQWHPTA-PNVLLSAGS  152 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEE-eecceeEEEEeecccc-hhhHhhccC
Confidence            35679999999999999 66789999999999999986442       34455 7999999999999987 589999999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      |.+|.+||+.++..          +..+. |.+.|.++.|+.+ +.+|++.+.|..|||||.++++..... ..|.    
T Consensus       153 Dn~v~iWnv~tgea----------li~l~-hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~~v~e~-~~he----  215 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEA----------LITLD-HPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHE----  215 (472)
T ss_pred             CceEEEEeccCCce----------eeecC-CCCeEEEEEeccC-CceeeeecccceeEEEcCCCCcEeeec-cccc----
Confidence            99999999998542          34455 9999999999995 489999999999999999998743211 1111    


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe---CCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                                       ++  .-..+-|-.+ +.++-||.   ++..+-+||..+.+.--.+          ..+     
T Consensus       216 -----------------G~--k~~Raifl~~-g~i~tTGfsr~seRq~aLwdp~nl~eP~~~----------~el-----  260 (472)
T KOG0303|consen  216 -----------------GA--KPARAIFLAS-GKIFTTGFSRMSERQIALWDPNNLEEPIAL----------QEL-----  260 (472)
T ss_pred             -----------------CC--CcceeEEecc-CceeeeccccccccceeccCcccccCccee----------EEe-----
Confidence                             11  1233445555 55555553   3688999998875421111          000     


Q ss_pred             ccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCc---ceeeecCCCCceeeeccC
Q 004745          242 SEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGR---AMRYTVGDASKIMSFTPT  301 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~  301 (732)
                        ....  .|.---|.|+.++++.++. |+.||.|.+.+...-   ...+...++.+.+.|.|.
T Consensus       261 --DtSn--Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  261 --DTSN--GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             --ccCC--ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence              1111  2665678899998877766 999999999884421   122344566666666664

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=5.8e-18  Score=163.21  Aligned_cols=194  Identities=18%  Similarity=0.269  Sum_probs=154.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCee--------------E------EEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           30 KGSLLISGSDDTHINVWSYSSRKL--------------L------HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        30 dg~~lasg~~dg~i~vWd~~~~~~--------------~------~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      .|+++|.|..|..|.|||+.-...              .      ...-.+|+.+|..++|...- -+.|+|||.|.+|+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~-~nVLaSgsaD~TV~  269 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF-RNVLASGSADKTVK  269 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc-ceeEEecCCCceEE
Confidence            367999999999999999752110              0      00013799999999998875 47999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  169 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  169 (732)
                      +||+.++          +|..++..|...|.++.|+|..+.+|++|+.|++|.+.|.+.....           ..-|. 
T Consensus       270 lWD~~~g----------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-----------~~~wk-  327 (463)
T KOG0270|consen  270 LWDVDTG----------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-----------GKEWK-  327 (463)
T ss_pred             EEEcCCC----------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc-----------CceEE-
Confidence            9999975          3467788899999999999999999999999999999999964321           01111 


Q ss_pred             cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC-CCCcccccCCCCCCccccccccccccCCCcc
Q 004745          170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                                   ..+.|-.++|.|.....+++++.||+|+-+|+|+. +++.++                    ..|.+
T Consensus       328 -------------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~--------------------~AHd~  374 (463)
T KOG0270|consen  328 -------------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL--------------------KAHDD  374 (463)
T ss_pred             -------------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE--------------------EeccC
Confidence                         23378889999988889999999999999999976 333332                    55666


Q ss_pred             ccEEEEEEcCCC-CEEEEEecCCeEEEEECCCC
Q 004745          249 LHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       249 ~~i~~l~~sp~g-~~l~~~~~dg~v~iwd~~~~  280 (732)
                       +|.+|++++.- .+|++++.|+.|++|++...
T Consensus       375 -~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  375 -EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             -CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence             69999999854 57888999999999999863

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.77  E-value=2.7e-17  Score=149.76  Aligned_cols=236  Identities=16%  Similarity=0.254  Sum_probs=171.9

Q ss_pred             hccccEeee-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee-EEEEc----cCCCcCeEEEEEecCCCCCEEEE
Q 004745            8 RLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-LHSIE----TGHSANVFCTKFVPETSDELVVS   81 (732)
Q Consensus         8 ~~~~~~~l~-~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~-~~~~~----~~h~~~V~~~~~s~~~~g~~l~s   81 (732)
                      +++++..|. .+-+.|.|+.|.|++..||+-. |..|.+|++..+.. +..+.    ..|....++-+|+|..+|+.+++
T Consensus       111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t  189 (370)
T KOG1007|consen  111 TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT  189 (370)
T ss_pred             hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence            355666665 5667999999999999999875 78999999987765 33332    24667789999999766788877


Q ss_pred             EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004745           82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      . .|+++..||+++.+..         ...-..|...|..+.|+|+...+|++|+.||.|++||.+..+.          
T Consensus       190 t-~d~tl~~~D~RT~~~~---------~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~----------  249 (370)
T KOG1007|consen  190 T-SDSTLQFWDLRTMKKN---------NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF----------  249 (370)
T ss_pred             e-CCCcEEEEEccchhhh---------cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc----------
Confidence            5 4899999999975321         3344578889999999998888999999999999999998764          


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCC----C----CCcc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS----P----PPCV  233 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~----~----~~~~  233 (732)
                                    ++...++|...|.++.|+|....++++|+.|..|.+|..........+.....    .    ..-.
T Consensus       250 --------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~  315 (370)
T KOG1007|consen  250 --------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV  315 (370)
T ss_pred             --------------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence                          46667788889999999998888999999999999998765432222211100    0    0000


Q ss_pred             cccccccccc-CCCccccEEEEEEcCCCCE-EEEEecCCeEEEEECCC
Q 004745          234 NYFCPMHLSE-HGRSSLHLTHVTFSPNGEE-VLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       234 ~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~-l~~~~~dg~v~iwd~~~  279 (732)
                      +.+....+.. ..|.+ .|++++|+.-..+ +++-+.||.+.|=.+..
T Consensus       316 kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  316 KPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            0011111100 33555 5999999986665 55668899998876654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=7.2e-17  Score=156.29  Aligned_cols=163  Identities=16%  Similarity=0.261  Sum_probs=130.2

Q ss_pred             CCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc
Q 004745           61 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT  140 (732)
Q Consensus        61 h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  140 (732)
                      ..+.|+++.|+|..  .+|++++.|++++||-+.....        ..++.+.--..+|.+..|.|++...+++++....
T Consensus       212 s~~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N--------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky  281 (514)
T KOG2055|consen  212 SHGGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVN--------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKY  281 (514)
T ss_pred             CcCCceEEEecCCC--ceEEEecCCCcEEEEEecCccC--------hhheeeeeccCccceeeecCCCceEEEecccceE
Confidence            34789999999995  8999999999999999985332        2356666667899999999977558889999999


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC-ccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004745          141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  219 (732)
Q Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~  219 (732)
                      ++.||+.+.+...                       +..+.++ ...+.....+++ +++|+..+..|.|.+-...+++.
T Consensus       282 ~ysyDle~ak~~k-----------------------~~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLhakT~el  337 (514)
T KOG2055|consen  282 LYSYDLETAKVTK-----------------------LKPPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLHAKTKEL  337 (514)
T ss_pred             EEEeecccccccc-----------------------ccCCCCcccchhheeEecCC-CCeEEEcccCceEEeehhhhhhh
Confidence            9999998877431                       1111111 124567778898 78999999999999999998887


Q ss_pred             CcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          220 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +.++..                      .+.|..++|+.+|+.|++.+.+|.|++||++.
T Consensus       338 i~s~Ki----------------------eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~  375 (514)
T KOG2055|consen  338 ITSFKI----------------------EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ  375 (514)
T ss_pred             hheeee----------------------ccEEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence            765521                      22599999999999999999999999999988

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.76  E-value=2.5e-15  Score=161.62  Aligned_cols=207  Identities=28%  Similarity=0.443  Sum_probs=157.2

Q ss_pred             eeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-eEEEEccC-CCcCeEEEEE-ecCCCCC-EEEEEEC-CCcE
Q 004745           14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETG-HSANVFCTKF-VPETSDE-LVVSGAG-DAEV   88 (732)
Q Consensus        14 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~-~~~~~~~~-h~~~V~~~~~-s~~~~g~-~l~s~~~-dg~i   88 (732)
                      .+..|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+ .. +...+..+.+ +++.  . +++..+. |+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL-EGLHDSSVSKLALSSPDG--NSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEE-eccCCCceeeEEEECCCc--ceEEeccCCCCccE
Confidence            567899999999999999999999999999999998886 66666 34 3347777777 6663  4 5555455 9999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      .+|++...         ......+..|...|..+.|+|++ ..+++++. |+.+++|++.....                
T Consensus       137 ~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------  190 (466)
T COG2319         137 KLWDLSTP---------GKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKP----------------  190 (466)
T ss_pred             EEEEecCC---------CeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCce----------------
Confidence            99999851         02367788899999999999965 57777775 99999999987431                


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCC-EEEEEeCCCeEEEEECCCCCCCc-ccccCCCCCCccccccccccccCC
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRRMLPPLT-SCQKRMSPPPCVNYFCPMHLSEHG  245 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~tg~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  245 (732)
                               +.....|...+.+++|+|+ +. .+++++.|+.|++||...+..+. .+                    .+
T Consensus       191 ---------~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~d~~i~~wd~~~~~~~~~~~--------------------~~  240 (466)
T COG2319         191 ---------LSTLAGHTDPVSSLAFSPD-GGLLIASGSSDGTIRLWDLSTGKLLRSTL--------------------SG  240 (466)
T ss_pred             ---------EEeeccCCCceEEEEEcCC-cceEEEEecCCCcEEEEECCCCcEEeeec--------------------CC
Confidence                     1222236778999999988 54 55555899999999887544332 11                    34


Q ss_pred             CccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      |... . -..|+|++.++++++.|+.+++|++....
T Consensus       241 ~~~~-~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         241 HSDS-V-VSSFSPDGSLLASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             CCcc-e-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence            4442 2 22899999889999999999999999754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.76  E-value=2.9e-17  Score=149.71  Aligned_cols=231  Identities=15%  Similarity=0.266  Sum_probs=168.8

Q ss_pred             ccCCceeEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCeeE----EEE----ccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745           17 GHQGCVNAISWNSKG-----SLLISGSDDTHINVWSYSSRKLL----HSI----ETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg-----~~lasg~~dg~i~vWd~~~~~~~----~~~----~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      .|.-+++.+.|.|+.     .+|||++.  .+|+|.+...+..    ..+    ...+..++++..|..-. .++|.+++
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d-p~~igtSS  170 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD-PNLIGTSS  170 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC-cceeEeec
Confidence            588899999999976     47777653  6999998742211    111    12466889999998764 58999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      -|-+..|||++++...       .....+..|...|..|+|...+.+.||+.|.||.+|+||++..+.-           
T Consensus       171 iDTTCTiWdie~~~~~-------~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS-----------  232 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSG-------TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS-----------  232 (364)
T ss_pred             ccCeEEEEEEeecccc-------ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-----------
Confidence            9999999999975211       1245677899999999999977789999999999999999987632           


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-CeEEEEECCCCC-CCcccccCCCCCCcccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-g~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                                 ..+.+.+....++..++|++++.+++|+-..| ..|.|.|++... ++..+                  
T Consensus       233 -----------TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L------------------  283 (364)
T KOG0290|consen  233 -----------TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL------------------  283 (364)
T ss_pred             -----------eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh------------------
Confidence                       11222222244788899999989999988776 469999998632 11111                  


Q ss_pred             ccCCCccccEEEEEEcCCC-CEEEEEecCCeEEEEECCCCCC-----cceeeecCCCCceeeecc
Q 004745          242 SEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGG-----RAMRYTVGDASKIMSFTP  300 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp~g-~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~  300 (732)
                        .+|.. .|+.++|.|.. ..|++++.|.++.|||+.....     +...+..+..++.+.|++
T Consensus       284 --~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~  345 (364)
T KOG0290|consen  284 --RNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSS  345 (364)
T ss_pred             --hcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecc
Confidence              66777 59999999964 6899999999999999987543     222333444444555544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=7.3e-18  Score=181.03  Aligned_cols=229  Identities=22%  Similarity=0.319  Sum_probs=171.5

Q ss_pred             CCceeEEEEcCCCCE----EEEEeCCCcEEEEeCCCC------eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745           19 QGCVNAISWNSKGSL----LISGSDDTHINVWSYSSR------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~----lasg~~dg~i~vWd~~~~------~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      ...-+.++|.+.|..    ||.|..||.|.+||...-      ..+.+. ..|.+.|..+.|++.. ++.|++|+.||.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~q-~nlLASGa~~geI  141 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPFQ-GNLLASGADDGEI  141 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh-cccCCceeeeeccccC-CceeeccCCCCcE
Confidence            456788999997765    888899999999997642      244555 6899999999999997 6899999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      .|||+...+...      .+-  -..-.+.|.+++|+....++|++++.+|.+.|||++..+.+...             
T Consensus       142 ~iWDlnn~~tP~------~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l-------------  200 (1049)
T KOG0307|consen  142 LIWDLNKPETPF------TPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL-------------  200 (1049)
T ss_pred             EEeccCCcCCCC------CCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc-------------
Confidence            999999743211      110  12245789999999877899999999999999999998643211             


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC---CeEEEEECCCCC-CCcccccCCCCCCccccccccccccC
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---g~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                               .... ....+..++|+|++...|++++.|   -.|.+||+|... +++             .+       .
T Consensus       201 ---------s~~~-~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k-------------~~-------~  250 (1049)
T KOG0307|consen  201 ---------SDTP-GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK-------------IL-------E  250 (1049)
T ss_pred             ---------ccCC-CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh-------------hh-------c
Confidence                     1111 113678999999988888888876   469999998643 221             11       5


Q ss_pred             CCccccEEEEEEcCCC-CEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccC
Q 004745          245 GRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  301 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  301 (732)
                      +|.. .|.++.|++.+ .+|++++.|+.|.+|+.++++....+-..++....+.|.|.
T Consensus       251 ~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr  307 (1049)
T KOG0307|consen  251 GHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPR  307 (1049)
T ss_pred             cccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCC
Confidence            5666 49999999966 78899999999999999997655544444444555555554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.75  E-value=1.7e-16  Score=159.97  Aligned_cols=176  Identities=18%  Similarity=0.305  Sum_probs=135.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCC
Q 004745           21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  100 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~  100 (732)
                      .|+.++|-|||..|+.+.. ..+.|||+..|..+..+ ++|++.|+|++|+.+  |++++||+.|..|.+|+.+...   
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtL-KgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~klEG---   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKLEG---   86 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCccccccc-ccccceEEEEEEccC--CceeccCCCceeEEEecccccc---
Confidence            8999999999998777654 57999999999999999 899999999999999  6999999999999999876311   


Q ss_pred             CCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCC
Q 004745          101 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  180 (732)
Q Consensus       101 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (732)
                              +.. ..|.+.|.|+.|+|- .+.+++|+-. ..-+|........                           .
T Consensus        87 --------~Lk-YSH~D~IQCMsFNP~-~h~LasCsLs-dFglWS~~qK~V~---------------------------K  128 (1081)
T KOG1538|consen   87 --------ILK-YSHNDAIQCMSFNPI-THQLASCSLS-DFGLWSPEQKSVS---------------------------K  128 (1081)
T ss_pred             --------eee-eccCCeeeEeecCch-HHHhhhcchh-hccccChhhhhHH---------------------------h
Confidence                    222 359999999999994 4888898864 4678987654311                           0


Q ss_pred             CCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC
Q 004745          181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  260 (732)
Q Consensus       181 ~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g  260 (732)
                      ......+.+++|..| |.+|+.|-.||+|.|-+... ++...++                  ..|..+.+|++++|+|..
T Consensus       129 ~kss~R~~~CsWtnD-GqylalG~~nGTIsiRNk~g-Eek~~I~------------------Rpgg~Nspiwsi~~~p~s  188 (1081)
T KOG1538|consen  129 HKSSSRIICCSWTND-GQYLALGMFNGTISIRNKNG-EEKVKIE------------------RPGGSNSPIWSICWNPSS  188 (1081)
T ss_pred             hhhheeEEEeeecCC-CcEEEEeccCceEEeecCCC-CcceEEe------------------CCCCCCCCceEEEecCCC
Confidence            112337889999998 89999999999999885432 2211111                  133445589999999965


Q ss_pred             C
Q 004745          261 E  261 (732)
Q Consensus       261 ~  261 (732)
                      .
T Consensus       189 g  189 (1081)
T KOG1538|consen  189 G  189 (1081)
T ss_pred             C
Confidence            3

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.74  E-value=7.2e-17  Score=156.20  Aligned_cols=227  Identities=17%  Similarity=0.180  Sum_probs=167.6

Q ss_pred             hhccccEeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745            7 RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      +...-+..+..|..+|.+|.|+|. ...+.+.|+||+|++-|+++...  +..+ ......+..+.|+.+.  ..++.+.
T Consensus       222 ~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~~~e~--~~vl~~~  298 (498)
T KOG4328|consen  222 KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDFSAES--RSVLFGD  298 (498)
T ss_pred             CccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc-CccceeeeeccccCCC--ccEEEee
Confidence            344456677889999999999994 46888999999999999987643  3333 2234556778888874  5666777


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      .=|.+.+||+++....         ...+.-|...|++++++|..+.+|+|+|.|++.+|||++.......         
T Consensus       299 ~~G~f~~iD~R~~~s~---------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s---------  360 (498)
T KOG4328|consen  299 NVGNFNVIDLRTDGSE---------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS---------  360 (498)
T ss_pred             cccceEEEEeecCCcc---------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC---------
Confidence            6679999999986432         3556668889999999999999999999999999999988653210         


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC----CCCCCcccccCCCCCCcccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR----MLPPLTSCQKRMSPPPCVNYFCPM  239 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~  239 (732)
                                  ++.....|.-.|.+..|+|.++. |+|.+.|..|||||..    ...++..+..              
T Consensus       361 ------------p~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~H--------------  413 (498)
T KOG4328|consen  361 ------------PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPH--------------  413 (498)
T ss_pred             ------------cceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeec--------------
Confidence                        12233457779999999999776 9999999999999984    3222222211              


Q ss_pred             ccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCc
Q 004745          240 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  283 (732)
Q Consensus       240 ~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~  283 (732)
                       ....+..- .....+|.|+..++++|-.-..|-|||-..++.+
T Consensus       414 -n~~t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v  455 (498)
T KOG4328|consen  414 -NNRTGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMV  455 (498)
T ss_pred             -cCcccccc-cchhheeCCCccEEEEeccCcceeEEcCCCCEEe
Confidence             10011111 2446789999999999999889999998875533

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=3.6e-17  Score=155.18  Aligned_cols=177  Identities=20%  Similarity=0.249  Sum_probs=144.1

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  138 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  138 (732)
                      .+|+++|..++|+|.. ++.|+|||.|.+|.||.+....   +...-.+++..+.+|...|..++|+|.-.+.|++++.|
T Consensus        78 ~GHt~~vLDi~w~Pfn-D~vIASgSeD~~v~vW~IPe~~---l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFN-DCVIASGSEDTKVMVWQIPENG---LTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             cCccccccccccCccC-CceeecCCCCceEEEEECCCcc---cccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            5899999999999986 6899999999999999998532   11222477899999999999999999988999999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      ..|.+|++.+++..                         ... .|...|++++|+.+ |.+|++.+.|..|||||.++++
T Consensus       154 n~v~iWnv~tgeal-------------------------i~l-~hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~  206 (472)
T KOG0303|consen  154 NTVSIWNVGTGEAL-------------------------ITL-DHPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGT  206 (472)
T ss_pred             ceEEEEeccCCcee-------------------------eec-CCCCeEEEEEeccC-CceeeeecccceeEEEcCCCCc
Confidence            99999999999832                         111 27779999999999 7899999999999999999987


Q ss_pred             CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec---CCeEEEEECCCCCCccee
Q 004745          219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMR  286 (732)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~---dg~v~iwd~~~~~~~~~~  286 (732)
                      .+..-                    .+|.+..-..+.|-.+|.++.+|-.   +.++-+||..+...+..+
T Consensus       207 ~v~e~--------------------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~  257 (472)
T KOG0303|consen  207 VVSEG--------------------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIAL  257 (472)
T ss_pred             Eeeec--------------------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCccee
Confidence            65432                    3455555667888899996655533   689999998886655433

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=8.1e-17  Score=160.04  Aligned_cols=139  Identities=20%  Similarity=0.265  Sum_probs=107.3

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  138 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  138 (732)
                      ..|...|..+.|.|.+  ..|++++.||+|++|++..  .........+++.++.+|.++|.|+++.+ ++..+++|+-|
T Consensus       291 ~s~~d~ir~l~~~~se--p~lit~sed~~lk~WnLqk--~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~D  365 (577)
T KOG0642|consen  291 RSHDDCIRALAFHPSE--PVLITASEDGTLKLWNLQK--AKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGID  365 (577)
T ss_pred             ecchhhhhhhhcCCCC--CeEEEeccccchhhhhhcc--cCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccC
Confidence            5788999999999985  7999999999999999943  22222344578999999999999999998 55889999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      |+|+.|++....-.-           -.++    .........+|...|+.+++++. ...|++++.||++|+|+.....
T Consensus       366 g~I~~w~~p~n~dp~-----------ds~d----p~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~~~~~  429 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDPD-----------DSYD----PSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEPTEES  429 (577)
T ss_pred             ceeeeeccCCCCCcc-----------cccC----cchhccceeccccceeeeeeccc-ccceeeecCCceEEeeccCCcC
Confidence            999999886322110           0000    00112234578889999999998 6789999999999999987654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.72  E-value=2.6e-16  Score=145.63  Aligned_cols=232  Identities=16%  Similarity=0.147  Sum_probs=168.2

Q ss_pred             CCceeEEEEc-------CCCCEEEEEeCCCcEEEEeCCCCeeEEEEccC--CCc---CeEEEEEecCCCCCEEEEEECCC
Q 004745           19 QGCVNAISWN-------SKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSA---NVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus        19 ~~~V~~l~~s-------~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~--h~~---~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      ...|+..+|-       |+..++|+.+.+.-|.+||.-+|+....+ .+  |..   +..+++|+|+  |.+|++| ...
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~D--GeqlfaG-ykr  179 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPD--GEQLFAG-YKR  179 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccch-hhhhhHHhhhhheeEEecCC--CCeEeec-ccc
Confidence            3556666664       57789999999999999999999988777 33  333   3468999999  5888865 578


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      .|++||+..+...+..  .....+.-.+..+-+.+++|+|.+...++.++....+-|+.-....+               
T Consensus       180 cirvFdt~RpGr~c~v--y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p---------------  242 (406)
T KOG2919|consen  180 CIRVFDTSRPGRDCPV--YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP---------------  242 (406)
T ss_pred             eEEEeeccCCCCCCcc--hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc---------------
Confidence            9999999654333210  00011112344778999999998888999999988888887666553               


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC-CCeEEEEECCCCCC-CcccccCCCCCCccccccccccccC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                                +....+|.+.|+.+.|.++ |+.|.+|+. |..|-.||++..+. +..+                    .
T Consensus       243 ----------l~llggh~gGvThL~~~ed-Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L--------------------~  291 (406)
T KOG2919|consen  243 ----------LQLLGGHGGGVTHLQWCED-GNKLFSGARKDDKILCWDIRYSRDPVYAL--------------------E  291 (406)
T ss_pred             ----------eeeecccCCCeeeEEeccC-cCeecccccCCCeEEEEeehhccchhhhh--------------------h
Confidence                      3334478889999999999 778888875 77899999997542 2222                    2


Q ss_pred             CCccc--cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC-cceeeecCCCCceeeeccCC
Q 004745          245 GRSSL--HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG-RAMRYTVGDASKIMSFTPTL  302 (732)
Q Consensus       245 ~~~~~--~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~  302 (732)
                      +|.+.  .-.-....|++++|++|+.||.|++||+++... +..+..+.+.++.++++|.+
T Consensus       292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m  352 (406)
T KOG2919|consen  292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM  352 (406)
T ss_pred             hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc
Confidence            22221  122356679999999999999999999999544 66666777788888888764

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3.7e-16  Score=144.07  Aligned_cols=249  Identities=14%  Similarity=0.180  Sum_probs=169.4

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      ++...+.|.+|..+|++++||+||++|+|+|.|..|.+||+..|.+++++  ....+|..+.|+|.. .+..+.+-.+..
T Consensus        54 T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--rf~spv~~~q~hp~k-~n~~va~~~~~s  130 (405)
T KOG1273|consen   54 TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--RFDSPVWGAQWHPRK-RNKCVATIMEES  130 (405)
T ss_pred             ccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--EccCccceeeecccc-CCeEEEEEecCC
Confidence            45577889999999999999999999999999999999999999999988  467899999999985 355555544555


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      -.+-++..+...++.      ...-........+..|.+ .++++++|...|.+.++|..+.+.....            
T Consensus       131 p~vi~~s~~~h~~Lp------~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~------------  191 (405)
T KOG1273|consen  131 PVVIDFSDPKHSVLP------KDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASF------------  191 (405)
T ss_pred             cEEEEecCCceeecc------CCCccccccccccccccC-CCCEEEEecCcceEEEEecchheeeeee------------
Confidence            555565542221110      000000011122235777 5599999999999999999887633100            


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                        +      +.    ....|..+-|+.. |++|+.-+.|..||.|+++.......-    ..+...+.+...      -.
T Consensus       192 --r------it----s~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~di~~~~r~----~e~e~~~K~qDv------VN  248 (405)
T KOG1273|consen  192 --R------IT----SVQAIKQIIVSRK-GRFLIINTSDRVIRTYEISDIDDEGRD----GEVEPEHKLQDV------VN  248 (405)
T ss_pred             --e------ec----hheeeeEEEEecc-CcEEEEecCCceEEEEehhhhcccCcc----CCcChhHHHHHH------Hh
Confidence              0      00    0236778888887 889999999999999998742211000    000111111000      01


Q ss_pred             cccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCcceeeecC-CCCceeeeccC
Q 004745          248 SLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVG-DASKIMSFTPT  301 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~  301 (732)
                      ..+-.+++|+.+|.|+++++. ...++||.-..|..+..+.+.. +....+.|+|.
T Consensus       249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~  304 (405)
T KOG1273|consen  249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV  304 (405)
T ss_pred             hhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence            114678999999999999987 4689999999988877777655 55556667764

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=6.3e-16  Score=154.33  Aligned_cols=185  Identities=14%  Similarity=0.118  Sum_probs=122.5

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  138 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  138 (732)
                      .+|++.|.+|...|.  |..|++|+.||+|+||.+.++          .|+.... ..+.|.+|+|+|.....++..+.+
T Consensus       397 rGHtg~Vr~iSvdp~--G~wlasGsdDGtvriWEi~Tg----------Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~  463 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPS--GEWLASGSDDGTVRIWEIATG----------RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG  463 (733)
T ss_pred             eccCCeEEEEEecCC--cceeeecCCCCcEEEEEeecc----------eEEEEEe-ecceeEEEEecCCCCceeEEEEec
Confidence            799999999999997  699999999999999999984          2355555 356899999999766656565655


Q ss_pred             CcEEEEECCCCCCCC------CCCCC----CcccceEEeeccCC--ccccccCCCCCccceEEEEecCCCCCEEEEEeCC
Q 004745          139 GTLRQHDFRQGSSCP------PAGSS----HQECRNILLDLRCG--AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD  206 (732)
Q Consensus       139 g~i~vwd~~~~~~~~------~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d  206 (732)
                      ..+.+-+..-+..+.      .....    ........|.-...  ....+.....|...|..+.|+.. |.+|++...+
T Consensus       464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV~~~  542 (733)
T KOG0650|consen  464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATVMPD  542 (733)
T ss_pred             CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEeccC
Confidence            667777655442220      00000    01111122221100  01112233346668999999998 7899887653


Q ss_pred             ---CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          207 ---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       207 ---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                         ..|.|.++...+...-+                    . ...+.|.++.|+|...+|++++.. .|+|||+..
T Consensus       543 ~~~~~VliHQLSK~~sQ~PF--------------------~-kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~k  596 (733)
T KOG0650|consen  543 SGNKSVLIHQLSKRKSQSPF--------------------R-KSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSK  596 (733)
T ss_pred             CCcceEEEEecccccccCch--------------------h-hcCCceeEEEecCCCceEEEEecc-ceEEEehhH
Confidence               56888888765322111                    1 112248999999999999998764 899999876

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=2.7e-15  Score=159.15  Aligned_cols=215  Identities=16%  Similarity=0.295  Sum_probs=147.4

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccC--CCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS   94 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~--h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~   94 (732)
                      +...+-..+.|+|-...++++...-.|+|||.+.++.+..|..+  ....|+.+.+..+.+..++++|+.||.|+||+--
T Consensus      1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            33445667889998888999887789999999999998887332  2467999999876556789999999999999754


Q ss_pred             CCC-CCCCCCCCCCCceeecc-------ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           95 RFS-GRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        95 ~~~-~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      ... ++.      +.+..+.+       -.+.=.-+.|....+.++ ++|.-..|+|||......+              
T Consensus      1142 ~~~~~~~------eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~~~-------------- 1200 (1387)
T KOG1517|consen 1142 ADKWKKP------ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQVV-------------- 1200 (1387)
T ss_pred             ccccCCc------eeEEeeccccccCccCCCCCeeeehhhhCCeEE-ecCCeeEEEEEecccceeE--------------
Confidence            321 111      11221111       111113456777665555 4555689999999876532              


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                      .++.          .+....+++++-+-.+|+.+++|..||.||+||.+...+-..          +..+       ..|
T Consensus      1201 ~diP----------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~----------v~~~-------R~h 1253 (1387)
T KOG1517|consen 1201 ADIP----------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL----------VCVY-------REH 1253 (1387)
T ss_pred             eecc----------cCCCccceeecccccCCceEEEeecCCceEEeecccCCcccc----------ceee-------ccc
Confidence            1221          123336777777666689999999999999999987543211          1111       112


Q ss_pred             cc-ccEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Q 004745          247 SS-LHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       247 ~~-~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~  279 (732)
                      .. .+|..+.+.+.|- .|++|+.+|.|++||++.
T Consensus      1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             CCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence            22 1388999998774 599999999999999998

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=6.5e-16  Score=144.34  Aligned_cols=240  Identities=15%  Similarity=0.161  Sum_probs=168.4

Q ss_pred             hccccEeeeccCCceeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeeEEEEc-cCCC-cCeEEEEEecCCCCCEEEEEE
Q 004745            8 RLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHS-ANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~~~~~~~~~-~~h~-~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      +++.++.+++|...++.++|..  .+..+.+++.||+|++||++......++. ..+. .+..|++..-.  ++.+++|.
T Consensus        59 tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck--~~ii~~Gt  136 (376)
T KOG1188|consen   59 TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK--KNIIACGT  136 (376)
T ss_pred             chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc--CCeEEecc
Confidence            3567888999999999999987  45688999999999999999876655553 2344 35556655434  46777775


Q ss_pred             C----CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004745           84 G----DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH  159 (732)
Q Consensus        84 ~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  159 (732)
                      .    +-.|.+||++..+..        ...-...|.+.|+++.|+|.++++|+|||-||.|.++|+.....-       
T Consensus       137 E~~~s~A~v~lwDvR~~qq~--------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee-------  201 (376)
T KOG1188|consen  137 ELTRSDASVVLWDVRSEQQL--------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE-------  201 (376)
T ss_pred             ccccCceEEEEEEeccccch--------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch-------
Confidence            3    567999999975421        123456799999999999999999999999999999999765311       


Q ss_pred             cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCC-----------
Q 004745          160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS-----------  228 (732)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-----------  228 (732)
                                     ..+...-.+...|.++.|..++-+.|.+-+...+..+|++..+.+...+..+..           
T Consensus       202 ---------------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~  266 (376)
T KOG1188|consen  202 ---------------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNC  266 (376)
T ss_pred             ---------------hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhh
Confidence                           111112234557999999988556788888899999999988775444332200           


Q ss_pred             -----------------CCCc-----c--------ccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          229 -----------------PPPC-----V--------NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       229 -----------------~~~~-----~--------~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                                       ...|     +        ..........+|++..-|.++.|...+..+++|+.||.+.+|...
T Consensus       267 dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  267 DYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             hheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence                             0000     0        000000011134333357888888889999999999999999864


Q ss_pred             C
Q 004745          279 H  279 (732)
Q Consensus       279 ~  279 (732)
                      .
T Consensus       347 d  347 (376)
T KOG1188|consen  347 D  347 (376)
T ss_pred             C
Confidence            4

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.69  E-value=8.8e-15  Score=157.87  Aligned_cols=235  Identities=17%  Similarity=0.155  Sum_probs=162.8

Q ss_pred             hhhhccccEeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-------eeEEEEccCCCcCeEEEEEecCCCC
Q 004745            5 LVRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSD   76 (732)
Q Consensus         5 ~~~~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~-------~~~~~~~~~h~~~V~~~~~s~~~~g   76 (732)
                      |..++..+..|..|...|..++.++.. .+++|||.||+|++||....       +...++ .....++.++.+.+.  +
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~--~ 1110 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGN--G 1110 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccC--C
Confidence            445677888899999999999998754 89999999999999997632       233334 335678999999998  5


Q ss_pred             CEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecccc-C-ceeEEEEecCCCc-EEEEEeCCCcEEEEECCCCCCCC
Q 004745           77 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT-R-RVKKLAVEVGNPH-VVWSASEDGTLRQHDFRQGSSCP  153 (732)
Q Consensus        77 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~-~v~~l~~~p~~~~-~l~s~s~dg~i~vwd~~~~~~~~  153 (732)
                      +.+|.++.||.|++.++.........   ..+......+. + .|..-+|...... .++.+..-+.|..||++..... 
T Consensus      1111 ~~~Av~t~DG~v~~~~id~~~~~~~~---~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~- 1186 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRV---ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA- 1186 (1431)
T ss_pred             CeEEEEcCCCeEEEEEccccccccce---eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-
Confidence            89999999999999999863221110   01111111121 2 2333344443333 7778888899999999887522 


Q ss_pred             CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcc
Q 004745          154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  233 (732)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  233 (732)
                                   |         ........+.|++++.+|. +.+++.|+..|.+.+||++-..++..+..        
T Consensus      1187 -------------w---------~lk~~~~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~sw~~-------- 1235 (1431)
T KOG1240|consen 1187 -------------W---------RLKNQLRHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILSWEH-------- 1235 (1431)
T ss_pred             -------------H---------hhhcCccccceeEEEecCC-ceEEEEecCCceEEEEEeecCceeecccC--------
Confidence                         1         1112223458999999998 78999999999999999998877666532        


Q ss_pred             ccccccccccCCCccccEEEEEEcCCC---CEEEEEec--CCeEEEEECCCCCCcceeeec
Q 004745          234 NYFCPMHLSEHGRSSLHLTHVTFSPNG---EEVLLSYS--GEHVYLMDVNHAGGRAMRYTV  289 (732)
Q Consensus       234 ~~~~~~~~~~~~~~~~~i~~l~~sp~g---~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~  289 (732)
                                 .+. .+|+.+..+|..   ...++++.  .+.|.+|++.++.....+...
T Consensus      1236 -----------P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1236 -----------PAR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred             -----------ccc-CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence                       122 257777777633   34555444  689999999998665555443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.68  E-value=1.9e-15  Score=138.04  Aligned_cols=205  Identities=15%  Similarity=0.241  Sum_probs=153.7

Q ss_pred             ccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004745           17 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL   93 (732)
Q Consensus        17 ~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~   93 (732)
                      .+..+++++.|+. |.++|.+++-|.+..|||++++..  +++-+-.|...|..++|...+ -+.+++++.||.||+||+
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDL  226 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEe
Confidence            3568999999997 778999999999999999998743  344336999999999999965 489999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC-cEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004745           94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                      +.....       ..+..-..-..+...++|++.+++++|+-..|. .|.+-|++.+..                     
T Consensus       227 R~leHS-------TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t---------------------  278 (364)
T KOG0290|consen  227 RSLEHS-------TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT---------------------  278 (364)
T ss_pred             cccccc-------eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc---------------------
Confidence            964321       111111122457788999999999999877665 588999988763                     


Q ss_pred             ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004745          173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  252 (732)
Q Consensus       173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (732)
                         .+..+.+|...|++++|.|..+..|++++.|..+-+||+.....-...       ..+..+       .  .+..|+
T Consensus       279 ---pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~-------dPilay-------~--a~~EVN  339 (364)
T KOG0290|consen  279 ---PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE-------DPILAY-------T--AGGEVN  339 (364)
T ss_pred             ---ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC-------Cchhhh-------h--ccceee
Confidence               355667788999999999998999999999999999999865320000       001111       1  122599


Q ss_pred             EEEEcC-CCCEEEEEecC
Q 004745          253 HVTFSP-NGEEVLLSYSG  269 (732)
Q Consensus       253 ~l~~sp-~g~~l~~~~~d  269 (732)
                      .+.|+| .+..++++...
T Consensus       340 qi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  340 QIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             eeeecccCCCEEEEEecC
Confidence            999996 55677766543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.68  E-value=7.7e-15  Score=136.07  Aligned_cols=229  Identities=15%  Similarity=0.187  Sum_probs=169.8

Q ss_pred             eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004745           15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF   91 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~---~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw   91 (732)
                      +.--..+|+|.+|++|++.+|.+-....|.||.....+   ..+++ ..|...|++++|+|..  +.|++|+.|..-+||
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap~s--nrIvtcs~drnayVw   82 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAPKS--NRIVTCSHDRNAYVW   82 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecCCC--CceeEccCCCCcccc
Confidence            33346899999999999999999999999999876554   56666 7899999999999995  899999999999999


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      .....  .     .+++...+..++...+++.|+| .++.||+|+.-..|.||-++..+.-              |-   
T Consensus        83 ~~~~~--~-----~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdW--------------WV---  137 (361)
T KOG1523|consen   83 TQPSG--G-----TWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDW--------------WV---  137 (361)
T ss_pred             ccCCC--C-----eeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccce--------------eh---
Confidence            88421  1     1456777888999999999999 5599999999999999988765421              00   


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccc-cc-cccCCCccc
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP-MH-LSEHGRSSL  249 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~  249 (732)
                          ...........|++++|+|+ +-+|++|+.|+.+|||..--.    ....+..+ ...-...| .. ..+....++
T Consensus       138 ----sKhikkPirStv~sldWhpn-nVLlaaGs~D~k~rVfSayIK----~Vdekpap-~pWgsk~PFG~lm~E~~~~gg  207 (361)
T KOG1523|consen  138 ----SKHIKKPIRSTVTSLDWHPN-NVLLAAGSTDGKCRVFSAYIK----GVDEKPAP-TPWGSKMPFGQLMSEASSSGG  207 (361)
T ss_pred             ----hhhhCCccccceeeeeccCC-cceecccccCcceeEEEEeee----ccccCCCC-CCCccCCcHHHHHHhhccCCC
Confidence                00111224558999999998 779999999999999975311    11111111 11110000 00 111213445


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      ++..+.|+|+|..|+-.+.|..|.+-|...+.
T Consensus       208 wvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  208 WVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            79999999999999999999999999988754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.67  E-value=7.9e-14  Score=143.71  Aligned_cols=195  Identities=14%  Similarity=0.157  Sum_probs=120.6

Q ss_pred             EEEEeCCCcEEEEeCCC-Ce--eEEEEccCCCcCeEEEEEecCCCCCEEEEEE-CCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004745           34 LISGSDDTHINVWSYSS-RK--LLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPS  109 (732)
Q Consensus        34 lasg~~dg~i~vWd~~~-~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~  109 (732)
                      +++...++.|++||+.+ ++  .+..+  .+.+....+.++|+  +++|+.++ .++.|.+|++.. ++..      ..+
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~-~g~l------~~~   73 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISPD--KRHLYVGVRPEFRVLSYRIAD-DGAL------TFA   73 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECCC--CCEEEEEECCCCcEEEEEECC-CCce------EEe
Confidence            34446789999999964 33  44444  24456788999999  47776654 588899999972 2211      111


Q ss_pred             eeeccccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceE
Q 004745          110 ALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK  188 (732)
Q Consensus       110 ~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  188 (732)
                      .... .......++++|++ +++++++ .++.|.+|++.+......                     .+.... ......
T Consensus        74 ~~~~-~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~---------------------~~~~~~-~~~~~~  129 (330)
T PRK11028         74 AESP-LPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVA---------------------PIQIIE-GLEGCH  129 (330)
T ss_pred             eeec-CCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCC---------------------ceeecc-CCCccc
Confidence            1111 23356789999966 5555554 588999999964321100                     000000 112456


Q ss_pred             EEEecCCCCCEE-EEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe
Q 004745          189 SCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY  267 (732)
Q Consensus       189 ~i~~~~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~  267 (732)
                      .++++|+ ++++ ++...++.|.+||+.+...+.....     ...          ....+.....++|+|+|++|+++.
T Consensus       130 ~~~~~p~-g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~-----~~~----------~~~~g~~p~~~~~~pdg~~lyv~~  193 (330)
T PRK11028        130 SANIDPD-NRTLWVPCLKEDRIRLFTLSDDGHLVAQEP-----AEV----------TTVEGAGPRHMVFHPNQQYAYCVN  193 (330)
T ss_pred             EeEeCCC-CCEEEEeeCCCCEEEEEEECCCCcccccCC-----Cce----------ecCCCCCCceEEECCCCCEEEEEe
Confidence            7889999 5555 5555679999999986432211000     000          000011356789999999998887


Q ss_pred             c-CCeEEEEECCC
Q 004745          268 S-GEHVYLMDVNH  279 (732)
Q Consensus       268 ~-dg~v~iwd~~~  279 (732)
                      . ++.|.+|++..
T Consensus       194 ~~~~~v~v~~~~~  206 (330)
T PRK11028        194 ELNSSVDVWQLKD  206 (330)
T ss_pred             cCCCEEEEEEEeC
Confidence            7 89999999975

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.67  E-value=2e-16  Score=163.44  Aligned_cols=119  Identities=21%  Similarity=0.376  Sum_probs=102.6

Q ss_pred             eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004745           53 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  132 (732)
Q Consensus        53 ~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  132 (732)
                      .+..+ .+|.++|+|+.|...  |.++++|+.|..++||...+.          .++....||.+.|+.++.+. +..++
T Consensus       182 ~ikrL-lgH~naVyca~fDrt--g~~Iitgsdd~lvKiwS~et~----------~~lAs~rGhs~ditdlavs~-~n~~i  247 (1113)
T KOG0644|consen  182 NIKRL-LGHRNAVYCAIFDRT--GRYIITGSDDRLVKIWSMETA----------RCLASCRGHSGDITDLAVSS-NNTMI  247 (1113)
T ss_pred             HHHHH-Hhhhhheeeeeeccc--cceEeecCccceeeeeeccch----------hhhccCCCCccccchhccch-hhhhh
Confidence            34444 589999999999998  699999999999999998763          34788999999999999988 44889


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004745          133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  212 (732)
Q Consensus       133 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw  212 (732)
                      ++++.|..|++|.+..+.                         ++....+|.+.|++++|+|- .    +.+.||++++|
T Consensus       248 aaaS~D~vIrvWrl~~~~-------------------------pvsvLrghtgavtaiafsP~-~----sss~dgt~~~w  297 (1113)
T KOG0644|consen  248 AAASNDKVIRVWRLPDGA-------------------------PVSVLRGHTGAVTAIAFSPR-A----SSSDDGTCRIW  297 (1113)
T ss_pred             hhcccCceEEEEecCCCc-------------------------hHHHHhccccceeeeccCcc-c----cCCCCCceEec
Confidence            999999999999999887                         34455678999999999996 2    67889999999


Q ss_pred             ECC
Q 004745          213 DRR  215 (732)
Q Consensus       213 d~~  215 (732)
                      |.+
T Consensus       298 d~r  300 (1113)
T KOG0644|consen  298 DAR  300 (1113)
T ss_pred             ccc
Confidence            998

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.66  E-value=1.9e-15  Score=152.41  Aligned_cols=229  Identities=15%  Similarity=0.208  Sum_probs=169.1

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      .+.++++|+||++.|+|++|+.||+++|+|+.|..|.||..+-.. +.+  ..|.+.|.|+.|.|-.  ..|+||+-+ .
T Consensus        42 dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~Lk--YSH~D~IQCMsFNP~~--h~LasCsLs-d  115 (1081)
T KOG1538|consen   42 DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILK--YSHNDAIQCMSFNPIT--HQLASCSLS-D  115 (1081)
T ss_pred             CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eee--eccCCeeeEeecCchH--HHhhhcchh-h
Confidence            456789999999999999999999999999999999999854322 223  4799999999999984  889998754 4


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      .-+|......           +...+ ....+.+.+|..+ +++++.|-.+|+|.+-+-...+..               
T Consensus       116 FglWS~~qK~-----------V~K~k-ss~R~~~CsWtnD-GqylalG~~nGTIsiRNk~gEek~---------------  167 (1081)
T KOG1538|consen  116 FGLWSPEQKS-----------VSKHK-SSSRIICCSWTND-GQYLALGMFNGTISIRNKNGEEKV---------------  167 (1081)
T ss_pred             ccccChhhhh-----------HHhhh-hheeEEEeeecCC-CcEEEEeccCceEEeecCCCCcce---------------
Confidence            6688776421           22222 3457888999985 599999999999998864333211               


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCC----CEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc-
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRP----HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS-  242 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~----~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  242 (732)
                              .+..+.+...+|.+++|+|..+    ..+++.....++.++.+.. +.+.+-..-.-.|.|+.++....+. 
T Consensus       168 --------~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~L  238 (1081)
T KOG1538|consen  168 --------KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYIL  238 (1081)
T ss_pred             --------EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEE
Confidence                    2333445666999999999743    4688888888898888763 3333332333345677766544321 


Q ss_pred             -------------------cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          243 -------------------EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       243 -------------------~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                                         ..|..+.+|+.++..|++++++.|+.||+|-.|++..
T Consensus       239 iGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  239 LGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence                               1234456899999999999999999999999999875

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.66  E-value=1.4e-15  Score=138.75  Aligned_cols=184  Identities=18%  Similarity=0.227  Sum_probs=144.4

Q ss_pred             cCCceeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004745           18 HQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR   95 (732)
Q Consensus        18 h~~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~   95 (732)
                      |....++-+|+|  ||+.+++.+ |+++..||+++.++...+...|...|..+.|.|+. ..+|++|+.||.|+|||.+.
T Consensus       169 ~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~  246 (370)
T KOG1007|consen  169 MRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRK  246 (370)
T ss_pred             ccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccC
Confidence            667788889998  888888775 68999999999999998888999999999999996 57899999999999999996


Q ss_pred             CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc-------eEEee
Q 004745           96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR-------NILLD  168 (732)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~  168 (732)
                      .+         .+++.+.+|...|.++.|+|...++|++++.|..|.+|....-.....+...+....       ...--
T Consensus       247 tk---------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kp  317 (370)
T KOG1007|consen  247 TK---------FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKP  317 (370)
T ss_pred             CC---------ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccc
Confidence            53         568999999999999999998889999999999999998765442211111111000       00001


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  215 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~  215 (732)
                      +..|   .+.....|...|++++|+.-++-.+|+-+.||.+.|=.+.
T Consensus       318 L~dg---~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  318 LQDG---QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cccc---ccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            1111   2335567889999999998878888999999999886654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.66  E-value=4.4e-15  Score=145.01  Aligned_cols=193  Identities=19%  Similarity=0.257  Sum_probs=156.2

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      ...+.|++|.+.|+++.++....+||+++..|.|.|-.+.++.....|..+....|.-+.|+|.. -.+|.+++.+|.|.
T Consensus       112 l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk-r~lL~~asd~G~Vt  190 (673)
T KOG4378|consen  112 LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK-RFLLSIASDKGAVT  190 (673)
T ss_pred             HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc-ceeeEeeccCCeEE
Confidence            35678999999999999999999999999999999999999988888844445667799999985 46788899999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  169 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  169 (732)
                      +||+....         ....-...|..+...|+|+|.++.+|++.+.|..|.+||++......          .+    
T Consensus       191 lwDv~g~s---------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----------~l----  247 (673)
T KOG4378|consen  191 LWDVQGMS---------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----------RL----  247 (673)
T ss_pred             EEeccCCC---------cccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----------ee----
Confidence            99998532         12345568999999999999999999999999999999998655220          00    


Q ss_pred             cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCCcc
Q 004745          170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                                  ....+...++|.++ |.+|++|...|.|..||++..+ ++..+                    ..|..
T Consensus       248 ------------~y~~Plstvaf~~~-G~~L~aG~s~G~~i~YD~R~~k~Pv~v~--------------------sah~~  294 (673)
T KOG4378|consen  248 ------------TYSHPLSTVAFSEC-GTYLCAGNSKGELIAYDMRSTKAPVAVR--------------------SAHDA  294 (673)
T ss_pred             ------------eecCCcceeeecCC-ceEEEeecCCceEEEEecccCCCCceEe--------------------eeccc
Confidence                        12237789999999 8999999999999999999754 22221                    44655


Q ss_pred             ccEEEEEEcCCC
Q 004745          249 LHLTHVTFSPNG  260 (732)
Q Consensus       249 ~~i~~l~~sp~g  260 (732)
                       .|++++|-|..
T Consensus       295 -sVt~vafq~s~  305 (673)
T KOG4378|consen  295 -SVTRVAFQPSP  305 (673)
T ss_pred             -ceeEEEeeecc
Confidence             49999998875

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=1.7e-14  Score=151.30  Aligned_cols=212  Identities=13%  Similarity=0.130  Sum_probs=148.1

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEe-CC--CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWS-YS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL   93 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd-~~--~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~   93 (732)
                      .|...++|.++||+++++|+|..||.|.||. ..  ......++.+=|-..|++++|+++  |.+|+||+..+.+.+|.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~--G~~LlSGG~E~VLv~Wq~  280 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD--GAYLLSGGREGVLVLWQL  280 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC--CceEeecccceEEEEEee
Confidence            4777899999999999999999999999995 33  222333333568889999999999  699999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745           94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                      .+++.           +-+..-..+|..+.++|++ .+.+....|..|.+-...+......+........          
T Consensus       281 ~T~~k-----------qfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~----------  338 (792)
T KOG1963|consen  281 ETGKK-----------QFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP----------  338 (792)
T ss_pred             cCCCc-----------ccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCc----------
Confidence            98652           3344457899999999965 7777778899999998766543211100000000          


Q ss_pred             cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004745          174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  253 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (732)
                          ........-.+.++++|- .+.++-.+..|.|.+||+-+...+.++...      ...+...    .+.....++.
T Consensus       339 ----~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~~~~v~------~~n~~~~----~~n~~v~ita  403 (792)
T KOG1963|consen  339 ----STKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIYKLQVC------DENYSDG----DVNIQVGITA  403 (792)
T ss_pred             ----cccccccccceeEEEcCC-CCceeecCCCceEEEEeccccceeeeEEEE------eecccCC----cceeEEeeee
Confidence                001122335577888885 667888899999999999988777655321      1111111    1011224888


Q ss_pred             EEEcCCCCEEEEEe
Q 004745          254 VTFSPNGEEVLLSY  267 (732)
Q Consensus       254 l~~sp~g~~l~~~~  267 (732)
                      ++.+..|.++++.-
T Consensus       404 v~~~~~gs~maT~E  417 (792)
T KOG1963|consen  404 VARSRFGSWMATLE  417 (792)
T ss_pred             ehhhccceEEEEee
Confidence            88888898888763

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=2.6e-15  Score=144.70  Aligned_cols=202  Identities=21%  Similarity=0.270  Sum_probs=149.5

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCC
Q 004745           23 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  102 (732)
Q Consensus        23 ~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~  102 (732)
                      .+++|+++|..|++|+.||++|||++.....+... ..|...|.++.|+|+  |++|++-+.| ..+||+++++..    
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~----  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAA----  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCch----
Confidence            78999999999999999999999998888888777 689999999999999  5999999999 899999997521    


Q ss_pred             CCCCCCceee--ccccCceeEEEEecCC---C-cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004745          103 DNAITPSALY--QCHTRRVKKLAVEVGN---P-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  176 (732)
Q Consensus       103 ~~~~~~~~~~--~~h~~~v~~l~~~p~~---~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (732)
                            +...  ..-......+.|..++   . .+++.-..-+.|+.||+.....-                    ....
T Consensus       220 ------~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--------------------~~l~  273 (398)
T KOG0771|consen  220 ------LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--------------------NFLR  273 (398)
T ss_pred             ------hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--------------------cccc
Confidence                  1111  2223345566776643   1 22333344567888777554311                    0001


Q ss_pred             ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004745          177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  256 (732)
Q Consensus       177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  256 (732)
                      ..........|++++.+++ |++++.|+.||.|.|++..+.+.+.-.             .      +.|.. .|+.+.|
T Consensus       274 ~~~~~~~~~siSsl~VS~d-Gkf~AlGT~dGsVai~~~~~lq~~~~v-------------k------~aH~~-~VT~ltF  332 (398)
T KOG0771|consen  274 LRKKIKRFKSISSLAVSDD-GKFLALGTMDGSVAIYDAKSLQRLQYV-------------K------EAHLG-FVTGLTF  332 (398)
T ss_pred             hhhhhhccCcceeEEEcCC-CcEEEEeccCCcEEEEEeceeeeeEee-------------h------hhhee-eeeeEEE
Confidence            1111122337999999999 899999999999999999877543322             1      44555 5999999


Q ss_pred             cCCCCEEEEEecCCeEEEEECCC
Q 004745          257 SPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       257 sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +|+.++++.-+.+....+..+.-
T Consensus       333 ~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  333 SPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cCCcCcccccccCCceeEEEEee
Confidence            99999999999999999887765

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.65  E-value=1.8e-14  Score=151.26  Aligned_cols=265  Identities=13%  Similarity=0.130  Sum_probs=179.8

Q ss_pred             cccEeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCee-----EEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745           10 SQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~-----~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      .+...+. -..+|+|+.|+| +..+||.|..+|.|.+||+..+..     +......|..+|+.+.|..+..+.-+++++
T Consensus       234 ~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s  312 (555)
T KOG1587|consen  234 TPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS  312 (555)
T ss_pred             CceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe
Confidence            3444443 468999999999 567888899999999999987655     222234799999999999875345699999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeec------cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  157 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  157 (732)
                      .||.|+.|+++.......    ..+.....      .-...+++++|.+.+++.|+.|+++|.|..=+-........   
T Consensus       313 sDG~i~~W~~~~l~~P~e----~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~---  385 (555)
T KOG1587|consen  313 SDGSICSWDTDMLSLPVE----GLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE---  385 (555)
T ss_pred             cCCcEeeeeccccccchh----hcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc---
Confidence            999999999885432111    00011111      22356899999999999999999999987633333221100   


Q ss_pred             CCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC-CCCCCcccccCCCCCCccccc
Q 004745          158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYF  236 (732)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~  236 (732)
                             .+       ...+..+..|.+.|+++.++|-....+.+++ |.+|+||... ...++..+             
T Consensus       386 -------~~-------~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~-------------  437 (555)
T KOG1587|consen  386 -------VS-------YKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSL-------------  437 (555)
T ss_pred             -------cc-------ccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhh-------------
Confidence                   00       1123344567789999999999666666666 9999999887 54444333             


Q ss_pred             cccccccCCCccccEEEEEEcCCCC-EEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccC
Q 004745          237 CPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFL  315 (732)
Q Consensus       237 ~~~~~~~~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (732)
                             ..+.. .+++++|||... .++++..||.|.|||+...........              +-.......+.++
T Consensus       438 -------~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~--------------~~~~~~l~~~~~s  495 (555)
T KOG1587|consen  438 -------DSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ--------------KVCSPALTRVRWS  495 (555)
T ss_pred             -------hhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc--------------cccccccceeecC
Confidence                   11222 499999999765 556666699999999987432221111              0112344556777


Q ss_pred             CCccccccccccCcchhhHH
Q 004745          316 QTNIRVRGEVATGLGKCRML  335 (732)
Q Consensus       316 ~~g~~~~~~~~~~~d~~~~l  335 (732)
                      ++|+.++   .+...|.+.+
T Consensus       496 ~~g~~la---vGd~~G~~~~  512 (555)
T KOG1587|consen  496 PNGKLLA---VGDANGTTHI  512 (555)
T ss_pred             CCCcEEE---EecCCCcEEE
Confidence            8899999   8888887776

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.64  E-value=1.6e-13  Score=144.25  Aligned_cols=206  Identities=18%  Similarity=0.162  Sum_probs=136.4

Q ss_pred             CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCcee
Q 004745           41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK  120 (732)
Q Consensus        41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~  120 (732)
                      +.+.||++......... ......|+|+.|+|.. ..+++.|..+|.|.+||++.......    ...-.....|..+++
T Consensus       222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~-p~ll~gG~y~GqV~lWD~~~~~~~~~----s~ls~~~~sh~~~v~  295 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPFD-PNLLAGGCYNGQVVLWDLRKGSDTPP----SGLSALEVSHSEPVT  295 (555)
T ss_pred             ceEEEEecCCCCCceEE-EecCCceeEEEeccCC-cceEEeeccCceEEEEEccCCCCCCC----cccccccccCCcCeE
Confidence            47999999877333333 2567889999999986 68999999999999999997544211    111223446899999


Q ss_pred             EEEEecCCC-cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCE
Q 004745          121 KLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL  199 (732)
Q Consensus       121 ~l~~~p~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  199 (732)
                      .+.|..+.. .-|++++.||.|..|+++.-..+..........             ...........+++++|.+.+.+.
T Consensus       296 ~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~-------------~~~~~~~~~~~~t~~~F~~~~p~~  362 (555)
T KOG1587|consen  296 AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK-------------HKGQQSSKAVGATSLKFEPTDPNH  362 (555)
T ss_pred             EEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc-------------ccccccccccceeeEeeccCCCce
Confidence            999976332 347799999999999887665432111111000             001111234478999999988999


Q ss_pred             EEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          200 LLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       200 l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                      +++|+.+|.|.--+....+.-..           ..+.+ +.....|.+ +|+++.++|-+..++..+.|.+|+||...
T Consensus       363 FiVGTe~G~v~~~~r~g~~~~~~-----------~~~~~-~~~~~~h~g-~v~~v~~nPF~~k~fls~gDW~vriWs~~  428 (555)
T KOG1587|consen  363 FIVGTEEGKVYKGCRKGYTPAPE-----------VSYKG-HSTFITHIG-PVYAVSRNPFYPKNFLSVGDWTVRIWSED  428 (555)
T ss_pred             EEEEcCCcEEEEEeccCCccccc-----------ccccc-cccccccCc-ceEeeecCCCccceeeeeccceeEecccc
Confidence            99999999998744433321110           00101 101123434 69999999988777777779999999765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.64  E-value=2.2e-13  Score=146.45  Aligned_cols=163  Identities=26%  Similarity=0.419  Sum_probs=119.2

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecccc-CceeEEEE-ecCCCcEEEEEe
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT-RRVKKLAV-EVGNPHVVWSAS  136 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~p~~~~~l~s~s  136 (732)
                      ..|...+.++.|.+.  +..++.++.|+.+.+|+.....         ..+..+.++. ..+..+.+ .++....++..+
T Consensus        62 ~~~~~~i~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (466)
T COG2319          62 RGHEDSITSIAFSPD--GELLLSGSSDGTIKLWDLDNGE---------KLIKSLEGLHDSSVSKLALSSPDGNSILLASS  130 (466)
T ss_pred             eeccceEEEEEECCC--CcEEEEecCCCcEEEEEcCCCc---------eeEEEEeccCCCceeeEEEECCCcceEEeccC
Confidence            578999999999998  4888888899999999998642         1245555533 36777777 675543555544


Q ss_pred             C-CCcEEEEECCC-CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC-CCeEEEEE
Q 004745          137 E-DGTLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYD  213 (732)
Q Consensus       137 ~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-dg~v~iwd  213 (732)
                      . |+.+.+|+... ..                         .......|...|..++|+|+ +..+++++. |+.+++|+
T Consensus       131 ~~d~~~~~~~~~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~  184 (466)
T COG2319         131 SLDGTVKLWDLSTPGK-------------------------LIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWD  184 (466)
T ss_pred             CCCccEEEEEecCCCe-------------------------EEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEE
Confidence            5 99999999987 22                         11222345668889999999 668888875 99999999


Q ss_pred             CCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Q 004745          214 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~  279 (732)
                      +.....+..+                    .+|.. .|.+++|+|++. .+++++.|+.|++||...
T Consensus       185 ~~~~~~~~~~--------------------~~~~~-~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~  230 (466)
T COG2319         185 LRTGKPLSTL--------------------AGHTD-PVSSLAFSPDGGLLIASGSSDGTIRLWDLST  230 (466)
T ss_pred             cCCCceEEee--------------------ccCCC-ceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence            9975443332                    33444 599999999998 455558899999997664

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.62  E-value=3.1e-15  Score=147.41  Aligned_cols=196  Identities=16%  Similarity=0.310  Sum_probs=149.7

Q ss_pred             hhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      .+..++.+....|.+.|.|-.|+|||.-|+|++.||.|++|. ++|-...++ .....+|.|++|.|++ .+.+++.+  
T Consensus        91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl-~Q~~~~v~c~~W~p~S-~~vl~c~g--  165 (737)
T KOG1524|consen   91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTV-VQNEESIRCARWAPNS-NSIVFCQG--  165 (737)
T ss_pred             cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHH-hhcCceeEEEEECCCC-CceEEecC--
Confidence            455667778889999999999999999999999999999998 455444444 4567889999999997 34555433  


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      +.+.|=-+...          ..+-..+.|.+-|.++.|+|.. +++++|++|-..++||-...                
T Consensus       166 ~h~~IKpL~~n----------~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~----------------  218 (737)
T KOG1524|consen  166 GHISIKPLAAN----------SKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGA----------------  218 (737)
T ss_pred             CeEEEeecccc----------cceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCc----------------
Confidence            45555555432          1256788999999999999955 99999999999999997543                


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  245 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (732)
                                .+.....|..+|++++|+|+  ..++.++. +++|+=.++.                             
T Consensus       219 ----------~Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R~~~p~~-----------------------------  256 (737)
T KOG1524|consen  219 ----------NLFTSAAEEYAITSVAFNPE--KDYLLWSY-NTARFSSPRV-----------------------------  256 (737)
T ss_pred             ----------ccccCChhccceeeeeeccc--cceeeeee-eeeeecCCCc-----------------------------
Confidence                      24445568889999999998  46666664 4566322221                             


Q ss_pred             CccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                        + .|..++||+||..+++|+..|.|.+--+-
T Consensus       257 --G-SifnlsWS~DGTQ~a~gt~~G~v~~A~~i  286 (737)
T KOG1524|consen  257 --G-SIFNLSWSADGTQATCGTSTGQLIVAYAI  286 (737)
T ss_pred             --c-ceEEEEEcCCCceeeccccCceEEEeeee
Confidence              1 59999999999999999999987665443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=6.5e-14  Score=135.15  Aligned_cols=84  Identities=13%  Similarity=0.228  Sum_probs=69.3

Q ss_pred             cceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEe-cCcccEEEEeecCCCCeEEEecCCCcE
Q 004745          584 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLL-GDEAVVNCVQCHPFDCVVATSGIDNTI  662 (732)
Q Consensus       584 ~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~-gH~~~V~~v~fsp~~~~l~S~s~D~~i  662 (732)
                      ..+....+ +.++++.    .|+||+|+|-|+.||.|-|++..+-++++..+ +|..-||+|.|+||.+++++.+.|.++
T Consensus       274 ~~~~~~~~-~siSsl~----VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~  348 (398)
T KOG0771|consen  274 LRKKIKRF-KSISSLA----VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEA  348 (398)
T ss_pred             hhhhhhcc-CcceeEE----EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCce
Confidence            33333334 2445555    69999999999999999999999999887664 699999999999999999999999999


Q ss_pred             EEEcCCCCCC
Q 004745          663 KIWTPSASVP  672 (732)
Q Consensus       663 ~vW~~~~~~~  672 (732)
                      .|-.+.-...
T Consensus       349 ~v~~l~vd~~  358 (398)
T KOG0771|consen  349 AVTKLAVDKT  358 (398)
T ss_pred             eEEEEeeccc
Confidence            9988876443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.61  E-value=7e-14  Score=151.06  Aligned_cols=193  Identities=18%  Similarity=0.260  Sum_probs=131.8

Q ss_pred             EeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe
Q 004745           46 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE  125 (732)
Q Consensus        46 Wd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  125 (732)
                      |++ .|..+..+ ..|...|..++.++.. +.+++||+.||+|++|+++...+..   .......++......+.++.+.
T Consensus      1034 W~p-~G~lVAhL-~Ehs~~v~k~a~s~~~-~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNP-RGILVAHL-HEHSSAVIKLAVSSEH-TSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred             CCc-cceEeehh-hhccccccceeecCCC-CceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEec
Confidence            553 46777777 7899999999998875 5899999999999999998644431   0112223333346788899998


Q ss_pred             cCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCC-EEEEEe
Q 004745          126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGG  204 (732)
Q Consensus       126 p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~tg~  204 (732)
                      + +++.+|.++.||.|++.++.........      +          ..............|..-+|...... .++.+.
T Consensus      1108 ~-~~~~~Av~t~DG~v~~~~id~~~~~~~~------~----------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHYNVSKRV------A----------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred             c-CCCeEEEEcCCCeEEEEEccccccccce------e----------eeeecccccCCCceEEeecccccccceeEEEEE
Confidence            8 5588999999999999998774211000      0          00001111111113333344433334 788888


Q ss_pred             CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          205 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       205 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      ..+.|..||+++...+..++..                 . .++ .|++++.+|.+.++++|+..|.+-+||++=.
T Consensus      1171 ~~~~iv~~D~r~~~~~w~lk~~-----------------~-~hG-~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQ-----------------L-RHG-LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred             eccceEEecchhhhhHHhhhcC-----------------c-ccc-ceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence            8999999999987654433211                 1 222 5999999999999999999999999999863

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.60  E-value=1.7e-14  Score=133.92  Aligned_cols=227  Identities=10%  Similarity=0.091  Sum_probs=152.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCC
Q 004745           24 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  103 (732)
Q Consensus        24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~  103 (732)
                      -++|||+|+++|+.+.- .+.|-|..+.+..+.+  ..-..|..+.|..++ -..|.....|+.|.+|++..+.-     
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf--~cldki~yieW~ads-~~ilC~~yk~~~vqvwsl~Qpew-----   83 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF--LCLDKIVYIEWKADS-CHILCVAYKDPKVQVWSLVQPEW-----   83 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH--HHHHHhhheeeeccc-eeeeeeeeccceEEEEEeeccee-----
Confidence            46799999999999764 7888898887766555  234568889999885 24455557789999999986432     


Q ss_pred             CCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC
Q 004745          104 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ  183 (732)
Q Consensus       104 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (732)
                           ...+......+.++.|+|++.+++.+..-+-.|.+|.+.+.+..                        ....+++
T Consensus        84 -----~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~------------------------~~~~pK~  134 (447)
T KOG4497|consen   84 -----YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY------------------------LLPHPKT  134 (447)
T ss_pred             -----EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE------------------------Eeccccc
Confidence                 34566677889999999988788888899999999999886521                        1112222


Q ss_pred             ccceEEEEecCCCCCEEEEEeCCCe---EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC
Q 004745          184 TLSLKSCDISSTRPHLLLVGGSDAF---ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  260 (732)
Q Consensus       184 ~~~v~~i~~~~~~~~~l~tg~~dg~---v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g  260 (732)
                        .+..++|+|+ |++.+..+.-..   +.|..-.....+..+                    .-... ..+.+.|+|||
T Consensus       135 --~~kg~~f~~d-g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f--------------------~~dT~-DltgieWsPdg  190 (447)
T KOG4497|consen  135 --NVKGYAFHPD-GQFCAILSRRDCKDYVQISSCKAWILLKEF--------------------KLDTI-DLTGIEWSPDG  190 (447)
T ss_pred             --CceeEEECCC-CceeeeeecccHHHHHHHHhhHHHHHHHhc--------------------CCCcc-cccCceECCCC
Confidence              4578999999 778877765311   111111111111111                    00111 36789999999


Q ss_pred             CEEEEEec--CCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHH
Q 004745          261 EEVLLSYS--GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEI  338 (732)
Q Consensus       261 ~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~  338 (732)
                      ..|++-..  +-.|+.|.-..                            .+..++++|-++.++   .++.|+..++...
T Consensus       191 ~~laVwd~~Leykv~aYe~~l----------------------------G~k~v~wsP~~qfla---vGsyD~~lrvlnh  239 (447)
T KOG4497|consen  191 NWLAVWDNVLEYKVYAYERGL----------------------------GLKFVEWSPCNQFLA---VGSYDQMLRVLNH  239 (447)
T ss_pred             cEEEEecchhhheeeeeeecc----------------------------ceeEEEeccccceEE---eeccchhhhhhce
Confidence            97776433  33444443322                            345567888889999   9999999998655


Q ss_pred             HHhhh
Q 004745          339 ARNSL  343 (732)
Q Consensus       339 ~~~~~  343 (732)
                      ..|..
T Consensus       240 ~tWk~  244 (447)
T KOG4497|consen  240 FTWKP  244 (447)
T ss_pred             eeeee
Confidence            55543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.60  E-value=3.7e-14  Score=135.70  Aligned_cols=128  Identities=23%  Similarity=0.373  Sum_probs=105.5

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC--------C-----C--eeEEEEccCCCcCeEEEEEecC
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--------S-----R--KLLHSIETGHSANVFCTKFVPE   73 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~--------~-----~--~~~~~~~~~h~~~V~~~~~s~~   73 (732)
                      .+....|..|...|+++.|+|+|.+||+|+.+|.|.+|...        +     .  -.+.....+|...|..++|+|+
T Consensus        55 V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d  134 (434)
T KOG1009|consen   55 VEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD  134 (434)
T ss_pred             EEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence            34556788999999999999999999999999999999765        2     1  1233334789999999999999


Q ss_pred             CCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004745           74 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  149 (732)
Q Consensus        74 ~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~  149 (732)
                        +.++++++-|..+++||+..+..          ...+.+|...+..++|.|-+ +++++-+.|...+.+.+...
T Consensus       135 --~~~l~s~s~dns~~l~Dv~~G~l----------~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~  197 (434)
T KOG1009|consen  135 --SNFLVSGSVDNSVRLWDVHAGQL----------LAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLK  197 (434)
T ss_pred             --CceeeeeeccceEEEEEecccee----------Eeeccccccccceeecchhh-hhhhhhccCcccceeeeeee
Confidence              49999999999999999997532          67788899999999999954 88888888876666665443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=2.4e-13  Score=144.46  Aligned_cols=225  Identities=12%  Similarity=0.083  Sum_probs=143.5

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEE-ECCCc
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-AGDAE   87 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~-~~dg~   87 (732)
                      .+.+..|...+...+|+|||++|+.++.+   ..|++||+.+++.....  ...+....++|+|+  |+.|+.+ +.+|.
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPD--G~~La~~~~~~g~  271 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPD--GSRLAFASSKDGV  271 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe--cCCCccCceeECCC--CCEEEEEEecCCc
Confidence            45677888899999999999999987653   46999999887543221  12223457899999  4777765 46887


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      +.||.+....+.         ...+..+...+....|+|++..+++++..++...+|++......               
T Consensus       272 ~~Iy~~d~~~~~---------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---------------  327 (429)
T PRK01742        272 LNIYVMGANGGT---------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---------------  327 (429)
T ss_pred             EEEEEEECCCCC---------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---------------
Confidence            776644321121         34455566778899999976444555556788888887543211               


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                            ...+ .   +..  ....|+|+ ++.|+..+.++ +.+||+.+++.....                    ... 
T Consensus       328 ------~~~l-~---~~~--~~~~~SpD-G~~ia~~~~~~-i~~~Dl~~g~~~~lt--------------------~~~-  372 (429)
T PRK01742        328 ------ASLV-G---GRG--YSAQISAD-GKTLVMINGDN-VVKQDLTSGSTEVLS--------------------STF-  372 (429)
T ss_pred             ------eEEe-c---CCC--CCccCCCC-CCEEEEEcCCC-EEEEECCCCCeEEec--------------------CCC-
Confidence                  0001 0   111  34679999 77888777765 556999876421100                    001 


Q ss_pred             cccEEEEEEcCCCCEEEEEecCCeEEEEECC--CCCCcceeeecCCCCceeeeccC
Q 004745          248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN--HAGGRAMRYTVGDASKIMSFTPT  301 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~  301 (732)
                        ...++.|+|+|++|+.++.++.+.+|.+.  +++....+..+.......+|+|.
T Consensus       373 --~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        373 --LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             --CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence              12357899999999999999988888764  33433333333444445555553

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=2.9e-13  Score=120.73  Aligned_cols=216  Identities=15%  Similarity=0.165  Sum_probs=146.5

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEeCCC---------Ce-eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           20 GCVNAISWNSKGSLLISGSDDTHINVWSYSS---------RK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~---------~~-~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      ..|.+-+|+|.+++|+.|..+|+|.+..+..         ++ .+..+ ++|+++|+.++|..    .+|++|+ ||.|+
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~e-qahdgpiy~~~f~d----~~Lls~g-dG~V~   84 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPE-QAHDGPIYYLAFHD----DFLLSGG-DGLVY   84 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeec-cccCCCeeeeeeeh----hheeecc-CceEE
Confidence            4566778999999999999999999998753         22 33333 79999999999994    4777776 59999


Q ss_pred             EEEcCCCCCC--CCCC-CCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           90 LFNLSRFSGR--GLDD-NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        90 vwd~~~~~~~--~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      -|..+.....  +... ....|.+.-.-.--.|+++...|..+. ++.++.|+.++.||+++++                
T Consensus        85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~----------------  147 (325)
T KOG0649|consen   85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGR----------------  147 (325)
T ss_pred             EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCE----------------
Confidence            9987643210  0000 000111110111235899999996644 4456689999999999987                


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                               ......+|...|.++.--.. ...+++|+.||++|+||.++.+.+..+.. ...+.|+          ..|
T Consensus       148 ---------i~r~~rGHtDYvH~vv~R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie~-yk~~~~l----------Rp~  206 (325)
T KOG0649|consen  148 ---------IQREYRGHTDYVHSVVGRNA-NGQILSGAEDGTVRVWDTKTQKHVSMIEP-YKNPNLL----------RPD  206 (325)
T ss_pred             ---------EEEEEcCCcceeeeeeeccc-CcceeecCCCccEEEEeccccceeEEecc-ccChhhc----------Ccc
Confidence                     22345678889999988443 34799999999999999999876655421 1111221          224


Q ss_pred             ccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Q 004745          247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  282 (732)
Q Consensus       247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~  282 (732)
                      -+.+|-+++.  +..+|++|+. ..+.+|+++..+.
T Consensus       207 ~g~wigala~--~edWlvCGgG-p~lslwhLrsse~  239 (325)
T KOG0649|consen  207 WGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSES  239 (325)
T ss_pred             cCceeEEEec--cCceEEecCC-CceeEEeccCCCc
Confidence            4446777765  4557777654 5899999998553

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=4.4e-13  Score=142.46  Aligned_cols=173  Identities=13%  Similarity=0.133  Sum_probs=108.9

Q ss_pred             CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCCCCCCCCCCCCceeecccc
Q 004745           40 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHT  116 (732)
Q Consensus        40 dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~  116 (732)
                      +..|.|||..... ...+ ..|...+....|+|+  |+.|+.++.+   ..|++||+.++...        .+..+.+| 
T Consensus       183 ~~~i~i~d~dg~~-~~~l-t~~~~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~~--------~l~~~~g~-  249 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIV-NRSSQPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGARK--------VVASFRGH-  249 (429)
T ss_pred             eEEEEEECCCCCC-ceEe-ccCCCccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCceE--------EEecCCCc-
Confidence            4689999986554 4445 578888999999999  5888877653   36999999864321        12333333 


Q ss_pred             CceeEEEEecCCCcEEEE-EeCCCcEEEE--ECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEec
Q 004745          117 RRVKKLAVEVGNPHVVWS-ASEDGTLRQH--DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  193 (732)
Q Consensus       117 ~~v~~l~~~p~~~~~l~s-~s~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  193 (732)
                        ...++|+|++ +.|+. .+.+|.+.||  |+.+++..                       .+   ..+...+....|+
T Consensus       250 --~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~~~-----------------------~l---t~~~~~~~~~~wS  300 (429)
T PRK01742        250 --NGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGTPS-----------------------QL---TSGAGNNTEPSWS  300 (429)
T ss_pred             --cCceeECCCC-CEEEEEEecCCcEEEEEEECCCCCeE-----------------------ee---ccCCCCcCCEEEC
Confidence              3468999966 55554 4578876665  55443310                       11   1123356788999


Q ss_pred             CCCCCEEE-EEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeE
Q 004745          194 STRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV  272 (732)
Q Consensus       194 ~~~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v  272 (732)
                      |+ ++.|+ ++..++..+||+++........                    .++..   ....|+|+|++|+..+.++ +
T Consensus       301 pD-G~~i~f~s~~~g~~~I~~~~~~~~~~~~--------------------l~~~~---~~~~~SpDG~~ia~~~~~~-i  355 (429)
T PRK01742        301 PD-GQSILFTSDRSGSPQVYRMSASGGGASL--------------------VGGRG---YSAQISADGKTLVMINGDN-V  355 (429)
T ss_pred             CC-CCEEEEEECCCCCceEEEEECCCCCeEE--------------------ecCCC---CCccCCCCCCEEEEEcCCC-E
Confidence            99 56555 4446788888887543211000                    01111   3467999999998887754 4


Q ss_pred             EEEECCC
Q 004745          273 YLMDVNH  279 (732)
Q Consensus       273 ~iwd~~~  279 (732)
                      .+||+.+
T Consensus       356 ~~~Dl~~  362 (429)
T PRK01742        356 VKQDLTS  362 (429)
T ss_pred             EEEECCC
Confidence            5577766

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1e-12  Score=124.80  Aligned_cols=258  Identities=12%  Similarity=0.078  Sum_probs=174.5

Q ss_pred             hhhhc-cccEeeecc-CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC---cCeEEEEEecCCCCCEE
Q 004745            5 LVRRL-SQERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS---ANVFCTKFVPETSDELV   79 (732)
Q Consensus         5 ~~~~~-~~~~~l~~h-~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~---~~V~~~~~s~~~~g~~l   79 (732)
                      +.++. +++.....| ...|.|++|....++|.+|+.+++|.+-|+++.+.+..+  .|.   +.|+.+..+|.  ++.|
T Consensus        89 ~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~--~~~~~~~~VY~m~~~P~--DN~~  164 (609)
T KOG4227|consen   89 MVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA--NENNNRGDVYHMDQHPT--DNTL  164 (609)
T ss_pred             HhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee--cccCcccceeecccCCC--CceE
Confidence            33343 677666544 489999999999999999999999999999999998887  444   48999999998  4899


Q ss_pred             EEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCC-
Q 004745           80 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS-  158 (732)
Q Consensus        80 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-  158 (732)
                      ++.+.++.|.+||.+......      . ...+.........+.|+|..+.+|++.+..+-+.+||++..........+ 
T Consensus       165 ~~~t~~~~V~~~D~Rd~~~~~------~-~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~  237 (609)
T KOG4227|consen  165 IVVTRAKLVSFIDNRDRQNPI------S-LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMF  237 (609)
T ss_pred             EEEecCceEEEEeccCCCCCC------c-eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcc
Confidence            999999999999998644221      1 22233345567889999999999999999999999999887643111100 


Q ss_pred             ---Cc----------------------ccceEEeeccCCccccccCCCC-----CccceEEEEecCCCCCEEEEEeCCCe
Q 004745          159 ---HQ----------------------ECRNILLDLRCGAKRSLADPPK-----QTLSLKSCDISSTRPHLLLVGGSDAF  208 (732)
Q Consensus       159 ---~~----------------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~tg~~dg~  208 (732)
                         ..                      ...-.++++.......+.....     ....+.+++|..+  +-+++|+.+-.
T Consensus       238 ~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~  315 (609)
T KOG4227|consen  238 KGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWG  315 (609)
T ss_pred             ccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccc
Confidence               00                      0001222332222222221111     1235667888765  46999999999


Q ss_pred             EEEEECCCCCCCcccccC------CCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          209 ARLYDRRMLPPLTSCQKR------MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       209 v~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      |++|.+.....-..+...      ++....+.   .......||.. -++.+.|+|...+|++++-...++||.-..
T Consensus       316 i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~---~~~~VLrGHRS-v~NQVRF~~H~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  316 IHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE---KELTVLRGHRS-VPNQVRFSQHNNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             eEEEecCCCccccCccccCcchhhCchhheec---ceeEEEecccc-cccceeecCCcceEeccchhhheecccccc
Confidence            999998654332222111      11100110   11112267777 489999999999999999999999996554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=3.9e-13  Score=143.08  Aligned_cols=212  Identities=16%  Similarity=0.259  Sum_probs=157.2

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCC
Q 004745           24 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  103 (732)
Q Consensus        24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~  103 (732)
                      -+.|.....+|.++|.-..|+|||....++++.+..+....|+++.-+... |+.|+.|..||.|++||.+.....    
T Consensus      1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~d---- 1244 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPD---- 1244 (1387)
T ss_pred             eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC-CceEEEeecCCceEEeecccCCcc----
Confidence            456776555566666678999999999999998877777888988877665 799999999999999999975443    


Q ss_pred             CCCCCceeeccccCc--eeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004745          104 NAITPSALYQCHTRR--VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  181 (732)
Q Consensus       104 ~~~~~~~~~~~h~~~--v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (732)
                         ..+...+.|++.  |..+.+.+.+-..|++|+.||.|++||++......            ..        .+..+-
T Consensus      1245 ---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~------------~~--------~iv~~~ 1301 (1387)
T KOG1517|consen 1245 ---SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET------------FL--------TIVAHW 1301 (1387)
T ss_pred             ---ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc------------cc--------eeeecc
Confidence               237788889888  99999999666679999999999999999853110            00        000001


Q ss_pred             CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC
Q 004745          182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  261 (732)
Q Consensus       182 ~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~  261 (732)
                      .....++++..+++ ...+|+|+. +.|+||++...+ +..+..          . +..   .+.....+.+++|||---
T Consensus      1302 ~yGs~lTal~VH~h-apiiAsGs~-q~ikIy~~~G~~-l~~~k~----------n-~~F---~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEH-APIIASGSA-QLIKIYSLSGEQ-LNIIKY----------N-PGF---MGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred             ccCccceeeeeccC-CCeeeecCc-ceEEEEecChhh-hccccc----------C-ccc---ccCcCCCcceeeecchhH
Confidence            11124889999998 678999887 999999987433 333211          0 111   223333589999999999


Q ss_pred             EEEEEecCCeEEEEECCCC
Q 004745          262 EVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       262 ~l~~~~~dg~v~iwd~~~~  280 (732)
                      +|++|+.|..|.||....+
T Consensus      1365 llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1365 LLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             hhhhccCCceEEEeecCCc
Confidence            9999999999999987764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=9.9e-12  Score=123.46  Aligned_cols=206  Identities=14%  Similarity=0.149  Sum_probs=131.9

Q ss_pred             ccccEe-eeccCCceeEEEEcC--CCCEEEEEeCCCcEEEEeCCC---------C-eeEEEEccCCCcCeEEEEEecCCC
Q 004745            9 LSQERE-LEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSS---------R-KLLHSIETGHSANVFCTKFVPETS   75 (732)
Q Consensus         9 ~~~~~~-l~~h~~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~---------~-~~~~~~~~~h~~~V~~~~~s~~~~   75 (732)
                      .|+++. -+||...|.++.|-|  +.+.++||..|..|+|+|+..         . .....+ ..|...|..++-.|+. 
T Consensus        82 ~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~-~cht~rVKria~~p~~-  159 (758)
T KOG1310|consen   82 YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCW-SCHTDRVKRIATAPNG-  159 (758)
T ss_pred             cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhh-hhhhhhhhheecCCCC-
Confidence            344444 468999999999999  457899999999999999984         2 223333 6799999999999986 


Q ss_pred             CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004745           76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  155 (732)
Q Consensus        76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  155 (732)
                      .+.+.++++||+|+-+|++.+............+..+...--...++..+|..+.+|+.|+.|-..++||.+...+....
T Consensus       160 PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s  239 (758)
T KOG1310|consen  160 PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRS  239 (758)
T ss_pred             CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCC
Confidence            48999999999999999996432111000001112222233567899999999999999999999999996554332111


Q ss_pred             CCCCcc-------cceEEeeccCCccccccC-CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCC
Q 004745          156 GSSHQE-------CRNILLDLRCGAKRSLAD-PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  220 (732)
Q Consensus       156 ~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~  220 (732)
                      ...+..       |...+.   .++...... .......++-+.|+|++. -|++.-..-.|+++|+...+..
T Consensus       240 ~~~~~~~pp~~~~cv~yf~---p~hlkn~~gn~~~~~~~~t~vtfnpNGt-ElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  240 DGTMNTCPPKDCRCVRYFS---PGHLKNSQGNLDRYITCCTYVTFNPNGT-ELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             CccccCCCCcccchhheec---CccccCcccccccceeeeEEEEECCCCc-EEEEeeCCeEEEEEeecCCCCc
Confidence            111111       111111   011000000 001111356788999954 4444444558999999987644

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.52  E-value=5.1e-12  Score=130.23  Aligned_cols=267  Identities=9%  Similarity=0.114  Sum_probs=160.4

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEe-CCCcEEEEeCC-CCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEE-
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYS-SRKL--LHSIETGHSANVFCTKFVPETSDELVVSGA-   83 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~-~dg~i~vWd~~-~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~-   83 (732)
                      ++.++.+. +.+....++++|++++|++++ .++.|.+|++. +++.  +...  ........+.|+|+  +++|++++ 
T Consensus        25 l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~~--g~~l~v~~~   99 (330)
T PRK11028         25 LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTDHQ--GRFLFSASY   99 (330)
T ss_pred             eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEECCC--CCEEEEEEc
Confidence            34555554 346678899999999887664 57899999986 3432  2222  23345678999999  47777766 


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      .++.|.+|++... +...     ..+..+. +......++++|++..++++...++.|.+||+.+...+....       
T Consensus       100 ~~~~v~v~~~~~~-g~~~-----~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-------  165 (330)
T PRK11028        100 NANCVSVSPLDKD-GIPV-----APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-------  165 (330)
T ss_pred             CCCeEEEEEECCC-CCCC-----Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-------
Confidence            4899999999742 1110     1122222 234467788999764555666677999999997633210000       


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC-CCeEEEEECCCCC-CCcccccCCCCCCcccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                                ........+  .....+.|+|+ +++++++.. ++.|.+||++... .+.....       +... +...
T Consensus       166 ----------~~~~~~~~g--~~p~~~~~~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~-------~~~~-p~~~  224 (330)
T PRK11028        166 ----------PAEVTTVEG--AGPRHMVFHPN-QQYAYCVNELNSSVDVWQLKDPHGEIECVQT-------LDMM-PADF  224 (330)
T ss_pred             ----------CCceecCCC--CCCceEEECCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEEEE-------EecC-CCcC
Confidence                      000000011  13467899999 677766665 8999999997421 1111100       0000 0000


Q ss_pred             ccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccc
Q 004745          242 SEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIR  320 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  320 (732)
                        .+  ......+.|+|+|++|+++.. ++.|.+|++..........         ...+..    ..+..+.++|||++
T Consensus       225 --~~--~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~---------~~~~~~----~~p~~~~~~~dg~~  287 (330)
T PRK11028        225 --SD--TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE---------GHQPTE----TQPRGFNIDHSGKY  287 (330)
T ss_pred             --CC--CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe---------EEEecc----ccCCceEECCCCCE
Confidence              01  112446899999999999865 7899999997643221111         111110    23456789999998


Q ss_pred             cccccccC-cchhhHH
Q 004745          321 VRGEVATG-LGKCRML  335 (732)
Q Consensus       321 ~~~~~~~~-~d~~~~l  335 (732)
                      +.   .+. .++++.+
T Consensus       288 l~---va~~~~~~v~v  300 (330)
T PRK11028        288 LI---AAGQKSHHISV  300 (330)
T ss_pred             EE---EEEccCCcEEE
Confidence            87   444 4777777

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=1.9e-12  Score=115.55  Aligned_cols=180  Identities=12%  Similarity=0.146  Sum_probs=126.0

Q ss_pred             cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEE
Q 004745           63 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR  142 (732)
Q Consensus        63 ~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  142 (732)
                      ..|..-+++|.  +++|+.|+.+|.|.+..+..............++...++|.++|+.++|+.   .+|++|+ ||.|+
T Consensus        11 ~tvf~qa~sp~--~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~   84 (325)
T KOG0649|consen   11 NTVFAQAISPS--KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVY   84 (325)
T ss_pred             HHHHHHhhCCc--ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEE
Confidence            34677789998  599999999999999998754322222222345667789999999999973   5677776 49999


Q ss_pred             EEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Q 004745          143 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  222 (732)
Q Consensus       143 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~  222 (732)
                      -|..+.....        ...+.+|......    .........|++|...|.. +-++.++.|+.++.||+.+++....
T Consensus        85 gw~W~E~~es--------~~~K~lwe~~~P~----~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~  151 (325)
T KOG0649|consen   85 GWEWNEEEES--------LATKRLWEVKIPM----QVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQRE  151 (325)
T ss_pred             Eeeehhhhhh--------ccchhhhhhcCcc----ccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEE
Confidence            9987765421        0111222221111    1101122378999999984 4555556899999999999875544


Q ss_pred             cccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Q 004745          223 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  282 (732)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~  282 (732)
                      +                    .||.+ .|.+++--.....+++|+.||++|+||.++++.
T Consensus       152 ~--------------------rGHtD-YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~  190 (325)
T KOG0649|consen  152 Y--------------------RGHTD-YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH  190 (325)
T ss_pred             E--------------------cCCcc-eeeeeeecccCcceeecCCCccEEEEeccccce
Confidence            4                    78888 599998855555699999999999999999653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.51  E-value=2.5e-13  Score=122.71  Aligned_cols=226  Identities=15%  Similarity=0.145  Sum_probs=154.1

Q ss_pred             hhccccEeee-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--------------eEEEEc-------------
Q 004745            7 RRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--------------LLHSIE-------------   58 (732)
Q Consensus         7 ~~~~~~~~l~-~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~--------------~~~~~~-------------   58 (732)
                      ++.+..-.++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++..+.              |...+.             
T Consensus        43 qt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp  121 (323)
T KOG0322|consen   43 QTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYP  121 (323)
T ss_pred             ecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecC
Confidence            3444455566 46788998888887 457788899999999986421              111100             


Q ss_pred             -------------------------cCCCcCeEEEEEecCCC-CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceee
Q 004745           59 -------------------------TGHSANVFCTKFVPETS-DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY  112 (732)
Q Consensus        59 -------------------------~~h~~~V~~~~~s~~~~-g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  112 (732)
                                               .+..+.+.|..+..... --+++.|-++|.+.+||+.+.....--....+.....
T Consensus       122 ~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~  201 (323)
T KOG0322|consen  122 SRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPN  201 (323)
T ss_pred             CcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccch
Confidence                                     12234566666443321 1256777889999999999752211111112334556


Q ss_pred             ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEe
Q 004745          113 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  192 (732)
Q Consensus       113 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  192 (732)
                      ..|..+|.++.+.+.. ..=++|+.+..+..|.+........                -+     .+..-....|..+..
T Consensus       202 ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq----------------~~-----~e~~lknpGv~gvrI  259 (323)
T KOG0322|consen  202 ASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQ----------------IR-----KEITLKNPGVSGVRI  259 (323)
T ss_pred             hhccCcceeeeechhh-cCCcCCCccccceeeeeccccCccc----------------cc-----ceEEecCCCccceEE
Confidence            6799999999998754 3334777888899999876531100                00     000011225677888


Q ss_pred             cCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeE
Q 004745          193 SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV  272 (732)
Q Consensus       193 ~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v  272 (732)
                      -|| ++.+|+++.|+.||||..++.+++..+                    .-|.. .|++++|+|+...+++++.|+.|
T Consensus       260 RpD-~KIlATAGWD~RiRVyswrtl~pLAVL--------------------kyHsa-gvn~vAfspd~~lmAaaskD~rI  317 (323)
T KOG0322|consen  260 RPD-GKILATAGWDHRIRVYSWRTLNPLAVL--------------------KYHSA-GVNAVAFSPDCELMAAASKDARI  317 (323)
T ss_pred             ccC-CcEEeecccCCcEEEEEeccCCchhhh--------------------hhhhc-ceeEEEeCCCCchhhhccCCceE
Confidence            898 889999999999999999999887765                    44665 59999999999999999999999


Q ss_pred             EEEEC
Q 004745          273 YLMDV  277 (732)
Q Consensus       273 ~iwd~  277 (732)
                      .+|++
T Consensus       318 SLWkL  322 (323)
T KOG0322|consen  318 SLWKL  322 (323)
T ss_pred             Eeeec
Confidence            99986

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.50  E-value=1.4e-11  Score=116.94  Aligned_cols=218  Identities=19%  Similarity=0.287  Sum_probs=147.1

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccC--CCcCeEEEEEecCCCCCEEEEEE--CCCcEEEEEcC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGA--GDAEVRLFNLS   94 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~--h~~~V~~~~~s~~~~g~~l~s~~--~dg~i~vwd~~   94 (732)
                      ..+|.++.++  .++|++.-.+ .|+|||+++++.++++..-  +...+.++++++.  +.+++-=+  ..|.|.|||+.
T Consensus        87 pt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~--n~ylAyp~s~t~GdV~l~d~~  161 (391)
T KOG2110|consen   87 PTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA--NCYLAYPGSTTSGDVVLFDTI  161 (391)
T ss_pred             CCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCC--CceEEecCCCCCceEEEEEcc
Confidence            3456666665  3467776654 4999999999999988543  4444555544444  45766432  36889999998


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc-EEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                      +.          .++..+..|.+.+-+++|+++| .+|||+++.|+ |||+.+.+++.              ++.++.|.
T Consensus       162 nl----------~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~k--------------l~eFRRG~  216 (391)
T KOG2110|consen  162 NL----------QPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQK--------------LYEFRRGT  216 (391)
T ss_pred             cc----------eeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccE--------------eeeeeCCc
Confidence            63          4478888999999999999954 99999999997 78999988873              33333332


Q ss_pred             cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCC---------------CCC-------
Q 004745          174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS---------------PPP-------  231 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~---------------~~~-------  231 (732)
                               ....|.+++|+|+ +.+|++.+..++|+||.+.... ......+..               .|.       
T Consensus       217 ---------~~~~IySL~Fs~d-s~~L~~sS~TeTVHiFKL~~~~-~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~  285 (391)
T KOG2110|consen  217 ---------YPVSIYSLSFSPD-SQFLAASSNTETVHIFKLEKVS-NNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLD  285 (391)
T ss_pred             ---------eeeEEEEEEECCC-CCeEEEecCCCeEEEEEecccc-cCCCCCCCCCCcccchhhhhhhhhcchhhhhhhh
Confidence                     1347899999999 7899999999999999987654 111110000               000       


Q ss_pred             ccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ..+.|...++...++.  .+..+.-.+...++.+++.||.++.|.+.-
T Consensus       286 ~~R~FAt~~l~~s~~~--~~~~l~~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  286 QSRKFATAKLPESGRK--NICSLSSIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             hccceeEEEccCCCcc--ceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence            0011212222222221  133343335778999999999999998875

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.49  E-value=3.8e-12  Score=120.81  Aligned_cols=195  Identities=12%  Similarity=0.167  Sum_probs=143.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCC--CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           21 CVNAISWNSKGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~~d--g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      .|--+-|+.  .++|..+.+  +.+++.+++.+..++.+  .....|.++.+..+    +|+.+-.+. |.|||++... 
T Consensus        48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~--~fpt~IL~VrmNr~----RLvV~Lee~-IyIydI~~Mk-  117 (391)
T KOG2110|consen   48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEI--FFPTSILAVRMNRK----RLVVCLEES-IYIYDIKDMK-  117 (391)
T ss_pred             EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEE--ecCCceEEEEEccc----eEEEEEccc-EEEEecccce-
Confidence            344555653  455555543  45899999999988887  35667999999875    566666554 9999999742 


Q ss_pred             CCCCCCCCCCceeec---cccCceeEEEEecCCCcEEEE-E-eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745           99 RGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWS-A-SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus        99 ~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s-~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                               +++++.   .+...+.++.+++.+ .+++- + ...|.|.+||+.+-+.                      
T Consensus       118 ---------lLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~----------------------  165 (391)
T KOG2110|consen  118 ---------LLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQP----------------------  165 (391)
T ss_pred             ---------eehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEccccee----------------------
Confidence                     344443   344455555555533 45553 2 2458899999887652                      


Q ss_pred             cccccCCCCCccceEEEEecCCCCCEEEEEeCCCe-EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004745          174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  252 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (732)
                         +.....|.+.+.+++|+++ |.+|||++..|+ |||+.+.+++.+..++                   .|-....|.
T Consensus       166 ---v~~I~aH~~~lAalafs~~-G~llATASeKGTVIRVf~v~~G~kl~eFR-------------------RG~~~~~Iy  222 (391)
T KOG2110|consen  166 ---VNTINAHKGPLAALAFSPD-GTLLATASEKGTVIRVFSVPEGQKLYEFR-------------------RGTYPVSIY  222 (391)
T ss_pred             ---eeEEEecCCceeEEEECCC-CCEEEEeccCceEEEEEEcCCccEeeeee-------------------CCceeeEEE
Confidence               3333468889999999999 899999999887 8999999998877764                   333334699


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          253 HVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      +++|+|++++|.+.+..++|+||.+...
T Consensus       223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  223 SLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             EEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            9999999999999999999999999873

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.48  E-value=1e-13  Score=134.84  Aligned_cols=200  Identities=16%  Similarity=0.186  Sum_probs=160.6

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      ..+-+.+.++.+|++|+.|+..|.|-.+|+.+++....+  .-...|.++.|..+.  ++++. .....+.|||-..   
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHne--q~~AV-AQK~y~yvYD~~G---  200 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHNE--QFFAV-AQKKYVYVYDNNG---  200 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhcch--HHHHh-hhhceEEEecCCC---
Confidence            445567899999999999999999999999999998888  345679999999883  55554 5678899998662   


Q ss_pred             CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004745           99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  178 (732)
Q Consensus        99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (732)
                              ..++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+.                         
T Consensus       201 --------tElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa-------------------------  245 (545)
T KOG1272|consen  201 --------TELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVA-------------------------  245 (545)
T ss_pred             --------cEEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhH-------------------------
Confidence                    225666654 568899999955 788899999999999999998431                         


Q ss_pred             CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004745          179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  258 (732)
Q Consensus       179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  258 (732)
                      ...-..+.+..|.-+|- ...+-+|..+|+|.+|...+.+++.++                    ..|.+ +|.++++.+
T Consensus       246 ~~~t~~G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~skePLvKi--------------------LcH~g-~V~siAv~~  303 (545)
T KOG1272|consen  246 SIRTGAGRTDVMKQNPY-NAVIHLGHSNGTVSLWSPNSKEPLVKI--------------------LCHRG-PVSSIAVDR  303 (545)
T ss_pred             HHHccCCccchhhcCCc-cceEEEcCCCceEEecCCCCcchHHHH--------------------HhcCC-CcceEEECC
Confidence            11223346677788887 458889999999999999998877665                    33555 699999999


Q ss_pred             CCCEEEEEecCCeEEEEECCCCCCc
Q 004745          259 NGEEVLLSYSGEHVYLMDVNHAGGR  283 (732)
Q Consensus       259 ~g~~l~~~~~dg~v~iwd~~~~~~~  283 (732)
                      +|+|+++++.|..++|||+++...+
T Consensus       304 ~G~YMaTtG~Dr~~kIWDlR~~~ql  328 (545)
T KOG1272|consen  304 GGRYMATTGLDRKVKIWDLRNFYQL  328 (545)
T ss_pred             CCcEEeecccccceeEeeecccccc
Confidence            9999999999999999999996533

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.48  E-value=4.3e-11  Score=122.83  Aligned_cols=198  Identities=15%  Similarity=0.118  Sum_probs=121.6

Q ss_pred             CEE-EEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce
Q 004745           32 SLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  110 (732)
Q Consensus        32 ~~l-asg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  110 (732)
                      +++ ++-..++.|.|.|..+.+.+.++. .....-..+.|+|+  |++++.++.||.|.++|+.+.+          .+.
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~-~~~~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~~----------~v~   72 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIP-TGGAPHAGLKFSPD--GRYLYVANRDGTVSVIDLATGK----------VVA   72 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE--STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSS----------EEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEc-CCCCceeEEEecCC--CCEEEEEcCCCeEEEEECCccc----------EEE
Confidence            344 455678999999999999999994 33333455789999  5899999999999999999743          255


Q ss_pred             eeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEE
Q 004745          111 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  190 (732)
Q Consensus       111 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  190 (732)
                      ..+. .....++++++++..+++++...+.+.++|.++.+..              ..+..+...    .......+.++
T Consensus        73 ~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v--------------~~I~~~~~~----~~~~~~Rv~aI  133 (369)
T PF02239_consen   73 TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV--------------KTIPTGGMP----VDGPESRVAAI  133 (369)
T ss_dssp             EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE--------------EEEE--EE-----TTTS---EEEE
T ss_pred             EEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccce--------------eeccccccc----ccccCCCceeE
Confidence            5553 4557889999976444445567899999999887632              111111000    00123366778


Q ss_pred             EecCCCCCEEEEEeC-CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe-c
Q 004745          191 DISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-S  268 (732)
Q Consensus       191 ~~~~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-~  268 (732)
                      ..+|. ...++..-. -+.|.+-|....+.+..-           ..         ..+.......|+|++++++++. .
T Consensus       134 v~s~~-~~~fVv~lkd~~~I~vVdy~d~~~~~~~-----------~i---------~~g~~~~D~~~dpdgry~~va~~~  192 (369)
T PF02239_consen  134 VASPG-RPEFVVNLKDTGEIWVVDYSDPKNLKVT-----------TI---------KVGRFPHDGGFDPDGRYFLVAANG  192 (369)
T ss_dssp             EE-SS-SSEEEEEETTTTEEEEEETTTSSCEEEE-----------EE---------E--TTEEEEEE-TTSSEEEEEEGG
T ss_pred             EecCC-CCEEEEEEccCCeEEEEEecccccccee-----------ee---------cccccccccccCcccceeeecccc
Confidence            78887 454555555 478888887765432110           00         1111467899999999887764 4


Q ss_pred             CCeEEEEECCCCCC
Q 004745          269 GEHVYLMDVNHAGG  282 (732)
Q Consensus       269 dg~v~iwd~~~~~~  282 (732)
                      ++.|-++|.++.+.
T Consensus       193 sn~i~viD~~~~k~  206 (369)
T PF02239_consen  193 SNKIAVIDTKTGKL  206 (369)
T ss_dssp             GTEEEEEETTTTEE
T ss_pred             cceeEEEeeccceE
Confidence            78999999988543

...

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=5.9e-12  Score=118.97  Aligned_cols=251  Identities=14%  Similarity=0.152  Sum_probs=161.2

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      +..+..++|++.-..+|++..|-.|++||-.. ++...+.......|+|++|-|.+ +..|+.|+..| |.+|.......
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls-aselavgCr~g-IciW~~s~tln  174 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS-ASELAVGCRAG-ICIWSDSRTLN  174 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC-cceeeeeecce-eEEEEcCcccc
Confidence            45788899999777889999999999999666 56556645567889999999997 67788777654 89998764211


Q ss_pred             CCC--C--CCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745           99 RGL--D--DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus        99 ~~~--~--~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                      ...  +  ......+....+| ..|+++.|.+++ ..+++++ .|..|+|||..++.....                   
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL-------------------  233 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPL-------------------  233 (445)
T ss_pred             cccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccc-------------------
Confidence            110  0  0001123334455 689999999976 6666665 467899999998874311                   


Q ss_pred             cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004745          174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  253 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (732)
                            .+...+.++-+.|+|| +.+|.++.-|+..++|......-....            .       - ..+ .|..
T Consensus       234 ------~~~glgg~slLkwSPd-gd~lfaAt~davfrlw~e~q~wt~erw------------~-------l-gsg-rvqt  285 (445)
T KOG2139|consen  234 ------IPKGLGGFSLLKWSPD-GDVLFAATCDAVFRLWQENQSWTKERW------------I-------L-GSG-RVQT  285 (445)
T ss_pred             ------cccCCCceeeEEEcCC-CCEEEEecccceeeeehhcccceecce------------e-------c-cCC-ceee
Confidence                  1223447788999999 789999999999999965432111000            0       1 112 5999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCcee--e------eccCCCCccCCCCCCccCCCccccc
Q 004745          254 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIM--S------FTPTLNGLELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       254 l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~g~~~~  322 (732)
                      ..|+|+|++|+.+.. |.-++|.+.-.++........+....+  +      .....+-.-.+..++++-|.|.+++
T Consensus       286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLa  361 (445)
T KOG2139|consen  286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLA  361 (445)
T ss_pred             eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEE
Confidence            999999998766654 344556655433333222211111110  0      0001112234567788899999988

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.45  E-value=1.5e-11  Score=114.59  Aligned_cols=218  Identities=11%  Similarity=0.136  Sum_probs=142.6

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcC--eEEEEEecCCCCCEE-EEEECC------CcEEEEE
Q 004745           22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN--VFCTKFVPETSDELV-VSGAGD------AEVRLFN   92 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~--V~~~~~s~~~~g~~l-~s~~~d------g~i~vwd   92 (732)
                      ...++|+.|...+++|..+| .+||+.+--+....- ..+.+.  +.-+-|--    ++| +.|+.+      ..|.|||
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-~~~~~G~~~veMLfR~----N~laLVGGg~~pky~pNkviIWD   81 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-QFIDGGFKIVEMLFRS----NYLALVGGGSRPKYPPNKVIIWD   81 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-ccccCchhhhhHhhhh----ceEEEecCCCCCCCCCceEEEEe
Confidence            44599999999999887766 899998754332222 122222  22232322    344 334333      4699999


Q ss_pred             cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCCC------------------
Q 004745           93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCP------------------  153 (732)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~-~~~~------------------  153 (732)
                      =..  .        .++..+. ...+|.++.+.+   ..|+..- .+.|.||...+. +.+.                  
T Consensus        82 D~k--~--------~~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~  146 (346)
T KOG2111|consen   82 DLK--E--------RCIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS  146 (346)
T ss_pred             ccc--C--------cEEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence            221  1        3355554 478899999987   3454544 468999988732 2210                  


Q ss_pred             ----CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCe-EEEEECCCCCCCcccccCCC
Q 004745          154 ----PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMS  228 (732)
Q Consensus       154 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~-v~iwd~~~~~~~~~~~~~~~  228 (732)
                          ..+++.......+.++.......-.....|...|.+++.+-+ |.++||++..|+ |||||..++..+..+.    
T Consensus       147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~-Gt~vATaStkGTLIRIFdt~~g~~l~E~R----  221 (346)
T KOG2111|consen  147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ-GTLVATASTKGTLIRIFDTEDGTLLQELR----  221 (346)
T ss_pred             CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC-ccEEEEeccCcEEEEEEEcCCCcEeeeee----
Confidence                111122222233444433322112334568889999999998 899999999987 8999999998876653    


Q ss_pred             CCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          229 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                                     .|.....|.+++|+|++.+|+++|..|+|+||.++..
T Consensus       222 ---------------RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  222 ---------------RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             ---------------cCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence                           3333446999999999999999999999999999874

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=2.1e-11  Score=116.61  Aligned_cols=71  Identities=24%  Similarity=0.479  Sum_probs=66.3

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEE-EecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCcc
Q 004745          604 LGQRGDYIASGSDDGRWFIWEKQTGRLIKM-LLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSI  674 (732)
Q Consensus       604 ~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~-l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~  674 (732)
                      .-|+|++|.+|..-|.+..+|+.++++... |.|-++.|+++..+|.+++|||+|-|..|||+|+++.+.+.
T Consensus       255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence            468999999999999999999999998877 99999999999999999999999999999999999976653

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.42  E-value=7.4e-12  Score=119.72  Aligned_cols=223  Identities=12%  Similarity=0.118  Sum_probs=153.4

Q ss_pred             eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe----eEEEEccCCCcCeEEEEEecCCCCCEEEEEECC--CcEE
Q 004745           16 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AEVR   89 (732)
Q Consensus        16 ~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~----~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d--g~i~   89 (732)
                      .+.+++|..++.. || .|++|-.+|.+.+|..+.+.    .+..+  .-...+..+.-++.. ...+++|+..  ..++
T Consensus       102 ~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~-p~Iva~GGke~~n~lk  176 (412)
T KOG3881|consen  102 SLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTD-PYIVATGGKENINELK  176 (412)
T ss_pred             ccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCC-CceEecCchhccccee
Confidence            3445555555544 33 57778889999999987442    22233  222557777777765 3577779988  8899


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      |||+... .+.....+...-..--.-.-.++++.|.+.. ...||+++.-+.+++||.+.+..+                
T Consensus       177 iwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP----------------  239 (412)
T KOG3881|consen  177 IWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP----------------  239 (412)
T ss_pred             eeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc----------------
Confidence            9999964 2211111110000000123457888998831 588999999999999999876633                


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                              +....-...+++++...|. ++++++|..-+.+..||++.++.+...            +       .+-.+
T Consensus       240 --------V~~fd~~E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~kl~g~~------------~-------kg~tG  291 (412)
T KOG3881|consen  240 --------VAQFDFLENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGGKLLGCG------------L-------KGITG  291 (412)
T ss_pred             --------eeEeccccCcceeeeecCC-CcEEEEecccchhheecccCceeeccc------------c-------CCccC
Confidence                    2222223458999999998 899999999999999999988754331            0       33444


Q ss_pred             ccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeec
Q 004745          249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV  289 (732)
Q Consensus       249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  289 (732)
                       .|+++..+|++++|++++-|..|||+|+++-+.....+..
T Consensus       292 -sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK  331 (412)
T KOG3881|consen  292 -SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK  331 (412)
T ss_pred             -CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh
Confidence             5999999999999999999999999999995544444433

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.41  E-value=3.5e-12  Score=119.61  Aligned_cols=282  Identities=13%  Similarity=0.178  Sum_probs=174.8

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----eEEEEccCCC------------cCeEEEEEecCCCCCEEE
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----LLHSIETGHS------------ANVFCTKFVPETSDELVV   80 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~-----~~~~~~~~h~------------~~V~~~~~s~~~~g~~l~   80 (732)
                      -.+-|.++.|..+|.+||||..+|.|.++.-....     ....+ +.|.            ..|+.+.|.++++...++
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~f-qshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEF-QSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeee-eccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            35678999999999999999999999999643222     22222 3443            568999999987667788


Q ss_pred             EEECCCcEEEEEcCCCCCCCC-------------------------CCCCCCCceee-ccccCceeEEEEecCCCcEEEE
Q 004745           81 SGAGDAEVRLFNLSRFSGRGL-------------------------DDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWS  134 (732)
Q Consensus        81 s~~~dg~i~vwd~~~~~~~~~-------------------------~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s  134 (732)
                      ....|.+|++|.+.....+..                         ......|.+.+ .+|.-.|++|.++.|. ..+++
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~lS  181 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFLS  181 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEee
Confidence            888999999999875432220                         00001122222 3688889999999865 55545


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEEC
Q 004745          135 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  214 (732)
Q Consensus       135 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~  214 (732)
                       +.|=.|.+|++.-....           -.+++.+...-..      -...|++..|+|...++++-.++.|+|++-|+
T Consensus       182 -ADdLRINLWnlei~d~s-----------FnIVDIKP~nmEe------LteVITsaEFhp~~cn~f~YSSSKGtIrLcDm  243 (433)
T KOG1354|consen  182 -ADDLRINLWNLEIIDQS-----------FNIVDIKPANMEE------LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM  243 (433)
T ss_pred             -ccceeeeeccccccCCc-----------eeEEEccccCHHH------HHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence             45778999998765432           2233333222111      12367899999998899999999999999999


Q ss_pred             CCCCCCcccccCC--CCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeee-cCC
Q 004745          215 RMLPPLTSCQKRM--SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGD  291 (732)
Q Consensus       215 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~  291 (732)
                      +....-.......  +..+.-+.|...      - -..|..+.|+++|+++++-.. -+|++||+.....+...+. +..
T Consensus       244 R~~aLCd~hsKlfEepedp~~rsffse------i-IsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~  315 (433)
T KOG1354|consen  244 RQSALCDAHSKLFEEPEDPSSRSFFSE------I-ISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY  315 (433)
T ss_pred             hhhhhhcchhhhhccccCCcchhhHHH------H-hhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence            9543211100000  000000111000      1 114889999999998887543 5999999976444433322 211


Q ss_pred             CCceeee----ccCCCCccCCCCCCccCCCccccccccccCcchhhHH
Q 004745          292 ASKIMSF----TPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRML  335 (732)
Q Consensus       292 ~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l  335 (732)
                      ....++-    ...+.     -....++.++.+++   +++..+..++
T Consensus       316 lr~kLc~lYEnD~Ifd-----KFec~~sg~~~~v~---TGsy~n~frv  355 (433)
T KOG1354|consen  316 LRSKLCSLYENDAIFD-----KFECSWSGNDSYVM---TGSYNNVFRV  355 (433)
T ss_pred             HHHHHHHHhhccchhh-----eeEEEEcCCcceEe---cccccceEEE
Confidence            1111110    00010     11245777888888   8998888887

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.41  E-value=6.4e-11  Score=110.56  Aligned_cols=192  Identities=16%  Similarity=0.198  Sum_probs=127.2

Q ss_pred             CceeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           20 GCVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg-~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      +.|..+.|..|..+++.+ ..|+.|.+|++...+-...+ ......+.+++|+|++ ..+|.+...+-+|.||.+.+.++
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdg-rhiL~tseF~lriTVWSL~t~~~  126 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDG-RHILLTSEFDLRITVWSLNTQKG  126 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-ccCCCcceeeeECCCc-ceEeeeecceeEEEEEEecccee
Confidence            567788999988776655 67889999999999998888 5667789999999995 25677777899999999987543


Q ss_pred             CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004745           99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  178 (732)
Q Consensus        99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (732)
                                 ..++--+..+..++|+|++ ++.+.+++-...-...+...+                      ....+.
T Consensus       127 -----------~~~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~----------------------~W~ll~  172 (447)
T KOG4497|consen  127 -----------YLLPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCK----------------------AWILLK  172 (447)
T ss_pred             -----------EEecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhH----------------------HHHHHH
Confidence                       2222223456889999955 777766643111111111000                      001111


Q ss_pred             CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004745          179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  258 (732)
Q Consensus       179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  258 (732)
                      ...-.....+.+.|+|| |+.|++         ||---...+.                      .-+.+..+..++|+|
T Consensus       173 ~f~~dT~DltgieWsPd-g~~laV---------wd~~Leykv~----------------------aYe~~lG~k~v~wsP  220 (447)
T KOG4497|consen  173 EFKLDTIDLTGIEWSPD-GNWLAV---------WDNVLEYKVY----------------------AYERGLGLKFVEWSP  220 (447)
T ss_pred             hcCCCcccccCceECCC-CcEEEE---------ecchhhheee----------------------eeeeccceeEEEecc
Confidence            12223336788999999 666654         5432111000                      001122488999999


Q ss_pred             CCCEEEEEecCCeEEEEECCC
Q 004745          259 NGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       259 ~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .+++|++|+.|+.+||-+--+
T Consensus       221 ~~qflavGsyD~~lrvlnh~t  241 (447)
T KOG4497|consen  221 CNQFLAVGSYDQMLRVLNHFT  241 (447)
T ss_pred             ccceEEeeccchhhhhhceee
Confidence            999999999999999987655

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.41  E-value=8.7e-12  Score=116.11  Aligned_cols=192  Identities=14%  Similarity=0.151  Sum_probs=139.9

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeC-CCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~-~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      .+..++|..|...|++++|+|..+.|++++.|..-+||.. ..++  ....+ ..+...++++.|+|.+  +.|++|+.-
T Consensus        45 w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~WsP~e--nkFAVgSga  121 (361)
T KOG1523|consen   45 WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKWSPKE--NKFAVGSGA  121 (361)
T ss_pred             ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEeecCcC--ceEEeccCc
Confidence            4678899999999999999999999999999999999998 4443  33344 4688899999999995  899999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      ..|.||-++..+.=      ....+.-+.+...|+++.|+| ++-+++.|+.|+.+|++..--...-.+.       ...
T Consensus       122 r~isVcy~E~ENdW------WVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekp-------ap~  187 (361)
T KOG1523|consen  122 RLISVCYYEQENDW------WVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKP-------APT  187 (361)
T ss_pred             cEEEEEEEecccce------ehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCC-------CCC
Confidence            99999988753210      011234445778899999999 5489999999999999974322110000       000


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      -|+-+...-..+.+.....+.+..+.|+|+ |..|+-.+.|.++.+-|.....
T Consensus       188 pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s-G~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  188 PWGSKMPFGQLMSEASSSGGWVHGVLFSPS-GNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CCccCCcHHHHHHhhccCCCceeeeEeCCC-CCEeeEecCCCceEEeecCCCc
Confidence            111111111122223345668999999999 8899999999999999987654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=3.7e-11  Score=128.11  Aligned_cols=204  Identities=13%  Similarity=0.094  Sum_probs=131.0

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-EEEECC
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD   85 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~---dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-~s~~~d   85 (732)
                      ...+.+..|...+...+|+|||+.|+..+.   +..|++||+.+++... + ....+...+.+|+|++  +.| ++.+.+
T Consensus       194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l-~~~~g~~~~~~~SpDG--~~l~~~~s~~  269 (433)
T PRK04922        194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V-ASFRGINGAPSFSPDG--RRLALTLSRD  269 (433)
T ss_pred             CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e-ccCCCCccCceECCCC--CEEEEEEeCC
Confidence            345566677888999999999999998764   3469999998876543 2 2344556688999994  655 455666


Q ss_pred             C--cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CCCc--EEEEECCCCCCCCCCCCCCc
Q 004745           86 A--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGT--LRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        86 g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~--i~vwd~~~~~~~~~~~~~~~  160 (732)
                      |  .|.+||+.++.           +..+..+........|+|++ +.|+..+ .+|.  |.++|+.+++..        
T Consensus       270 g~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~~--------  329 (433)
T PRK04922        270 GNPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSAE--------  329 (433)
T ss_pred             CCceEEEEECCCCC-----------eEECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCeE--------
Confidence            5  58889987642           23444455555678999966 5555544 4554  556666554311        


Q ss_pred             ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC---eEEEEECCCCCCCcccccCCCCCCcccccc
Q 004745          161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFC  237 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  237 (732)
                                     .+..   ........+|+|+ ++.|+..+.++   .|.+||+.+++.. .+.             
T Consensus       330 ---------------~lt~---~g~~~~~~~~SpD-G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-------------  376 (433)
T PRK04922        330 ---------------RLTF---QGNYNARASVSPD-GKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-------------  376 (433)
T ss_pred             ---------------Eeec---CCCCccCEEECCC-CCEEEEEECCCCceeEEEEECCCCCeE-ECC-------------
Confidence                           1110   0112346799999 67777655433   6999999776432 110             


Q ss_pred             ccccccCCCccccEEEEEEcCCCCEEEEEecC---CeEEEEECCC
Q 004745          238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH  279 (732)
Q Consensus       238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d---g~v~iwd~~~  279 (732)
                            .+.   ......|+|||++|+..+.+   +.|+++++..
T Consensus       377 ------~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        377 ------PGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             ------CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence                  111   13356899999988877663   4677888754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=5.5e-11  Score=126.11  Aligned_cols=222  Identities=11%  Similarity=0.080  Sum_probs=134.5

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEe---CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEE-ECCC-
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGS---DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-AGDA-   86 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~---~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~-~~dg-   86 (732)
                      .+.+..+...+...+|||||+.|+..+   .+..|.+|++.+++.....  ...+.+....|+|+  |+.|+.. +.+| 
T Consensus       191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--~~~~~~~~~~~SPD--G~~La~~~~~~g~  266 (429)
T PRK03629        191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPD--GSKLAFALSKTGS  266 (429)
T ss_pred             CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc--CCCCCcCCeEECCC--CCEEEEEEcCCCC
Confidence            445556677899999999999988654   2457999999888643322  23344567899999  4666644 4455 


Q ss_pred             -cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC-CCcEEEE--ECCCCCCCCCCCCCCccc
Q 004745           87 -EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQH--DFRQGSSCPPAGSSHQEC  162 (732)
Q Consensus        87 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-dg~i~vw--d~~~~~~~~~~~~~~~~~  162 (732)
                       .|.+||+.++.           ...+..+...+....|+|++ +.|+..+. ++...+|  |+.+++..          
T Consensus       267 ~~I~~~d~~tg~-----------~~~lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~~----------  324 (429)
T PRK03629        267 LNLYVMDLASGQ-----------IRQVTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAPQ----------  324 (429)
T ss_pred             cEEEEEECCCCC-----------EEEccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCeE----------
Confidence             48888987532           23333344567889999966 55555444 4444555  55444310          


Q ss_pred             ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC---CeEEEEECCCCCCCcccccCCCCCCcccccccc
Q 004745          163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  239 (732)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (732)
                                   .+..   .........|+|+ +++|+..+.+   ..|.+||+.+++.. .+.               
T Consensus       325 -------------~lt~---~~~~~~~~~~SpD-G~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt---------------  371 (429)
T PRK03629        325 -------------RITW---EGSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT---------------  371 (429)
T ss_pred             -------------Eeec---CCCCccCEEECCC-CCEEEEEEccCCCceEEEEECCCCCeE-EeC---------------
Confidence                         1110   1113456789999 6677665543   35888998776421 110               


Q ss_pred             ccccCCCccccEEEEEEcCCCCEEEEEecCCe---EEEEECCCCCCcceeeecCCCCceeeecc
Q 004745          240 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH---VYLMDVNHAGGRAMRYTVGDASKIMSFTP  300 (732)
Q Consensus       240 ~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~---v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  300 (732)
                          ...   ......|+|||++|+.++.++.   ++++++.. +....+..+.......+|+|
T Consensus       372 ----~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        372 ----DTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ----CCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CCeEECccCCCCcCCcccCC
Confidence                001   1235689999999999988764   67777754 33333333333344444444

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.39  E-value=6.8e-12  Score=124.51  Aligned_cols=180  Identities=18%  Similarity=0.252  Sum_probs=125.6

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeeEEEEc---cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCC----
Q 004745           29 SKGSLLISGSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL----  101 (732)
Q Consensus        29 ~dg~~lasg~~dg~i~vWd~~~~~~~~~~~---~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~----  101 (732)
                      |++--|..|=.-|.|.+.|....+..+.+-   .-.+..|+|++|.|.. ...++.+-.+|.+.++|....-+...    
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~-~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGS-DSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCC-CceEEEEEecCceEEeeccccccCCCCccc
Confidence            455567777777889988876533222110   1234789999999986 46777778899999998753211100    


Q ss_pred             --------------CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745          102 --------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus       102 --------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                                    ......|+..+.--.+.|+.++|+| ++.+||+.+.||.+||+|..+.+..               
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLl---------------  325 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELL---------------  325 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHH---------------
Confidence                          0001133444444456899999999 5599999999999999999887632               


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                                ......-+...|++|+|| |++|++|+.|..|.||.+...+.+..-                    +||.
T Consensus       326 ----------g~mkSYFGGLLCvcWSPD-GKyIvtGGEDDLVtVwSf~erRVVARG--------------------qGHk  374 (636)
T KOG2394|consen  326 ----------GVMKSYFGGLLCVCWSPD-GKYIVTGGEDDLVTVWSFEERRVVARG--------------------QGHK  374 (636)
T ss_pred             ----------HHHHhhccceEEEEEcCC-ccEEEecCCcceEEEEEeccceEEEec--------------------cccc
Confidence                      111223347899999999 899999999999999999877544321                    5565


Q ss_pred             cccEEEEEEc
Q 004745          248 SLHLTHVTFS  257 (732)
Q Consensus       248 ~~~i~~l~~s  257 (732)
                      . +|+.|+|.
T Consensus       375 S-WVs~VaFD  383 (636)
T KOG2394|consen  375 S-WVSVVAFD  383 (636)
T ss_pred             c-ceeeEeec
Confidence            5 78888887

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=8.7e-11  Score=125.44  Aligned_cols=206  Identities=11%  Similarity=0.064  Sum_probs=134.7

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-EEEECC
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD   85 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~---dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-~s~~~d   85 (732)
                      ...+.+..|...+...+|+|||+.|+..+.   +..|.+||+.+++.. .+ ..+.+.+.+.+|+|++  +.| ++.+.+
T Consensus       192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l-~~~~g~~~~~~~SPDG--~~la~~~~~~  267 (435)
T PRK05137        192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV-GNFPGMTFAPRFSPDG--RKVVMSLSQG  267 (435)
T ss_pred             CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee-ecCCCcccCcEECCCC--CEEEEEEecC
Confidence            345667788899999999999999888763   468999999888654 33 3566778899999994  655 566666


Q ss_pred             Cc--EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CCC--cEEEEECCCCCCCCCCCCCCc
Q 004745           86 AE--VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        86 g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~  160 (732)
                      +.  |.+||+.++.           ...+..+........|+|++ +.|+..+ .+|  .|.+||+..++..        
T Consensus       268 g~~~Iy~~d~~~~~-----------~~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~--------  327 (435)
T PRK05137        268 GNTDIYTMDLRSGT-----------TTRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPR--------  327 (435)
T ss_pred             CCceEEEEECCCCc-----------eEEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeE--------
Confidence            65  6666776532           34444455566778999976 5555544 333  5777787654311        


Q ss_pred             ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC---CeEEEEECCCCCCCcccccCCCCCCcccccc
Q 004745          161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  237 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  237 (732)
                                     .+..   ....+....|+|+ ++.|+....+   ..|.+||+..... ..+.             
T Consensus       328 ---------------~lt~---~~~~~~~~~~Spd-G~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-------------  374 (435)
T PRK05137        328 ---------------RISF---GGGRYSTPVWSPR-GDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-------------  374 (435)
T ss_pred             ---------------Eeec---CCCcccCeEECCC-CCEEEEEEcCCCceEEEEEECCCCce-Eecc-------------
Confidence                           1111   1123456789999 6777766543   3588888754321 1110             


Q ss_pred             ccccccCCCccccEEEEEEcCCCCEEEEEecC------CeEEEEECCCCC
Q 004745          238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG------EHVYLMDVNHAG  281 (732)
Q Consensus       238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d------g~v~iwd~~~~~  281 (732)
                            .+.   .+....|+|||+.|+..+.+      ..++++|+....
T Consensus       375 ------~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        375 ------SGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             ------CCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence                  111   25568999999988776553      257888886643

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=5.5e-11  Score=126.27  Aligned_cols=227  Identities=10%  Similarity=0.077  Sum_probs=138.6

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEE-EEECC
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGD   85 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~-s~~~d   85 (732)
                      ...+.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... + ....+.+.+..|+|++  +.|+ +.+.+
T Consensus       186 ~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPDG--~~la~~~~~~  261 (427)
T PRK02889        186 QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPDG--RTLAVALSRD  261 (427)
T ss_pred             CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCCC--CEEEEEEccC
Confidence            3445566788899999999999999877643   459999999887643 3 2344566789999994  6665 66778


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC--CCCCCCCCCCCCcccc
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QGSSCPPAGSSHQECR  163 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~  163 (732)
                      +...||.+....+.         ...+..+........|+|++..++++...+|...+|.+.  .++.            
T Consensus       262 g~~~Iy~~d~~~~~---------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~------------  320 (427)
T PRK02889        262 GNSQIYTVNADGSG---------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA------------  320 (427)
T ss_pred             CCceEEEEECCCCC---------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce------------
Confidence            88777766532221         344444555567788999764444444445666777653  2220            


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC---eEEEEECCCCCCCcccccCCCCCCccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  240 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (732)
                                 ..+... +  .......|+|+ |++|+..+.++   .|.+||+.+++.. .+.                
T Consensus       321 -----------~~lt~~-g--~~~~~~~~SpD-G~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt----------------  368 (427)
T PRK02889        321 -----------QRVTFT-G--SYNTSPRISPD-GKLLAYISRVGGAFKLYVQDLATGQVT-ALT----------------  368 (427)
T ss_pred             -----------EEEecC-C--CCcCceEECCC-CCEEEEEEccCCcEEEEEEECCCCCeE-Ecc----------------
Confidence                       001100 1  12235689999 77887766554   6999999876421 110                


Q ss_pred             cccCCCccccEEEEEEcCCCCEEEEEecCC---eEEEEECCCCCCcceeeecCCCCceeeecc
Q 004745          241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTP  300 (732)
Q Consensus       241 ~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  300 (732)
                         .+.   ......|+|||+.|+.++.++   .+++.++. ++....+..........+|+|
T Consensus       369 ---~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        369 ---DTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             ---CCC---CccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCC
Confidence               111   134579999999988887643   35555663 333333333333444445554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=1.3e-10  Score=116.40  Aligned_cols=221  Identities=16%  Similarity=0.173  Sum_probs=141.9

Q ss_pred             hhhhhccccEeeeccCCceeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEE-ecCCCCCEEEE
Q 004745            4 SLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF-VPETSDELVVS   81 (732)
Q Consensus         4 ~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~l-asg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~-s~~~~g~~l~s   81 (732)
                      .+.++.++++.| +|....+.|..+|||+|+ |||.+-..|++||+.+......-  .-...|..+.. +.+-  ..++-
T Consensus        37 ~~~~rieLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER--hlDae~V~feiLsDD~--SK~v~  111 (703)
T KOG2321|consen   37 DYRQRIELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER--HLDAEVVDFEILSDDY--SKSVF  111 (703)
T ss_pred             HHHHHHHHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee--cccccceeEEEeccch--hhheE
Confidence            455667777777 488889999999999965 56778899999999876543222  22333433333 3331  23333


Q ss_pred             EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004745           82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      --.|.+|.+..-.   +..         ..++ -...-..+.++.....+++.|+ ...|+-.++..+..+         
T Consensus       112 L~~DR~IefHak~---G~h---------y~~R-IP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL---------  168 (703)
T KOG2321|consen  112 LQNDRTIEFHAKY---GRH---------YRTR-IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFL---------  168 (703)
T ss_pred             eecCceeeehhhc---Cee---------eeee-cCcCCccccccCCCccEEEeec-CcceEEEEccccccc---------
Confidence            4457777665332   110         0000 1222345566544445554444 457888899888733         


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                                      .........+++|..++. ..+|++|+.+|.|..||.++......+......+        .+.
T Consensus       169 ----------------~P~~~~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~--------s~p  223 (703)
T KOG2321|consen  169 ----------------NPFETDSGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN--------SHP  223 (703)
T ss_pred             ----------------cccccccccceeeeecCc-cceEEecccCceEEEecchhhhhheeeecccccC--------CCc
Confidence                            111122347899999998 4599999999999999999887665553222110        011


Q ss_pred             ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                        .+.....|+++.|+.+|-.+++|+.+|.|+|||++.
T Consensus       224 --g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa  259 (703)
T KOG2321|consen  224 --GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA  259 (703)
T ss_pred             --cccccCcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence              122223599999999999999999999999999998

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.35  E-value=4.5e-11  Score=112.43  Aligned_cols=244  Identities=18%  Similarity=0.189  Sum_probs=175.7

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd-~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      .++.+.+.++||.+.|++...-|...-+++.+.|.++|||- .+.++.-..+......+++++++.++.  ..|+.|-..
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~n   89 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDN   89 (404)
T ss_pred             cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEec
Confidence            35567788999999999998888878899999999999994 445555444534456789999999985  788888899


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCC----------
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA----------  155 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~----------  155 (732)
                      |++.-+.+..--      ++...++....|...+..+.|+- ....+++.+.|..+..--.+.+..+..-          
T Consensus        90 gtvtefs~sedf------nkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~  162 (404)
T KOG1409|consen   90 GTVTEFALSEDF------NKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ  162 (404)
T ss_pred             ceEEEEEhhhhh------hhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence            999888765311      12244567778999999999987 4578889999987755555554433110          


Q ss_pred             ------CCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCC
Q 004745          156 ------GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  229 (732)
Q Consensus       156 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~  229 (732)
                            +.+..........+.......+....+|...+++++|.|. ..+|.+|..|..+.+||+.-.+.+.-       
T Consensus       163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~~-------  234 (404)
T KOG1409|consen  163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTAY-------  234 (404)
T ss_pred             eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcceee-------
Confidence                  0111111112222222333455566789999999999998 67999999999999999975542211       


Q ss_pred             CCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          230 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                                  ...+|.+ .|..+..-+--+.|.+++.||.|.+|+++..
T Consensus       235 ------------el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  235 ------------ELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             ------------eeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence                        1155655 4777777777888999999999999999874

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.34  E-value=1.3e-11  Score=122.33  Aligned_cols=175  Identities=15%  Similarity=0.242  Sum_probs=126.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCcee
Q 004745           32 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL  111 (732)
Q Consensus        32 ~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  111 (732)
                      ..++.++.||.+.|-+ +.++....+ ..|.++|.|-.|+|+  |.-|+++++||.|++|.-...           ...+
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv-~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrsGM-----------LRSt  140 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSI-SAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRSGM-----------LRST  140 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhh-hhhhhhhhhcccCCC--CceeeeecCCceEEEEeccch-----------HHHH
Confidence            3677788999999987 556666666 799999999999999  588999999999999975521           1234


Q ss_pred             eccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEE
Q 004745          112 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD  191 (732)
Q Consensus       112 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  191 (732)
                      +.....+|.|++|.|+..+.+.+.+  +.+.|=-+.....                         +..-..|.+-|.++.
T Consensus       141 l~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k-------------------------~i~WkAHDGiiL~~~  193 (737)
T KOG1524|consen  141 VVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK-------------------------IIRWRAHDGLVLSLS  193 (737)
T ss_pred             HhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccc-------------------------eeEEeccCcEEEEee
Confidence            4455678999999997766666554  4555544433321                         111234677899999


Q ss_pred             ecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCe
Q 004745          192 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH  271 (732)
Q Consensus       192 ~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~  271 (732)
                      |++. .+++++|+.|-..+|||..... +...                    ..|.- +|++++|.|+ +.++.++. ++
T Consensus       194 W~~~-s~lI~sgGED~kfKvWD~~G~~-Lf~S--------------------~~~ey-~ITSva~npd-~~~~v~S~-nt  248 (737)
T KOG1524|consen  194 WSTQ-SNIIASGGEDFRFKIWDAQGAN-LFTS--------------------AAEEY-AITSVAFNPE-KDYLLWSY-NT  248 (737)
T ss_pred             cCcc-ccceeecCCceeEEeecccCcc-cccC--------------------Chhcc-ceeeeeeccc-cceeeeee-ee
Confidence            9999 7899999999999999986432 2211                    22333 7999999999 44555543 35


Q ss_pred             EE
Q 004745          272 VY  273 (732)
Q Consensus       272 v~  273 (732)
                      ++
T Consensus       249 ~R  250 (737)
T KOG1524|consen  249 AR  250 (737)
T ss_pred             ee
Confidence            55

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=8e-10  Score=117.26  Aligned_cols=175  Identities=13%  Similarity=0.133  Sum_probs=105.0

Q ss_pred             CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCCCCCCCCCCCCceeeccccC
Q 004745           41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  117 (732)
Q Consensus        41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~  117 (732)
                      ..|.+||....... .+ ..+...+...+|+|+  |+.|+..+.   +..|.+|++.++....        +..+.   .
T Consensus       179 ~~l~~~d~dg~~~~-~l-t~~~~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~~~--------l~~~~---~  243 (429)
T PRK03629        179 YELRVSDYDGYNQF-VV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAVRQ--------VASFP---R  243 (429)
T ss_pred             eeEEEEcCCCCCCE-Ee-ecCCCceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCeEE--------ccCCC---C
Confidence            36899997755443 33 356678999999999  577776542   3568999987643211        22233   3


Q ss_pred             ceeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004745          118 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  195 (732)
Q Consensus       118 ~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  195 (732)
                      .+..+.|+|++..++++.+.+|  .|.+||+.+++..                       .+.   .....+....|+|+
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-----------------------~lt---~~~~~~~~~~wSPD  297 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-----------------------QVT---DGRSNNTEPTWFPD  297 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----------------------Ecc---CCCCCcCceEECCC
Confidence            3456899997744555555555  4888998776421                       111   11224567899999


Q ss_pred             CCCEEEEEeC-CCeEEE--EECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC---
Q 004745          196 RPHLLLVGGS-DAFARL--YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---  269 (732)
Q Consensus       196 ~~~~l~tg~~-dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d---  269 (732)
                       ++.|+..+. ++...|  +|+.+++. ..+.                  ..+  . ......|+|+|++|+..+.+   
T Consensus       298 -G~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt------------------~~~--~-~~~~~~~SpDG~~Ia~~~~~~g~  354 (429)
T PRK03629        298 -SQNLAYTSDQAGRPQVYKVNINGGAP-QRIT------------------WEG--S-QNQDADVSSDGKFMVMVSSNGGQ  354 (429)
T ss_pred             -CCEEEEEeCCCCCceEEEEECCCCCe-EEee------------------cCC--C-CccCEEECCCCCEEEEEEccCCC
Confidence             677766554 344444  46654421 1110                  011  1 24568899999988876653   


Q ss_pred             CeEEEEECCC
Q 004745          270 EHVYLMDVNH  279 (732)
Q Consensus       270 g~v~iwd~~~  279 (732)
                      ..|++||+.+
T Consensus       355 ~~I~~~dl~~  364 (429)
T PRK03629        355 QHIAKQDLAT  364 (429)
T ss_pred             ceEEEEECCC
Confidence            2466666654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.31  E-value=2.6e-12  Score=125.21  Aligned_cols=191  Identities=16%  Similarity=0.204  Sum_probs=151.5

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      ...|.++.|-.+.+++|++- ...++||| ..|..++.+ ..| ..|..+.|.|..  -+|++++..|.++--|+.+++ 
T Consensus       170 ~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHCl-k~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~Gk-  242 (545)
T KOG1272|consen  170 METVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCL-KRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGK-  242 (545)
T ss_pred             hhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeeh-hhc-Cchhhhcccchh--heeeecccCCceEEEeechhh-
Confidence            46788888888888888875 46899999 678888887 344 568999999995  778888999999999999853 


Q ss_pred             CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004745           99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  178 (732)
Q Consensus        99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (732)
                               .+..+..-.+.+..+.-+|.+ -.+-+|...|+|.+|.....++                         +.
T Consensus       243 ---------lVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skeP-------------------------Lv  287 (545)
T KOG1272|consen  243 ---------LVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEP-------------------------LV  287 (545)
T ss_pred             ---------hhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcch-------------------------HH
Confidence                     256666667888889999965 7888999999999999887763                         23


Q ss_pred             CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004745          179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  258 (732)
Q Consensus       179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  258 (732)
                      ....|.++|.++++.++ |++++|.+.|..++|||+++..++.+...                      ..+...++||.
T Consensus       288 KiLcH~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----------------------p~~a~~ls~Sq  344 (545)
T KOG1272|consen  288 KILCHRGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFYQLHTYRT----------------------PHPASNLSLSQ  344 (545)
T ss_pred             HHHhcCCCcceEEECCC-CcEEeecccccceeEeeeccccccceeec----------------------CCCcccccccc
Confidence            33457789999999998 89999999999999999998876554421                      11366788887


Q ss_pred             CCCEEEEEecCCeEEEEE
Q 004745          259 NGEEVLLSYSGEHVYLMD  276 (732)
Q Consensus       259 ~g~~l~~~~~dg~v~iwd  276 (732)
                      .|  +++.+....|.||.
T Consensus       345 kg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  345 KG--LLALSYGDHVQIWK  360 (545)
T ss_pred             cc--ceeeecCCeeeeeh
Confidence            76  55566666999994

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=2.3e-11  Score=119.45  Aligned_cols=290  Identities=14%  Similarity=0.114  Sum_probs=195.6

Q ss_pred             CchhhhhhccccEeeeccCCceeEEEEcC--CCCEEEEEeCCCcEEEEeCC-CCeeE--EEEccCCCcCeEEEEEecCCC
Q 004745            1 MHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYS-SRKLL--HSIETGHSANVFCTKFVPETS   75 (732)
Q Consensus         1 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~-~~~~~--~~~~~~h~~~V~~~~~s~~~~   75 (732)
                      |-|+|.+.-.......||...|....|-|  +.+-+++++.||.|++=.+. ++.+.  ..+ ..|.++|..++.-|.. 
T Consensus       167 v~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl-~~h~g~vhklav~p~s-  244 (559)
T KOG1334|consen  167 VVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL-APHEGPVHKLAVEPDS-  244 (559)
T ss_pred             EeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec-ccccCccceeeecCCC-
Confidence            35778877777777889999999999988  34689999999999998754 34333  334 6899999999999987 


Q ss_pred             CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccC---ceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004745           76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  152 (732)
Q Consensus        76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~  152 (732)
                      ...|.|++.|+.+.-.|++......       .+..-..+..   ....|+..|.+.+.+++++.|..+++||.+.-...
T Consensus       245 p~~f~S~geD~~v~~~Dlr~~~pa~-------~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e  317 (559)
T KOG1334|consen  245 PKPFLSCGEDAVVFHIDLRQDVPAE-------KFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE  317 (559)
T ss_pred             CCcccccccccceeeeeeccCCccc-------eeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc
Confidence            5889999999999999998643221       1122222333   57889999988889999999999999998875532


Q ss_pred             CCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCc
Q 004745          153 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  232 (732)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  232 (732)
                      ......+.-|...+             .......|+++.|+.+++. |.+.-.|-.|+++.-..+. .....   +.. .
T Consensus       318 ~~n~~~~~f~p~hl-------------~~d~~v~ITgl~Ysh~~sE-lLaSYnDe~IYLF~~~~~~-G~~p~---~~s-~  378 (559)
T KOG1334|consen  318 ENNGVLDKFCPHHL-------------VEDDPVNITGLVYSHDGSE-LLASYNDEDIYLFNKSMGD-GSEPD---PSS-P  378 (559)
T ss_pred             cccchhhhcCCccc-------------cccCcccceeEEecCCccc-eeeeecccceEEecccccc-CCCCC---CCc-c
Confidence            11111111111111             1133447999999988555 4555667789999443221 11100   000 0


Q ss_pred             cccccccccccCCCcc-ccEEEEEE-cCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCC
Q 004745          233 VNYFCPMHLSEHGRSS-LHLTHVTF-SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP  310 (732)
Q Consensus       233 ~~~~~~~~~~~~~~~~-~~i~~l~~-sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (732)
                      ...+.+..+  .||.+ ..|..+-| -|...|+++|+.-|.|.||+-.+++....+.+..+.++.+.-+|.+        
T Consensus       379 ~~~~~k~vY--KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~--------  448 (559)
T KOG1334|consen  379 REQYVKRVY--KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL--------  448 (559)
T ss_pred             hhhccchhh--cccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC--------
Confidence            011112212  45543 24777765 4788999999999999999999988777777777777766666643        


Q ss_pred             CCccCCCccccccccccCcchhhHHHHHHHhhhh
Q 004745          311 IHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLE  344 (732)
Q Consensus       311 ~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~  344 (732)
                              -.+|   +.+.|.-++|     |...
T Consensus       449 --------PvLA---sSGid~DVKI-----WTP~  466 (559)
T KOG1334|consen  449 --------PVLA---SSGIDHDVKI-----WTPL  466 (559)
T ss_pred             --------chhh---ccCCccceee-----ecCC
Confidence                    2344   7888888888     7763

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.30  E-value=1.2e-10  Score=115.73  Aligned_cols=245  Identities=18%  Similarity=0.158  Sum_probs=151.9

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEE----EEccCCCcCeEEEEEe-----cCCCCCEEEEEECCCcEEEEE
Q 004745           22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH----SIETGHSANVFCTKFV-----PETSDELVVSGAGDAEVRLFN   92 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~----~~~~~h~~~V~~~~~s-----~~~~g~~l~s~~~dg~i~vwd   92 (732)
                      ++...++-.|.+|+-.-. ..+++|+...+..+.    ...... ....|-+|.     |.  +--++.|-.-|.|.+.|
T Consensus       126 ~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~g-t~P~cHdfn~~~a~~~--g~dllIGf~tGqvq~id  201 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKG-TSPTCHDFNSFTATPK--GLDLLIGFTTGQVQLID  201 (636)
T ss_pred             eeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccC-CCCceecccccccCCC--CcceEEeeccCceEEec
Confidence            334444445666554322 358888877432221    110111 223344442     33  34577777889999988


Q ss_pred             cCCCCCCCCCCCCCCCcee--eccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCC-CCCCCCCcccc--eEEe
Q 004745           93 LSRFSGRGLDDNAITPSAL--YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC-PPAGSSHQECR--NILL  167 (732)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~--~~~~  167 (732)
                      .....-.        .+..  ..-.+..|+++.|-|.+..+|+.+-.+|.+.++|..-.... ...........  .+..
T Consensus       202 p~~~~~s--------klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t  273 (636)
T KOG2394|consen  202 PINFEVS--------KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILT  273 (636)
T ss_pred             chhhHHH--------HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEee
Confidence            7642100        0010  01124789999999988889999999999999987332111 01111111111  1111


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                      ........++.........|...+|+|| |++||+.+.||.+||||..+.+.+..+          +.          .-
T Consensus       274 ~ksk~~rNPv~~w~~~~g~in~f~FS~D-G~~LA~VSqDGfLRvF~fdt~eLlg~m----------kS----------YF  332 (636)
T KOG2394|consen  274 SKSKKTRNPVARWHIGEGSINEFAFSPD-GKYLATVSQDGFLRIFDFDTQELLGVM----------KS----------YF  332 (636)
T ss_pred             eeccccCCccceeEeccccccceeEcCC-CceEEEEecCceEEEeeccHHHHHHHH----------Hh----------hc
Confidence            1000000122222233458899999998 899999999999999999987654333          11          11


Q ss_pred             cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeecc
Q 004745          248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  300 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  300 (732)
                      + ...|++|+|||++|++|+.|..|.||.+...+.+..-.+|...+..++|.|
T Consensus       333 G-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  333 G-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             c-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            2 389999999999999999999999999999777777777788888888887

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=4.8e-10  Score=106.28  Aligned_cols=227  Identities=16%  Similarity=0.236  Sum_probs=144.5

Q ss_pred             eccCCceeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004745           16 EGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS   94 (732)
Q Consensus        16 ~~h~~~V~~l~~s~dg~~lasg~-~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~   94 (732)
                      .|| .+|+.|.|++||..|++++ .|..|+|||+.++..+... ..-.+.+.-+.|||+  |++|+.+.-|+..++|...
T Consensus       193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPd--gd~lfaAt~davfrlw~e~  268 (445)
T KOG2139|consen  193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPD--GDVLFAATCDAVFRLWQEN  268 (445)
T ss_pred             CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCC--CCEEEEecccceeeeehhc
Confidence            345 7999999999999999987 4688999999999877655 344567899999999  5899999999999999654


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCC-CCCcccceEEeeccCCc
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-SSHQECRNILLDLRCGA  173 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  173 (732)
                      ..--          ......-.+.|....|+|.+..+|++++..  -++|.+.-........ .........+.++..-.
T Consensus       269 q~wt----------~erw~lgsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~t  336 (445)
T KOG2139|consen  269 QSWT----------KERWILGSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVT  336 (445)
T ss_pred             ccce----------ecceeccCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhh
Confidence            3110          111222345899999999886777777654  4556655443332222 22222333444443211


Q ss_pred             cccccCCCCCccceEEEEecCCCCCEEEEEeCCCe--------EEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004745          174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF--------ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  245 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~--------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (732)
                        .........+.+.+++|+|. |.+|++.-..+.        |.+||.+......-.            ++...   .+
T Consensus       337 --i~ag~~l~cgeaq~lawDps-GeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels------------~cg~i---~g  398 (445)
T KOG2139|consen  337 --ICAGQRLCCGEAQCLAWDPS-GEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELS------------YCGMI---GG  398 (445)
T ss_pred             --hhcCcccccCccceeeECCC-CCEEEEEEcCCchhhhhhhhhhhhcccccCceEEE------------ecccc---cC
Confidence              11111123457889999999 889998765443        667777654322111            11111   11


Q ss_pred             CccccEEEEEEcC---CCCEEEEEecCCeEEEEECCC
Q 004745          246 RSSLHLTHVTFSP---NGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       246 ~~~~~i~~l~~sp---~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .   ...-+.|+|   +|.+|.++-..|.+.-|++.-
T Consensus       399 e---~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f  432 (445)
T KOG2139|consen  399 E---YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF  432 (445)
T ss_pred             C---CCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence            1   123456665   678888888888888887643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.27  E-value=2.3e-09  Score=110.23  Aligned_cols=174  Identities=12%  Similarity=0.176  Sum_probs=111.1

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE-CCC
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDA   86 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~-~dg   86 (732)
                      +.+.+..+......-..+.|+|||+++.+++.||.|.++|+.+++.+.++..  .....+++++++  |++++++. ..+
T Consensus        25 t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~D--G~~~~v~n~~~~  100 (369)
T PF02239_consen   25 TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPD--GKYVYVANYEPG  100 (369)
T ss_dssp             T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--T--TTEEEEEEEETT
T ss_pred             CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEEEcCC--CCEEEEEecCCC
Confidence            4567777776555445578999999999999999999999999999999943  334688999999  58877665 689


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeecc-------ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH  159 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  159 (732)
                      .+.++|.++.+          +++.+..       ....+.+|..+|..+.++++.-+.+.|.+-|....+..       
T Consensus       101 ~v~v~D~~tle----------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~-------  163 (369)
T PF02239_consen  101 TVSVIDAETLE----------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL-------  163 (369)
T ss_dssp             EEEEEETTT------------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-------
T ss_pred             ceeEecccccc----------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-------
Confidence            99999998742          2443332       23457788888855445555455577888887665421       


Q ss_pred             cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEE-EeCCCeEEEEECCCCCCC
Q 004745          160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPPL  220 (732)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t-g~~dg~v~iwd~~~~~~~  220 (732)
                           ....+.            .........|+|+ ++++++ ....+.|-++|..+.+..
T Consensus       164 -----~~~~i~------------~g~~~~D~~~dpd-gry~~va~~~sn~i~viD~~~~k~v  207 (369)
T PF02239_consen  164 -----KVTTIK------------VGRFPHDGGFDPD-GRYFLVAANGSNKIAVIDTKTGKLV  207 (369)
T ss_dssp             -----EEEEEE--------------TTEEEEEE-TT-SSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             -----ceeeec------------ccccccccccCcc-cceeeecccccceeEEEeeccceEE
Confidence                 000111            1125577899999 565544 556779999998876543

...

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.25  E-value=4.9e-10  Score=104.29  Aligned_cols=151  Identities=13%  Similarity=0.159  Sum_probs=99.2

Q ss_pred             EEEEEecCCCCCEEEEEEC----------CCcEEEEEcCCCCCCCCCCCCCCCceeecc-ccCceeEEEEecCCCcEEEE
Q 004745           66 FCTKFVPETSDELVVSGAG----------DAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWS  134 (732)
Q Consensus        66 ~~~~~s~~~~g~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s  134 (732)
                      ..+.|+|.+  ++|+.-..          -+...+|.++.....         +..+.- ..++|.+++|+|++..+++.
T Consensus         9 ~~~~W~~~G--~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---------~~~i~l~~~~~I~~~~WsP~g~~favi   77 (194)
T PF08662_consen    9 AKLHWQPSG--DYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---------VESIELKKEGPIHDVAWSPNGNEFAVI   77 (194)
T ss_pred             EEEEecccC--CEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---------cceeeccCCCceEEEEECcCCCEEEEE
Confidence            356788874  55443322          134666666543221         233322 34579999999976444333


Q ss_pred             -EeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC---CeEE
Q 004745          135 -ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFAR  210 (732)
Q Consensus       135 -~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---g~v~  210 (732)
                       |..++.|.+||++...               +..+             ....+..+.|+|+ |++|++++.+   |.|.
T Consensus        78 ~g~~~~~v~lyd~~~~~---------------i~~~-------------~~~~~n~i~wsP~-G~~l~~~g~~n~~G~l~  128 (194)
T PF08662_consen   78 YGSMPAKVTLYDVKGKK---------------IFSF-------------GTQPRNTISWSPD-GRFLVLAGFGNLNGDLE  128 (194)
T ss_pred             EccCCcccEEEcCcccE---------------eEee-------------cCCCceEEEECCC-CCEEEEEEccCCCcEEE
Confidence             4456789999996221               1111             1235678999999 7899888754   6799


Q ss_pred             EEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec------CCeEEEEECCC
Q 004745          211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNH  279 (732)
Q Consensus       211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~------dg~v~iwd~~~  279 (732)
                      +||+++.+.+...                     .|.  .++.++|+|+|++|++++.      |+.++||++..
T Consensus       129 ~wd~~~~~~i~~~---------------------~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  129 FWDVRKKKKISTF---------------------EHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEECCCCEEeecc---------------------ccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            9999977655432                     122  3789999999999999975      78899999865

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.21  E-value=7.6e-10  Score=102.98  Aligned_cols=148  Identities=13%  Similarity=0.180  Sum_probs=100.9

Q ss_pred             EEEEcCCCCEEEEEeC----------CCcEEEEeCCC-CeeEEEEccCCCcCeEEEEEecCCCCCEEEEE--ECCCcEEE
Q 004745           24 AISWNSKGSLLISGSD----------DTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSG--AGDAEVRL   90 (732)
Q Consensus        24 ~l~~s~dg~~lasg~~----------dg~i~vWd~~~-~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~--~~dg~i~v   90 (732)
                      .+.|+|+|++|+.-..          -+...||.++. ......+.....++|.+++|+|++  +.|+..  ..+..|.+
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g--~~favi~g~~~~~v~l   87 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNG--NEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCC--CEEEEEEccCCcccEE
Confidence            5789999987765332          13355555532 233444423455679999999994  665443  45779999


Q ss_pred             EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC---CCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE---DGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      ||++.           .++..+  +...++.+.|+|++ ++|++++.   .|.|.+||+++.+.+               
T Consensus        88 yd~~~-----------~~i~~~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i---------------  138 (194)
T PF08662_consen   88 YDVKG-----------KKIFSF--GTQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKI---------------  138 (194)
T ss_pred             EcCcc-----------cEeEee--cCCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEe---------------
Confidence            99972           224444  35678899999965 78888764   366999999866532               


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC------CCeEEEEECC
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRR  215 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~------dg~v~iwd~~  215 (732)
                                ...  ....++.++|+|+ |++|++++.      |+.++||+..
T Consensus       139 ----------~~~--~~~~~t~~~WsPd-Gr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  139 ----------STF--EHSDATDVEWSPD-GRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             ----------ecc--ccCcEEEEEEcCC-CCEEEEEEeccceeccccEEEEEec
Confidence                      111  1124689999999 788888764      7889999986

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.19  E-value=3.2e-09  Score=113.65  Aligned_cols=203  Identities=13%  Similarity=0.078  Sum_probs=128.5

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEE-EEECC
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGD   85 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~-s~~~d   85 (732)
                      ...+.+..+...+...+|+|||++|+.+..+   ..|++||+.+++....  ..+...+.+++|+|++  +.|+ +.+.+
T Consensus       180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spDg--~~l~~~~~~~  255 (417)
T TIGR02800       180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPDG--SKLAVSLSKD  255 (417)
T ss_pred             CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCCC--CEEEEEECCC
Confidence            3455566677789999999999999987643   4799999998865433  2455667789999994  6554 55544


Q ss_pred             C--cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CCC--cEEEEECCCCCCCCCCCCCCc
Q 004745           86 A--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        86 g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~  160 (732)
                      +  .|.+||+.++.           ...+..+........|+|++ +.|+..+ .++  .|.++|+.+++..        
T Consensus       256 ~~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~~--------  315 (417)
T TIGR02800       256 GNPDIYVMDLDGKQ-----------LTRLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEVR--------  315 (417)
T ss_pred             CCccEEEEECCCCC-----------EEECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCEE--------
Confidence            4  58888887532           23333344445567899966 5554444 344  4777776654310        


Q ss_pred             ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC---eEEEEECCCCCCCcccccCCCCCCcccccc
Q 004745          161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFC  237 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  237 (732)
                                     .+.   .+........|+|+ +++|+.++.++   .|.+||+.+... ..+.             
T Consensus       316 ---------------~l~---~~~~~~~~~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~-------------  362 (417)
T TIGR02800       316 ---------------RLT---FRGGYNASPSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGE-RVLT-------------  362 (417)
T ss_pred             ---------------Eee---cCCCCccCeEECCC-CCEEEEEEccCCceEEEEEeCCCCCe-EEcc-------------
Confidence                           010   01124566789998 67888777765   788999876431 1110             


Q ss_pred             ccccccCCCccccEEEEEEcCCCCEEEEEecCC---eEEEEECC
Q 004745          238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVN  278 (732)
Q Consensus       238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg---~v~iwd~~  278 (732)
                            . . . ......|+|+|++|+..+.++   .+++.+..
T Consensus       363 ------~-~-~-~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       363 ------D-T-G-LDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             ------C-C-C-CCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence                  0 0 0 123458999999888887754   45555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.18  E-value=4.1e-09  Score=104.63  Aligned_cols=186  Identities=14%  Similarity=0.121  Sum_probs=116.5

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc----------
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE----------   87 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~----------   87 (732)
                      -.-++..++|||.|.+|++.... .|.+|+-..+..+.++  .| ..|..+.|+|.  +++|.+=+..+.          
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~--~~-~~V~~~~fSP~--~kYL~tw~~~pi~~pe~e~sp~  104 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF--RH-PDVKYLDFSPN--EKYLVTWSREPIIEPEIEISPF  104 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchhheeee--ec-CCceecccCcc--cceeeeeccCCccChhhccCCc
Confidence            45689999999999999987664 5999998877766666  24 35899999999  589998765444          


Q ss_pred             -----EEEEEcCCCCCCCCCCCCCCCceeeccccCc--ee-EEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004745           88 -----VRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH  159 (732)
Q Consensus        88 -----i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  159 (732)
                           +.+||+..+.          .+..+..-..+  .. -+.|+-++ .+.|-... ..++|+++ +....       
T Consensus       105 ~~~n~~~vwd~~sg~----------iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARvv~-~sl~i~e~-t~n~~-------  164 (561)
T COG5354         105 TSKNNVFVWDIASGM----------IVFSFNGISQPYLGWPVLKFSIDD-KYVARVVG-SSLYIHEI-TDNIE-------  164 (561)
T ss_pred             cccCceeEEeccCce----------eEeeccccCCcccccceeeeeecc-hhhhhhcc-CeEEEEec-CCccc-------
Confidence                 8999998642          14444443333  33 56777744 66654433 46999997 43311       


Q ss_pred             cccceEEeeccCCccccccCCCCCccceEEEEecCC-CCCEEEE-----EeCCCeEEEEECCCCCCCcccccCCCCCCcc
Q 004745          160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLV-----GGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  233 (732)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~t-----g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  233 (732)
                                      ......-....|....|+|. ++..|+.     .+..+++++|.+.....+.+-          
T Consensus       165 ----------------~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk----------  218 (561)
T COG5354         165 ----------------EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK----------  218 (561)
T ss_pred             ----------------cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee----------
Confidence                            00000011235667777776 2233332     456788999998755433221          


Q ss_pred             ccccccccccCCCccccEEEEEEcCCCCEEEEE
Q 004745          234 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS  266 (732)
Q Consensus       234 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~  266 (732)
                       .+     .  .-   .=..+.|.+.|++|++-
T Consensus       219 -~l-----f--k~---~~~qLkW~~~g~~ll~l  240 (561)
T COG5354         219 -NL-----F--KV---SGVQLKWQVLGKYLLVL  240 (561)
T ss_pred             -ee-----E--ee---cccEEEEecCCceEEEE
Confidence             00     0  00   12357888999887654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.18  E-value=3.7e-09  Score=112.95  Aligned_cols=200  Identities=14%  Similarity=0.157  Sum_probs=127.1

Q ss_pred             CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCCCCCCCCCCCCceeeccccC
Q 004745           41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  117 (732)
Q Consensus        41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~  117 (732)
                      ..|.+||.... ....+ ..|...+.+.+|+|+  |+.|+..+.   +..|.+||+.++.           ...+..+..
T Consensus       182 ~~l~~~d~dg~-~~~~l-t~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~-----------~~~l~~~~g  246 (435)
T PRK05137        182 KRLAIMDQDGA-NVRYL-TDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQ-----------RELVGNFPG  246 (435)
T ss_pred             eEEEEECCCCC-CcEEE-ecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCc-----------EEEeecCCC
Confidence            47889997544 44445 577889999999999  577777653   4679999998643           233444566


Q ss_pred             ceeEEEEecCCCcEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004745          118 RVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  195 (732)
Q Consensus       118 ~v~~l~~~p~~~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  195 (732)
                      .+...+|+|++..++++.+.++.  |.+||+.+++..                       .+   ..+........|+|+
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~L---t~~~~~~~~~~~spD  300 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-----------------------RL---TDSPAIDTSPSYSPD  300 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-----------------------Ec---cCCCCccCceeEcCC
Confidence            77789999977556667776665  677787765421                       11   112223456799999


Q ss_pred             CCCEEEEEeC-CC--eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC---
Q 004745          196 RPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---  269 (732)
Q Consensus       196 ~~~~l~tg~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d---  269 (732)
                       ++.|+..+. +|  .|++||+..++. ..+.                   . ... .+....|+|+|++|+....+   
T Consensus       301 -G~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt-------------------~-~~~-~~~~~~~SpdG~~ia~~~~~~~~  357 (435)
T PRK05137        301 -GSQIVFESDRSGSPQLYVMNADGSNP-RRIS-------------------F-GGG-RYSTPVWSPRGDLIAFTKQGGGQ  357 (435)
T ss_pred             -CCEEEEEECCCCCCeEEEEECCCCCe-EEee-------------------c-CCC-cccCeEECCCCCEEEEEEcCCCc
Confidence             677766553 33  588888765432 1110                   0 111 25568899999999887653   


Q ss_pred             CeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004745          270 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       270 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (732)
                      ..|.+||+.++.. ..+.               .+  .......|+|||+.++
T Consensus       358 ~~i~~~d~~~~~~-~~lt---------------~~--~~~~~p~~spDG~~i~  392 (435)
T PRK05137        358 FSIGVMKPDGSGE-RILT---------------SG--FLVEGPTWAPNGRVIM  392 (435)
T ss_pred             eEEEEEECCCCce-Eecc---------------CC--CCCCCCeECCCCCEEE
Confidence            3688888765321 1110               00  1244567899999887

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=7e-09  Score=111.09  Aligned_cols=204  Identities=11%  Similarity=0.080  Sum_probs=126.0

Q ss_pred             ccEeeeccCCceeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEE-EEECCC
Q 004745           11 QERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA   86 (732)
Q Consensus        11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~-s~~~dg   86 (732)
                      ..+.+..+...+...+|+|||+.|+..+.+   ..|.+||+.+++... + ....+.+....|+|+  |+.|+ +...++
T Consensus       190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpD--G~~la~~~~~~g  265 (430)
T PRK00178        190 RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPD--GSKLAFVLSKDG  265 (430)
T ss_pred             CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCC--CCEEEEEEccCC
Confidence            345566678889999999999999876643   368999998886543 3 233445567899999  46665 555555


Q ss_pred             --cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCccc
Q 004745           87 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQEC  162 (732)
Q Consensus        87 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~  162 (732)
                        .|.+||+.++.           ...+..+........|+|++..++++...+|  .|.++|+.+++..          
T Consensus       266 ~~~Iy~~d~~~~~-----------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~----------  324 (430)
T PRK00178        266 NPEIYVMDLASRQ-----------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE----------  324 (430)
T ss_pred             CceEEEEECCCCC-----------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE----------
Confidence              57778887642           2333444455667889997644554544444  4666777655411          


Q ss_pred             ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-C--eEEEEECCCCCCCcccccCCCCCCcccccccc
Q 004745          163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-A--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  239 (732)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (732)
                                   .+.. .+  .......|+|+ ++.|+....+ +  .|.+||+.+++. ..+.               
T Consensus       325 -------------~lt~-~~--~~~~~~~~Spd-g~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt---------------  371 (430)
T PRK00178        325 -------------RVTF-VG--NYNARPRLSAD-GKTLVMVHRQDGNFHVAAQDLQRGSV-RILT---------------  371 (430)
T ss_pred             -------------Eeec-CC--CCccceEECCC-CCEEEEEEccCCceEEEEEECCCCCE-EEcc---------------
Confidence                         0000 00  12234679999 6677665543 3  588889887542 1110               


Q ss_pred             ccccCCCccccEEEEEEcCCCCEEEEEecC---CeEEEEECCC
Q 004745          240 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH  279 (732)
Q Consensus       240 ~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d---g~v~iwd~~~  279 (732)
                          ....   .....|+|+|+.|+..+.+   ..|+++++..
T Consensus       372 ----~~~~---~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        372 ----DTSL---DESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             ----CCCC---CCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence                0011   1235899999998877664   3567777754

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=6.8e-09  Score=110.63  Aligned_cols=202  Identities=11%  Similarity=0.100  Sum_probs=118.4

Q ss_pred             EeeeccCCceeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEE-EEECCCc-
Q 004745           13 RELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDAE-   87 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~-s~~~dg~-   87 (732)
                      +.+..+...+....|+|||++|+..+.+   ..|.+||+.+++... + ....+......|+|++  +.|+ +.+.++. 
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-l-t~~~g~~~~~~wSPDG--~~La~~~~~~g~~  286 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-V-TSFPGINGAPRFSPDG--KKLALVLSKDGQP  286 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-e-cCCCCCcCCeeECCCC--CEEEEEEeCCCCe
Confidence            3444556678899999999998876542   358889998876533 2 2223344578999994  6554 5566776 


Q ss_pred             -EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccce
Q 004745           88 -VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        88 -i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                       |.++|+.++.           ...+..+........|+|++..++++...++.  |.++|+.+++..            
T Consensus       287 ~Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~------------  343 (448)
T PRK04792        287 EIYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS------------  343 (448)
T ss_pred             EEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE------------
Confidence             6666776532           23344445556778999976444455444444  555666554411            


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC-CC--eEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                                 .+.. .+.  .....+|+|+ +++|+..+. ++  .|.++|+.+++.. .+.                 
T Consensus       344 -----------~Lt~-~g~--~~~~~~~SpD-G~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt-----------------  390 (448)
T PRK04792        344 -----------RLTF-EGE--QNLGGSITPD-GRSMIMVNRTNGKFNIARQDLETGAMQ-VLT-----------------  390 (448)
T ss_pred             -----------EEec-CCC--CCcCeeECCC-CCEEEEEEecCCceEEEEEECCCCCeE-Ecc-----------------
Confidence                       1110 011  1234689999 566665544 44  4555677665321 110                 


Q ss_pred             ccCCCccccEEEEEEcCCCCEEEEEecC-C--eEEEEECCC
Q 004745          242 SEHGRSSLHLTHVTFSPNGEEVLLSYSG-E--HVYLMDVNH  279 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~d-g--~v~iwd~~~  279 (732)
                        ....   .....|+|+|+.|+..+.+ |  .+++++...
T Consensus       391 --~~~~---d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G  426 (448)
T PRK04792        391 --STRL---DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG  426 (448)
T ss_pred             --CCCC---CCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence              0000   1134799999988776653 3  477777643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=8.7e-09  Score=107.14  Aligned_cols=239  Identities=14%  Similarity=0.130  Sum_probs=147.7

Q ss_pred             hhccccEeeeccCCceeEEEEcCC------C------CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCC
Q 004745            7 RRLSQERELEGHQGCVNAISWNSK------G------SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET   74 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~d------g------~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~   74 (732)
                      ++.+.++.+.-|...|+.+.|.|-      +      -+||++...|.|.|||...+..+..+ ..|..+|..++|.+..
T Consensus        43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~r  121 (1062)
T KOG1912|consen   43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPAR  121 (1062)
T ss_pred             hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeecc
Confidence            456788889999999999999872      1      26778888899999999999888888 7888999999998854


Q ss_pred             CC--CEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004745           75 SD--ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  152 (732)
Q Consensus        75 ~g--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~  152 (732)
                      +.  ..|+.-....+|.+|+..++..          +.....-.....++.+.|.+.+.+..-+..|.+.+-+.-.....
T Consensus       122 d~Srd~LlaIh~ss~lvLwntdtG~k----------~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep  191 (1062)
T KOG1912|consen  122 DDSRDVLLAIHGSSTLVLWNTDTGEK----------FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEP  191 (1062)
T ss_pred             CcchheeEEecCCcEEEEEEccCCce----------eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCC
Confidence            22  3566666778999999987532          33443334566779999988777766666788777765433321


Q ss_pred             -CCC-----CCCCcccceEEeeccCCccccccCCCCCccc--eEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccc
Q 004745          153 -PPA-----GSSHQECRNILLDLRCGAKRSLADPPKQTLS--LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  224 (732)
Q Consensus       153 -~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~  224 (732)
                       ...     ...+.+....-....++.. .-..+......  ...++|+|.-.+.++ ......+.|+|++-...+....
T Consensus       192 ~~pgk~~qI~sd~Sdl~~lere~at~ns-~ts~~~sa~fity~a~faf~p~~rn~lf-i~~prellv~dle~~~~l~vvp  269 (1062)
T KOG1912|consen  192 DVPGKEFQITSDHSDLAHLERETATGNS-TTSTPASAYFITYCAQFAFSPHWRNILF-ITFPRELLVFDLEYECCLAVVP  269 (1062)
T ss_pred             CCCceeEEEecCccchhhhhhhhhcccc-ccCCCcchhHHHHHHhhhcChhhhceEE-EEeccceEEEcchhhceeEEEE
Confidence             000     0000000000000000000 00001111111  123567887444443 4456779999998665443321


Q ss_pred             cCCCCCCccccccccccccCCCccccEEEEEEcCCC--CEEEEEecCCeEEEEECCC
Q 004745          225 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g--~~l~~~~~dg~v~iwd~~~  279 (732)
                      .                    ..+ .+.-+.+-|++  ..|++...||.+.+|--+.
T Consensus       270 i--------------------er~-~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  270 I--------------------ERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             e--------------------ccC-CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            1                    111 13345666655  5799999999999997665

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.14  E-value=2.9e-08  Score=93.04  Aligned_cols=163  Identities=20%  Similarity=0.329  Sum_probs=116.5

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeeEEEEccCC-CcCeEEEEEecCCCCCEEEE-EECCCcEEEEEcC
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGH-SANVFCTKFVPETSDELVVS-GAGDAEVRLFNLS   94 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~-~~~~~~~~~~~h-~~~V~~~~~s~~~~g~~l~s-~~~dg~i~vwd~~   94 (732)
                      ...+|.++.+.++  +|++.- .+.|+||... +.+.++.+.... ...  -++..|..+..+|+- |-.-|.|+|-|+.
T Consensus        93 f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkG--lC~~~~~~~k~~LafPg~k~GqvQi~dL~  167 (346)
T KOG2111|consen   93 FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKG--LCSLCPTSNKSLLAFPGFKTGQVQIVDLA  167 (346)
T ss_pred             eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCc--eEeecCCCCceEEEcCCCccceEEEEEhh
Confidence            4678888888765  566654 4789999987 556666663211 222  344555542233332 3356899999998


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc-EEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                      ....        .+.....+|...|.+++.+.+| .++||+|..|+ |||||..+++.+              ..++.|.
T Consensus       168 ~~~~--------~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l--------------~E~RRG~  224 (346)
T KOG2111|consen  168 STKP--------NAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLL--------------QELRRGV  224 (346)
T ss_pred             hcCc--------CCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEe--------------eeeecCC
Confidence            5321        1246788999999999999955 99999999998 789999999843              2222222


Q ss_pred             cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                               ....|++|+|+|+ ..+|++++..|+|+||.++...
T Consensus       225 ---------d~A~iy~iaFSp~-~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  225 ---------DRADIYCIAFSPN-SSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             ---------chheEEEEEeCCC-ccEEEEEcCCCeEEEEEeecCC
Confidence                     2348999999999 7899999999999999998644

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.13  E-value=2.5e-09  Score=115.10  Aligned_cols=195  Identities=10%  Similarity=0.106  Sum_probs=149.2

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEE---EEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCC
Q 004745           25 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC---TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  101 (732)
Q Consensus        25 l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~---~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~  101 (732)
                      ..+..+..+++.+..++.+.+||...+.....+.........+   +-++++.  -++++|+.-+.|.+|++.. ..   
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~--~~i~~gsv~~~iivW~~~~-dn---  166 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE--LYIASGSVFGEIIVWKPHE-DN---  166 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE--EEEEeccccccEEEEeccc-cC---
Confidence            3444456778888889999999999887777662222211222   2344552  5889999999999999882 21   


Q ss_pred             CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004745          102 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  181 (732)
Q Consensus       102 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (732)
                           . -..+.+|.+.|.++.++-+ +++++++|+|.++|+|++.+.+...                        ...-
T Consensus       167 -----~-p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~~~~------------------------~~~f  215 (967)
T KOG0974|consen  167 -----K-PIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSREVLG------------------------CTGF  215 (967)
T ss_pred             -----C-cceecccCCceEEEEEccC-CcEEEEEecCcceeeeecccccccC------------------------cccc
Confidence                 1 1268899999999999984 4999999999999999999987431                        1234


Q ss_pred             CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC
Q 004745          182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  261 (732)
Q Consensus       182 ~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~  261 (732)
                      +|...+..+.|.|.   .+++++.|-+.++|+.... .+..+                    .+|....|..++..++..
T Consensus       216 gHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~-~l~~y--------------------~~h~g~~iw~~~~~~~~~  271 (967)
T KOG0974|consen  216 GHSARVWACCFLPN---RIITVGEDCTCRVWGVNGT-QLEVY--------------------DEHSGKGIWKIAVPIGVI  271 (967)
T ss_pred             cccceeEEEEeccc---eeEEeccceEEEEEecccc-eehhh--------------------hhhhhcceeEEEEcCCce
Confidence            67889999999986   8999999999999976533 22222                    556666799999999999


Q ss_pred             EEEEEecCCeEEEEECCCC
Q 004745          262 EVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       262 ~l~~~~~dg~v~iwd~~~~  280 (732)
                      .+++++.|+.+++|++..-
T Consensus       272 ~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  272 IKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EEEeeccCcchhhhhhhcc
Confidence            9999999999999998873

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.12  E-value=4.3e-09  Score=97.32  Aligned_cols=208  Identities=13%  Similarity=0.188  Sum_probs=145.9

Q ss_pred             cCCceeEEEEcC---CCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCC---C---cCeEEEEEecCCCCCEEEEEECCCc
Q 004745           18 HQGCVNAISWNS---KGS-LLISGSDDTHINVWSYSSRKLLHSIETGH---S---ANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus        18 h~~~V~~l~~s~---dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h---~---~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      .+..+..+.|+.   +|. .|+-+-.+|.|.++....-.....+ .+-   .   ....++.|++.  +..++++..+|.
T Consensus        68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-~~ls~~ki~~~~~lslD~~~~--~~~i~vs~s~G~  144 (339)
T KOG0280|consen   68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-RGLSSKKISVVEALSLDISTS--GTKIFVSDSRGS  144 (339)
T ss_pred             cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-cccchhhhhheeeeEEEeecc--CceEEEEcCCCc
Confidence            356677788873   555 5666777899999976654444333 221   1   12457788887  477999888999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      +.+-+......        +.++.++.|...+.-..|+..+++++.+|+.|+.+..||++.++..             + 
T Consensus       145 ~~~v~~t~~~l--------e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-------------i-  202 (339)
T KOG0280|consen  145 ISGVYETEMVL--------EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-------------I-  202 (339)
T ss_pred             EEEEecceeee--------eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-------------e-
Confidence            88555443221        3356889999999999999988899999999999999999954421             1 


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCccccccccccccCCC
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                               ......|...|.+|.-+|..+.++++|+.|-.|++||.|+ ++++..                      +.
T Consensus       203 ---------~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~----------------------~~  251 (339)
T KOG0280|consen  203 ---------WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK----------------------AK  251 (339)
T ss_pred             ---------eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc----------------------Cc
Confidence                     1223457778999999988789999999999999999995 444332                      11


Q ss_pred             ccccEEEEEEcCCCC-EEEEEecCCeEEEEECCCCC
Q 004745          247 SSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       247 ~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~~~  281 (732)
                      .++.|+.+.++|.-. .|++++.-+-.+|-+.+...
T Consensus       252 v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~  287 (339)
T KOG0280|consen  252 VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV  287 (339)
T ss_pred             cccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence            223599999999543 34444555556777766643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=3.8e-09  Score=112.70  Aligned_cols=177  Identities=10%  Similarity=0.079  Sum_probs=112.6

Q ss_pred             CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCCCCCCCCCCCCceeeccccC
Q 004745           41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  117 (732)
Q Consensus        41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~  117 (732)
                      ..|.+||.... ....+ ..+...+.+.+|+|+  |+.|+..+.+   ..|.+||+.++..           ..+.....
T Consensus       184 ~~l~i~D~~g~-~~~~l-t~~~~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~~-----------~~l~~~~g  248 (433)
T PRK04922        184 YALQVADSDGY-NPQTI-LRSAEPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQR-----------ELVASFRG  248 (433)
T ss_pred             EEEEEECCCCC-CceEe-ecCCCccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCCE-----------EEeccCCC
Confidence            46899997544 44445 467778999999999  5788877643   4699999976432           22223334


Q ss_pred             ceeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004745          118 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  195 (732)
Q Consensus       118 ~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  195 (732)
                      .....+|+|++..++++.+.+|  .|++||+.+++..                       .+.   .+.......+|+|+
T Consensus       249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-----------------------~lt---~~~~~~~~~~~spD  302 (433)
T PRK04922        249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-----------------------RLT---NHFGIDTEPTWAPD  302 (433)
T ss_pred             CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-----------------------ECc---cCCCCccceEECCC
Confidence            4557899997755656666666  4889998776521                       111   11123456789999


Q ss_pred             CCCEEEEEe-CCCe--EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCC--
Q 004745          196 RPHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--  270 (732)
Q Consensus       196 ~~~~l~tg~-~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg--  270 (732)
                       ++.|+..+ .+|.  |+++|+.+++.. .+.           +       .+.   .....+|+|+|++|+..+.++  
T Consensus       303 -G~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt-----------~-------~g~---~~~~~~~SpDG~~Ia~~~~~~~~  359 (433)
T PRK04922        303 -GKSIYFTSDRGGRPQIYRVAASGGSAE-RLT-----------F-------QGN---YNARASVSPDGKKIAMVHGSGGQ  359 (433)
T ss_pred             -CCEEEEEECCCCCceEEEEECCCCCeE-Eee-----------c-------CCC---CccCEEECCCCCEEEEEECCCCc
Confidence             66666655 3444  666676654311 110           0       111   234689999999998876543  


Q ss_pred             -eEEEEECCCCC
Q 004745          271 -HVYLMDVNHAG  281 (732)
Q Consensus       271 -~v~iwd~~~~~  281 (732)
                       .|++||+.+++
T Consensus       360 ~~I~v~d~~~g~  371 (433)
T PRK04922        360 YRIAVMDLSTGS  371 (433)
T ss_pred             eeEEEEECCCCC
Confidence             69999998754

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.10  E-value=2.4e-09  Score=98.98  Aligned_cols=207  Identities=14%  Similarity=0.027  Sum_probs=141.7

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEE--EEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004745           22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR   99 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~--~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~   99 (732)
                      ..++.|++-+..++++..+|.+.+-+...+....  .. +.|+..+.-.+|+... .+++++|+.|+.+..||++.+.. 
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~-pnlvytGgDD~~l~~~D~R~p~~-  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKE-PNLVYTGGDDGSLSCWDIRIPKT-  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCC-CceEEecCCCceEEEEEecCCcc-
Confidence            3467888989999999999999866655443333  55 7999999999999876 48999999999999999995431 


Q ss_pred             CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004745          100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  179 (732)
Q Consensus       100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (732)
                      .       .-+..+-|...|.+|.-+|..+.+|++|+.|..|++||.+....+..                         
T Consensus       201 ~-------i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~-------------------------  248 (339)
T KOG0280|consen  201 F-------IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF-------------------------  248 (339)
T ss_pred             e-------eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc-------------------------
Confidence            1       12235668999999999998889999999999999999996543211                         


Q ss_pred             CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC
Q 004745          180 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  259 (732)
Q Consensus       180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~  259 (732)
                      .....+.|..+.++|.....++.++..+-.+|-+..........               .......|.. -...-.|...
T Consensus       249 ~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~---------------~~~s~~~hdS-l~YG~DWd~~  312 (339)
T KOG0280|consen  249 KAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQI---------------VLPSDKIHDS-LCYGGDWDSK  312 (339)
T ss_pred             cCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchhe---------------eeeccccccc-eeeccccccc
Confidence            11122578888888875445666666666788877654321000               0000023333 2555566444


Q ss_pred             CCEEEEEec-CCeEE-EEECCC
Q 004745          260 GEEVLLSYS-GEHVY-LMDVNH  279 (732)
Q Consensus       260 g~~l~~~~~-dg~v~-iwd~~~  279 (732)
                      ...|++++. |..++ +|-.-+
T Consensus       313 ~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  313 DSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             cceeeeeeccccceeeeeeecc
Confidence            456777654 66644 775544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=5.3e-09  Score=111.18  Aligned_cols=200  Identities=11%  Similarity=0.067  Sum_probs=120.7

Q ss_pred             CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCCCCCCCCCCCCceeeccccC
Q 004745           41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  117 (732)
Q Consensus        41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~  117 (732)
                      ..|.+||.. +.....+ ..+...+.+.+|+|+  |+.|+..+.+   ..|.+||+.++..           ..+.....
T Consensus       176 ~~L~~~D~d-G~~~~~l-~~~~~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~~-----------~~l~~~~g  240 (427)
T PRK02889        176 YQLQISDAD-GQNAQSA-LSSPEPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGRR-----------RVVANFKG  240 (427)
T ss_pred             cEEEEECCC-CCCceEe-ccCCCCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCCE-----------EEeecCCC
Confidence            457777764 4444445 467788999999999  5777776643   3599999986432           22332344


Q ss_pred             ceeEEEEecCCCcEEEEEeCCCcEEEEECC--CCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004745          118 RVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  195 (732)
Q Consensus       118 ~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  195 (732)
                      .+...+|+|++..++++.+.+|...+|.+.  .+..                       ..+.   .+........|+|+
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-----------------------~~lt---~~~~~~~~~~wSpD  294 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-----------------------RRLT---QSSGIDTEPFFSPD  294 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-----------------------EECC---CCCCCCcCeEEcCC
Confidence            566889999775555677888877776553  2221                       0111   11223456789999


Q ss_pred             CCCEEEEEe-CCCeEEEEECC--CCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCC--
Q 004745          196 RPHLLLVGG-SDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--  270 (732)
Q Consensus       196 ~~~~l~tg~-~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg--  270 (732)
                       ++.|+..+ .++...||.+.  +++. ..+           .+       .+.   .....+|+|+|++|+..+.++  
T Consensus       295 -G~~l~f~s~~~g~~~Iy~~~~~~g~~-~~l-----------t~-------~g~---~~~~~~~SpDG~~Ia~~s~~~g~  351 (427)
T PRK02889        295 -GRSIYFTSDRGGAPQIYRMPASGGAA-QRV-----------TF-------TGS---YNTSPRISPDGKLLAYISRVGGA  351 (427)
T ss_pred             -CCEEEEEecCCCCcEEEEEECCCCce-EEE-----------ec-------CCC---CcCceEECCCCCEEEEEEccCCc
Confidence             66666544 35666666553  3221 110           00       111   134578999999998877654  


Q ss_pred             -eEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004745          271 -HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       271 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (732)
                       .|++||+.+++..... . .                .......|+|||+.++
T Consensus       352 ~~I~v~d~~~g~~~~lt-~-~----------------~~~~~p~~spdg~~l~  386 (427)
T PRK02889        352 FKLYVQDLATGQVTALT-D-T----------------TRDESPSFAPNGRYIL  386 (427)
T ss_pred             EEEEEEECCCCCeEEcc-C-C----------------CCccCceECCCCCEEE
Confidence             6999999875422111 0 0                0123457899999887

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.08  E-value=5.7e-10  Score=125.60  Aligned_cols=195  Identities=14%  Similarity=0.211  Sum_probs=158.5

Q ss_pred             eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004745           15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS   94 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~   94 (732)
                      ++-|-..|.++.=+|...+.+||+.||.|++|....++.+..+...-...|+.+.|+.+  |+.+..+..||.+.+|-..
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ--GNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc--CCceeeeccCCceeecccC
Confidence            34456788889889988999999999999999999999988887666689999999998  5888889999999999887


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe---CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      .           ++....++|......+.|-.   ..+++++   .++.+.+||..-....                   
T Consensus      2282 p-----------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~------------------- 2328 (2439)
T KOG1064|consen 2282 P-----------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMN------------------- 2328 (2439)
T ss_pred             C-----------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCccc-------------------
Confidence            2           45788899999999999975   5677764   5678999997554321                   


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  251 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (732)
                         ..+  +..|...++++++.|. ..+|++|+.+|.|++||++..+.++.++                          .
T Consensus      2329 ---s~v--~~~H~~gaT~l~~~P~-~qllisggr~G~v~l~D~rqrql~h~~~--------------------------~ 2376 (2439)
T KOG1064|consen 2329 ---SLV--HTCHDGGATVLAYAPK-HQLLISGGRKGEVCLFDIRQRQLRHTFQ--------------------------A 2376 (2439)
T ss_pred             ---cee--eeecCCCceEEEEcCc-ceEEEecCCcCcEEEeehHHHHHHHHhh--------------------------h
Confidence               011  1457778999999998 7899999999999999999876554431                          1


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          252 THVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       252 ~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                          ++ ...++++|+..|.++||++....
T Consensus      2377 ----~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             ----hh-hhheeeccCcccceEEEEccccc
Confidence                34 55689999999999999998853

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.06  E-value=3.4e-09  Score=106.57  Aligned_cols=200  Identities=15%  Similarity=0.220  Sum_probs=142.1

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCC
Q 004745           24 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  102 (732)
Q Consensus        24 ~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~  102 (732)
                      .|+++. .-.+++.| ....|+-.+++.|+.+.-+ ....+.++++..++-.  .+|++|+.+|.|..||.+..+.... 
T Consensus       138 Dm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~-  212 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPF-ETDSGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGT-  212 (703)
T ss_pred             cccccCCCccEEEee-cCcceEEEEcccccccccc-ccccccceeeeecCcc--ceEEecccCceEEEecchhhhhhee-
Confidence            444543 33344444 4456888999999998888 5666899999999984  7899999999999999997543211 


Q ss_pred             CCCCCCceeecccc-----CceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004745          103 DNAITPSALYQCHT-----RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  177 (732)
Q Consensus       103 ~~~~~~~~~~~~h~-----~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (732)
                         .........|.     ..|+++.|.-+ +-.++.|..+|.+.|||+++.+++                        +
T Consensus       213 ---l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~pl------------------------~  264 (703)
T KOG2321|consen  213 ---LDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASKPL------------------------L  264 (703)
T ss_pred             ---eecccccCCCccccccCcceEEEecCC-ceeEEeeccCCcEEEEEcccCCce------------------------e
Confidence               01111122233     34999999874 588999999999999999998754                        1


Q ss_pred             cCCCCCccceEEEEecCCCC-CEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004745          178 ADPPKQTLSLKSCDISSTRP-HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  256 (732)
Q Consensus       178 ~~~~~~~~~v~~i~~~~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  256 (732)
                      ..-.+...+|..+.|.+.+. ..+++ .....++|||-.+++++..+.                      ....++.+++
T Consensus       265 ~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiE----------------------pt~~lND~C~  321 (703)
T KOG2321|consen  265 VKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIE----------------------PTSDLNDFCF  321 (703)
T ss_pred             ecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecc----------------------ccCCcCceee
Confidence            12223445788888876533 34444 445789999999998765441                      1224889999


Q ss_pred             cCCCCEEEEEecCCeEEEEECCC
Q 004745          257 SPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       257 sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      -|++-+++++..++.+..|=+..
T Consensus       322 ~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  322 VPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             ecCCceEEEecCCCcceeEEccc
Confidence            99999999999988877776555

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.06  E-value=2.9e-07  Score=95.03  Aligned_cols=208  Identities=14%  Similarity=0.127  Sum_probs=119.9

Q ss_pred             EEEEeCC----CcEEEEeC--CCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC----CCcEEEEEcCCCCCCCCCC
Q 004745           34 LISGSDD----THINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG----DAEVRLFNLSRFSGRGLDD  103 (732)
Q Consensus        34 lasg~~d----g~i~vWd~--~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~----dg~i~vwd~~~~~~~~~~~  103 (732)
                      ++.|+..    +.|.+|++  .+++....-...-......++++|+  +++|++...    ++.|..|++....+..   
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~--~~~LY~~~e~~~~~g~v~~~~i~~~~g~L---   76 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPD--GRRLYVVNEGSGDSGGVSSYRIDPDTGTL---   76 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TT--SSEEEEEETTSSTTTEEEEEEEETTTTEE---
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeC--CCEEEEEEccccCCCCEEEEEECCCccee---
Confidence            4556655    68999987  4454332211123455678999998  488888876    5689999887532221   


Q ss_pred             CCCCCceeeccccCceeEEEEecCCCcEEEEE-eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCC
Q 004745          104 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  182 (732)
Q Consensus       104 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (732)
                         ..+............++++|++ ++|+++ -.+|.|.++++.....+        .....++... +.  .......
T Consensus        77 ---~~~~~~~~~g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l--------~~~~~~~~~~-g~--g~~~~rq  141 (345)
T PF10282_consen   77 ---TLLNSVPSGGSSPCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSL--------GEVVQTVRHE-GS--GPNPDRQ  141 (345)
T ss_dssp             ---EEEEEEEESSSCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEE--------EEEEEEEESE-EE--ESSTTTT
T ss_pred             ---EEeeeeccCCCCcEEEEEecCC-CEEEEEEccCCeEEEEEccCCccc--------ceeeeecccC-CC--CCccccc
Confidence               2233333234566789999966 555555 46899999999874311        0000011000 00  0000011


Q ss_pred             CccceEEEEecCCCCCEEEEEe-CCCeEEEEECCCCCC-CcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC
Q 004745          183 QTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  260 (732)
Q Consensus       183 ~~~~v~~i~~~~~~~~~l~tg~-~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g  260 (732)
                      ......++.|+|+ ++++++.. ....|++|++..... +...          ..+       ....+.....++|+|++
T Consensus       142 ~~~h~H~v~~~pd-g~~v~v~dlG~D~v~~~~~~~~~~~l~~~----------~~~-------~~~~G~GPRh~~f~pdg  203 (345)
T PF10282_consen  142 EGPHPHQVVFSPD-GRFVYVPDLGADRVYVYDIDDDTGKLTPV----------DSI-------KVPPGSGPRHLAFSPDG  203 (345)
T ss_dssp             SSTCEEEEEE-TT-SSEEEEEETTTTEEEEEEE-TTS-TEEEE----------EEE-------ECSTTSSEEEEEE-TTS
T ss_pred             ccccceeEEECCC-CCEEEEEecCCCEEEEEEEeCCCceEEEe----------ecc-------ccccCCCCcEEEEcCCc
Confidence            2335688999999 56666553 456899999976541 1110          000       01112247889999999


Q ss_pred             CEEEEEec-CCeEEEEECCC
Q 004745          261 EEVLLSYS-GEHVYLMDVNH  279 (732)
Q Consensus       261 ~~l~~~~~-dg~v~iwd~~~  279 (732)
                      +++++... ++.|.+|++..
T Consensus       204 ~~~Yv~~e~s~~v~v~~~~~  223 (345)
T PF10282_consen  204 KYAYVVNELSNTVSVFDYDP  223 (345)
T ss_dssp             SEEEEEETTTTEEEEEEEET
T ss_pred             CEEEEecCCCCcEEEEeecc
Confidence            99988876 78999998874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=8.4e-08  Score=101.48  Aligned_cols=230  Identities=13%  Similarity=0.086  Sum_probs=127.8

Q ss_pred             EeeeccCCceeEEEEcCCCCEEE---EEeCC--CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-CC
Q 004745           13 RELEGHQGCVNAISWNSKGSLLI---SGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA   86 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~dg~~la---sg~~d--g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg   86 (732)
                      +.|......+..-+|+|||+.++   +...+  ..|.+.++.+++.....  ...+.....+|+|+  |+.|+..+. +|
T Consensus       178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPD--G~~Laf~s~~~g  253 (428)
T PRK01029        178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPR--KKLLAFISDRYG  253 (428)
T ss_pred             eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee--cCCCCccceEECCC--CCEEEEEECCCC
Confidence            34544556667789999997522   44333  35777788877644332  34455567899999  467665542 33


Q ss_pred             ----cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEEC--CCCCCCCCCCCCCc
Q 004745           87 ----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF--RQGSSCPPAGSSHQ  160 (732)
Q Consensus        87 ----~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~--~~~~~~~~~~~~~~  160 (732)
                          .+.+|++..+...       .+......+........|+|++..++++...+|...+|.+  ......        
T Consensus       254 ~~di~~~~~~~~~g~~g-------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~--------  318 (428)
T PRK01029        254 NPDLFIQSFSLETGAIG-------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS--------  318 (428)
T ss_pred             CcceeEEEeecccCCCC-------cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc--------
Confidence                2444666542111       1122222223345678999976444444445666555543  221100        


Q ss_pred             ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC---CeEEEEECCCCCCCcccccCCCCCCcccccc
Q 004745          161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  237 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  237 (732)
                                   ...+.   .....+....|+|+ |+.|+..+.+   ..|.+||+.+++... +.             
T Consensus       319 -------------~~~lt---~~~~~~~~p~wSPD-G~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt-------------  367 (428)
T PRK01029        319 -------------PRLLT---KKYRNSSCPAWSPD-GKKIAFCSVIKGVRQICVYDLATGRDYQ-LT-------------  367 (428)
T ss_pred             -------------eEEec---cCCCCccceeECCC-CCEEEEEEcCCCCcEEEEEECCCCCeEE-cc-------------
Confidence                         00011   11124567889999 6777665443   469999998765321 10             


Q ss_pred             ccccccCCCccccEEEEEEcCCCCEEEEEec---CCeEEEEECCCCCCcceeeecCCCCceeeeccC
Q 004745          238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  301 (732)
Q Consensus       238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  301 (732)
                            .+  ...+....|+|||+.|+..+.   ...|+++|+.+++.... ..........+|+|.
T Consensus       368 ------~~--~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L-t~~~g~~~~p~Ws~~  425 (428)
T PRK01029        368 ------TS--PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI-VIGSGEKRFPSWGAF  425 (428)
T ss_pred             ------CC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCcccCceecCC
Confidence                  11  112566899999998876543   35788999987553332 222233344555543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.03  E-value=8.5e-09  Score=95.86  Aligned_cols=240  Identities=13%  Similarity=0.194  Sum_probs=149.9

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-eE----EEEccCCC------------cCeEEEEEecCCCCCEEEE
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LL----HSIETGHS------------ANVFCTKFVPETSDELVVS   81 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~-~~----~~~~~~h~------------~~V~~~~~s~~~~g~~l~s   81 (732)
                      .+-|+++.|...|.+|++|...|.|.++.-.... |.    ..| ++|.            ..|..+.|..+..-..++.
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            5679999999999999999999999999754322 21    223 3443            5588899987653456666


Q ss_pred             EECCCcEEEEEcCCCCCCCCCCC--------------------------C------CCCceee-ccccCceeEEEEecCC
Q 004745           82 GAGDAEVRLFNLSRFSGRGLDDN--------------------------A------ITPSALY-QCHTRRVKKLAVEVGN  128 (732)
Q Consensus        82 ~~~dg~i~vwd~~~~~~~~~~~~--------------------------~------~~~~~~~-~~h~~~v~~l~~~p~~  128 (732)
                      .+.|.+|++|.+.....+....+                          .      ..+.+.. ..|.-.|+++.|..+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            77899999999875422111000                          0      0111122 5688889999999855


Q ss_pred             CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCe
Q 004745          129 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF  208 (732)
Q Consensus       129 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~  208 (732)
                       ..+++ +.|-.|.+|++.-....           -.+++.+...-..      -...|++..|+|...+.+.-.++.|.
T Consensus       185 -et~lS-aDdLrINLWnl~i~D~s-----------FnIVDiKP~nmee------LteVItSaeFhp~~cn~fmYSsSkG~  245 (460)
T COG5170         185 -ETLLS-ADDLRINLWNLEIIDGS-----------FNIVDIKPHNMEE------LTEVITSAEFHPEMCNVFMYSSSKGE  245 (460)
T ss_pred             -heeee-ccceeeeeccccccCCc-----------eEEEeccCccHHH------HHHHHhhcccCHhHcceEEEecCCCc
Confidence             55544 56778999998765422           2233333221111      12367889999988888888899999


Q ss_pred             EEEEECCCCCCCcccccCCCCCCccccccccccc-cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcce
Q 004745          209 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS-EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM  285 (732)
Q Consensus       209 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~  285 (732)
                      |++-|++....-......     ...+..+.... -.+- -..|..+.|+++|+++++-.. -+|.|||++..+.+..
T Consensus       246 Ikl~DlRq~alcdn~~kl-----fe~~~D~v~~~ff~ei-vsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik  316 (460)
T COG5170         246 IKLNDLRQSALCDNSKKL-----FELTIDGVDVDFFEEI-VSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK  316 (460)
T ss_pred             EEehhhhhhhhccCchhh-----hhhccCcccchhHHHH-hhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence            999999854311000000     00000000000 0011 124889999999998876544 5999999998765443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.00  E-value=3.1e-09  Score=100.18  Aligned_cols=241  Identities=17%  Similarity=0.240  Sum_probs=150.2

Q ss_pred             CCceeEEEEcCCCC--EEEEEeCCCcEEEEeCCCCe-----------------------------------eEEEEccCC
Q 004745           19 QGCVNAISWNSKGS--LLISGSDDTHINVWSYSSRK-----------------------------------LLHSIETGH   61 (732)
Q Consensus        19 ~~~V~~l~~s~dg~--~lasg~~dg~i~vWd~~~~~-----------------------------------~~~~~~~~h   61 (732)
                      ...|+.+.|.++++  .++....|.+|++|.+....                                   +.+.+...|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            35789999998764  55556689999999875311                                   122223478


Q ss_pred             CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcE
Q 004745           62 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL  141 (732)
Q Consensus        62 ~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  141 (732)
                      +--|++++++.+.  ..++++ .|=+|.+|+++...+ .......+| ..+...+..|++..|+|...+.|+-.+..|+|
T Consensus       164 tyhiNSIS~NsD~--Et~lSA-DdLRINLWnlei~d~-sFnIVDIKP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI  238 (433)
T KOG1354|consen  164 TYHINSISVNSDK--ETFLSA-DDLRINLWNLEIIDQ-SFNIVDIKP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTI  238 (433)
T ss_pred             eeEeeeeeecCcc--ceEeec-cceeeeeccccccCC-ceeEEEccc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence            8889999999984  677765 588899999986432 111111111 22333456799999999888899988999999


Q ss_pred             EEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCC
Q 004745          142 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPL  220 (732)
Q Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~  220 (732)
                      ++-|++....+-.....       +-....+.  ...+...-...|..+.|++. |+++++-.. -+|++||+.. .+++
T Consensus       239 rLcDmR~~aLCd~hsKl-------fEepedp~--~rsffseiIsSISDvKFs~s-GryilsRDy-ltvk~wD~nme~~pv  307 (433)
T KOG1354|consen  239 RLCDMRQSALCDAHSKL-------FEEPEDPS--SRSFFSEIISSISDVKFSHS-GRYILSRDY-LTVKLWDLNMEAKPV  307 (433)
T ss_pred             EEeechhhhhhcchhhh-------hccccCCc--chhhHHHHhhhhhceEEccC-CcEEEEecc-ceeEEEeccccCCcc
Confidence            99999976654111000       00000000  01111122347889999998 788887643 6899999954 4444


Q ss_pred             cccccCCCCCCcccccccccccc--CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCc
Q 004745          221 TSCQKRMSPPPCVNYFCPMHLSE--HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  283 (732)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~  283 (732)
                      .+.+...        +....+..  ....-..-..++|+-++.++++|+..+.+++|++..+...
T Consensus       308 ~t~~vh~--------~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~  364 (433)
T KOG1354|consen  308 ETYPVHE--------YLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE  364 (433)
T ss_pred             eEEeehH--------hHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence            4332111        00000000  0011011345789999999999999999999997765543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.99  E-value=1.1e-09  Score=72.43  Aligned_cols=39  Identities=23%  Similarity=0.570  Sum_probs=37.7

Q ss_pred             ccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEc
Q 004745          628 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT  666 (732)
Q Consensus       628 g~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~  666 (732)
                      |+++.+|.+|.+.|++|+|+|++.+|+|+|.|++|+|||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            578999999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.99  E-value=5.6e-08  Score=104.03  Aligned_cols=176  Identities=13%  Similarity=0.099  Sum_probs=111.7

Q ss_pred             CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCCCCCCCCCCCCceeeccccC
Q 004745           41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  117 (732)
Q Consensus        41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~  117 (732)
                      ..|.++|..... ...+ ..+...+...+|+|+  |++|+.+..+   ..|++||+.++.           ...+..+..
T Consensus       170 ~~l~~~d~~g~~-~~~l-~~~~~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~-----------~~~~~~~~~  234 (417)
T TIGR02800       170 YELQVADYDGAN-PQTI-TRSREPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQ-----------REKVASFPG  234 (417)
T ss_pred             ceEEEEcCCCCC-CEEe-ecCCCceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence            358888875443 3444 356667899999999  5888777643   479999998642           222333455


Q ss_pred             ceeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004745          118 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  195 (732)
Q Consensus       118 ~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  195 (732)
                      .+.+++|+|++..++++.+.++  .|.+||+.++...                       .+.   .+........|+|+
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-----------------------~l~---~~~~~~~~~~~s~d  288 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-----------------------RLT---NGPGIDTEPSWSPD  288 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-----------------------ECC---CCCCCCCCEEECCC
Confidence            6677899997755555665554  4888888765421                       010   11112345679998


Q ss_pred             CCCEEEEEeC-CC--eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCC--
Q 004745          196 RPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--  270 (732)
Q Consensus       196 ~~~~l~tg~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg--  270 (732)
                       ++.|+..+. ++  .|+++|+.+.+.. .+                    ..+.. .+....|+|+|++|+.++.++  
T Consensus       289 -g~~l~~~s~~~g~~~iy~~d~~~~~~~-~l--------------------~~~~~-~~~~~~~spdg~~i~~~~~~~~~  345 (417)
T TIGR02800       289 -GKSIAFTSDRGGSPQIYMMDADGGEVR-RL--------------------TFRGG-YNASPSWSPDGDLIAFVHREGGG  345 (417)
T ss_pred             -CCEEEEEECCCCCceEEEEECCCCCEE-Ee--------------------ecCCC-CccCeEECCCCCEEEEEEccCCc
Confidence             666665543 33  5777887654311 11                    00111 356789999999999888875  


Q ss_pred             -eEEEEECCCC
Q 004745          271 -HVYLMDVNHA  280 (732)
Q Consensus       271 -~v~iwd~~~~  280 (732)
                       .|.+||+.++
T Consensus       346 ~~i~~~d~~~~  356 (417)
T TIGR02800       346 FNIAVMDLDGG  356 (417)
T ss_pred             eEEEEEeCCCC
Confidence             7889998874

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=2.6e-07  Score=92.93  Aligned_cols=112  Identities=11%  Similarity=0.163  Sum_probs=79.6

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-----------CCcEEEE
Q 004745           23 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-----------DAEVRLF   91 (732)
Q Consensus        23 ~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-----------dg~i~vw   91 (732)
                      +.+.|||-|.||+|--.-| |.+|--.+...+++|  .|.+ |.-+.|||..  +||+|-+.           ...++||
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp~-Vq~idfSP~E--kYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHPG-VQFIDFSPNE--KYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCCC-ceeeecCCcc--ceEEEecCCccccCcccCCCceEEEE
Confidence            5689999999999987755 899987777788888  5664 7899999995  89998754           1469999


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  149 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~  149 (732)
                      |+.++.....       ...+++....-.-+.|+.++ +++|.-.. ..|.||+..+.
T Consensus       288 DI~tG~lkrs-------F~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf  336 (698)
T KOG2314|consen  288 DIATGLLKRS-------FPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSF  336 (698)
T ss_pred             Eccccchhcc-------eeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCce
Confidence            9998643211       11112212222335788854 88877666 47999987664

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=1.3e-07  Score=95.48  Aligned_cols=112  Identities=14%  Similarity=0.252  Sum_probs=77.1

Q ss_pred             ceeEEEEcCCCCEEEEEe-----CC-----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004745           21 CVNAISWNSKGSLLISGS-----DD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL   90 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~-----~d-----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v   90 (732)
                      .++++.|+|-|.+|.|--     .+     ..+++|+++++.....+....... .+..|+++   ..|+.=-..+.+.+
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~d---Esl~arlv~nev~f  150 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSID---ESLAARLVSNEVQF  150 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccc---hhhhhhhhcceEEE
Confidence            778899999998887641     22     357799999976666664445554 58999998   45555555678999


Q ss_pred             EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC-CCcEEEE-----EeCCCcEEEEECC
Q 004745           91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWS-----ASEDGTLRQHDFR  147 (732)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s-----~s~dg~i~vwd~~  147 (732)
                      |++.....           ..-+-|...|+.+.++|. ....+|+     .|.-..|++|...
T Consensus       151 ~~~~~f~~-----------~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~  202 (566)
T KOG2315|consen  151 YDLGSFKT-----------IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYP  202 (566)
T ss_pred             EecCCccc-----------eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccc
Confidence            99986332           222235778999999995 2344443     3455679999876

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=2.7e-08  Score=103.65  Aligned_cols=247  Identities=17%  Similarity=0.168  Sum_probs=157.2

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCC----------CCCEEEEEECCCc
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET----------SDELVVSGAGDAE   87 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~----------~g~~l~s~~~dg~   87 (732)
                      |...-.++.|+|.| ++|-|+. ..|.|-|..+-+.+..+ ..|...|+.+.|.|..          ..-+|+++...|.
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsi-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr   90 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR   90 (1062)
T ss_pred             CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhcc-ccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence            34446788999877 5776664 57999999999999999 7899999999998842          1236788888999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC--C-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG--N-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      |.+||......          +..+..|.+++..+.|-|.  . ..+|+......+|.+|+..+++.             
T Consensus        91 Iil~d~~~~s~----------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-------------  147 (1062)
T KOG1912|consen   91 IILVDFVLASV----------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-------------  147 (1062)
T ss_pred             EEEEEehhhhh----------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-------------
Confidence            99999987432          4556778889999998763  2 25677777778999999999873             


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC----Ccccc--cCCCCC-Ccccccc
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP----LTSCQ--KRMSPP-PCVNYFC  237 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~----~~~~~--~~~~~~-~~~~~~~  237 (732)
                       +|....           ......|+.+.|-+.+.+..-+..|.|-+-+.-...+    .+.++  .....+ .-.+...
T Consensus       148 -~Wk~~y-----------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~a  215 (1062)
T KOG1912|consen  148 -FWKYDY-----------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETA  215 (1062)
T ss_pred             -eecccc-----------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhh
Confidence             333222           2225677889998777777777778777776533221    11111  000000 0000000


Q ss_pred             --ccccccCCCccc--cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCC
Q 004745          238 --PMHLSEHGRSSL--HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  302 (732)
Q Consensus       238 --~~~~~~~~~~~~--~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (732)
                        ............  ....++|+|.-+.++-...-..+.|+|++-..............+.+.+.|..
T Consensus       216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~  284 (1062)
T KOG1912|consen  216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDP  284 (1062)
T ss_pred             ccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCC
Confidence              000000000000  02346788877767777778899999998755555555455555556666653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.97  E-value=7.5e-09  Score=111.60  Aligned_cols=151  Identities=17%  Similarity=0.142  Sum_probs=118.7

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCC
Q 004745           26 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA  105 (732)
Q Consensus        26 ~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  105 (732)
                      -++++.-++++|+.-+.|.+|++...+....+ .+|++.|..+.|+-+  |.+++++|.|.++++|++++...       
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l-~GHeG~iF~i~~s~d--g~~i~s~SdDRsiRlW~i~s~~~-------  209 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRL-KGHEGSIFSIVTSLD--GRYIASVSDDRSIRLWPIDSREV-------  209 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCCccee-cccCCceEEEEEccC--CcEEEEEecCcceeeeecccccc-------
Confidence            34566668999999999999998743333345 799999999999999  69999999999999999997432       


Q ss_pred             CCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC-c
Q 004745          106 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-T  184 (732)
Q Consensus       106 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  184 (732)
                        ......+|+..|..+.|.|.   .++|++.|.+.++|+....+..                          ....| .
T Consensus       210 --~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l~--------------------------~y~~h~g  258 (967)
T KOG0974|consen  210 --LGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQLE--------------------------VYDEHSG  258 (967)
T ss_pred             --cCcccccccceeEEEEeccc---eeEEeccceEEEEEecccceeh--------------------------hhhhhhh
Confidence              12466789999999999983   8999999999999965443311                          11111 2


Q ss_pred             cceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          185 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       185 ~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      ..+..++..+. ...++|++.|+.+++||+....
T Consensus       259 ~~iw~~~~~~~-~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  259 KGIWKIAVPIG-VIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             cceeEEEEcCC-ceEEEeeccCcchhhhhhhccc
Confidence            26788888887 6799999999999999986543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.96  E-value=1.1e-08  Score=96.60  Aligned_cols=246  Identities=17%  Similarity=0.242  Sum_probs=149.3

Q ss_pred             hhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeC-C----------------------------------
Q 004745            5 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-S----------------------------------   49 (732)
Q Consensus         5 ~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~-~----------------------------------   49 (732)
                      -..++.+.+....|...|..+-|+...+++++.+.|..+. |.. +                                  
T Consensus       100 dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt  178 (404)
T KOG1409|consen  100 DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQIT  178 (404)
T ss_pred             hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceE
Confidence            3456677778888999999999998888888888775432 321 1                                  


Q ss_pred             -------CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEE
Q 004745           50 -------SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL  122 (732)
Q Consensus        50 -------~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  122 (732)
                             .-..+.++ .+|.+.+.+++|.|.  ..+|++|..|..+.+||+....+.         ...+.+|.+.|..+
T Consensus       179 ~lr~~~~~~~~i~~~-~~h~~~~~~l~Wd~~--~~~LfSg~~d~~vi~wdigg~~g~---------~~el~gh~~kV~~l  246 (404)
T KOG1409|consen  179 MLKLEQNGCQLITTF-NGHTGEVTCLKWDPG--QRLLFSGASDHSVIMWDIGGRKGT---------AYELQGHNDKVQAL  246 (404)
T ss_pred             EEEEeecCCceEEEE-cCcccceEEEEEcCC--CcEEEeccccCceEEEeccCCcce---------eeeeccchhhhhhh
Confidence                   11233444 689999999999998  489999999999999999865432         56788999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc---cce-EEeeccCCccccccC----CCCCccceEEEEecC
Q 004745          123 AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE---CRN-ILLDLRCGAKRSLAD----PPKQTLSLKSCDISS  194 (732)
Q Consensus       123 ~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~----~~~~~~~v~~i~~~~  194 (732)
                      ...+ -.+.+.+++.||.|.+|++.........-.....   |.. .+|.+..........    +-.+.+...+...+.
T Consensus       247 ~~~~-~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s  325 (404)
T KOG1409|consen  247 SYAQ-HTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS  325 (404)
T ss_pred             hhhh-hheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccccc
Confidence            8877 4478889999999999998765432111111111   110 011111000000000    000111112222222


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEE
Q 004745          195 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL  274 (732)
Q Consensus       195 ~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~i  274 (732)
                      . .....+-+..-.+|+-|.-.......-+      ..+.      .....|++  |+.+.+..+-..|++++.|..|+|
T Consensus       326 ~-~~~~p~mg~e~~vR~~~~c~~~i~~~~~------t~LA------~phei~tg--ItamhlqetlglLvTsG~~Rvi~i  390 (404)
T KOG1409|consen  326 N-RSSYPTMGFEFSVRVCDSCYPTIKDEER------TPLA------IPHEIKTG--ITAMHLQETLGLLVTSGTDRVIKI  390 (404)
T ss_pred             C-ccccccccceeEEEEecccchhhhcCCC------Cccc------cccccccc--eeEEEhhhhccceeecCCceEEEE
Confidence            2 2233333444456665543221111000      0011      11133444  999999888889999999999999


Q ss_pred             EECCC
Q 004745          275 MDVNH  279 (732)
Q Consensus       275 wd~~~  279 (732)
                      ||++.
T Consensus       391 wd~~~  395 (404)
T KOG1409|consen  391 WDVRS  395 (404)
T ss_pred             Eechh
Confidence            99987

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.95  E-value=3.8e-08  Score=100.05  Aligned_cols=64  Identities=13%  Similarity=0.307  Sum_probs=57.2

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCC-----CC-eEEEecCCCcEEEEcCCC
Q 004745          604 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPF-----DC-VVATSGIDNTIKIWTPSA  669 (732)
Q Consensus       604 ~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~-----~~-~l~S~s~D~~i~vW~~~~  669 (732)
                      ++|||+.|++||  +.|++||+++++.+.+|.||.++|.+++|--+     |. .|.+...+.-|.+|-+..
T Consensus       152 is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  152 ISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            699999999998  67999999999999999999999999999987     55 677777788899998766

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.92  E-value=2.9e-07  Score=84.22  Aligned_cols=237  Identities=12%  Similarity=0.031  Sum_probs=148.4

Q ss_pred             EEEEcC-----CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           24 AISWNS-----KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        24 ~l~~s~-----dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      .+.|.|     .-.+||.|+..|...+|...+.+....+...|...|+-+.=.-+. ...+..++.|.++++.++.....
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~-~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL-KFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc-ccceeeccCCcceeEEEEecCcc
Confidence            355665     334899999999999999987665444434454444322211111 13466678899999999885432


Q ss_pred             CCCCCCCCCCceeeccccC--ceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004745           99 RGLDDNAITPSALYQCHTR--RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  176 (732)
Q Consensus        99 ~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (732)
                      +            +.-|..  .++++++++ ++.++++.+....|..|.+......             +..      ..
T Consensus       151 ~------------~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey-------------~~~------~~  198 (344)
T KOG4532|consen  151 K------------FAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEY-------------IEN------IY  198 (344)
T ss_pred             c------------ceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccce-------------eee------eE
Confidence            1            222333  388899999 4599999999999999998765421             000      01


Q ss_pred             ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004745          177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  256 (732)
Q Consensus       177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  256 (732)
                      +..   ....-.+.+|+.. ...+|++..||++.|||++..........              ..  ..|+.+.+..+.|
T Consensus       199 ~a~---t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s--------------st--rp~hnGa~R~c~F  258 (344)
T KOG4532|consen  199 EAP---TSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAEIS--------------ST--RPHHNGAFRVCRF  258 (344)
T ss_pred             ecc---cCCCceeeeeccC-cceEEEEecCCcEEEEEecccccchhhhc--------------cc--CCCCCCceEEEEe
Confidence            111   1123356788887 67999999999999999997643221110              00  2244457999999


Q ss_pred             cCCCC--EEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccC-CCCCCccCCCccccc
Q 004745          257 SPNGE--EVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL-QPPIHDFLQTNIRVR  322 (732)
Q Consensus       257 sp~g~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~  322 (732)
                      ++-|.  +|+..-.-+.+.+-|+++....+.+...++.         ...+.. .+....|+.++...-
T Consensus       259 sl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~---------~~~~~tq~ifgt~f~~~n~s~~  318 (344)
T KOG4532|consen  259 SLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV---------ERKHNTQHIFGTNFNNENESND  318 (344)
T ss_pred             cCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc---------cccccccccccccccCCCcccc
Confidence            98763  5666666789999999998765555433322         122222 255555666555544

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.82  E-value=1.7e-07  Score=95.35  Aligned_cols=193  Identities=16%  Similarity=0.173  Sum_probs=139.0

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeeEEEEcc--CCCcCeEEEEEe------cC------------CCCCEEEEEECCCcE
Q 004745           29 SKGSLLISGSDDTHINVWSYSSRKLLHSIET--GHSANVFCTKFV------PE------------TSDELVVSGAGDAEV   88 (732)
Q Consensus        29 ~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~--~h~~~V~~~~~s------~~------------~~g~~l~s~~~dg~i   88 (732)
                      |-+.++|....||.+||||..+++....|..  .-.+..++..|.      |.            .+-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4567899999999999999999988777732  122344444442      21            011367888889999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      .+|++..+.-        .....-.+|.+.|+++.++. .-..|.+++.|+.+..|+.......            .+| 
T Consensus        83 ~~ys~~~g~i--------t~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~------------~~~-  140 (541)
T KOG4547|consen   83 LLYSVAGGEI--------TAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVII------------RIW-  140 (541)
T ss_pred             EEEEecCCeE--------EEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceee------------eee-
Confidence            9999886431        11223357999999999987 4578999999999999998876521            111 


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                                  ......+.+++.+|| +..+++++  +.|++||+.+.+.+..+                    .||.+
T Consensus       141 ------------~~~~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~~f--------------------tgh~s  185 (541)
T KOG4547|consen  141 ------------KEQKPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVITF--------------------TGHGS  185 (541)
T ss_pred             ------------ccCCCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEEEe--------------------cCCCc
Confidence                        122336788999999 78898876  57999999998776655                    66766


Q ss_pred             ccEEEEEEcCC-----CCEEEEEec-CCeEEEEECCC
Q 004745          249 LHLTHVTFSPN-----GEEVLLSYS-GEHVYLMDVNH  279 (732)
Q Consensus       249 ~~i~~l~~sp~-----g~~l~~~~~-dg~v~iwd~~~  279 (732)
                       +|+++.|--+     |.+++++.. +..+.+|-+..
T Consensus       186 -~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  186 -PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             -ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence             6999999876     777666644 66777886655

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.82  E-value=7.6e-07  Score=95.43  Aligned_cols=176  Identities=10%  Similarity=0.072  Sum_probs=107.4

Q ss_pred             cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCCCCCCCCCCCCceeeccccCc
Q 004745           42 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  118 (732)
Q Consensus        42 ~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  118 (732)
                      .|.++|...+.. ..+ ..+...+....|+|+  |+.|+..+.+   ..|.+||+.++..           ..+......
T Consensus       180 ~l~~~d~~g~~~-~~l-~~~~~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~-----------~~l~~~~g~  244 (430)
T PRK00178        180 TLQRSDYDGARA-VTL-LQSREPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRR-----------EQITNFEGL  244 (430)
T ss_pred             EEEEECCCCCCc-eEE-ecCCCceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCE-----------EEccCCCCC
Confidence            477788765543 444 356778999999999  4777766543   3588899986432           222222334


Q ss_pred             eeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC
Q 004745          119 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  196 (732)
Q Consensus       119 v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  196 (732)
                      +....|+|++..++++...+|  .|.+||+.+++..                       .+.   .+........|+|+ 
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~lt---~~~~~~~~~~~spD-  297 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-----------------------RVT---NHPAIDTEPFWGKD-  297 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-----------------------Ecc---cCCCCcCCeEECCC-
Confidence            556899997755555666565  5778888776421                       111   11123445689999 


Q ss_pred             CCEEEEEe-CCC--eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC-C--
Q 004745          197 PHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-E--  270 (732)
Q Consensus       197 ~~~l~tg~-~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d-g--  270 (732)
                      ++.|+..+ .++  .|+++|+.+++.. .+.           +       .+.   ......|+|+|++|+..+.+ +  
T Consensus       298 g~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt-----------~-------~~~---~~~~~~~Spdg~~i~~~~~~~~~~  355 (430)
T PRK00178        298 GRTLYFTSDRGGKPQIYKVNVNGGRAE-RVT-----------F-------VGN---YNARPRLSADGKTLVMVHRQDGNF  355 (430)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCEE-Eee-----------c-------CCC---CccceEECCCCCEEEEEEccCCce
Confidence            55555444 333  5777777665421 110           0       111   13356899999999887653 3  


Q ss_pred             eEEEEECCCCC
Q 004745          271 HVYLMDVNHAG  281 (732)
Q Consensus       271 ~v~iwd~~~~~  281 (732)
                      .|.+||+.+++
T Consensus       356 ~l~~~dl~tg~  366 (430)
T PRK00178        356 HVAAQDLQRGS  366 (430)
T ss_pred             EEEEEECCCCC
Confidence            58888988754

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.81  E-value=1.1e-08  Score=105.68  Aligned_cols=189  Identities=17%  Similarity=0.218  Sum_probs=137.4

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC--cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS--ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~--~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      .+++.++..+|.|+-+|.++.-| +.+-|+...-..-+++ .|-  =.|-.+.|+|...-.+-+.......-.+|++...
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            67889999999999999888765 6677876543322221 232  2467888988753345555555566779999876


Q ss_pred             CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCC--------------------CC
Q 004745           97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP--------------------AG  156 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~--------------------~~  156 (732)
                      +.+..       -..+.+|...|+.+.|+|+.+..+++++-|-.+..||+++......                    ..
T Consensus       102 s~~aI-------ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl  174 (1081)
T KOG0309|consen  102 SSNAI-------EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL  174 (1081)
T ss_pred             Cccce-------EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence            55432       4567799999999999999999999999999999999998875421                    11


Q ss_pred             CCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004745          157 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  217 (732)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~  217 (732)
                      ....+....+|+++.|.. ++....+|...|+++.|+..-...+.+++.|++|+.||....
T Consensus       175 asshg~~i~vwd~r~gs~-pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  175 ASSHGNDIFVWDLRKGST-PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             hhccCCceEEEeccCCCc-ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            122334466788877654 344455688889999998765567899999999999998754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.81  E-value=9.6e-06  Score=78.30  Aligned_cols=200  Identities=16%  Similarity=0.177  Sum_probs=121.8

Q ss_pred             CCcEEEEeCCCC--eeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCCCCCCCCCCCCceeecc
Q 004745           40 DTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQC  114 (732)
Q Consensus        40 dg~i~vWd~~~~--~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  114 (732)
                      +.-|++|++.+.  +........+.+.++-++|+|+.  ++|.++..   +|.|--|.++..++...      .+.....
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~--~~LY~v~~~~~~ggvaay~iD~~~G~Lt------~ln~~~~   86 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQ--RHLYVVNEPGEEGGVAAYRIDPDDGRLT------FLNRQTL   86 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCC--CEEEEEEecCCcCcEEEEEEcCCCCeEE------Eeecccc
Confidence            467999998733  22111113567888999999994  78888865   47788888875433321      1111111


Q ss_pred             ccCceeEEEEecCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC-ccceEEEEe
Q 004745          115 HTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-TLSLKSCDI  192 (732)
Q Consensus       115 h~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~  192 (732)
                      -..+.+.+++++++ ++++++.. -|.|.++-++....+...       ...+.....+..      ..+ ...+....|
T Consensus        87 ~g~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~-------v~~~~h~g~~p~------~rQ~~~h~H~a~~  152 (346)
T COG2706          87 PGSPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPV-------VQVVKHTGSGPH------ERQESPHVHSANF  152 (346)
T ss_pred             CCCCCeEEEECCCC-CEEEEEEccCceEEEEEcccCCccccc-------eeeeecCCCCCC------ccccCCccceeee
Confidence            22344889999965 66666654 578999998764322100       011111111100      011 113678899


Q ss_pred             cCCCCCEEEEEeC-CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CC
Q 004745          193 SSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE  270 (732)
Q Consensus       193 ~~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg  270 (732)
                      .|+ +++|++..- -..|.+|++..++....-              +...    ..+.....|.|+|++++.++.+. ++
T Consensus       153 tP~-~~~l~v~DLG~Dri~~y~~~dg~L~~~~--------------~~~v----~~G~GPRHi~FHpn~k~aY~v~EL~s  213 (346)
T COG2706         153 TPD-GRYLVVPDLGTDRIFLYDLDDGKLTPAD--------------PAEV----KPGAGPRHIVFHPNGKYAYLVNELNS  213 (346)
T ss_pred             CCC-CCEEEEeecCCceEEEEEcccCcccccc--------------cccc----CCCCCcceEEEcCCCcEEEEEeccCC
Confidence            999 677777643 347999999965432111              1111    11223678999999999999888 99


Q ss_pred             eEEEEECCCC
Q 004745          271 HVYLMDVNHA  280 (732)
Q Consensus       271 ~v~iwd~~~~  280 (732)
                      +|.+|.....
T Consensus       214 tV~v~~y~~~  223 (346)
T COG2706         214 TVDVLEYNPA  223 (346)
T ss_pred             EEEEEEEcCC
Confidence            9999999883

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=1.5e-08  Score=101.23  Aligned_cols=176  Identities=16%  Similarity=0.181  Sum_probs=125.9

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~-------~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      ...+.||...|++++--.+.+-+++++.|++|++|.++.       ..+..++ +.|+.+|.++.|..+-  ++++++  
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~l--r~i~Sc--  802 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLADL--RSIASC--  802 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeecc--ceeeec--
Confidence            346889999999998777788899999999999998762       3366666 7899999999999883  677665  


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeec--cccCceeEEEEecC-CCcE-EEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVG-NPHV-VWSASEDGTLRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~-~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  160 (732)
                      ||-|.+||.-.+.  .        +..+.  ...+.+..+..-|+ +..+ ++.|+...+|+++|.+..+-..       
T Consensus       803 D~giHlWDPFigr--~--------Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~-------  865 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGR--L--------LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTC-------  865 (1034)
T ss_pred             cCcceeecccccc--h--------hHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccccee-------
Confidence            8999999976422  1        11111  11223333444443 3333 4445788999999998876320       


Q ss_pred             ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccc
Q 004745          161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  223 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~  223 (732)
                                   ...+...++....+.+++..+. |++++++-.+|+|.+.|.++++.+..+
T Consensus       866 -------------E~kVcna~~Pna~~R~iaVa~~-GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  866 -------------ELKVCNAPGPNALTRAIAVADK-GNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             -------------eEEeccCCCCchheeEEEeccC-cchhhHHhcCCcEEEEecCCCceeccC
Confidence                         1122233444557889999988 899999999999999999999877665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.79  E-value=2.2e-05  Score=78.97  Aligned_cols=72  Identities=11%  Similarity=0.081  Sum_probs=57.1

Q ss_pred             ccCCCCEEEEec----------CCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCC-eEEEec-CCCcEEEEcCCCCC
Q 004745          604 LGQRGDYIASGS----------DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSG-IDNTIKIWTPSASV  671 (732)
Q Consensus       604 ~s~dg~~lasgs----------~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~-~l~S~s-~D~~i~vW~~~~~~  671 (732)
                      +++||++|....          ..+.|.++|.++++.+..+.- ...+..++|+||++ +|++.. .++.|.|.|..+++
T Consensus       255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence            466666655532          224799999999999998885 45899999999999 777666 68889999999999


Q ss_pred             Ccccc
Q 004745          672 PSIVS  676 (732)
Q Consensus       672 ~~~~~  676 (732)
                      .+.+.
T Consensus       334 ~i~~i  338 (352)
T TIGR02658       334 ELSSV  338 (352)
T ss_pred             EEeee
Confidence            88765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.74  E-value=1.8e-05  Score=76.51  Aligned_cols=247  Identities=12%  Similarity=0.102  Sum_probs=152.5

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeC---CCcEEEEeCCC--CeeE--EEEccCCCcCeEEEEEecCCCCCEEEEEEC-CCcE
Q 004745           17 GHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSS--RKLL--HSIETGHSANVFCTKFVPETSDELVVSGAG-DAEV   88 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~---dg~i~vWd~~~--~~~~--~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg~i   88 (732)
                      .+.+..+-|+|+|++++|.++..   +|.|-.|.+..  |+..  .+. ..-..+-..++++++  |++++++.. .|.|
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~~p~yvsvd~~--g~~vf~AnY~~g~v  113 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGSPPCYVSVDED--GRFVFVANYHSGSV  113 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCCCCCeEEEECCC--CCEEEEEEccCceE
Confidence            46778899999999999998854   47787776664  4432  222 122334488999998  588888865 6889


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCc----------eeEEEEecCCCcEEEEEe--CCCcEEEEECCCCCCCCCCC
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRR----------VKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAG  156 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~~p~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~  156 (732)
                      .++-++.. +..      ........|.+.          +....+.|++ +++++..  .| .|.+|++..+...... 
T Consensus       114 ~v~p~~~d-G~l------~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~D-ri~~y~~~dg~L~~~~-  183 (346)
T COG2706         114 SVYPLQAD-GSL------QPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTD-RIFLYDLDDGKLTPAD-  183 (346)
T ss_pred             EEEEcccC-Ccc------ccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCc-eEEEEEcccCcccccc-
Confidence            99999753 221      112222234444          7888999966 6776653  44 6999999977643110 


Q ss_pred             CCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe-CCCeEEEEECCCC-CCCcccccCCCCCCccc
Q 004745          157 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRML-PPLTSCQKRMSPPPCVN  234 (732)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~-~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~  234 (732)
                                         ....  .....-..|.|+|+ +++..+.+ -+++|-+|..... ..+..++.....     
T Consensus       184 -------------------~~~v--~~G~GPRHi~FHpn-~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl-----  236 (346)
T COG2706         184 -------------------PAEV--KPGAGPRHIVFHPN-GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL-----  236 (346)
T ss_pred             -------------------cccc--CCCCCcceEEEcCC-CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC-----
Confidence                               0000  11224577999999 66665554 5899999998874 223332221111     


Q ss_pred             cccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCc
Q 004745          235 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHD  313 (732)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (732)
                         |..+  .+.  .+...|.++|+|++|+++.. ...|-+|.+........            +......+...+....
T Consensus       237 ---P~dF--~g~--~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~------------~~~~~~teg~~PR~F~  297 (346)
T COG2706         237 ---PEDF--TGT--NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLE------------LVGITPTEGQFPRDFN  297 (346)
T ss_pred             ---cccc--CCC--CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEE------------EEEEeccCCcCCccce
Confidence               1111  222  24778999999999998866 45888888876432211            1111222233466777


Q ss_pred             cCCCccccc
Q 004745          314 FLQTNIRVR  322 (732)
Q Consensus       314 ~~~~g~~~~  322 (732)
                      |.+.|+++.
T Consensus       298 i~~~g~~Li  306 (346)
T COG2706         298 INPSGRFLI  306 (346)
T ss_pred             eCCCCCEEE
Confidence            888888776

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.73  E-value=2.8e-08  Score=65.52  Aligned_cols=38  Identities=39%  Similarity=0.834  Sum_probs=36.6

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEe
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS   47 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd   47 (732)
                      ++++++++|.++|++|+|+|++++|++|+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.72  E-value=1.1e-07  Score=86.51  Aligned_cols=134  Identities=22%  Similarity=0.246  Sum_probs=89.0

Q ss_pred             cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEE
Q 004745           63 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR  142 (732)
Q Consensus        63 ~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  142 (732)
                      ..|.+++-+|.. .+++++|+.||.+-+||.+...         .++..++.|+..++.+-|+|.++..|+++++||.+.
T Consensus       180 ~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~---------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw  249 (319)
T KOG4714|consen  180 DAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVA---------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLW  249 (319)
T ss_pred             ccchhhhCCccc-ccEEEEecCCCeEEEEEccccc---------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEE
Confidence            448888888886 4788888999999999999642         457788999999999999999999999999999999


Q ss_pred             EEECCCCCCCCCCCCCCcccceEEe---eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEE
Q 004745          143 QHDFRQGSSCPPAGSSHQECRNILL---DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  213 (732)
Q Consensus       143 vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd  213 (732)
                      .||..+.-..    ..........|   ++.......-...+.....|+++...   |..|++|+.-+.|++++
T Consensus       250 ~wdas~~~l~----i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~---g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  250 HWDASTTFLS----ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL---GPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EEcCCCceEE----ecCccccccccccCCcccceEeeeccccccceeeeeeecc---CceEEeccccceEEEec
Confidence            9998752110    00000000011   00000000001112233355555554   56899999888888875

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.72  E-value=3.9e-06  Score=86.59  Aligned_cols=228  Identities=14%  Similarity=0.185  Sum_probs=134.7

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEe-CCCcEEEEeCCC-CeeEEE---Ec---------cCCCcCeEEEEEecCCC
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSS-RKLLHS---IE---------TGHSANVFCTKFVPETS   75 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~-~dg~i~vWd~~~-~~~~~~---~~---------~~h~~~V~~~~~s~~~~   75 (732)
                      +++.........-..++++|++++|+++. .+|.|.++++.. +.....   +.         ..-.....++.|+|+  
T Consensus        77 ~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd--  154 (345)
T PF10282_consen   77 TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD--  154 (345)
T ss_dssp             EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT--
T ss_pred             EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC--
Confidence            33444432334445799999999999886 489999999986 433222   10         012244688999999  


Q ss_pred             CCEEEEEE-CCCcEEEEEcCCCCCCCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004745           76 DELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  153 (732)
Q Consensus        76 g~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~  153 (732)
                      |+++++.. ....|.+|++....+..      .....+ .......+.++|+|++...+++...++.|.++++....-. 
T Consensus       155 g~~v~v~dlG~D~v~~~~~~~~~~~l------~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~-  227 (345)
T PF10282_consen  155 GRFVYVPDLGADRVYVYDIDDDTGKL------TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS-  227 (345)
T ss_dssp             SSEEEEEETTTTEEEEEEE-TTS-TE------EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE-
T ss_pred             CCEEEEEecCCCEEEEEEEeCCCceE------EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc-
Confidence            47776654 45679999998643221      111112 1234568899999977556666777889999998833210 


Q ss_pred             CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe-CCCeEEEEECCCC-CCCcccccCCCCCC
Q 004745          154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRML-PPLTSCQKRMSPPP  231 (732)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~-~dg~v~iwd~~~~-~~~~~~~~~~~~~~  231 (732)
                               ...+....     .+............|.++|+ +++|+++. .++.|.+|++... ..+....       
T Consensus       228 ---------~~~~~~~~-----~~~~~~~~~~~~~~i~ispd-g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~-------  285 (345)
T PF10282_consen  228 ---------LTEIQTIS-----TLPEGFTGENAPAEIAISPD-GRFLYVSNRGSNSISVFDLDPATGTLTLVQ-------  285 (345)
T ss_dssp             ---------EEEEEEEE-----SCETTSCSSSSEEEEEE-TT-SSEEEEEECTTTEEEEEEECTTTTTEEEEE-------
T ss_pred             ---------eeEEEEee-----eccccccccCCceeEEEecC-CCEEEEEeccCCEEEEEEEecCCCceEEEE-------
Confidence                     00111000     01001111126788999999 66666654 5678999999432 2221110       


Q ss_pred             ccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCC
Q 004745          232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  279 (732)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~  279 (732)
                         ..   ..  .   +.....++++|+|++|+++.. ++.|.+|++..
T Consensus       286 ---~~---~~--~---G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  286 ---TV---PT--G---GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             ---EE---EE--S---SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             ---EE---eC--C---CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence               00   00  1   113788999999999999886 67999998753

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.71  E-value=3.2e-06  Score=79.08  Aligned_cols=196  Identities=12%  Similarity=0.084  Sum_probs=119.8

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccC------CCcCeEEEEEecCCC----CCEEEEEECCCcEE
Q 004745           20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG------HSANVFCTKFVPETS----DELVVSGAGDAEVR   89 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~------h~~~V~~~~~s~~~~----g~~l~s~~~dg~i~   89 (732)
                      -.=+.++||||+.+||.+...|+|+++|+.. ..+..+...      -..+|..+.|.+...    ...|+.-..+|.++
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            3446789999999999999999999999875 333344222      235677788876420    02466667788888


Q ss_pred             EEEcCCCCCCCCCCCCCCCcee--ec-cccCceeEEEEecCCCcEEEEEeC-CC----------cEEEEECCCCCCCCCC
Q 004745           90 LFNLSRFSGRGLDDNAITPSAL--YQ-CHTRRVKKLAVEVGNPHVVWSASE-DG----------TLRQHDFRQGSSCPPA  155 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~--~~-~h~~~v~~l~~~p~~~~~l~s~s~-dg----------~i~vwd~~~~~~~~~~  155 (732)
                      -|-+..+..+.     ....+.  +. .+...|+++.++|.. ++|+.||. ..          -+..|.+-.+.+-...
T Consensus       123 Sy~vs~gt~q~-----y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~  196 (282)
T PF15492_consen  123 SYLVSVGTNQG-----YQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ  196 (282)
T ss_pred             eEEEEcccCCc-----ceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence            88764321111     111222  22 246789999999965 56655542 21          3667877666543211


Q ss_pred             CCCCccc---c---eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccccc
Q 004745          156 GSSHQEC---R---NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  225 (732)
Q Consensus       156 ~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~  225 (732)
                      .....+.   .   ..++.+.+  .+...........|..|..+|+ +.+||+...+|.|.+|++.+.+....+..
T Consensus       197 v~~~~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~d~i~kmSlSPd-g~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  197 VTSSEDDITASSKRRGLLRIPS--FKFFSRQGQEQDGIFKMSLSPD-GSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             ccccCccccccccccceeeccc--eeeeeccccCCCceEEEEECCC-CCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            1111100   0   01111110  0011111224558999999999 88999999999999999999877766643

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.70  E-value=4.9e-06  Score=97.34  Aligned_cols=298  Identities=13%  Similarity=0.073  Sum_probs=161.1

Q ss_pred             eEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeEEEEcc-CC------------CcCeEEEEEecCCCCCEEEEE-ECCCc
Q 004745           23 NAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIET-GH------------SANVFCTKFVPETSDELVVSG-AGDAE   87 (732)
Q Consensus        23 ~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~~~~~~~~-~h------------~~~V~~~~~s~~~~g~~l~s~-~~dg~   87 (732)
                      ..++++++ ++++++-+.++.|++||.. ++.+..+-. +.            -.....+++++++  +.|+.+ ...+.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g--n~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK--NLLYVADTENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC--CEEEEEeCCCce
Confidence            35788874 6677777788999999975 444444411 11            1235789999873  555444 45678


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeecc-------ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  160 (732)
                      |+++|+.+.....+.... .......+       .-.....++++|+++.++++.+.++.|++||..++........+..
T Consensus       648 Ir~id~~~~~V~tlag~G-~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~  726 (1057)
T PLN02919        648 LREIDFVNETVRTLAGNG-TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE  726 (1057)
T ss_pred             EEEEecCCCEEEEEeccC-cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence            999998753210000000 00000000       0123467999997768888888889999999877542100000000


Q ss_pred             ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccc
Q 004745          161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  240 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (732)
                      .       ...+..    .....-.....|+++|++..++++-+.++.|++||+.++............+.....+....
T Consensus       727 ~-------~~~g~~----~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d  795 (1057)
T PLN02919        727 R-------NLNGSS----GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD  795 (1057)
T ss_pred             c-------cCCCCc----cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence            0       000000    00011124578999999444666667789999999986542100000000000000000000


Q ss_pred             -cccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcc
Q 004745          241 -LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNI  319 (732)
Q Consensus       241 -~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  319 (732)
                       ........ ....++++++|+.+++-+.++.|++||..++... .+.+.+...  ..=.+.....-..+..+++.++|+
T Consensus       796 G~g~~~~l~-~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G--~~dG~~~~a~l~~P~GIavd~dG~  871 (1057)
T PLN02919        796 GVGSEVLLQ-HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAG--FKDGKALKAQLSEPAGLALGENGR  871 (1057)
T ss_pred             Cchhhhhcc-CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcC--CCCCcccccccCCceEEEEeCCCC
Confidence             00000011 2468999999998888888999999999874322 222211100  000001122223567788999998


Q ss_pred             ccccccccCcchhhHHHHHHHhhhhcCC
Q 004745          320 RVRGEVATGLGKCRMLVEIARNSLEEGK  347 (732)
Q Consensus       320 ~~~~~~~~~~d~~~~l~~~~~~~~~~~~  347 (732)
                      .++   +-..++.+++     |++.++.
T Consensus       872 lyV---aDt~Nn~Irv-----id~~~~~  891 (1057)
T PLN02919        872 LFV---ADTNNSLIRY-----LDLNKGE  891 (1057)
T ss_pred             EEE---EECCCCEEEE-----EECCCCc
Confidence            776   7888888888     8877665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.70  E-value=1.3e-05  Score=75.09  Aligned_cols=231  Identities=14%  Similarity=0.145  Sum_probs=135.4

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCC--eeEE--EEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCC
Q 004745           25 ISWNSKGSLLISGSDDTHINVWSYSSR--KLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  100 (732)
Q Consensus        25 l~~s~dg~~lasg~~dg~i~vWd~~~~--~~~~--~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~  100 (732)
                      ++.+.||++||.- .|..|-|-..++.  ..+.  .+.+.-.-.-..++|||+  +.+||.+...|+|+++|+.....-.
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~lf~   79 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSELFV   79 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccceeEE
Confidence            5677899988876 5677777755432  1222  232222234578999999  4899999999999999998422111


Q ss_pred             CCCCCCCCceeec-cccCceeEEEEecCC-----CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745          101 LDDNAITPSALYQ-CHTRRVKKLAVEVGN-----PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus       101 ~~~~~~~~~~~~~-~h~~~v~~l~~~p~~-----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                      .     .+...+. .-...|-.+.|.+..     ...|+.-..+|.++-|-+..+....                 ....
T Consensus        80 I-----~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-----------------y~e~  137 (282)
T PF15492_consen   80 I-----PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-----------------YQEN  137 (282)
T ss_pred             c-----CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-----------------ceee
Confidence            1     1111111 123567777775532     2246666777888877764332100                 0011


Q ss_pred             ccccCCCCCccceEEEEecCCCCCEEEEEeCC-----------CeEEEEECCCCCCCcccccCCCC-------CCccccc
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----------AFARLYDRRMLPPLTSCQKRMSP-------PPCVNYF  236 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-----------g~v~iwd~~~~~~~~~~~~~~~~-------~~~~~~~  236 (732)
                      ..+.........|.++.++|. .++|++||..           .-+..|.+-+..+..+.-.....       ..+...+
T Consensus       138 hsfsf~~~yp~Gi~~~vy~p~-h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~  216 (282)
T PF15492_consen  138 HSFSFSSHYPHGINSAVYHPK-HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI  216 (282)
T ss_pred             EEEEecccCCCceeEEEEcCC-CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence            123333445568999999998 5677776532           13667777665543332111100       1111111


Q ss_pred             ccccc-ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          237 CPMHL-SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       237 ~~~~~-~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      ....+ ...+.....|..+..||||+.|++...+|.|.+|++.+-+
T Consensus       217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             cceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence            11111 1123333469999999999999999999999999998854

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=1.2e-06  Score=90.80  Aligned_cols=170  Identities=14%  Similarity=0.161  Sum_probs=123.6

Q ss_pred             CCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC--CC---CCCCCCCceeeccccCceeEEEEecCCCcEEEEE
Q 004745           61 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR--GL---DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA  135 (732)
Q Consensus        61 h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~--~~---~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  135 (732)
                      ......|++|..++  .+|+.|+.||.++|-.+.+....  ..   .......-+++.||+..|.-+.|+.++ +.|-|.
T Consensus        13 nnvkL~c~~WNke~--gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtS   89 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKES--GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTS   89 (1189)
T ss_pred             CCceEEEEEEcccC--CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-cccccc
Confidence            34557899999985  79999999999999988753211  11   122233456889999999999999844 788888


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004745          136 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  215 (732)
Q Consensus       136 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~  215 (732)
                      ..+|.|.+|-+-.+.-+.                      .+ ........|.+++|+.+ |..++..-.||.|.+=.+.
T Consensus        90 Dt~GlIiVWmlykgsW~E----------------------EM-iNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVGsvd  145 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCE----------------------EM-INNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVGSVD  145 (1189)
T ss_pred             CCCceEEEEeeecccHHH----------------------HH-hhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEEeec
Confidence            899999999988775320                      01 11223447899999999 7788888899988877766


Q ss_pred             CCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          216 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ..+...+-                 +  .|   .....+.|++|.+.++.+-..|.+.+||.+.
T Consensus       146 GNRIwgKe-----------------L--kg---~~l~hv~ws~D~~~~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  146 GNRIWGKE-----------------L--KG---QLLAHVLWSEDLEQALFKKANGETHLYDNQG  187 (1189)
T ss_pred             cceecchh-----------------c--ch---heccceeecccHHHHHhhhcCCcEEEecccc
Confidence            43321100                 0  11   1356789999999999999999999999876

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.67  E-value=4.2e-06  Score=97.94  Aligned_cols=245  Identities=11%  Similarity=0.134  Sum_probs=137.2

Q ss_pred             eeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeeEEEEcc-CC---------------CcCeEEEEEecCCCCCEEEEEEC
Q 004745           22 VNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIET-GH---------------SANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~-~dg~i~vWd~~~~~~~~~~~~-~h---------------~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      -..++++++++.|+++. ..+.|+++|+.++.. .++.. +.               -..-.+++|+|+. +.++++.+.
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~-g~LyVad~~  703 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN-EKVYIAMAG  703 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC-CeEEEEECC
Confidence            57889999887665554 457899999877653 22211 00               1134689999953 577788788


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCC-CCc---eeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAI-TPS---ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~-~~~---~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  160 (732)
                      ++.|++||...+.......... ...   ............|+++|++..++++-+.++.|++||+.++...... .+..
T Consensus       704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~-gg~~  782 (1057)
T PLN02919        704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA-GGDP  782 (1057)
T ss_pred             CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE-eccc
Confidence            8999999987532110000000 000   0000112346779999977557777788899999999875421000 0000


Q ss_pred             ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccc
Q 004745          161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  240 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (732)
                      .....+.......  ... .........+++++++ +.++++-..++.|++||..++....... ....     .+....
T Consensus       783 ~~~~~l~~fG~~d--G~g-~~~~l~~P~Gvavd~d-G~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~-----G~~dG~  852 (1057)
T PLN02919        783 TFSDNLFKFGDHD--GVG-SEVLLQHPLGVLCAKD-GQIYVADSYNHKIKKLDPATKRVTTLAG-TGKA-----GFKDGK  852 (1057)
T ss_pred             ccCcccccccCCC--Cch-hhhhccCCceeeEeCC-CcEEEEECCCCEEEEEECCCCeEEEEec-cCCc-----CCCCCc
Confidence            0000000000000  000 0001112357899998 6788888899999999998754321110 0000     000000


Q ss_pred             cccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       241 ~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                       ...+.-. ....++++++|+.+++-+.++.|++||+.++.
T Consensus       853 -~~~a~l~-~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        853 -ALKAQLS-EPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             -ccccccC-CceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence             0011111 36789999999988888889999999998854

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.65  E-value=1.1e-05  Score=84.76  Aligned_cols=198  Identities=16%  Similarity=0.079  Sum_probs=108.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004745           30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  109 (732)
Q Consensus        30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  109 (732)
                      .+..+++++.++.|.-+|..+|+.+.++. -..........  +  +..++.++.++.+..+|..+++.          +
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~p~v--~--~~~v~v~~~~g~l~ald~~tG~~----------~  128 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVD-LDERLSGGVGA--D--GGLVFVGTEKGEVIALDAEDGKE----------L  128 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeec-CCCCcccceEE--c--CCEEEEEcCCCEEEEEECCCCcE----------e
Confidence            35678888889999999999999887762 22211112222  2  36788888899999999986532          2


Q ss_pred             eeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEE
Q 004745          110 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  189 (732)
Q Consensus       110 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  189 (732)
                      ..... ...+.+.... .+ ..++.++.++.|..||..+++.              +|........ . .....    .+
T Consensus       129 W~~~~-~~~~~~~p~v-~~-~~v~v~~~~g~l~a~d~~tG~~--------------~W~~~~~~~~-~-~~~~~----~s  185 (377)
T TIGR03300       129 WRAKL-SSEVLSPPLV-AN-GLVVVRTNDGRLTALDAATGER--------------LWTYSRVTPA-L-TLRGS----AS  185 (377)
T ss_pred             eeecc-CceeecCCEE-EC-CEEEEECCCCeEEEEEcCCCce--------------eeEEccCCCc-e-eecCC----CC
Confidence            22211 1122111111 13 4566677889999999998873              2322211100 0 00000    01


Q ss_pred             EEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE-EEEEEcCCCCEEEEEec
Q 004745          190 CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL-THVTFSPNGEEVLLSYS  268 (732)
Q Consensus       190 i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~sp~g~~l~~~~~  268 (732)
                      ....   +..++.+..++.+..+|+++++.+-...........           .......+ ....+  .+..+++++.
T Consensus       186 p~~~---~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~-----------~~~~~~~~~~~p~~--~~~~vy~~~~  249 (377)
T TIGR03300       186 PVIA---DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRT-----------ELERLVDVDGDPVV--DGGQVYAVSY  249 (377)
T ss_pred             CEEE---CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCC-----------chhhhhccCCccEE--ECCEEEEEEc
Confidence            1111   236778888899999999888654322110000000           00000000 01111  2457888889


Q ss_pred             CCeEEEEECCCCC
Q 004745          269 GEHVYLMDVNHAG  281 (732)
Q Consensus       269 dg~v~iwd~~~~~  281 (732)
                      +|.++.||..+++
T Consensus       250 ~g~l~a~d~~tG~  262 (377)
T TIGR03300       250 QGRVAALDLRSGR  262 (377)
T ss_pred             CCEEEEEECCCCc
Confidence            9999999998854

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.64  E-value=2.5e-07  Score=105.20  Aligned_cols=76  Identities=16%  Similarity=0.157  Sum_probs=67.5

Q ss_pred             eeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCC
Q 004745          589 VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPS  668 (732)
Q Consensus       589 ~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~  668 (732)
                      ..|...++++.    +-|.-+.|.||+.+|.|++||++..+++++++.         +. ...++++++..|.|+||++.
T Consensus      2333 ~~H~~gaT~l~----~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2333 TCHDGGATVLA----YAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred             eecCCCceEEE----EcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcc
Confidence            78988888877    789999999999999999999999998888876         44 56699999999999999999


Q ss_pred             CCCCccccCC
Q 004745          669 ASVPSIVSGG  678 (732)
Q Consensus       669 ~~~~~~~~~g  678 (732)
                      ....+.+|.+
T Consensus      2399 ~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2399 EFGLLHTFPS 2408 (2439)
T ss_pred             ccchhhcCch
Confidence            9998888763

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.64  E-value=9.2e-07  Score=85.97  Aligned_cols=162  Identities=17%  Similarity=0.205  Sum_probs=111.8

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe----eEEEEccCCCcCeEEEEEecCCCCCEEEEE---ECCCcEEEEEcC
Q 004745           22 VNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSG---AGDAEVRLFNLS   94 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~----~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~---~~dg~i~vwd~~   94 (732)
                      +..+..++.+++||++..+....++++....    .+...  .-...-+++.|..+.  .....+   +....+.+|...
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~--~sv~v~dkagD~~~~di~s~~  140 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIRED--TSVLVADKAGDVYSFDILSAD  140 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeecc--ceEEEEeecCCceeeeeeccc
Confidence            3445677889999999888877777765332    22222  222334555665553  344433   334455556554


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                      .  +.         ...+-||-..++.++|+||+ ++|+++-.|..|++-.......+                      
T Consensus       141 ~--~~---------~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~I----------------------  186 (390)
T KOG3914|consen  141 S--GR---------CEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVI----------------------  186 (390)
T ss_pred             c--cC---------cchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccch----------------------
Confidence            3  11         35567899999999999965 89999999999999776554321                      


Q ss_pred             ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccccc
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  225 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~  225 (732)
                        -....+|...|..++.-++  +.|++|+.|++|++||+.+++.+..+..
T Consensus       187 --esfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  187 --ESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             --hhhccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccch
Confidence              1234567889999999885  4799999999999999999998876643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.64  E-value=3.8e-06  Score=89.75  Aligned_cols=176  Identities=7%  Similarity=0.075  Sum_probs=103.3

Q ss_pred             cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-CC--cEEEEEcCCCCCCCCCCCCCCCceeeccccCc
Q 004745           42 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  118 (732)
Q Consensus        42 ~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  118 (732)
                      .|.++|...... ..+ ..+...+.+..|+|+  |+.|+..+. ++  .|.+||+.++...        .+..+   ...
T Consensus       199 ~l~i~d~dG~~~-~~l-~~~~~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~~--------~lt~~---~g~  263 (448)
T PRK04792        199 QLMIADYDGYNE-QML-LRSPEPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVRE--------KVTSF---PGI  263 (448)
T ss_pred             EEEEEeCCCCCc-eEe-ecCCCcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCeE--------EecCC---CCC
Confidence            577778655443 334 456778899999999  477766543 33  5888888764321        12222   223


Q ss_pred             eeEEEEecCCCcEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC
Q 004745          119 VKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  196 (732)
Q Consensus       119 v~~l~~~p~~~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  196 (732)
                      ....+|+|++..++++.+.+|.  |.++|+.+++..                       .+.   .+........|+|+ 
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-----------------------~lt---~~~~~~~~p~wSpD-  316 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-----------------------RIT---RHRAIDTEPSWHPD-  316 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-----------------------ECc---cCCCCccceEECCC-
Confidence            4468999977556566677775  777787665411                       111   11223456789999 


Q ss_pred             CCEEEEEe-CCC--eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CC--
Q 004745          197 PHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE--  270 (732)
Q Consensus       197 ~~~l~tg~-~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg--  270 (732)
                      ++.|+..+ .++  .|+++|+.+++.. .+.           +       .+.   .....+|+|+|++|+..+. ++  
T Consensus       317 G~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt-----------~-------~g~---~~~~~~~SpDG~~l~~~~~~~g~~  374 (448)
T PRK04792        317 GKSLIFTSERGGKPQIYRVNLASGKVS-RLT-----------F-------EGE---QNLGGSITPDGRSMIMVNRTNGKF  374 (448)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCEE-EEe-----------c-------CCC---CCcCeeECCCCCEEEEEEecCCce
Confidence            55665544 344  4666677655321 110           0       111   1234689999999887765 34  


Q ss_pred             eEEEEECCCCC
Q 004745          271 HVYLMDVNHAG  281 (732)
Q Consensus       271 ~v~iwd~~~~~  281 (732)
                      .|.++|+.++.
T Consensus       375 ~I~~~dl~~g~  385 (448)
T PRK04792        375 NIARQDLETGA  385 (448)
T ss_pred             EEEEEECCCCC
Confidence            45566776643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.64  E-value=6.2e-08  Score=93.91  Aligned_cols=150  Identities=9%  Similarity=0.099  Sum_probs=103.6

Q ss_pred             cCCCCCCCCcccccccccCCcc----eeeccCCCCccccccCCCCCCCCCCCCCCCC---CccccccccccceeEeeecc
Q 004745          521 HTSVPGDEGRDVEANFLHGSLN----VRIHRRGDSARETVDANGSSGSPSSSSQNDR---IPYQPETVIDMKQRYVGHCN  593 (732)
Q Consensus       521 ~~~~s~~~d~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~gh~~  593 (732)
                      ++++.+..++...+..+.++..    .....-....+.+.|-.+.+.+..+-..+|.   .+|....  .......||-.
T Consensus        75 ~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~~~~~~lGhvS  152 (390)
T KOG3914|consen   75 RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--GRCEPILGHVS  152 (390)
T ss_pred             eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--cCcchhhhhhh
Confidence            6666666665554544432221    1111122233555565666655554333333   3355443  24556679988


Q ss_pred             ccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEE-ecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCC
Q 004745          594 VGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKML-LGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVP  672 (732)
Q Consensus       594 ~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l-~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~  672 (732)
                      .++.|.    +|||+++|.|+.+|..|+|=.++.--.+..| -||++-|..++.-++.. |+|+|.|++||+||+.++++
T Consensus       153 ml~dVa----vS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  153 MLLDVA----VSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             hhheee----ecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecccCCc
Confidence            877777    7999999999999999999888876666655 57999999999987655 88999999999999999999


Q ss_pred             ccccC
Q 004745          673 SIVSG  677 (732)
Q Consensus       673 ~~~~~  677 (732)
                      +.++.
T Consensus       228 L~t~d  232 (390)
T KOG3914|consen  228 LDTCD  232 (390)
T ss_pred             ccccc
Confidence            97764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.61  E-value=1.1e-05  Score=80.79  Aligned_cols=117  Identities=16%  Similarity=0.108  Sum_probs=76.8

Q ss_pred             cCCCCccccccCCCCCCCCCCCCCCCCCc--cccccccccceeEeeeccccceeeecccccCCCCEEEEecCC---CcEE
Q 004745          547 RRGDSARETVDANGSSGSPSSSSQNDRIP--YQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDD---GRWF  621 (732)
Q Consensus       547 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~D---g~i~  621 (732)
                      ...++|..++|+|+++.+++..+-....+  ++..+.  +  +|.+-...-.-+.    |||.++|++.++-|   |.|-
T Consensus       272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l--~~~~Pe~~rNT~~----fsp~~r~il~agF~nl~gni~  343 (561)
T COG5354         272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--L--RFYFPEQKRNTIF----FSPHERYILFAGFDNLQGNIE  343 (561)
T ss_pred             cccccceeeeecccCCceeEEecccccceeecccccc--e--EEecCCccccccc----ccCcccEEEEecCCccccceE
Confidence            45788999999999999887753333333  444442  2  2222211111133    79999999997654   7899


Q ss_pred             EEEcCcccEEE-EEecCcccEEEEeecCCCCeEEEe--c----CCCcEEEEcCCCCCCc
Q 004745          622 IWEKQTGRLIK-MLLGDEAVVNCVQCHPFDCVVATS--G----IDNTIKIWTPSASVPS  673 (732)
Q Consensus       622 iWd~~tg~~~~-~l~gH~~~V~~v~fsp~~~~l~S~--s----~D~~i~vW~~~~~~~~  673 (732)
                      +||....-.+. .+.|-..  .-+.|+||+.++.+.  |    .|..|+|||+...+-.
T Consensus       344 i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         344 IFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             EeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence            99977554443 7776443  446799999955443  3    3889999999776543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=1.9e-07  Score=93.59  Aligned_cols=181  Identities=15%  Similarity=0.208  Sum_probs=121.3

Q ss_pred             EEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEE
Q 004745           54 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  133 (732)
Q Consensus        54 ~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~  133 (732)
                      +..+ .+|+..|..+.-..++  +-+++++.|.+|++|.++.....   .....+..+++.|+.+|.++.|-.+. ++++
T Consensus       728 L~nf-~GH~~~iRai~AidNE--NSFiSASkDKTVKLWSik~EgD~---~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~  800 (1034)
T KOG4190|consen  728 LCNF-TGHQEKIRAIAAIDNE--NSFISASKDKTVKLWSIKPEGDE---IGTSACQFTYQAHKKPIHDIGFLADL-RSIA  800 (1034)
T ss_pred             eecc-cCcHHHhHHHHhcccc--cceeeccCCceEEEEEeccccCc---cccceeeeEhhhccCcccceeeeecc-ceee
Confidence            4455 6999999988777664  78999999999999999842111   11123567889999999999998843 6665


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEE-eCCCeEEEE
Q 004745          134 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-GSDAFARLY  212 (732)
Q Consensus       134 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg-~~dg~v~iw  212 (732)
                        +.||.|.+||.--+.....          +.+..+.          +....|.++.- -+ ..++++| +...+|+++
T Consensus       801 --ScD~giHlWDPFigr~Laq----------~~dapk~----------~a~~~ikcl~n-v~-~~iliAgcsaeSTVKl~  856 (1034)
T KOG4190|consen  801 --SCDGGIHLWDPFIGRLLAQ----------MEDAPKE----------GAGGNIKCLEN-VD-RHILIAGCSAESTVKLF  856 (1034)
T ss_pred             --eccCcceeecccccchhHh----------hhcCccc----------CCCceeEeccc-Cc-chheeeeccchhhheee
Confidence              4588999999866653310          1111111          11122333321 12 3344444 778999999


Q ss_pred             ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      |.+..+-...+.....               .+... .+.+++..|.|+.++++-..|.|.+.|.++++
T Consensus       857 DaRsce~~~E~kVcna---------------~~Pna-~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  857 DARSCEWTCELKVCNA---------------PGPNA-LTRAIAVADKGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             ecccccceeeEEeccC---------------CCCch-heeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence            9998764433321100               12222 48899999999999999999999999999965

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.57  E-value=5.9e-08  Score=102.48  Aligned_cols=206  Identities=17%  Similarity=0.223  Sum_probs=143.2

Q ss_pred             hhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745            5 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus         5 ~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      ...+++..++++.|+..-+|++|+.+.++|+.|+..|.|+++++.+|...... ..|..+|+-+.=+.++  ..+++.+.
T Consensus      1087 IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~dg--s~~Ltsss 1163 (1516)
T KOG1832|consen 1087 IFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVDG--STQLTSSS 1163 (1516)
T ss_pred             hHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-cccccccccccccCCc--ceeeeecc
Confidence            45678899999999999999999999999999999999999999999998888 7999999999988884  55555443


Q ss_pred             -CC-cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004745           85 -DA-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  162 (732)
Q Consensus        85 -dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  162 (732)
                       .. -..+|++..-.         .+.+.+.+    -.++.|+..- ..-+.|.......+||+++...+...       
T Consensus      1164 ~S~PlsaLW~~~s~~---------~~~Hsf~e----d~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~ty------- 1222 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTG---------GPRHSFDE----DKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTY------- 1222 (1516)
T ss_pred             ccCchHHHhcccccc---------Cccccccc----cceeehhhhH-HHHHhcccccceEEEecccCcHHHHh-------
Confidence             33 57799987521         22455543    3467777533 22333444456889999998754211       


Q ss_pred             ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004745          163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  242 (732)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (732)
                                    +.......+.-+...|+|+ ..+++   .||.  +||.+..+.++.+..             ..  
T Consensus      1223 --------------lt~~~~~~y~~n~a~FsP~-D~LIl---ndGv--LWDvR~~~aIh~FD~-------------ft-- 1267 (1516)
T KOG1832|consen 1223 --------------LTDTVTSSYSNNLAHFSPC-DTLIL---NDGV--LWDVRIPEAIHRFDQ-------------FT-- 1267 (1516)
T ss_pred             --------------cCcchhhhhhccccccCCC-cceEe---eCce--eeeeccHHHHhhhhh-------------he--
Confidence                          1111112223367889998 44553   4553  799998766554421             00  


Q ss_pred             cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       243 ~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                           .  -..-.|+|.|..++..+     .|||+++.+
T Consensus      1268 -----~--~~~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1268 -----D--YGGGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred             -----e--cccccccCCCceEEeec-----hhhhhHHHH
Confidence                 0  11236899999888865     589999954

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.55  E-value=7.5e-05  Score=75.24  Aligned_cols=235  Identities=13%  Similarity=0.129  Sum_probs=128.4

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeeEEEEccCCC------cCeEEEEEec
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSD----------DTHINVWSYSSRKLLHSIETGHS------ANVFCTKFVP   72 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~----------dg~i~vWd~~~~~~~~~~~~~h~------~~V~~~~~s~   72 (732)
                      .+.+.++..-..+- .+ +||||+.|.++..          +..|.|||+.+.+.+.++..+-+      .....++++|
T Consensus        37 ~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~  114 (352)
T TIGR02658        37 GRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP  114 (352)
T ss_pred             CEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC
Confidence            34444444322222 24 9999998776654          78999999999999998843211      2234788999


Q ss_pred             CCCCCEEEEEE-C-CCcEEEEEcCCCCCCCCCCCCCCCceeecc---------------------------ccCceeEE-
Q 004745           73 ETSDELVVSGA-G-DAEVRLFNLSRFSGRGLDDNAITPSALYQC---------------------------HTRRVKKL-  122 (732)
Q Consensus        73 ~~~g~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---------------------------h~~~v~~l-  122 (732)
                      +  |++|+... . +..|-+.|+.+.+-...-.. ..+...+..                           ++..+... 
T Consensus       115 d--gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~  191 (352)
T TIGR02658       115 D--NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPE  191 (352)
T ss_pred             C--CCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCC
Confidence            9  58887665 3 68899999986431100000 000000000                           00000000 


Q ss_pred             --------EEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecC
Q 004745          123 --------AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS  194 (732)
Q Consensus       123 --------~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  194 (732)
                              .|.+.++.++..... |.|.+-|+.......          ...+.+.+-...   ...-....+.-+++++
T Consensus       192 ~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~----------~~~~~~~~~~~~---~~~wrP~g~q~ia~~~  257 (352)
T TIGR02658       192 DEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF----------LPAIEAFTEAEK---ADGWRPGGWQQVAYHR  257 (352)
T ss_pred             ccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee----------cceeeecccccc---ccccCCCcceeEEEcC
Confidence                    112212233333333 666666654332110          000000000000   0000222334489999


Q ss_pred             CCCCEEEE-Ee---------CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EE
Q 004745          195 TRPHLLLV-GG---------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EV  263 (732)
Q Consensus       195 ~~~~~l~t-g~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l  263 (732)
                      ++ +.+++ ..         ..+.|.++|..+.+.+..+.                   -++   .+..++++||++ +|
T Consensus       258 dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-------------------vG~---~~~~iavS~Dgkp~l  314 (352)
T TIGR02658       258 AR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-------------------LGH---EIDSINVSQDAKPLL  314 (352)
T ss_pred             CC-CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-------------------CCC---ceeeEEECCCCCeEE
Confidence            94 55555 31         22579999999987665542                   112   488999999999 88


Q ss_pred             EEEe-cCCeEEEEECCCCCCcce
Q 004745          264 LLSY-SGEHVYLMDVNHAGGRAM  285 (732)
Q Consensus       264 ~~~~-~dg~v~iwd~~~~~~~~~  285 (732)
                      ++.. .++.|.++|..+.+....
T Consensus       315 yvtn~~s~~VsViD~~t~k~i~~  337 (352)
T TIGR02658       315 YALSTGDKTLYIFDAETGKELSS  337 (352)
T ss_pred             EEeCCCCCcEEEEECcCCeEEee
Confidence            8777 478999999999765443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.54  E-value=3.9e-07  Score=94.63  Aligned_cols=220  Identities=14%  Similarity=0.155  Sum_probs=142.4

Q ss_pred             EeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCee-EEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004745           13 RELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL   90 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~-~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v   90 (732)
                      ..+.||..+|+.+.|+|.. ..||+++.|-.|..||+..... +..+ ..-...-..++|+-.. ++ +.+.+..+.|++
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-~~w~s~asqVkwnyk~-p~-vlasshg~~i~v  184 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-SSWRSAASQVKWNYKD-PN-VLASSHGNDIFV  184 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-ecccccCceeeecccC-cc-hhhhccCCceEE
Confidence            4577999999999999854 5899999999999999987653 4444 3444556789998763 34 444566788999


Q ss_pred             EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004745           91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  170 (732)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  170 (732)
                      ||++.+.         .++..+++|...|+.++|.......+.+++.|++|+.||..........               
T Consensus       185 wd~r~gs---------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~---------------  240 (1081)
T KOG0309|consen  185 WDLRKGS---------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR---------------  240 (1081)
T ss_pred             EeccCCC---------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce---------------
Confidence            9999754         5688999999999999998765567889999999999998775421000               


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEEE-EEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                           .    .....+|..-.+-|-+..+++ ---.+..+.+++.++......   ....++.+..|       .||.+ 
T Consensus       241 -----~----vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n---~~~~~~pVh~F-------~GH~D-  300 (1081)
T KOG0309|consen  241 -----T----VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWN---VFDLNTPVHTF-------VGHDD-  300 (1081)
T ss_pred             -----e----ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhc---cccCCcceeee-------cCcch-
Confidence                 0    001123444444444211211 111122455555444321110   01112334444       66665 


Q ss_pred             cEEEEEEcCCC----------CEEEEEecCCeEEEEECCC
Q 004745          250 HLTHVTFSPNG----------EEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       250 ~i~~l~~sp~g----------~~l~~~~~dg~v~iwd~~~  279 (732)
                      .|....|-..+          -.|++=+.|..+++|-+.+
T Consensus       301 ~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  301 VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            35545554322          2689999999999998876

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.54  E-value=4.5e-05  Score=80.30  Aligned_cols=193  Identities=9%  Similarity=0.062  Sum_probs=113.2

Q ss_pred             ceeEEEEcCCCCE-EEEEeC---CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC--cEEEEEcC
Q 004745           21 CVNAISWNSKGSL-LISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLS   94 (732)
Q Consensus        21 ~V~~l~~s~dg~~-lasg~~---dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg--~i~vwd~~   94 (732)
                      .+..-.|+|||+. ++..+.   +..|.++|+.+++.....  ...+.+....|+|++ ..++++.+.++  .|.++|+.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPDG-~~la~~~~~~g~~~Iy~~dl~  265 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKDG-SKLLLTMAPKGQPDIYLYDTN  265 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCCC-CEEEEEEccCCCcEEEEEECC
Confidence            6778999999984 664443   356889999888765544  345556778899995 23444555444  46666776


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                      .+.           ...+..+........|+|++..++++....+  .|.+.|+.+++..                    
T Consensus       266 ~g~-----------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~--------------------  314 (419)
T PRK04043        266 TKT-----------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE--------------------  314 (419)
T ss_pred             CCc-----------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE--------------------
Confidence            532           2233333333345679997755555554444  4667777665421                    


Q ss_pred             ccccccCCCCCccceEEEEecCCCCCEEEEEeCC---------CeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                         .+... +.  .  ...|+|+ |+.|+.....         ..|.+.|+.++.. ..+.                   
T Consensus       315 ---rlt~~-g~--~--~~~~SPD-G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT-------------------  365 (419)
T PRK04043        315 ---QVVFH-GK--N--NSSVSTY-KNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLT-------------------  365 (419)
T ss_pred             ---eCccC-CC--c--CceECCC-CCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECC-------------------
Confidence               11111 11  1  1379999 5666655543         3678888876642 1110                   


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEecC-C--eEEEEECCC
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSYSG-E--HVYLMDVNH  279 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~~d-g--~v~iwd~~~  279 (732)
                      .+.   ......|+|||+.|+..+.+ +  .+.+.++..
T Consensus       366 ~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        366 ANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            010   12247899999988777653 2  466666655

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=2.1e-05  Score=79.94  Aligned_cols=196  Identities=12%  Similarity=0.144  Sum_probs=126.4

Q ss_pred             cCCceeEEEEcCCC--CEEEE-----EeCCCcEEEEeCCCCee-----EEEEccCCCcCeEEEEEecCCCCCEEEEE-EC
Q 004745           18 HQGCVNAISWNSKG--SLLIS-----GSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPETSDELVVSG-AG   84 (732)
Q Consensus        18 h~~~V~~l~~s~dg--~~las-----g~~dg~i~vWd~~~~~~-----~~~~~~~h~~~V~~~~~s~~~~g~~l~s~-~~   84 (732)
                      |...|+.+.+||.+  ..+|+     +|.-..|+||.......     .+.|   ....=..+.|.+.+.+-++++. .-
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF---Fkadkvqm~WN~~gt~LLvLastdV  240 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF---FKADKVQMKWNKLGTALLVLASTDV  240 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc---cccceeEEEeccCCceEEEEEEEee
Confidence            67889999999864  35553     35567899998762211     1222   1222246778877532222222 22


Q ss_pred             CC---------cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEE-EeCCCcEEEEECCCCCCCCC
Q 004745           85 DA---------EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCPP  154 (732)
Q Consensus        85 dg---------~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s-~s~dg~i~vwd~~~~~~~~~  154 (732)
                      |.         ++++.++...          .+...+. -.++|.++.|+|.+..+.+. |-.=-.+.|+|++-.-    
T Consensus       241 Dktn~SYYGEq~Lyll~t~g~----------s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~----  305 (566)
T KOG2315|consen  241 DKTNASYYGEQTLYLLATQGE----------SVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP----  305 (566)
T ss_pred             cCCCccccccceEEEEEecCc----------eEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE----
Confidence            33         4777777621          1133333 37899999999966433333 3344578899986532    


Q ss_pred             CCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC---CeEEEEECCCCCCCcccccCCCCCC
Q 004745          155 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPP  231 (732)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~  231 (732)
                                 ++++..|             +-+++-|+|. |++|+.+|.+   |.|-|||+.+.+.+.++..      
T Consensus       306 -----------v~df~eg-------------pRN~~~fnp~-g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a------  354 (566)
T KOG2315|consen  306 -----------VFDFPEG-------------PRNTAFFNPH-GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA------  354 (566)
T ss_pred             -----------eEeCCCC-------------CccceEECCC-CCEEEEeecCCCCCceEEEeccchhhcccccc------
Confidence                       3333332             4467889999 7788777764   7899999999877665421      


Q ss_pred             ccccccccccccCCCccccEEEEEEcCCCCEEEEEec------CCeEEEEECCC
Q 004745          232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNH  279 (732)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~------dg~v~iwd~~~  279 (732)
                                    .   .-+-+.|+|||+++++++.      |+.++||+...
T Consensus       355 --------------~---~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  355 --------------A---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             --------------C---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence                          1   2456899999999999976      68899999876

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.52  E-value=8.4e-06  Score=86.39  Aligned_cols=164  Identities=15%  Similarity=0.074  Sum_probs=94.8

Q ss_pred             cCCceeEEEEcCCCCEEEEEeC-----CCcEEEEeCCCC--eeEEEEccCCCcCeEEEEEecCCCCCEEEEEE-CCCcEE
Q 004745           18 HQGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVR   89 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~-----dg~i~vWd~~~~--~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~-~dg~i~   89 (732)
                      ..+.....+|||||+.||..+.     +-.+.+|++..+  .....+...+.......+|+|+  |+.|+..+ .+|...
T Consensus       229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD--G~~Laf~s~~~g~~~  306 (428)
T PRK01029        229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD--GTRLVFVSNKDGRPR  306 (428)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC--CCEEEEEECCCCCce
Confidence            3445567899999998886553     223445777653  2223332233344567899999  47666554 567666


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CC--CcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-ED--GTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      +|.+......       .....+..+...+....|+|++ +.|+..+ .+  ..|.+||+.+++..              
T Consensus       307 ly~~~~~~~g-------~~~~~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~--------------  364 (428)
T PRK01029        307 IYIMQIDPEG-------QSPRLLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDY--------------  364 (428)
T ss_pred             EEEEECcccc-------cceEEeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeE--------------
Confidence            6654321100       0123333444566788999976 5555443 33  36889998776521              


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEE-EeC--CCeEEEEECCCCC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGS--DAFARLYDRRMLP  218 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t-g~~--dg~v~iwd~~~~~  218 (732)
                               .+..   ....+....|+|+ ++.|+. +..  ...|+++|+..++
T Consensus       365 ---------~Lt~---~~~~~~~p~wSpD-G~~L~f~~~~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        365 ---------QLTT---SPENKESPSWAID-SLHLVYSAGNSNESELYLISLITKK  406 (428)
T ss_pred             ---------EccC---CCCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCC
Confidence                     1111   1123456889999 666654 332  3568888987654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.43  E-value=0.00064  Score=78.40  Aligned_cols=210  Identities=10%  Similarity=0.083  Sum_probs=130.6

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEE----eCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVW----SYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF   91 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vW----d~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw   91 (732)
                      ..+.|.++.|-++...|+.+..+|.|.+.    +..+..  .+.    .-+..|.+++||||+  .+|+....++++.+-
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG----~vd~GI~a~~WSPD~--Ella~vT~~~~l~~m  147 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG----SVDSGILAASWSPDE--ELLALVTGEGNLLLM  147 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE----EEcCcEEEEEECCCc--CEEEEEeCCCEEEEE
Confidence            34689999999999989999999999999    544432  333    346789999999994  888888888887765


Q ss_pred             EcC----C---------CC-----------CCCCCCCCCC--------Cc------eeeccccCceeEEEEecCCCcEEE
Q 004745           92 NLS----R---------FS-----------GRGLDDNAIT--------PS------ALYQCHTRRVKKLAVEVGNPHVVW  133 (732)
Q Consensus        92 d~~----~---------~~-----------~~~~~~~~~~--------~~------~~~~~h~~~v~~l~~~p~~~~~l~  133 (732)
                      +-.    .         +.           ..+.+....+        +.      ..+. +.+.-..|+|-.|+ .+||
T Consensus       148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG-~yFA  225 (928)
T PF04762_consen  148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG-EYFA  225 (928)
T ss_pred             eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC-cEEE
Confidence            322    0         00           0000000000        00      1122 34456778999855 8888


Q ss_pred             EEeC---C---CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC--
Q 004745          134 SASE---D---GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS--  205 (732)
Q Consensus       134 s~s~---d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~--  205 (732)
                      +.+-   .   ..+|||+-+ +...                       ...+  .-.+--.+++|-|. |++||+.-.  
T Consensus       226 Vss~~~~~~~~R~iRVy~Re-G~L~-----------------------stSE--~v~gLe~~l~WrPs-G~lIA~~q~~~  278 (928)
T PF04762_consen  226 VSSVEPETGSRRVIRVYSRE-GELQ-----------------------STSE--PVDGLEGALSWRPS-GNLIASSQRLP  278 (928)
T ss_pred             EEEEEcCCCceeEEEEECCC-ceEE-----------------------eccc--cCCCccCCccCCCC-CCEEEEEEEcC
Confidence            7664   2   478999865 3311                       0000  11112346899999 788888754  


Q ss_pred             -CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          206 -DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       206 -dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                       ...|.+|.-+..+ -..+..+                 ..+....|..+.|++++..|+....|. |.+|-..+..
T Consensus       279 ~~~~VvFfErNGLr-hgeF~l~-----------------~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  279 DRHDVVFFERNGLR-HGEFTLR-----------------FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             CCcEEEEEecCCcE-eeeEecC-----------------CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence             3456677654332 1112111                 112223589999999999999977654 9999888743

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.40  E-value=0.00011  Score=73.27  Aligned_cols=120  Identities=15%  Similarity=0.211  Sum_probs=95.4

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDT-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR   95 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg-~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~   95 (732)
                      +|...|.-..+.-+++-++.|..|| .+-|+|..+++... + ...-+.|.++..+|+  |++++.+.....|-+.|+.+
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~-e~~lg~I~av~vs~d--GK~~vvaNdr~el~vididn  432 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-I-EKDLGNIEAVKVSPD--GKKVVVANDRFELWVIDIDN  432 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-e-eCCccceEEEEEcCC--CcEEEEEcCceEEEEEEecC
Confidence            6888899999998988999999999 89999988876554 4 366788999999999  58899988888888889987


Q ss_pred             CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC----cEEEEECCCCCC
Q 004745           96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSS  151 (732)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg----~i~vwd~~~~~~  151 (732)
                      +..+          ..-+...+-|+.+.|+| +.++||-+--+|    .|+++|+..++.
T Consensus       433 gnv~----------~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         433 GNVR----------LIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             CCee----------EecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE
Confidence            5422          22234457799999999 558888776555    688999987653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=8e-06  Score=86.47  Aligned_cols=191  Identities=14%  Similarity=0.171  Sum_probs=128.1

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      .+.++|++++  ++.|+-|..+|.|++.+.... ....+  .|...        +..|.+++||+.||+|.|-.+-+.+.
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~~~~~--~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-PKTNF--DHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc-ccccc--ccccc--------ccCCceEEEecCCCcEEEeeccCCcc
Confidence            5677888887  678999999999999986533 22222  45443        33379999999999999998876432


Q ss_pred             CCCCCCCCCCceeeccccCceeEEEEecC----CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745           99 RGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus        99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                                ...+. ...++.+++++|+    ..+.+++|+.-| +.++.-+=....                      
T Consensus       106 ----------~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk----------------------  151 (846)
T KOG2066|consen  106 ----------ITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK----------------------  151 (846)
T ss_pred             ----------ceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc----------------------
Confidence                      22222 3568999999996    346788999888 766643211100                      


Q ss_pred             ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  254 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  254 (732)
                      ..+ ......++|.++.|.   |+++|-+..+| |+|||..+.+.+..++.+...++.               ......+
T Consensus       152 ~~v-~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~---------------e~fpphl  211 (846)
T KOG2066|consen  152 DSV-VLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP---------------ELFPPHL  211 (846)
T ss_pred             cce-eeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc---------------ccCCCce
Confidence            000 122345699999998   66888887665 999999998877665433211111               1123457


Q ss_pred             EEcCCCCEEEEEecCCeEEEEECC
Q 004745          255 TFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       255 ~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                      .|.++.+ |+.|-.| +|+|..++
T Consensus       212 ~W~~~~~-LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  212 HWQDEDR-LVIGWGD-SVKICSIK  233 (846)
T ss_pred             EecCCCe-EEEecCC-eEEEEEEe
Confidence            8887764 7777666 78888887

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.36  E-value=4.1e-06  Score=78.40  Aligned_cols=238  Identities=17%  Similarity=0.250  Sum_probs=139.8

Q ss_pred             CceeEEEEcCCCC--EEEEEeCCCcEEEEeCCCCe-------------------------------------eE----EE
Q 004745           20 GCVNAISWNSKGS--LLISGSDDTHINVWSYSSRK-------------------------------------LL----HS   56 (732)
Q Consensus        20 ~~V~~l~~s~dg~--~lasg~~dg~i~vWd~~~~~-------------------------------------~~----~~   56 (732)
                      ..|+.+.|..++.  .++..+.|.+|++|.+....                                     .+    ++
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r  165 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR  165 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence            4688888886542  44455678999999875320                                     00    00


Q ss_pred             -EccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEE
Q 004745           57 -IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA  135 (732)
Q Consensus        57 -~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  135 (732)
                       ....|.--|++++|..+.  ..+++ +.|=+|.+|++....+.-. ....+| ..+......|++..|+|...+.+.-.
T Consensus       166 vyaNaH~yhiNSiS~NsD~--et~lS-aDdLrINLWnl~i~D~sFn-IVDiKP-~nmeeLteVItSaeFhp~~cn~fmYS  240 (460)
T COG5170         166 VYANAHPYHINSISFNSDK--ETLLS-ADDLRINLWNLEIIDGSFN-IVDIKP-HNMEELTEVITSAEFHPEMCNVFMYS  240 (460)
T ss_pred             eccccceeEeeeeeecCch--heeee-ccceeeeeccccccCCceE-EEeccC-ccHHHHHHHHhhcccCHhHcceEEEe
Confidence             113577778999999883  56665 4588899999987543210 000111 12223345789999999877777777


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004745          136 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  215 (732)
Q Consensus       136 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~  215 (732)
                      +..|.|++-|+++...+.....        ++.+.-. ........+-...|..+.|+++ |+++++-. --+|+|||.+
T Consensus       241 sSkG~Ikl~DlRq~alcdn~~k--------lfe~~~D-~v~~~ff~eivsSISD~kFs~n-gryIlsRd-yltvkiwDvn  309 (460)
T COG5170         241 SSKGEIKLNDLRQSALCDNSKK--------LFELTID-GVDVDFFEEIVSSISDFKFSDN-GRYILSRD-YLTVKIWDVN  309 (460)
T ss_pred             cCCCcEEehhhhhhhhccCchh--------hhhhccC-cccchhHHHHhhhhcceEEcCC-CcEEEEec-cceEEEEecc
Confidence            8889999999997765411100        0000000 0011112223447889999998 77777655 4689999998


Q ss_pred             CCC-CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          216 MLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       216 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ..+ ++.++..     .|...-...... ....-..-..+.|+-+.+.+++|+..+..-||-..+
T Consensus       310 m~k~pikTi~~-----h~~l~~~l~d~Y-EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         310 MAKNPIKTIPM-----HCDLMDELNDVY-ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             cccCCceeech-----HHHHHHHHHhhh-hccceeeeEEEEecCCcccccccccccceeeecccc
Confidence            754 3333211     010000000000 000000123578899999999999998888887554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.33  E-value=3.8e-06  Score=87.19  Aligned_cols=213  Identities=13%  Similarity=0.192  Sum_probs=140.6

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee---------------EEEEccCCCcCeEEEEEecCCCCCEEEEE
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---------------LHSIETGHSANVFCTKFVPETSDELVVSG   82 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~---------------~~~~~~~h~~~V~~~~~s~~~~g~~l~s~   82 (732)
                      .+....|+.|+....++|+|+.||.++|-.+.+...               -+++ .||.+.|.-+.|..+  .+.|-|+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~--~QKLTtS   89 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNEN--NQKLTTS   89 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEeccc--ccccccc
Confidence            356678999999999999999999999998764321               1223 699999999999988  3889999


Q ss_pred             ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004745           83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  162 (732)
Q Consensus        83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  162 (732)
                      ..+|.|.||-+-.++...        -......+..|.++.|+.++ ..|...-.||.|.+=.+....            
T Consensus        90 Dt~GlIiVWmlykgsW~E--------EMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNR------------  148 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCE--------EMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNR------------  148 (1189)
T ss_pred             CCCceEEEEeeecccHHH--------HHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccce------------
Confidence            999999999988654211        11222345679999999955 788888899998887765543            


Q ss_pred             ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004745          163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  242 (732)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (732)
                         +|+..         .  .......+.|++| .+.++.+-.+|.+.+||.+..-.+ ++..     .|....... ..
T Consensus       149 ---IwgKe---------L--kg~~l~hv~ws~D-~~~~Lf~~ange~hlydnqgnF~~-Kl~~-----~c~Vn~tg~-~s  206 (1189)
T KOG2041|consen  149 ---IWGKE---------L--KGQLLAHVLWSED-LEQALFKKANGETHLYDNQGNFER-KLEK-----DCEVNGTGI-FS  206 (1189)
T ss_pred             ---ecchh---------c--chheccceeeccc-HHHHHhhhcCCcEEEecccccHHH-hhhh-----ceEEeeeee-ec
Confidence               22211         0  1113457889998 667777778899999997643211 1100     111000000 00


Q ss_pred             cCCCccccEEEEEE--------cCCCCEEEEEecCCeEEEEECCC
Q 004745          243 EHGRSSLHLTHVTF--------SPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       243 ~~~~~~~~i~~l~~--------sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ..++   .|..+.|        -|+...|+++-..|.+.|..-.+
T Consensus       207 ~~~~---kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN  248 (1189)
T KOG2041|consen  207 NFPT---KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN  248 (1189)
T ss_pred             CCCc---cccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence            0011   1333443        35788899999999888876555

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.33  E-value=7.5e-05  Score=68.87  Aligned_cols=198  Identities=13%  Similarity=0.036  Sum_probs=128.8

Q ss_pred             EEEEeCCCcEEEEeCCCCeeEEEEccCCC--cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce-
Q 004745           34 LISGSDDTHINVWSYSSRKLLHSIETGHS--ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA-  110 (732)
Q Consensus        34 lasg~~dg~i~vWd~~~~~~~~~~~~~h~--~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-  110 (732)
                      +..++.|.++++.++.-+.....+   |.  -.+++++++++  +.++++.+....|..|.+.......        +. 
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~--------~~~  197 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAV---HNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYI--------ENI  197 (344)
T ss_pred             eeeccCCcceeEEEEecCccccee---eccccceeeeEEcCC--CceEEEecCCCcceEEEeCCcccee--------eee
Confidence            555677888888877644332222   22  23889999999  5899999999999999998644322        22 


Q ss_pred             eeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEE
Q 004745          111 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  190 (732)
Q Consensus       111 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  190 (732)
                      ......+.-.+..|+..+ ..+|++..||++.|||++....+-.                    ..-...+.|.+.+..+
T Consensus       198 ~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tpm~--------------------~~sstrp~hnGa~R~c  256 (344)
T KOG4532|consen  198 YEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATPMA--------------------EISSTRPHHNGAFRVC  256 (344)
T ss_pred             EecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecccccchh--------------------hhcccCCCCCCceEEE
Confidence            333445566778888844 8999999999999999988653210                    0112234588899999


Q ss_pred             EecCCCCC-EEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC
Q 004745          191 DISSTRPH-LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG  269 (732)
Q Consensus       191 ~~~~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d  269 (732)
                      .|++.+.- +|...-.=+.+.+-|+++.+..+.+.-            +... +..|....|..-.|+.++..+.+.+.+
T Consensus       257 ~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i------------~~d~-~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  257 RFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI------------PDDV-ERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             EecCCCcceEEEEecCcceEEEEEcccCceeeEEec------------Cccc-cccccccccccccccCCCcccccccch
Confidence            99975322 344433346899999999865433211            1111 122333347788888888777777665


Q ss_pred             CeEEEEECCC
Q 004745          270 EHVYLMDVNH  279 (732)
Q Consensus       270 g~v~iwd~~~  279 (732)
                       .+.-|++.+
T Consensus       324 -~~ae~ni~s  332 (344)
T KOG4532|consen  324 -QGAEYNILS  332 (344)
T ss_pred             -hhheeeccc
Confidence             455566665

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.33  E-value=1e-06  Score=83.70  Aligned_cols=147  Identities=10%  Similarity=0.037  Sum_probs=105.4

Q ss_pred             CCCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccc----cccceeEeeeccccceeeecc
Q 004745          527 DEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETV----IDMKQRYVGHCNVGTDIKQAS  602 (732)
Q Consensus       527 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~gh~~~~~~i~~~~  602 (732)
                      +.+..+-+-++.+..-..+. ...+|.++.|.-.+..+..|+-++..-+++....    ....+.+. |...++++..+.
T Consensus       231 G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq  308 (425)
T KOG2695|consen  231 GLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQ  308 (425)
T ss_pred             cccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhc
Confidence            33444445555555555555 5677899999988888888843333333544332    33444443 777888888777


Q ss_pred             cccCCCCEEEEecCCCcEEEEEcCcccE---EEEEecCcccEEEEeec--CCCCeEEEecCCCcEEEEcCCCCCCccccC
Q 004745          603 FLGQRGDYIASGSDDGRWFIWEKQTGRL---IKMLLGDEAVVNCVQCH--PFDCVVATSGIDNTIKIWTPSASVPSIVSG  677 (732)
Q Consensus       603 f~s~dg~~lasgs~Dg~i~iWd~~tg~~---~~~l~gH~~~V~~v~fs--p~~~~l~S~s~D~~i~vW~~~~~~~~~~~~  677 (732)
                      |   ++++|++.+-+|+|++||.+--++   +.+..||...-.-+-++  +....++++|.|...|||.++.+..+.+..
T Consensus       309 ~---s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  309 F---SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             c---ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            7   679999999999999999987777   99999996544433333  455689999999999999999999888765


Q ss_pred             C
Q 004745          678 G  678 (732)
Q Consensus       678 g  678 (732)
                      -
T Consensus       386 f  386 (425)
T KOG2695|consen  386 F  386 (425)
T ss_pred             C
Confidence            3

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.31  E-value=4.3e-06  Score=76.47  Aligned_cols=74  Identities=19%  Similarity=0.322  Sum_probs=59.8

Q ss_pred             ceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCEEE
Q 004745          186 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVL  264 (732)
Q Consensus       186 ~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~  264 (732)
                      .|++++-+|...+++++|+.||.+-+||.++......+            +       ..|.. +|+.+-|+| ++..|+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~------------l-------~ahk~-~i~eV~FHpk~p~~Lf  240 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL------------L-------KAHKA-EIWEVHFHPKNPEHLF  240 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH------------H-------HHhhh-hhhheeccCCCchhee
Confidence            48888889987888999999999999999986322111            1       33444 599999999 678999


Q ss_pred             EEecCCeEEEEECCC
Q 004745          265 LSYSGEHVYLMDVNH  279 (732)
Q Consensus       265 ~~~~dg~v~iwd~~~  279 (732)
                      +++.||.+.-||..+
T Consensus       241 t~sedGslw~wdas~  255 (319)
T KOG4714|consen  241 TCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCcEEEEcCCC
Confidence            999999999999886

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.31  E-value=8.2e-05  Score=74.00  Aligned_cols=173  Identities=13%  Similarity=0.099  Sum_probs=127.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC-cEEEEEcCCCCCCCCCCCCCCC
Q 004745           30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-EVRLFNLSRFSGRGLDDNAITP  108 (732)
Q Consensus        30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~  108 (732)
                      +|.+++..|. |.+.|.+...+-.+.   .+|.+.|.-..+..+.  +-++.|..|| .+-|+|.+++.           
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e-----------  393 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGE-----------  393 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEE---cCCCCceEEEEEccCC--cceEEeccCCceEEEEecCCce-----------
Confidence            6888888875 788888877665553   4788889888888874  6788899998 89999999743           


Q ss_pred             ceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceE
Q 004745          109 SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK  188 (732)
Q Consensus       109 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  188 (732)
                      +..+.+.-+.|.++..+|++ +.++.+.....|.+.|+.++...             +.            -.....-|+
T Consensus       394 ~kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~-------------~i------------dkS~~~lIt  447 (668)
T COG4946         394 VKRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVR-------------LI------------DKSEYGLIT  447 (668)
T ss_pred             EEEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCee-------------Ee------------cccccceeE
Confidence            46666777899999999955 88888888888999999988631             11            112345789


Q ss_pred             EEEecCCCCCEEEEEeCCC----eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEE
Q 004745          189 SCDISSTRPHLLLVGGSDA----FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL  264 (732)
Q Consensus       189 ~i~~~~~~~~~l~tg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~  264 (732)
                      .+.|+|+ ++++|-+--+|    .|+++|+..++......                  +.++    =.+-+|.|++++|+
T Consensus       448 df~~~~n-sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT------------------~ta~----DfsPaFD~d~ryLY  504 (668)
T COG4946         448 DFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT------------------PTAY----DFSPAFDPDGRYLY  504 (668)
T ss_pred             EEEEcCC-ceeEEEecCcceeeeeEEEEecCCCeEEEecC------------------Cccc----ccCcccCCCCcEEE
Confidence            9999999 88999887665    58999999875332110                  0111    23458899999887


Q ss_pred             EEec
Q 004745          265 LSYS  268 (732)
Q Consensus       265 ~~~~  268 (732)
                      --+.
T Consensus       505 fLs~  508 (668)
T COG4946         505 FLSA  508 (668)
T ss_pred             EEec
Confidence            6654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=1.4e-05  Score=78.79  Aligned_cols=249  Identities=14%  Similarity=0.086  Sum_probs=158.3

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeeEEEEccC-CCcCeEEEEEecCCCCCEEE-EEECCC
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELVV-SGAGDA   86 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~-dg~i~vWd~~~~~~~~~~~~~-h~~~V~~~~~s~~~~g~~l~-s~~~dg   86 (732)
                      +.+..+..|...|..++.+-+|.++.|++. |..++++|+.+-..+..+... -.+.+ ++..+|...-..|+ +.-.++
T Consensus        44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg  122 (558)
T KOG0882|consen   44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSG  122 (558)
T ss_pred             eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCC
Confidence            345556678888999999999999999877 999999998876544332111 11222 12222221001333 334578


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCCCCCCCCCcccceE
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCPPAGSSHQECRNI  165 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~  165 (732)
                      .+.|+|-.....+        ....-.-|..+|..+.+.|.+ +.+++....|.|.-|..... +.+         ....
T Consensus       123 ~i~VvD~~~d~~q--------~~~fkklH~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfP---------r~~l  184 (558)
T KOG0882|consen  123 KIFVVDGFGDFCQ--------DGYFKKLHFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFP---------RTNL  184 (558)
T ss_pred             CcEEECCcCCcCc--------cceecccccCceEEEEeeccc-cceeeccccceeEeecCCCcccCc---------cccc
Confidence            9999997753222        134445689999999999954 88889888999999998741 110         0111


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccc--ccccc--c
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY--FCPMH--L  241 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~  241 (732)
                      .|.++.  ...+...+.......++.|+|+ +..+.+-+.|..||+++.++++.++.+........+...  +...+  +
T Consensus       185 ~~~~K~--eTdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Vel  261 (558)
T KOG0882|consen  185 NFELKH--ETDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVEL  261 (558)
T ss_pred             cccccc--cchhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeeh
Confidence            222221  1233444556667889999999 789999999999999999999877666543322111110  00000  0


Q ss_pred             c--------cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          242 S--------EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       242 ~--------~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      .        ...|....-+.+.|...|++|+-++-= -|++.++.+..
T Consensus       262 gRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~  308 (558)
T KOG0882|consen  262 GRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNT  308 (558)
T ss_pred             hhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCe
Confidence            0        011333345778999999999988765 47889998844

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=5.4e-05  Score=73.87  Aligned_cols=87  Identities=11%  Similarity=0.239  Sum_probs=75.1

Q ss_pred             ccccEeeeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745            9 LSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      ++....+.+|...|..++|||..+ +|..++.+.+|+|.|+++..++..+ ..| ..+.+++|.-++ .++|+.|...|.
T Consensus       183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDlde-~h~IYaGl~nG~  259 (463)
T KOG1645|consen  183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLDE-RHVIYAGLQNGM  259 (463)
T ss_pred             cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccCC-cceeEEeccCce
Confidence            344557778999999999999877 7888999999999999999998888 566 789999999986 588999999999


Q ss_pred             EEEEEcCCCCC
Q 004745           88 VRLFNLSRFSG   98 (732)
Q Consensus        88 i~vwd~~~~~~   98 (732)
                      |.|||++...+
T Consensus       260 VlvyD~R~~~~  270 (463)
T KOG1645|consen  260 VLVYDMRQPEG  270 (463)
T ss_pred             EEEEEccCCCc
Confidence            99999997543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=1.3e-05  Score=78.98  Aligned_cols=224  Identities=13%  Similarity=0.073  Sum_probs=143.5

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC--C-eeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-CCcEEEEEc
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--R-KLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNL   93 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~--~-~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg~i~vwd~   93 (732)
                      |.+-|+.+.-+ -.+++.+++.||.++.|....  + +.+..+ ..|-..|.+++.+-+  |.++.|.+. |..++++|+
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhF-raHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHF-RAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhh-HHHHHHHHhhhcccc--ceeEeeccCcccceeEEEe
Confidence            77777776554 357999999999999997543  2 344445 578889999999988  588888777 999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC--cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      .......        ...+..-.+.+..+ .+|.+.  .+.++.-.++.+.++|-......                   
T Consensus        84 En~Dmin--------miKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-------------------  135 (558)
T KOG0882|consen   84 ENFDMIN--------MIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-------------------  135 (558)
T ss_pred             eccchhh--------hcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCc-------------------
Confidence            8643210        11111122222211 222111  23334456788999996654321                   


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCC-CcccccCCCCCCccccccccccccCCCccc
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                          ...+...|..+|..+.+++. +..+++....|.|.-|.... .+. ...+....+...        .+..-.....
T Consensus       136 ----~~~fkklH~sPV~~i~y~qa-~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT--------dLy~f~K~Kt  202 (558)
T KOG0882|consen  136 ----DGYFKKLHFSPVKKIRYNQA-GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET--------DLYGFPKAKT  202 (558)
T ss_pred             ----cceecccccCceEEEEeecc-ccceeeccccceeEeecCCCcccCccccccccccccc--------hhhccccccc
Confidence                22233346668999999998 77899998899999998873 110 000110001000        0111111122


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCccee
Q 004745          250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR  286 (732)
Q Consensus       250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~  286 (732)
                      ..+++.|+|+|..+.+-+.|..|+++++++++..+.+
T Consensus       203 ~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  203 EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             CccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            4788999999999999999999999999998755443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.23  E-value=3.1e-05  Score=83.15  Aligned_cols=185  Identities=16%  Similarity=0.188  Sum_probs=130.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004745           30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  109 (732)
Q Consensus        30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  109 (732)
                      ++..++-|+--..+..+|+.+.+..+.. .-....|+-+...    ++++.+|...|+|.+-|+++.          +.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~----------~~i  210 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRYN----NRNLFCGDTRGTVFLRDPNSF----------ETI  210 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeee-eccCCceEEEEec----CcEEEeecccceEEeecCCcC----------cee
Confidence            3456777777778888999988877665 2223335555443    378999999999999999863          458


Q ss_pred             eeeccccCceeEEEEecCCCcEEEEEeC---------CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCC
Q 004745          110 ALYQCHTRRVKKLAVEVGNPHVVWSASE---------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  180 (732)
Q Consensus       110 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (732)
                      +++.+|++.|.++...   +++|++||.         |..|+|||++..+.+..+                      ..+
T Consensus       211 ht~~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI----------------------~~~  265 (1118)
T KOG1275|consen  211 HTFDAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI----------------------QFP  265 (1118)
T ss_pred             eeeeccccceeeeecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCc----------------------ccc
Confidence            9999999999988874   488888874         567899999988754221                      111


Q ss_pred             CCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC
Q 004745          181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  259 (732)
Q Consensus       181 ~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~  259 (732)
                      .+    -.-+.|.|.-...+++++..|...+-|..+.. +...          +..        ....+..+..+.++++
T Consensus       266 ~~----P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~----------~~~--------v~p~~s~i~~fDiSsn  323 (1118)
T KOG1275|consen  266 YG----PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAG----------VKM--------VNPNGSGISAFDISSN  323 (1118)
T ss_pred             cC----chhhhhcccccceEEEEecccceeeccccccCCCccc----------eeE--------EccCCCcceeEEecCC
Confidence            11    12345667666789999999999999854321 1000          000        1111223899999999


Q ss_pred             CCEEEEEecCCeEEEEE
Q 004745          260 GEEVLLSYSGEHVYLMD  276 (732)
Q Consensus       260 g~~l~~~~~dg~v~iwd  276 (732)
                      |+.++.|..+|.|.+|.
T Consensus       324 ~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  324 GDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CceEEEecccCcEeeec
Confidence            99999999999999997

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.20  E-value=2.9e-06  Score=80.72  Aligned_cols=124  Identities=15%  Similarity=0.236  Sum_probs=96.3

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN   92 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~-----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd   92 (732)
                      -++.|.++.|...++++..|..+|.|.+.|++..     .+...+  -|...|+++.....+ +++|++.+-+|+|++||
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtslq~Lq~s-~q~LmaS~M~gkikLyD  327 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSLQILQFS-QQKLMASDMTGKIKLYD  327 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhhhhhccc-cceEeeccCcCceeEee
Confidence            3567888899988999999999999999999754     455566  699999999888743 58999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCceeeccccCceeEEE--EecCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004745           93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLA--VEVGNPHVVWSASEDGTLRQHDFRQGSSC  152 (732)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~p~~~~~l~s~s~dg~i~vwd~~~~~~~  152 (732)
                      ++.-+..       .-+..+.||...-.-+-  ..+ ....+++++.|...|||.+..+..+
T Consensus       328 ~R~~K~~-------~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  328 LRATKCK-------KSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLL  381 (425)
T ss_pred             ehhhhcc-------cceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCcee
Confidence            9864332       22777888865433333  334 3467888999999999999988743

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.00018  Score=76.66  Aligned_cols=166  Identities=14%  Similarity=0.178  Sum_probs=112.6

Q ss_pred             eeeccCCceeEEEEcCC-------------CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecC---CCCC
Q 004745           14 ELEGHQGCVNAISWNSK-------------GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE---TSDE   77 (732)
Q Consensus        14 ~l~~h~~~V~~l~~s~d-------------g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~---~~g~   77 (732)
                      .|..|.+.|.-..+..+             |.+++||+.||+|.|-.+.+.+....+  ....++.+++++|+   ...+
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk  130 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSK  130 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhh
Confidence            34457777766665544             999999999999999999888877766  46678999999997   1126


Q ss_pred             EEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004745           78 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  157 (732)
Q Consensus        78 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  157 (732)
                      .+++|+..| +.++.-.-...+       . ...+..-.++|.++.|.   ++++|-++.+| |++||+.+++.+.....
T Consensus       131 ~fv~GG~ag-lvL~er~wlgnk-------~-~v~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  131 QFVSGGMAG-LVLSERNWLGNK-------D-SVVLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             heeecCcce-EEEehhhhhcCc-------c-ceeeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCC
Confidence            899999888 777653321111       1 11345567899999995   48998888776 99999998875432222


Q ss_pred             CCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004745          158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  216 (732)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~  216 (732)
                      .+...                   .....-..+.|.++  ..|+.|-. .+|+|..++.
T Consensus       198 p~~~~-------------------R~e~fpphl~W~~~--~~LVIGW~-d~v~i~~I~~  234 (846)
T KOG2066|consen  198 PSQSV-------------------RPELFPPHLHWQDE--DRLVIGWG-DSVKICSIKK  234 (846)
T ss_pred             CCCCC-------------------CcccCCCceEecCC--CeEEEecC-CeEEEEEEec
Confidence            21110                   11112235677765  46777654 4799998883

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.12  E-value=6.9e-05  Score=80.56  Aligned_cols=167  Identities=16%  Similarity=0.183  Sum_probs=116.5

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC----
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD----   85 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d----   85 (732)
                      +..+...--...|+-|+.  ++++|.+|...|+|.+-|..+.+.++++ ..|.+.|.++...    |++|++|+..    
T Consensus       168 ~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~-~aHs~siSDfDv~----GNlLitCG~S~R~~  240 (1118)
T KOG1275|consen  168 KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTF-DAHSGSISDFDVQ----GNLLITCGYSMRRY  240 (1118)
T ss_pred             eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeee-eccccceeeeecc----CCeEEEeecccccc
Confidence            333333333444555554  5789999999999999999999999999 8999999887654    5789999764    


Q ss_pred             -----CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004745           86 -----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        86 -----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  160 (732)
                           .-|+|||++....          +..+.-+.++ .-+.|+|.-...++.++..|...+-|..+-....       
T Consensus       241 ~l~~D~FvkVYDLRmmra----------l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-------  302 (1118)
T KOG1275|consen  241 NLAMDPFVKVYDLRMMRA----------LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-------  302 (1118)
T ss_pred             cccccchhhhhhhhhhhc----------cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc-------
Confidence                 4589999997432          2222223332 4567888777788899999999999844332110       


Q ss_pred             ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004745          161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  216 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~  216 (732)
                      . ....+.             .....+.++.++++ +..++.|..+|.|.+|.-+.
T Consensus       303 ~-~~~~v~-------------p~~s~i~~fDiSsn-~~alafgd~~g~v~~wa~~~  343 (1118)
T KOG1275|consen  303 A-GVKMVN-------------PNGSGISAFDISSN-GDALAFGDHEGHVNLWADRP  343 (1118)
T ss_pred             c-ceeEEc-------------cCCCcceeEEecCC-CceEEEecccCcEeeecCCC
Confidence            0 000000             11224889999998 88999999999999998443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.11  E-value=0.00015  Score=83.39  Aligned_cols=218  Identities=17%  Similarity=0.155  Sum_probs=131.9

Q ss_pred             cCCceeEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcE
Q 004745           18 HQGCVNAISWNSKGSLLISGSD------DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEV   88 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~------dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i   88 (732)
                      +.+.-..|+|-.||+++|+.+-      -+.+|||+-+ |....+- ..-.+--.+++|-|.  |++|++.-.   ...|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPs--G~lIA~~q~~~~~~~V  283 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPS--GNLIASSQRLPDRHDV  283 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCC--CCEEEEEEEcCCCcEE
Confidence            5566778999999999998864      2579999944 6544433 344444567899999  588888764   3446


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      .+|.-..   ...    .+....+......|..+.|++++ .+||..-.|. |.+|-..+..                |-
T Consensus       284 vFfErNG---Lrh----geF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYH----------------WY  338 (928)
T PF04762_consen  284 VFFERNG---LRH----GEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYH----------------WY  338 (928)
T ss_pred             EEEecCC---cEe----eeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCE----------------EE
Confidence            6665432   110    01111122345678999999955 8888877654 9999887654                11


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC----CCCCC------------------ccccc-
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR----MLPPL------------------TSCQK-  225 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~----~~~~~------------------~~~~~-  225 (732)
                      ++.    .+...  ....+..+.|+|.....|...+.+|.+..++..    .....                  ..+.. 
T Consensus       339 LKq----ei~~~--~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a  412 (928)
T PF04762_consen  339 LKQ----EIRFS--SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRA  412 (928)
T ss_pred             EEE----EEEcc--CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccccc
Confidence            110    01110  111233478888777777777776666554432    11100                  00000 


Q ss_pred             CCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          226 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ..+||-|...+         .-..+|..++|++++..+++-..||.|.+|....
T Consensus       413 ~VPPPMs~~~l---------~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  413 VVPPPMSSYEL---------ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             CCCchHhceEE---------cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence            11222222221         1123699999999998899999999999998665

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.07  E-value=0.00044  Score=66.25  Aligned_cols=231  Identities=14%  Similarity=0.145  Sum_probs=116.6

Q ss_pred             cEeeeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004745           12 ERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL   90 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v   90 (732)
                      .+.+.+-.+.+..++|+|+.. ++++....+.|...+. +|+.+.++.-.-.+...+|++..+  +.++++.-.++.+.+
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~--~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN--GRYVLSEERDQRLYI   90 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST--TEEEEEETTTTEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC--CEEEEEEcCCCcEEE
Confidence            356777777899999999755 5566667788888886 578887774333466889999876  455565545899999


Q ss_pred             EEcCCCCCCCCCCCCCC--CceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           91 FNLSRFSGRGLDDNAIT--PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        91 wd~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      +++........ .....  .+.....++..+-.++|.|.+.++++ +-+..-..++.+.....       ...  .....
T Consensus        91 ~~~~~~~~~~~-~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~-------~~~--~~~~~  159 (248)
T PF06977_consen   91 FTIDDDTTSLD-RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPG-------GFD--LFVSD  159 (248)
T ss_dssp             EEE----TT---EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT--------SS----EEEE
T ss_pred             EEEeccccccc-hhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccC-------ccc--eeecc
Confidence            99854221110 00000  00111134556899999996655554 45555566766654110       000  00000


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                      .     ..+.........+.+++++|..+++++.......|..+| .+++.+..+......          +-  ..+.-
T Consensus       160 ~-----~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~----------~g--l~~~~  221 (248)
T PF06977_consen  160 D-----QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF----------HG--LSKDI  221 (248)
T ss_dssp             ------HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG----------GG---SS--
T ss_pred             c-----cccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc----------cC--ccccc
Confidence            0     000101112235788999999888999998999999999 455544433211100          00  00011


Q ss_pred             ccEEEEEEcCCCCEEEEEecCCeEEEE
Q 004745          249 LHLTHVTFSPNGEEVLLSYSGEHVYLM  275 (732)
Q Consensus       249 ~~i~~l~~sp~g~~l~~~~~dg~v~iw  275 (732)
                      ...-.|+|.++|+ |+..+.-+..++|
T Consensus       222 ~QpEGIa~d~~G~-LYIvsEpNlfy~f  247 (248)
T PF06977_consen  222 PQPEGIAFDPDGN-LYIVSEPNLFYRF  247 (248)
T ss_dssp             -SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred             CCccEEEECCCCC-EEEEcCCceEEEe
Confidence            1366799999996 6666666666665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.04  E-value=0.0017  Score=63.61  Aligned_cols=189  Identities=14%  Similarity=0.159  Sum_probs=116.8

Q ss_pred             eeEEEEc-CCCCEEEEEeCCCcEEEEeCCCCeeEEEEcc---C-CCcCeEEEEEecCCCCCEEEEEECC--------CcE
Q 004745           22 VNAISWN-SKGSLLISGSDDTHINVWSYSSRKLLHSIET---G-HSANVFCTKFVPETSDELVVSGAGD--------AEV   88 (732)
Q Consensus        22 V~~l~~s-~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~---~-h~~~V~~~~~s~~~~g~~l~s~~~d--------g~i   88 (732)
                      ...+++. +++.++++ ... .+.++|+.+++.......   . .....+.+++.|+  |++.++....        |.|
T Consensus        42 ~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEE
T ss_pred             CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccce
Confidence            6677777 67655554 444 466669998865444321   1 3466899999999  5777776644        445


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      ..++.. ++           +..+...-...+.|+|+|++..++++-+..+.|..+++......       ......+.+
T Consensus       118 ~~~~~~-~~-----------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~-------~~~~~~~~~  178 (246)
T PF08450_consen  118 YRIDPD-GK-----------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE-------LSNRRVFID  178 (246)
T ss_dssp             EEEETT-SE-----------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC-------EEEEEEEEE
T ss_pred             EEECCC-Ce-----------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccc-------eeeeeeEEE
Confidence            556655 11           23333345667899999977556667788889999998654310       001111222


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                      +.           ......-.+++..+ |++.++....+.|.++|.+ ++.+..+..                    ...
T Consensus       179 ~~-----------~~~g~pDG~~vD~~-G~l~va~~~~~~I~~~~p~-G~~~~~i~~--------------------p~~  225 (246)
T PF08450_consen  179 FP-----------GGPGYPDGLAVDSD-GNLWVADWGGGRIVVFDPD-GKLLREIEL--------------------PVP  225 (246)
T ss_dssp             -S-----------SSSCEEEEEEEBTT-S-EEEEEETTTEEEEEETT-SCEEEEEE---------------------SSS
T ss_pred             cC-----------CCCcCCCcceEcCC-CCEEEEEcCCCEEEEECCC-ccEEEEEcC--------------------CCC
Confidence            11           11234678999998 7888888889999999988 655444321                    111


Q ss_pred             ccEEEEEEc-CCCCEEEEEe
Q 004745          249 LHLTHVTFS-PNGEEVLLSY  267 (732)
Q Consensus       249 ~~i~~l~~s-p~g~~l~~~~  267 (732)
                       .+++++|- |+.+.|++.+
T Consensus       226 -~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  226 -RPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -SEEEEEEESTTSSEEEEEE
T ss_pred             -CEEEEEEECCCCCEEEEEe
Confidence             48999994 6767776654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.03  E-value=0.0013  Score=64.59  Aligned_cols=215  Identities=12%  Similarity=0.066  Sum_probs=126.1

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEe-cCCCCCEEEEEECCCcEEEEEcCCCCCCCC
Q 004745           24 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV-PETSDELVVSGAGDAEVRLFNLSRFSGRGL  101 (732)
Q Consensus        24 ~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s-~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~  101 (732)
                      +..|.+ ++.++++--..+.|..|+..+++..... ...   ...+.+. ++   ..|+.+...+ +.++|+.+++..  
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~---g~l~v~~~~~-~~~~d~~~g~~~--   73 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG---PNGMAFDRPD---GRLYVADSGG-IAVVDPDTGKVT--   73 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS---EEEEEEECTT---SEEEEEETTC-EEEEETTTTEEE--
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC---CceEEEEccC---CEEEEEEcCc-eEEEecCCCcEE--
Confidence            567888 7777777778899999999888665422 122   6788888 55   4555555544 556688764321  


Q ss_pred             CCCCCCCceeec--c-ccCceeEEEEecCCCcEEEEEeCC--------CcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004745          102 DDNAITPSALYQ--C-HTRRVKKLAVEVGNPHVVWSASED--------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  170 (732)
Q Consensus       102 ~~~~~~~~~~~~--~-h~~~v~~l~~~p~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  170 (732)
                            .+....  . .....+.+++.|++ ++.++....        |.|..++.. ++.            ..+..  
T Consensus        74 ------~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~------------~~~~~--  131 (246)
T PF08450_consen   74 ------VLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKV------------TVVAD--  131 (246)
T ss_dssp             ------EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEE------------EEEEE--
T ss_pred             ------EEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeE------------EEEec--
Confidence                  122221  1 34568899999965 676665543        446666665 220            01110  


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC-CcccccCCCCCCccccccccccccCCCccc
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                                  .....+.|+|+|++..++++-+..+.|..+++..... +...          +.+  ...  .... .
T Consensus       132 ------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~----------~~~--~~~--~~~~-g  184 (246)
T PF08450_consen  132 ------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNR----------RVF--IDF--PGGP-G  184 (246)
T ss_dssp             ------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEE----------EEE--EE---SSSS-C
T ss_pred             ------------CcccccceEECCcchheeecccccceeEEEeccccccceeee----------eeE--EEc--CCCC-c
Confidence                        1124679999999433455667788999999864322 1110          000  000  1111 1


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeee
Q 004745          250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF  298 (732)
Q Consensus       250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  298 (732)
                      ..-.+++..+|++.++....+.|.+++.. ++....+......+..++|
T Consensus       185 ~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  185 YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             EEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             CCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            36789999999988877789999999988 4543333333234444444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>smart00320 WD40 WD40 repeats

Probab=97.96  E-value=2.3e-05  Score=50.85  Aligned_cols=39  Identities=36%  Similarity=0.553  Sum_probs=36.4

Q ss_pred             ccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEc
Q 004745          628 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT  666 (732)
Q Consensus       628 g~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~  666 (732)
                      ++++..+.+|...|++++|+|.+.++++++.|+.|++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            567888999999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.95  E-value=0.0013  Score=69.25  Aligned_cols=196  Identities=11%  Similarity=0.073  Sum_probs=109.1

Q ss_pred             cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCC-EEEEEECC---CcEEEEEcCCCCCCCCCCCCCCCceeeccccC
Q 004745           42 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  117 (732)
Q Consensus        42 ~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~-~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~  117 (732)
                      .|.+=|..... .+.+..+ . .+..-.|+|++  + .++..+.+   ..|.++|+.++..           ..+....+
T Consensus       170 ~l~~~d~dg~~-~~~~~~~-~-~~~~p~wSpDG--~~~i~y~s~~~~~~~Iyv~dl~tg~~-----------~~lt~~~g  233 (419)
T PRK04043        170 NIVLADYTLTY-QKVIVKG-G-LNIFPKWANKE--QTAFYYTSYGERKPTLYKYNLYTGKK-----------EKIASSQG  233 (419)
T ss_pred             eEEEECCCCCc-eeEEccC-C-CeEeEEECCCC--CcEEEEEEccCCCCEEEEEECCCCcE-----------EEEecCCC
Confidence            45555544333 3334233 3 77889999994  5 35544433   4588888876432           22222345


Q ss_pred             ceeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004745          118 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  195 (732)
Q Consensus       118 ~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  195 (732)
                      ......|+|++..++++.+.++  .|.++|+..++..                       .+.....   ......|+||
T Consensus       234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-----------------------~LT~~~~---~d~~p~~SPD  287 (419)
T PRK04043        234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-----------------------QITNYPG---IDVNGNFVED  287 (419)
T ss_pred             cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-----------------------EcccCCC---ccCccEECCC
Confidence            5667789998766666665554  5667777655411                       1111111   1234479999


Q ss_pred             CCCEEEEEe-CCC--eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC---
Q 004745          196 RPHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---  269 (732)
Q Consensus       196 ~~~~l~tg~-~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d---  269 (732)
                       |+.|+-.+ ..+  .|.+.|+.+++.....            +       .+.     ....|+|+|++|+..+..   
T Consensus       288 -G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt------------~-------~g~-----~~~~~SPDG~~Ia~~~~~~~~  342 (419)
T PRK04043        288 -DKRIVFVSDRLGYPNIFMKKLNSGSVEQVV------------F-------HGK-----NNSSVSTYKNYIVYSSRETNN  342 (419)
T ss_pred             -CCEEEEEECCCCCceEEEEECCCCCeEeCc------------c-------CCC-----cCceECCCCCEEEEEEcCCCc
Confidence             55555444 333  5777788765421100            0       111     124899999988777653   


Q ss_pred             ------CeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004745          270 ------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       270 ------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (732)
                            ..|++.|+.++.......           .    +   ......|+|||+.++
T Consensus       343 ~~~~~~~~I~v~d~~~g~~~~LT~-----------~----~---~~~~p~~SPDG~~I~  383 (419)
T PRK04043        343 EFGKNTFNLYLISTNSDYIRRLTA-----------N----G---VNQFPRFSSDGGSIM  383 (419)
T ss_pred             ccCCCCcEEEEEECCCCCeEECCC-----------C----C---CcCCeEECCCCCEEE
Confidence                  267777887754221111           0    0   112356899999887

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.91  E-value=0.0011  Score=68.93  Aligned_cols=127  Identities=15%  Similarity=0.158  Sum_probs=88.1

Q ss_pred             hccccEeeeccCCceeEEEEcC-CCCEEEEE----eCCCc----EEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCC
Q 004745            8 RLSQERELEGHQGCVNAISWNS-KGSLLISG----SDDTH----INVWSYSSRK--LLHSIETGHSANVFCTKFVPETSD   76 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg----~~dg~----i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g   76 (732)
                      +++++-..+--.++ .++.||. +...+.|.    +.+|.    -++|++...+  ++....-.....|.|++++|++  
T Consensus       195 klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E--  271 (545)
T PF11768_consen  195 KLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE--  271 (545)
T ss_pred             cEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCccc--
Confidence            34444444433344 5777886 34445443    23443    3466665443  3333334688899999999995  


Q ss_pred             CEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004745           77 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  150 (732)
Q Consensus        77 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~  150 (732)
                      +.++.|+.||.|.+||....            +..+....-.++.++|+|++ .+|++|+..|.+.+||+.-..
T Consensus       272 ~kLvlGC~DgSiiLyD~~~~------------~t~~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  272 DKLVLGCEDGSIILYDTTRG------------VTLLAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ceEEEEecCCeEEEEEcCCC------------eeeeeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeecCc
Confidence            89999999999999999853            23333456678999999954 899999999999999987654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=0.0013  Score=70.88  Aligned_cols=203  Identities=13%  Similarity=0.138  Sum_probs=124.8

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcC-eEEEEEecCCCCCEEEEEECCCc-----EEEEEcCCCCC
Q 004745           25 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGDAE-----VRLFNLSRFSG   98 (732)
Q Consensus        25 l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~-V~~~~~s~~~~g~~l~s~~~dg~-----i~vwd~~~~~~   98 (732)
                      -+|++.+..+|.|+.+|.|.+.+ ...+.++.+ +.+... |..+.....  .++|++.+.|+.     |+||+++..++
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~f-qa~~~siv~~L~~~~~--~~~L~sv~Ed~~~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGF-QAYEQSIVQFLYILNK--QNFLFSVGEDEQGNPVLLKIWDLEKVDK  104 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEec-ccceeeehh-eecchhhhhHhhcccC--ceEEEEEeecCCCCceEEEEecccccCC
Confidence            34678888999999999888776 344455667 677766 554544443  268888887754     99999986543


Q ss_pred             CCCCCCCCCCc--eeecc-----ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           99 RGLDDNAITPS--ALYQC-----HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        99 ~~~~~~~~~~~--~~~~~-----h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      ...    ..++  +.+..     ...++.+++.+.+ -..+|.|-.+|.|..+.=.-....                 . 
T Consensus       105 n~s----P~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDr-----------------g-  161 (933)
T KOG2114|consen  105 NNS----PQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDR-----------------G-  161 (933)
T ss_pred             CCC----cceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhcc-----------------c-
Confidence            220    1222  12222     2456888899885 588999999999988842211100                 0 


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  251 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (732)
                        . ..........+|+++.+..++...+.+++. ..|.+|.+....+....                    ..+.+.++
T Consensus       162 --s-r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y~l~gr~p~~~~--------------------ld~~G~~l  217 (933)
T KOG2114|consen  162 --S-RQDYSHRGKEPITGLALRSDGKSVLFVATT-EQVMLYSLSGRTPSLKV--------------------LDNNGISL  217 (933)
T ss_pred             --c-ceeeeccCCCCceeeEEecCCceeEEEEec-ceeEEEEecCCCcceee--------------------eccCCccc
Confidence              0 111122344589999999884432444443 46889998743211110                    12334468


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          252 THVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       252 ~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +|..|++....+++++. ..|.+|+...
T Consensus       218 nCss~~~~t~qfIca~~-e~l~fY~sd~  244 (933)
T KOG2114|consen  218 NCSSFSDGTYQFICAGS-EFLYFYDSDG  244 (933)
T ss_pred             eeeecCCCCccEEEecC-ceEEEEcCCC
Confidence            88888876654555543 4788888775

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.90  E-value=0.012  Score=62.34  Aligned_cols=201  Identities=11%  Similarity=0.045  Sum_probs=107.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEE------EEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCC
Q 004745           30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC------TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  103 (732)
Q Consensus        30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~------~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~  103 (732)
                      .+..+++++.++.+.-+|..+|+.+.+........+..      +.-.|--.+..++.++.++.+..+|.++++.     
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~-----  142 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV-----  142 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC-----
Confidence            35577778888999999999999887763222111100      0001100135677788899999999987543     


Q ss_pred             CCCCCceeeccccCceeE-EEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCC
Q 004745          104 NAITPSALYQCHTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  182 (732)
Q Consensus       104 ~~~~~~~~~~~h~~~v~~-l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (732)
                           +...... ..+.+ ....  + ..++.+..++.|..+|..+++.              +|....... .+ ....
T Consensus       143 -----~W~~~~~-~~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~--------------~W~~~~~~~-~~-~~~~  197 (394)
T PRK11138        143 -----AWQTKVA-GEALSRPVVS--D-GLVLVHTSNGMLQALNESDGAV--------------KWTVNLDVP-SL-TLRG  197 (394)
T ss_pred             -----cccccCC-CceecCCEEE--C-CEEEEECCCCEEEEEEccCCCE--------------eeeecCCCC-cc-cccC
Confidence                 2222211 11111 1121  3 4555677789999999999873              333322100 00 0000


Q ss_pred             CccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC--CC
Q 004745          183 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NG  260 (732)
Q Consensus       183 ~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--~g  260 (732)
                      ...++    ..   +..++.++.++.+..+|..+++.+-......+..              .........+.-+|  .+
T Consensus       198 ~~sP~----v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~--------------~~~~~~~~~~~~sP~v~~  256 (394)
T PRK11138        198 ESAPA----TA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG--------------ATEIDRLVDVDTTPVVVG  256 (394)
T ss_pred             CCCCE----EE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCC--------------ccchhcccccCCCcEEEC
Confidence            01111    11   2256777888999999999887543321110000              00000000111112  24


Q ss_pred             CEEEEEecCCeEEEEECCCCC
Q 004745          261 EEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       261 ~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      ..+++++.+|.++.+|..+++
T Consensus       257 ~~vy~~~~~g~l~ald~~tG~  277 (394)
T PRK11138        257 GVVYALAYNGNLVALDLRSGQ  277 (394)
T ss_pred             CEEEEEEcCCeEEEEECCCCC
Confidence            567788889999999998854

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=0.0037  Score=64.00  Aligned_cols=225  Identities=10%  Similarity=0.105  Sum_probs=123.8

Q ss_pred             CCceeEEEEcCCCCEEEEEeC-----------CCcEEEEeCCCCeeEEEEcc--CCCcCeEEEEEecCCCCCEEEEEECC
Q 004745           19 QGCVNAISWNSKGSLLISGSD-----------DTHINVWSYSSRKLLHSIET--GHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~-----------dg~i~vWd~~~~~~~~~~~~--~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      .-.|.-+.|||+.+||+|-+.           ...++|||+.+|...+.|..  +....-.-..||.+  ++++|--.. 
T Consensus       249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D--dKy~Arm~~-  325 (698)
T KOG2314|consen  249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD--DKYFARMTG-  325 (698)
T ss_pred             CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccC--CceeEEecc-
Confidence            346888999999999999763           14789999999998888832  11122244689988  467765554 


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCCCCCCCCCCCc
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~  160 (732)
                      ..|.||+........        .+.+  .-..|....|+|. +++||--...     ..+.+-.+.+++.+......+.
T Consensus       326 ~sisIyEtpsf~lld--------~Ksl--ki~gIr~FswsP~-~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV  394 (698)
T KOG2314|consen  326 NSISIYETPSFMLLD--------KKSL--KISGIRDFSWSPT-SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV  394 (698)
T ss_pred             ceEEEEecCceeeec--------cccc--CCccccCcccCCC-cceEEEEcccccCCcceEEEEecCccceeeeccceee
Confidence            678999877521100        0111  1345777888884 3666532211     1233344333332211111110


Q ss_pred             ccceEEe-----------------------------eccCCccccccCCCCCccceEEEEecCCCCCEEEEEe-C--CCe
Q 004745          161 ECRNILL-----------------------------DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-S--DAF  208 (732)
Q Consensus       161 ~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~-~--dg~  208 (732)
                      ..-.+.|                             .+..... ++ ....-...|...+|.|. |+.+++-+ .  ..+
T Consensus       395 sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pv-e~velke~vi~FaWEP~-gdkF~vi~g~~~k~t  471 (698)
T KOG2314|consen  395 SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PV-EVVELKESVIAFAWEPH-GDKFAVISGNTVKNT  471 (698)
T ss_pred             eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cc-eeeecchheeeeeeccC-CCeEEEEEccccccc
Confidence            0000111                             1100000 00 00112336677899999 45554443 3  357


Q ss_pred             EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec---CCeEEEEECCC
Q 004745          209 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNH  279 (732)
Q Consensus       209 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~---dg~v~iwd~~~  279 (732)
                      +++|-+.+...  .       +..+..+         .. ...+.+.|+|.|++++++.-   .|.+..+|+..
T Consensus       472 vsfY~~e~~~~--~-------~~lVk~~---------dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  472 VSFYAVETNIK--K-------PSLVKEL---------DK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             eeEEEeecCCC--c-------hhhhhhh---------cc-cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            88888874211  0       0111111         01 13788999999999988744   68999999875

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.83  E-value=0.002  Score=62.69  Aligned_cols=173  Identities=16%  Similarity=0.158  Sum_probs=96.7

Q ss_pred             EEEcCCCCEEEEEe-----CCCcEEEEeCC-CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-------CCcEEEE
Q 004745           25 ISWNSKGSLLISGS-----DDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-------DAEVRLF   91 (732)
Q Consensus        25 l~~s~dg~~lasg~-----~dg~i~vWd~~-~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-------dg~i~vw   91 (732)
                      -.||+||++|.+.=     ..|.|-|||.. +-+.+.++ ..|.-.-..+.+.|+  |+.|+.+..       .|..++ 
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~kL-  131 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRAKL-  131 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCceec-
Confidence            57999999999873     35889999999 66788888 667666678889999  467766521       233333 


Q ss_pred             EcCCCCCCCC--CCCCCCCce--ee--ccccCceeEEEEecCCCcEEEEEeCCCc-------EEEEECCCCCCCCCCCCC
Q 004745           92 NLSRFSGRGL--DDNAITPSA--LY--QCHTRRVKKLAVEVGNPHVVWSASEDGT-------LRQHDFRQGSSCPPAGSS  158 (732)
Q Consensus        92 d~~~~~~~~~--~~~~~~~~~--~~--~~h~~~v~~l~~~p~~~~~l~s~s~dg~-------i~vwd~~~~~~~~~~~~~  158 (732)
                      |+.+.+....  +......+.  .+  .-|..+|..+++.+++ ..++..-..|.       |-+++....  .      
T Consensus       132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~------  202 (305)
T PF07433_consen  132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--L------  202 (305)
T ss_pred             ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--c------
Confidence            2222111100  000011122  23  3366778888888754 33333222221       111111110  0      


Q ss_pred             CcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Q 004745          159 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  222 (732)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~  222 (732)
                            ..+.....      ........+-+|++++++....+|+-..+.+.+||..+++.+..
T Consensus       203 ------~~~~~p~~------~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~  254 (305)
T PF07433_consen  203 ------RLLPAPEE------QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS  254 (305)
T ss_pred             ------eeccCChH------HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence                  00000000      01123458899999998444446666788999999999875543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.78  E-value=1e-05  Score=83.36  Aligned_cols=168  Identities=23%  Similarity=0.329  Sum_probs=113.1

Q ss_pred             eeccCCceeEEEEcC-CCCEEEEEe----CCCcEEEEeCCCC----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745           15 LEGHQGCVNAISWNS-KGSLLISGS----DDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus        15 l~~h~~~V~~l~~s~-dg~~lasg~----~dg~i~vWd~~~~----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      ..+|..+.++++|++ |.+.||.|-    .|..+.|||+.++    +....|..+......+++|..+.  +++.+|...
T Consensus        98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~--klvlaGm~s  175 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT--KLVLAGMTS  175 (783)
T ss_pred             cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCc--chhhccccc
Confidence            346778999999998 667888773    4678999998876    22223322244556688888774  889999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEE-CCCCCCCCCCCCCCcccce
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD-FRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd-~~~~~~~~~~~~~~~~~~~  164 (732)
                      ..++++|++...           .....-.+..+..+.+.|..++++++-. ||.|.+|| .+.-+.+..          
T Consensus       176 r~~~ifdlRqs~-----------~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~----------  233 (783)
T KOG1008|consen  176 RSVHIFDLRQSL-----------DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQ----------  233 (783)
T ss_pred             chhhhhhhhhhh-----------hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHH----------
Confidence            999999998421           1111112345667788887778886655 89999999 444332110          


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-CeEEEEECCC
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRM  216 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-g~v~iwd~~~  216 (732)
                                ..+.........+..++|+|....++++...| ++|+++|+..
T Consensus       234 ----------~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  234 ----------IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ----------HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence                      01111122333688999999866677777765 7899999864

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.77  E-value=0.006  Score=64.17  Aligned_cols=207  Identities=19%  Similarity=0.176  Sum_probs=109.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004745           30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  109 (732)
Q Consensus        30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  109 (732)
                      ++..++.++.++.+..+|..+|+.+.+..  -...+.+.-...   +..++.++.++.|..||.++++.          +
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~--~~~~~~~~p~v~---~~~v~v~~~~g~l~a~d~~tG~~----------~  168 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAK--LSSEVLSPPLVA---NGLVVVRTNDGRLTALDAATGER----------L  168 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeec--cCceeecCCEEE---CCEEEEECCCCeEEEEEcCCCce----------e
Confidence            45678888889999999999999887762  222232211112   25677778899999999987532          2


Q ss_pred             eeeccccCce-----eEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC----------------CCc--------
Q 004745          110 ALYQCHTRRV-----KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS----------------SHQ--------  160 (732)
Q Consensus       110 ~~~~~h~~~v-----~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----------------~~~--------  160 (732)
                      ..+......+     .+....  + ..++.+..++.+..+|+++++..-....                ..+        
T Consensus       169 W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy  245 (377)
T TIGR03300       169 WTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY  245 (377)
T ss_pred             eEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence            2221111100     011111  2 3566777778888888877764311000                000        


Q ss_pred             ----ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccc
Q 004745          161 ----ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  236 (732)
Q Consensus       161 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  236 (732)
                          ......++..++.........    .......  . +..+++++.+|.|..+|..+++.+-....           
T Consensus       246 ~~~~~g~l~a~d~~tG~~~W~~~~~----~~~~p~~--~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~-----------  307 (377)
T TIGR03300       246 AVSYQGRVAALDLRSGRVLWKRDAS----SYQGPAV--D-DNRLYVTDADGVVVALDRRSGSELWKNDE-----------  307 (377)
T ss_pred             EEEcCCEEEEEECCCCcEEEeeccC----CccCceE--e-CCEEEEECCCCeEEEEECCCCcEEEcccc-----------
Confidence                000112222222211111100    0011111  2 34677777788888888877754322100           


Q ss_pred             cccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCc
Q 004745          237 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  283 (732)
Q Consensus       237 ~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~  283 (732)
                          .  .+.   ...+...  .+..|++++.+|.|+++|..+++..
T Consensus       308 ----~--~~~---~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       308 ----L--KYR---QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             ----c--cCC---ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence                0  000   0111122  3568999999999999999887543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.73  E-value=0.016  Score=56.52  Aligned_cols=226  Identities=13%  Similarity=0.153  Sum_probs=133.0

Q ss_pred             eeEEEEcC-CCCEEEEEeCCCc-EEEEeCCCCeeEEEEccCCCcCeE--EEEEecCCCCCEEEEEE-----CCCcEEEEE
Q 004745           22 VNAISWNS-KGSLLISGSDDTH-INVWSYSSRKLLHSIETGHSANVF--CTKFVPETSDELVVSGA-----GDAEVRLFN   92 (732)
Q Consensus        22 V~~l~~s~-dg~~lasg~~dg~-i~vWd~~~~~~~~~~~~~h~~~V~--~~~~s~~~~g~~l~s~~-----~dg~i~vwd   92 (732)
                      ...++.+| .+..++.+-.-|+ ..+||..+++.+..+ ....+.-+  .-.|+++  |++|++.=     ..|.|-|||
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-~a~~gRHFyGHg~fs~d--G~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-WAPPGRHFYGHGVFSPD--GRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-cCCCCCEEecCEEEcCC--CCEEEEeccccCCCcEEEEEEE
Confidence            34678888 5566777766654 688999999988877 33333322  3679999  58888863     357899999


Q ss_pred             cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004745           93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                      ....         ...+..+..|.-....+.+.|++ ..|+.+.  |-|.-- ..+++.  +...........+++..+|
T Consensus        84 ~~~~---------~~ri~E~~s~GIGPHel~l~pDG-~tLvVAN--GGI~Th-pd~GR~--kLNl~tM~psL~~ld~~sG  148 (305)
T PF07433_consen   84 AARG---------YRRIGEFPSHGIGPHELLLMPDG-ETLVVAN--GGIETH-PDSGRA--KLNLDTMQPSLVYLDARSG  148 (305)
T ss_pred             CcCC---------cEEEeEecCCCcChhhEEEcCCC-CEEEEEc--CCCccC-cccCce--ecChhhcCCceEEEecCCC
Confidence            9831         12366777777777889999966 5554442  222111 111110  1111122233455556667


Q ss_pred             ccccccCC--CCCccceEEEEecCCCCCEEEEEeCCC-------eEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          173 AKRSLADP--PKQTLSLKSCDISSTRPHLLLVGGSDA-------FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       173 ~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~tg~~dg-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                      ........  ..|...|..+++.++ |..++..=..|       .|-+++...  .+..+..+..           ..  
T Consensus       149 ~ll~q~~Lp~~~~~lSiRHLa~~~~-G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~-----------~~--  212 (305)
T PF07433_consen  149 ALLEQVELPPDLHQLSIRHLAVDGD-GTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEE-----------QW--  212 (305)
T ss_pred             ceeeeeecCccccccceeeEEecCC-CcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChH-----------HH--
Confidence            65555444  447778999999998 54433332222       133333222  1111110000           00  


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCC
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGG  282 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~  282 (732)
                      ..- ...+-+|++++++..+++.+- .+.+.+||..++..
T Consensus       213 ~~l-~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~  251 (305)
T PF07433_consen  213 RRL-NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL  251 (305)
T ss_pred             Hhh-CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence            001 124889999999998877766 67999999999653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.68  E-value=0.0039  Score=60.73  Aligned_cols=192  Identities=17%  Similarity=0.154  Sum_probs=109.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004745           30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  109 (732)
Q Consensus        30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  109 (732)
                      ++.++++++.++.|..||..+|+.+.++. . ...+.......+   ..++.++.++.|..+|..+++.          +
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~-~~~~~~~~~~~~---~~v~v~~~~~~l~~~d~~tG~~----------~   99 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFD-L-PGPISGAPVVDG---GRVYVGTSDGSLYALDAKTGKV----------L   99 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEE-C-SSCGGSGEEEET---TEEEEEETTSEEEEEETTTSCE----------E
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEee-c-cccccceeeecc---cccccccceeeeEecccCCcce----------e
Confidence            56677778899999999999999988873 2 222222122222   5677777888999999887532          3


Q ss_pred             eee-ccc----c-CceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC
Q 004745          110 ALY-QCH----T-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ  183 (732)
Q Consensus       110 ~~~-~~h----~-~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (732)
                      ... ...    . .......+.   +..++.+..++.|..+|+.+++.              +|........ .......
T Consensus       100 W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~--------------~w~~~~~~~~-~~~~~~~  161 (238)
T PF13360_consen  100 WSIYLTSSPPAGVRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKL--------------LWKYPVGEPR-GSSPISS  161 (238)
T ss_dssp             EEEEE-SSCTCSTB--SEEEEE---TTEEEEEETCSEEEEEETTTTEE--------------EEEEESSTT--SS--EEE
T ss_pred             eeeccccccccccccccCceEe---cCEEEEEeccCcEEEEecCCCcE--------------EEEeecCCCC-CCcceee
Confidence            331 111    1 111222332   36677778789999999999873              3332211100 0000000


Q ss_pred             ccceEEEEecCCCCCEEEEEeCCCe-EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCE
Q 004745          184 TLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE  262 (732)
Q Consensus       184 ~~~v~~i~~~~~~~~~l~tg~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~  262 (732)
                      ...+..-....+ + .++.++.++. +.+ |+.+++.+-..                    .  .. .+.. ...+.+..
T Consensus       162 ~~~~~~~~~~~~-~-~v~~~~~~g~~~~~-d~~tg~~~w~~--------------------~--~~-~~~~-~~~~~~~~  214 (238)
T PF13360_consen  162 FSDINGSPVISD-G-RVYVSSGDGRVVAV-DLATGEKLWSK--------------------P--IS-GIYS-LPSVDGGT  214 (238)
T ss_dssp             ETTEEEEEECCT-T-EEEEECCTSSEEEE-ETTTTEEEEEE--------------------C--SS--ECE-CEECCCTE
T ss_pred             ecccccceEEEC-C-EEEEEcCCCeEEEE-ECCCCCEEEEe--------------------c--CC-CccC-CceeeCCE
Confidence            011122222223 4 6666777775 555 99887632110                    0  00 1222 13567788


Q ss_pred             EEEEecCCeEEEEECCCCC
Q 004745          263 VLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       263 l~~~~~dg~v~iwd~~~~~  281 (732)
                      |++++.++.|..||+.+++
T Consensus       215 l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  215 LYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             EEEEETTTEEEEEETTTTE
T ss_pred             EEEEeCCCEEEEEECCCCC
Confidence            8888899999999999964

...

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.66  E-value=3.2e-05  Score=79.84  Aligned_cols=209  Identities=13%  Similarity=0.192  Sum_probs=130.6

Q ss_pred             CCceeEEEEcCCC--CEEEEEeCCCcEEEEeCCCCeeE-EEEccCCCcCeEEEEEecCCCCCEEEEEE----CCCcEEEE
Q 004745           19 QGCVNAISWNSKG--SLLISGSDDTHINVWSYSSRKLL-HSIETGHSANVFCTKFVPETSDELVVSGA----GDAEVRLF   91 (732)
Q Consensus        19 ~~~V~~l~~s~dg--~~lasg~~dg~i~vWd~~~~~~~-~~~~~~h~~~V~~~~~s~~~~g~~l~s~~----~dg~i~vw   91 (732)
                      ...+.|+++.-+.  ..++.|..+|.|-+-.+....-- +.+..+|....++++|++-. -+.||.|-    .|..+.||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLD-tn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELD-TNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccccc-HHHHHhhhhhhcccCCccce
Confidence            4567788776543  47889999999999877644322 44446888999999999862 35677763    25679999


Q ss_pred             EcCCCCCCCCCCCCCCCceeec-cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004745           92 NLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  170 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  170 (732)
                      |+.+.-..+      +....+. +......+++|.. +.+++.+|...+.++++|++.....                  
T Consensus       135 di~s~ltvP------ke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~------------------  189 (783)
T KOG1008|consen  135 DINSLLTVP------KESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDS------------------  189 (783)
T ss_pred             ecccccCCC------ccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhh------------------
Confidence            998641111      0011111 2344566888885 5578888888889999999854311                  


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEE-CCCCC-CCcccccCCCCCCccccccccccccCCCcc
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD-RRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                         ...     -....+..+..+|-.++++++-. ||.|.+|| .++.+ ++..+...                 .....
T Consensus       190 ---~~s-----vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~-----------------~N~~~  243 (783)
T KOG1008|consen  190 ---VSS-----VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRN-----------------ENKKP  243 (783)
T ss_pred             ---hhh-----hhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhC-----------------CCCcc
Confidence               000     01225566777785466776655 99999999 44332 11111100                 01101


Q ss_pred             ccEEEEEEcCCCC-EEEEEec-CCeEEEEECCC
Q 004745          249 LHLTHVTFSPNGE-EVLLSYS-GEHVYLMDVNH  279 (732)
Q Consensus       249 ~~i~~l~~sp~g~-~l~~~~~-dg~v~iwd~~~  279 (732)
                      ..+..++|+|... .|++.+. .++|+++++..
T Consensus       244 ~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  244 KQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             cceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            1488899999543 3444444 68999999876

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.62  E-value=0.00026  Score=73.32  Aligned_cols=74  Identities=15%  Similarity=0.204  Sum_probs=63.6

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR   95 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~   95 (732)
                      .....|.|++++|+.++|+.|..||.|.+||...+....   ....-..+.++|+|+  |..+++|+..|.+.+||+..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~---~ka~~~P~~iaWHp~--gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL---AKAEFIPTLIAWHPD--GAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee---eeecccceEEEEcCC--CcEEEEEcCCceEEEEEeec
Confidence            467899999999999999999999999999987764332   234566799999999  58999999999999999984

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.60  E-value=0.0017  Score=68.44  Aligned_cols=123  Identities=15%  Similarity=0.207  Sum_probs=90.1

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS   97 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~   97 (732)
                      |...|.--+++..+++++.|+.-|.+++++-..++....-..+-.+.+..+..+++.  .++|.|+..|.|.++-+....
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e--~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE--YLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh--HhhhhhcCCceEEeehhhccC
Confidence            556676677888899999999999999999877766544423444556666778873  788888889999999877522


Q ss_pred             CCCCCCCCCCCce-eeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004745           98 GRGLDDNAITPSA-LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  148 (732)
Q Consensus        98 ~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  148 (732)
                      ...     ...+. .-+.|...|+++.|++++ ..+++|...|.|..-.+..
T Consensus       110 p~~-----~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  110 PRD-----LDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCc-----ceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence            111     01111 112378899999999954 8888999999999888877

>smart00320 WD40 WD40 repeats

Probab=97.56  E-value=0.00017  Score=46.53  Aligned_cols=39  Identities=33%  Similarity=0.633  Sum_probs=35.3

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEe
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS   47 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd   47 (732)
                      .+....+..|...|+++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            356678889999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.55  E-value=0.015  Score=65.54  Aligned_cols=213  Identities=10%  Similarity=0.067  Sum_probs=128.1

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC--CC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS--RF   96 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~--~~   96 (732)
                      .+.|.++.|..++.-++.+..+|.|.+-|..+......  ..-...|.+++|+|++  +.++-....+++.+-+-.  --
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--g~vd~GI~aaswS~De--e~l~liT~~~tll~mT~~f~~i  143 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--GNVDNGISAASWSPDE--ELLALITGRQTLLFMTKDFEPI  143 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeee--eeccCceEEEeecCCC--cEEEEEeCCcEEEEEeccccch
Confidence            36899999999999888888999999998887654321  2356789999999995  888888777776653321  00


Q ss_pred             CCCCCC---CCCCCCc--------eeecc---------------------ccCceeEEEEecCCCcEEEEE-----eCCC
Q 004745           97 SGRGLD---DNAITPS--------ALYQC---------------------HTRRVKKLAVEVGNPHVVWSA-----SEDG  139 (732)
Q Consensus        97 ~~~~~~---~~~~~~~--------~~~~~---------------------h~~~v~~l~~~p~~~~~l~s~-----s~dg  139 (732)
                      ..+.+.   ....+.+        ..+.|                     ..+.=++|.|--|+ .+||+.     ...+
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~~~~~~R  222 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVESETGTR  222 (1265)
T ss_pred             hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cEEEEEEEeccCCce
Confidence            000000   0000000        01110                     11223458888744 788763     2227


Q ss_pred             cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEE---eCCCeEEEEECCC
Q 004745          140 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG---GSDAFARLYDRRM  216 (732)
Q Consensus       140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg---~~dg~v~iwd~~~  216 (732)
                      .|++||-+ +..-                       ..  .....+.-.+++|-|. |.++++-   ++|+.|.+|..+.
T Consensus       223 kirV~drE-g~Ln-----------------------s~--se~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErNG  275 (1265)
T KOG1920|consen  223 KIRVYDRE-GALN-----------------------ST--SEPVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERNG  275 (1265)
T ss_pred             eEEEeccc-chhh-----------------------cc--cCcccccccceeecCC-CCeEeeeeecCCCCcEEEEecCC
Confidence            89999976 3311                       00  0111223467899997 7788775   3466799998654


Q ss_pred             CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEE---EecCCeEEEEECCCCC
Q 004745          217 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL---SYSGEHVYLMDVNHAG  281 (732)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~---~~~dg~v~iwd~~~~~  281 (732)
                      .+. ..+..+            .    .-. ...+..++|+.++..|++   ......|++|-+.+..
T Consensus       276 L~h-g~f~l~------------~----p~d-e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  276 LRH-GEFVLP------------F----PLD-EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             ccc-cccccC------------C----ccc-ccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            321 111100            0    001 113889999999998888   4445569999888743

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.30  E-value=0.012  Score=47.66  Aligned_cols=101  Identities=17%  Similarity=0.193  Sum_probs=70.7

Q ss_pred             eeEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004745           22 VNAISWNS---KG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS   97 (732)
Q Consensus        22 V~~l~~s~---dg-~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~   97 (732)
                      |++|++..   || +.|++|+.|..||||+  ..+.+..+  .-.+.|+++.-...   ..++.+..+|+|-+|+-... 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei--~e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~~~R-   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEI--TETDKVTSLCSLGG---GRFAYALANGTVGVYDRSQR-   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEE--ecccceEEEEEcCC---CEEEEEecCCEEEEEeCcce-
Confidence            66777654   44 5899999999999997  34667776  34567888887776   68999999999999976532 


Q ss_pred             CCCCCCCCCCCceeeccccCceeEEEEec---CCCcEEEEEeCCCcEE
Q 004745           98 GRGLDDNAITPSALYQCHTRRVKKLAVEV---GNPHVVWSASEDGTLR  142 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p---~~~~~l~s~s~dg~i~  142 (732)
                                 +...+. +..++++.+..   ++-.-|++|-.+|.|-
T Consensus        74 -----------lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 -----------LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -----------eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                       233332 33366666543   3334688888888774

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.0027  Score=62.39  Aligned_cols=86  Identities=16%  Similarity=0.162  Sum_probs=69.4

Q ss_pred             CCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccc
Q 004745          107 TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS  186 (732)
Q Consensus       107 ~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (732)
                      +....+.+|...|.+++|+|.+..++..++.+..|+|.|+++....                         .... ....
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v-------------------------ssy~-a~~~  237 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV-------------------------SSYI-AYNQ  237 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee-------------------------ehee-ccCC
Confidence            3455677788899999999987668889999999999999987522                         0111 1237


Q ss_pred             eEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          187 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       187 v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      +++++|+-++.++|.+|-.+|.|.|||++..+
T Consensus       238 ~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  238 IWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            89999999988999999999999999998654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.26  E-value=0.087  Score=50.45  Aligned_cols=182  Identities=14%  Similarity=0.154  Sum_probs=113.7

Q ss_pred             eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004745           15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS   94 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~   94 (732)
                      +.|-+..|.++.|+|+.+.|++....+.-.||=..+|+.+.++.-..-.....|++..+  |++.++-=.++.+.++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~--n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG--NQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC--CEEEEEehhcceEEEEEEc
Confidence            44556669999999999988888887888888778899998884433445567888877  4666666668888888776


Q ss_pred             CCCCCCCCCCC-CCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCC-CCC-CcccceEEeeccC
Q 004745           95 RFSGRGLDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA-GSS-HQECRNILLDLRC  171 (732)
Q Consensus        95 ~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~-~~~~~~~~~~~~~  171 (732)
                      ...... .... ..++......+.....++|.|.+ +.|..+-+-.-+.|+.+......... ... +......      
T Consensus       159 ~~t~~~-~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~------  230 (316)
T COG3204         159 ADTTVI-SAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL------  230 (316)
T ss_pred             CCccEE-eccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccce------
Confidence            432111 1101 11122222225567889999966 44445555556777776543311000 000 0000000      


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  217 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~  217 (732)
                                 ....|.++.|++..+.+|+-+..++.+.-.|....
T Consensus       231 -----------f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         231 -----------FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             -----------EeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence                       12267788899877888888888888888887643

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.14  E-value=0.017  Score=60.03  Aligned_cols=223  Identities=15%  Similarity=0.137  Sum_probs=114.5

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc-c------CCCcCeEEEEEec---CCCC
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-T------GHSANVFCTKFVP---ETSD   76 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~-~------~h~~~V~~~~~s~---~~~g   76 (732)
                      +.+.+...++...++|++++.|.- -++|.|..+|.+.|.|++....+..-. .      .....|+++.|..   .+++
T Consensus        74 ~gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   74 EGFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             EEEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             cccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence            456667777778999999999844 489999999999999998887776531 1      1345688999973   2212


Q ss_pred             ---CEEEEEECCCcEEEEEcCC-CCCCCCCCCCCCCceeeccccCceeEEEE-ecC--------------------CCcE
Q 004745           77 ---ELVVSGAGDAEVRLFNLSR-FSGRGLDDNAITPSALYQCHTRRVKKLAV-EVG--------------------NPHV  131 (732)
Q Consensus        77 ---~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~p~--------------------~~~~  131 (732)
                         -.++.|...|.+.+|.+.- ..+.-.    .........+.+.|..|.. +.+                    -+.+
T Consensus       153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~----v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~  228 (395)
T PF08596_consen  153 YSSICLLVGTNSGNVLTFKILPSSNGRFS----VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY  228 (395)
T ss_dssp             SEEEEEEEEETTSEEEEEEEEE-GGG-EE----EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred             ccceEEEEEeCCCCEEEEEEecCCCCceE----EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence               3688889999999998752 111100    0111112234455555542 211                    1124


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEec----CCCCCEEEEEeCCC
Q 004745          132 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHLLLVGGSDA  207 (732)
Q Consensus       132 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~l~tg~~dg  207 (732)
                      ++.++ +..++++...+.+...           ..+              ........+.+-    ...+..|++-..+|
T Consensus       229 vVvvS-e~~irv~~~~~~k~~~-----------K~~--------------~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G  282 (395)
T PF08596_consen  229 VVVVS-ESDIRVFKPPKSKGAH-----------KSF--------------DDPFLCSSASVVPTISRNGGYCLVCLFNNG  282 (395)
T ss_dssp             EEEE--SSEEEEE-TT---EEE-----------EE---------------SS-EEEEEEEEEEEE-EEEEEEEEEEETTS
T ss_pred             EEEEc-ccceEEEeCCCCcccc-----------eee--------------ccccccceEEEEeecccCCceEEEEEECCC
Confidence            44444 5679998887665210           010              111122233332    11256788889999


Q ss_pred             eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          208 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       208 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                      .|++|.+...+++.......                .-... .+....++++|..++..+.. .+.++.+-
T Consensus       283 ~i~i~SLP~Lkei~~~~l~~----------------~~d~~-~~~~ssis~~Gdi~~~~gps-E~~l~sv~  335 (395)
T PF08596_consen  283 SIRIYSLPSLKEIKSVSLPP----------------PLDSR-RLSSSSISRNGDIFYWTGPS-EIQLFSVW  335 (395)
T ss_dssp             EEEEEETTT--EEEEEE-SS-------------------HH-HHTT-EE-TTS-EEEE-SSS-EEEEEEEE
T ss_pred             cEEEEECCCchHhhcccCCC----------------ccccc-cccccEECCCCCEEEEeCcc-cEEEEEEE
Confidence            99999999988776543210                00001 13456778999876666543 44444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.13  E-value=0.28  Score=51.80  Aligned_cols=65  Identities=25%  Similarity=0.334  Sum_probs=46.7

Q ss_pred             EEEcCCCCEEEEEeCC----------C-cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004745           25 ISWNSKGSLLISGSDD----------T-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL   93 (732)
Q Consensus        25 l~~s~dg~~lasg~~d----------g-~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~   93 (732)
                      ++.+|.|-.+|....+          . .|+||+. .|+.+..+.-.+ +.|.++.|+.+   ..|+....||.++++|+
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~-~~iv~~~wt~~---e~LvvV~~dG~v~vy~~  108 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDS-GRIVGMGWTDD---EELVVVQSDGTVRVYDL  108 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECC-CCEEEEEECCC---CeEEEEEcCCEEEEEeC
Confidence            4556666666665433          1 4889984 466666663333 88999999987   56777789999999998


Q ss_pred             C
Q 004745           94 S   94 (732)
Q Consensus        94 ~   94 (732)
                      .
T Consensus       109 ~  109 (410)
T PF04841_consen  109 F  109 (410)
T ss_pred             C
Confidence            6

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.11  E-value=0.066  Score=52.05  Aligned_cols=191  Identities=17%  Similarity=0.132  Sum_probs=103.8

Q ss_pred             CCcEEEEeCCCCeeEEEEccCC-CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCc
Q 004745           40 DTHINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  118 (732)
Q Consensus        40 dg~i~vWd~~~~~~~~~~~~~h-~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  118 (732)
                      +|+|..||..+|+.+.+..... .....+.....+   ..+++++.++.|..||..+++.          +..... ...
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~l~~~d~~tG~~----------~W~~~~-~~~   67 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDG---GRVYVASGDGNLYALDAKTGKV----------LWRFDL-PGP   67 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEET---TEEEEEETTSEEEEEETTTSEE----------EEEEEC-SSC
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeC---CEEEEEcCCCEEEEEECCCCCE----------EEEeec-ccc
Confidence            6899999999999998873211 122222223233   6788888999999999987532          233222 111


Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec-cCCccccccCCCCCccceEEEEecCCCC
Q 004745          119 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL-RCGAKRSLADPPKQTLSLKSCDISSTRP  197 (732)
Q Consensus       119 v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~  197 (732)
                      +....... + ..++.++.++.|+.+|..+++.              +|.. ....      ............+.   +
T Consensus        68 ~~~~~~~~-~-~~v~v~~~~~~l~~~d~~tG~~--------------~W~~~~~~~------~~~~~~~~~~~~~~---~  122 (238)
T PF13360_consen   68 ISGAPVVD-G-GRVYVGTSDGSLYALDAKTGKV--------------LWSIYLTSS------PPAGVRSSSSPAVD---G  122 (238)
T ss_dssp             GGSGEEEE-T-TEEEEEETTSEEEEEETTTSCE--------------EEEEEE-SS------CTCSTB--SEEEEE---T
T ss_pred             ccceeeec-c-cccccccceeeeEecccCCcce--------------eeeeccccc------cccccccccCceEe---c
Confidence            11111222 3 4555666788999999998873              3331 1110      00000111122222   4


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 004745          198 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  277 (732)
Q Consensus       198 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~  277 (732)
                      ..++++..++.|..+|+++++.+-...........           ..+....+..-....++ .++.++.++.+..+|+
T Consensus       123 ~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~  190 (238)
T PF13360_consen  123 DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS-----------PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDL  190 (238)
T ss_dssp             TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-------------EEEETTEEEEEECCTT-EEEEECCTSSEEEEET
T ss_pred             CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc-----------ceeeecccccceEEECC-EEEEEcCCCeEEEEEC
Confidence            58888888999999999999875544321100000           00000012222223344 7788887875444498


Q ss_pred             CCCC
Q 004745          278 NHAG  281 (732)
Q Consensus       278 ~~~~  281 (732)
                      .+++
T Consensus       191 ~tg~  194 (238)
T PF13360_consen  191 ATGE  194 (238)
T ss_dssp             TTTE
T ss_pred             CCCC
Confidence            8864

...

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.02  E-value=0.045  Score=44.45  Aligned_cols=105  Identities=23%  Similarity=0.197  Sum_probs=67.9

Q ss_pred             eEEEEEec---CCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcE
Q 004745           65 VFCTKFVP---ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL  141 (732)
Q Consensus        65 V~~~~~s~---~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  141 (732)
                      |+++++..   ++ .+.|+.|+.|..|++|+=..            .+..+.. .+.|+++.-.. . ..|+.+-.+|+|
T Consensus         2 V~al~~~d~d~dg-~~eLlvGs~D~~IRvf~~~e------------~~~Ei~e-~~~v~~L~~~~-~-~~F~Y~l~NGTV   65 (111)
T PF14783_consen    2 VTALCLFDFDGDG-ENELLVGSDDFEIRVFKGDE------------IVAEITE-TDKVTSLCSLG-G-GRFAYALANGTV   65 (111)
T ss_pred             eeEEEEEecCCCC-cceEEEecCCcEEEEEeCCc------------EEEEEec-ccceEEEEEcC-C-CEEEEEecCCEE
Confidence            56666654   32 26899999999999998662            2555553 56777777665 3 678899999999


Q ss_pred             EEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004745          142 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  210 (732)
Q Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~  210 (732)
                      -+|+-...                +|..++.+         +...+....++.++-.-|++|-.+|.|-
T Consensus        66 GvY~~~~R----------------lWRiKSK~---------~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   66 GVYDRSQR----------------LWRIKSKN---------QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEeCcce----------------eeeeccCC---------CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            99975332                33332221         1112333334445455799999999874

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.99  E-value=0.039  Score=60.03  Aligned_cols=170  Identities=18%  Similarity=0.277  Sum_probs=104.2

Q ss_pred             CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc---
Q 004745           64 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT---  140 (732)
Q Consensus        64 ~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~---  140 (732)
                      .|.|  |++.  +..++.|+.+|.|.+.+-.-           ..++.++.+...+....+.-++.++|++.+.|+.   
T Consensus        27 ~isc--~~s~--~~~vvigt~~G~V~~Ln~s~-----------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np   91 (933)
T KOG2114|consen   27 AISC--CSSS--TGSVVIGTADGRVVILNSSF-----------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNP   91 (933)
T ss_pred             ceeE--EcCC--CceEEEeeccccEEEecccc-----------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCc
Confidence            4444  4566  47899999999988876542           2246677777664344444445578888877654   


Q ss_pred             --EEEEECCCCCCCCCCCCCCcccc--eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004745          141 --LRQHDFRQGSSCPPAGSSHQECR--NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  216 (732)
Q Consensus       141 --i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~  216 (732)
                        |++|+++..+...     .+.|.  ..++...         .+....++.+++.+.+ -..+|+|-.+|.|..+.=+-
T Consensus        92 ~llkiw~lek~~~n~-----sP~c~~~~ri~~~~---------np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi  156 (933)
T KOG2114|consen   92 VLLKIWDLEKVDKNN-----SPQCLYEHRIFTIK---------NPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDI  156 (933)
T ss_pred             eEEEEecccccCCCC-----CcceeeeeeeeccC---------CCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcc
Confidence              8999998765211     02222  1111111         1234557888899888 78999999999999985332


Q ss_pred             CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          217 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      .+....               ....  ......+|+++++..+++.++-...-..|.+|.+...
T Consensus       157 ~RDrgs---------------r~~~--~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr  203 (933)
T KOG2114|consen  157 LRDRGS---------------RQDY--SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR  203 (933)
T ss_pred             hhcccc---------------ceee--eccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence            111100               0000  1122337999999999987333444458899998843

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.98  E-value=0.047  Score=58.64  Aligned_cols=165  Identities=8%  Similarity=-0.007  Sum_probs=94.6

Q ss_pred             EcCCCCEEEEE-eCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---------------------
Q 004745           27 WNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---------------------   84 (732)
Q Consensus        27 ~s~dg~~lasg-~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---------------------   84 (732)
                      ++|||+.+... -..+.+.+.|..+.+...++..  .+....++++|+  |.++++.+.                     
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spd--Gk~afvTsyNsE~G~tl~em~a~e~d~~vv  275 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYD--GKYAFSTCYNSEEGVTLAEMMAAERDWVVV  275 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEe--CCCcccceECCC--CCEEEEeccCcccCcceeeeccccCceEEE
Confidence            44566655332 2356778888888887777632  224456777887  466655541                     


Q ss_pred             -------------------CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEE
Q 004745           85 -------------------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  145 (732)
Q Consensus        85 -------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd  145 (732)
                                         +++|.+.|..+.....     .. +.....-......+.++|++..+++++..+.+|.|.|
T Consensus       276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~-----~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVID  349 (635)
T PRK02888        276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAG-----SA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVID  349 (635)
T ss_pred             EchHHHHHhhhCCCEEEECCCEEEEEECCccccCC-----cc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence                               1335555544310000     01 1222223556788999998766666677799999999


Q ss_pred             CCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004745          146 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  216 (732)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~  216 (732)
                      +.+.+......   .+....+.          ....-.. .-...+|.++ |+.+.+-.-|..|..|++..
T Consensus       350 v~k~k~~~~~~---~~~~~~vv----------aevevGl-GPLHTaFDg~-G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        350 VRKLDDLFDGK---IKPRDAVV----------AEPELGL-GPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             Chhhhhhhhcc---CCccceEE----------EeeccCC-CcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence            98866321100   01111111          0011111 2234678888 77888888999999999876

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.89  E-value=0.15  Score=47.74  Aligned_cols=61  Identities=10%  Similarity=0.134  Sum_probs=46.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEE-EEecCCCCCEEEEEECCCcEEEEEcCC
Q 004745           31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVVSGAGDAEVRLFNLSR   95 (732)
Q Consensus        31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~-~~s~~~~g~~l~s~~~dg~i~vwd~~~   95 (732)
                      |++++.|...|.+++.+.++|.....+.  -.+.|.+- ...++  +.++..|+.|++...-|.++
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~--~~~~vk~~a~~d~~--~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFV--ILETVKVRAQCDFD--GGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeee--ehhhhccceEEcCC--CceEEEecCCCcEEEecccc
Confidence            5678899999999999999998887773  22333332 23455  47999999999999988886

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.88  E-value=0.13  Score=58.50  Aligned_cols=223  Identities=10%  Similarity=0.040  Sum_probs=122.4

Q ss_pred             CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcE
Q 004745           62 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL  141 (732)
Q Consensus        62 ~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  141 (732)
                      ...|.++.|..+.  +.++.+...|.|.+-|..+..           +.....-...|.+++|+|+. ..++-.+..+++
T Consensus        68 d~~i~s~~fl~d~--~~i~v~~~~G~iilvd~et~~-----------~eivg~vd~GI~aaswS~De-e~l~liT~~~tl  133 (1265)
T KOG1920|consen   68 DDEIVSVQFLADT--NSICVITALGDIILVDPETLE-----------LEIVGNVDNGISAASWSPDE-ELLALITGRQTL  133 (1265)
T ss_pred             CcceEEEEEeccc--ceEEEEecCCcEEEEcccccc-----------eeeeeeccCceEEEeecCCC-cEEEEEeCCcEE
Confidence            3689999999884  778888889999999887632           23333346789999999955 788777777777


Q ss_pred             EEEECCCCCCCCCCCC-----CCcccceEEeeccC-------Ccccc----ccCC--C--CCccceEEEEecCCCCCEEE
Q 004745          142 RQHDFRQGSSCPPAGS-----SHQECRNILLDLRC-------GAKRS----LADP--P--KQTLSLKSCDISSTRPHLLL  201 (732)
Q Consensus       142 ~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~-------~~~~~----~~~~--~--~~~~~v~~i~~~~~~~~~l~  201 (732)
                      .+-. .+-.++.....     ........-|+-+.       |....    ....  .  .....=+++.|-.| |.+++
T Consensus       134 l~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-g~~fA  211 (1265)
T KOG1920|consen  134 LFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-GEYFA  211 (1265)
T ss_pred             EEEe-ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-CcEEE
Confidence            5533 22221110000     00001111111110       00000    0000  0  01112246889888 77888


Q ss_pred             EEe----CC-CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec---CCeEE
Q 004745          202 VGG----SD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVY  273 (732)
Q Consensus       202 tg~----~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~---dg~v~  273 (732)
                      +..    .+ ..|+|||.. +. +.....                    ....--.+++|-|.|..+++-..   |+.|.
T Consensus       212 Vs~~~~~~~~RkirV~drE-g~-Lns~se--------------------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Iv  269 (1265)
T KOG1920|consen  212 VSFVESETGTRKIRVYDRE-GA-LNSTSE--------------------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIV  269 (1265)
T ss_pred             EEEEeccCCceeEEEeccc-ch-hhcccC--------------------cccccccceeecCCCCeEeeeeecCCCCcEE
Confidence            732    23 799999987 32 211100                    00112356999999998877643   56788


Q ss_pred             EEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHH
Q 004745          274 LMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRML  335 (732)
Q Consensus       274 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l  335 (732)
                      +|.-+.-..-.             |.-.....+.++..++|..++..++.-.+......+++
T Consensus       270 ffErNGL~hg~-------------f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~l  318 (1265)
T KOG1920|consen  270 FFERNGLRHGE-------------FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQL  318 (1265)
T ss_pred             EEecCCccccc-------------cccCCcccccchheeeecCCCCceeeeecccccceEEE
Confidence            88766522110             11111122223677788888888873333444444677

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.76  E-value=0.024  Score=61.17  Aligned_cols=72  Identities=13%  Similarity=0.249  Sum_probs=61.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004745           21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR   95 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~   95 (732)
                      .+++++|+|..-.|+.|-.-|.+.+|...+.+. +++...|+.+|..+.|||+  |..++|+..=|.|.+|....
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCcee-eeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeee
Confidence            355699999988899998899999999766544 4444789999999999999  69999999999999998773

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.58  E-value=0.19  Score=56.36  Aligned_cols=147  Identities=14%  Similarity=0.169  Sum_probs=92.2

Q ss_pred             CEEEEE-eCCCcEEEEeCCCCeeEEEEccCCC-cCeEEEEEecCCC-----CCEEEEEECCCcEEEEEcCCCCCCCCCCC
Q 004745           32 SLLISG-SDDTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVPETS-----DELVVSGAGDAEVRLFNLSRFSGRGLDDN  104 (732)
Q Consensus        32 ~~lasg-~~dg~i~vWd~~~~~~~~~~~~~h~-~~V~~~~~s~~~~-----g~~l~s~~~dg~i~vwd~~~~~~~~~~~~  104 (732)
                      +.|+.. .....|+-.|+++|+.+..+ ..|. .+|..+  .|+..     ....+.|-.+..+..||++....+..   
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW-~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v---  567 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEW-KVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV---  567 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEe-ecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCcee---
Confidence            344433 35578899999999999999 4444 335554  44310     23456677889999999996432211   


Q ss_pred             CCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCc
Q 004745          105 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT  184 (732)
Q Consensus       105 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (732)
                       ....+.+ .......|++-+.  ..+||.|+.+|.||+||- .+..                        .....++-.
T Consensus       568 -~~~~k~Y-~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd~-~g~~------------------------AKT~lp~lG  618 (794)
T PF08553_consen  568 -DSQSKQY-SSKNNFSCFATTE--DGYIAVGSNKGDIRLYDR-LGKR------------------------AKTALPGLG  618 (794)
T ss_pred             -ecccccc-ccCCCceEEEecC--CceEEEEeCCCcEEeecc-cchh------------------------hhhcCCCCC
Confidence             0001111 2344566776654  358999999999999993 2221                        111223445


Q ss_pred             cceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004745          185 LSLKSCDISSTRPHLLLVGGSDAFARLYDRR  215 (732)
Q Consensus       185 ~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~  215 (732)
                      .+|.+|..+.| |+++++.+ +..|.+++..
T Consensus       619 ~pI~~iDvt~D-GkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  619 DPIIGIDVTAD-GKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             CCeeEEEecCC-CcEEEEee-cceEEEEEEe
Confidence            69999999999 66666554 5678888863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.58  E-value=0.15  Score=53.91  Aligned_cols=181  Identities=14%  Similarity=0.138  Sum_probs=100.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeEEEEccCCCc------CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCC
Q 004745           33 LLISGSDDTHINVWSYSSRKLLHSIETGHSA------NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI  106 (732)
Q Consensus        33 ~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~------~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  106 (732)
                      .++.++.++.+...|..+|+.+.........      ....+.-+|--.+..++.++.+|.+...|+.+++.        
T Consensus       207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~--------  278 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI--------  278 (394)
T ss_pred             EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE--------
Confidence            4666777889999999998876654211110      01111122210125677778899999999987532        


Q ss_pred             CCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccc
Q 004745          107 TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS  186 (732)
Q Consensus       107 ~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (732)
                        +....  ......+...  + ..++.++.+|.+..+|..+++.              +|......         . ..
T Consensus       279 --~W~~~--~~~~~~~~~~--~-~~vy~~~~~g~l~ald~~tG~~--------------~W~~~~~~---------~-~~  327 (394)
T PRK11138        279 --VWKRE--YGSVNDFAVD--G-GRIYLVDQNDRVYALDTRGGVE--------------LWSQSDLL---------H-RL  327 (394)
T ss_pred             --EEeec--CCCccCcEEE--C-CEEEEEcCCCeEEEEECCCCcE--------------EEcccccC---------C-Cc
Confidence              11111  1111122222  3 4566777899999999988762              22211000         0 01


Q ss_pred             eEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEE
Q 004745          187 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS  266 (732)
Q Consensus       187 v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~  266 (732)
                      ..+....   +..++.++.+|.|++.|..+++.+.+...                   .... ......+  .+..|+++
T Consensus       328 ~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~-------------------~~~~-~~s~P~~--~~~~l~v~  382 (394)
T PRK11138        328 LTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKV-------------------DSSG-FLSEPVV--ADDKLLIQ  382 (394)
T ss_pred             ccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEc-------------------CCCc-ceeCCEE--ECCEEEEE
Confidence            1111122   34788899999999999998875543211                   0000 0111112  24479999


Q ss_pred             ecCCeEEEEEC
Q 004745          267 YSGEHVYLMDV  277 (732)
Q Consensus       267 ~~dg~v~iwd~  277 (732)
                      +.||.|+.++.
T Consensus       383 t~~G~l~~~~~  393 (394)
T PRK11138        383 ARDGTVYAITR  393 (394)
T ss_pred             eCCceEEEEeC
Confidence            99999998864

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.51  E-value=0.095  Score=58.61  Aligned_cols=197  Identities=13%  Similarity=0.132  Sum_probs=111.5

Q ss_pred             hhhccccEeeeccCCc-eeEEEEcC-----CCCEEEEEeCCCcEEEEeCCCC--eeEEEEc--cCCCcCeEEEEEecCCC
Q 004745            6 VRRLSQERELEGHQGC-VNAISWNS-----KGSLLISGSDDTHINVWSYSSR--KLLHSIE--TGHSANVFCTKFVPETS   75 (732)
Q Consensus         6 ~~~~~~~~~l~~h~~~-V~~l~~s~-----dg~~lasg~~dg~i~vWd~~~~--~~~~~~~--~~h~~~V~~~~~s~~~~   75 (732)
                      +.+++.+..++.|... |..++=..     +....+.|-.++.+..||++-.  +++..-.  ........|++-+.+  
T Consensus       511 Le~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~--  588 (794)
T PF08553_consen  511 LERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED--  588 (794)
T ss_pred             cCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC--
Confidence            4567888889888755 55554321     2334566778889999998743  2332110  123455677777766  


Q ss_pred             CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC--CCC--
Q 004745           76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ--GSS--  151 (732)
Q Consensus        76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~--~~~--  151 (732)
                       .+||.|+.+|.||+||--. .         .....+.+...+|.+|..+.+| ++++..+ +..|.+++..-  ++.  
T Consensus       589 -G~iavgs~~G~IRLyd~~g-~---------~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~t~~~~g~~~g  655 (794)
T PF08553_consen  589 -GYIAVGSNKGDIRLYDRLG-K---------RAKTALPGLGDPIIGIDVTADG-KWILATC-KTYLLLIDTLIKDGKNSG  655 (794)
T ss_pred             -ceEEEEeCCCcEEeecccc-h---------hhhhcCCCCCCCeeEEEecCCC-cEEEEee-cceEEEEEEeeecCCccC
Confidence             5899999999999998431 1         1134556778999999999966 6554433 46888988642  211  


Q ss_pred             -CCC--CCCCCcccceEEeeccCCccccccCCCCCccceEEEEecC--CCCCEEEEEeCCCeEEEEECCCC
Q 004745          152 -CPP--AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRML  217 (732)
Q Consensus       152 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~l~tg~~dg~v~iwd~~~~  217 (732)
                       ...  .+.....+.-..+.+...+...+....+.....+...|+.  +.....++.+....+.+|+++.-
T Consensus       656 ~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV  726 (794)
T PF08553_consen  656 KLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKKV  726 (794)
T ss_pred             ccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHHH
Confidence             111  1111111122222222222212211112333445556653  11234445556778999998754

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.014  Score=61.09  Aligned_cols=95  Identities=17%  Similarity=0.234  Sum_probs=74.4

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeE-EEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF-CTKFVPETSDELVVSGAGDAEVRLFNLSRFS   97 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~-~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~   97 (732)
                      ...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++ .-|...++ +++|.|+  |+.|+.|-.||+|++.|+.++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~D--GkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPD--GKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCC--CCEEEEEecCCeEEEEEccCCC
Confidence            4567889999999999999999999999988 8888888 44666666 9999999  6999999999999999999753


Q ss_pred             CCCCCCCCCCCceeeccccCceeEEEEec
Q 004745           98 GRGLDDNAITPSALYQCHTRRVKKLAVEV  126 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p  126 (732)
                      ...         .....-...|.++-|.+
T Consensus        96 ~l~---------~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLV---------SFLFSVETDISKGIWDR  115 (665)
T ss_pred             cee---------ccccccccchheeeccc
Confidence            311         11122345666676754

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.43  E-value=0.39  Score=50.07  Aligned_cols=116  Identities=11%  Similarity=0.147  Sum_probs=73.9

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE------------------------------------------EEEc
Q 004745           21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL------------------------------------------HSIE   58 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~------------------------------------------~~~~   58 (732)
                      .|+.+.|+++..-|++|...|.|.||.+...+.-                                          ..+.
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5889999999888999999999999975321100                                          0111


Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeec------cccCceeEEEEec----CC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEV----GN  128 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p----~~  128 (732)
                      ....++|++++.|.-   .+++.|..+|.+.|.|++.+.--        ....+.      .....++++.|..    ++
T Consensus        83 ~~~~g~vtal~~S~i---GFvaigy~~G~l~viD~RGPavI--------~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D  151 (395)
T PF08596_consen   83 DAKQGPVTALKNSDI---GFVAIGYESGSLVVIDLRGPAVI--------YNENIRESFLSKSSSSYVTSIEFSVMTLGGD  151 (395)
T ss_dssp             ---S-SEEEEEE-BT---SEEEEEETTSEEEEEETTTTEEE--------EEEEGGG--T-SS----EEEEEEEEEE-TTS
T ss_pred             eccCCcEeEEecCCC---cEEEEEecCCcEEEEECCCCeEE--------eeccccccccccccccCeeEEEEEEEecCCC
Confidence            234689999999866   59999999999999999853210        001111      1234677888862    12


Q ss_pred             C---cEEEEEeCCCcEEEEECC
Q 004745          129 P---HVVWSASEDGTLRQHDFR  147 (732)
Q Consensus       129 ~---~~l~s~s~dg~i~vwd~~  147 (732)
                      +   -+++.|...|.+.+|.+.
T Consensus       152 ~ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  152 GYSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             SSEEEEEEEEETTSEEEEEEEE
T ss_pred             cccceEEEEEeCCCCEEEEEEe
Confidence            1   367788999999999875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.42  E-value=0.17  Score=53.31  Aligned_cols=124  Identities=14%  Similarity=0.182  Sum_probs=74.7

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEe---CC-CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGS---DD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~---~d-g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      .+.+..-...+..-+|+|+++.++--+   .. ..+.++|+.+++.....  ...+.-..-+|+|++ ..++++...||.
T Consensus       185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--~~~g~~~~P~fspDG-~~l~f~~~rdg~  261 (425)
T COG0823         185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--NFNGNNGAPAFSPDG-SKLAFSSSRDGS  261 (425)
T ss_pred             eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--ccCCccCCccCCCCC-CEEEEEECCCCC
Confidence            344444556677778999998766542   22 45999999988765554  233444567899995 245566667777


Q ss_pred             EEEE--EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEE--EECCCC
Q 004745           88 VRLF--NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ--HDFRQG  149 (732)
Q Consensus        88 i~vw--d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~v--wd~~~~  149 (732)
                      ..||  |+....           +..+..-.+.-+.=.|+|++..++++....|.-.|  +++...
T Consensus       262 ~~iy~~dl~~~~-----------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         262 PDIYLMDLDGKN-----------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             ccEEEEcCCCCc-----------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence            5555  555432           12222222222356789988666666666666444  454444

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.36  E-value=0.08  Score=54.93  Aligned_cols=183  Identities=15%  Similarity=0.162  Sum_probs=97.6

Q ss_pred             cCCCCEEEEE---------eCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           28 NSKGSLLISG---------SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        28 s~dg~~lasg---------~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      |||+++++..         +..+.+.|+|+.+++.....  .....+....|+|+  |+.++-.. ++.|.++++.++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~--~~~~~~~~~~~sP~--g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT--PPPPKLQDAKWSPD--GKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---EETTBSEEEE-SS--STEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc--CCccccccceeecC--CCeeEEEe-cCceEEEECCCCCe
Confidence            6788877763         22467899999997665543  22567899999999  57887765 67899998875422


Q ss_pred             CCCCCCCCCCceeeccc---------cCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCC------------CCCCC
Q 004745           99 RGLDDNAITPSALYQCH---------TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC------------PPAGS  157 (732)
Q Consensus        99 ~~~~~~~~~~~~~~~~h---------~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~------------~~~~~  157 (732)
                      ..+....  .-..+.|-         -+.-..+-|+|++..++..--.+..|..+.+......            ++...
T Consensus        76 ~~lT~dg--~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~  153 (353)
T PF00930_consen   76 TQLTTDG--EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD  153 (353)
T ss_dssp             EESES----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred             EEecccc--ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence            1110000  00001111         1223568899977444444445555555543222111            11222


Q ss_pred             CCcccceEEeeccCCccccccCC---CCCccceEEEEecCCCCCEEEEE--eCC---CeEEEEECCCCC
Q 004745          158 SHQECRNILLDLRCGAKRSLADP---PKQTLSLKSCDISSTRPHLLLVG--GSD---AFARLYDRRMLP  218 (732)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~tg--~~d---g~v~iwd~~~~~  218 (732)
                      ........++++.++....+..+   ......+..+.|.++ +..|+..  ..+   ..+.+.|..++.
T Consensus       154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d-~~~l~~~~~nR~q~~~~l~~~d~~tg~  221 (353)
T PF00930_consen  154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPD-GKRLWVQWLNRDQNRLDLVLCDASTGE  221 (353)
T ss_dssp             ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEET-TEEEEEEEEETTSTEEEEEEEEECTTT
T ss_pred             cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCC-CcEEEEEEcccCCCEEEEEEEECCCCc
Confidence            22444556677877765444433   344668899999998 5534333  222   236666776643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.91  Score=47.53  Aligned_cols=203  Identities=14%  Similarity=0.132  Sum_probs=126.0

Q ss_pred             eEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCC
Q 004745           23 NAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSG   98 (732)
Q Consensus        23 ~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd~~~~~~   98 (732)
                      ..+++++++. ..++...++.|.+.|..+.+.......+.  ....++++|+.  +.+..+..   ++++.+.|..+...
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~--~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDG--KYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCC--CEEEEEecccCCceEEEEeCCCCeE
Confidence            4677888887 44455556899999988888887774444  56789999994  55555443   67788888775321


Q ss_pred             CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004745           99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  178 (732)
Q Consensus        99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (732)
                                +.....-..+ ..+++.|++...+++-..++.|.+.|........ .               ..     .
T Consensus       153 ----------~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---------------~~-----~  200 (381)
T COG3391         153 ----------TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G---------------SV-----G  200 (381)
T ss_pred             ----------EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c---------------cc-----c
Confidence                      2332221233 8899999775566666688999999966554210 0               00     0


Q ss_pred             CCCCCccceEEEEecCCCCCEEEEEeCC--CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004745          179 DPPKQTLSLKSCDISSTRPHLLLVGGSD--AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  256 (732)
Q Consensus       179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  256 (732)
                      ........-..+.++|++.+..++-..+  +.+...|..+......-.                   ..... ....+.+
T Consensus       201 ~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~-------------------~~~~~-~~~~v~~  260 (381)
T COG3391         201 SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL-------------------PVGSG-APRGVAV  260 (381)
T ss_pred             cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc-------------------ccccC-CCCceeE
Confidence            0000111335678889843344443333  588889888764332100                   00111 2445899


Q ss_pred             cCCCCEEEEEec-CCeEEEEECCCCC
Q 004745          257 SPNGEEVLLSYS-GEHVYLMDVNHAG  281 (732)
Q Consensus       257 sp~g~~l~~~~~-dg~v~iwd~~~~~  281 (732)
                      +|+|+.+.+... .+.|.+.|..+..
T Consensus       261 ~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         261 DPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             CCCCCEEEEEecCCCeEEEEeCCCCc
Confidence            999999988855 5899999888743

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.27  E-value=0.036  Score=58.93  Aligned_cols=116  Identities=16%  Similarity=0.180  Sum_probs=81.1

Q ss_pred             EEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEE
Q 004745          123 AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV  202 (732)
Q Consensus       123 ~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t  202 (732)
                      ++.. ...+++.|+.-|.+++|+-..++......                        .+....+..+..+++ .+++|.
T Consensus        40 c~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~------------------------~~~~~~~~~~~vs~~-e~lvAa   93 (726)
T KOG3621|consen   40 CVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKN------------------------EGATGITCVRSVSSV-EYLVAA   93 (726)
T ss_pred             Eeec-CCceEEEecccceEEEEecCchhhhcccc------------------------cCccceEEEEEecch-hHhhhh
Confidence            3444 44899999999999999987766331111                        112335566777887 678899


Q ss_pred             EeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          203 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       203 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      |+..|.|.++-++...+-..           .++.+.+   ..| ...|++++|++++..+++|...|+|.+-.+.+
T Consensus        94 gt~~g~V~v~ql~~~~p~~~-----------~~~t~~d---~~~-~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   94 GTASGRVSVFQLNKELPRDL-----------DYVTPCD---KSH-KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hcCCceEEeehhhccCCCcc-----------eeecccc---ccC-CceEEEEEecccccEEeecCCCceEEEEEech
Confidence            99999999998876432211           1111111   113 33699999999999999999999999988877

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.25  E-value=0.011  Score=61.74  Aligned_cols=72  Identities=15%  Similarity=0.104  Sum_probs=64.8

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEE-EEeecCCCCeEEEecCCCcEEEEcCCCCCCcccc
Q 004745          604 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVN-CVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVS  676 (732)
Q Consensus       604 ~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~-~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~  676 (732)
                      |+|--..+|.+-.+|.|-+.-+. .+.+.++.-|...|+ +++|-|||++||.|=.||+|++-|+.++..+..+
T Consensus        28 wnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   28 WNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             EcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            69999999999999999888877 777888887877777 9999999999999999999999999999988763

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.18  E-value=0.0049  Score=66.59  Aligned_cols=93  Identities=16%  Similarity=0.157  Sum_probs=77.0

Q ss_pred             cccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecC-CC
Q 004745          582 IDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGI-DN  660 (732)
Q Consensus       582 ~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~-D~  660 (732)
                      ++..++|..|...-+|+.    ||.+.++|+.|+..|.|+++++.+|.......+|...||-|.-+-||.++++.+. ..
T Consensus      1091 Fr~w~~frd~~~~fTc~a----fs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIA----FSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred             cccchhhhccccceeeEE----eecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC
Confidence            567788888887766666    7999999999999999999999999999999999999999999999985555544 33


Q ss_pred             -cEEEEcCC-CCCCccccCC
Q 004745          661 -TIKIWTPS-ASVPSIVSGG  678 (732)
Q Consensus       661 -~i~vW~~~-~~~~~~~~~g  678 (732)
                       ...+|+.. ++.+..+|.+
T Consensus      1167 PlsaLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred             chHHHhccccccCccccccc
Confidence             47899987 4445556654

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.16  E-value=0.35  Score=52.26  Aligned_cols=84  Identities=14%  Similarity=0.154  Sum_probs=53.3

Q ss_pred             ceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEE
Q 004745          186 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  265 (732)
Q Consensus       186 ~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~  265 (732)
                      ....+.++||+...++++..+++|.|.|+.+.+....  ....+..++..-.+     .   +......+|.++|....+
T Consensus       322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~--~~~~~~~~vvaeve-----v---GlGPLHTaFDg~G~ayts  391 (635)
T PRK02888        322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD--GKIKPRDAVVAEPE-----L---GLGPLHTAFDGRGNAYTT  391 (635)
T ss_pred             CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh--ccCCccceEEEeec-----c---CCCcceEEECCCCCEEEe
Confidence            4578999999544555556689999999988654211  11111111111100     1   112345789999987777


Q ss_pred             EecCCeEEEEECCC
Q 004745          266 SYSGEHVYLMDVNH  279 (732)
Q Consensus       266 ~~~dg~v~iwd~~~  279 (732)
                      ..-|.+|-.||+..
T Consensus       392 lf~dsqv~kwn~~~  405 (635)
T PRK02888        392 LFLDSQIVKWNIEA  405 (635)
T ss_pred             EeecceeEEEehHH
Confidence            77799999999987

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.16  E-value=0.99  Score=48.10  Aligned_cols=117  Identities=13%  Similarity=0.117  Sum_probs=67.8

Q ss_pred             ceeEEEEcCCCCEEEEE-eCC----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC---------
Q 004745           21 CVNAISWNSKGSLLISG-SDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---------   86 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg-~~d----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg---------   86 (732)
                      .+..+.+||||++||-+ +..    ..|++.|+.+++.+......  ..-..+.|.+++  +.|+....+.         
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~--~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDG--KGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTS--SEEEEEECSTTTSS-CCGC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCC--CEEEEEEeCcccccccCCC
Confidence            33467899999988865 333    35999999999876543121  112349999994  5555444332         


Q ss_pred             --cEEEEEcCCCCCCCCCCCCCCCceeeccccC--ceeEEEEecCCCcEEEEEeCCC---cEEEEECCCC
Q 004745           87 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTR--RVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQG  149 (732)
Q Consensus        87 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~~l~s~s~dg---~i~vwd~~~~  149 (732)
                        .|+.|.+.+.....        ...+.+...  ....+..++++..+++......   .+.+.|+...
T Consensus       201 ~~~v~~~~~gt~~~~d--------~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSED--------ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             CEEEEEEETTS-GGG---------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             CcEEEEEECCCChHhC--------eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence              27777877643221        123332222  2567888886644444444433   4777787764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.13  E-value=0.019  Score=38.80  Aligned_cols=35  Identities=20%  Similarity=0.429  Sum_probs=30.5

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL   54 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~   54 (732)
                      ...|.+++|+|...+||.|..+|.|.|+.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            457999999999999999999999999998 55543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.08  E-value=0.0093  Score=54.58  Aligned_cols=108  Identities=11%  Similarity=0.040  Sum_probs=62.4

Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC
Q 004745          128 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  207 (732)
Q Consensus       128 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg  207 (732)
                      ....++.|+.+|.|.+|.........              +.       +.   .....|.++--.-+.+.+..+++.||
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~--------------d~-------~~---s~~e~i~~~Ip~~~~~~~~c~~~~dg  124 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHS--------------DR-------VC---SGEESIDLGIPNGRDSSLGCVGAQDG  124 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHH--------------Hh-------hh---cccccceeccccccccceeEEeccCC
Confidence            34678899999999999886322110              00       00   00112222222222255888999999


Q ss_pred             eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEE--ecCCeEEEEECCC
Q 004745          208 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS--YSGEHVYLMDVNH  279 (732)
Q Consensus       208 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~--~~dg~v~iwd~~~  279 (732)
                      .||.|++.-.+.+...                    .+|...++..+.....++.|..+  +.|..++.|++..
T Consensus       125 ~ir~~n~~p~k~~g~~--------------------g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  125 RIRACNIKPNKVLGYV--------------------GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeeeccccCceeeee--------------------ccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            9999998765433211                    22221345555555666666666  6677777777765

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.93  E-value=0.37  Score=46.44  Aligned_cols=182  Identities=16%  Similarity=0.128  Sum_probs=87.3

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceee--ccccCceeEEEEecCCCcEEEEEe
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSAS  136 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s  136 (732)
                      .+-...+.++.|.|+. +.+++.....+.|...+..   ++.        +..+  .+ ....-.|++.. ++.++++--
T Consensus        18 ~g~~~e~SGLTy~pd~-~tLfaV~d~~~~i~els~~---G~v--------lr~i~l~g-~~D~EgI~y~g-~~~~vl~~E   83 (248)
T PF06977_consen   18 PGILDELSGLTYNPDT-GTLFAVQDEPGEIYELSLD---GKV--------LRRIPLDG-FGDYEGITYLG-NGRYVLSEE   83 (248)
T ss_dssp             TT--S-EEEEEEETTT-TEEEEEETTTTEEEEEETT-----E--------EEEEE-SS--SSEEEEEE-S-TTEEEEEET
T ss_pred             CCccCCccccEEcCCC-CeEEEEECCCCEEEEEcCC---CCE--------EEEEeCCC-CCCceeEEEEC-CCEEEEEEc
Confidence            4555669999999985 4566666677777777764   222        3333  33 35678888876 436666555


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004745          137 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  216 (732)
Q Consensus       137 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~  216 (732)
                      .++.+.++++........     .   ....      ...+.....+...+-.++|+|.+ +.|+++-...-.++|.++.
T Consensus        84 r~~~L~~~~~~~~~~~~~-----~---~~~~------~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   84 RDQRLYIFTIDDDTTSLD-----R---ADVQ------KISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNG  148 (248)
T ss_dssp             TTTEEEEEEE----TT-------E---EEEE------EEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEES
T ss_pred             CCCcEEEEEEeccccccc-----h---hhce------EEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEcc
Confidence            688999999855331100     0   0000      00112223345578999999984 5555555555566776654


Q ss_pred             CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Q 004745          217 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~  279 (732)
                      ...-          ..+.................+.+++++|... +++.+..+..|.++|...
T Consensus       149 ~~~~----------~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G  202 (248)
T PF06977_consen  149 FPGG----------FDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG  202 (248)
T ss_dssp             TT-S----------S--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT-
T ss_pred             ccCc----------cceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC
Confidence            1100          0000000000000000111378899999655 455555578888888443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.85  E-value=0.34  Score=49.54  Aligned_cols=186  Identities=14%  Similarity=0.134  Sum_probs=107.1

Q ss_pred             CcEEEEeCCCCeeEEEEccCCCcCeEEEEEec---CC--CCCEEEEEEC---------C-CcEEEEEcCCCCCCCCCCCC
Q 004745           41 THINVWSYSSRKLLHSIETGHSANVFCTKFVP---ET--SDELVVSGAG---------D-AEVRLFNLSRFSGRGLDDNA  105 (732)
Q Consensus        41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~---~~--~g~~l~s~~~---------d-g~i~vwd~~~~~~~~~~~~~  105 (732)
                      ..|++.|..+.+.+..+.-.....+++++...   +.  ...+|+.|..         . |.|.++++.......   .+
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~---~~   78 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN---FK   78 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------E
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc---eE
Confidence            35899998888877766434445566655443   10  1267777743         2 889999998630000   00


Q ss_pred             CCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCcc
Q 004745          106 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  185 (732)
Q Consensus       106 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (732)
                      .+.+.. ....++|+++.-.  ++. |+.+. ++.|.+|++...+..           .           ...... ...
T Consensus        79 l~~i~~-~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l-----------~-----------~~~~~~-~~~  130 (321)
T PF03178_consen   79 LKLIHS-TEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTL-----------L-----------KKAFYD-SPF  130 (321)
T ss_dssp             EEEEEE-EEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSE-----------E-----------EEEEE--BSS
T ss_pred             EEEEEE-EeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccc-----------h-----------hhheec-ceE
Confidence            111222 2357889998876  334 43433 478999999877611           0           000000 112


Q ss_pred             ceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEE
Q 004745          186 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL  264 (732)
Q Consensus       186 ~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~  264 (732)
                      .+.++...   ++++++|.....+.++..+... .+..+.                   ......+++++.|-++++.++
T Consensus       131 ~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~~l~~va-------------------~d~~~~~v~~~~~l~d~~~~i  188 (321)
T PF03178_consen  131 YITSLSVF---KNYILVGDAMKSVSLLRYDEENNKLILVA-------------------RDYQPRWVTAAEFLVDEDTII  188 (321)
T ss_dssp             SEEEEEEE---TTEEEEEESSSSEEEEEEETTTE-EEEEE-------------------EESS-BEEEEEEEE-SSSEEE
T ss_pred             EEEEEecc---ccEEEEEEcccCEEEEEEEccCCEEEEEE-------------------ecCCCccEEEEEEecCCcEEE
Confidence            56666665   4589999888888887544311 111110                   001122589999987778899


Q ss_pred             EEecCCeEEEEECCC
Q 004745          265 LSYSGEHVYLMDVNH  279 (732)
Q Consensus       265 ~~~~dg~v~iwd~~~  279 (732)
                      ++..+|.+.++....
T Consensus       189 ~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  189 VGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEETTSEEEEEEE-S
T ss_pred             EEcCCCeEEEEEECC
Confidence            999999999998864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.80  E-value=0.91  Score=46.40  Aligned_cols=147  Identities=14%  Similarity=0.141  Sum_probs=88.4

Q ss_pred             CCEEEEEeC---------C-CcEEEEeCCCC-----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004745           31 GSLLISGSD---------D-THINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR   95 (732)
Q Consensus        31 g~~lasg~~---------d-g~i~vWd~~~~-----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~   95 (732)
                      ..+|+.|..         . |.|.++++...     +..........++|++++--.+   . |+.+. .+.|.+|++..
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~---~-lv~~~-g~~l~v~~l~~  116 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNG---R-LVVAV-GNKLYVYDLDN  116 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETT---E-EEEEE-TTEEEEEEEET
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCC---E-EEEee-cCEEEEEEccC
Confidence            467887743         2 88999999884     2222222356788999987732   4 44443 58899999986


Q ss_pred             CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004745           96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  175 (732)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (732)
                      .+. .      .....+. ....+.++...  + ++++.|.....+.++........           ..+.        
T Consensus       117 ~~~-l------~~~~~~~-~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~-----------l~~v--------  166 (321)
T PF03178_consen  117 SKT-L------LKKAFYD-SPFYITSLSVF--K-NYILVGDAMKSVSLLRYDEENNK-----------LILV--------  166 (321)
T ss_dssp             TSS-E------EEEEEE--BSSSEEEEEEE--T-TEEEEEESSSSEEEEEEETTTE------------EEEE--------
T ss_pred             ccc-c------hhhheec-ceEEEEEEecc--c-cEEEEEEcccCEEEEEEEccCCE-----------EEEE--------
Confidence            430 0      1122222 23366666665  3 58888888788887755442100           0000        


Q ss_pred             cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004745          176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  216 (732)
Q Consensus       176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~  216 (732)
                        .. ......++++.|-+++ +.++++..+|.+.++....
T Consensus       167 --a~-d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  167 --AR-DYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             --EE-ESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-S
T ss_pred             --Ee-cCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECC
Confidence              00 0123368899998774 6999999999999998763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.72  E-value=1.5  Score=45.40  Aligned_cols=70  Identities=10%  Similarity=0.157  Sum_probs=44.2

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCC----------------CcCeEEEEEecCCCCCEEEEE
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH----------------SANVFCTKFVPETSDELVVSG   82 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h----------------~~~V~~~~~s~~~~g~~l~s~   82 (732)
                      ...+....|||+|+.+|-.. ++.|.+++..+++..+....+-                -+.-..+-|||++  ++|+..
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~--~~la~~  118 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS--KYLAFL  118 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS--SEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCC--CEEEEE
Confidence            56789999999999999885 5789999988775544332220                1123568899995  777665


Q ss_pred             EC-CCcEEEE
Q 004745           83 AG-DAEVRLF   91 (732)
Q Consensus        83 ~~-dg~i~vw   91 (732)
                      .. +..|+.+
T Consensus       119 ~~d~~~v~~~  128 (353)
T PF00930_consen  119 RFDEREVPEY  128 (353)
T ss_dssp             EEE-TTS-EE
T ss_pred             EECCcCCceE
Confidence            43 3444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.65  E-value=0.14  Score=57.37  Aligned_cols=75  Identities=31%  Similarity=0.532  Sum_probs=57.4

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecC-CCCCEEEEEECCCcEEEEEcCC
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSGAGDAEVRLFNLSR   95 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~-~~g~~l~s~~~dg~i~vwd~~~   95 (732)
                      -.++|++++|+.+|+.++.|-.+|.|.+||+.+++.++.+ ..|..+++++-++-- +.+..++++..-|.  +|.+.-
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i-~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~  204 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI-TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVF  204 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee-eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence            3689999999999999999999999999999999988888 566666655544321 11256888777775  676653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.59  E-value=0.35  Score=51.14  Aligned_cols=144  Identities=18%  Similarity=0.162  Sum_probs=77.0

Q ss_pred             CCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc
Q 004745           61 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT  140 (732)
Q Consensus        61 h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  140 (732)
                      .......+.++|+  |++++. +.||.-.|+....             ...  ...+.-..+.|.+ . +.+|+-...+.
T Consensus        31 ~~~~p~~ls~npn--gr~v~V-~g~geY~iyt~~~-------------~r~--k~~G~g~~~vw~~-~-n~yAv~~~~~~   90 (443)
T PF04053_consen   31 CEIYPQSLSHNPN--GRFVLV-CGDGEYEIYTALA-------------WRN--KAFGSGLSFVWSS-R-NRYAVLESSST   90 (443)
T ss_dssp             -SS--SEEEE-TT--SSEEEE-EETTEEEEEETTT-------------TEE--EEEEE-SEEEE-T-S-SEEEEE-TTS-
T ss_pred             CCcCCeeEEECCC--CCEEEE-EcCCEEEEEEccC-------------Ccc--cccCceeEEEEec-C-ccEEEEECCCe
Confidence            3445789999998  477777 4578888887332             111  1234556788988 3 45777777888


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCC
Q 004745          141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  220 (732)
Q Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~  220 (732)
                      |.++.--+.+..                      ..+. .+   ..+..+-.    |.+|...+.+ .|.+||..+.+.+
T Consensus        91 I~I~kn~~~~~~----------------------k~i~-~~---~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i  139 (443)
T PF04053_consen   91 IKIYKNFKNEVV----------------------KSIK-LP---FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLI  139 (443)
T ss_dssp             EEEEETTEE-TT----------------------------S---S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EE
T ss_pred             EEEEEcCccccc----------------------eEEc-CC---cccceEEc----CcEEEEECCC-CEEEEEhhHccee
Confidence            999632222210                      0000 00   02222221    5567666654 8999999998776


Q ss_pred             cccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          221 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .++.                      .. +|..+.|+++|++++..+.+ .++|++.+.
T Consensus       140 ~~i~----------------------v~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  140 RRID----------------------VS-AVKYVIWSDDGELVALVTKD-SIYILKYNL  174 (443)
T ss_dssp             EEES----------------------S--E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred             eEEe----------------------cC-CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence            6542                      11 37899999999998888765 777776544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.57  E-value=2.8  Score=44.25  Aligned_cols=34  Identities=3%  Similarity=-0.052  Sum_probs=27.9

Q ss_pred             cceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004745          185 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  219 (732)
Q Consensus       185 ~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~  219 (732)
                      .++..|+.||+ ++++|.-..+|.+.+.+..-.+.
T Consensus       217 ~~i~~iavSpn-g~~iAl~t~~g~l~v~ssDf~~~  250 (410)
T PF04841_consen  217 GPIIKIAVSPN-GKFIALFTDSGNLWVVSSDFSEK  250 (410)
T ss_pred             CCeEEEEECCC-CCEEEEEECCCCEEEEECcccce
Confidence            37899999999 78999999999999987654433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.55  E-value=0.015  Score=62.62  Aligned_cols=76  Identities=11%  Similarity=0.027  Sum_probs=66.1

Q ss_pred             eeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCcc
Q 004745          598 IKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSI  674 (732)
Q Consensus       598 i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~  674 (732)
                      ..++| |.|..-.||+|=.-|-+.+|...+.+.......|...|..|.|||+|..|+|+..=|.|.+|....-..++
T Consensus        62 atSLC-WHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q  137 (1416)
T KOG3617|consen   62 ATSLC-WHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQ  137 (1416)
T ss_pred             hhhhc-cChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccc
Confidence            33455 59988899999999999999999888877788899999999999999999999999999999988544443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.49  E-value=0.64  Score=49.02  Aligned_cols=169  Identities=14%  Similarity=0.146  Sum_probs=93.9

Q ss_pred             CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE--CC--CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEec
Q 004745           51 RKLLHSIETGHSANVFCTKFVPETSDELVVSGA--GD--AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV  126 (732)
Q Consensus        51 ~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~--~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p  126 (732)
                      +.....+ ..-...+..-+|+|++  ..++...  ..  ..+.++++.++....        +..+.++   -..-+|+|
T Consensus       182 g~~~~~l-~~~~~~~~~p~ws~~~--~~~~y~~f~~~~~~~i~~~~l~~g~~~~--------i~~~~g~---~~~P~fsp  247 (425)
T COG0823         182 GYNQQKL-TDSGSLILTPAWSPDG--KKLAYVSFELGGCPRIYYLDLNTGKRPV--------ILNFNGN---NGAPAFSP  247 (425)
T ss_pred             CcceeEe-cccCcceeccccCcCC--CceEEEEEecCCCceEEEEeccCCccce--------eeccCCc---cCCccCCC
Confidence            4444444 3344566777899985  4443332  22  358899998765422        3344443   34568999


Q ss_pred             CCCcEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe
Q 004745          127 GNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG  204 (732)
Q Consensus       127 ~~~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~  204 (732)
                      ++..++++...||.  |.+.|+......                       .+....+   .-..=.|+|++..+.++.+
T Consensus       248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~-----------------------~Lt~~~g---i~~~Ps~spdG~~ivf~Sd  301 (425)
T COG0823         248 DGSKLAFSSSRDGSPDIYLMDLDGKNLP-----------------------RLTNGFG---INTSPSWSPDGSKIVFTSD  301 (425)
T ss_pred             CCCEEEEEECCCCCccEEEEcCCCCcce-----------------------ecccCCc---cccCccCCCCCCEEEEEeC
Confidence            88777888888886  455566655421                       0111111   1124568999554455555


Q ss_pred             CCCe--EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC-Ce--EEEEECCC
Q 004745          205 SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-EH--VYLMDVNH  279 (732)
Q Consensus       205 ~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d-g~--v~iwd~~~  279 (732)
                      ..|.  |.++|+..... ..+.                  ..+..   -..-.|+|+|++|+..+.. |.  |.+.|+.+
T Consensus       302 r~G~p~I~~~~~~g~~~-~riT------------------~~~~~---~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         302 RGGRPQIYLYDLEGSQV-TRLT------------------FSGGG---NSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             CCCCcceEEECCCCCce-eEee------------------ccCCC---CcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence            5665  44445554332 1110                  01111   1156889999998887753 44  66666666


Q ss_pred             CC
Q 004745          280 AG  281 (732)
Q Consensus       280 ~~  281 (732)
                      +.
T Consensus       360 ~~  361 (425)
T COG0823         360 GG  361 (425)
T ss_pred             CC
Confidence            44

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.44  E-value=0.018  Score=52.74  Aligned_cols=69  Identities=12%  Similarity=0.119  Sum_probs=58.5

Q ss_pred             CCCCEEEEecCCCcEEEEEcCcccEEEEEecCc-ccEEEEeecCCCCeEEEe--cCCCcEEEEcCCCCCCcc
Q 004745          606 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVATS--GIDNTIKIWTPSASVPSI  674 (732)
Q Consensus       606 ~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~-~~V~~v~fsp~~~~l~S~--s~D~~i~vW~~~~~~~~~  674 (732)
                      .++.+..+|+.||.|+.|+++-.+.+...-.|+ ..+..+..+..+..|+++  |.|..++.|++..-....
T Consensus       112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~  183 (238)
T KOG2444|consen  112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDES  183 (238)
T ss_pred             cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhccC
Confidence            456688999999999999999999999888898 778888888888888888  889999999887666543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.30  E-value=0.48  Score=53.26  Aligned_cols=103  Identities=13%  Similarity=0.137  Sum_probs=61.6

Q ss_pred             CccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC--
Q 004745          183 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN--  259 (732)
Q Consensus       183 ~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~--  259 (732)
                      -...|..+.++|+ |.+++..|..| |.|-.+.. ......+......-.|-.......+... .....|..+.|+|.  
T Consensus        83 ~~f~v~~i~~n~~-g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~-~~~~~i~qv~WhP~s~  159 (717)
T PF10168_consen   83 PLFEVHQISLNPT-GSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTS-NSSLEIKQVRWHPWSE  159 (717)
T ss_pred             CceeEEEEEECCC-CCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccC-CCCceEEEEEEcCCCC
Confidence            4468999999999 78888888766 44544432 1111111111111123222212222212 22336999999996  


Q ss_pred             -CCEEEEEecCCeEEEEECCCCCCcceeee
Q 004745          260 -GEEVLLSYSGEHVYLMDVNHAGGRAMRYT  288 (732)
Q Consensus       260 -g~~l~~~~~dg~v~iwd~~~~~~~~~~~~  288 (732)
                       +.+|++-+.|+++|+||+.....+.....
T Consensus       160 ~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  160 SDSHLVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             CCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence             58999999999999999987665554443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.24  E-value=1.4  Score=43.97  Aligned_cols=219  Identities=12%  Similarity=0.122  Sum_probs=115.1

Q ss_pred             eEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCC
Q 004745           23 NAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  100 (732)
Q Consensus        23 ~~l~~s~dg~~lasg~--~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~  100 (732)
                      ..++++.||+++....  --..|.|-|+..++.+.++.  -.+   |.-.-|.+ ...+.+-+.||.+.-..+... ++.
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PG---C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~-Gk~  170 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID--TPG---CWLIYPSG-NRGFSMLCGDGSLLTVTLDAD-GKE  170 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--GTS---EEEEEEEE-TTEEEEEETTSCEEEEEETST-SSE
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--CCC---EEEEEecC-CCceEEEecCCceEEEEECCC-CCE
Confidence            3468889999887764  34579999999999998883  222   22223433 256888889999999998853 221


Q ss_pred             CCCCCCCCceeeccccCcee-EEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004745          101 LDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  179 (732)
Q Consensus       101 ~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (732)
                      .    ......+....+++. .-++...+ ..++--+.+|.|+--|+......          ...-|.+.+...+.-  
T Consensus       171 ~----~~~t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~----------~~~~~~~~t~~e~~~--  233 (342)
T PF06433_consen  171 A----QKSTKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAK----------FGKPWSLLTDAEKAD--  233 (342)
T ss_dssp             E----EEEEEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEE----------EEEEEESS-HHHHHT--
T ss_pred             e----EeeccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCccc----------ccCcccccCcccccc--
Confidence            1    000111111122221 22333323 34444678888988888665411          011111111000000  


Q ss_pred             CCCCccceEEEEecCCCCCEEEEE--e-----CCC--eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004745          180 PPKQTLSLKSCDISSTRPHLLLVG--G-----SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  250 (732)
Q Consensus       180 ~~~~~~~v~~i~~~~~~~~~l~tg--~-----~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (732)
                       .=..+...-+++++..+++++.-  +     .|+  .|-++|+.+.+.+..+..                      ..+
T Consensus       234 -~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----------------------~~~  290 (342)
T PF06433_consen  234 -GWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----------------------EHP  290 (342)
T ss_dssp             -TEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----------------------EEE
T ss_pred             -CcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC----------------------CCc
Confidence             00111223456666533333321  1     122  377778888876655421                      114


Q ss_pred             EEEEEEcCCCC-EEEEEe-cCCeEEEEECCCCCCcceeee
Q 004745          251 LTHVTFSPNGE-EVLLSY-SGEHVYLMDVNHAGGRAMRYT  288 (732)
Q Consensus       251 i~~l~~sp~g~-~l~~~~-~dg~v~iwd~~~~~~~~~~~~  288 (732)
                      +.+|+.+.+.+ +|++.+ .++.+.+||..+++.......
T Consensus       291 ~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  291 IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            77899998776 565554 479999999999876554443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.20  E-value=4.2  Score=41.51  Aligned_cols=116  Identities=8%  Similarity=-0.065  Sum_probs=61.8

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CC------------
Q 004745           22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DA------------   86 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg------------   86 (732)
                      .....++|+.+.++-......|+--|+.+.+....+ .-....+-...|..+.++..++-.-.   |.            
T Consensus        83 ~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~  161 (386)
T PF14583_consen   83 TFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF  161 (386)
T ss_dssp             TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred             ccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence            335667788887765555568888899988765444 44555565677765543455443211   11            


Q ss_pred             -------cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC---C-cEEEEECCCC
Q 004745           87 -------EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---G-TLRQHDFRQG  149 (732)
Q Consensus        87 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d---g-~i~vwd~~~~  149 (732)
                             .|.--|+.+++           ...+..-...+..+.|+|.++.+|+-|-+.   . .-|||-+++.
T Consensus       162 ~~a~p~~~i~~idl~tG~-----------~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d  224 (386)
T PF14583_consen  162 YEARPHCRIFTIDLKTGE-----------RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD  224 (386)
T ss_dssp             HHC---EEEEEEETTT-------------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred             HhhCCCceEEEEECCCCc-----------eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence                   12233343322           233444567788999999888888777542   2 1366766543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.16  E-value=0.066  Score=36.17  Aligned_cols=34  Identities=15%  Similarity=0.202  Sum_probs=29.9

Q ss_pred             cccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCC
Q 004745          638 EAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVP  672 (732)
Q Consensus       638 ~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~  672 (732)
                      ...|..++|+|...+||.+..||.|.|+.+ .++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457999999999999999999999999998 4443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.96  E-value=1.6  Score=45.52  Aligned_cols=126  Identities=14%  Similarity=0.124  Sum_probs=85.6

Q ss_pred             hhhccccEeeeccCCceeEEEEcCCCC--E-----EEEEeCCCcEEEEeCCCC-e-eEEEEccCC----CcCeEEEEEec
Q 004745            6 VRRLSQERELEGHQGCVNAISWNSKGS--L-----LISGSDDTHINVWSYSSR-K-LLHSIETGH----SANVFCTKFVP   72 (732)
Q Consensus         6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~--~-----lasg~~dg~i~vWd~~~~-~-~~~~~~~~h----~~~V~~~~~s~   72 (732)
                      +++++.+.+++-|.+ |+-+.+.|+.+  .     -+.|-.|+.|.-||++-. . .+... ++|    .....|.+-..
T Consensus       363 IE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~-q~kqy~~k~nFsc~aTT~  440 (644)
T KOG2395|consen  363 IERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV-QSKQYSTKNNFSCFATTE  440 (644)
T ss_pred             cccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee-eccccccccccceeeecC
Confidence            567788888888777 88888888653  2     234667889999998732 2 22212 333    24456666555


Q ss_pred             CCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004745           73 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  148 (732)
Q Consensus        73 ~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  148 (732)
                      +   .+|+.|+.+|.|++||--..          .....+.+...+|..|..+.+| ..|+ |..+..+.+-++.-
T Consensus       441 s---G~IvvgS~~GdIRLYdri~~----------~AKTAlPgLG~~I~hVdvtadG-Kwil-~Tc~tyLlLi~t~~  501 (644)
T KOG2395|consen  441 S---GYIVVGSLKGDIRLYDRIGR----------RAKTALPGLGDAIKHVDVTADG-KWIL-ATCKTYLLLIDTLI  501 (644)
T ss_pred             C---ceEEEeecCCcEEeehhhhh----------hhhhcccccCCceeeEEeeccC-cEEE-EecccEEEEEEEec
Confidence            5   59999999999999986321          1134567778899999999966 5553 33456888887654

>PHA02713 hypothetical protein; Provisional

Probab=94.95  E-value=1.1  Score=49.64  Aligned_cols=23  Identities=9%  Similarity=0.003  Sum_probs=18.2

Q ss_pred             CCCEEEEEecCC--eEEEEECCCCC
Q 004745          259 NGEEVLLSYSGE--HVYLMDVNHAG  281 (732)
Q Consensus       259 ~g~~l~~~~~dg--~v~iwd~~~~~  281 (732)
                      +|++.++|+.+|  .+..||..+.+
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeeecceeehhhcCccccc
Confidence            678888888887  78888887754

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.84  E-value=0.042  Score=61.32  Aligned_cols=71  Identities=20%  Similarity=0.399  Sum_probs=55.7

Q ss_pred             eeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeec---CCCCeEEEecCCCcEEEEcCCCCC
Q 004745          598 IKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCH---PFDCVVATSGIDNTIKIWTPSASV  671 (732)
Q Consensus       598 i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fs---p~~~~l~S~s~D~~i~vW~~~~~~  671 (732)
                      +.+++| +.||++++.|-.+|.|.+||..++++++.+.-|..+++++-++   .++..+.++..-|.  +|...=.+
T Consensus       133 Vtsvaf-n~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~nk  206 (1206)
T KOG2079|consen  133 VTSVAF-NQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVFNK  206 (1206)
T ss_pred             ceeeEe-cCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEEech
Confidence            445555 9999999999999999999999999999998877766665544   45567888887775  67654333

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.68  E-value=1.9  Score=47.69  Aligned_cols=149  Identities=14%  Similarity=0.132  Sum_probs=85.9

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC------CcEEEEEcCCCC
Q 004745           30 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRFS   97 (732)
Q Consensus        30 dg~~lasg~~d------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d------g~i~vwd~~~~~   97 (732)
                      .+.+++.||.+      ..+..+|..+++......-.+...-.+++...+   .+.++|+.|      .++..||..+.+
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~---~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG---KLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC---EEEEEccccCCCcccceEEEecCCCCc
Confidence            45677788776      368888988875544332234455567777765   788999988      346777877643


Q ss_pred             CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc-----EEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004745           98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-----LRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                      .        ..+..+...........+   ++.+.|.||.||.     +-.||..+.+-                     
T Consensus       361 W--------~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~W---------------------  408 (571)
T KOG4441|consen  361 W--------TPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNKW---------------------  408 (571)
T ss_pred             e--------eccCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCcc---------------------
Confidence            2        223333322222222222   5688889998863     66677666542                     


Q ss_pred             ccccccCCCCCccceEEEEecCCCCCEEEEEeCCC------eEEEEECCCCC
Q 004745          173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA------FARLYDRRMLP  218 (732)
Q Consensus       173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg------~v~iwd~~~~~  218 (732)
                        ..+............+.+   ++.+.++||.++      .+..||..+..
T Consensus       409 --~~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  409 --TPVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             --cccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence              112212112222223333   377888888553      46788887653

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.62  E-value=0.8  Score=47.56  Aligned_cols=147  Identities=14%  Similarity=0.176  Sum_probs=93.6

Q ss_pred             CCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-----EEEECCCcEEEEEcCCCCCCCCCC
Q 004745           30 KGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-----VSGAGDAEVRLFNLSRFSGRGLDD  103 (732)
Q Consensus        30 dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-----~s~~~dg~i~vwd~~~~~~~~~~~  103 (732)
                      +.++|+ ++.....++=-|++.|+.+... .-+.. |+-+.+.|+..+..+     +.|-.|..|+-||++-.....   
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k---  418 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK---  418 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce---
Confidence            444444 4555567888899999999988 44544 778888887433332     345668889999998532211   


Q ss_pred             CCCCCceeeccc----cCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004745          104 NAITPSALYQCH----TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  179 (732)
Q Consensus       104 ~~~~~~~~~~~h----~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (732)
                           +..-++|    .....|++-.  +..+|+.||.+|.||+||- .+...                        -..
T Consensus       419 -----l~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~A------------------------KTA  466 (644)
T KOG2395|consen  419 -----LAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRA------------------------KTA  466 (644)
T ss_pred             -----eeeeeccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhh------------------------hhc
Confidence                 2222222    2234455444  4468999999999999996 33211                        122


Q ss_pred             CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004745          180 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  215 (732)
Q Consensus       180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~  215 (732)
                      .|+-..+|..+..+.+ |++|++.+ +..+.+.+..
T Consensus       467 lPgLG~~I~hVdvtad-GKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  467 LPGLGDAIKHVDVTAD-GKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ccccCCceeeEEeecc-CcEEEEec-ccEEEEEEEe
Confidence            3444558889999988 66665544 6678888764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.57  E-value=5.4  Score=39.60  Aligned_cols=159  Identities=15%  Similarity=0.145  Sum_probs=85.9

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCC
Q 004745           29 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP  108 (732)
Q Consensus        29 ~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  108 (732)
                      ..++.|+.|..+| +.+++.........+  .+...|..+...|+-  +.|+.-+ |+.+.++++..............+
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~~~--~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLPEL--NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEeccc--CEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            3578899998888 999998433333333  233349999999984  4554443 699999999864332210000000


Q ss_pred             ----ceeeccccCceeEEE--EecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCC
Q 004745          109 ----SALYQCHTRRVKKLA--VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  182 (732)
Q Consensus       109 ----~~~~~~h~~~v~~l~--~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (732)
                          ..........+..++  -.+.+...|+ ......|.+|..........         ..        .+.+.    
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~---------~~--------~ke~~----  136 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFS---------KL--------LKEIS----  136 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCccccc---------ce--------eEEEE----
Confidence                000111223344444  1122334444 44456899888776421100         00        00111    


Q ss_pred             CccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004745          183 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  219 (732)
Q Consensus       183 ~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~  219 (732)
                      -...+.++.|.+   +.++.|..+ ...+.|+.++..
T Consensus       137 lp~~~~~i~~~~---~~i~v~~~~-~f~~idl~~~~~  169 (275)
T PF00780_consen  137 LPDPPSSIAFLG---NKICVGTSK-GFYLIDLNTGSP  169 (275)
T ss_pred             cCCCcEEEEEeC---CEEEEEeCC-ceEEEecCCCCc
Confidence            113678888884   367777654 477888886543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.50  E-value=3  Score=40.05  Aligned_cols=61  Identities=11%  Similarity=0.238  Sum_probs=44.1

Q ss_pred             EEcCCCCEEEEEeC-----CCcEEEEeCCCC-eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004745           26 SWNSKGSLLISGSD-----DTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF   91 (732)
Q Consensus        26 ~~s~dg~~lasg~~-----dg~i~vWd~~~~-~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw   91 (732)
                      .|||||.+|...-.     .|.|-|||...+ +.+.++ ..|.-.-..+.+.++  |..++.+  +|-|...
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~D--Grtlvva--nGGIeth  186 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMAD--GRTLVVA--NGGIETH  186 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEecC--CcEEEEe--CCceecc
Confidence            48999998887633     377999998754 456667 677777788999999  5777765  3444444

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.45  E-value=7.5  Score=40.75  Aligned_cols=205  Identities=12%  Similarity=0.144  Sum_probs=117.4

Q ss_pred             ceeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004745           21 CVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR   99 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~-~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~   99 (732)
                      ....+...+++..+.... ....+.+-+.......... ..-...-..+..++.+ .+.++....++.|.+.|..+... 
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~-~~g~~~p~~i~v~~~~-~~vyv~~~~~~~v~vid~~~~~~-  108 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSL-SVGGVYPAGVAVNPAG-NKVYVTTGDSNTVSVIDTATNTV-  108 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeec-cCCCccccceeeCCCC-CeEEEecCCCCeEEEEcCcccce-
Confidence            455677888885444332 2235555555522222212 1111334577788874 24566666679999999665321 


Q ss_pred             CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe--CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004745          100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  177 (732)
Q Consensus       100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (732)
                               ..... -......++++|++....++-.  .++.+.+.|..+.+...             . .        
T Consensus       109 ---------~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~-------------~-~--------  156 (381)
T COG3391         109 ---------LGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA-------------T-I--------  156 (381)
T ss_pred             ---------eeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE-------------E-E--------
Confidence                     12211 1225678999997756555555  36788888877765320             0 1        


Q ss_pred             cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004745          178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  257 (732)
Q Consensus       178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  257 (732)
                        +.+. .+ ..++++|++...+++-..++.|.+.|........ - ..            ...  ..... ....+.++
T Consensus       157 --~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~-~~------------~~~--~~~~~-~P~~i~v~  215 (381)
T COG3391         157 --PVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G-SV------------GSL--VGVGT-GPAGIAVD  215 (381)
T ss_pred             --ecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c-cc------------ccc--cccCC-CCceEEEC
Confidence              1111 12 7889999944355555578999999977654331 0 00            000  00011 24568999


Q ss_pred             CCCCEEEEEecC---CeEEEEECCCCC
Q 004745          258 PNGEEVLLSYSG---EHVYLMDVNHAG  281 (732)
Q Consensus       258 p~g~~l~~~~~d---g~v~iwd~~~~~  281 (732)
                      |+|+++++....   +.+...|..+..
T Consensus       216 ~~g~~~yV~~~~~~~~~v~~id~~~~~  242 (381)
T COG3391         216 PDGNRVYVANDGSGSNNVLKIDTATGN  242 (381)
T ss_pred             CCCCEEEEEeccCCCceEEEEeCCCce
Confidence            999987777664   588888888743

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.45  E-value=0.074  Score=58.47  Aligned_cols=105  Identities=9%  Similarity=-0.073  Sum_probs=63.3

Q ss_pred             CCccccccCCCCCCCCCCCC------CCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCC------
Q 004745          550 DSARETVDANGSSGSPSSSS------QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDD------  617 (732)
Q Consensus       550 ~~v~~~~~s~d~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~D------  617 (732)
                      ..+.+.++||||+.+|....      +....+|-..........+.|..  .+.-.    |||||++|++.+..      
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~--~t~Ps----WspDG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHS--LTRPS----WSLDADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCC--CCCce----ECCCCCceEEEecCcceEEE
Confidence            35678999999999887641      33345564332222333334432  33344    79999988877532      


Q ss_pred             ------CcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEE
Q 004745          618 ------GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKI  664 (732)
Q Consensus       618 ------g~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~v  664 (732)
                            +.+.+.++..++..+   ...+.|..+.|||||..||-.. ++.|.|
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence                  223333554444433   2356799999999999666554 466655

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.43  E-value=3.3  Score=42.76  Aligned_cols=71  Identities=15%  Similarity=0.059  Sum_probs=35.0

Q ss_pred             cEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCcceee---ecCCCCceeeeccC--CCCccCCCCCCccCCCccccc
Q 004745          250 HLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRY---TVGDASKIMSFTPT--LNGLELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       250 ~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~  322 (732)
                      -|+.+.+|.|.++|+.++- .|.|+.||+..+..+....   ..+...+.  -.|.  .+.+...++-+..|.||+.+.
T Consensus       313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~--~~~~v~g~~l~GgPqMvqlS~DGkRlY  389 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKG--DHPVVKGKRLRGGPQMVQLSLDGKRLY  389 (461)
T ss_dssp             ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B----TTS------S----EEE-TTSSEEE
T ss_pred             ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccC--CCccccccccCCCCCeEEEccCCeEEE
Confidence            3899999999999988877 8999999999977655432   11211111  1122  223444556677788888776

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.29  E-value=5.3  Score=38.41  Aligned_cols=225  Identities=12%  Similarity=0.120  Sum_probs=121.7

Q ss_pred             eEEEEcCCC-CEEEEEeCCCc-EEEEeCCCCeeEEEEccCCCcC--eEEEEEecCCCCCEEEEEEC-----CCcEEEEEc
Q 004745           23 NAISWNSKG-SLLISGSDDTH-INVWSYSSRKLLHSIETGHSAN--VFCTKFVPETSDELVVSGAG-----DAEVRLFNL   93 (732)
Q Consensus        23 ~~l~~s~dg-~~lasg~~dg~-i~vWd~~~~~~~~~~~~~h~~~--V~~~~~s~~~~g~~l~s~~~-----dg~i~vwd~   93 (732)
                      ..|+|+|.- +-++.+-.-|+ ..++|..+.+.+..+ ...++.  --.-.|||+  |.+|+..-.     -|.|-|||.
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~-~s~~~RHfyGHGvfs~d--G~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL-VSQEGRHFYGHGVFSPD--GRLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE-ecccCceeecccccCCC--CcEEEeecCCCCCCCceEEEEec
Confidence            356777743 44555555554 468888877766655 222211  122468999  577776533     367999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEE-ECCCCCCCCCCCCCCcccceEEeeccCC
Q 004745           94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH-DFRQGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                      +..-         ..+..+..|.-....+.+.+|+ +.++.+.  |-|..- |....+.    .....+....+++-.++
T Consensus       148 r~~f---------qrvgE~~t~GiGpHev~lm~DG-rtlvvan--GGIethpdfgR~~l----NldsMePSlvlld~atG  211 (366)
T COG3490         148 REGF---------QRVGEFSTHGIGPHEVTLMADG-RTLVVAN--GGIETHPDFGRTEL----NLDSMEPSLVLLDAATG  211 (366)
T ss_pred             cccc---------ceecccccCCcCcceeEEecCC-cEEEEeC--CceecccccCcccc----chhhcCccEEEEecccc
Confidence            8532         2256777788788889999966 6665543  556655 3322221    11223344556665666


Q ss_pred             ccccccCCC--CCccceEEEEecCCCCCEEEEEeCCCe-----EEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004745          173 AKRSLADPP--KQTLSLKSCDISSTRPHLLLVGGSDAF-----ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  245 (732)
Q Consensus       173 ~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~tg~~dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (732)
                      ........+  .+.-.+..++..++ +..++.+-..|.     --+=-...++++.-+..+..           ..  ..
T Consensus       212 ~liekh~Lp~~l~~lSiRHld~g~d-gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee-----------~~--~~  277 (366)
T COG3490         212 NLIEKHTLPASLRQLSIRHLDIGRD-GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEE-----------QT--AA  277 (366)
T ss_pred             chhhhccCchhhhhcceeeeeeCCC-CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHH-----------HH--HH
Confidence            655555555  45567788888887 443333322111     00111111222211110000           00  00


Q ss_pred             CccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCC
Q 004745          246 RSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG  281 (732)
Q Consensus       246 ~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~  281 (732)
                      -.+ .|-+++.+.+..+++..+- .+...+||..++.
T Consensus       278 ~an-YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~  313 (366)
T COG3490         278 FAN-YIGSIAANRRDGLVALTSPRGNRAVIWDAATGA  313 (366)
T ss_pred             HHh-hhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence            011 3667888765555555554 5577899999965

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.11  E-value=2.8  Score=39.61  Aligned_cols=103  Identities=17%  Similarity=0.190  Sum_probs=73.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce
Q 004745           31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  110 (732)
Q Consensus        31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  110 (732)
                      ..+++.|+..+.+.--|..+|+.+.+.  --..+|.+-+..-   |++++.|+..|.+.+-+.++++.          ..
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~--ilg~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs~----------~w   87 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEA--ILGVRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGSQ----------IW   87 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeeh--hhCceeeeeeEEE---CCEEEEEEccCcEEEEEecchhh----------ee
Confidence            357888999999999999999887664  2345565555553   47899999999999999998632          23


Q ss_pred             eeccccCceeE-EEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004745          111 LYQCHTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQGS  150 (732)
Q Consensus       111 ~~~~h~~~v~~-l~~~p~~~~~l~s~s~dg~i~vwd~~~~~  150 (732)
                      .+... +.|.+ ....+ ++.++..++.|+..+.-|.++..
T Consensus        88 ~f~~~-~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~  126 (354)
T KOG4649|consen   88 NFVIL-ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYG  126 (354)
T ss_pred             eeeeh-hhhccceEEcC-CCceEEEecCCCcEEEecccccc
Confidence            33221 12222 23344 44899999999999999998865

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.98  E-value=5.7  Score=38.36  Aligned_cols=211  Identities=9%  Similarity=0.009  Sum_probs=107.8

Q ss_pred             cccEeeeccCC--ceeEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745           10 SQERELEGHQG--CVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus        10 ~~~~~l~~h~~--~V~~l~~s~dg~~lasg~~dg--~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      +.++++. |..  -...+.|..+|.++-+.+.-|  .|+.+|+.+++.+....-...--=..+....+   .+..-.=.+
T Consensus        34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d---~l~qLTWk~  109 (264)
T PF05096_consen   34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD---KLYQLTWKE  109 (264)
T ss_dssp             EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT---EEEEEESSS
T ss_pred             EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC---EEEEEEecC
Confidence            4445543 332  234577877888888887655  79999999998876653233322345666654   555555678


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      +...+||..+.+          .+..+. ....=..++.  ++..++.|=+ ...|+++|..+.+...           .
T Consensus       110 ~~~f~yd~~tl~----------~~~~~~-y~~EGWGLt~--dg~~Li~SDG-S~~L~~~dP~~f~~~~-----------~  164 (264)
T PF05096_consen  110 GTGFVYDPNTLK----------KIGTFP-YPGEGWGLTS--DGKRLIMSDG-SSRLYFLDPETFKEVR-----------T  164 (264)
T ss_dssp             SEEEEEETTTTE----------EEEEEE--SSS--EEEE--CSSCEEEE-S-SSEEEEE-TTT-SEEE-----------E
T ss_pred             CeEEEEccccce----------EEEEEe-cCCcceEEEc--CCCEEEEECC-ccceEEECCcccceEE-----------E
Confidence            999999998642          234433 2334456663  3545555544 4579999987665220           0


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccc-ccc-c
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM-HLS-E  243 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~  243 (732)
                      +--...+         .....++-+.+- + |...|=.-....|...|..+++....+...        .+.+. ... .
T Consensus       165 i~V~~~g---------~pv~~LNELE~i-~-G~IyANVW~td~I~~Idp~tG~V~~~iDls--------~L~~~~~~~~~  225 (264)
T PF05096_consen  165 IQVTDNG---------RPVSNLNELEYI-N-GKIYANVWQTDRIVRIDPETGKVVGWIDLS--------GLRPEVGRDKS  225 (264)
T ss_dssp             EE-EETT---------EE---EEEEEEE-T-TEEEEEETTSSEEEEEETTT-BEEEEEE-H--------HHHHHHTSTTS
T ss_pred             EEEEECC---------EECCCcEeEEEE-c-CEEEEEeCCCCeEEEEeCCCCeEEEEEEhh--------Hhhhccccccc
Confidence            0000000         011134445554 2 555555555666777777777543322110        00000 000 0


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEec
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSYS  268 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~~  268 (732)
                      ......-.+.+|+.|..+.|+..+.
T Consensus       226 ~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  226 RQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             T--TTS-EEEEEEETTTTEEEEEET
T ss_pred             ccccCCeeEeEeEeCCCCEEEEEeC
Confidence            0001224899999998776666554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.95  E-value=3.9  Score=45.25  Aligned_cols=148  Identities=18%  Similarity=0.191  Sum_probs=79.5

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeeEEEEccCCCcC-eEEEEEecCCCCCEEEEEECCCc-----EEEEEcCCCC
Q 004745           30 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGDAE-----VRLFNLSRFS   97 (732)
Q Consensus        30 dg~~lasg~~d------g~i~vWd~~~~~~~~~~~~~h~~~-V~~~~~s~~~~g~~l~s~~~dg~-----i~vwd~~~~~   97 (732)
                      ++...++||.|      .++..||..+.+....- .-.... =.+++...   |.+.+.|+.||.     |-.||..+.+
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a-~M~~~R~~~~v~~l~---g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA-PMNTKRSDFGVAVLD---GKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccC-CccCccccceeEEEC---CEEEEEeccccccccccEEEecCCCCc
Confidence            45778888888      35778888877644311 111111 11222222   478889998865     6778877543


Q ss_pred             CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC------cEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG------TLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      -        ..+..+..   .........-++.+.+.||.++      ++..||..+..-                    
T Consensus       408 W--------~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W--------------------  456 (571)
T KOG4441|consen  408 W--------TPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW--------------------  456 (571)
T ss_pred             c--------cccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce--------------------
Confidence            2        22333322   2222222222568888888654      456777766542                    


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCe-----EEEEECCCCC
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-----ARLYDRRMLP  218 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~-----v~iwd~~~~~  218 (732)
                         ..+..............++   +.+.+.||.|+.     |..||..+.+
T Consensus       457 ---~~~~~M~~~R~~~g~a~~~---~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  457 ---TLIAPMNTRRSGFGVAVLN---GKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             ---eecCCcccccccceEEEEC---CEEEEECCccCCCccceEEEEcCCCCc
Confidence               1122221122122222232   668888887763     7778887654

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.74  E-value=5.6  Score=44.07  Aligned_cols=112  Identities=13%  Similarity=0.102  Sum_probs=58.6

Q ss_pred             CceeEEEEcCCCCEEEEEe------CCC--cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-CcEEE
Q 004745           20 GCVNAISWNSKGSLLISGS------DDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRL   90 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~------~dg--~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-g~i~v   90 (732)
                      ..+...+++|||+.+|..-      .|+  .|.+++.. +.. ..+..+.  ..+.-.|+|+  |..|.+.... ..+++
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~--~~t~PsWspD--G~~lw~v~dg~~~~~v  423 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH--SLTRPSWSLD--ADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC--CCCCceECCC--CCceEEEecCcceEEE
Confidence            4677889999999887654      244  44555542 222 3332333  3788999999  4666665432 12222


Q ss_pred             EEcCCCCCCCC--CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEE
Q 004745           91 FNLSRFSGRGL--DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ  143 (732)
Q Consensus        91 wd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~v  143 (732)
                      .+-.. .++..  ...... ...  .....|..+.|+|++.++++. . ++.|.+
T Consensus       424 ~~~~~-~gql~~~~vd~ge-~~~--~~~g~Issl~wSpDG~RiA~i-~-~g~v~V  472 (591)
T PRK13616        424 IRDPA-TGQLARTPVDASA-VAS--RVPGPISELQLSRDGVRAAMI-I-GGKVYL  472 (591)
T ss_pred             eccCC-CceEEEEeccCch-hhh--ccCCCcCeEEECCCCCEEEEE-E-CCEEEE
Confidence            22111 00000  000000 111  234579999999977444443 3 466766

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.65  E-value=5.3  Score=43.49  Aligned_cols=64  Identities=9%  Similarity=0.066  Sum_probs=42.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC-----cCeE--EEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004745           31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHS-----ANVF--CTKFVPETSDELVVSGAGDAEVRLFNLSRFS   97 (732)
Q Consensus        31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~-----~~V~--~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~   97 (732)
                      +..+..++.++.|.-.|..+|+.+.++.....     ..+.  .+....   +..++.++.++.|.-+|.++++
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~---~~~V~v~~~~g~v~AlD~~TG~  131 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWD---PRKVFFGTFDGRLVALDAETGK  131 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEcc---CCeEEEecCCCeEEEEECCCCC
Confidence            44566777889999999999998877632221     0010  111111   1577788889999999998754

The alignment model contains an 8-bladed beta-propeller.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.09  E-value=3.9  Score=43.46  Aligned_cols=147  Identities=12%  Similarity=0.108  Sum_probs=78.6

Q ss_pred             EeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE-
Q 004745           13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF-   91 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw-   91 (732)
                      +.+-...-....+.++|+|++++.++ ||.-.|+.....+...      .+.-....|.+.   +.+++-...++|.|+ 
T Consensus        26 k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~------~G~g~~~vw~~~---n~yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   26 KELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA------FGSGLSFVWSSR---NRYAVLESSSTIKIYK   95 (443)
T ss_dssp             EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE------EEE-SEEEE-TS---SEEEEE-TTS-EEEEE
T ss_pred             ccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc------cCceeEEEEecC---ccEEEEECCCeEEEEE
Confidence            33434455688999999999999854 6788888744433322      133456788885   467777778999996 


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      ++....           ...+.- ...+..|-.    +.+|...+.+ .|.+||+.+++.+              .    
T Consensus        96 n~~~~~-----------~k~i~~-~~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i--------------~----  140 (443)
T PF04053_consen   96 NFKNEV-----------VKSIKL-PFSVEKIFG----GNLLGVKSSD-FICFYDWETGKLI--------------R----  140 (443)
T ss_dssp             TTEE-T-----------T------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EE--------------E----
T ss_pred             cCcccc-----------ceEEcC-CcccceEEc----CcEEEEECCC-CEEEEEhhHccee--------------e----
Confidence            443211           112221 123444432    4666665554 8999999988632              1    


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  215 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~  215 (732)
                          .+     ....|..+.|+++ +.+++..+.+ .+.|++..
T Consensus       141 ----~i-----~v~~vk~V~Ws~~-g~~val~t~~-~i~il~~~  173 (443)
T PF04053_consen  141 ----RI-----DVSAVKYVIWSDD-GELVALVTKD-SIYILKYN  173 (443)
T ss_dssp             ----EE-----SS-E-EEEEE-TT-SSEEEEE-S--SEEEEEE-
T ss_pred             ----EE-----ecCCCcEEEEECC-CCEEEEEeCC-eEEEEEec
Confidence                11     0114789999998 7788887755 67787654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.09  E-value=0.98  Score=45.95  Aligned_cols=219  Identities=13%  Similarity=0.175  Sum_probs=96.0

Q ss_pred             EEcCCCCEEEEEe-CCC--cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCC
Q 004745           26 SWNSKGSLLISGS-DDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  102 (732)
Q Consensus        26 ~~s~dg~~lasg~-~dg--~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~  102 (732)
                      +|.+||++|+-++ .||  .+.+-|+.+++..+.. .+-........++|+.  +.++-......|+--|+++.+..   
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g~~~~g~~~s~~~--~~~~Yv~~~~~l~~vdL~T~e~~---  115 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPGDNTFGGFLSPDD--RALYYVKNGRSLRRVDLDTLEER---  115 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTS--SEEEEEETTTEEEEEETTT--EE---
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCCCCccceEEecCC--CeEEEEECCCeEEEEECCcCcEE---
Confidence            5678997666554 454  5666688888877655 3332334456677874  67666666678888888875321   


Q ss_pred             CCCCCCceeeccccCceeEEEEecC-CCcEEEEEeCCCcEEEEECCCC-CCCCCCCCCCcccceEEeeccCCccccccCC
Q 004745          103 DNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQG-SSCPPAGSSHQECRNILLDLRCGAKRSLADP  180 (732)
Q Consensus       103 ~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (732)
                             ..+.-....+-...|..+ +...++-.-....  -|...+. +...........+..+.+++.+|....+...
T Consensus       116 -------~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~--d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~  186 (386)
T PF14583_consen  116 -------VVYEVPDDWKGYGTWVANSDCTKLVGIEISRE--DWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED  186 (386)
T ss_dssp             -------EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG--G-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE
T ss_pred             -------EEEECCcccccccceeeCCCccEEEEEEEeeh--hccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec
Confidence                   222222344434455422 3344332211000  0000000 0000111223445566677777765555432


Q ss_pred             CCCccceEEEEecCCCCCEEEEEeC---CCe-EEEEECCCCC-CCcccccCCCCCCccccccccccccCCCccccEEEEE
Q 004745          181 PKQTLSLKSCDISSTRPHLLLVGGS---DAF-ARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  255 (732)
Q Consensus       181 ~~~~~~v~~i~~~~~~~~~l~tg~~---dg~-v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  255 (732)
                         ...+..+.|+|.++.+|+-|-.   +.. -|||-+++.. ....+..                  . .....+..=-
T Consensus       187 ---~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~------------------~-~~~e~~gHEf  244 (386)
T PF14583_consen  187 ---TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR------------------R-MEGESVGHEF  244 (386)
T ss_dssp             ---SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----------------------TTEEEEEEE
T ss_pred             ---CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec------------------C-CCCccccccc
Confidence               3367788999987777777643   231 3677665322 1111100                  1 1122355667


Q ss_pred             EcCCCCEEEEEec-----CCeEEEEECCCCC
Q 004745          256 FSPNGEEVLLSYS-----GEHVYLMDVNHAG  281 (732)
Q Consensus       256 ~sp~g~~l~~~~~-----dg~v~iwd~~~~~  281 (732)
                      |.|+|..|.--+.     +..|.-+|+.+++
T Consensus       245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             E-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred             ccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence            8899876654322     3356666776643

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=92.89  E-value=14  Score=40.34  Aligned_cols=51  Identities=14%  Similarity=0.187  Sum_probs=33.6

Q ss_pred             CCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEE-EEeecCCCC-eEEEec
Q 004745          607 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVN-CVQCHPFDC-VVATSG  657 (732)
Q Consensus       607 dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~-~v~fsp~~~-~l~S~s  657 (732)
                      .+.+|+.|+.||.++.+|.+||+.+.+++-...... =+.|..+|+ |+++.+
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~~  457 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVMV  457 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEEe
Confidence            457788888999999999999999988775222211 222444565 444443

The alignment model contains an 8-bladed beta-propeller.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.58  E-value=3.8  Score=45.05  Aligned_cols=122  Identities=14%  Similarity=0.111  Sum_probs=75.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCC
Q 004745           21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  100 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~  100 (732)
                      ..+-+.-|.-++..++-+...++.|||...+.....-.-...+.|.++.|....+|+.+++.+..+.|.++.-...+...
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            34444444444444444445679999999887555442245789999999876667999999999999999653211100


Q ss_pred             CCCCCCCCceee--cccc-CceeEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004745          101 LDDNAITPSALY--QCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDF  146 (732)
Q Consensus       101 ~~~~~~~~~~~~--~~h~-~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~  146 (732)
                       ..+.+.++..+  ..|+ .+|.+..|.+++ .+++ |+ ++.+.|+|-
T Consensus       111 -~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV-~s-GNqlfv~dk  155 (631)
T PF12234_consen  111 -KGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVV-GS-GNQLFVFDK  155 (631)
T ss_pred             -CCcccceeEEEEeecCCCCCccceeEecCC-eEEE-Ee-CCEEEEECC
Confidence             01112233322  3344 678999999854 4443 33 357888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.45  E-value=9.3  Score=35.68  Aligned_cols=131  Identities=15%  Similarity=0.094  Sum_probs=78.6

Q ss_pred             CcCeEEEEEecCCCCCEEEEEECC---------CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004745           62 SANVFCTKFVPETSDELVVSGAGD---------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  132 (732)
Q Consensus        62 ~~~V~~~~~s~~~~g~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  132 (732)
                      ..+.+.-..+|+  |++++-.-.|         |.++.|-...            .+......-.--+.++|..+...+.
T Consensus       108 knR~NDgkvdP~--Gryy~GtMad~~~~le~~~g~Ly~~~~~h------------~v~~i~~~v~IsNgl~Wd~d~K~fY  173 (310)
T KOG4499|consen  108 KNRLNDGKVDPD--GRYYGGTMADFGDDLEPIGGELYSWLAGH------------QVELIWNCVGISNGLAWDSDAKKFY  173 (310)
T ss_pred             hcccccCccCCC--CceeeeeeccccccccccccEEEEeccCC------------CceeeehhccCCccccccccCcEEE
Confidence            455677778888  4664332222         3455554431            1223333334457788987654555


Q ss_pred             EEEeCCCcEEEEE--CCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004745          133 WSASEDGTLRQHD--FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  210 (732)
Q Consensus       133 ~s~s~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~  210 (732)
                      ++-+.+-.|.-||  ..++..         ..+..+++++......-..+       -.++...+ |++.++.-..++|.
T Consensus       174 ~iDsln~~V~a~dyd~~tG~~---------snr~~i~dlrk~~~~e~~~P-------DGm~ID~e-G~L~Va~~ng~~V~  236 (310)
T KOG4499|consen  174 YIDSLNYEVDAYDYDCPTGDL---------SNRKVIFDLRKSQPFESLEP-------DGMTIDTE-GNLYVATFNGGTVQ  236 (310)
T ss_pred             EEccCceEEeeeecCCCcccc---------cCcceeEEeccCCCcCCCCC-------CcceEccC-CcEEEEEecCcEEE
Confidence            5667777787788  555542         33456677665432211112       22334555 88999999999999


Q ss_pred             EEECCCCCCCccc
Q 004745          211 LYDRRMLPPLTSC  223 (732)
Q Consensus       211 iwd~~~~~~~~~~  223 (732)
                      ..|+.+++.+..+
T Consensus       237 ~~dp~tGK~L~ei  249 (310)
T KOG4499|consen  237 KVDPTTGKILLEI  249 (310)
T ss_pred             EECCCCCcEEEEE
Confidence            9999999877665

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.40  E-value=13  Score=37.31  Aligned_cols=170  Identities=9%  Similarity=0.037  Sum_probs=88.9

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEcc---CC-CcCeEEEEEecCCCCCEEEEEEC---------CCc
Q 004745           21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET---GH-SANVFCTKFVPETSDELVVSGAG---------DAE   87 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~---~h-~~~V~~~~~s~~~~g~~l~s~~~---------dg~   87 (732)
                      .+.++..-.++..|+++.  .-+.+++.+++..+..+..   +. ....+.+...|+  |.+.++...         ...
T Consensus        67 ~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd--G~~wfgt~~~~~~~~~~~~~~  142 (307)
T COG3386          67 GFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD--GRIWFGDMGYFDLGKSEERPT  142 (307)
T ss_pred             CcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC--CCEEEeCCCccccCccccCCc
Confidence            334433333444555443  2377788766655322211   11 245577888888  465555433         011


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      =.||.+.-. +        ..+..+..+-..-+.|+|+|++..++++=+..+.|.-|++......       .......+
T Consensus       143 G~lyr~~p~-g--------~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~-------~~~~~~~~  206 (307)
T COG3386         143 GSLYRVDPD-G--------GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGP-------IGGRRGFV  206 (307)
T ss_pred             ceEEEEcCC-C--------CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCc-------cCCcceEE
Confidence            134444311 1        1134445556667899999977555555566678888887641100       00001111


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC-eEEEEECCCCCCCccc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSC  223 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg-~v~iwd~~~~~~~~~~  223 (732)
                                 ......+..-.++...+ |++.+++..+| .|.+|+.. ++.+..+
T Consensus       207 -----------~~~~~~G~PDG~~vDad-G~lw~~a~~~g~~v~~~~pd-G~l~~~i  250 (307)
T COG3386         207 -----------DFDEEPGLPDGMAVDAD-GNLWVAAVWGGGRVVRFNPD-GKLLGEI  250 (307)
T ss_pred             -----------EccCCCCCCCceEEeCC-CCEEEecccCCceEEEECCC-CcEEEEE
Confidence                       11112234456677777 66665555554 89999998 7666554

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=92.35  E-value=25  Score=40.58  Aligned_cols=236  Identities=12%  Similarity=0.103  Sum_probs=115.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeEEEEc-------cCCCcCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCC--CC
Q 004745           33 LLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSG--RG  100 (732)
Q Consensus        33 ~lasg~~dg~i~vWd~~~~~~~~~~~-------~~h~~~V~~~~~s~~~~g~~l~s~~~d---g~i~vwd~~~~~~--~~  100 (732)
                      -++.-...|.+++|=.+......+..       ..-...|+..++.+..+|+.++.++.+   +.|++|.+.-.=+  ++
T Consensus        64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~  143 (753)
T PF11635_consen   64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ  143 (753)
T ss_pred             EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence            35555678999999763222222210       124456777777743335555555554   7888886543211  11


Q ss_pred             -CCCCCCCCceeec---------------------cccCceeEEEEec------CCCcEEEEEeC----CCcEEEEECCC
Q 004745          101 -LDDNAITPSALYQ---------------------CHTRRVKKLAVEV------GNPHVVWSASE----DGTLRQHDFRQ  148 (732)
Q Consensus       101 -~~~~~~~~~~~~~---------------------~h~~~v~~l~~~p------~~~~~l~s~s~----dg~i~vwd~~~  148 (732)
                       ... ...|...+.                     .....++.+.|-+      ..+.++++.+.    ...|.-|.++.
T Consensus       144 ~~d~-q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~  222 (753)
T PF11635_consen  144 QIDP-QKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE  222 (753)
T ss_pred             cCCC-CcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence             001 000111000                     0123566777765      23345555442    34688999887


Q ss_pred             CCCCCC-CCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCC
Q 004745          149 GSSCPP-AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM  227 (732)
Q Consensus       149 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~  227 (732)
                      ...... .+..-...........................|.++..... +..++....||+|.++|..+.+.+.......
T Consensus       223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~  301 (753)
T PF11635_consen  223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNG  301 (753)
T ss_pred             cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhccccccc
Confidence            653211 10000000000000000000000111112336777777666 6689999999999999999987765541111


Q ss_pred             CCCCcccc-ccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEE
Q 004745          228 SPPPCVNY-FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY  273 (732)
Q Consensus       228 ~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~  273 (732)
                      ..+..+.. +......+  ... ++..++|||++--++.-..+|.+.
T Consensus       302 ~~~~~v~s~~~~Gf~fp--~~~-~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  302 EPPNTVTSLFQAGFHFP--CIQ-PPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             CCccccccccccccccc--cCC-CCceEEECcccceEEEEecCCCce
Confidence            11111111 11111111  011 355689999999889888898866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PHA03098 kelch-like protein; Provisional

Probab=92.19  E-value=11  Score=41.60  Aligned_cols=63  Identities=6%  Similarity=0.017  Sum_probs=33.2

Q ss_pred             CCCEEEEEeCCC------cEEEEeCCCCeeEEEEccCC-CcCeEEEEEecCCCCCEEEEEECC-----CcEEEEEcCCC
Q 004745           30 KGSLLISGSDDT------HINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRF   96 (732)
Q Consensus        30 dg~~lasg~~dg------~i~vWd~~~~~~~~~~~~~h-~~~V~~~~~s~~~~g~~l~s~~~d-----g~i~vwd~~~~   96 (732)
                      ++..++.||.++      .+..||..+.+....- .-. ...-.++... +  +.+++.|+.+     ..+..||+.+.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~R~~~~~~~~-~--~~lyv~GG~~~~~~~~~v~~yd~~~~  368 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP-ELIYPRKNPGVTVF-N--NRIYVIGGIYNSISLNTVESWKPGES  368 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECC-CCCcccccceEEEE-C--CEEEEEeCCCCCEecceEEEEcCCCC
Confidence            455666776542      5778888777653221 111 1111122222 3  3677777765     34677887754

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.16  E-value=18  Score=41.01  Aligned_cols=28  Identities=32%  Similarity=0.205  Sum_probs=20.8

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEe
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWS   47 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd   47 (732)
                      .-.|..+.+||+|++||..|..| |.|-.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~  111 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLE  111 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEE
Confidence            45788889999999999888755 44443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02713 hypothetical protein; Provisional

Probab=92.14  E-value=2.4  Score=46.84  Aligned_cols=22  Identities=0%  Similarity=0.155  Sum_probs=17.3

Q ss_pred             CCEEEEEeCCC--eEEEEECCCCC
Q 004745          197 PHLLLVGGSDA--FARLYDRRMLP  218 (732)
Q Consensus       197 ~~~l~tg~~dg--~v~iwd~~~~~  218 (732)
                      +++.++|+.++  .+..||+.+.+
T Consensus       513 ~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        513 NTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CEEEEEeeecceeehhhcCccccc
Confidence            67899999888  67778877653

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.10  E-value=14  Score=36.93  Aligned_cols=160  Identities=16%  Similarity=0.153  Sum_probs=75.5

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      +-...+..+..++||+++++++.-....-||.....-...- ..-...|..|.|.|+  +.+.+ ....|.|+.=+....
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~--~~lw~-~~~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPD--GNLWM-LARGGQIQFSDDPDD  217 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TT--S-EEE-EETTTEEEEEE-TTE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCC--CCEEE-EeCCcEEEEccCCCC
Confidence            34467888899999999998876555568875543222222 345688999999999  35545 448888888772210


Q ss_pred             CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004745           97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  176 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (732)
                       ....    .+++.....-.-.+..++|.+++ .+.++|+ .|.+ +.....++.-                      ..
T Consensus       218 -~~~w----~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S~DgGktW----------------------~~  267 (302)
T PF14870_consen  218 -GETW----SEPIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVSTDGGKTW----------------------QK  267 (302)
T ss_dssp             -EEEE-------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-----------------------EE
T ss_pred             -cccc----ccccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EEeCCCCccc----------------------eE
Confidence             0000    00111111223447889999843 5665554 4555 4444454421                      00


Q ss_pred             ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004745          177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  212 (732)
Q Consensus       177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw  212 (732)
                      ......-...++.+.|.+. .+-++ -+.+|.|--|
T Consensus       268 ~~~~~~~~~n~~~i~f~~~-~~gf~-lG~~G~ll~~  301 (302)
T PF14870_consen  268 DRVGENVPSNLYRIVFVNP-DKGFV-LGQDGVLLRY  301 (302)
T ss_dssp             -GGGTTSSS---EEEEEET-TEEEE-E-STTEEEEE
T ss_pred             CccccCCCCceEEEEEcCC-CceEE-ECCCcEEEEe
Confidence            0011112335778888764 33444 4567776544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.95  E-value=0.6  Score=44.29  Aligned_cols=65  Identities=12%  Similarity=0.258  Sum_probs=51.7

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEEE-------e-------cCcccEEEEeecCCCCeEEEecCCCcEEEEcCCC
Q 004745          604 LGQRGDYIASGSDDGRWFIWEKQTGRLIKML-------L-------GDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA  669 (732)
Q Consensus       604 ~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l-------~-------gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~  669 (732)
                      +..+++||+.-..+|.+++||+.+++++..-       .       .....|+.+..+.+|.-|++-+. |....|+.+=
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEecccc
Confidence            4668999999999999999999998865432       2       46678999999999987777764 6677777653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.92  E-value=2.5  Score=48.31  Aligned_cols=201  Identities=15%  Similarity=0.086  Sum_probs=109.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCC-------e---------eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745           24 AISWNSKGSLLISGSDDTHINVWSYSSR-------K---------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus        24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~-------~---------~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      .++.++...+++.++..+.+.|+-..+-       .         ....+.-...-+|..+...++.....++..+.+-.
T Consensus        46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~  125 (1405)
T KOG3630|consen   46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA  125 (1405)
T ss_pred             hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence            4556665556666666666666643211       0         01112111233445555555521123333344557


Q ss_pred             EEEEEcCCCCCCCCCCCC-CCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           88 VRLFNLSRFSGRGLDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      |..||++........... ...............++.|+|.-+...+.+..|+.|++..+......              
T Consensus       126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~--------------  191 (1405)
T KOG3630|consen  126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQN--------------  191 (1405)
T ss_pred             EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhh--------------
Confidence            899999864322110000 00011122223456678888866666778888999998876544321              


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                                 ..........++++|+|. |+.++.|-..|++.-|-..-. ....+.       |.          ...
T Consensus       192 -----------v~s~p~t~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~le-ik~~ip-------~P----------p~~  241 (1405)
T KOG3630|consen  192 -----------VTSFPVTNSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSLE-IKSEIP-------EP----------PVE  241 (1405)
T ss_pred             -----------hcccCcccceeeEEeccc-cceeeEecCCCeEEEeecccc-eeeccc-------CC----------CcC
Confidence                       001122337799999998 899999999999988865422 111110       00          001


Q ss_pred             ccccEEEEEEcCCCCEEEEEec
Q 004745          247 SSLHLTHVTFSPNGEEVLLSYS  268 (732)
Q Consensus       247 ~~~~i~~l~~sp~g~~l~~~~~  268 (732)
                      ....|.+|.|-....+|+.-+.
T Consensus       242 e~yrvl~v~Wl~t~eflvvy~n  263 (1405)
T KOG3630|consen  242 ENYRVLSVTWLSTQEFLVVYGN  263 (1405)
T ss_pred             CCcceeEEEEecceeEEEEecc
Confidence            1225999999888777665443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.41  E-value=1.8  Score=45.08  Aligned_cols=99  Identities=11%  Similarity=0.102  Sum_probs=58.4

Q ss_pred             CccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC--
Q 004745          183 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--  260 (732)
Q Consensus       183 ~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g--  260 (732)
                      -...|..+..++. |..++..|.+|.+.++=.+...+-..+....+...|-..-....+.... ....+..++|+|+.  
T Consensus       102 V~feV~~vl~s~~-GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~  179 (741)
T KOG4460|consen  102 VLFEVYQVLLSPT-GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSIL  179 (741)
T ss_pred             ceEEEEEEEecCC-CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCccC
Confidence            3457888999998 7788888888877665433222222221111111221111111111111 22247889999976  


Q ss_pred             -CEEEEEecCCeEEEEECCCCCCc
Q 004745          261 -EEVLLSYSGEHVYLMDVNHAGGR  283 (732)
Q Consensus       261 -~~l~~~~~dg~v~iwd~~~~~~~  283 (732)
                       ..|+.-+.|+.||+||+......
T Consensus       180 D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  180 DPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             CceEEEEecCcEEEEEecCCcchh
Confidence             68899999999999999886543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.23  E-value=22  Score=37.35  Aligned_cols=51  Identities=18%  Similarity=0.200  Sum_probs=37.7

Q ss_pred             CceeEEEEcC-----------CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEec
Q 004745           20 GCVNAISWNS-----------KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP   72 (732)
Q Consensus        20 ~~V~~l~~s~-----------dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~   72 (732)
                      +.|+++.+-|           |...++.|..+|.|++|.- +|..+..- .-|..+|..+....
T Consensus        57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q-~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTE-NGVLLLSQ-LLHEEPVLKIKCRS  118 (415)
T ss_pred             CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEec-cchHHHHH-hcCccceEEEEecc
Confidence            4677666543           4578999999999999984 66655544 46888999988764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.08  E-value=0.79  Score=30.00  Aligned_cols=32  Identities=16%  Similarity=0.089  Sum_probs=27.0

Q ss_pred             CceeEEEEecCCC--cEEEEEeCCCcEEEEECCC
Q 004745          117 RRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQ  148 (732)
Q Consensus       117 ~~v~~l~~~p~~~--~~l~s~s~dg~i~vwd~~~  148 (732)
                      +.|.++.|+|...  .+|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3688999998665  6888888889999999985

It contains a characteristic DLL sequence motif.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.00  E-value=2.9  Score=43.63  Aligned_cols=84  Identities=12%  Similarity=0.159  Sum_probs=58.5

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEec--CCCCC---------
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP--ETSDE---------   77 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~--~~~g~---------   77 (732)
                      +.....|......+.+++.+|++++.|+...=|.|.|+|+.++..++.+ +|..++=  +.|..  +....         
T Consensus       297 l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW-KGYRdAq--c~wi~~~~~~~~~~~~~~~~~  373 (415)
T PF14655_consen  297 LPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW-KGYRDAQ--CGWIEVPEEGDRDRSNSNSPK  373 (415)
T ss_pred             cceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh-ccCccce--EEEEEeecccccccccccccC
Confidence            3444556667778999999999999888877799999999999888777 6665542  22211  11011         


Q ss_pred             --------EEEEEECCCcEEEEEcCC
Q 004745           78 --------LVVSGAGDAEVRLFNLSR   95 (732)
Q Consensus        78 --------~l~s~~~dg~i~vwd~~~   95 (732)
                              +++-+-.-|.|.||.++.
T Consensus       374 ~~~~~~l~LvIyaprRg~lEvW~~~~  399 (415)
T PF14655_consen  374 SSSRFALFLVIYAPRRGILEVWSMRQ  399 (415)
T ss_pred             CCCcceEEEEEEeccCCeEEEEecCC
Confidence                    234455678888888875

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.84  E-value=7.4  Score=43.31  Aligned_cols=160  Identities=9%  Similarity=0.073  Sum_probs=94.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeEE------EEc---------------cCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           31 GSLLISGSDDTHINVWSYSSRKLLH------SIE---------------TGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        31 g~~lasg~~dg~i~vWd~~~~~~~~------~~~---------------~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      +.+|+.+. .+.|.||++.......      .+.               ..-...|+.|....-+....|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            66777765 5789999976432211      110               0112336666554433347899999999999


Q ss_pred             EEEcCCCC---------CCC-CCCCCCCCceeeccccCceeEEEEe--cCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004745           90 LFNLSRFS---------GRG-LDDNAITPSALYQCHTRRVKKLAVE--VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  157 (732)
Q Consensus        90 vwd~~~~~---------~~~-~~~~~~~~~~~~~~h~~~v~~l~~~--p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  157 (732)
                      +|.++.--         ... .......|...+. ...++++++++  . ..++||.++....|.||-.........   
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~---  202 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFY---  202 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEeccccccc---
Confidence            99774210         000 0001223444444 34589999998  5 448888888888888876554321100   


Q ss_pred             CCcccceEEeeccCCccccccCCCCCccceEEEEecCCC----CC-EEEEEeCCCeEEEEECC
Q 004745          158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR----PH-LLLVGGSDAFARLYDRR  215 (732)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~----~~-~l~tg~~dg~v~iwd~~  215 (732)
                                         ......+...|-+++|-++.    |. .+++++-.|.+.+|++.
T Consensus       203 -------------------~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  203 -------------------HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             -------------------cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence                               00001133467788887653    22 78888899999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.69  E-value=1.2  Score=29.26  Aligned_cols=32  Identities=16%  Similarity=0.277  Sum_probs=26.3

Q ss_pred             CceeEEEEcCCC---CEEEEEeCCCcEEEEeCCCC
Q 004745           20 GCVNAISWNSKG---SLLISGSDDTHINVWSYSSR   51 (732)
Q Consensus        20 ~~V~~l~~s~dg---~~lasg~~dg~i~vWd~~~~   51 (732)
                      +.|+++.|||+.   .+|+-+-.-+.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999844   58888877899999999853

It contains a characteristic DLL sequence motif.

>PHA02790 Kelch-like protein; Provisional

Probab=90.47  E-value=18  Score=39.27  Aligned_cols=106  Identities=8%  Similarity=-0.080  Sum_probs=50.9

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC--CcEEEEEcCCCCCCCCC
Q 004745           30 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AEVRLFNLSRFSGRGLD  102 (732)
Q Consensus        30 dg~~lasg~~dg-----~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d--g~i~vwd~~~~~~~~~~  102 (732)
                      ++..++.||.++     ++..||..+.+....-.-.....-.++.. -+  |.+.+.|+.+  ..+..||..+...    
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~--~~iYviGG~~~~~sve~ydp~~n~W----  343 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-AN--NKLYVVGGLPNPTSVERWFHGDAAW----  343 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-EC--CEEEEECCcCCCCceEEEECCCCeE----
Confidence            455667777543     56778888765433221111111122222 23  3667777754  3577788764321    


Q ss_pred             CCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC---cEEEEECCCC
Q 004745          103 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQG  149 (732)
Q Consensus       103 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg---~i~vwd~~~~  149 (732)
                          ..+..+.........+.+   ++++.+.||.++   .+..||..+.
T Consensus       344 ----~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        344 ----VNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             ----EECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCC
Confidence                112222211111112222   457777777653   3556776554

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.20  E-value=0.99  Score=49.95  Aligned_cols=135  Identities=13%  Similarity=0.034  Sum_probs=70.0

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC--CCcEEEEEe
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG--NPHVVWSAS  136 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~~l~s~s  136 (732)
                      ++..+.|..+.|..... ..+.  -.-|.+.|||+..-+++....-   .+.........+.-+.|.|.  +.-++..+-
T Consensus       129 kgf~G~v~dl~fah~~~-pk~~--~~vg~lfVy~vd~l~G~iq~~l---~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~  202 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKC-PKGR--RLVGELFVYDVDVLQGEIQPQL---EVTPITPYGSDPQLVSWCPIAVNKVYICYGL  202 (1283)
T ss_pred             hcCCCCcccccccccCC-hHHH--HHhhhhheeehHhhccccccce---EEeecCcCCCCcceeeecccccccceeeecc
Confidence            56677888888865321 2222  3347789999986544432110   11222223334455666653  224454555


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004745          137 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  215 (732)
Q Consensus       137 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~  215 (732)
                      .++.|++..+.+...  ..+.+|...           ...+.+.......+.  ..+|| |..+++++.||.++.|-+.
T Consensus       203 ~~~~i~lL~~~ra~~--~l~rsHs~~-----------~~d~a~~~~g~~~l~--~lSpD-Gtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  203 KGGEIRLLNINRALR--SLFRSHSQR-----------VTDMAFFAEGVLKLA--SLSPD-GTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             CCCceeEeeechHHH--HHHHhcCCC-----------cccHHHHhhchhhhe--eeCCC-CcEEEEeecCCccceeeee
Confidence            677888766654331  011111110           001111111111222  37898 8899999999999999765

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=88.66  E-value=29  Score=34.95  Aligned_cols=216  Identities=11%  Similarity=0.009  Sum_probs=99.0

Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCC
Q 004745           26 SWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  104 (732)
Q Consensus        26 ~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~  104 (732)
                      .|.++.. ++.+--..+.|.-|+..+++...-.   +...+.++.....  +..|+++.  .-+.+++++.......   
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~--~g~Lv~~~--~g~~~~~~~~~~~~t~---  100 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDA--GGRLIACE--HGVRLLDPDTGGKITL---  100 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecC--CCeEEEEc--cccEEEeccCCceeEE---
Confidence            4667666 4555557788999998866443222   2333445544444  25666653  3356667643221000   


Q ss_pred             CCCCceeeccc-cCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC
Q 004745          105 AITPSALYQCH-TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ  183 (732)
Q Consensus       105 ~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (732)
                         ......+. ....+.+...|++ .+.+ +....    ++  .....     .........++. .+...  .....+
T Consensus       101 ---~~~~~~~~~~~r~ND~~v~pdG-~~wf-gt~~~----~~--~~~~~-----~~~~G~lyr~~p-~g~~~--~l~~~~  161 (307)
T COG3386         101 ---LAEPEDGLPLNRPNDGVVDPDG-RIWF-GDMGY----FD--LGKSE-----ERPTGSLYRVDP-DGGVV--RLLDDD  161 (307)
T ss_pred             ---eccccCCCCcCCCCceeEcCCC-CEEE-eCCCc----cc--cCccc-----cCCcceEEEEcC-CCCEE--EeecCc
Confidence               00011111 1345566777754 3332 22221    22  00000     000000111111 11111  111122


Q ss_pred             ccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCE
Q 004745          184 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE  262 (732)
Q Consensus       184 ~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~  262 (732)
                      -..-+.|+|+|++..++++=+..+.|.-|++.. .-.+..        .-...+  .    ....+ ..-.++...+|.+
T Consensus       162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~--------~~~~~~--~----~~~~G-~PDG~~vDadG~l  226 (307)
T COG3386         162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG--------RRGFVD--F----DEEPG-LPDGMAVDADGNL  226 (307)
T ss_pred             EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC--------cceEEE--c----cCCCC-CCCceEEeCCCCE
Confidence            334578999999444444445568888888763 111100        000000  0    00111 2445778888887


Q ss_pred             EEEEecCC-eEEEEECCCCCCccee
Q 004745          263 VLLSYSGE-HVYLMDVNHAGGRAMR  286 (732)
Q Consensus       263 l~~~~~dg-~v~iwd~~~~~~~~~~  286 (732)
                      .+++..+| .|.+|+.. ++.....
T Consensus       227 w~~a~~~g~~v~~~~pd-G~l~~~i  250 (307)
T COG3386         227 WVAAVWGGGRVVRFNPD-GKLLGEI  250 (307)
T ss_pred             EEecccCCceEEEECCC-CcEEEEE
Confidence            65555554 89999888 5544433

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=88.54  E-value=27  Score=34.53  Aligned_cols=160  Identities=17%  Similarity=0.204  Sum_probs=83.0

Q ss_pred             CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004745           76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  155 (732)
Q Consensus        76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  155 (732)
                      ++.|+.|..+| +.++++.....         +....  +...|..+...|.- +.++.-+ |+.+.++++..-......
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~---------~~~i~--~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~   72 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSK---------PTRIL--KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTS   72 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCcc---------ceeEe--ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccc
Confidence            57899999888 89999832211         12222  33449999999854 5555554 499999999876643211


Q ss_pred             CCCCcccceEEeeccCCccccccCCCCCccceEEEE-ecCCCCCEEEEEeCCCeEEEEECCCCCCCc-ccccCCCCCCcc
Q 004745          156 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD-ISSTRPHLLLVGGSDAFARLYDRRMLPPLT-SCQKRMSPPPCV  233 (732)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~  233 (732)
                      ...... ..          ............+...+ -....+...++......|.+|......... ..         .
T Consensus        73 ~~~~~~-~~----------~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~---------~  132 (275)
T PF00780_consen   73 APLAFP-KS----------RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKL---------L  132 (275)
T ss_pred             cccccc-cc----------ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccce---------e
Confidence            100000 00          00000001111233333 111223344444445689998876531110 00         0


Q ss_pred             ccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          234 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       234 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      +.   ..+      ...+..++|.  ++.|+.|..+ ...+.|+.++.
T Consensus       133 ke---~~l------p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~  168 (275)
T PF00780_consen  133 KE---ISL------PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGS  168 (275)
T ss_pred             EE---EEc------CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCC
Confidence            00   011      1258889998  5567777654 58889998743

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=88.52  E-value=6.5  Score=41.92  Aligned_cols=122  Identities=16%  Similarity=0.138  Sum_probs=71.7

Q ss_pred             ccCCceeEEEEcCC----CCEEEEEeCCCcEEEEeCC-----CCeeE----EEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745           17 GHQGCVNAISWNSK----GSLLISGSDDTHINVWSYS-----SRKLL----HSIETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus        17 ~h~~~V~~l~~s~d----g~~lasg~~dg~i~vWd~~-----~~~~~----~~~~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      |.-+-|..+.|.|-    -..|........|.||.+.     +.+.+    ..+.....---..+.|+|..  ..|+.-.
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--~iL~VLT  131 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK--AILTVLT  131 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC--ceEEEEe
Confidence            34467899999984    2234445566899999875     22222    22211111112467799984  5555444


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  149 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~  149 (732)
                      ....-.++++...+.+         ++.-..-.+.|.|.+|.+||.++++..+..=.-++||-...
T Consensus       132 ~~dvSV~~sV~~d~sr---------VkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  132 ARDVSVLPSVHCDSSR---------VKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             cCceeEeeeeeeCCce---------EEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            4444445666543221         22222346789999999988777766666556778986544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=88.25  E-value=3.6  Score=40.23  Aligned_cols=111  Identities=11%  Similarity=0.008  Sum_probs=66.0

Q ss_pred             CccccccCCCCCCCCCCC-CCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEE-cCcc
Q 004745          551 SARETVDANGSSGSPSSS-SQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWE-KQTG  628 (732)
Q Consensus       551 ~v~~~~~s~d~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd-~~tg  628 (732)
                      .+.+.+.|+|++.+|... .++...+|...........+.|.  .   +..-+ |+++|...+....+...+++. ..++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~---l~~PS-~d~~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--S---LTRPS-WDPDGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--c---ccccc-ccCCCCEEEEEcCCCceEEEEecCCC
Confidence            578999999999887764 12333444333322233333444  2   33333 599988888877777777774 4444


Q ss_pred             cEEE-EEecC-c-ccEEEEeecCCCCeEEEec---CCCcEEEEcC
Q 004745          629 RLIK-MLLGD-E-AVVNCVQCHPFDCVVATSG---IDNTIKIWTP  667 (732)
Q Consensus       629 ~~~~-~l~gH-~-~~V~~v~fsp~~~~l~S~s---~D~~i~vW~~  667 (732)
                      +... .+..- . ..|+++++||||..+|-..   .++.|.|=-+
T Consensus        99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen   99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence            4322 12111 1 2899999999998544443   4566666543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=87.75  E-value=21  Score=38.39  Aligned_cols=158  Identities=11%  Similarity=0.137  Sum_probs=86.3

Q ss_pred             CCceeEEEEcCCCCEEE-EEe--CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCC--CCEEEEEECCCcEEEEEc
Q 004745           19 QGCVNAISWNSKGSLLI-SGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS--DELVVSGAGDAEVRLFNL   93 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~la-sg~--~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~--g~~l~s~~~dg~i~vwd~   93 (732)
                      -.+|..++|. ||+.++ |.-  .+|.++.=   +-+.+..|     ..|.++.|.|-..  -..|++.-....|.||-+
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfG---ds~viGqF-----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFG---DSKVIGQF-----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL   89 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccC---CccEeecc-----ceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence            4588999997 666444 332  23444332   23344444     4588999998521  124666677889999988


Q ss_pred             CCCCCCCCCCCCCCCceeecccc-----CceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           94 SRFSGRGLDDNAITPSALYQCHT-----RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      .......     .+.+....++-     ---..+.|+|.. .+|+.-.....-.+++++....            ..-.|
T Consensus        90 ~~s~~e~-----~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~s------------rVkaD  151 (671)
T PF15390_consen   90 CPSTTER-----NKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSS------------RVKAD  151 (671)
T ss_pred             ccCcccc-----ccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCc------------eEEEe
Confidence            6321111     01122111111     112356799954 5665544443334556554331            11222


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEE-EeCCCeEEEEECCC
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRM  216 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t-g~~dg~v~iwd~~~  216 (732)
                      +            ...+.|.|.+|..| |.+|++ .++.=.-+|||-..
T Consensus       152 i------------~~~G~IhCACWT~D-G~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  152 I------------KTSGLIHCACWTKD-GQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             c------------cCCceEEEEEecCc-CCEEEEEeCCeEEEEEecCch
Confidence            2            23458999999999 555554 45555677888553

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=87.28  E-value=63  Score=37.35  Aligned_cols=72  Identities=11%  Similarity=0.042  Sum_probs=43.9

Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCccee-eecCCCC---ceeeeccCCCCccCCCCCCccCCCccccc
Q 004745          250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR-YTVGDAS---KIMSFTPTLNGLELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (732)
                      .|.++....-+..++..-.||+|.++|-.+.+..... .......   ......-.+.... .+..++|||.+..++
T Consensus       261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~-~~~~vafSPt~c~~v  336 (753)
T PF11635_consen  261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQ-PPLHVAFSPTMCSLV  336 (753)
T ss_pred             eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCC-CCceEEECcccceEE
Confidence            5888888888889999999999999999886544433 1111111   1111001111111 455678888777666

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.77  E-value=2.8  Score=27.23  Aligned_cols=31  Identities=13%  Similarity=0.127  Sum_probs=24.8

Q ss_pred             CCCCEEEEe-cCCCcEEEEEcCcccEEEEEec
Q 004745          606 QRGDYIASG-SDDGRWFIWEKQTGRLIKMLLG  636 (732)
Q Consensus       606 ~dg~~lasg-s~Dg~i~iWd~~tg~~~~~l~g  636 (732)
                      ||+++|..+ ..+++|.++|..+++.+..+.-
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            577766554 4688999999999998888776

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=86.67  E-value=15  Score=34.38  Aligned_cols=125  Identities=10%  Similarity=0.072  Sum_probs=65.9

Q ss_pred             CCceeEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           19 QGCVNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~d---------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      +...+.-..+|+|++.+-.-.|         |.++.|-.. + .+..+ ...-.--+.++|+.+. ..+.+.-+.+-.|.
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h-~v~~i-~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-H-QVELI-WNCVGISNGLAWDSDA-KKFYYIDSLNYEVD  183 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-C-Cceee-ehhccCCccccccccC-cEEEEEccCceEEe
Confidence            3455666778999985433222         233333221 1 11111 1112223678898775 24556667788888


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeecc----ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQC----HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  151 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~  151 (732)
                      -||..-..+.....   +.+..++.    ..-..-.++... .+++++++-..++|...|..+++.
T Consensus       184 a~dyd~~tG~~snr---~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~  245 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNR---KVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKI  245 (310)
T ss_pred             eeecCCCcccccCc---ceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcE
Confidence            89854433333211   11121211    011122344444 457888888889999999999874

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=86.62  E-value=1.7  Score=48.24  Aligned_cols=101  Identities=16%  Similarity=0.189  Sum_probs=64.9

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcC-ccc----EEEEEecCcc--cEEEEeecCCC---------CeEEEec-CCCcEEEEc
Q 004745          604 LGQRGDYIASGSDDGRWFIWEKQ-TGR----LIKMLLGDEA--VVNCVQCHPFD---------CVVATSG-IDNTIKIWT  666 (732)
Q Consensus       604 ~s~dg~~lasgs~Dg~i~iWd~~-tg~----~~~~l~gH~~--~V~~v~fsp~~---------~~l~S~s-~D~~i~vW~  666 (732)
                      .||||..+|.++.||.++.|.+. +|+    |++..+.|.+  .|..+ |+...         .+++++. ...-+++|.
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~  321 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWA  321 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEee
Confidence            49999999999999999999764 443    5556666763  24444 44322         2344444 355699999


Q ss_pred             CCCCCCccc--------cCCCCCCCchh------HHHHHHHHHHHhhhccccc
Q 004745          667 PSASVPSIV--------SGGAAGPDTAD------VLEAMESNQRKLSRNREHS  705 (732)
Q Consensus       667 ~~~~~~~~~--------~~gh~~~~~~~------~~~~~~~~~~~~~~~~~~~  705 (732)
                      ....+++..        ..-|.+.++.+      ....+..+-+.+..+|.-.
T Consensus       322 ~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~  374 (1283)
T KOG1916|consen  322 EAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR  374 (1283)
T ss_pred             ccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence            998887722        12366676642      3445566666666666554

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.15  E-value=5.2  Score=45.92  Aligned_cols=118  Identities=7%  Similarity=-0.026  Sum_probs=77.4

Q ss_pred             CCceeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeeE--------EE--EccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745           19 QGCVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLL--------HS--IETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~--~dg~i~vWd~~~~~~~--------~~--~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      .-+|..+...+|+...++..  .+-.|..+|+++...-        +.  .......-..++.|.|.- ....+.+..|+
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-p~n~av~l~dl  178 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-PLNSAVDLSDL  178 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-cchhhhhcccc
Confidence            35677777788877655543  3447889998753211        11  101122445788999875 35677788899


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  148 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  148 (732)
                      .|++.-+......         +..+ ......++++|+|.+ ..++.|-..|++..|...-
T Consensus       179 sl~V~~~~~~~~~---------v~s~-p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  179 SLRVKSTKQLAQN---------VTSF-PVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             chhhhhhhhhhhh---------hccc-CcccceeeEEecccc-ceeeEecCCCeEEEeeccc
Confidence            9999877642211         1222 245678999999954 8888999999999887543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=85.72  E-value=22  Score=36.98  Aligned_cols=72  Identities=19%  Similarity=0.154  Sum_probs=38.9

Q ss_pred             cCeEEEEEecCCCCCEEEEEE-----------CCC-cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCc
Q 004745           63 ANVFCTKFVPETSDELVVSGA-----------GDA-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH  130 (732)
Q Consensus        63 ~~V~~~~~s~~~~g~~l~s~~-----------~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  130 (732)
                      .....|+|.++  |+++++-.           ..+ .|.+++-....+..      .....+.......+.+++.+++  
T Consensus        14 ~~P~~ia~d~~--G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~------d~~~vfa~~l~~p~Gi~~~~~G--   83 (367)
T TIGR02604        14 RNPIAVCFDER--GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY------DKSNVFAEELSMVTGLAVAVGG--   83 (367)
T ss_pred             CCCceeeECCC--CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc------ceeEEeecCCCCccceeEecCC--
Confidence            44578899888  57666642           223 67777655444332      1123333334456889998843  


Q ss_pred             EEEEEeCCCcEEEE-EC
Q 004745          131 VVWSASEDGTLRQH-DF  146 (732)
Q Consensus       131 ~l~s~s~dg~i~vw-d~  146 (732)
                      ++++ ... .|..+ |.
T Consensus        84 lyV~-~~~-~i~~~~d~   98 (367)
T TIGR02604        84 VYVA-TPP-DILFLRDK   98 (367)
T ss_pred             EEEe-CCC-eEEEEeCC
Confidence            5543 443 34433 44

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.55  E-value=5.4  Score=37.90  Aligned_cols=65  Identities=14%  Similarity=0.233  Sum_probs=43.5

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCeeEEEE------cc-------CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004745           27 WNSKGSLLISGSDDTHINVWSYSSRKLLHSI------ET-------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL   93 (732)
Q Consensus        27 ~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~------~~-------~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~   93 (732)
                      +..++++|++-..+|.+++||+.+++.+..-      ..       .....|..+.++.+  |.-|++-+ +|..+.|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~--G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN--GVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC--CCEEEEEe-CCCEEEecc
Confidence            4456888999999999999999998765432      11       23455666777655  45555543 466677766


Q ss_pred             C
Q 004745           94 S   94 (732)
Q Consensus        94 ~   94 (732)
                      .
T Consensus        95 ~   95 (219)
T PF07569_consen   95 D   95 (219)
T ss_pred             c
Confidence            5

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=85.43  E-value=38  Score=33.05  Aligned_cols=154  Identities=16%  Similarity=0.160  Sum_probs=85.2

Q ss_pred             ceeEEEEcCCCCEEEEEe---CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE-cCCC
Q 004745           21 CVNAISWNSKGSLLISGS---DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN-LSRF   96 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~---~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd-~~~~   96 (732)
                      .+...++++|++.+|...   ....++++.  .+.....+..+  ..+..-.|+++  +...+....+...+++. ...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g--~~l~~PS~d~~--g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTG--GSLTRPSWDPD--GWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccC--CccccccccCC--CCEEEEEcCCCceEEEEecCCC
Confidence            788999999999777655   233455554  33333333222  36788899998  46666666666677774 2222


Q ss_pred             CCCCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEE--eCCCcEEEEECCCCCCC-CCCCCCCcccceEEeeccCC
Q 004745           97 SGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFRQGSSC-PPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~--s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~  172 (732)
                      ....        +..- ..-...|..+.++|++.+..+..  ..++.|.+=-+.....- ...          +.     
T Consensus        99 ~~~~--------~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~----------l~-----  155 (253)
T PF10647_consen   99 TGEP--------VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR----------LT-----  155 (253)
T ss_pred             ccee--------EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce----------ec-----
Confidence            2111        1111 11112899999999775554444  23467777665443311 000          00     


Q ss_pred             ccccccCCCCCccceEEEEecCCCCCEEEEEeCC
Q 004745          173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD  206 (732)
Q Consensus       173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d  206 (732)
                        ..+.........+.+++|.++ ..+++.+...
T Consensus       156 --~~~~~~~~~~~~v~~v~W~~~-~~L~V~~~~~  186 (253)
T PF10647_consen  156 --GPRRVAPPLLSDVTDVAWSDD-STLVVLGRSA  186 (253)
T ss_pred             --cceEecccccCcceeeeecCC-CEEEEEeCCC
Confidence              001111122347899999998 5565555443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=85.10  E-value=79  Score=36.41  Aligned_cols=68  Identities=12%  Similarity=0.105  Sum_probs=52.3

Q ss_pred             eeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCC
Q 004745          598 IKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS  670 (732)
Q Consensus       598 i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~  670 (732)
                      +.-+.|   +|++||.-.  ..|++|++.+++.++.=..|...++.+...-.+..++.|.-=+.|-+--.+..
T Consensus       833 ~aL~~f---ngkllA~In--~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~  900 (1096)
T KOG1897|consen  833 YALVEF---NGKLLAGIN--QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD  900 (1096)
T ss_pred             eehhhh---CCeEEEecC--cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence            444555   889988654  57999999999888888889999999999998998888876665554444333

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=84.48  E-value=15  Score=40.64  Aligned_cols=85  Identities=13%  Similarity=0.173  Sum_probs=48.2

Q ss_pred             CccceEEEEec--CCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC
Q 004745          183 QTLSLKSCDIS--STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  260 (732)
Q Consensus       183 ~~~~v~~i~~~--~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g  260 (732)
                      ....|.++.|.  |+ +..+++.|....|.+|-..........       ++.........  ..+...+|.+..|.++|
T Consensus        71 ~~~~I~dLDWtst~d-~qsiLaVGf~~~v~l~~Q~R~dy~~~~-------p~w~~i~~i~i--~~~T~h~Igds~Wl~~G  140 (631)
T PF12234_consen   71 EDDPIRDLDWTSTPD-GQSILAVGFPHHVLLYTQLRYDYTNKG-------PSWAPIRKIDI--SSHTPHPIGDSIWLKDG  140 (631)
T ss_pred             CCCceeeceeeecCC-CCEEEEEEcCcEEEEEEccchhhhcCC-------cccceeEEEEe--ecCCCCCccceeEecCC
Confidence            34478888885  55 667777788899999965321111110       01111111111  22333368899999999


Q ss_pred             CEEEEEecCCeEEEEECCC
Q 004745          261 EEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       261 ~~l~~~~~dg~v~iwd~~~  279 (732)
                      ..++++  ++++.|++-.-
T Consensus       141 ~LvV~s--GNqlfv~dk~~  157 (631)
T PF12234_consen  141 TLVVGS--GNQLFVFDKWL  157 (631)
T ss_pred             eEEEEe--CCEEEEECCCc
Confidence            744443  45788887543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=84.29  E-value=2  Score=42.98  Aligned_cols=58  Identities=9%  Similarity=0.123  Sum_probs=45.3

Q ss_pred             cEEEEEcCcccEEEEEecCcccEEEEeecCCCC-eEEEe-cCCCcEEEEcCCCCCCccccC
Q 004745          619 RWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATS-GIDNTIKIWTPSASVPSIVSG  677 (732)
Q Consensus       619 ~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~-~l~S~-s~D~~i~vW~~~~~~~~~~~~  677 (732)
                      .|-++|+++++.++++.. ...+.+++.+.+.+ +|... ..++.|.|||..+++.+....
T Consensus       270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            467779999999999985 34688999999886 77654 568999999999999887654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PHA03098 kelch-like protein; Provisional

Probab=83.92  E-value=26  Score=38.80  Aligned_cols=65  Identities=15%  Similarity=0.170  Sum_probs=34.0

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC------CcEEEEEcCCCC
Q 004745           30 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRFS   97 (732)
Q Consensus        30 dg~~lasg~~d-----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d------g~i~vwd~~~~~   97 (732)
                      +++.++.||.+     ..+..||..+.+....-...+...-.+++.. +  +.+++.|+.+      ..+..||+.+..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~-~--~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV-N--NLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE-C--CEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            56677777764     3577788877654321100111111122222 2  3677777632      357888887643

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=83.90  E-value=0.2  Score=51.24  Aligned_cols=147  Identities=10%  Similarity=0.085  Sum_probs=93.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCC
Q 004745           21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  100 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~  100 (732)
                      .-....|-|.+.-|+.++.+..+..|| +.++.....  ..++....++|..+. +..++.+-..+.+.+||+.+..-..
T Consensus        36 ~pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~--n~tg~aldm~wDkeg-dvlavlAek~~piylwd~n~eytqq  111 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILEL--NPTGKALDMAWDKEG-DVLAVLAEKTGPIYLWDVNSEYTQQ  111 (615)
T ss_pred             ccceeeEecCCCceehhhhhhHHHhhh-hhcceeccc--CCchhHhhhhhcccc-chhhhhhhcCCCeeechhhhhhHHH
Confidence            334567788777788888999999999 445544444  345667788898864 3556666778999999998632111


Q ss_pred             CCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCC
Q 004745          101 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  180 (732)
Q Consensus       101 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (732)
                              +..--.|....  +.|++ +...++.+...|.+.+++..+.+...                         ..
T Consensus       112 --------LE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~ii-------------------------v~  155 (615)
T KOG2247|consen  112 --------LESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRII-------------------------VM  155 (615)
T ss_pred             --------HhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhhhh-------------------------hh
Confidence                    11111122222  67887 55677778888999999987765321                         11


Q ss_pred             CCCccceEEEEecCCCCCEEEEEeCCCeE
Q 004745          181 PKQTLSLKSCDISSTRPHLLLVGGSDAFA  209 (732)
Q Consensus       181 ~~~~~~v~~i~~~~~~~~~l~tg~~dg~v  209 (732)
                      ..|...++++++.+. + +.+.++.|..+
T Consensus       156 Gkh~RRgtq~av~lE-d-~vil~dcd~~L  182 (615)
T KOG2247|consen  156 GKHQRRGTQIAVTLE-D-YVILCDCDNTL  182 (615)
T ss_pred             cccccceeEEEeccc-c-eeeecCcHHHH
Confidence            224446777777775 2 55555555443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=83.82  E-value=62  Score=34.12  Aligned_cols=164  Identities=8%  Similarity=0.066  Sum_probs=87.5

Q ss_pred             CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe---cC-CCcEEEEEeCCCcEEEEECCCCCC
Q 004745           76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE---VG-NPHVVWSASEDGTLRQHDFRQGSS  151 (732)
Q Consensus        76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---p~-~~~~l~s~s~dg~i~vwd~~~~~~  151 (732)
                      ...|+.|+..|.++||+......+..     ..+.. ..-..+|..+..-   +. +...||.- .-..+.+|.+.....
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~-----~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g  109 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPE-----DLLLE-TQLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDG  109 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCc-----cEEEE-EecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCC
Confidence            36899999999999999964321210     11122 2245678777653   21 22344443 346788888733221


Q ss_pred             CCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC-CCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCC
Q 004745          152 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  230 (732)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~  230 (732)
                      .  ...+..-....++...         ............|-.. +..++.+-+.||.+.+|+-+...-           
T Consensus       110 ~--~~~g~~~~L~~~yeh~---------l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f-----------  167 (418)
T PF14727_consen  110 T--VEHGNQYQLELIYEHS---------LQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF-----------  167 (418)
T ss_pred             C--cccCcEEEEEEEEEEe---------cccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE-----------
Confidence            0  0000000011111100         0111112222223222 136888899999999999875321           


Q ss_pred             CccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          231 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                         ..+.+..+.        .-.+.|.+....+++++.+..|..|....
T Consensus       168 ---~~~lp~~ll--------PgPl~Y~~~tDsfvt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  168 ---SRFLPDFLL--------PGPLCYCPRTDSFVTASSSWTLECYKYQD  205 (418)
T ss_pred             ---EEEcCCCCC--------CcCeEEeecCCEEEEecCceeEEEecHHH
Confidence               112222111        22378888888999999999999997655

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=83.82  E-value=2.6  Score=46.74  Aligned_cols=71  Identities=17%  Similarity=0.271  Sum_probs=44.2

Q ss_pred             CCCCEEEEecCCCcEEEEEcCc----ccE-EEEEecC---------------------cccEEEEeecC----CCCeEEE
Q 004745          606 QRGDYIASGSDDGRWFIWEKQT----GRL-IKMLLGD---------------------EAVVNCVQCHP----FDCVVAT  655 (732)
Q Consensus       606 ~dg~~lasgs~Dg~i~iWd~~t----g~~-~~~l~gH---------------------~~~V~~v~fsp----~~~~l~S  655 (732)
                      ++...|+.+..||.+.......    +.. ...+...                     ...+.+++.++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3556677777788777776654    221 1122111                     24577777877    6779999


Q ss_pred             ecCCCcEEEEcCCCCCCcccc
Q 004745          656 SGIDNTIKIWTPSASVPSIVS  676 (732)
Q Consensus       656 ~s~D~~i~vW~~~~~~~~~~~  676 (732)
                      .+.|+++|+||+.+++++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=83.12  E-value=47  Score=35.00  Aligned_cols=155  Identities=14%  Similarity=0.101  Sum_probs=89.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCe-----eEEEEccCCCcCeEEEEEe---cCCCCCEEEEEECCCcEEEEEcCCCCCCCCC
Q 004745           31 GSLLISGSDDTHINVWSYSSRK-----LLHSIETGHSANVFCTKFV---PETSDELVVSGAGDAEVRLFNLSRFSGRGLD  102 (732)
Q Consensus        31 g~~lasg~~dg~i~vWd~~~~~-----~~~~~~~~h~~~V~~~~~s---~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~  102 (732)
                      ...+++|+..|.++|++.....     .+.+  ..-+.+|..++.-   +.. ....++.-.-..+.||.+....+....
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE--~~l~~PILqv~~G~F~s~~-~~~~LaVLhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE--TQLKDPILQVECGKFVSGS-EDLQLAVLHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEE--EecCCcEEEEEeccccCCC-CcceEEEecCCEEEEEEEEecCCCccc
Confidence            3589999999999999986543     2222  2345778777643   333 233444467788999998654333111


Q ss_pred             CCCCCCceeeccccCc--eeEEEEecC----CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004745          103 DNAITPSALYQCHTRR--VKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  176 (732)
Q Consensus       103 ~~~~~~~~~~~~h~~~--v~~l~~~p~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (732)
                      ... ..+..+..|.-.  ...+.+-|-    +..+|..=+.||.+.+++-+.-..                .        
T Consensus       114 g~~-~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f----------------~--------  168 (418)
T PF14727_consen  114 GNQ-YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF----------------S--------  168 (418)
T ss_pred             CcE-EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE----------------E--------
Confidence            111 112333344433  223333232    236788889999999998655320                0        


Q ss_pred             ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004745          177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  216 (732)
Q Consensus       177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~  216 (732)
                       ...++ .--...+.+.+. ...|++++.+..|..|....
T Consensus       169 -~~lp~-~llPgPl~Y~~~-tDsfvt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  169 -RFLPD-FLLPGPLCYCPR-TDSFVTASSSWTLECYKYQD  205 (418)
T ss_pred             -EEcCC-CCCCcCeEEeec-CCEEEEecCceeEEEecHHH
Confidence             00000 001123567776 66899999998999987643

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=82.75  E-value=40  Score=35.53  Aligned_cols=126  Identities=10%  Similarity=0.111  Sum_probs=75.9

Q ss_pred             hhhccccEeeeccCCceeEEEEcCCCC-------EEEEEeCCCcEEEEeCC-CCeeEEEEc-c--CCCcCeEEEEEecCC
Q 004745            6 VRRLSQERELEGHQGCVNAISWNSKGS-------LLISGSDDTHINVWSYS-SRKLLHSIE-T--GHSANVFCTKFVPET   74 (732)
Q Consensus         6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~-------~lasg~~dg~i~vWd~~-~~~~~~~~~-~--~h~~~V~~~~~s~~~   74 (732)
                      +.+++++.++.-|.+-  -+.|.|+.+       .-+.|-.+..|.-.|.+ .|..+.... .  .-+....|..-... 
T Consensus       497 IErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTes-  573 (776)
T COG5167         497 IERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTES-  573 (776)
T ss_pred             cccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccccccccC-
Confidence            4567788888877665  577888432       23345556666666765 332222220 1  11222233332233 


Q ss_pred             CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004745           75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  148 (732)
Q Consensus        75 ~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  148 (732)
                        .+++.++..|-|++||--...          ....+.+....|..|..+.+|..+|+||-  ..+.+-|+.-
T Consensus       574 --GyIa~as~kGDirLyDRig~r----------AKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~i  633 (776)
T COG5167         574 --GYIAAASRKGDIRLYDRIGKR----------AKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVPI  633 (776)
T ss_pred             --ceEEEecCCCceeeehhhcch----------hhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEeccc
Confidence              699999999999999854211          12345666788999999997755555543  5788888754

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=82.59  E-value=40  Score=31.11  Aligned_cols=65  Identities=14%  Similarity=0.087  Sum_probs=37.4

Q ss_pred             CCCEEEEEeC--CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           30 KGSLLISGSD--DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        30 dg~~lasg~~--dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      +|.++.+.+.  ...|++||+.+++.+....-. ...+..=-...-+ +....-.-.+|.-..+|.++.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~g-d~~y~LTw~egvaf~~d~~t~  121 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLG-DYFYQLTWKEGVAFKYDADTL  121 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecC-Cccccccceeecc-ceEEEEEeccceeEEEChHHh
Confidence            5566666653  457999999999887665222 1223222122221 123333456888888988863

>PHA02790 Kelch-like protein; Provisional

Probab=82.42  E-value=36  Score=36.97  Aligned_cols=64  Identities=9%  Similarity=0.073  Sum_probs=33.7

Q ss_pred             CCCEEEEEeCC--CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC---cEEEEEcCCC
Q 004745           30 KGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---EVRLFNLSRF   96 (732)
Q Consensus        30 dg~~lasg~~d--g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg---~i~vwd~~~~   96 (732)
                      +|...+.||.+  .++..||..+++....-.-.....-.+++.. +  |.+.+.|+.++   .+..||..+.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~-~--g~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI-N--NVIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE-C--CEEEEecCcCCCCccEEEEeCCCC
Confidence            56666777753  3578888776644322100111111122222 3  36777777653   4678888753

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.23  E-value=4.3  Score=43.26  Aligned_cols=67  Identities=10%  Similarity=0.041  Sum_probs=45.4

Q ss_pred             ccCCCCEEEEe-----cCCCcEEEEEcCcccEEEEE-ecCcccEEEEeecCCCCeEEEecCCC-----------cEEEEc
Q 004745          604 LGQRGDYIASG-----SDDGRWFIWEKQTGRLIKML-LGDEAVVNCVQCHPFDCVVATSGIDN-----------TIKIWT  666 (732)
Q Consensus       604 ~s~dg~~lasg-----s~Dg~i~iWd~~tg~~~~~l-~gH~~~V~~v~fsp~~~~l~S~s~D~-----------~i~vW~  666 (732)
                      +||||++||-+     +...+|++.|+++|+.+..- .+ ... ..+.|.++++.|+-...|.           .|+.|.
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~  208 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK  208 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-ccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence            59999999853     34456999999999877633 32 211 2399999998655554333           378888


Q ss_pred             CCCCCC
Q 004745          667 PSASVP  672 (732)
Q Consensus       667 ~~~~~~  672 (732)
                      +.+...
T Consensus       209 ~gt~~~  214 (414)
T PF02897_consen  209 LGTPQS  214 (414)
T ss_dssp             TTS-GG
T ss_pred             CCCChH
Confidence            877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=82.11  E-value=34  Score=35.69  Aligned_cols=131  Identities=16%  Similarity=0.194  Sum_probs=65.5

Q ss_pred             eeEEEEcCCCCEEEEEeC--------------------CCcEEEEeCCCCeeEEEEccCCCc-CeEEEEEecCCCCC-EE
Q 004745           22 VNAISWNSKGSLLISGSD--------------------DTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDE-LV   79 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~~--------------------dg~i~vWd~~~~~~~~~~~~~h~~-~V~~~~~s~~~~g~-~l   79 (732)
                      -+.+-|.|..+.++|...                    -.++.+||+.+.+.++++--+.++ .+..+.|..+.... -+
T Consensus       183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF  262 (461)
T PF05694_consen  183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF  262 (461)
T ss_dssp             ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred             CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence            445677787778887642                    357999999999999998545444 46788887653222 34


Q ss_pred             EEEECCCcEEEEEc-CCCCCCC---CC--------CCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004745           80 VSGAGDAEVRLFNL-SRFSGRG---LD--------DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  147 (732)
Q Consensus        80 ~s~~~dg~i~vwd~-~~~~~~~---~~--------~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~  147 (732)
                      +.+.-..+|..|-- +.+.-..   ..        ..-...++.+..-..-|+.|..+.|+.-+.+++=.+|.|+.||+.
T Consensus       263 vg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  263 VGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             EEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred             EEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence            44444555554433 2111000   00        000011122222245689999999875555667779999999998


Q ss_pred             CCCCC
Q 004745          148 QGSSC  152 (732)
Q Consensus       148 ~~~~~  152 (732)
                      ....+
T Consensus       343 DP~~P  347 (461)
T PF05694_consen  343 DPFNP  347 (461)
T ss_dssp             STTS-
T ss_pred             CCCCC
Confidence            87643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=81.35  E-value=91  Score=34.33  Aligned_cols=63  Identities=14%  Similarity=0.183  Sum_probs=42.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeE---E-------EEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004745           31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF---C-------TKFVPETSDELVVSGAGDAEVRLFNLSRFS   97 (732)
Q Consensus        31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~---~-------~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~   97 (732)
                      +..|+.++.++.|+-.|..+|+.+-++...-...+.   +       +++.    +..++.++.|+.|.-.|.++++
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~----~~~v~v~t~dg~l~ALDa~TGk  141 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY----DGKVFFGTLDARLVALDAKTGK  141 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE----CCEEEEEcCCCEEEEEECCCCC
Confidence            456777777889999999999988877322111111   1       1222    2467777889999999988754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=80.73  E-value=62  Score=32.01  Aligned_cols=229  Identities=10%  Similarity=0.065  Sum_probs=118.1

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCC------CC-eeEEEEcc--C--CCcCeEEEEEecCC----------CCCEEE
Q 004745           22 VNAISWNSKGSLLISGSDDTHINVWSYS------SR-KLLHSIET--G--HSANVFCTKFVPET----------SDELVV   80 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~~dg~i~vWd~~------~~-~~~~~~~~--~--h~~~V~~~~~s~~~----------~g~~l~   80 (732)
                      -..|+|+|.+.+-++...-+...+||..      .. ..+..+..  +  .....+.+.|+..+          ....++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4579999999888888778899999986      22 22333321  1  23467888887542          012367


Q ss_pred             EEECCCcEEEEEcCCCCCCCCCCCCCCCceeec-c-ccCceeEEEEecC--CCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004745           81 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-C-HTRRVKKLAVEVG--NPHVVWSASEDGTLRQHDFRQGSSCPPAG  156 (732)
Q Consensus        81 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~l~~~p~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  156 (732)
                      .+++||+|.-|..........     .....+. . .......+++.+.  +..+.++=-..++|.++|-.-.+...   
T Consensus       105 f~tEdGTisaW~p~v~~t~~~-----~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~---  176 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMT-----RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL---  176 (336)
T ss_pred             EEeCCceEEeecCcCCccccc-----ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC---
Confidence            788999999998643211000     0011111 1 1223445666542  32444455567899999854432110   


Q ss_pred             CCCcccceEEeeccCCccc-cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccc
Q 004745          157 SSHQECRNILLDLRCGAKR-SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  235 (732)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  235 (732)
                      .+......    +..+-.. -+.. .+....|+-..-.++ .+.=+.|..-|.|-+||+.- ..++.+..          
T Consensus       177 ~g~F~DP~----iPagyAPFnIqn-ig~~lyVtYA~qd~~-~~d~v~G~G~G~VdvFd~~G-~l~~r~as----------  239 (336)
T TIGR03118       177 PGSFIDPA----LPAGYAPFNVQN-LGGTLYVTYAQQDAD-RNDEVAGAGLGYVNVFTLNG-QLLRRVAS----------  239 (336)
T ss_pred             CCCccCCC----CCCCCCCcceEE-ECCeEEEEEEecCCc-ccccccCCCcceEEEEcCCC-cEEEEecc----------
Confidence            00000000    0000000 0000 011112333333443 33344455567899998863 22322211          


Q ss_pred             ccccccccCCCccccEEEEEEcC------CCCEEEEEecCCeEEEEECCCCCCcc
Q 004745          236 FCPMHLSEHGRSSLHLTHVTFSP------NGEEVLLSYSGEHVYLMDVNHAGGRA  284 (732)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~l~~sp------~g~~l~~~~~dg~v~iwd~~~~~~~~  284 (732)
                              .+.-+ ..+.|+..|      .|.+|+.--.||+|..||..++...-
T Consensus       240 --------~g~LN-aPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g  285 (336)
T TIGR03118       240 --------SGRLN-APWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLG  285 (336)
T ss_pred             --------CCccc-CCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceee
Confidence                    22222 356777766      46666666669999999998876443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	732
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		9e-11
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		9e-11
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-07
2gnq_A	336	Structure Of Wdr5 Length = 336		9e-11
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		7e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		7e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		8e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		7e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-07
2h9l_A	329	Wdr5delta23 Length = 329		1e-10
2h9l_A	329	Wdr5delta23 Length = 329		6e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-10
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-10
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-10
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-07
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		9e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		4e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		6e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		8e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		8e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		8e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		9e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 80  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 138
Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 139 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 187
Query: 132 VWSASEDGTLRQHDFRQG 149
             S+S DG  R  D   G
Sbjct: 188 --SSSYDGLCRIWDTASG 203

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 250 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK+W
Sbjct: 309 CHPTENIIASAALENDKTIKLW 330

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 132 VWSASEDGTLRQHDFRQG 149
             S+S DG  R  D   G
Sbjct: 172 --SSSYDGLCRIWDTASG 187

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 234 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK+W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 82  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 140
Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 141 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 189
Query: 132 VWSASEDGTLRQHDFRQG 149
             S+S DG  R  D   G
Sbjct: 190 --SSSYDGLCRIWDTASG 205

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 252 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 310
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK+W
Sbjct: 311 CHPTENIIASAALENDKTIKLW 332

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 58  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 116
Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 117 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 165
Query: 132 VWSASEDGTLRQHDFRQG 149
             S+S DG  R  D   G
Sbjct: 166 --SSSYDGLCRIWDTASG 181

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 228 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK+W
Sbjct: 287 CHPTENIIASAALENDKTIKLW 308

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 58  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 116
Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 117 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 165
Query: 132 VWSASEDGTLRQHDFRQG 149
             S+S DG  R  D   G
Sbjct: 166 --SSSYDGLCRIWDTASG 181

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 228 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK+W
Sbjct: 287 CHPTENIIASAALENDKTIKLW 308

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 54  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 112
Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 113 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 161
Query: 132 VWSASEDGTLRQHDFRQG 149
             S+S DG  R  D   G
Sbjct: 162 --SSSYDGLCRIWDTASG 177

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 224 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 282
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK+W
Sbjct: 283 CHPTENIIASAALENDKTIKLW 304

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 132 VWSASEDGTLRQHDFRQG 149
             S+S DG  R  D   G
Sbjct: 172 --SSSYDGLCRIWDTASG 187

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 234 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK+W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 59  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 117
Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 118 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 166
Query: 132 VWSASEDGTLRQHDFRQG 149
             S+S DG  R  D   G
Sbjct: 167 --SSSYDGLCRIWDTASG 182

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 229 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 287
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK+W
Sbjct: 288 CHPTENIIASAALENDKTIKLW 309

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 57  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 115
Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 116 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 164
Query: 132 VWSASEDGTLRQHDFRQG 149
             S+S DG  R  D   G
Sbjct: 165 --SSSYDGLCRIWDTASG 180

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 227 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 285
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK+W
Sbjct: 286 CHPTENIIASAALENDKTIKLW 307

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 132 VWSASEDGTLRQHDFRQG 149
             S+S DG  R  D   G
Sbjct: 172 --SSSYDGLCRIWDTASG 187

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 234 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK+W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 63  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 121
Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 122 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 170
Query: 132 VWSASEDGTLRQHDFRQG 149
             S+S DG  R  D   G
Sbjct: 171 --SSSYDGLCRIWDTASG 186

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 233 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 291
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK+W
Sbjct: 292 CHPTENIIASAALENDKTIKLW 313

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 75  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 133
Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 134 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 182
Query: 132 VWSASEDGTLRQHDFRQG 149
             S+S DG  R  D   G
Sbjct: 183 --SSSYDGLCRIWDTASG 198

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 245 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 303
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK+W
Sbjct: 304 CHPTENIIASAALENDKTIKLW 325

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 132 VWSASEDGTLRQHDFRQG 149
             S+S DG  R  D   G
Sbjct: 169 --SSSYDGLCRIWDTASG 184

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK+W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 132 VWSASEDGTLRQHDFRQG 149
             S+S DG  R  D   G
Sbjct: 169 --SSSYDGLCRIWDTASG 184

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK++
Sbjct: 290 CHPTENIIASAALENDKTIKLY 311

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 72  PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 132 VWSASEDGTLRQHDFRQG 149
             S+S DG  R  D   G
Sbjct: 169 --SSSYDGLCRIWDTASG 184

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 646 CHPFDCVVATSGIDN--TIKI 664
           CHP + ++A++ ++N  TIK+
Sbjct: 290 CHPTENIIASAALENDKTIKL 310

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 72  PETSDELVVSGAGDAEVRLFNL 93
           P+++  L+VSG+ D  VR++++
Sbjct: 120 PQSN--LIVSGSFDESVRIWDV 139

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK+W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 12  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 72  PETSDELVVSGAGDAEVRLFNL 93
           P+++  L+VSG+ D  VR++++
Sbjct: 120 PQSN--LIVSGSFDESVRIWDV 139

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
           CHP + ++A++ ++N  TIK+W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 9   LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 68
           ++  R L GH+  VN + ++ K   ++S S D  I VW+ S+ + + ++  GH   + C 
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACL 302
Query: 69  KFVPETSDELVVSGAGDAEVRLFNL 93
           ++     D LVVSG+ D  +RL+++
Sbjct: 303 QY----RDRLVVSGSSDNTIRLWDI 323

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 13  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
           + L GH   V  ++++  G  + S SDD  + +W+ +  +LL ++ TGHS++V+   F P
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP 436
Query: 73  ETSDELVVSGAGDAEVRLFN 92
           +  D+ + S + D  V+L+N
Sbjct: 437 D--DQTIASASDDKTVKLWN 454

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 667
           G  IAS SDD    +W +  G+L++ L G  + VN V   P    +A++  D T+K+W  
Sbjct: 233 GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR 291
Query: 668 SASV-------PSIVSGGAAGPDTADVLEAMESNQRKL-SRNREH 704
           +  +        S V G A  PD   +  A +    KL +RN +H
Sbjct: 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 13  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
           R L+GH G V ++ W  + + ++S S D  + VW+  + +  H+I+  H   V    F P
Sbjct: 60  RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAP 118
Query: 73  ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132
             + + V  G  D+   +FNLS  + R   D  +  S +   H                 
Sbjct: 119 --NGQSVACGGLDSACSIFNLSSQADR---DGNMPVSRVLTGHKGY-------------- 159
Query: 133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD---PPKQTLSLKS 189
             AS    +   + R        GS  Q C  +L D+  G + S+     P   T  + S
Sbjct: 160 --ASSCQYVPDQETRL-----ITGSGDQTC--VLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 190 CDISSTRPHLLLVGGSDAFARLYDRRM 216
             I+S   ++ + G  D   RL+D R+
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRI 237

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 22  VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVS 81
           + ++ ++  G  L +G++D  I +W   +RK++  ++ GH  +++   + P  S + +VS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFP--SGDKLVS 182
Query: 82  GAGDAEVRLFNL 93
           G+GD  VR+++L
Sbjct: 183 GSGDRTVRIWDL 194

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 3/138 (2%)
Query: 11  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 70
           Q   L+GH   V  ++W S G  L SG +D  + +W   S  +    +T H+A V    +
Sbjct: 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAW 267
Query: 71  VPETSDELVVSGAG-DAEVRLFNLSRFSG-RGLDDNAITPSALYQCHTRRVKKLAVEVGN 128
            P  S+ L   G   D ++  +N +  +    +D  +   S ++  H++ +        N
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN 327
Query: 129 PHVVWSASEDGTLRQHDF 146
              +WS S  G  +Q D 
Sbjct: 328 NLSIWSYSSSGLTKQVDI 345

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 9    LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS 56
            LS   EL+GH GCV   +++  G LL +G D+  I +W+ S  +LLHS
Sbjct: 1124 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 9    LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS 56
            LS   EL+GH GCV   +++  G LL +G D+  I +W+ S  +LLHS
Sbjct: 1117 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 45/180 (25%)
Query: 13  RELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 70
           R L GH G V    W+S  + +++ISGS D  + VW+  + + +H++  GH++ V C   
Sbjct: 153 RTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY-GHTSTVRCMHL 207
Query: 71  VPETSDELVVSGAGDAEVRLFNLS------------------RFSGRGLDDNAI------ 106
                ++ VVSG+ DA +R++++                   ++ GR +   A       
Sbjct: 208 ----HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKV 263
Query: 107 ----TPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 160
               T + L+  Q HT RV  L  +    HVV S S D ++R  D   G +C    + HQ
Sbjct: 264 WDPETETCLHTLQGHTNRVYSLQFD--GIHVV-SGSLDTSIRVWDVETG-NCIHTLTGHQ 319

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 15  LEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP 72
           ++ H   VN +S+N     +L +GS D  + +W   + KL LHS E+ H   +F  ++ P
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSP 327
Query: 73  ETSDELVVSGAGDAEVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 128
                L  SG  D  + +++LS+     S    +D       ++  HT ++   +     
Sbjct: 328 HNETILASSGT-DRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNE 386
Query: 129 PHVVWSASEDGTLR 142
           P V+ S SED  ++
Sbjct: 387 PWVICSVSEDNIMQ 400

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 10  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
           +  R   GH   V +++++S    ++SGS D  I +W+          +  HS  V C +
Sbjct: 96  TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 155
Query: 70  FVPETSDELVVSGAGDAEVRLFNLS 94
           F P +S+ ++VS   D  V+++NL+
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWNLA 180

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 10  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
           +  R   GH   V +++++S    ++SGS D  I +W+          +  HS  V C +
Sbjct: 119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178
Query: 70  FVPETSDELVVSGAGDAEVRLFNLS 94
           F P +S+ ++VS   D  V+++NL+
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWNLA 203

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 15  LEGHQGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP 72
           ++ H   VN +S+N     ++ +GS D  + +W   + KL LHS E+ H   +F  ++ P
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSP 335
Query: 73  ETSDELVVSGAGDAEVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 128
                L  SG  D  + +++LS+     S    +D       ++  HT ++   +     
Sbjct: 336 HNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 394
Query: 129 PHVVWSASEDGTLR 142
           P ++ S SED  ++
Sbjct: 395 PWIICSVSEDNIMQ 408

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 15  LEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP 72
           ++ H   VN +S+N     +L +GS D  + +W   + KL LHS E+ H   +F  ++ P
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSP 333
Query: 73  ETSDELVVSGAGDAEVRLFNLSRF-SGRGLDDNAITPSAL---YQCHTRRVKKLAVEVGN 128
                L  SG  D  + +++LS+    +  +D    P  L   +  HT ++   +     
Sbjct: 334 HNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 392
Query: 129 PHVVWSASEDGTLR 142
           P ++ S SED  ++
Sbjct: 393 PWIICSVSEDNIMQ 406

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 15  LEGHQGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP 72
           ++ H   VN +S+N     ++ +GS D  + +W   + KL LHS E+ H   +F  ++ P
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSP 331
Query: 73  ETSDELVVSGAGDAEVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 128
                L  SG  D  + +++LS+     S    +D       ++  HT ++   +     
Sbjct: 332 HNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390
Query: 129 PHVVWSASEDGTLR 142
           P ++ S SED  ++
Sbjct: 391 PWIICSVSEDNIMQ 404

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	732
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.98
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.95
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.83
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.78
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.78
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.76
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.73
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.73
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.73
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.72
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.71
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.7
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.68
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.65
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.65
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.65
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.65
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.62
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.58
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.56
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.56
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.55
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.55
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.53
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.51
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.51
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.5
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.46
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.45
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.42
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.41
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.39
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.38
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.38
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.36
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.34
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.33
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.3
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.29
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.28
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.27
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.22
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.21
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.2
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.2
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.2
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.17
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.16
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.13
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.12
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.11
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.1
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.09
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.05
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.05
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.01
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.01
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.99
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.94
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.94
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.93
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.93
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.92
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.91
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.9
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.85
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.82
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.81
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.77
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.77
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.77
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.76
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.75
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.72
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.69
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.64
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.62
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.57
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.53
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.52
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.5
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.48
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.48
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.44
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.42
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.39
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.36
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.26
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.23
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.16
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.15
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.13
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.08
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.05
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.04
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.04
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.02
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.02
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.94
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.92
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.91
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.8
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.79
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.76
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.74
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.73
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.73
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.72
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.71
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.68
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.64
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.63
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.6
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.57
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.55
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.54
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.52
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.5
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.49
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.48
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.47
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.44
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.38
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.33
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.32
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.26
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.22
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.2
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.03
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.89
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.8
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.77
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.76
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.7
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.64
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.62
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.6
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.51
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.49
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.47
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.46
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.3
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.24
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.21
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.17
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.98
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.75
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.63
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.47
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.41
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.38
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.81
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.62
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.4
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.03
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.89
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.85
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.48
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.36
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.22
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.97
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.24
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.13
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	90.9
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	90.75
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	90.67
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	90.64
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	90.55
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	90.23
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	90.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	88.86
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	88.64
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	88.58
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	88.14
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	87.96
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	87.26
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	86.99
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	86.44
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	86.26
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	86.11
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	84.57
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	84.29
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	83.52
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	82.18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	80.79

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.7e-62  Score=549.27  Aligned_cols=542  Identities=21%  Similarity=0.288  Sum_probs=424.9

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      .++.+.|+||++.|++++|+|||++||+|+.|++|+|||. +++++..+ .+|...|++++|+|+  +++|++++.|++|
T Consensus         6 ~~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l-~gh~~~V~~l~fspd--g~~las~~~d~~i   81 (577)
T 2ymu_A            6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVWGVAFSPD--GQTIASASDDKTV   81 (577)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-ECCSSCEEEEEECTT--SSEEEEEETTSCE
T ss_pred             cEEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEE-eCCCCCEEEEEECCC--CCEEEEEeCCCEE
Confidence            3456779999999999999999999999999999999994 78888888 799999999999999  5999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC---------
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH---------  159 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------  159 (732)
                      +|||+..           .++..+.+|...|.+++|+|++ ++|++++.|+.+++|+..............         
T Consensus        82 ~vWd~~~-----------~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (577)
T 2ymu_A           82 KLWNRNG-----------QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP  149 (577)
T ss_dssp             EEEETTS-----------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECT
T ss_pred             EEEECCC-----------CEEEEEECCCCCEEEEEECCCC-CEEEEEcCCCceeecccccceeeeccCCCCceeeeeeec
Confidence            9999752           3378899999999999999955 899999999999999976543211000000         


Q ss_pred             ---------cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCC
Q 004745          160 ---------QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  230 (732)
Q Consensus       160 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~  230 (732)
                               ......++....   ........+...|.++.|+|+ +.+|++++.|+.|++||.. .+.+..+       
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~w~~~-~~~~~~~-------  217 (577)
T 2ymu_A          150 DGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRN-GQLLQTL-------  217 (577)
T ss_dssp             TSSCEEEEETTSEEEEECTTS---CEEEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEECTT-SCEEEEE-------
T ss_pred             CCccceecccccceeccccce---eeeeeccCCCcceeeeeecCC-CCEEEEEcCCCEEEEEeCC-CcEEEEE-------
Confidence                     000011111111   112223346678999999999 7899999999999999964 3222221       


Q ss_pred             CccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCC
Q 004745          231 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP  310 (732)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (732)
                                   .+|.. .|.+++|+|++++|++++.|+.|++||... +...                .+.++...+.
T Consensus       218 -------------~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~----------------~~~~~~~~v~  266 (577)
T 2ymu_A          218 -------------TGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQ----------------TLTGHSSSVN  266 (577)
T ss_dssp             -------------ECCSS-CEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEE----------------EECCCSSCEE
T ss_pred             -------------ecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEE----------------EEecCCCCEE
Confidence                         34544 599999999999999999999999999653 2111                2345566778


Q ss_pred             CCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC-----CCccchhhhhhHHHHhhc
Q 004745          311 IHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI-----GPMLRHECLCIRAALLLK  385 (732)
Q Consensus       311 ~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~  385 (732)
                      +++|+|+|+.++   +++.|+.+++     |+.. +..        ...+.+|...+     +|++.  .+++++.++++
T Consensus       267 ~v~~~~d~~~l~---~~~~d~~i~~-----w~~~-~~~--------~~~~~~h~~~v~~~~~~~~~~--~l~t~~~d~~i  327 (577)
T 2ymu_A          267 GVAFRPDGQTIA---SASDDKTVKL-----WNRN-GQL--------LQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTV  327 (577)
T ss_dssp             EEEECTTSSEEE---EEETTSCEEE-----EETT-SCE--------EEEECCCSSCEEEEEECTTSS--EEEEEETTSCE
T ss_pred             EEEEcCCCCEEE---EEeCCCEEEE-----EeCC-CcE--------EEEEecCCCCeEEEEECCCCC--EEEEEeCCCeE
Confidence            888999999999   9999999999     8754 331        12345565554     77776  78888999999


Q ss_pred             cccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhcc
Q 004745          386 RKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKN  465 (732)
Q Consensus       386 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~  465 (732)
                      ++|+......       ..+...                      ...+..++++|+           ++.|++++.|+.
T Consensus       328 ~~w~~~~~~~-------~~~~~~----------------------~~~v~~~~~s~~-----------g~~l~~~~~dg~  367 (577)
T 2ymu_A          328 KLWNRNGQHL-------QTLTGH----------------------SSSVWGVAFSPD-----------GQTIASASDDKT  367 (577)
T ss_dssp             EEEETTSCEE-------EEECCC----------------------SSCEEEEEECTT-----------SSEEEEEETTSE
T ss_pred             EEEeCCCCee-------EEEeCC----------------------CCCEEEEEECCC-----------CCEEEEEeCCCE
Confidence            9998541110       000000                      001345678887           567888899999


Q ss_pred             CCCCCCCCCCCCCCCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcce
Q 004745          466 NKANDGGARSEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNV  543 (732)
Q Consensus       466 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~  543 (732)
                      +++|+       .+++++  .++..|...  +++|+||+                  +.+++++.|+.+++|+.++++..
T Consensus       368 v~~~~-------~~~~~~--~~~~~~~~~v~~~~~s~dg------------------~~l~~~~~d~~v~~~~~~~~~~~  420 (577)
T 2ymu_A          368 VKLWN-------RNGQLL--QTLTGHSSSVRGVAFSPDG------------------QTIASASDDKTVKLWNRNGQLLQ  420 (577)
T ss_dssp             EEEEE-------TTCCEE--EEEECCSSCEEEEEECTTS------------------SCEEEEETTSEEEEECTTCCEEE
T ss_pred             EEEEc-------CCCCEE--EEecCCCCCeEEEEECCCC------------------CEEEEEeCCCEEEEEeCCCCEEE
Confidence            99998       334433  244555555  78999999                  89999999999999999999999


Q ss_pred             eeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEE
Q 004745          544 RIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIW  623 (732)
Q Consensus       544 ~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iW  623 (732)
                      .+.+|...|++++|+||+++|++++.++...+|+..  .+.++.+.+|...++++.    |+||+++||+|+.|++|+||
T Consensus       421 ~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~----~spd~~~las~~~d~~i~iw  494 (577)
T 2ymu_A          421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVA----FSPDGQTIASASDDKTVKLW  494 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEE----ECTTSCEEEEEETTSEEEEE
T ss_pred             EecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCCEEEEE----EcCCCCEEEEEeCCCEEEEE
Confidence            999999999999999999999999877777779864  458889999999866655    69999999999999999999


Q ss_pred             EcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCc-----hhHHHHHHHHHHHh
Q 004745          624 EKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT-----ADVLEAMESNQRKL  698 (732)
Q Consensus       624 d~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~-----~~~~~~~~~~~~~~  698 (732)
                      | .++++++.+.+|...|++|+|+|++++|||++.|++|+|||. +++++.++.||.+++.     +|...+++...|..
T Consensus       495 ~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~  572 (577)
T 2ymu_A          495 N-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT  572 (577)
T ss_dssp             E-TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             c-CCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence            9 689999999999999999999999999999999999999995 6788889999999874     56666777777777


Q ss_pred             hhccc
Q 004745          699 SRNRE  703 (732)
Q Consensus       699 ~~~~~  703 (732)
                      .++||
T Consensus       573 i~~Wd  577 (577)
T 2ymu_A          573 VKLWN  577 (577)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            77776

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.7e-57  Score=508.49  Aligned_cols=509  Identities=14%  Similarity=0.092  Sum_probs=369.2

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      +.+..+.|.+|...|++++|+|||++||+|+.|++|+|||+.+++  ....+ .+|.+.|.+++|+|+  |++|++++.+
T Consensus        48 ~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~-~~~~~~v~~v~fs~d--g~~l~~~~~~  124 (611)
T 1nr0_A           48 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSE--SKRIAAVGEG  124 (611)
T ss_dssp             CSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTT--SCEEEEEECC
T ss_pred             CcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee-cccCCceEEEEECCC--CCEEEEEECC
Confidence            456788899999999999999999999999999999999997543  34455 789999999999999  5899988865


Q ss_pred             ----CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004745           86 ----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        86 ----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                          ++|++||...            +...+.+|...|++++|+|+++..|++++.|++|++||..+.+.          
T Consensus       125 ~~~~~~v~~wd~~~------------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~----------  182 (611)
T 1nr0_A          125 RERFGHVFLFDTGT------------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF----------  182 (611)
T ss_dssp             SSCSEEEEETTTCC------------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE----------
T ss_pred             CCceeEEEEeeCCC------------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE----------
Confidence                4788887532            25678899999999999997766899999999999999765431          


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                                     .....+|...|.+++|+|+ +.+|++|+.|++|++||+.+++.+..+..             ...
T Consensus       183 ---------------~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~~-------------~~~  233 (611)
T 1nr0_A          183 ---------------KSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFED-------------DSL  233 (611)
T ss_dssp             ---------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBC-------------TTS
T ss_pred             ---------------eeeeccccCceEEEEECCC-CCEEEEEECCCcEEEEECCCCcEeeeecc-------------ccc
Confidence                           1223457779999999999 88999999999999999988765433310             001


Q ss_pred             ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCC----------------------CCceee--
Q 004745          242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD----------------------ASKIMS--  297 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----------------------~~~~~~--  297 (732)
                      ...+|.. .|++++|+|+|++|++++.|++|++||+.+++....+.....                      .++.+.  
T Consensus       234 ~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~  312 (611)
T 1nr0_A          234 KNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  312 (611)
T ss_dssp             SSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             cccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCC
Confidence            1125655 699999999999999999999999999998654332211100                      000000  


Q ss_pred             ---eccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC-----CC
Q 004745          298 ---FTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI-----GP  369 (732)
Q Consensus       298 ---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~  369 (732)
                         ....+.+|...+.+++|+|+|+.++   +++.|+++++     |++.++....       ....+|...+     ++
T Consensus       313 ~~~~~~~~~gh~~~v~~l~~spdg~~l~---s~s~D~~v~~-----Wd~~~~~~~~-------~~~~~h~~~v~~~~~s~  377 (611)
T 1nr0_A          313 LGSIDQVRYGHNKAITALSSSADGKTLF---SADAEGHINS-----WDISTGISNR-------VFPDVHATMITGIKTTS  377 (611)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEE---EEETTSCEEE-----EETTTCCEEE-------CSSCSCSSCEEEEEECT
T ss_pred             CCCcceEEcCCCCCEEEEEEeCCCCEEE---EEeCCCcEEE-----EECCCCceee-------ecccCCcceEEEEEECC
Confidence               0112357888899999999999999   9999999999     9998776321       0012333322     33


Q ss_pred             ccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhc-------cCCC
Q 004745          370 MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQC-------LDPS  442 (732)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~p~  442 (732)
                      ++   .+++++.|.++++|+........          ....                      .....       ++|+
T Consensus       378 ~~---~l~s~s~d~~v~~w~~~~~~~~~----------~~~~----------------------~~~~~~~~~~~~~s~d  422 (611)
T 1nr0_A          378 KG---DLFTVSWDDHLKVVPAGGSGVDS----------SKAV----------------------ANKLSSQPLGLAVSAD  422 (611)
T ss_dssp             TS---CEEEEETTTEEEEECSSSSSSCT----------TSCC----------------------EEECSSCEEEEEECTT
T ss_pred             CC---cEEEEEcCCceEEeecCCccccc----------ccee----------------------eeecCCCCcEEEEeCC
Confidence            32   45666777777777743100000          0000                      00000       0011


Q ss_pred             ChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcc
Q 004745          443 NSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDF  520 (732)
Q Consensus       443 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~  520 (732)
                                 +..++.+ .+..+++|+        .+++.   ++ .+...  +++|+|||                  
T Consensus       423 -----------g~~~~~~-~~~~v~~~~--------~~~~~---~~-~~~~~v~~va~spdg------------------  460 (611)
T 1nr0_A          423 -----------GDIAVAA-CYKHIAIYS--------HGKLT---EV-PISYNSSCVALSNDK------------------  460 (611)
T ss_dssp             -----------SSCEEEE-ESSEEEEEE--------TTEEE---EE-ECSSCEEEEEECTTS------------------
T ss_pred             -----------CcEEEEE-eCceEEEEe--------CCcee---ee-ecCCCceEEEEeCCC------------------
Confidence                       0011111 223333442        11111   11 12222  68899999                  


Q ss_pred             cCCCCCCCCcccccccccCCcc--eeeccCCCCccccccCCCCCCCCCCCCCCCCCcccccccccccee--Eeeeccccc
Q 004745          521 HTSVPGDEGRDVEANFLHGSLN--VRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQR--YVGHCNVGT  596 (732)
Q Consensus       521 ~~~~s~~~d~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~gh~~~~~  596 (732)
                      +++++|+.|+.+++|++.+...  ....+|...|++++|||||++||+++.++...+|+.....++...  +.+|...+.
T Consensus       461 ~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~  540 (611)
T 1nr0_A          461 QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA  540 (611)
T ss_dssp             CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEE
T ss_pred             CEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccccee
Confidence            9999999999999999976432  233789999999999999999999988888888988764445443  455998866


Q ss_pred             eeeecccccCCCCEEEEecCCCcEEEEEcCccc-EE-EEEecC-cccEEEEeecCCCCeEEEecCCCcEEEEcCC
Q 004745          597 DIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR-LI-KMLLGD-EAVVNCVQCHPFDCVVATSGIDNTIKIWTPS  668 (732)
Q Consensus       597 ~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~-~~-~~l~gH-~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~  668 (732)
                      ++.    |||||++|||||.|++|+|||+.+++ ++ ..+.+| ...|++|+|+|++. |||+|.|++||+|++.
T Consensus       541 ~v~----fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          541 CVS----WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             EEE----ECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             EEE----ECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            665    69999999999999999999999876 44 788899 89999999999998 9999999999999973

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.2e-57  Score=510.15  Aligned_cols=496  Identities=22%  Similarity=0.299  Sum_probs=393.9

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      .+.+++++|.+|..+|++++|+||+++||+++.|++|+|||+ +++.+..+ .+|...|.+++|+|+  +++|++++.|+
T Consensus        45 ~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~-~~~~~~v~~~~~s~d--~~~l~~~~~d~  120 (577)
T 2ymu_A           45 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVRGVAFSPD--GQTIASASDDK  120 (577)
T ss_dssp             TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTS
T ss_pred             CCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEE-ECCCCCEEEEEECCC--CCEEEEEcCCC
Confidence            456788999999999999999999999999999999999995 67788888 799999999999999  59999999999


Q ss_pred             cEEEEEcCCCCCCCC------------------------------CCCCCCCceeeccccCceeEEEEecCCCcEEEEEe
Q 004745           87 EVRLFNLSRFSGRGL------------------------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  136 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~------------------------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  136 (732)
                      .+++|+.........                              .............|...|.++.++|++ .+|++++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~  199 (577)
T 2ymu_A          121 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG-QTIASAS  199 (577)
T ss_dssp             CEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTS-SCEEEEE
T ss_pred             ceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCC-CEEEEEc
Confidence            999999764211000                              000011233455678889999999955 8899999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004745          137 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  216 (732)
Q Consensus       137 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~  216 (732)
                      .|+.|++||.....                          +.....|...|.+++|+|+ +.+|++++.|+.|++||...
T Consensus       200 ~d~~v~~w~~~~~~--------------------------~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~i~~w~~~~  252 (577)
T 2ymu_A          200 DDKTVKLWNRNGQL--------------------------LQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRNG  252 (577)
T ss_dssp             TTSEEEEECTTSCE--------------------------EEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTS
T ss_pred             CCCEEEEEeCCCcE--------------------------EEEEecCCCCEEEEEECCC-CCEEEEEeCCCEEEEEeCCC
Confidence            99999999963321                          1122346668999999999 78999999999999999643


Q ss_pred             CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCcee
Q 004745          217 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIM  296 (732)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  296 (732)
                       +.+..+                    .+|.. .|++++|+|++++|++++.|+.|++||... +...            
T Consensus       253 -~~~~~~--------------------~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~~------------  297 (577)
T 2ymu_A          253 -QLLQTL--------------------TGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQ------------  297 (577)
T ss_dssp             -CEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEE------------
T ss_pred             -CEEEEE--------------------ecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cEEE------------
Confidence             222221                    44544 599999999999999999999999999654 2111            


Q ss_pred             eeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC-----CCcc
Q 004745          297 SFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI-----GPML  371 (732)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~  371 (732)
                          .+.+|...+.+++|+|++..++   +++.|+.+++     |++.....         ..+.+|...+     +|++
T Consensus       298 ----~~~~h~~~v~~~~~~~~~~~l~---t~~~d~~i~~-----w~~~~~~~---------~~~~~~~~~v~~~~~s~~g  356 (577)
T 2ymu_A          298 ----TLTGHSSSVWGVAFSPDGQTIA---SASDDKTVKL-----WNRNGQHL---------QTLTGHSSSVWGVAFSPDG  356 (577)
T ss_dssp             ----EECCCSSCEEEEEECTTSSEEE---EEETTSCEEE-----EETTSCEE---------EEECCCSSCEEEEEECTTS
T ss_pred             ----EEecCCCCeEEEEECCCCCEEE---EEeCCCeEEE-----EeCCCCee---------EEEeCCCCCEEEEEECCCC
Confidence                2345666778888999999999   9999999999     88764331         2234454443     7777


Q ss_pred             chhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHH
Q 004745          372 RHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVE  451 (732)
Q Consensus       372 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  451 (732)
                      +  .+++++.++.+++|+......       ..+..                      +...+..++|+|+         
T Consensus       357 ~--~l~~~~~dg~v~~~~~~~~~~-------~~~~~----------------------~~~~v~~~~~s~d---------  396 (577)
T 2ymu_A          357 Q--TIASASDDKTVKLWNRNGQLL-------QTLTG----------------------HSSSVRGVAFSPD---------  396 (577)
T ss_dssp             S--EEEEEETTSEEEEEETTCCEE-------EEEEC----------------------CSSCEEEEEECTT---------
T ss_pred             C--EEEEEeCCCEEEEEcCCCCEE-------EEecC----------------------CCCCeEEEEECCC---------
Confidence            6  778888899999998541100       00000                      0011455678887         


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCC
Q 004745          452 NIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEG  529 (732)
Q Consensus       452 ~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d  529 (732)
                        ++.|++++.|+.+++|+       .+++++  .++..|...  .++|+||+                  +.+++++.|
T Consensus       397 --g~~l~~~~~d~~v~~~~-------~~~~~~--~~~~~~~~~v~~~~~s~d~------------------~~l~~~~~d  447 (577)
T 2ymu_A          397 --GQTIASASDDKTVKLWN-------RNGQLL--QTLTGHSSSVWGVAFSPDD------------------QTIASASDD  447 (577)
T ss_dssp             --SSCEEEEETTSEEEEEC-------TTCCEE--EEEECCSSCEEEEEECTTS------------------SEEEEEETT
T ss_pred             --CCEEEEEeCCCEEEEEe-------CCCCEE--EEecCCCCCeEEEEECCCC------------------CEEEEEcCC
Confidence              57788999999999998       334433  244555555  78999999                  899999999


Q ss_pred             cccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCC
Q 004745          530 RDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGD  609 (732)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~  609 (732)
                      +.+++|+.+++....+.+|...|++++|+||+++||+++.++..++|+..  .++++.+.+|...++++.    |||||+
T Consensus       448 ~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~~~~~~~h~~~v~~l~----~s~dg~  521 (577)
T 2ymu_A          448 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVA----FSPDGQ  521 (577)
T ss_dssp             SEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEE----ECTTSS
T ss_pred             CEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCEEEEEeCCCCCEEEEE----EcCCCC
Confidence            99999999999999999999999999999999999999877777889854  568899999999976665    699999


Q ss_pred             EEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEc
Q 004745          610 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT  666 (732)
Q Consensus       610 ~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~  666 (732)
                      +||+|+.||+|+|||+ +++++.+|.||.+.|++|+|+|||++|+|+|.|++|++||
T Consensus       522 ~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          522 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            9999999999999995 7999999999999999999999999999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.4e-57  Score=505.00  Aligned_cols=532  Identities=13%  Similarity=0.098  Sum_probs=388.3

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      .+.+.+.+++|+|||++||+++ +++|+|||+.+++....+ .+|...|++++|+|+  |++|++|+.|++|+|||+.+.
T Consensus        16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~-~~h~~~v~~~~~spd--g~~lasg~~d~~v~lWd~~~~   91 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPS--GYYCASGDVHGNVRIWDTTQT   91 (611)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEEEESSST
T ss_pred             cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEe-cCCCCceEEEEECCC--CcEEEEEeCCCCEEEeECCCC
Confidence            4578899999999999999998 569999999999888888 799999999999999  599999999999999999753


Q ss_pred             CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC----CcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004745           97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                      ..        .....+.+|...|.+++|+|++ ++|++++.+    +.|++||....                       
T Consensus        92 ~~--------~~~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~~~~~v~~wd~~~~-----------------------  139 (611)
T 1nr0_A           92 TH--------ILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTS-----------------------  139 (611)
T ss_dssp             TC--------CEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCB-----------------------
T ss_pred             cc--------eeeEeecccCCceEEEEECCCC-CEEEEEECCCCceeEEEEeeCCCC-----------------------
Confidence            32        2245778899999999999965 788787765    46888874321                       


Q ss_pred             ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004745          173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  252 (732)
Q Consensus       173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (732)
                          .....+|...|.+++|+|++...|++|+.|++|++||..+.+.+..+                    .+|.. .|+
T Consensus       140 ----~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l--------------------~~H~~-~V~  194 (611)
T 1nr0_A          140 ----NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF--------------------GEHTK-FVH  194 (611)
T ss_dssp             ----CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE--------------------CCCSS-CEE
T ss_pred             ----cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee--------------------ccccC-ceE
Confidence                12345677899999999995557999999999999998765433222                    55666 699


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchh
Q 004745          253 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKC  332 (732)
Q Consensus       253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~  332 (732)
                      +++|+|+|++|++++.|++|++||+.+++....+..         ......+|...+.+++|+|+|+.++   +++.|++
T Consensus       195 ~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~---------~~~~~~~h~~~V~~v~~spdg~~l~---s~s~D~~  262 (611)
T 1nr0_A          195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED---------DSLKNVAHSGSVFGLTWSPDGTKIA---SASADKT  262 (611)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC---------TTSSSCSSSSCEEEEEECTTSSEEE---EEETTSE
T ss_pred             EEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecc---------ccccccccCCCEEEEEECCCCCEEE---EEeCCCe
Confidence            999999999999999999999999988653221100         0011236788899999999999999   9999999


Q ss_pred             hHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhh--HHhHHHHhcCCCccc
Q 004745          333 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMA--IRDCYNARRIDSSSF  410 (732)
Q Consensus       333 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~~  410 (732)
                      +++     |++.+++... .+.... ........+..++  ..+++++.++.+++|+......  ...+|          
T Consensus       263 v~l-----Wd~~~~~~~~-~~~~~~-~~~~~~~~~~~~~--~~l~s~s~d~~i~~~~~~~~~~~~~~~gh----------  323 (611)
T 1nr0_A          263 IKI-----WNVATLKVEK-TIPVGT-RIEDQQLGIIWTK--QALVSISANGFINFVNPELGSIDQVRYGH----------  323 (611)
T ss_dssp             EEE-----EETTTTEEEE-EEECCS-SGGGCEEEEEECS--SCEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred             EEE-----EeCCCCceee-eecCCC-CccceeEEEEEcC--CEEEEEeCCCcEEEEeCCCCCcceEEcCC----------
Confidence            999     9988765321 000000 0000000000111  2567778889999998542110  00011          


Q ss_pred             hhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccccc
Q 004745          411 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIY  490 (732)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~  490 (732)
                                          ...+..++|+|+           ++.|++++.|+++++|+...      +....+. ...
T Consensus       324 --------------------~~~v~~l~~spd-----------g~~l~s~s~D~~v~~Wd~~~------~~~~~~~-~~~  365 (611)
T 1nr0_A          324 --------------------NKAITALSSSAD-----------GKTLFSADAEGHINSWDIST------GISNRVF-PDV  365 (611)
T ss_dssp             --------------------SSCEEEEEECTT-----------SSEEEEEETTSCEEEEETTT------CCEEECS-SCS
T ss_pred             --------------------CCCEEEEEEeCC-----------CCEEEEEeCCCcEEEEECCC------Cceeeec-ccC
Confidence                                111556788997           67889999999999998432      2222110 012


Q ss_pred             cccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCc---------------------------
Q 004745          491 RSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSL---------------------------  541 (732)
Q Consensus       491 ~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~---------------------------  541 (732)
                      |...  +++|++++                   .+++++.|+.+++|++.+..                           
T Consensus       366 h~~~v~~~~~s~~~-------------------~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~  426 (611)
T 1nr0_A          366 HATMITGIKTTSKG-------------------DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA  426 (611)
T ss_dssp             CSSCEEEEEECTTS-------------------CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE
T ss_pred             CcceEEEEEECCCC-------------------cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEE
Confidence            2222  45555444                   34556666666666643211                           


Q ss_pred             ---------------ceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccc-cccceeEeeeccccceeeeccccc
Q 004745          542 ---------------NVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETV-IDMKQRYVGHCNVGTDIKQASFLG  605 (732)
Q Consensus       542 ---------------~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~gh~~~~~~i~~~~f~s  605 (732)
                                     ...+ .|...+.+++|+|||++||+++.++..++|+.... ....+. .+|...++++.    ||
T Consensus       427 ~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~----fs  500 (611)
T 1nr0_A          427 VAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA----FS  500 (611)
T ss_dssp             EEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE----EC
T ss_pred             EEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEE----EC
Confidence                           1111 25567889999999999999988888888987653 122344 78988866665    69


Q ss_pred             CCCCEEEEecCCCcEEEEEcCc-ccEEEE--EecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCC-Cc-cccCCC-
Q 004745          606 QRGDYIASGSDDGRWFIWEKQT-GRLIKM--LLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASV-PS-IVSGGA-  679 (732)
Q Consensus       606 ~dg~~lasgs~Dg~i~iWd~~t-g~~~~~--l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~-~~-~~~~gh-  679 (732)
                      |||++||+|+.|++|++||+.+ ++++..  +.+|...|++|+|+|||++|||+|.|++|+||++.++. .. ..+.|| 
T Consensus       501 pdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~  580 (611)
T 1nr0_A          501 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA  580 (611)
T ss_dssp             TTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSST
T ss_pred             CCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCc
Confidence            9999999999999999999998 777665  34599999999999999999999999999999999875 34 578899 


Q ss_pred             CCCCc-----hhHHHHHHHHHHHhhhcccc
Q 004745          680 AGPDT-----ADVLEAMESNQRKLSRNREH  704 (732)
Q Consensus       680 ~~~~~-----~~~~~~~~~~~~~~~~~~~~  704 (732)
                      .+.+.     ++.. +++...+.+.++|+.
T Consensus       581 ~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          581 MSSVNSVIWLNETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             TSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred             ccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence            77764     3444 777888888888886

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.4e-50  Score=491.52  Aligned_cols=531  Identities=15%  Similarity=0.145  Sum_probs=403.5

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF   91 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw   91 (732)
                      ...+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+ .+|...|.+++|+|+  |++|++++.|+.|++|
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~vw  684 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSD--DSYIATCSADKKVKIW  684 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEEE
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEe-ccCCCCEEEEEEecC--CCEEEEEeCCCeEEEE
Confidence            4567899999999999999999999999999999999999999999 799999999999999  5999999999999999


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC-CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  170 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  170 (732)
                      |+.++          .++..+.+|...|.+++|+|+ +..++++++.|+.|++||+.+++.                   
T Consensus       685 d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-------------------  735 (1249)
T 3sfz_A          685 DSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-------------------  735 (1249)
T ss_dssp             ETTTC----------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-------------------
T ss_pred             ECCCC----------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-------------------
Confidence            99864          337888899999999999995 336889999999999999988752                   


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCC-------------CCCcccccc
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS-------------PPPCVNYFC  237 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~  237 (732)
                            +....+|...|.+++|+|+ +.+|++++.||.|++||+++.+....+.....             ...|+. +.
T Consensus       736 ------~~~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s  807 (1249)
T 3sfz_A          736 ------RNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS-WS  807 (1249)
T ss_dssp             ------EEEECCCSSCEEEEEECSS-TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC-BC
T ss_pred             ------hheecCCCCCEEEEEEecC-CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE-EC
Confidence                  1222357779999999998 78999999999999999987654433221100             000000 00


Q ss_pred             cc-----------------------ccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCc
Q 004745          238 PM-----------------------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK  294 (732)
Q Consensus       238 ~~-----------------------~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  294 (732)
                      +.                       .....+|.. .|.+++|+|+++++++++.||.|++||+.++....          
T Consensus       808 ~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~----------  876 (1249)
T 3sfz_A          808 ADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS-TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA----------  876 (1249)
T ss_dssp             TTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS-CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEE----------
T ss_pred             CCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceee----------
Confidence            00                       000013444 59999999999999999999999999998854322          


Q ss_pred             eeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHh---------------------------------
Q 004745          295 IMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARN---------------------------------  341 (732)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~---------------------------------  341 (732)
                            .+.+|...+.+++|+|+|..++   +++.|+.+++|.....                                 
T Consensus       877 ------~~~~h~~~v~~v~~spdg~~l~---s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  947 (1249)
T 3sfz_A          877 ------DCRGHLSWVHGVMFSPDGSSFL---TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ  947 (1249)
T ss_dssp             ------EECCCSSCEEEEEECTTSSEEE---EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEE
T ss_pred             ------ecCCCccceEEEEECCCCCEEE---EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceE
Confidence                  2335666777788888888888   8888888888433220                                 


Q ss_pred             --hhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHH
Q 004745          342 --SLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEA  419 (732)
Q Consensus       342 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (732)
                        ....+......      .-......++|++.  .++.++.++.+++|+........      .+..            
T Consensus       948 ~~~~~~~~~~~~~------~~~i~~~~~sp~g~--~l~~g~~~g~i~i~d~~~~~~~~------~~~~------------ 1001 (1249)
T 3sfz_A          948 LIAGKTGQIDYLP------EAQVSCCCLSPHLE--YVAFGDEDGAIKIIELPNNRVFS------SGVG------------ 1001 (1249)
T ss_dssp             EEEESSCCEEEEC------CSCEEEEEECTTSS--EEEEEETTSCCEEEETTTTSCEE------ECCC------------
T ss_pred             EEecCcceEEEcc------cCcEEEEEEcCCCC--EEEEEcCCCCEEEEEcCCCceee------eccc------------
Confidence              11222210000      00011112355555  67777778888888854211100      0000            


Q ss_pred             HHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccccccccc--CCC
Q 004745          420 LEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEA--NSD  497 (732)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~  497 (732)
                                +...+..++|+|+           ++.+++++.|+.+++|+..      ++....   ...|...  .+.
T Consensus      1002 ----------h~~~v~~l~~s~d-----------g~~l~s~~~dg~i~vwd~~------~~~~~~---~~~~~~~v~~~~ 1051 (1249)
T 3sfz_A         1002 ----------HKKAVRHIQFTAD-----------GKTLISSSEDSVIQVWNWQ------TGDYVF---LQAHQETVKDFR 1051 (1249)
T ss_dssp             ----------CSSCCCCEEECSS-----------SSCEEEECSSSBEEEEETT------TTEEEC---CBCCSSCEEEEE
T ss_pred             ----------CCCceEEEEECCC-----------CCEEEEEcCCCEEEEEECC------CCceEE---EecCCCcEEEEE
Confidence                      0111556678887           5778889999999999843      333332   2233333  566


Q ss_pred             CCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccc-cCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 004745          498 ASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL-HGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPY  576 (732)
Q Consensus       498 ~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~  576 (732)
                      ++|++                   .+++++.|+.+++|++ +++....+.+|...|.+++|+||+++|++++.++...+|
T Consensus      1052 ~~~~~-------------------~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A         1052 LLQDS-------------------RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112 (1249)
T ss_dssp             ECSSS-------------------EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEE
T ss_pred             EcCCC-------------------cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence            77765                   4678889999999998 477888899999999999999999999999988888889


Q ss_pred             ccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEE---------ecCcccEEEEeec
Q 004745          577 QPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKML---------LGDEAVVNCVQCH  647 (732)
Q Consensus       577 ~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l---------~gH~~~V~~v~fs  647 (732)
                      +... .+.+..+.+|...++++.    |||||++||+|+.||+|++||+.+++++..+         .+|.+.|++++|+
T Consensus      1113 d~~~-~~~~~~l~~h~~~v~~~~----~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 1187 (1249)
T 3sfz_A         1113 SFDL-LSPLHELKGHNGCVRCSA----FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS 1187 (1249)
T ss_dssp             CSSS-SSCSBCCCCCSSCEEEEE----ECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEEC
T ss_pred             ECCC-cceeeeeccCCCcEEEEE----ECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEEC
Confidence            9877 778899999999877666    6999999999999999999999999988876         7899999999999


Q ss_pred             CCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCc
Q 004745          648 PFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT  684 (732)
Q Consensus       648 p~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~  684 (732)
                      |++++|++++  |+|++||+.+++.+..+.+|.+++.
T Consensus      1188 ~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~ 1222 (1249)
T 3sfz_A         1188 PDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLK 1222 (1249)
T ss_dssp             TTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCC
T ss_pred             CCCCEEEECC--CeEEEEECCCCceeeeeeccCCccc
Confidence            9999999986  8999999999999999998877663

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-49  Score=459.53  Aligned_cols=533  Identities=8%  Similarity=-0.009  Sum_probs=341.4

Q ss_pred             eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004745           15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS   94 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~   94 (732)
                      ..||...|++++|+|++++||+|+.||+|+||+..+.+....+  .|...|.+++|+| +  ++|++++.|++|++||+.
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fsp-g--~~L~S~s~D~~v~lWd~~   87 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVK-G--IYLVVINAKDTVYVLSLY   87 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEET-T--TEEEEEETTCEEEEEETT
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcC-C--CEEEEEECcCeEEEEECC
Confidence            3489999999999999999999999999999999888776655  5888999999999 3  699999999999999998


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                      ++.          ++..+. |...|++++|+|++ ++|++|+.||.|++||+.+++..             -+..  ...
T Consensus        88 ~~~----------~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~-------------~~~i--~~~  140 (902)
T 2oaj_A           88 SQK----------VLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLS-------------SFKL--DNL  140 (902)
T ss_dssp             TCS----------EEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEE-------------EEEE--CCH
T ss_pred             CCc----------EEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccc-------------ccee--ccc
Confidence            642          245554 67899999999955 89999999999999999876411             0000  000


Q ss_pred             ccc-cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004745          175 RSL-ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  253 (732)
Q Consensus       175 ~~~-~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (732)
                      ... ....+|...|.+++|+|+++..|++|+.|+.| +||+++.+.+..+.....+...-. .... ....+|.. .|++
T Consensus       141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~-~~~~-~~~~~h~~-~V~~  216 (902)
T 2oaj_A          141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGG-DFSE-KTNEKRTP-KVIQ  216 (902)
T ss_dssp             HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCS-TTCC-CTTSCBCC-CEEE
T ss_pred             cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCc-cccc-ccccccCC-CeEE
Confidence            000 23356778999999999756799999999999 999998765544422100000000 0000 00012323 6999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEECCCCCCccee-e----ec-------------CCCCceeeeccCCCCccCCCCCCccC
Q 004745          254 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR-Y----TV-------------GDASKIMSFTPTLNGLELQPPIHDFL  315 (732)
Q Consensus       254 l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (732)
                      ++|+|+|++|++++.||.|++||+++++..... .    .+             ...+..++|.+..            .
T Consensus       217 v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~------------~  284 (902)
T 2oaj_A          217 SLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN------------N  284 (902)
T ss_dssp             EEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS------------S
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC------------C
Confidence            999999999999999999999999986543221 0    01             1123333343211            1


Q ss_pred             CCc-cccccccccCcc-------------------------hhhHHHH----HHHhhhhcCCCc-hhhhhH-hHHHHhcc
Q 004745          316 QTN-IRVRGEVATGLG-------------------------KCRMLVE----IARNSLEEGKHP-YYGIEA-CNEVLEGH  363 (732)
Q Consensus       316 ~~g-~~~~~~~~~~~d-------------------------~~~~l~~----~~~~~~~~~~~~-~~~~~~-~~~~~~~~  363 (732)
                      |++ ..++   +++.+                         ....++.    ...+.+..+... ....-. ....+.++
T Consensus       285 pd~~~ll~---sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~  361 (902)
T 2oaj_A          285 PEYTSLLI---SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGC  361 (902)
T ss_dssp             TTEEEEEE---EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHT
T ss_pred             CCCCEEEE---eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCC
Confidence            222 2222   22111                         1111100    000111100000 000000 00011111


Q ss_pred             cCCCCCccchhhhhhHHHHhhccccccchhhh---HHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccC
Q 004745          364 LSGIGPMLRHECLCIRAALLLKRKWKNDAQMA---IRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLD  440 (732)
Q Consensus       364 ~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (732)
                      .+.       ..++..+.++.+++|+......   ....+..  +....                      ..+..++++
T Consensus       362 ~d~-------~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~--l~~~~----------------------~~v~~~~~s  410 (902)
T 2oaj_A          362 HNP-------GLILLILGNGEIETMLYPSGIFTDKASLFPQN--LSWLR----------------------PLATTSMAA  410 (902)
T ss_dssp             BSC-------SEEEEEETTSCEEEEETTTCCEECCGGGSCGG--GTTBT----------------------TBEEEEEEE
T ss_pred             CCc-------eeEEEEcCCCcEEEEECCCCCcccccccCCCc--ccccC----------------------CCeeEEEEE
Confidence            111       0223333466777776420000   0000000  00000                      001112222


Q ss_pred             CCChhhHHHHHHHHHHHHHHHhhcc-CCCCCCCCCCCCCCCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhh
Q 004745          441 PSNSVMAEKVENIKKHIAAAETEKN-NKANDGGARSEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVE  517 (732)
Q Consensus       441 p~~~~~~~~~~~~~~~l~~~~~d~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~  517 (732)
                      +..           ..+..+..+.. ...|                 .+.+|...  +++|+||+               
T Consensus       411 ~~~-----------~~~w~~~~~~~~~~~~-----------------~l~G~~~~v~sv~~spdg---------------  447 (902)
T 2oaj_A          411 SVP-----------NKLWLGALSAAQNKDY-----------------LLKGGVRTKRQKLPAEYG---------------  447 (902)
T ss_dssp             EEE-----------HHHHHHHHHTTBCCCC-----------------SCCCSBCCCCCCCCCSEE---------------
T ss_pred             EcC-----------HHHHHHHHhcccCCCC-----------------cccCCcCCCCcccccccC---------------
Confidence            211           11121111110 0001                 22333333  67899999               


Q ss_pred             hcccCCCCCCCCcccccccccCCcce---ee----c-----cCCCCccccccCCCCCCCCCCCCCCCCCccccccc----
Q 004745          518 VDFHTSVPGDEGRDVEANFLHGSLNV---RI----H-----RRGDSARETVDANGSSGSPSSSSQNDRIPYQPETV----  581 (732)
Q Consensus       518 ~~~~~~~s~~~d~~~~~~~~~~~~~~---~~----~-----~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~----  581 (732)
                         +++++++.|+++++|++......   .+    .     +|...|++++|||||++||+++.++..++|+..+.    
T Consensus       448 ---~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~  524 (902)
T 2oaj_A          448 ---TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYS  524 (902)
T ss_dssp             ---EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--
T ss_pred             ---cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccC
Confidence               99999999999999998543221   11    1     78889999999999999999998888888987653    


Q ss_pred             ----------------------------------------cccceeEeeeccccceeeecccccCCCCEEEEecCCCcEE
Q 004745          582 ----------------------------------------IDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWF  621 (732)
Q Consensus       582 ----------------------------------------~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~  621 (732)
                                                              ++++..+.+|...++++.    ||||| +||+|+.|++|+
T Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sva----fSpdG-~lAsgs~D~tv~  599 (902)
T 2oaj_A          525 VENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAIN----NSNIG-FVGIAYAAGSLM  599 (902)
T ss_dssp             -------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEE----ECBTS-EEEEEETTSEEE
T ss_pred             ccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEE----ecCCc-EEEEEeCCCcEE
Confidence                                                    134678899999977666    69999 999999999999


Q ss_pred             EEEcCcccEEE-----EEe-cCcccEEEEeec-----CCC---CeEEEecCCCcEEEEcC---CCCCCccccCCCC
Q 004745          622 IWEKQTGRLIK-----MLL-GDEAVVNCVQCH-----PFD---CVVATSGIDNTIKIWTP---SASVPSIVSGGAA  680 (732)
Q Consensus       622 iWd~~tg~~~~-----~l~-gH~~~V~~v~fs-----p~~---~~l~S~s~D~~i~vW~~---~~~~~~~~~~gh~  680 (732)
                      |||+++++++.     .+. ||++.|++|+|+     |||   ++|+|++.|++|++||+   .+++....+.||.
T Consensus       600 lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~  675 (902)
T 2oaj_A          600 LIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDIT  675 (902)
T ss_dssp             EEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEE
T ss_pred             EEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCce
Confidence            99999888764     343 999999999999     886   79999999999999999   7888888888874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.9e-48  Score=474.80  Aligned_cols=539  Identities=15%  Similarity=0.151  Sum_probs=384.1

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      .+.+.+..+.+|...|++++|+|+|++||+|+.|++|+|||+.+++.+..+ .+|...|.+++|+|+.++.++++|+.|+
T Consensus       645 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~  723 (1249)
T 3sfz_A          645 ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDF  723 (1249)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred             CCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence            456778889999999999999999999999999999999999999999999 7999999999999965467999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCC-------------
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP-------------  153 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-------------  153 (732)
                      .|++||+.++          .++..+.+|...|++++|+|++ ++|++++.||.|++||+.+++...             
T Consensus       724 ~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  792 (1249)
T 3sfz_A          724 FLKLWDLNQK----------ECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED  792 (1249)
T ss_dssp             CEEEEETTSS----------SEEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-----
T ss_pred             eEEEEECCCc----------chhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCC
Confidence            9999999864          3367888999999999999954 899999999999999998764210             


Q ss_pred             ---------CCCCCCc---------ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004745          154 ---------PAGSSHQ---------ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  215 (732)
Q Consensus       154 ---------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~  215 (732)
                               .......         .....+|+..++.... ....+|...|.+++|+|+ +.++++++.|+.|++||+.
T Consensus       793 ~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vwd~~  870 (1249)
T 3sfz_A          793 PPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA-EIHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNID  870 (1249)
T ss_dssp             ---CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEE-EEECSSSSCCCEEEECSS-TTEEEEECSSSCEEEEETT
T ss_pred             ccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCcee-EEcCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcC
Confidence                     0000001         1123344444433221 112356778999999999 7899999999999999999


Q ss_pred             CCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceee--------
Q 004745          216 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY--------  287 (732)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~--------  287 (732)
                      +...+..+                    .+|.. .|++++|+|+|++|++++.||.|++|++.+........        
T Consensus       871 ~~~~~~~~--------------------~~h~~-~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~  929 (1249)
T 3sfz_A          871 SRLKVADC--------------------RGHLS-WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV  929 (1249)
T ss_dssp             TTEEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEE
T ss_pred             CCceeeec--------------------CCCcc-ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEE
Confidence            87544333                    45655 69999999999999999999999999976421110000        


Q ss_pred             -ec--------C--CCCceeeecc--CCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhh-cCCCchhhh
Q 004745          288 -TV--------G--DASKIMSFTP--TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLE-EGKHPYYGI  353 (732)
Q Consensus       288 -~~--------~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~-~~~~~~~~~  353 (732)
                       ..        .  ..........  ........+.+++++|+|..++   +++.++.+.++........ .-.....  
T Consensus       930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~---~g~~~g~i~i~d~~~~~~~~~~~~h~~-- 1004 (1249)
T 3sfz_A          930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA---FGDEDGAIKIIELPNNRVFSSGVGHKK-- 1004 (1249)
T ss_dssp             EETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEE---EEETTSCCEEEETTTTSCEEECCCCSS--
T ss_pred             EcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEE---EEcCCCCEEEEEcCCCceeeecccCCC--
Confidence             00        0  0000000000  0001123455566666666666   6666666665222111110 0000000  


Q ss_pred             hHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHH
Q 004745          354 EACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFA  433 (732)
Q Consensus       354 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (732)
                             .-..-.++|+++  .+++++.|+.+++|+........       ... .                     ...
T Consensus      1005 -------~v~~l~~s~dg~--~l~s~~~dg~i~vwd~~~~~~~~-------~~~-~---------------------~~~ 1046 (1249)
T 3sfz_A         1005 -------AVRHIQFTADGK--TLISSSEDSVIQVWNWQTGDYVF-------LQA-H---------------------QET 1046 (1249)
T ss_dssp             -------CCCCEEECSSSS--CEEEECSSSBEEEEETTTTEEEC-------CBC-C---------------------SSC
T ss_pred             -------ceEEEEECCCCC--EEEEEcCCCEEEEEECCCCceEE-------Eec-C---------------------CCc
Confidence                   000112245554  56666666667777643111000       000 0                     000


Q ss_pred             HHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccccccccc--CCCCCCCCCCCCCCCCC
Q 004745          434 IAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSD  511 (732)
Q Consensus       434 ~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~  511 (732)
                      +....++|+            ..+++++.|+.+++|+..      +|++..  .+..|...  +++|+||+         
T Consensus      1047 v~~~~~~~~------------~~l~~~~~dg~v~vwd~~------~~~~~~--~~~~~~~~v~~~~~s~d~--------- 1097 (1249)
T 3sfz_A         1047 VKDFRLLQD------------SRLLSWSFDGTVKVWNVI------TGRIER--DFTCHQGTVLSCAISSDA--------- 1097 (1249)
T ss_dssp             EEEEEECSS------------SEEEEEESSSEEEEEETT------TTCCCE--EEECCSSCCCCEEECSSS---------
T ss_pred             EEEEEEcCC------------CcEEEEECCCcEEEEECC------CCceeE--EEcccCCcEEEEEECCCC---------
Confidence            333455663            335677788889998742      333222  33445444  78899999         


Q ss_pred             hhhhhhhcccCCCCCCCCccccccccc-CCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeE--
Q 004745          512 YDEEVEVDFHTSVPGDEGRDVEANFLH-GSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRY--  588 (732)
Q Consensus       512 ~~~~~~~~~~~~~s~~~d~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~--  588 (732)
                               +.+++++.|+.+++|++. +.....+.+|...|.+++|+|||++||+++.++...+|+..+ .+.+..+  
T Consensus      1098 ---------~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~-~~~~~~~~~ 1167 (1249)
T 3sfz_A         1098 ---------TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD-GQLLHSCAP 1167 (1249)
T ss_dssp             ---------SSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSS-SCCCCCCCC
T ss_pred             ---------CEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC-CceEEEecc
Confidence                     899999999999999985 677888899999999999999999999998888888899876 5555554  


Q ss_pred             -------eeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCc
Q 004745          589 -------VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNT  661 (732)
Q Consensus       589 -------~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~  661 (732)
                             .+|...++++.    |||||++|++++  |+|++||+.+|+++..+.+|...|++++|+|++.+|++++.||.
T Consensus      1168 ~~~~~~~~~~~~~v~~l~----fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~ 1241 (1249)
T 3sfz_A         1168 ISVEEGTATHGGWVTDVC----FSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGI 1241 (1249)
T ss_dssp             CC-------CCSCCCEEE----ECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCC
T ss_pred             ccccccccccCceEEEEE----ECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcE
Confidence                   67888866665    699999999996  89999999999999999999999999999999999999999999


Q ss_pred             EEEEcCC
Q 004745          662 IKIWTPS  668 (732)
Q Consensus       662 i~vW~~~  668 (732)
                      |++|++.
T Consensus      1242 v~vw~l~ 1248 (1249)
T 3sfz_A         1242 LYILQVL 1248 (1249)
T ss_dssp             EEEECCC
T ss_pred             EEEEeec
Confidence            9999974

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.8e-49  Score=442.65  Aligned_cols=521  Identities=12%  Similarity=0.096  Sum_probs=392.2

Q ss_pred             cccEeeeccCCc-eeEEEEcC--CCCEEEEEeCCCcEEEEeCCCC--------eeEEEEccCCCcCeEEEEEecCCCCCE
Q 004745           10 SQERELEGHQGC-VNAISWNS--KGSLLISGSDDTHINVWSYSSR--------KLLHSIETGHSANVFCTKFVPETSDEL   78 (732)
Q Consensus        10 ~~~~~l~~h~~~-V~~l~~s~--dg~~lasg~~dg~i~vWd~~~~--------~~~~~~~~~h~~~V~~~~~s~~~~g~~   78 (732)
                      +..+.+.+|... |++++|+|  ++++||+|+.||+|+|||+.++        +.+..+ ..|...|.+++|+|+  +++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~  130 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISDISWDFE--GRR  130 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEEEEECTT--SSE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchh-hcccccEEEEEEeCC--CCE
Confidence            678899999999 99999999  9999999999999999999754        666667 689999999999999  589


Q ss_pred             EEEEECC----CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004745           79 VVSGAGD----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  154 (732)
Q Consensus        79 l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~  154 (732)
                      |++++.+    +.|++||..            .++..+.+|...|.+++|+|++..++++++.|+.|++||+.+.+.   
T Consensus       131 l~~~~~~~~~~~~v~~~d~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~---  195 (615)
T 1pgu_A          131 LCVVGEGRDNFGVFISWDSG------------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF---  195 (615)
T ss_dssp             EEEEECCSSCSEEEEETTTC------------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE---
T ss_pred             EEEeccCCCCccEEEEEECC------------CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce---
Confidence            9999987    689999843            236788899999999999997755899999999999999877642   


Q ss_pred             CCCCCcccceEEeeccCCccccccCCCCCcc---ceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCC
Q 004745          155 AGSSHQECRNILLDLRCGAKRSLADPPKQTL---SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  231 (732)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~  231 (732)
                                            +.....|..   .|.+++|+|+++++|++++.|+.|++||+++++.+..+..      
T Consensus       196 ----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------  247 (615)
T 1pgu_A          196 ----------------------SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED------  247 (615)
T ss_dssp             ----------------------EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB------
T ss_pred             ----------------------eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecc------
Confidence                                  111223555   8999999998567999999999999999998765443310      


Q ss_pred             ccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCC
Q 004745          232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI  311 (732)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (732)
                            .    ..+|.. .|.+++|+ ++++|++++.||.|++||+.+++....+..+.            ......+..
T Consensus       248 ------~----~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------------~~~~~~~~~  303 (615)
T 1pgu_A          248 ------D----QEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK------------QQLGNQQVG  303 (615)
T ss_dssp             ------T----TBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT------------TCGGGCEEE
T ss_pred             ------c----ccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC------------CcccCceeE
Confidence                  0    003444 69999999 99999999999999999999865433222211            112223344


Q ss_pred             CccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCC-CccchhhhhhHHHHhhcccccc
Q 004745          312 HDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG-PMLRHECLCIRAALLLKRKWKN  390 (732)
Q Consensus       312 ~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~w~~  390 (732)
                      +.+. ++..++   +++.++.+.+     |++..+...        ..+.+|...+. -.. +. +++++.|+.+++|+.
T Consensus       304 ~~~~-~~~~l~---~~~~~g~i~~-----~d~~~~~~~--------~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~  364 (615)
T 1pgu_A          304 VVAT-GNGRII---SLSLDGTLNF-----YELGHDEVL--------KTISGHNKGITALTV-NP-LISGSYDGRIMEWSS  364 (615)
T ss_dssp             EEEE-ETTEEE---EEETTSCEEE-----EETTEEEEE--------EEECCCSSCEEEEET-TT-TEEEETTSCEEETTT
T ss_pred             EEeC-CCCeEE---EEECCCCEEE-----EECCCCcEE--------EEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEc
Confidence            4443 778888   8999999998     888765532        22334444331 011 11 677778888888885


Q ss_pred             chhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCC
Q 004745          391 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKAND  470 (732)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  470 (732)
                      ....   ..+         .                     ..+..+++.+            +..+++++.|+.+++|+
T Consensus       365 ~~~~---~~~---------~---------------------~~v~~~~~~~------------~~~l~~~~~d~~i~~~~  399 (615)
T 1pgu_A          365 SSMH---QDH---------S---------------------NLIVSLDNSK------------AQEYSSISWDDTLKVNG  399 (615)
T ss_dssp             TEEE---CCC---------C---------------------SCEEEEECCS------------TTCCEEEETTTEEEETT
T ss_pred             hhhc---Ccc---------c---------------------CceEEEEECC------------CcEEEEEeCCCCEEEEE
Confidence            4000   000         0                     0133445533            45677888888888887


Q ss_pred             CCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccc-cCCcceeeccCC
Q 004745          471 GGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL-HGSLNVRIHRRG  549 (732)
Q Consensus       471 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~-~~~~~~~~~~~~  549 (732)
                      ...      +      ... .....++++|++                  ..++++ .++.+++|.. +++....+ .+.
T Consensus       400 ~~~------~------~~~-~~~~~~~~s~~~------------------~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~  446 (615)
T 1pgu_A          400 ITK------H------EFG-SQPKVASANNDG------------------FTAVLT-NDDDLLILQSFTGDIIKSV-RLN  446 (615)
T ss_dssp             EEE------E------ECS-SCEEEEEECSSS------------------EEEEEE-TTSEEEEEETTTCCEEEEE-ECS
T ss_pred             ccc------C------ccc-CCceEEEEcCCC------------------CEEEEe-CCCceEEEeccCCceeeec-ccC
Confidence            211      0      000 011256677777                  666666 6677888887 45555444 478


Q ss_pred             CCccccccCCCCCCCCCCCC-CCCCCccccccccccc-eeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCc
Q 004745          550 DSARETVDANGSSGSPSSSS-QNDRIPYQPETVIDMK-QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT  627 (732)
Q Consensus       550 ~~v~~~~~s~d~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~t  627 (732)
                      ..+.+++|+  +++|++++. ++...+|+... .+.. ..+.+|...++++.    |+|||++||+|+.||.|++||+.+
T Consensus       447 ~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~~v~~~~----~s~~g~~l~~~~~dg~i~iw~~~~  519 (615)
T 1pgu_A          447 SPGSAVSLS--QNYVAVGLEEGNTIQVFKLSD-LEVSFDLKTPLRAKPSYIS----ISPSETYIAAGDVMGKILLYDLQS  519 (615)
T ss_dssp             SCEEEEEEC--SSEEEEEETTTSCEEEEETTE-EEEEEECSSCCSSCEEEEE----ECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CCceEEEEc--CCEEEEeecCCCeEEEEECCC-ccccccccCCccCceEEEE----ECCCCCEEEEcCCCCeEEEeeCCC
Confidence            889999999  889999987 77777798877 3333 77789998866665    699999999999999999999999


Q ss_pred             ccEEEEEec-CcccEEEEeecC----------CCCeEEEecCCCcEEEEcCCCC-CCccccCCCCCCCc-----hhHHHH
Q 004745          628 GRLIKMLLG-DEAVVNCVQCHP----------FDCVVATSGIDNTIKIWTPSAS-VPSIVSGGAAGPDT-----ADVLEA  690 (732)
Q Consensus       628 g~~~~~l~g-H~~~V~~v~fsp----------~~~~l~S~s~D~~i~vW~~~~~-~~~~~~~gh~~~~~-----~~~~~~  690 (732)
                      ++++..+.+ |...|++++|+|          ++++||+++.|++|+||++.++ +++..+.||.+++.     ++.. +
T Consensus       520 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l  598 (615)
T 1pgu_A          520 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-L  598 (615)
T ss_dssp             TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-E
T ss_pred             CcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-e
Confidence            999999999 999999999999          9999999999999999999998 78889999998874     4555 7


Q ss_pred             HHHHHHHhhhccccc
Q 004745          691 MESNQRKLSRNREHS  705 (732)
Q Consensus       691 ~~~~~~~~~~~~~~~  705 (732)
                      +....+...++|+..
T Consensus       599 ~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          599 VSSGADACIKRWNVV  613 (615)
T ss_dssp             EEEETTSCEEEEEEC
T ss_pred             EEecCCceEEEEeee
Confidence            777777788888764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-44  Score=384.02  Aligned_cols=190  Identities=17%  Similarity=0.297  Sum_probs=163.7

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      .....+.+|.++|++++|+|++++|++|+.|++|+|||+.+++.+..+ .+|...|.+++|+|+  +++|++|+.|++|+
T Consensus        99 ~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~--~~~l~sgs~D~~i~  175 (410)
T 1vyh_C           99 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS--GKLLASCSADMTIK  175 (410)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCCC
T ss_pred             CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCC--CCEEEEEeCCCeEE
Confidence            345678999999999999999999999999999999999999999988 799999999999998  58999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  169 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  169 (732)
                      +||+.+.          .++..+.+|...|.+++|+|+ +++|++++.|+.|++||++++..                  
T Consensus       176 iwd~~~~----------~~~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~------------------  226 (410)
T 1vyh_C          176 LWDFQGF----------ECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYC------------------  226 (410)
T ss_dssp             EEETTSS----------CEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCE------------------
T ss_pred             EEeCCCC----------ceeEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcE------------------
Confidence            9999863          346788899999999999995 48999999999999999988752                  


Q ss_pred             cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004745          170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                             +....+|...|.++.|+|+ +.+|++|+.|+.|++||+++.+....+                    .+|.. 
T Consensus       227 -------~~~~~~h~~~v~~~~~~~~-g~~l~s~s~D~~v~vwd~~~~~~~~~~--------------------~~h~~-  277 (410)
T 1vyh_C          227 -------VKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAEL--------------------REHRH-  277 (410)
T ss_dssp             -------EEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEE--------------------CCCSS-
T ss_pred             -------EEEEeCCCccEEEEEECCC-CCEEEEEcCCCeEEEEECCCCceeeEe--------------------cCCCc-
Confidence                   1122346668999999998 789999999999999999887544332                    44554 


Q ss_pred             cEEEEEEcCCC
Q 004745          250 HLTHVTFSPNG  260 (732)
Q Consensus       250 ~i~~l~~sp~g  260 (732)
                      .|.+++|+|++
T Consensus       278 ~v~~~~~~~~~  288 (410)
T 1vyh_C          278 VVECISWAPES  288 (410)
T ss_dssp             CEEEEEECCSC
T ss_pred             eEEEEEEcCcc
Confidence            59999999973

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.2e-43  Score=364.63  Aligned_cols=213  Identities=23%  Similarity=0.335  Sum_probs=183.7

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      ++..++|++|.++|++++|+|++++|++|+.||+|+|||+.+++.+..+ ..|...|.+++|+|+  +++|++|+.|+.|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~s~~~d~~v  121 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPS--GNYVACGGLDNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECTT--SSEEEEEETTCEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECCC--CCEEEEEeCCCeE
Confidence            4566789999999999999999999999999999999999999999888 789999999999999  5999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      ++|++.+.....      .....+.+|...|.++.|++++  .+++++.|+.|++||+.+++.                 
T Consensus       122 ~iw~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~-----------------  176 (340)
T 1got_B          122 SIYNLKTREGNV------RVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQ-----------------  176 (340)
T ss_dssp             EEEETTTCSBSC------EEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEE-----------------
T ss_pred             EEEECccCCCcc------eeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcE-----------------
Confidence            999998643221      2356778999999999999843  588999999999999987652                 


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                              +....+|...|.+++|+|+ +.+|++|+.|+.|++||+++...+..+                    .+|..
T Consensus       177 --------~~~~~~h~~~v~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~~~~~--------------------~~h~~  227 (340)
T 1got_B          177 --------TTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTF--------------------TGHES  227 (340)
T ss_dssp             --------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSEEEEE--------------------CCCSS
T ss_pred             --------EEEEcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCeeEEEE--------------------cCCcC
Confidence                    1223456778999999998 789999999999999999987544333                    44555


Q ss_pred             ccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                       .|++++|+|++++|++++.||.|++||+++
T Consensus       228 -~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~  257 (340)
T 1got_B          228 -DINAICFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             -CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             -CEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence             599999999999999999999999999987

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.1e-45  Score=414.08  Aligned_cols=481  Identities=14%  Similarity=0.092  Sum_probs=359.8

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCC----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      .+....+.+|..+|.+++|+|++++|++++.+    +.|++||  .++.+..+ .+|...|.+++|+|++ ..++++++.
T Consensus       106 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~-~~~l~~~~~  181 (615)
T 1pgu_A          106 VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEV-SGHSQRINACHLKQSR-PMRSMTVGD  181 (615)
T ss_dssp             EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEEC-CSCSSCEEEEEECSSS-SCEEEEEET
T ss_pred             ccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceee-ecCCccEEEEEECCCC-CcEEEEEeC
Confidence            46677888999999999999999999999987    6888888  66777777 7999999999999994 238999999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeeccccC---ceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      |+.|++||+.+.          .++..+.+|..   .|++++|+|+++++|++++.||.|++||+.+++..         
T Consensus       182 d~~v~vwd~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------  242 (615)
T 1pgu_A          182 DGSVVFYQGPPF----------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL---------  242 (615)
T ss_dssp             TTEEEEEETTTB----------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE---------
T ss_pred             CCcEEEEeCCCc----------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe---------
Confidence            999999998863          33677888999   99999999963689999999999999999887621         


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                           ..+.       .....|...|.+++|+ + +.+|++++.|+.|++||+++.+.+..+...               
T Consensus       243 -----~~~~-------~~~~~~~~~v~~~~~~-~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---------------  293 (615)
T 1pgu_A          243 -----KYIE-------DDQEPVQGGIFALSWL-D-SQKFATVGADATIRVWDVTTSKCVQKWTLD---------------  293 (615)
T ss_dssp             -----EECC-------BTTBCCCSCEEEEEES-S-SSEEEEEETTSEEEEEETTTTEEEEEEECC---------------
T ss_pred             -----EEec-------ccccccCCceEEEEEc-C-CCEEEEEcCCCcEEEEECCCCcEEEEEcCC---------------
Confidence                 0000       0001466789999999 6 889999999999999999987654433211               


Q ss_pred             ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccc
Q 004745          242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRV  321 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  321 (732)
                        .......+.++.|. +++++++++.||.|++||+.+++....+                .+|...+.+++| |+   +
T Consensus       294 --~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~----------------~~~~~~v~~~~~-~~---l  350 (615)
T 1pgu_A          294 --KQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTI----------------SGHNKGITALTV-NP---L  350 (615)
T ss_dssp             --TTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEE----------------CCCSSCEEEEET-TT---T
T ss_pred             --CCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEE----------------eCCCCCEEEEEe-cC---c
Confidence              01112258888886 8899999999999999999874433222                344555666666 66   5


Q ss_pred             ccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC----CCccchhhhhhHHHHhhccccccchhhhHH
Q 004745          322 RGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI----GPMLRHECLCIRAALLLKRKWKNDAQMAIR  397 (732)
Q Consensus       322 ~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  397 (732)
                      +   +++.|+.+++     |++.   .+.          .+|...+    -+++.  .+++++.++.+++|+........
T Consensus       351 ~---~~~~dg~i~~-----w~~~---~~~----------~~~~~~v~~~~~~~~~--~l~~~~~d~~i~~~~~~~~~~~~  407 (615)
T 1pgu_A          351 I---SGSYDGRIME-----WSSS---SMH----------QDHSNLIVSLDNSKAQ--EYSSISWDDTLKVNGITKHEFGS  407 (615)
T ss_dssp             E---EEETTSCEEE-----TTTT---EEE----------CCCCSCEEEEECCSTT--CCEEEETTTEEEETTEEEEECSS
T ss_pred             E---EECCCCeEEE-----EEch---hhc----------CcccCceEEEEECCCc--EEEEEeCCCCEEEEEcccCcccC
Confidence            5   8888888888     7654   110          1122222    11121  67788888999999865211100


Q ss_pred             hHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 004745          398 DCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEP  477 (732)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~  477 (732)
                                                         .....+++|+.           ..++++ .++.+++|+.      
T Consensus       408 -----------------------------------~~~~~~~s~~~-----------~~~~~~-~~~~~~~~~~------  434 (615)
T 1pgu_A          408 -----------------------------------QPKVASANNDG-----------FTAVLT-NDDDLLILQS------  434 (615)
T ss_dssp             -----------------------------------CEEEEEECSSS-----------EEEEEE-TTSEEEEEET------
T ss_pred             -----------------------------------CceEEEEcCCC-----------CEEEEe-CCCceEEEec------
Confidence                                               01234556652           222222 4556666652      


Q ss_pred             CCCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCC-CcccccccccCCcc--eeeccCCCCc
Q 004745          478 RTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDE-GRDVEANFLHGSLN--VRIHRRGDSA  552 (732)
Q Consensus       478 ~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~-d~~~~~~~~~~~~~--~~~~~~~~~v  552 (732)
                      .+++.+.  .+ .+...  .++++  +                  +.+++++. |+.+++|++.....  ..+..|...|
T Consensus       435 ~~~~~~~--~~-~~~~~~~~~~~~--~------------------~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v  491 (615)
T 1pgu_A          435 FTGDIIK--SV-RLNSPGSAVSLS--Q------------------NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP  491 (615)
T ss_dssp             TTCCEEE--EE-ECSSCEEEEEEC--S------------------SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred             cCCceee--ec-ccCCCceEEEEc--C------------------CEEEEeecCCCeEEEEECCCccccccccCCccCce
Confidence            1222221  11 11111  34444  4                  78888998 99999999965443  6778899999


Q ss_pred             cccccCCCCCCCCCCCCCCCCCccccccccccceeEee-eccccceeeecccccC----------CCCEEEEecCCCcEE
Q 004745          553 RETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVG-HCNVGTDIKQASFLGQ----------RGDYIASGSDDGRWF  621 (732)
Q Consensus       553 ~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~~~~i~~~~f~s~----------dg~~lasgs~Dg~i~  621 (732)
                      .+++|+||+++|++++.++...+|+... .+.+..+.+ |...++++.    |+|          ++++||+|+.||+|+
T Consensus       492 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v~~~~----~sp~~~~~~~~~~~~~~l~~~~~dg~i~  566 (615)
T 1pgu_A          492 SYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSKINAIS----WKPAEKGANEEEIEEDLVATGSLDTNIF  566 (615)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSCEEEEE----ECCCC------CCSCCEEEEEETTSCEE
T ss_pred             EEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCceeEEE----EcCccccccccccCCCEEEEEcCCCcEE
Confidence            9999999999999998888888899877 678888888 998876665    699          999999999999999


Q ss_pred             EEEcCcc-cEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCC
Q 004745          622 IWEKQTG-RLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA  669 (732)
Q Consensus       622 iWd~~tg-~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~  669 (732)
                      |||+.++ +++..+.+|.+.|++|+|+|+++ |+|+|.|++|++|++.+
T Consensus       567 iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          567 IYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             EEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            9999998 89999999999999999999999 99999999999999875

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.2e-43  Score=355.84  Aligned_cols=214  Identities=14%  Similarity=0.264  Sum_probs=183.1

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      +++..++|++|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+ ..|..+|.+++|+|+  +++|++|+.|++
T Consensus         2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~s~s~d~~   78 (304)
T 2ynn_A            2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFR   78 (304)
T ss_dssp             CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred             cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCC--CCEEEEECCCCE
Confidence            46778899999999999999999999999999999999999999999988 789999999999999  599999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      |++||+.++          .++..+.+|...|++++|+|++ .+|++|+.|++|++||++++..+               
T Consensus        79 i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~---------------  132 (304)
T 2ynn_A           79 IRVFNYNTG----------EKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL---------------  132 (304)
T ss_dssp             EEEEETTTC----------CEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEE---------------
T ss_pred             EEEEECCCC----------cEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcch---------------
Confidence            999999864          3367889999999999999955 89999999999999999875311               


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                               .....+|...|.+++|+|.++.+|++|+.|++|++||+++..+...+.                   .++.
T Consensus       133 ---------~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-------------------~~~~  184 (304)
T 2ynn_A          133 ---------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------------------TGQE  184 (304)
T ss_dssp             ---------EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-------------------CCCT
T ss_pred             ---------hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec-------------------cCCc
Confidence                     112235677899999999658899999999999999998765432221                   2222


Q ss_pred             cccEEEEEEcC--CCCEEEEEecCCeEEEEECCC
Q 004745          248 SLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       248 ~~~i~~l~~sp--~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      . .+..+.|+|  ++++|++++.|+.|++||+++
T Consensus       185 ~-~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          185 R-GVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (304)
T ss_dssp             T-CEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred             C-cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence            2 588899987  778999999999999999876

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.9e-43  Score=361.12  Aligned_cols=209  Identities=18%  Similarity=0.285  Sum_probs=174.1

Q ss_pred             cccEeeeccCCceeEEEEcCC----CCEEEEEeCCCcEEEEeCCCCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745           10 SQERELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~d----g~~lasg~~dg~i~vWd~~~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      ...+.+++|.+.|++++|+|+    +.+|+||+.|++|+|||+.+++.  ...+ .+|...|.+++|+|+  +.++++++
T Consensus        23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-~gh~~~v~~~~~~~~--~~~l~s~s   99 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-EGHQLGVVSVDISHT--LPIAASSS   99 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECSS--SSEEEEEE
T ss_pred             heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee-ccCCCCEEEEEECCC--CCEEEEEe
Confidence            344667899999999999984    67999999999999999987754  3345 799999999999999  48999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      .|++|++||+.++          .++..+..|...+.+++|+|++ ++|++++.||.|++||+++++..           
T Consensus       100 ~D~~i~lWd~~~~----------~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~-----------  157 (321)
T 3ow8_A          100 LDAHIRLWDLENG----------KQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKE-----------  157 (321)
T ss_dssp             TTSEEEEEETTTT----------EEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEE-----------
T ss_pred             CCCcEEEEECCCC----------CEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCcee-----------
Confidence            9999999999864          2367778888999999999955 89999999999999999877521           


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                                    .....+...|.+++|+|+ +++|++|+.|+.|++||+++++.+..+                    
T Consensus       158 --------------~~~~~~~~~v~~~~~spd-g~~lasg~~dg~i~iwd~~~~~~~~~~--------------------  202 (321)
T 3ow8_A          158 --------------YSLDTRGKFILSIAYSPD-GKYLASGAIDGIINIFDIATGKLLHTL--------------------  202 (321)
T ss_dssp             --------------EEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------------------
T ss_pred             --------------EEecCCCceEEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEE--------------------
Confidence                          111123447899999999 889999999999999999987654433                    


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .+|.. +|++++|+|++++|++++.|+.|++||+++
T Consensus       203 ~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~  237 (321)
T 3ow8_A          203 EGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQH  237 (321)
T ss_dssp             CCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred             cccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence            44554 599999999999999999999999999876

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.2e-43  Score=371.78  Aligned_cols=226  Identities=24%  Similarity=0.376  Sum_probs=187.7

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      .+...++|+||.+.|++++|+|++++|+||+.|++|+|||+.+++.+..+ ..|...|.+++|+|+  |++|++|+.|+.
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~~--g~~las~~~d~~  131 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPN--GQSVACGGLDSA  131 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECTT--SSEEEECCSSSC
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECCC--CCEEEEeeCCCc
Confidence            34566889999999999999999999999999999999999999999988 799999999999999  599999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      |++||+......   .........+.+|...|.++.|.|+++..|++|+.|++|++||+++++..            ..+
T Consensus       132 v~iw~~~~~~~~---~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~------------~~~  196 (380)
T 3iz6_a          132 CSIFNLSSQADR---DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI------------SIF  196 (380)
T ss_dssp             CEEEECCCCSSC---CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE------------EEE
T ss_pred             EEEEECCCCccc---cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE------------EEe
Confidence            999999753211   11123356788999999999999987788999999999999999887622            000


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC-CCCcccccCCCCCCccccccccccccCCC
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                              ......+|...|.+++|++.++++|++|+.|++|++||++.. +.+..+                    .+|
T Consensus       197 --------~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~--------------------~~h  248 (380)
T 3iz6_a          197 --------GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY--------------------HGH  248 (380)
T ss_dssp             --------CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE--------------------CCC
T ss_pred             --------ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE--------------------CCc
Confidence                    011234577799999998855889999999999999999843 222222                    556


Q ss_pred             ccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      .. .|++++|+|++++|++++.||+|++||+.++
T Consensus       249 ~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~  281 (380)
T 3iz6_a          249 EG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTG  281 (380)
T ss_dssp             SS-CCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred             CC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence            65 5999999999999999999999999999884

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.1e-42  Score=357.98  Aligned_cols=217  Identities=19%  Similarity=0.287  Sum_probs=183.6

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      ++..++|++|.+.|++++|+|++++||||+.|++|+|||..+++....+ ..|...|.+++|+|+  |.+|++++.|+.+
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~~~~v~~~~~sp~--g~~lasg~~d~~i  130 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-TMPCTWVMACAYAPS--GCAIACGGLDNKC  130 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCEEEECTT--SSEEEEESTTSEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-ecCCCCEEEEEECCC--CCEEEEeeCCCCE
Confidence            3467889999999999999999999999999999999999999988888 689999999999999  5999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      ++|++.......    .......+.+|...|.+++|+|++ ..|++++.|++|++||+++++.                 
T Consensus       131 ~v~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~-----------------  188 (354)
T 2pbi_B          131 SVYPLTFDKNEN----MAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQL-----------------  188 (354)
T ss_dssp             EEEECCCCTTCC----SGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCE-----------------
T ss_pred             EEEEEecccccc----ccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeE-----------------
Confidence            999987532111    113356777899999999999954 8899999999999999988762                 


Q ss_pred             ccCCccccccCCCCCccceEEEEecCC-CCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                              +....+|...|.+++|+|+ ++++|++|+.||.|++||+++++.+..+                    .+|.
T Consensus       189 --------~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~--------------------~~h~  240 (354)
T 2pbi_B          189 --------LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF--------------------ETHE  240 (354)
T ss_dssp             --------EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE--------------------CCCS
T ss_pred             --------EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------cCCC
Confidence                    1122356678999999885 2679999999999999999987644333                    4455


Q ss_pred             cccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      . .|++++|+|++++|++++.|++|++||++.
T Consensus       241 ~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~  271 (354)
T 2pbi_B          241 S-DVNSVRYYPSGDAFASGSDDATCRLYDLRA  271 (354)
T ss_dssp             S-CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             C-CeEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            5 599999999999999999999999999987

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-42  Score=359.09  Aligned_cols=220  Identities=17%  Similarity=0.246  Sum_probs=181.0

Q ss_pred             hhccccEeeeccCC-ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE--EEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745            7 RRLSQERELEGHQG-CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus         7 ~~~~~~~~l~~h~~-~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~--~~~~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      ..+++++++.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++...  ..+..+|...|.+++|+|+  |++|++|+
T Consensus         3 ~~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~s   80 (345)
T 3fm0_A            3 DSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC--GNYLASAS   80 (345)
T ss_dssp             -CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT--SSEEEEEE
T ss_pred             ccEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC--CCEEEEEE
Confidence            35678889999998 9999999999999999999999999999887643  3344689999999999999  59999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      .|++|++|++.....        .++..+.+|...|.+++|+|+ +++|++++.|+.|++||+......           
T Consensus        81 ~D~~v~iw~~~~~~~--------~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~-----------  140 (345)
T 3fm0_A           81 FDATTCIWKKNQDDF--------ECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEY-----------  140 (345)
T ss_dssp             TTSCEEEEEECCC-E--------EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECTTSCE-----------
T ss_pred             CCCcEEEEEccCCCe--------EEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEECCCCCCe-----------
Confidence            999999999986432        236788999999999999995 489999999999999999875421           


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                                 ..+.....|...|.+++|+|+ +.+|++|+.|+.|++||++..+..           |...+       
T Consensus       141 -----------~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~-----------~~~~~-------  190 (345)
T 3fm0_A          141 -----------ECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWV-----------CCATL-------  190 (345)
T ss_dssp             -----------EEEEEECCCCSCEEEEEECSS-SSCEEEEETTSCEEEEEEETTEEE-----------EEEEE-------
T ss_pred             -----------EEEEEecCcCCCeEEEEECCC-CCEEEEEeCCCcEEEEEecCCCEE-----------EEEEe-------
Confidence                       011223356678999999999 789999999999999998765311           11111       


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .+|.. .|++++|+|+|++|++++.|++|+||+...
T Consensus       191 ~~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~  225 (345)
T 3fm0_A          191 EGHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQYL  225 (345)
T ss_dssp             CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             cCCCC-ceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence            45655 699999999999999999999999999754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-43  Score=411.53  Aligned_cols=551  Identities=10%  Similarity=0.000  Sum_probs=330.9

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      .|..+|++++|+| |++|++++.|++|+|||+.+++++..+ . |...|++++|+|+  +++|++|+.||+|++||+++.
T Consensus        56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~-~-~~~~V~~v~~sp~--g~~l~sgs~dg~V~lwd~~~~  130 (902)
T 2oaj_A           56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV-F-VPGKITSIDTDAS--LDWMLIGLQNGSMIVYDIDRD  130 (902)
T ss_dssp             SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE-E-CSSCEEEEECCTT--CSEEEEEETTSCEEEEETTTT
T ss_pred             CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE-c-CCCCEEEEEECCC--CCEEEEEcCCCcEEEEECCCC
Confidence            4889999999999 889999999999999999999999888 3 7789999999999  599999999999999999864


Q ss_pred             CCCCCCCCCCCCc-eeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004745           97 SGRGLDDNAITPS-ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  175 (732)
Q Consensus        97 ~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (732)
                      ............. ..+.+|...|++++|+|++...+++|+.||.| +||+++++..... ..+...     . ..+...
T Consensus       131 ~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~-~~~~~~-----g-~~~~~~  202 (902)
T 2oaj_A          131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSF-IYELPP-----F-APGGDF  202 (902)
T ss_dssp             EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEE-CCCBCT-----T-CCCSTT
T ss_pred             ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEE-ecccCC-----c-CCCccc
Confidence            3110000000000 23467999999999999766889999999999 9999886522000 000000     0 000000


Q ss_pred             cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc--cccC-CCCCCccccccccccccCCCccccEE
Q 004745          176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS--CQKR-MSPPPCVNYFCPMHLSEHGRSSLHLT  252 (732)
Q Consensus       176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (732)
                      .......|...|.+++|+|+ +.+|++|+.|+.|++||+++++.+..  +... ...+.   ...+  .....+.. +|+
T Consensus       203 ~~~~~~~h~~~V~~v~fspd-g~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~---~~~~--~~~~~~~~-~V~  275 (902)
T 2oaj_A          203 SEKTNEKRTPKVIQSLYHPN-SLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ---PDYI--RDSSTNAA-KIS  275 (902)
T ss_dssp             CCCTTSCBCCCEEEEEECTT-SSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCC---TTCC--CCCSSCCC-EEE
T ss_pred             ccccccccCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCC---CcCC--CCCccccC-Cee
Confidence            00112234568999999999 88999999999999999998765432  1000 00000   0000  00001122 588


Q ss_pred             EEEEc----CCC-CEEEEEecC-----CeEEEEECCC------------------CCCcceee-ecCCCCceeeeccC--
Q 004745          253 HVTFS----PNG-EEVLLSYSG-----EHVYLMDVNH------------------AGGRAMRY-TVGDASKIMSFTPT--  301 (732)
Q Consensus       253 ~l~~s----p~g-~~l~~~~~d-----g~v~iwd~~~------------------~~~~~~~~-~~~~~~~~~~~~~~--  301 (732)
                      +++|+    |++ .+|++|+.+     ..+.+|++..                  ++....+. .+...+..+.+.+.  
T Consensus       276 ~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~s  355 (902)
T 2oaj_A          276 KVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQS  355 (902)
T ss_dssp             EEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSC
T ss_pred             EEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCC
Confidence            88885    443 455666554     2677777421                  01010000 01111111111110  


Q ss_pred             --CCCc-----------cCCCCCCccCCCcccccc-------------cc--ccCcchhhHHHHHHHhhhhcCCCchhhh
Q 004745          302 --LNGL-----------ELQPPIHDFLQTNIRVRG-------------EV--ATGLGKCRMLVEIARNSLEEGKHPYYGI  353 (732)
Q Consensus       302 --~~~~-----------~~~~~~~~~~~~g~~~~~-------------~~--~~~~d~~~~l~~~~~~~~~~~~~~~~~~  353 (732)
                        +.+.           ...+....+ ++|.....             .+  .+..+....+|....-.-..+...    
T Consensus       356 p~~~g~~d~~~l~~~s~dg~l~~~~~-~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~----  430 (902)
T 2oaj_A          356 PYFAGCHNPGLILLILGNGEIETMLY-PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYL----  430 (902)
T ss_dssp             SHHHHTBSCSEEEEEETTSCEEEEET-TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCS----
T ss_pred             CCcCCCCCceeEEEEcCCCcEEEEEC-CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCc----
Confidence              0000           000000000 01100000             00  000011122222221000011110    


Q ss_pred             hHhHHHHhcccC-----CCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHH
Q 004745          354 EACNEVLEGHLS-----GIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE  428 (732)
Q Consensus       354 ~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (732)
                            +.||..     .++|+++  ++++++.|+++|+|+.....                                  
T Consensus       431 ------l~G~~~~v~sv~~spdg~--~laSgs~DgtVrlWd~~~g~----------------------------------  468 (902)
T 2oaj_A          431 ------LKGGVRTKRQKLPAEYGT--AFITGHSNGSVRIYDASHGD----------------------------------  468 (902)
T ss_dssp             ------CCCSBCCCCCCCCCSEEE--EEEEEETTSEEEEEESSCCT----------------------------------
T ss_pred             ------ccCCcCCCCcccccccCc--EEEEecCCCcEEEEECCCcc----------------------------------
Confidence                  112211     1245544  55566666666666533100                                  


Q ss_pred             HHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccc----cccccccc--CCCCCCCC
Q 004745          429 ALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLS----DIIYRSEA--NSDASQDG  502 (732)
Q Consensus       429 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~--~~~~s~d~  502 (732)
                                                                      ..+...+.+.    ....|...  +++|+|||
T Consensus       469 ------------------------------------------------~~~~~~~~~~l~~~~~~~h~~~V~svafspdg  500 (902)
T 2oaj_A          469 ------------------------------------------------IQDNASFEVNLSRTLNKAKELAVDKISFAAET  500 (902)
T ss_dssp             ------------------------------------------------TTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT
T ss_pred             ------------------------------------------------ccCCceEEeechhhcCCCCCCceeEEEecCCC
Confidence                                                            0000000000    00022222  68899999


Q ss_pred             CCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCC------------------------------------------
Q 004745          503 PRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS------------------------------------------  540 (732)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~------------------------------------------  540 (732)
                                        +++|+|+.|+++++|++.+.                                          
T Consensus       501 ------------------~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (902)
T 2oaj_A          501 ------------------LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVR  562 (902)
T ss_dssp             ------------------TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCS
T ss_pred             ------------------CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCC
Confidence                              99999999999999998543                                          


Q ss_pred             ----cceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccc-----eeEe-eeccccceeeeccccc-----
Q 004745          541 ----LNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMK-----QRYV-GHCNVGTDIKQASFLG-----  605 (732)
Q Consensus       541 ----~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~-gh~~~~~~i~~~~f~s-----  605 (732)
                          ....+.+|...|++++||||| +||+++.++..++|+..+. ..+     +.+. ||...+++|.    ||     
T Consensus       563 ~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~-~~~~~~~~~~~~~gh~~~V~sv~----Fs~~~~~  636 (902)
T 2oaj_A          563 QGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP-AIIYMENIREISGAQSACVTCIE----FVIMEYG  636 (902)
T ss_dssp             EEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT-EEEEEEEGGGTCSSCCCCEEEEE----EEEEECT
T ss_pred             CccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC-eEEEEeehhHhccccccceEEEE----EEEEecC
Confidence                145678899999999999999 9999988888888997663 222     3454 8999977666    69     


Q ss_pred             CCC---CEEEEecCCCcEEEEEc---CcccEEEEEecCc-----ccEEEEe-ec----------------------CCCC
Q 004745          606 QRG---DYIASGSDDGRWFIWEK---QTGRLIKMLLGDE-----AVVNCVQ-CH----------------------PFDC  651 (732)
Q Consensus       606 ~dg---~~lasgs~Dg~i~iWd~---~tg~~~~~l~gH~-----~~V~~v~-fs----------------------p~~~  651 (732)
                      |||   ++||+|+.|++|++||+   .+|+++.+|.+|.     +.|.+++ |+                      +++.
T Consensus       637 ~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  716 (902)
T 2oaj_A          637 DDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGI  716 (902)
T ss_dssp             TSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEE
T ss_pred             CCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeE
Confidence            885   89999999999999999   8999999999985     6788887 76                      5555


Q ss_pred             eEEEecCCCcEEEEcCCCCCCccccCCCCCCC--------------chhHHHHHHHHHHHhhhccccccch
Q 004745          652 VVATSGIDNTIKIWTPSASVPSIVSGGAAGPD--------------TADVLEAMESNQRKLSRNREHSLSY  708 (732)
Q Consensus       652 ~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~  708 (732)
                      +||++  |..||||++.++++.....+|.-.+              ..+...++...++...++|+.+.-.
T Consensus       717 ~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~  785 (902)
T 2oaj_A          717 VLITG--FDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFK  785 (902)
T ss_dssp             EEEEC--SSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEe--ccceEEEeCccccceeeEcccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchH
Confidence            66655  7889999999999887666654211              1223455556677778888876433

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.5e-42  Score=359.86  Aligned_cols=213  Identities=18%  Similarity=0.188  Sum_probs=160.2

Q ss_pred             EeeeccCCceeEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeeEEEE---ccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745           13 RELEGHQGCVNAISWNSKGSLLISGSD------DTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~dg~~lasg~~------dg~i~vWd~~~~~~~~~~---~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      ....+|...|++++|+|||++||+|+.      |+.|++|+..++.....+   ..+|...|++++|+|+   ..+++++
T Consensus        36 ~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d---~~~l~~s  112 (357)
T 4g56_B           36 TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE---KGILVAS  112 (357)
T ss_dssp             ----CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT---TEEEEEE
T ss_pred             CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC---CCEEEEE
Confidence            345679999999999999999999997      778999998776533221   1368899999999998   4677788


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      .||+|+|||+.+++...      .......+|...|++++|+|++ ++|++++.|+.|++||+++++.            
T Consensus       113 ~dg~v~lWd~~~~~~~~------~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~------------  173 (357)
T 4g56_B          113 DSGAVELWEILEKESLL------VNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAV------------  173 (357)
T ss_dssp             TTSCEEEC--------C------CCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEE------------
T ss_pred             CCCEEEEeeccccceeE------EEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE------------
Confidence            99999999998754322      1123455899999999999954 8999999999999999988652            


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                                   +.....|...|++++|+|++..++++++.|+.|++||+++.+++..+..                  
T Consensus       174 -------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~------------------  222 (357)
T 4g56_B          174 -------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF------------------  222 (357)
T ss_dssp             -------------EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC------------------
T ss_pred             -------------EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee------------------
Confidence                         2223456778999999998667899999999999999998765443210                  


Q ss_pred             CCCccccEEEEEEcCC-CCEEEEEecCCeEEEEECCC
Q 004745          244 HGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~-g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ..+. ..+++++|+|+ +.+|++|+.|+.|++||+++
T Consensus       223 ~~~~-~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~  258 (357)
T 4g56_B          223 CASD-TIPTSVTWHPEKDDTFACGDETGNVSLVNIKN  258 (357)
T ss_dssp             TTCC-SCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred             cccc-ccccchhhhhcccceEEEeecccceeEEECCC
Confidence            1222 25999999997 46888999999999999876

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.8e-41  Score=345.86  Aligned_cols=212  Identities=21%  Similarity=0.337  Sum_probs=183.3

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      .+.+..++.+|.++|++++|+|++++|++|+.|+.|+||++.+++....+ .+|...|.+++|+|+  +++|++|+.|+.
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~d~~   88 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSD--SNLLVSASDDKT   88 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcCC--CCEEEEECCCCE
Confidence            34567789999999999999999999999999999999999999998888 799999999999999  599999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      |++||+++.          .++..+.+|...|.+++|+|+ +++|++++.|+.|++||+++++.                
T Consensus        89 i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~----------------  141 (312)
T 4ery_A           89 LKIWDVSSG----------KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKC----------------  141 (312)
T ss_dssp             EEEEETTTC----------CEEEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCCE----------------
T ss_pred             EEEEECCCC----------cEEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCEE----------------
Confidence            999999864          336788899999999999995 48999999999999999987652                


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                               +.....|...|.+++|+|+ +.+|++++.|+.|++||+++.+.+..+                    ..+.
T Consensus       142 ---------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~--------------------~~~~  191 (312)
T 4ery_A          142 ---------LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTL--------------------IDDD  191 (312)
T ss_dssp             ---------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEE--------------------CCSS
T ss_pred             ---------EEEecCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeEE--------------------eccC
Confidence                     1122345668999999998 789999999999999999987544332                    1122


Q ss_pred             cccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ..++..++|+|++++|++++.||.|++||+.+
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  223 (312)
T 4ery_A          192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSK  223 (312)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            23599999999999999999999999999887

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.2e-42  Score=356.05  Aligned_cols=208  Identities=18%  Similarity=0.171  Sum_probs=161.6

Q ss_pred             eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC------------CeeEEEEccCCCcCeEEEEEecCCCCCEEEEE
Q 004745           15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------RKLLHSIETGHSANVFCTKFVPETSDELVVSG   82 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~------------~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~   82 (732)
                      ...|...|.+++|+|||++|++++ |+++++||...            +.....  ..|...|.+++|+|+   ..|++|
T Consensus        26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~d---~~l~~~   99 (344)
T 4gqb_B           26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG--VQTEAGVADLTWVGE---RGILVA   99 (344)
T ss_dssp             CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE--EEESSCEEEEEEETT---TEEEEE
T ss_pred             cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee--eccCCCEEEEEEeCC---CeEEEE
Confidence            346788899999999999999887 67888887321            111111  246678999999998   589999


Q ss_pred             ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004745           83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  162 (732)
Q Consensus        83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  162 (732)
                      +.||+|+|||+.+++...      .....+.+|...|++++|+|++ ++|++|+.|++|++||+++++.           
T Consensus       100 s~dg~v~lWd~~~~~~~~------~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~-----------  161 (344)
T 4gqb_B          100 SDSGAVELWELDENETLI------VSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVV-----------  161 (344)
T ss_dssp             ETTSEEEEEEECTTSSCE------EEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE-----------
T ss_pred             ECCCEEEEEeccCCCcee------EeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE-----------
Confidence            999999999998753211      1123455899999999999954 8999999999999999988752           


Q ss_pred             ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004745          163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  242 (732)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (732)
                                    +....+|...|.+++|+|++..+|++|+.|++|++||+++.+....+..                 
T Consensus       162 --------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----------------  210 (344)
T 4gqb_B          162 --------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-----------------  210 (344)
T ss_dssp             --------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------------
T ss_pred             --------------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec-----------------
Confidence                          2233467789999999999667899999999999999998865544311                 


Q ss_pred             cCCCccccEEEEEEcCC-CCEEEEEecCCeEEEEECCC
Q 004745          243 EHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       243 ~~~~~~~~i~~l~~sp~-g~~l~~~~~dg~v~iwd~~~  279 (732)
                       ..+ ...+++++|+|+ +++|++|+.||.|++||+++
T Consensus       211 -~~~-~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~  246 (344)
T 4gqb_B          211 -SAP-GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS  246 (344)
T ss_dssp             -----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred             -cee-eccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence             112 225899999995 57889999999999999876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.5e-43  Score=410.92  Aligned_cols=478  Identities=13%  Similarity=0.103  Sum_probs=345.0

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      +++..+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+ .+|...|.+++|+|+  +++|++++.||.
T Consensus         2 ~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~~dg~   78 (814)
T 3mkq_A            2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFR   78 (814)
T ss_dssp             CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred             CcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeCC--CCEEEEEeCCCe
Confidence            46778899999999999999999999999999999999999999999999 799999999999999  589999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      |++||+.++          ..+..+.+|...|++++|+|++ .+|++++.||.|++||+.++...               
T Consensus        79 i~vw~~~~~----------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~---------------  132 (814)
T 3mkq_A           79 IRVFNYNTG----------EKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL---------------  132 (814)
T ss_dssp             EEEEETTTC----------CEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEE---------------
T ss_pred             EEEEECCCC----------cEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceE---------------
Confidence            999999864          2367888999999999999955 88999999999999999775311               


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                               ......|...|.+++|+|+++..|++++.||.|++||+.+......+                    ..+.
T Consensus       133 ---------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------------------~~~~  183 (814)
T 3mkq_A          133 ---------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL--------------------TTGQ  183 (814)
T ss_dssp             ---------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE--------------------ECCC
T ss_pred             ---------EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE--------------------ecCC
Confidence                     11122456689999999943789999999999999999876544333                    2222


Q ss_pred             cccEEEEEEcC--CCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccccccc
Q 004745          248 SLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEV  325 (732)
Q Consensus       248 ~~~i~~l~~sp--~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  325 (732)
                      ...+..++|+|  ++++|++++.||.|++||+.+++....                +.++...+.+++|+|+|..++   
T Consensus       184 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~----------------~~~~~~~v~~~~~~~~~~~l~---  244 (814)
T 3mkq_A          184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT----------------LEGHMSNVSFAVFHPTLPIII---  244 (814)
T ss_dssp             TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEE----------------EECCSSCEEEEEECSSSSEEE---
T ss_pred             CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE----------------EcCCCCCEEEEEEcCCCCEEE---
Confidence            23589999999  999999999999999999988543222                234455677788899999999   


Q ss_pred             ccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC-----CCccchhhhhhHHHHhhccccccchhhhHHhHH
Q 004745          326 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI-----GPMLRHECLCIRAALLLKRKWKNDAQMAIRDCY  400 (732)
Q Consensus       326 ~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  400 (732)
                      +++.|+.+++     |++.++...        ..+..+...+     +|++...+++++. +..+..|+....       
T Consensus       245 ~~~~dg~v~v-----wd~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------  303 (814)
T 3mkq_A          245 SGSEDGTLKI-----WNSSTYKVE--------KTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGND-------  303 (814)
T ss_dssp             EEETTSCEEE-----EETTTCSEE--------EEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCC-------
T ss_pred             EEeCCCeEEE-----EECCCCcEE--------EEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCC-------
Confidence            9999999999     988876632        1122222222     5555422233332 333444442200       


Q ss_pred             HHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCC-CCC--CCCCCCC
Q 004745          401 NARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNK-AND--GGARSEP  477 (732)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~-~~~--~~~~~~~  477 (732)
                                                       .....++|++           ..+++++.+.... ++.  ....+..
T Consensus       304 ---------------------------------~~~~~~~~~g-----------~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (814)
T 3mkq_A          304 ---------------------------------EPTLSLDPVG-----------KLVWSGGKNAAASDIFTAVIRGNEEV  339 (814)
T ss_dssp             ---------------------------------SCCEEECSSS-----------EEEEECCTTSCTTCEEEEECCSCCCC
T ss_pred             ---------------------------------CceeEECCCC-----------CEEEECcccccceeeeeeeccccccc
Confidence                                             0112344442           2222221111100 000  0000111


Q ss_pred             CCCccccccc--cccccc--cCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCCcc
Q 004745          478 RTGRVLSLSD--IIYRSE--ANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSAR  553 (732)
Q Consensus       478 ~~g~~~~~~~--~~~~~~--~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~  553 (732)
                      ..+.......  ...+..  ..++|+|+|                  +.+++++ ++.+.+|++.....    .+...+.
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg------------------~~la~~~-~~~~~i~~~~~~~~----~~~~~i~  396 (814)
T 3mkq_A          340 EQDEPLSLQTKELGSVDVFPQSLAHSPNG------------------RFVTVVG-DGEYVIYTALAWRN----KAFGKCQ  396 (814)
T ss_dssp             CSSSCBCCCCEEECCCSSCCSEEEECTTS------------------SEEEEEE-TTEEEEEETTTTEE----EEEEECS
T ss_pred             ccCccceeeeecCCCCccCCceeEECCCC------------------CEEEEec-CCEEEEEECccccc----cCCCceE
Confidence            2222221111  111111  168889999                  7888877 78889998643222    2345688


Q ss_pred             ccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCC---CEEEEecCCCcEEEEEcCcccE
Q 004745          554 ETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRG---DYIASGSDDGRWFIWEKQTGRL  630 (732)
Q Consensus       554 ~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg---~~lasgs~Dg~i~iWd~~tg~~  630 (732)
                      +++|+||++++|+++.++...+|         +.+.+|...+.++.    |+|||   .+|++++.|++|++||+.++++
T Consensus       397 ~~~~spdg~~la~~~~~g~v~l~---------~~~~~~~~~v~~~~----~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~  463 (814)
T 3mkq_A          397 DFVWGPDSNSYALIDETGQIKYY---------KNFKEVTSWSVPMH----SAIDRLFSGALLGVKSDGFVYFFDWDNGTL  463 (814)
T ss_dssp             EEEECTTSSCEEEECTTCCEEEE---------ETTEECTTCCCCCS----SCCCEEECSSSEEEEETTEEEEECTTTCCE
T ss_pred             EEEEeCCCCeEEEEeCCCcEEEE---------ECCCCccceEEcCC----cCccceecceEEEEecCCEEEEEECCcCcE
Confidence            99999999999999766665667         34567877755555    69999   6999999999999999999999


Q ss_pred             EEEEecCcccEEEEeecCCCCeEEEe------cCCCcEEEEc
Q 004745          631 IKMLLGDEAVVNCVQCHPFDCVVATS------GIDNTIKIWT  666 (732)
Q Consensus       631 ~~~l~gH~~~V~~v~fsp~~~~l~S~------s~D~~i~vW~  666 (732)
                      +..+.+|..   .++|+|+|++|+++      +.|..+.+|-
T Consensus       464 ~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~  502 (814)
T 3mkq_A          464 VRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF  502 (814)
T ss_dssp             EEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred             EEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence            999999986   99999999999999      7777666764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.7e-40  Score=348.77  Aligned_cols=208  Identities=20%  Similarity=0.320  Sum_probs=167.6

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC------------------cCeEEEEEecCCCCCE
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS------------------ANVFCTKFVPETSDEL   78 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~------------------~~V~~~~~s~~~~g~~   78 (732)
                      +|...|++++|+|||++||+|+ +++++||++.+++.+..+ ..|.                  ..|.+++|+|+  |++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--g~~  137 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GKF  137 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECTT--SSE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECCC--CCE
Confidence            6999999999999999999986 689999999999988877 4443                  24999999999  599


Q ss_pred             EEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004745           79 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  158 (732)
Q Consensus        79 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  158 (732)
                      |++|+.|++|++||+.+.          ..+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++..      
T Consensus       138 l~s~~~d~~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~------  200 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENR----------KIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCS------  200 (393)
T ss_dssp             EEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE------
T ss_pred             EEEEcCCCeEEEEECCCC----------cEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeE------
Confidence            999999999999999863          2367889999999999999955 89999999999999999876521      


Q ss_pred             CcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccc
Q 004745          159 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  238 (732)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  238 (732)
                              ..+            .+...+.+++|+|.++.+|++|+.|+.|++||+++++.+..+...            
T Consensus       201 --------~~~------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~------------  248 (393)
T 1erj_A          201 --------LTL------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE------------  248 (393)
T ss_dssp             --------EEE------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------
T ss_pred             --------EEE------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc------------
Confidence                    000            122368999999955899999999999999999987654333110            


Q ss_pred             cccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          239 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       239 ~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                       .....+|.. .|++++|+|+|++|++++.|+.|++||+.+
T Consensus       249 -~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          249 -NESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             -----CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             -ccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence             001134554 699999999999999999999999999987

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.4e-40  Score=336.93  Aligned_cols=212  Identities=18%  Similarity=0.288  Sum_probs=177.9

Q ss_pred             hhccccEeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCC-----CeeEEEEccCCCcCeEEEEEecCCCCCEEE
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSS-----RKLLHSIETGHSANVFCTKFVPETSDELVV   80 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~-----~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~   80 (732)
                      +.+.+..+|+||.++|++++|+|++ ++|++|+.|++|++||+..     +..+..+ .+|...|.+++|+|+  |.+|+
T Consensus         5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~d--g~~l~   81 (319)
T 3frx_A            5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTAD--GAYAL   81 (319)
T ss_dssp             EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECTT--SSEEE
T ss_pred             eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECCC--CCEEE
Confidence            3456778999999999999999965 8999999999999999864     3345666 799999999999999  59999


Q ss_pred             EEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004745           81 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        81 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  160 (732)
                      +|+.|++|++||+.++          +++..+.+|...|.+++|+|+ +.+|++++.|+.|++||++...          
T Consensus        82 s~s~D~~v~~wd~~~~----------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~vwd~~~~~----------  140 (319)
T 3frx_A           82 SASWDKTLRLWDVATG----------ETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQC----------  140 (319)
T ss_dssp             EEETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECTT-SCEEEEEETTSCEEEEETTSCE----------
T ss_pred             EEeCCCEEEEEECCCC----------CeeEEEccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe----------
Confidence            9999999999999864          336788999999999999995 4899999999999999986432          


Q ss_pred             ccceEEeeccCCccccccCCCCCccceEEEEecCC-----CCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccc
Q 004745          161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-----RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  235 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  235 (732)
                                      +....+|...|.++.|.|.     ++..|++++.|+.|++||+++.+....+            
T Consensus       141 ----------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~------------  192 (319)
T 3frx_A          141 ----------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF------------  192 (319)
T ss_dssp             ----------------EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE------------
T ss_pred             ----------------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee------------
Confidence                            1122356678999999985     2458999999999999999876433222            


Q ss_pred             ccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                              .+|.. .|++++|+|+|++|++++.||.|++||+.+
T Consensus       193 --------~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~  227 (319)
T 3frx_A          193 --------IGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAA  227 (319)
T ss_dssp             --------CCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             --------cCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence                    45655 699999999999999999999999999877

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-40  Score=337.66  Aligned_cols=224  Identities=14%  Similarity=0.166  Sum_probs=171.8

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eeEEEEccC-CCcCeEEEEEecCCCCCEEEEEE
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETG-HSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~--~~~~~~~~~-h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      ++++++++|++|.++|++++|+|+  +||+|+.|++|+|||+.++  +.+..+..+ |...|.+++|+|+  +++|++|+
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~las~s   77 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH--TSLLAAGS   77 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT--SSEEEEEE
T ss_pred             cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC--CCEEEEEe
Confidence            567788999999999999999987  9999999999999999875  445555234 9999999999999  58999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      .|++|++||+.......   ....++..+.+|...|.+++|+|+ +++|++|+.|++|++||++.....           
T Consensus        78 ~D~~v~iw~~~~~~~~~---~~~~~~~~~~~h~~~V~~v~~sp~-g~~las~s~D~~v~iwd~~~~~~~-----------  142 (330)
T 2hes_X           78 FDSTVSIWAKEESADRT---FEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKSVWIWETDESGEE-----------  142 (330)
T ss_dssp             TTSCEEEEEC----------CCCEEEEEEC----CEEEEEECTT-SCEEEEEETTSCEEEEECCTTCCC-----------
T ss_pred             CCCcEEEEEcccCcCcc---ccceeEEEEcCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEeccCCCCC-----------
Confidence            99999999996421100   011346778899999999999995 589999999999999999543210           


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                                ...+....+|...|.+++|+|+ +.+|++|+.|++|++||+.+...           .|+..+       
T Consensus       143 ----------~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~~-----------~~~~~~-------  193 (330)
T 2hes_X          143 ----------YECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDDW-----------ECVAVL-------  193 (330)
T ss_dssp             ----------CEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEE-----------EEEEEE-------
T ss_pred             ----------eEEEEEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCe-----------eEEEEc-------
Confidence                      0011223457778999999998 78999999999999999875410           111222       


Q ss_pred             CCCccccEEEEEEcCC--CCEEEEEecCCeEEEEECCC
Q 004745          244 HGRSSLHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~--g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .+|.. .|.+++|+|+  +.+|++++.|++|++||+..
T Consensus       194 ~~h~~-~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          194 NGHEG-TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             CCCSS-CEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             cCCCC-cEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            55665 6999999998  77899999999999999876

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.1e-39  Score=338.58  Aligned_cols=214  Identities=20%  Similarity=0.286  Sum_probs=175.5

Q ss_pred             hhccccEeeeccCCceeEEEE-----cC-CCCEEEEEeCCCcEEEEeCCCC-------eeEEEEccCCCcCeEEEEEecC
Q 004745            7 RRLSQERELEGHQGCVNAISW-----NS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPE   73 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~-----s~-dg~~lasg~~dg~i~vWd~~~~-------~~~~~~~~~h~~~V~~~~~s~~   73 (732)
                      ..+++..+|+||.+.|++++|     ++ ++++||||+.|++|+|||+.+.       .....+ .+|...|.+++|+|+
T Consensus         9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~   87 (343)
T 2xzm_R            9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQE   87 (343)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEECSS
T ss_pred             eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEECCC
Confidence            455678899999999999999     76 9999999999999999998753       345556 799999999999998


Q ss_pred             CCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004745           74 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  153 (732)
Q Consensus        74 ~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~  153 (732)
                        +.++++|+.|++|++||++++          .++..+.+|...|.+++|+|++ ++|++++.|+.|++||+.....  
T Consensus        88 --~~~l~s~s~D~~v~lwd~~~~----------~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~--  152 (343)
T 2xzm_R           88 --NCFAISSSWDKTLRLWDLRTG----------TTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECK--  152 (343)
T ss_dssp             --TTEEEEEETTSEEEEEETTSS----------CEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEE--
T ss_pred             --CCEEEEEcCCCcEEEEECCCC----------cEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCce--
Confidence              589999999999999999864          2367889999999999999955 8999999999999999863220  


Q ss_pred             CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC---------CCEEEEEeCCCeEEEEECCCCCCCcccc
Q 004745          154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---------PHLLLVGGSDAFARLYDRRMLPPLTSCQ  224 (732)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---------~~~l~tg~~dg~v~iwd~~~~~~~~~~~  224 (732)
                                           ........|...|.+++|+|++         +.+|++++.|+.|++||... +....  
T Consensus       153 ---------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~--  208 (343)
T 2xzm_R          153 ---------------------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYT--  208 (343)
T ss_dssp             ---------------------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEEEE--
T ss_pred             ---------------------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ceeEE--
Confidence                                 0112223566789999999983         26899999999999999432 11111  


Q ss_pred             cCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          225 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                                 +       .+|.. .|++++|+|+|++|++++.||.|++||+..
T Consensus       209 -----------~-------~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          209 -----------F-------KAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             -----------E-------ECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             -----------E-------cCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence                       1       34554 599999999999999999999999999855

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-39  Score=348.94  Aligned_cols=339  Identities=10%  Similarity=0.092  Sum_probs=259.3

Q ss_pred             ccCCceeEEEEcCCCC-EEEEEeCCCcEEEEeC----CCCe------eEEEEcc---------CCCcCeEEEEEecCCCC
Q 004745           17 GHQGCVNAISWNSKGS-LLISGSDDTHINVWSY----SSRK------LLHSIET---------GHSANVFCTKFVPETSD   76 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~----~~~~------~~~~~~~---------~h~~~V~~~~~s~~~~g   76 (732)
                      .|.++|++++|+|+++ +||+|+.|+.|+|||+    .+++      ....+..         +|...|++++|+|+  +
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~  120 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD--G  120 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT--S
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC--C
Confidence            4669999999999999 9999999999999999    8887      4544421         16889999999998  5


Q ss_pred             CEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004745           77 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  156 (732)
Q Consensus        77 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  156 (732)
                      ++|++++.||.|++||..   +        ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++...   
T Consensus       121 ~~l~~~~~dg~i~i~~~~---~--------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~---  185 (425)
T 1r5m_A          121 NSIVTGVENGELRLWNKT---G--------ALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQ---  185 (425)
T ss_dssp             SEEEEEETTSCEEEEETT---S--------CEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEE---
T ss_pred             CEEEEEeCCCeEEEEeCC---C--------CeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEE---
Confidence            999999999999999943   2        3367888999999999999954 899999999999999998765321   


Q ss_pred             CCCcccceEEeeccCCcc--ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccc
Q 004745          157 SSHQECRNILLDLRCGAK--RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  234 (732)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  234 (732)
                               .+.......  ............+.++.|+|+  ..+++++.|+.|++||+++.+.+..+           
T Consensus       186 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~-----------  243 (425)
T 1r5m_A          186 ---------HFELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTGKL-----------  243 (425)
T ss_dssp             ---------EECCC---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSEEE-----------
T ss_pred             ---------EeeccccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceeeee-----------
Confidence                     000000000  000000111223788899986  37999999999999999987654433           


Q ss_pred             cccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCcc
Q 004745          235 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDF  314 (732)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (732)
                               .+|.. .|++++|+|++++|++++.||.|++||+.+++...                              
T Consensus       244 ---------~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~------------------------------  283 (425)
T 1r5m_A          244 ---------IGHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN------------------------------  283 (425)
T ss_dssp             ---------CCCSS-CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE------------------------------
T ss_pred             ---------ccCCC-ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce------------------------------
Confidence                     33444 59999999999999999999999999988732111                              


Q ss_pred             CCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhh
Q 004745          315 LQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQM  394 (732)
Q Consensus       315 ~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~  394 (732)
                                                                                                      
T Consensus       284 --------------------------------------------------------------------------------  283 (425)
T 1r5m_A          284 --------------------------------------------------------------------------------  283 (425)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 004745          395 AIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGAR  474 (732)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  474 (732)
                                                                                                      
T Consensus       284 --------------------------------------------------------------------------------  283 (425)
T 1r5m_A          284 --------------------------------------------------------------------------------  283 (425)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCCccc
Q 004745          475 SEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARE  554 (732)
Q Consensus       475 ~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~  554 (732)
                                                                                           .+..|...|.+
T Consensus       284 ---------------------------------------------------------------------~~~~~~~~i~~  294 (425)
T 1r5m_A          284 ---------------------------------------------------------------------CFYGHSQSIVS  294 (425)
T ss_dssp             ---------------------------------------------------------------------EECCCSSCEEE
T ss_pred             ---------------------------------------------------------------------EecCCCccEEE
Confidence                                                                                 01112334556


Q ss_pred             cccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCccc-----
Q 004745          555 TVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR-----  629 (732)
Q Consensus       555 ~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~-----  629 (732)
                      ++|+|++ ++++++.++...+|+... .+.+..+.+|...+.++.    |+|++++||+|+.||.|++||+.+++     
T Consensus       295 ~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~----~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~  368 (425)
T 1r5m_A          295 ASWVGDD-KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVPIFAGR----ISQDGQKYAVAFMDGQVNVYDLKKLNSKSRS  368 (425)
T ss_dssp             EEEETTT-EEEEEETTSEEEEEETTT-TEEEEEEECTTCCEEEEE----ECTTSSEEEEEETTSCEEEEECHHHHC----
T ss_pred             EEECCCC-EEEEEeCCCcEEEEECCC-CcEeEecccCCccEEEEE----EcCCCCEEEEEECCCeEEEEECCCCccceee
Confidence            6677777 666665555556677665 678888999988866665    69999999999999999999999999     


Q ss_pred             ---------------EEEEEecCcc--cEEEEeecCCCCeEEEecCCCcEEEEcCCC
Q 004745          630 ---------------LIKMLLGDEA--VVNCVQCHPFDCVVATSGIDNTIKIWTPSA  669 (732)
Q Consensus       630 ---------------~~~~l~gH~~--~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~  669 (732)
                                     ++..+.+|..  .|++++|+|++++|++++.||+|++|+++.
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          369 LYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG  425 (425)
T ss_dssp             ----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred             eecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence                           9999999977  999999999999999999999999999863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-41  Score=357.76  Aligned_cols=349  Identities=15%  Similarity=0.186  Sum_probs=274.0

Q ss_pred             cCCceeEEEEcCCCC-EEEEE----------eCCCcEEEEeCCCCe---eEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745           18 HQGCVNAISWNSKGS-LLISG----------SDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus        18 h~~~V~~l~~s~dg~-~lasg----------~~dg~i~vWd~~~~~---~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      +...|.+++|+|+++ +|++|          +.|+.|+|||+.+++   .+..+  .|...|.+++|+|+  +.+|++++
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~--~~~l~~~~   86 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHN--NKIIAGAL   86 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSS--SSCEEEEE
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCC--CCeEEEEc
Confidence            346799999999987 99999          899999999999876   33333  68899999999999  58999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      .||.|++||+......      ..++..+.+|...|++++|+|+++++|++++.|+.|++||+.+.+......       
T Consensus        87 ~dg~v~vw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------  153 (416)
T 2pm9_A           87 DNGSLELYSTNEANNA------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY-------  153 (416)
T ss_dssp             SSSCEEEECCSSTTSC------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-------
T ss_pred             cCCeEEEeeccccccc------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc-------
Confidence            9999999999862211      124678889999999999999757999999999999999998875210000       


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                               ....+.....|...|.+++|+|+++.+|++++.|+.|++||+++.+.+..+...              ...
T Consensus       154 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--------------~~~  210 (416)
T 2pm9_A          154 ---------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT--------------SPN  210 (416)
T ss_dssp             ---------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCC--------------CCS
T ss_pred             ---------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecc--------------ccc
Confidence                     000111234566789999999987789999999999999999987654433110              000


Q ss_pred             CCCccccEEEEEEcCCC-CEEEEEecCC---eEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcc
Q 004745          244 HGRSSLHLTHVTFSPNG-EEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNI  319 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g-~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  319 (732)
                      .+|.. .|++++|+|++ .+|++++.|+   .|++||++++....                                   
T Consensus       211 ~~~~~-~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~-----------------------------------  254 (416)
T 2pm9_A          211 SGIKQ-QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL-----------------------------------  254 (416)
T ss_dssp             SCCCC-CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS-----------------------------------
T ss_pred             cccCC-ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc-----------------------------------
Confidence            12233 69999999997 6899999998   99999998732100                                   


Q ss_pred             ccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhH
Q 004745          320 RVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDC  399 (732)
Q Consensus       320 ~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  399 (732)
                                                                                                      
T Consensus       255 --------------------------------------------------------------------------------  254 (416)
T 2pm9_A          255 --------------------------------------------------------------------------------  254 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 004745          400 YNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRT  479 (732)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~  479 (732)
                                                                                                      
T Consensus       255 --------------------------------------------------------------------------------  254 (416)
T 2pm9_A          255 --------------------------------------------------------------------------------  254 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeec-cCCCCccccccC
Q 004745          480 GRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIH-RRGDSARETVDA  558 (732)
Q Consensus       480 g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s  558 (732)
                                                                                     ..+. +|...|.+++|+
T Consensus       255 ---------------------------------------------------------------~~~~~~~~~~v~~~~~s  271 (416)
T 2pm9_A          255 ---------------------------------------------------------------QTLNQGHQKGILSLDWC  271 (416)
T ss_dssp             ---------------------------------------------------------------BCCCSCCSSCEEEEEEC
T ss_pred             ---------------------------------------------------------------EEeecCccCceeEEEeC
Confidence                                                                           0011 245567788999


Q ss_pred             C-CCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCC-CEEEEecCCCcEEEEEcCcccEEEEEec
Q 004745          559 N-GSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRG-DYIASGSDDGRWFIWEKQTGRLIKMLLG  636 (732)
Q Consensus       559 ~-d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg-~~lasgs~Dg~i~iWd~~tg~~~~~l~g  636 (732)
                      | ++.+|++++.++...+|+... .+.+..+.+|...++++.    |+|++ ++|++++.|++|+|||+.+++.......
T Consensus       272 ~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~----~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~  346 (416)
T 2pm9_A          272 HQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWCFKTK----FAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQE  346 (416)
T ss_dssp             SSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCCCCEE----ECTTCTTEEEECCSSSEEEEEESCCCCCSSCC--
T ss_pred             CCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCceEEEE----ECCCCCCEEEEEecCCcEEEEEccCCCCCccccc
Confidence            9 889999997777777899877 788899999999877666    69999 8999999999999999998765433322


Q ss_pred             -----------------------------------CcccEEEEeecCCCCeEEEecCCCcEEEEcCCCC
Q 004745          637 -----------------------------------DEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS  670 (732)
Q Consensus       637 -----------------------------------H~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~  670 (732)
                                                         |...|++++|+|+|++||+++.|++|+||++.++
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          347 TETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             --------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             ccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence                                               7888999999999999999999999999999875

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.9e-38  Score=326.67  Aligned_cols=216  Identities=20%  Similarity=0.306  Sum_probs=177.3

Q ss_pred             hhhhccccEeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe-----eEEEEccCCCcCeEEEEEecCCCCCE
Q 004745            5 LVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK-----LLHSIETGHSANVFCTKFVPETSDEL   78 (732)
Q Consensus         5 ~~~~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~-----~~~~~~~~h~~~V~~~~~s~~~~g~~   78 (732)
                      +.+++++..+|+||.+.|++++|+|+ +++||||+.|++|+|||+.+.+     ....+ .+|...|.+++|+|+  |++
T Consensus        24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~d--g~~  100 (340)
T 4aow_A           24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVISSD--GQF  100 (340)
T ss_dssp             --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEECTT--SSE
T ss_pred             cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEECCC--CCE
Confidence            45667788899999999999999997 6899999999999999987653     45556 799999999999999  599


Q ss_pred             EEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004745           79 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  158 (732)
Q Consensus        79 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  158 (732)
                      |++++.|+.|++|+.....          .......+...+..+.+++.+ ++|++++.|+.+++||+.....       
T Consensus       101 l~s~~~d~~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~-------  162 (340)
T 4aow_A          101 ALSGSWDGTLRLWDLTTGT----------TTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCK-------  162 (340)
T ss_dssp             EEEEETTSEEEEEETTTTE----------EEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEE-------
T ss_pred             EEEEcccccceEEeecccc----------eeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCce-------
Confidence            9999999999999998632          245566678888999999954 8899999999999999876531       


Q ss_pred             CcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccc
Q 004745          159 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  237 (732)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  237 (732)
                                       .......|...+..++|+++. ..++++++.|+.|++||+++.+.+..+              
T Consensus       163 -----------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~--------------  211 (340)
T 4aow_A          163 -----------------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH--------------  211 (340)
T ss_dssp             -----------------EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE--------------
T ss_pred             -----------------EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe--------------
Confidence                             112233466688999998864 347889999999999999987544333              


Q ss_pred             ccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                            .+|.. +|++++|+|++++|++++.||.|++||+.+
T Consensus       212 ------~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          212 ------IGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             ------CCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             ------cCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence                  44555 699999999999999999999999999877

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.4e-39  Score=330.06  Aligned_cols=285  Identities=15%  Similarity=0.170  Sum_probs=233.0

Q ss_pred             cCCCcCeEEEEEecCC--CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe
Q 004745           59 TGHSANVFCTKFVPET--SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  136 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~--~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  136 (732)
                      .+|.+.|.+++|+|+.  ++.+|+||+.|++|+||++.....        .....+.+|...|.+++|+|++ .++++++
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~--------~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s   99 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL--------DLQWSLEGHQLGVVSVDISHTL-PIAASSS   99 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE--------EEEEEECCCSSCEEEEEECSSS-SEEEEEE
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe--------eeeeeeccCCCCEEEEEECCCC-CEEEEEe
Confidence            7999999999999852  247999999999999999975321        2245788999999999999954 8999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004745          137 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  216 (732)
Q Consensus       137 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~  216 (732)
                      .|+.|++||+.+++..                         .....+...+.+++|+|+ +++|++|+.|+.|++||+++
T Consensus       100 ~D~~i~lWd~~~~~~~-------------------------~~~~~~~~~~~~~~~spd-g~~l~~g~~dg~v~i~~~~~  153 (321)
T 3ow8_A          100 LDAHIRLWDLENGKQI-------------------------KSIDAGPVDAWTLAFSPD-SQYLATGTHVGKVNIFGVES  153 (321)
T ss_dssp             TTSEEEEEETTTTEEE-------------------------EEEECCTTCCCCEEECTT-SSEEEEECTTSEEEEEETTT
T ss_pred             CCCcEEEEECCCCCEE-------------------------EEEeCCCccEEEEEECCC-CCEEEEEcCCCcEEEEEcCC
Confidence            9999999999887521                         111123446788999999 78999999999999999998


Q ss_pred             CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCcee
Q 004745          217 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIM  296 (732)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  296 (732)
                      .+....+                    ..+.. .|.+++|+|+|++|++++.||.|++||+.+++               
T Consensus       154 ~~~~~~~--------------------~~~~~-~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~---------------  197 (321)
T 3ow8_A          154 GKKEYSL--------------------DTRGK-FILSIAYSPDGKYLASGAIDGIINIFDIATGK---------------  197 (321)
T ss_dssp             CSEEEEE--------------------ECSSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------
T ss_pred             CceeEEe--------------------cCCCc-eEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------------
Confidence            7544332                    22333 59999999999999999999999999987621               


Q ss_pred             eeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhh
Q 004745          297 SFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECL  376 (732)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  376 (732)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (321)
T 3ow8_A          198 --------------------------------------------------------------------------------  197 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 004745          377 CIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKH  456 (732)
Q Consensus       377 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  456 (732)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (321)
T 3ow8_A          198 --------------------------------------------------------------------------------  197 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCccccccc
Q 004745          457 IAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANF  536 (732)
Q Consensus       457 l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  536 (732)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (321)
T 3ow8_A          198 --------------------------------------------------------------------------------  197 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecC
Q 004745          537 LHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSD  616 (732)
Q Consensus       537 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~  616 (732)
                                                                     .++.+.+|...+.++.    |+||+++||+|+.
T Consensus       198 -----------------------------------------------~~~~~~~h~~~v~~l~----~spd~~~l~s~s~  226 (321)
T 3ow8_A          198 -----------------------------------------------LLHTLEGHAMPIRSLT----FSPDSQLLVTASD  226 (321)
T ss_dssp             -----------------------------------------------EEEEECCCSSCCCEEE----ECTTSCEEEEECT
T ss_pred             -----------------------------------------------EEEEEcccCCceeEEE----EcCCCCEEEEEcC
Confidence                                                           2233455666655555    6999999999999


Q ss_pred             CCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCc-----hhHHHHH
Q 004745          617 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT-----ADVLEAM  691 (732)
Q Consensus       617 Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~-----~~~~~~~  691 (732)
                      |++|+|||+++++++..+.+|...|++++|+|++++|+|+|.|++|+|||+.+++++.++.+|.+++.     ++...++
T Consensus       227 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~  306 (321)
T 3ow8_A          227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIV  306 (321)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999988874     3455566


Q ss_pred             HHHHHHhhhccccc
Q 004745          692 ESNQRKLSRNREHS  705 (732)
Q Consensus       692 ~~~~~~~~~~~~~~  705 (732)
                      ....+...++||.+
T Consensus       307 s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          307 SVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEETTCCEEEEECC
T ss_pred             EEeCCCeEEEEeCC
Confidence            77777778888754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.3e-38  Score=336.61  Aligned_cols=220  Identities=14%  Similarity=0.175  Sum_probs=174.6

Q ss_pred             hccccEeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEE-ccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            8 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~-~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      .++..+...+|...|+||+|+| ++++||+|+.||+|+|||+.+++....+ ..+|.+.|++++|+|.. +++|++|+.|
T Consensus       108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~-~~~l~s~s~D  186 (435)
T 4e54_B          108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN-TNQFYASSME  186 (435)
T ss_dssp             TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC-TTEEEEECSS
T ss_pred             ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC-CCEEEEEeCC
Confidence            4456677888999999999999 5679999999999999999877644333 15899999999999853 5899999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      |+|++||++.....        .+.....+...+.+++|+|+ +.+|++|+.||.|++||++...               
T Consensus       187 ~~v~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~~~~---------------  242 (435)
T 4e54_B          187 GTTRLQDFKGNILR--------VFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMDGKE---------------  242 (435)
T ss_dssp             SCEEEEETTSCEEE--------EEECCSSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESSSCB---------------
T ss_pred             CEEEEeeccCCcee--------EEeccCCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccCcce---------------
Confidence            99999999853211        11222234456889999995 4899999999999999986532               


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  245 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (732)
                                 +.....|...|.+++|+|++..+|++|+.|+.|++||+++.+....+..                 ..+
T Consensus       243 -----------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~-----------------~~~  294 (435)
T 4e54_B          243 -----------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY-----------------SLP  294 (435)
T ss_dssp             -----------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB-----------------CCB
T ss_pred             -----------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE-----------------eee
Confidence                       2223457779999999999667899999999999999988754432210                 134


Q ss_pred             CccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      |.. .|++++|+|+|++|++++.||.|+|||+.++.
T Consensus       295 h~~-~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          295 HRH-PVNAACFSPDGARLLTTDQKSEIRVYSASQWD  329 (435)
T ss_dssp             CSS-CEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred             ccc-cccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence            555 69999999999999999999999999998854

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-38  Score=336.42  Aligned_cols=166  Identities=16%  Similarity=0.203  Sum_probs=142.4

Q ss_pred             EEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEE
Q 004745           55 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  134 (732)
Q Consensus        55 ~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  134 (732)
                      ..+ .+|..+|++++|+|+  +.+|++|+.||+|++||+.++          .....+.+|...|.+++|+|+ +++|++
T Consensus       102 ~~l-~gh~~~V~~~~~~p~--~~~l~s~s~Dg~i~vwd~~~~----------~~~~~l~~h~~~V~~v~~~~~-~~~l~s  167 (410)
T 1vyh_C          102 YAL-SGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETG----------DFERTLKGHTDSVQDISFDHS-GKLLAS  167 (410)
T ss_dssp             CEE-ECCSSCEEEEEECSS--SSEEEEEESSSCEEEEETTTC----------CCCEEECCCSSCEEEEEECTT-SSEEEE
T ss_pred             Eee-cccCCcEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC----------cEEEEEeccCCcEEEEEEcCC-CCEEEE
Confidence            344 689999999999999  589999999999999999864          236788999999999999995 489999


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEEC
Q 004745          135 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  214 (732)
Q Consensus       135 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~  214 (732)
                      |+.|++|++||+.+.+                         .+....+|...|.+++|+|+ +.+|++|+.|++|++||+
T Consensus       168 gs~D~~i~iwd~~~~~-------------------------~~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~  221 (410)
T 1vyh_C          168 CSADMTIKLWDFQGFE-------------------------CIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEV  221 (410)
T ss_dssp             EETTSCCCEEETTSSC-------------------------EEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEET
T ss_pred             EeCCCeEEEEeCCCCc-------------------------eeEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEC
Confidence            9999999999997765                         22334567779999999998 789999999999999999


Q ss_pred             CCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          215 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      +++..+..+                    .+|.. .|.++.|+|++++|++++.|+.|++||+.++.
T Consensus       222 ~~~~~~~~~--------------------~~h~~-~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~  267 (410)
T 1vyh_C          222 QTGYCVKTF--------------------TGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKE  267 (410)
T ss_dssp             TTCCEEEEE--------------------ECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             CCCcEEEEE--------------------eCCCc-cEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            987544333                    44555 59999999999999999999999999998854

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-38  Score=339.07  Aligned_cols=227  Identities=14%  Similarity=0.165  Sum_probs=167.8

Q ss_pred             hhhccccEee-eccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCC---Ce---eEEEEccCCCcCeEEEEEecCCCCC
Q 004745            6 VRRLSQEREL-EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS---RK---LLHSIETGHSANVFCTKFVPETSDE   77 (732)
Q Consensus         6 ~~~~~~~~~l-~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~---~~---~~~~~~~~h~~~V~~~~~s~~~~g~   77 (732)
                      ..+.+++..+ ++|.+.|++++|+| ++++||+|+.||+|+|||+.+   +.   ....+  +|...|.+++|+|+  ++
T Consensus        49 ~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~--~~  124 (437)
T 3gre_A           49 NLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPN--FD  124 (437)
T ss_dssp             GCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTT--SS
T ss_pred             cccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCC--CC
Confidence            3456777888 89999999999999 999999999999999999876   43   23333  69999999999998  58


Q ss_pred             EEEEEECCCcEEEEEcCCC-CCCCCCCCCCCCceeec--c--ccCceeEEE--EecCCCcEEEEEeCCCcEEEEECCCCC
Q 004745           78 LVVSGAGDAEVRLFNLSRF-SGRGLDDNAITPSALYQ--C--HTRRVKKLA--VEVGNPHVVWSASEDGTLRQHDFRQGS  150 (732)
Q Consensus        78 ~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~--~--h~~~v~~l~--~~p~~~~~l~s~s~dg~i~vwd~~~~~  150 (732)
                      +|++|+.||.|++||+... .+.........++..+.  .  +...+.++.  +++ ++.+|++++.|+.|++||+++++
T Consensus       125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~  203 (437)
T 3gre_A          125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLE  203 (437)
T ss_dssp             EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCe
Confidence            9999999999999999521 11110000000111111  1  345566666  445 45899999999999999998876


Q ss_pred             CCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCC
Q 004745          151 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  230 (732)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~  230 (732)
                      ..              ..+         ....|...|++++|+|+ +.+|++|+.||.|++||+++.+.+..+.      
T Consensus       204 ~~--------------~~~---------~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~------  253 (437)
T 3gre_A          204 RL--------------QII---------ENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFNVLIRSWS------  253 (437)
T ss_dssp             EE--------------EEE---------ECCGGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEEB------
T ss_pred             ee--------------EEE---------ccCCCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCccEEEEEe------
Confidence            21              110         11125668999999999 8899999999999999999865444321      


Q ss_pred             CccccccccccccCCCccccEEEEEEcC----CCCEEEEEecCCeEEEEECCCCC
Q 004745          231 PCVNYFCPMHLSEHGRSSLHLTHVTFSP----NGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp----~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                                   .+|.. +|++++|+|    ++++|++++.||.|++||+.+++
T Consensus       254 -------------~~~~~-~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  294 (437)
T 3gre_A          254 -------------FGDHA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH  294 (437)
T ss_dssp             -------------CTTCE-EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred             -------------cCCCC-ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence                         12333 599996664    68899999999999999998843

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1e-37  Score=322.88  Aligned_cols=326  Identities=11%  Similarity=0.060  Sum_probs=254.1

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS   97 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~   97 (732)
                      |.++|.+++|+|||++++++..++.+.+|+.......... .+|...|.+++|+|+  +++|++++ ||.|++||+....
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~-dg~i~iw~~~~~~   83 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNP--TRHVYTGG-KGCVKVWDISHPG   83 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSS--SSEEEEEC-BSEEEEEETTSTT
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecC--CcEEEEcC-CCeEEEEECCCCC
Confidence            5678999999999999999888887877776655554444 489999999999999  58999998 9999999998643


Q ss_pred             CCCCCCCCCCCceeec--cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004745           98 GRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  175 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (732)
                      ..       ..+..+.  +|...|.+++|+|+ +++|++++.|+.|++||+.+++..                       
T Consensus        84 ~~-------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~-----------------------  132 (337)
T 1gxr_A           84 NK-------SPVSQLDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPR-----------------------  132 (337)
T ss_dssp             CC-------SCSEEEECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEEECCCC--E-----------------------
T ss_pred             ce-------eeeecccccCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCCcc-----------------------
Confidence            22       1233333  78999999999995 489999999999999999876521                       


Q ss_pred             cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEE
Q 004745          176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  255 (732)
Q Consensus       176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  255 (732)
                      .......+...+.+++|+|+ +++|++++.|+.|++||+++.+.+..+                    .+|.. .|.+++
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~--------------------~~~~~-~i~~~~  190 (337)
T 1gxr_A          133 IKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVRQF--------------------QGHTD-GASCID  190 (337)
T ss_dssp             EEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEE
T ss_pred             eeeecccCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeee--------------------ecccC-ceEEEE
Confidence            11112235568999999998 789999999999999999987544333                    33444 599999


Q ss_pred             EcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHH
Q 004745          256 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRML  335 (732)
Q Consensus       256 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l  335 (732)
                      |+|++++|++++.||.|++||+.+++.....                                                 
T Consensus       191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-------------------------------------------------  221 (337)
T 1gxr_A          191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-------------------------------------------------  221 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------------------------------------------------
T ss_pred             ECCCCCEEEEEecCCcEEEEECCCCceEeee-------------------------------------------------
Confidence            9999999999999999999999873211000                                                 


Q ss_pred             HHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHH
Q 004745          336 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY  415 (732)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (732)
                                                                                                      
T Consensus       222 --------------------------------------------------------------------------------  221 (337)
T 1gxr_A          222 --------------------------------------------------------------------------------  221 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccC
Q 004745          416 MSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEAN  495 (732)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  495 (732)
                                                                                                      
T Consensus       222 --------------------------------------------------------------------------------  221 (337)
T 1gxr_A          222 --------------------------------------------------------------------------------  221 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCc
Q 004745          496 SDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIP  575 (732)
Q Consensus       496 ~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~  575 (732)
                                                                         .+...+.+++|+|++++|++++.++...+
T Consensus       222 ---------------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~  250 (337)
T 1gxr_A          222 ---------------------------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEV  250 (337)
T ss_dssp             ---------------------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ---------------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence                                                               01122345566666666666655555555


Q ss_pred             cccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEE
Q 004745          576 YQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVAT  655 (732)
Q Consensus       576 ~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S  655 (732)
                      |+....  ....+.+|...+.++.    |+|++++|++++.||.|++||+.+++.+.. ..|...|++++|+|++++|++
T Consensus       251 ~~~~~~--~~~~~~~~~~~v~~~~----~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~  323 (337)
T 1gxr_A          251 LHVNKP--DKYQLHLHESCVLSLK----FAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             EETTSS--CEEEECCCSSCEEEEE----ECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEE
T ss_pred             EECCCC--CeEEEcCCccceeEEE----ECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEE
Confidence            666552  3456788888866555    699999999999999999999999998854 458999999999999999999


Q ss_pred             ecCCCcEEEEcC
Q 004745          656 SGIDNTIKIWTP  667 (732)
Q Consensus       656 ~s~D~~i~vW~~  667 (732)
                      ++.||+|++|++
T Consensus       324 ~~~dg~i~iw~~  335 (337)
T 1gxr_A          324 GSGDKKATVYEV  335 (337)
T ss_dssp             EETTSCEEEEEE
T ss_pred             ecCCCeEEEEEE
Confidence            999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.6e-37  Score=323.78  Aligned_cols=218  Identities=13%  Similarity=0.205  Sum_probs=176.5

Q ss_pred             hhccccEeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeEEEEc-cCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~~~~~~-~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      .+++..+.+.+|...|++++|+|++ ++||+|+.|+.|+|||+.+++....+. .+|...|.+++|+|+. +++|++++.
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~  139 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN-TNQLFVSSI  139 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE-EEEEEEEET
T ss_pred             cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC-CCEEEEEeC
Confidence            4567788999999999999999999 999999999999999999888777763 2699999999999942 589999999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeec---cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      |+.|++||+....           +..+.   +|...|.+++|+|++ ++|++++.|+.|++||++ ++.          
T Consensus       140 d~~i~iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~----------  196 (383)
T 3ei3_B          140 RGATTLRDFSGSV-----------IQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHE----------  196 (383)
T ss_dssp             TTEEEEEETTSCE-----------EEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCE----------
T ss_pred             CCEEEEEECCCCc-----------eEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCE----------
Confidence            9999999998521           33443   445889999999955 899999999999999984 221          


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                                     +.....|...|.+++|+|++..+|++|+.|+.|++||+++.+....         ++..      
T Consensus       197 ---------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---------~~~~------  246 (383)
T 3ei3_B          197 ---------------IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNS---------YIAE------  246 (383)
T ss_dssp             ---------------EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTC---------EEEE------
T ss_pred             ---------------EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccc---------eEEE------
Confidence                           1112246678999999999434999999999999999987532211         1111      


Q ss_pred             ccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEECCCCC
Q 004745          242 SEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                        .+|.. .|++++|+| ++++|++++.|+.|++||+.++.
T Consensus       247 --~~~~~-~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          247 --MPHEK-PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             --EECSS-CEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred             --ecCCC-ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence              12333 699999999 99999999999999999998854

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-36  Score=318.34  Aligned_cols=221  Identities=18%  Similarity=0.286  Sum_probs=177.5

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      .....|.+|.++|++++|+|++++|++|+.||.|+|||+.+++.+..+ .+|...|.+++|+|+  +++|++++.||.|+
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~   99 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCF--TKYCVTGSADYSIK   99 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTTEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcCC--CCEEEEEeCCCeEE
Confidence            345668999999999999999999999999999999999999999998 799999999999998  58999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCCCCCCCCCCCcccce
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      +||+.+..          ++..+. |...|.+++|+|++ .++++++.+     +.|++||+...............   
T Consensus       100 iwd~~~~~----------~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~---  164 (369)
T 3zwl_B          100 LWDVSNGQ----------CVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE---  164 (369)
T ss_dssp             EEETTTCC----------EEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS---
T ss_pred             EEECCCCc----------EEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccc---
Confidence            99998642          245555 88899999999955 889999988     99999999887643211110000   


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCcccccccccccc
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                              ....+. .......+.+++|+|+ +++|++++.||.|++||+++ .+.+..+                    
T Consensus       165 --------~~~~~~-~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------------  214 (369)
T 3zwl_B          165 --------PIHKII-THEGLDAATVAGWSTK-GKYIIAGHKDGKISKYDVSNNYEYVDSI--------------------  214 (369)
T ss_dssp             --------CSEEEE-CCTTCCCEEEEEECGG-GCEEEEEETTSEEEEEETTTTTEEEEEE--------------------
T ss_pred             --------eeeecc-CCcCccceeEEEEcCC-CCEEEEEcCCCEEEEEECCCCcEeEEEE--------------------
Confidence                    000111 1112228999999998 78999999999999999987 3332222                    


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .+|.. .|.+++|+|++++|++++.||.|++||+.+
T Consensus       215 ~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  249 (369)
T 3zwl_B          215 DLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVST  249 (369)
T ss_dssp             ECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence            33434 599999999999999999999999999987

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.3e-37  Score=311.39  Aligned_cols=167  Identities=17%  Similarity=0.231  Sum_probs=139.4

Q ss_pred             eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004745           53 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  132 (732)
Q Consensus        53 ~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  132 (732)
                      ...++ .+|.+.|.+++|+|+  +++|++++.||+|++||+.+.          ..+..+..|...|.+++|+|++ ++|
T Consensus         5 ~~~~~-~~h~~~V~~~~fsp~--~~~l~s~~~dg~v~lWd~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l   70 (304)
T 2ynn_A            5 IKKTF-SNRSDRVKGIDFHPT--EPWVLTTLYSGRVELWNYETQ----------VEVRSIQVTETPVRAGKFIARK-NWI   70 (304)
T ss_dssp             CEEEE-EEECSCEEEEEECSS--SSEEEEEETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEEEGGG-TEE
T ss_pred             eEEee-cCCCCceEEEEECCC--CCEEEEEcCCCcEEEEECCCC----------ceeEEeeccCCcEEEEEEeCCC-CEE
Confidence            44556 799999999999999  599999999999999999864          2367888999999999999954 899


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004745          133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  212 (732)
Q Consensus       133 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw  212 (732)
                      ++|+.|+.|++||+.+++.                         +.....|...|.+++|+|+ +.+|++|+.|++|++|
T Consensus        71 ~s~s~d~~i~vwd~~~~~~-------------------------~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lW  124 (304)
T 2ynn_A           71 IVGSDDFRIRVFNYNTGEK-------------------------VVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLW  124 (304)
T ss_dssp             EEEETTSEEEEEETTTCCE-------------------------EEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEE
T ss_pred             EEECCCCEEEEEECCCCcE-------------------------EEEEeCCCCcEEEEEEcCC-CCEEEEECCCCeEEEE
Confidence            9999999999999988762                         1222357778999999999 7899999999999999


Q ss_pred             ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEECCC
Q 004745          213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      |+++...+.            ..+       .+|.. .|++++|+| ++.+|++|+.|+.|++||+.+
T Consensus       125 d~~~~~~~~------------~~~-------~~h~~-~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          125 NWENNWALE------------QTF-------EGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             EGGGTTEEE------------EEE-------CCCCS-CEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred             ECCCCcchh------------hhh-------cccCC-cEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence            998653221            111       45555 599999999 678999999999999999876

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.3e-37  Score=323.75  Aligned_cols=229  Identities=16%  Similarity=0.154  Sum_probs=174.6

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe------eEEEEccCCCcCeEEEEEecC--CCC---CE
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPE--TSD---EL   78 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~------~~~~~~~~h~~~V~~~~~s~~--~~g---~~   78 (732)
                      ...+.+++|.++|++++|+|  ++|++|+.||+|+|||+.+++      .+..+ .+|...|.+++|+|+  .++   .+
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccE
Confidence            45677889999999999998  799999999999999999887      67777 699999999999997  115   69


Q ss_pred             EEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccc-----cCceeEEEEe----cCCCcE-EEEEeCCCcEEEEECCC
Q 004745           79 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-----TRRVKKLAVE----VGNPHV-VWSASEDGTLRQHDFRQ  148 (732)
Q Consensus        79 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~----p~~~~~-l~s~s~dg~i~vwd~~~  148 (732)
                      |++++.|+.|++||+.+.....     ...+..+..|     ...|.+++|+    |++ .+ |++++.||.|++||+.+
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETK-----KVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTC-----CEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred             EEEEcCCCCEEEEEccCCcccc-----cccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCc
Confidence            9999999999999998643210     0115667778     5899999999    855 77 99999999999999988


Q ss_pred             ------CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Q 004745          149 ------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  222 (732)
Q Consensus       149 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~  222 (732)
                            .+.....      ....+..       .+.....+...|.+++|+|+ + +|++++.|+.|++||+++.+.+..
T Consensus       158 ~~~~~~~~~~~~~------~~~~~~~-------~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~  222 (397)
T 1sq9_A          158 FADESNSLTLNWS------PTLELQG-------TVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYN  222 (397)
T ss_dssp             SSSHHHHTTTCCC------CEEEEEE-------EECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred             cccccccceeecc------Ccceeee-------eeccccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCceeEE
Confidence                  4422100      0000000       01111345668999999999 6 999999999999999998755443


Q ss_pred             cccCCCCCCccccccccccccCCC---ccccEEEEEEcCCCCEEEEEecC---CeEEEEECCCC
Q 004745          223 CQKRMSPPPCVNYFCPMHLSEHGR---SSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA  280 (732)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~~~~~d---g~v~iwd~~~~  280 (732)
                      +...                 .+|   .. .|.+++|+|++++|++++.|   |.|++||+.++
T Consensus       223 ~~~~-----------------~~h~~~~~-~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~  268 (397)
T 1sq9_A          223 FESQ-----------------HSMINNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  268 (397)
T ss_dssp             EECC-----------------C---CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             Eecc-----------------ccccccCC-ccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            3100                 113   33 69999999999999999999   99999999874

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-38  Score=341.99  Aligned_cols=218  Identities=11%  Similarity=0.089  Sum_probs=159.9

Q ss_pred             EeeeccCCceeEEEEcCCC---------CEEEE-------------------EeCCCcEEEEeCCCCeeE----EEEccC
Q 004745           13 RELEGHQGCVNAISWNSKG---------SLLIS-------------------GSDDTHINVWSYSSRKLL----HSIETG   60 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~dg---------~~las-------------------g~~dg~i~vWd~~~~~~~----~~~~~~   60 (732)
                      .++. +.+.|.+++|+|++         ++||+                   ++.|++|+|||+.+++..    ..+ .+
T Consensus       128 ~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l-~~  205 (524)
T 2j04_B          128 FIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI-VH  205 (524)
T ss_dssp             EEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE-EE
T ss_pred             EEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE-Ee
Confidence            3443 67899999999876         56666                   457889999999877642    234 56


Q ss_pred             CCcCeEEEEEecC----CCCCEEEEEECCCcEEEEEcCCCCCCCC-CCCCCCCceeeccccCceeEEEEecCCCcEEEEE
Q 004745           61 HSANVFCTKFVPE----TSDELVVSGAGDAEVRLFNLSRFSGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA  135 (732)
Q Consensus        61 h~~~V~~~~~s~~----~~g~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  135 (732)
                      |.+.|.+++|+|+    .++.+|++++.||+|++||+........ ......+...+.+|...|++++|+| + ..|++|
T Consensus       206 ~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasg  283 (524)
T 2j04_B          206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCG  283 (524)
T ss_dssp             CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEE
T ss_pred             cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEE
Confidence            7889999999996    1247999999999999999986432100 0001134567889999999999998 3 589999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEE--EecCCCC-CEEEEEeCCCeEEEE
Q 004745          136 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC--DISSTRP-HLLLVGGSDAFARLY  212 (732)
Q Consensus       136 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~~-~~l~tg~~dg~v~iw  212 (732)
                      +.||+|++||++++..+                        ......|...|.++  .|+|+ + .+|++|+.|++|+||
T Consensus       284 s~DgtV~lWD~~~~~~~------------------------~~~~~~H~~~V~sv~~~~s~~-g~~~laS~S~D~tvklW  338 (524)
T 2j04_B          284 FKNGFVAEFDLTDPEVP------------------------SFYDQVHDSYILSVSTAYSDF-EDTVVSTVAVDGYFYIF  338 (524)
T ss_dssp             ETTSEEEEEETTBCSSC------------------------SEEEECSSSCEEEEEEECCTT-SCCEEEEEETTSEEEEE
T ss_pred             eCCCEEEEEECCCCCCc------------------------eEEeecccccEEEEEEEcCCC-CCeEEEEeccCCeEEEE
Confidence            99999999999875421                        11123466789999  56776 5 899999999999999


Q ss_pred             ECCCCCCCcccccCCCCCCccccccccccccCCCcc-ccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      |+++.+.+..+                    .+|.. ..|.+++|+|+++.|++++.|++|++||+++
T Consensus       339 D~~~~~~~~~~--------------------~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~  386 (524)
T 2j04_B          339 NPKDIATTKTT--------------------VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA  386 (524)
T ss_dssp             CGGGHHHHCEE--------------------EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC
T ss_pred             ECCCCCccccc--------------------ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc
Confidence            99875433222                    12221 1378899999999999999999999999887

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.7e-36  Score=342.83  Aligned_cols=215  Identities=20%  Similarity=0.251  Sum_probs=178.3

Q ss_pred             hccccEeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-----eeEEEEccCCCcCeEEEEEecCCCCCEEEE
Q 004745            8 RLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVS   81 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~-----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s   81 (732)
                      .+++...|++|.+.|++++|+|++ ++|+||+.|++|+|||+.+.     .....+ .+|...|.+++|+|+  +++|++
T Consensus       371 ~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~--g~~l~s  447 (694)
T 3dm0_A          371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSD--GQFALS  447 (694)
T ss_dssp             SSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEECTT--SSEEEE
T ss_pred             ccchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEECCC--CCEEEE
Confidence            345567899999999999999865 79999999999999998753     344556 799999999999999  599999


Q ss_pred             EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004745           82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      |+.|++|+|||+.++          .++..+.+|...|.+++|+|++ ++|++++.|++|++||+......         
T Consensus       448 gs~Dg~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~---------  507 (694)
T 3dm0_A          448 GSWDGELRLWDLAAG----------VSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKY---------  507 (694)
T ss_dssp             EETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE---------
T ss_pred             EeCCCcEEEEECCCC----------cceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcce---------
Confidence            999999999999864          2367888999999999999955 88999999999999997543210         


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  240 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (732)
                         .          ......+|...|.+++|+|++ ...|++|+.|++|++||+++.+....+                 
T Consensus       508 ---~----------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~-----------------  557 (694)
T 3dm0_A          508 ---T----------ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL-----------------  557 (694)
T ss_dssp             ---E----------ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE-----------------
T ss_pred             ---e----------eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE-----------------
Confidence               0          111224577789999999984 258999999999999999876544332                 


Q ss_pred             cccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       241 ~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                         .+|.. .|++++|+|++++|++++.||.|++||+.+
T Consensus       558 ---~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          558 ---AGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             ---CCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred             ---cCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence               45655 599999999999999999999999999987

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-36  Score=307.45  Aligned_cols=210  Identities=20%  Similarity=0.231  Sum_probs=171.9

Q ss_pred             hhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      ...+++.+++.+|.+.|++++| |++++|++|+.||.|++||+.+++....+ ..|...|.+++|+|+  +++|++++.|
T Consensus         5 ~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~d   80 (313)
T 3odt_A            5 FTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDSE--KELLLFGGKD   80 (313)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEETT--TTEEEEEETT
T ss_pred             cccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECCC--CCEEEEecCC
Confidence            3456788999999999999999 99999999999999999999999888888 789999999999998  5999999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      +.|++|++......       .++..+.+|...|.++.|.   ++++++++.||.|++||  ..+               
T Consensus        81 g~i~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~---------------  133 (313)
T 3odt_A           81 TMINGVPLFATSGE-------DPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGS---------------  133 (313)
T ss_dssp             SCEEEEETTCCTTS-------CC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTE---------------
T ss_pred             CeEEEEEeeecCCC-------CcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCc---------------
Confidence            99999999864322       3467788999999999994   37899999999999999  221               


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  245 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (732)
                                .+.....|...+.++.|.|.++.++++++.|+.|++||...  ....             +       ..
T Consensus       134 ----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~-------------~-------~~  181 (313)
T 3odt_A          134 ----------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKT-------------F-------SG  181 (313)
T ss_dssp             ----------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--EEEE-------------E-------CS
T ss_pred             ----------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--eEEE-------------E-------ec
Confidence                      01112235668999999984488999999999999999432  1111             1       22


Q ss_pred             CccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .....+.+++|+|++. +++++.||.|++||+.+
T Consensus       182 ~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~  214 (313)
T 3odt_A          182 IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT  214 (313)
T ss_dssp             SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT
T ss_pred             cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc
Confidence            1223699999999998 99999999999999876

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.6e-36  Score=325.48  Aligned_cols=203  Identities=22%  Similarity=0.364  Sum_probs=168.9

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      .+..+.+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+..+ .+|...|.+++|++    ++|++|+.||+|
T Consensus       108 ~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~----~~l~s~~~dg~i  181 (445)
T 2ovr_B          108 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRD----NIIISGSTDRTL  181 (445)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEET----TEEEEEETTSCE
T ss_pred             cceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEecC----CEEEEEeCCCeE
Confidence            4467889999988643 24556899999999999999999999999988 79999999999984    589999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      ++||+.++          .++..+.+|...|.++.|++   +.+++++.||.|++||+.+++..                
T Consensus       182 ~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~----------------  232 (445)
T 2ovr_B          182 KVWNAETG----------ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL----------------  232 (445)
T ss_dssp             EEEETTTT----------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE----------------
T ss_pred             EEEECCcC----------cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEE----------------
Confidence            99999864          33678889999999999964   67999999999999999886521                


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                               .....|...|.++.|  + +.++++|+.||.|++||+++.+.+..+                    .+|..
T Consensus       233 ---------~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------~~~~~  280 (445)
T 2ovr_B          233 ---------HVLMGHVAAVRCVQY--D-GRRVVSGAYDFMVKVWDPETETCLHTL--------------------QGHTN  280 (445)
T ss_dssp             ---------EEEECCSSCEEEEEE--C-SSCEEEEETTSCEEEEEGGGTEEEEEE--------------------CCCSS
T ss_pred             ---------EEEcCCcccEEEEEE--C-CCEEEEEcCCCEEEEEECCCCcEeEEe--------------------cCCCC
Confidence                     112246668999999  3 678999999999999999877544333                    34544


Q ss_pred             ccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                       .|.+++|  ++++|++++.||.|++||+.+++
T Consensus       281 -~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~  310 (445)
T 2ovr_B          281 -RVYSLQF--DGIHVVSGSLDTSIRVWDVETGN  310 (445)
T ss_dssp             -CEEEEEE--CSSEEEEEETTSCEEEEETTTCC
T ss_pred             -ceEEEEE--CCCEEEEEeCCCeEEEEECCCCC
Confidence             5999999  88999999999999999998854

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.6e-36  Score=316.22  Aligned_cols=231  Identities=12%  Similarity=0.182  Sum_probs=172.0

Q ss_pred             eeeccCCceeEEEEcCC----CCEEEEEeCCCcEEEEeCCCCeeEEEEc----cCCCcCeEEEEEecCCC--CCEEEEEE
Q 004745           14 ELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETS--DELVVSGA   83 (732)
Q Consensus        14 ~l~~h~~~V~~l~~s~d----g~~lasg~~dg~i~vWd~~~~~~~~~~~----~~h~~~V~~~~~s~~~~--g~~l~s~~   83 (732)
                      ...+|.++|++++|+|+    ...+++++.++.|+|||+.+++.+..+.    ..|...|++++|+|+..  +.+|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            45589999999999984    4456666667799999999887766652    12668899999999842  36999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      .||.|++||+.+.          .++..+.+|...|.+++|+|+++++|++++.||.|++||+++++..           
T Consensus        93 ~dg~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------  151 (366)
T 3k26_A           93 SRGIIRIINPITM----------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV-----------  151 (366)
T ss_dssp             TTCEEEEECTTTC----------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE-----------
T ss_pred             CCCEEEEEEchhc----------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE-----------
Confidence            9999999999863          3367888999999999999966699999999999999999876521           


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCC-------C-Ccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP-------P-PCVNY  235 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-------~-~~~~~  235 (732)
                                 ..+.....|...|.+++|+|+ +.+|++++.||.|++||+++.+.+..+......       . .....
T Consensus       152 -----------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          152 -----------AIFGGVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             -----------EEECSTTSCSSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             -----------EEecccccccCceeEEEECCC-CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence                       111122456779999999998 789999999999999999976544332210000       0 00000


Q ss_pred             ccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      ..+......+|.. .|.+++|+  +++|++++.||.|++||+.+.
T Consensus       220 ~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~  261 (366)
T 3k26_A          220 HFPDFSTRDIHRN-YVDCVRWL--GDLILSKSCENAIVCWKPGKM  261 (366)
T ss_dssp             CCCSEEECSSCSS-CCCEEEEE--TTEEEEECSSSEEEEEEESST
T ss_pred             ccCccccccCCcc-eEEEEEEc--CCEEEEEecCCEEEEEeCCCc
Confidence            0000011123444 69999998  779999999999999998873

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.9e-36  Score=313.78  Aligned_cols=214  Identities=13%  Similarity=0.160  Sum_probs=167.1

Q ss_pred             cEeeeccCCceeEEEEcCCCCEE-EEEeC---CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCC-CCCEEEEEECCC
Q 004745           12 ERELEGHQGCVNAISWNSKGSLL-ISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDA   86 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~l-asg~~---dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~-~g~~l~s~~~dg   86 (732)
                      .+.+++|...|++++|+|++..+ ++|+.   |+.|+|||+.+++.......+|...|.+++|+|+. ++.+|++|+.||
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            34568899999999999999655 56665   89999999999887665545899999999999982 138999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEE------ecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV------EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  160 (732)
                      .|++||+.+..         .++..+.+|...|.++.|      +| ++++|++++.||.|++||+++++....      
T Consensus        91 ~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~------  154 (357)
T 3i2n_A           91 NLHIWNLEAPE---------MPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVA------  154 (357)
T ss_dssp             CEEEECTTSCS---------SCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSE------
T ss_pred             eEEEEeCCCCC---------ccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcce------
Confidence            99999998643         136788899999999965      56 458999999999999999988752210      


Q ss_pred             ccceEEeeccCCccccccCCCC-CccceEEEE----ecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccc
Q 004745          161 ECRNILLDLRCGAKRSLADPPK-QTLSLKSCD----ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  235 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~----~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  235 (732)
                                     .+....+ ....+.++.    |+|+ +.+|++++.|+.|++||+++.+....             
T Consensus       155 ---------------~~~~~~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~-------------  205 (357)
T 3i2n_A          155 ---------------NMEPVQGENKRDCWTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLRNMALRWE-------------  205 (357)
T ss_dssp             ---------------EECCCTTSCCCCEEEEEEECCCC-C-CCEEEEEETTSEEEEEETTTTEEEEE-------------
T ss_pred             ---------------eccccCCCCCCceEEEEEEeccCCC-CCEEEEEccCCeEEEEECccCceeee-------------
Confidence                           1111111 133678887    6777 78999999999999999987653211             


Q ss_pred             ccccccccCCCccccEEEEEEcC---CCCEEEEEecCCeEEEEECCC
Q 004745          236 FCPMHLSEHGRSSLHLTHVTFSP---NGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~l~~sp---~g~~l~~~~~dg~v~iwd~~~  279 (732)
                              ..+.. .|.+++|+|   ++++|++++.||.|++||+.+
T Consensus       206 --------~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  243 (357)
T 3i2n_A          206 --------TNIKN-GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT  243 (357)
T ss_dssp             --------EECSS-CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred             --------cCCCC-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence                    12333 599999999   999999999999999999876

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.7e-36  Score=313.16  Aligned_cols=224  Identities=15%  Similarity=0.162  Sum_probs=174.9

Q ss_pred             eeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004745           14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF   91 (732)
Q Consensus        14 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw   91 (732)
                      .+..|.++|++++|+|++++||+|+.|+.|+|||+.+++  .+..+ .+|...|.+++|+|+  +++|++++.|+.|++|
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETT--TTEEEEEETTSCEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCC--CCEEEEEcCCCeEEEE
Confidence            456699999999999999999999999999999999987  77788 789999999999998  5999999999999999


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      |+.+...        .....+..|...|.+++|+|++ ++|++++.|+.|++||+......           ..      
T Consensus        80 d~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~-----------~~------  133 (372)
T 1k8k_C           80 TLKGRTW--------KPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDW-----------WV------  133 (372)
T ss_dssp             EEETTEE--------EEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTE-----------EE------
T ss_pred             ECCCCee--------eeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcc-----------ee------
Confidence            9976421        1134456789999999999954 89999999999999999876521           00      


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccc-----cCCCCCCccccccccccccCCC
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ-----KRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                          .......|...|.+++|+|+ +.+|++++.|+.|++||++.........     .......++..+       .+|
T Consensus       134 ----~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  201 (372)
T 1k8k_C          134 ----CKHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-------SSS  201 (372)
T ss_dssp             ----EEEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-------CCC
T ss_pred             ----eeeeecccCCCeeEEEEcCC-CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec-------CCC
Confidence                01112345668999999998 7899999999999999986432111000     000011122222       234


Q ss_pred             ccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .. .|++++|+|++++|++++.||.|++||+.+
T Consensus       202 ~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  233 (372)
T 1k8k_C          202 CG-WVHGVCFSANGSRVAWVSHDSTVCLADADK  233 (372)
T ss_dssp             SS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             CC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            44 699999999999999999999999999876

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.8e-36  Score=313.78  Aligned_cols=171  Identities=13%  Similarity=0.196  Sum_probs=140.5

Q ss_pred             CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCc
Q 004745           51 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH  130 (732)
Q Consensus        51 ~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  130 (732)
                      .+....+ .+|.+.|++++|+|+  +++|++|+.||+|++||+.+.          ..+..+..|...|.+++|+|++ +
T Consensus        45 ~~~~~~l-~gH~~~v~~~~~s~d--~~~l~s~s~Dg~v~iWd~~~~----------~~~~~~~~~~~~v~~~~~s~~~-~  110 (340)
T 1got_B           45 MRTRRTL-RGHLAKIYAMHWGTD--SRLLLSASQDGKLIIWDSYTT----------NKVHAIPLRSSWVMTCAYAPSG-N  110 (340)
T ss_dssp             CCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTTEEEEEETTTC----------CEEEEEECSSSCEEEEEECTTS-S
T ss_pred             chhheee-cCCCCceEEEEECCC--CCEEEEEeCCCcEEEEECCCC----------CcceEeecCCccEEEEEECCCC-C
Confidence            3455666 799999999999999  599999999999999999864          2367788899999999999954 8


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004745          131 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  210 (732)
Q Consensus       131 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~  210 (732)
                      +|++++.|+.|++||+.+.+..                     ........+|...|.++.|+++ + .+++++.|++|+
T Consensus       111 ~l~s~~~d~~v~iw~~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~~~~-~-~l~s~s~d~~i~  167 (340)
T 1got_B          111 YVACGGLDNICSIYNLKTREGN---------------------VRVSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCA  167 (340)
T ss_dssp             EEEEEETTCEEEEEETTTCSBS---------------------CEEEEEEECCSSCEEEEEEEET-T-EEEEEETTSCEE
T ss_pred             EEEEEeCCCeEEEEECccCCCc---------------------ceeEEEecCCCccEEEEEECCC-C-cEEEEECCCcEE
Confidence            9999999999999999775411                     0011122356778999999987 4 699999999999


Q ss_pred             EEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +||+++++.+..+                    .+|.. .|++++|+|++++|++|+.|+.|++||+.+
T Consensus       168 ~wd~~~~~~~~~~--------------------~~h~~-~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~  215 (340)
T 1got_B          168 LWDIETGQQTTTF--------------------TGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVRE  215 (340)
T ss_dssp             EEETTTTEEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEECCCCcEEEEE--------------------cCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            9999987654433                    45655 599999999999999999999999999876

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.7e-37  Score=322.75  Aligned_cols=313  Identities=15%  Similarity=0.177  Sum_probs=253.8

Q ss_pred             CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCcee
Q 004745           41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK  120 (732)
Q Consensus        41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~  120 (732)
                      ..+..|+..+..+...+ .+|.+.|++++|+|+  +++|+||+.|++|+|||+.+.          .....+..|...|.
T Consensus        46 ~~~~~~~~~~~~~~~~l-~gH~~~V~~~~~sp~--~~~l~s~s~D~~v~iWd~~~~----------~~~~~~~~h~~~v~  112 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTL-QGHSGKVYSLDWTPE--KNWIVSASQDGRLIVWNALTS----------QKTHAIKLHCPWVM  112 (380)
T ss_dssp             GGCCCCCCCCCEEEEEE-CCCSSCEEEEEECTT--SSCEEEEETTSEEEEEETTTT----------EEEEEEECCCTTCC
T ss_pred             ccccccccceeEEeecc-cccccEEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC----------ccceEEecCCCCEE
Confidence            45567888888888888 899999999999999  589999999999999999864          23678889999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEE
Q 004745          121 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL  200 (732)
Q Consensus       121 ~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l  200 (732)
                      +++|+|++ ++|++|+.|+.|++||+.+....                  .+.........+|...+.++.|.|+++..|
T Consensus       113 ~~~~s~~g-~~las~~~d~~v~iw~~~~~~~~------------------~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l  173 (380)
T 3iz6_a          113 ECAFAPNG-QSVACGGLDSACSIFNLSSQADR------------------DGNMPVSRVLTGHKGYASSCQYVPDQETRL  173 (380)
T ss_dssp             CCEECTTS-SEEEECCSSSCCEEEECCCCSSC------------------CCSSTTCCBCCCCSSCCCCCBCCSSSSSCE
T ss_pred             EEEECCCC-CEEEEeeCCCcEEEEECCCCccc------------------cCCccceeeccCCCcceEEEEEecCCCCEE
Confidence            99999954 89999999999999999764311                  011112233456788899999999867789


Q ss_pred             EEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEECCC
Q 004745          201 LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       201 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ++|+.|++|++||+++++.+..+...               ...+|.. .|.+++|+| ++++|++|+.|+.|++||++.
T Consensus       174 ~s~s~D~~i~~wd~~~~~~~~~~~~~---------------~~~~h~~-~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~  237 (380)
T 3iz6_a          174 ITGSGDQTCVLWDVTTGQRISIFGSE---------------FPSGHTA-DVLSLSINSLNANMFISGSCDTTVRLWDLRI  237 (380)
T ss_dssp             EEECTTSCEEEECTTTCCEEEEECCC---------------SSSSCCS-CEEEEEECSSSCCEEEEEETTSCEEEEETTT
T ss_pred             EEECCCCcEEEEEcCCCcEEEEeecc---------------cCCCCcc-CeEEEEeecCCCCEEEEEECCCeEEEEECCC
Confidence            99999999999999987654333110               0134544 599999987 889999999999999999875


Q ss_pred             CCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHH
Q 004745          280 AGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEV  359 (732)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  359 (732)
                      ..                                                                              
T Consensus       238 ~~------------------------------------------------------------------------------  239 (380)
T 3iz6_a          238 TS------------------------------------------------------------------------------  239 (380)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             HhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhcc
Q 004745          360 LEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCL  439 (732)
Q Consensus       360 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (732)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (380)
T 3iz6_a          240 --------------------------------------------------------------------------------  239 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhc
Q 004745          440 DPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVD  519 (732)
Q Consensus       440 ~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~  519 (732)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (380)
T 3iz6_a          240 --------------------------------------------------------------------------------  239 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceee
Q 004745          520 FHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIK  599 (732)
Q Consensus       520 ~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~  599 (732)
                                                                                     +.++.+.||...++++.
T Consensus       240 ---------------------------------------------------------------~~~~~~~~h~~~v~~v~  256 (380)
T 3iz6_a          240 ---------------------------------------------------------------RAVRTYHGHEGDINSVK  256 (380)
T ss_dssp             ---------------------------------------------------------------CCCEEECCCSSCCCEEE
T ss_pred             ---------------------------------------------------------------cceEEECCcCCCeEEEE
Confidence                                                                           02234567777766666


Q ss_pred             ecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcc-------cEEEEeecCCCCeEEEecCCCcEEEEcCCCCCC
Q 004745          600 QASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEA-------VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVP  672 (732)
Q Consensus       600 ~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~-------~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~  672 (732)
                          |+|+|++|+||+.||+|+|||+.+++++..+..|..       .|++++|+|+|++|++++.||+|+|||+..++.
T Consensus       257 ----~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~  332 (380)
T 3iz6_a          257 ----FFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM  332 (380)
T ss_dssp             ----ECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE
T ss_pred             ----EecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce
Confidence                699999999999999999999999999999987643       499999999999999999999999999999887


Q ss_pred             cccc----CCCCCCCc-----hhHHHHHHHHHHHhhhcccccc
Q 004745          673 SIVS----GGAAGPDT-----ADVLEAMESNQRKLSRNREHSL  706 (732)
Q Consensus       673 ~~~~----~gh~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  706 (732)
                      +..+    .||.+++.     ++...+++.+.+...++|+...
T Consensus       333 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          333 VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             EEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            7665    68988874     4666788888899999998754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.7e-36  Score=322.85  Aligned_cols=346  Identities=12%  Similarity=0.056  Sum_probs=252.0

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004745           20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR   99 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~   99 (732)
                      ..+++++|+|++++|++|+.|+.|++||+.+++....+ ..| ..+....|+|+  +++|++|+.|+.|++||+.+.   
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~---  129 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-KRA-DYTAVDTAKLQ--MRRFILGTTEGDIKVLDSNFN---  129 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS-CSC-CEEEEEEECSS--SCEEEEEETTSCEEEECTTSC---
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE-ecC-CceEEEEEecC--CCEEEEEECCCCEEEEeCCCc---
Confidence            34558999999999999999999999999988776655 455 34445567888  589999999999999999853   


Q ss_pred             CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004745          100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  179 (732)
Q Consensus       100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (732)
                             .+...+.+|...|++++|+|++ ++|++++.|+.|++||+.+++..                         ..
T Consensus       130 -------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~-------------------------~~  176 (420)
T 3vl1_A          130 -------LQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNP-------------------------RT  176 (420)
T ss_dssp             -------EEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCC-------------------------EE
T ss_pred             -------ceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCc-------------------------eE
Confidence                   2356667999999999999954 89999999999999999887632                         11


Q ss_pred             CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccc--cc-cc-ccCCCccccEEEEE
Q 004745          180 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC--PM-HL-SEHGRSSLHLTHVT  255 (732)
Q Consensus       180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~-~~~~~~~~~i~~l~  255 (732)
                      ...|...|.+++|+|+ +.+|++++.|+.|++||+++.+.+..+.........+....  +. .. ....+ ...+++++
T Consensus       177 ~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~  254 (420)
T 3vl1_A          177 LIGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIS-TSKKNNLE  254 (420)
T ss_dssp             EECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGC-CCCCCTTC
T ss_pred             EcCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecc-cCcccceE
Confidence            2346779999999998 78999999999999999998876555432111000000000  00 00 00001 11355555


Q ss_pred             EcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHH
Q 004745          256 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRML  335 (732)
Q Consensus       256 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l  335 (732)
                      |+|++++|++++.||.|++||+.+++...                                                   
T Consensus       255 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~---------------------------------------------------  283 (420)
T 3vl1_A          255 FGTYGKYVIAGHVSGVITVHNVFSKEQTI---------------------------------------------------  283 (420)
T ss_dssp             SSCTTEEEEEEETTSCEEEEETTTCCEEE---------------------------------------------------
T ss_pred             EcCCCCEEEEEcCCCeEEEEECCCCceeE---------------------------------------------------
Confidence            66777777777777777777766522100                                                   


Q ss_pred             HHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHH
Q 004745          336 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY  415 (732)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (732)
                                                                                                      
T Consensus       284 --------------------------------------------------------------------------------  283 (420)
T 3vl1_A          284 --------------------------------------------------------------------------------  283 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccC
Q 004745          416 MSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEAN  495 (732)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  495 (732)
                                                                                                      
T Consensus       284 --------------------------------------------------------------------------------  283 (420)
T 3vl1_A          284 --------------------------------------------------------------------------------  283 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCCccccccCCCCC-CCCCCCCCCCCC
Q 004745          496 SDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSS-GSPSSSSQNDRI  574 (732)
Q Consensus       496 ~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~~~~  574 (732)
                                                                     .....|...|.+++|+|++. +|++++.++...
T Consensus       284 -----------------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~  316 (420)
T 3vl1_A          284 -----------------------------------------------QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLA  316 (420)
T ss_dssp             -----------------------------------------------EECCTTSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             -----------------------------------------------EcccccCCCceeEEEeCCCCCEEEEEeCCCeEE
Confidence                                                           00012445677889999998 888887777777


Q ss_pred             ccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcc---------cEEEEEecCcccEEEEe
Q 004745          575 PYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTG---------RLIKMLLGDEAVVNCVQ  645 (732)
Q Consensus       575 ~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg---------~~~~~l~gH~~~V~~v~  645 (732)
                      +|+.......+..+.+|....  +..+  +++++++|++|+.|++|++||+.+.         .....+.+|.+.|.+++
T Consensus       317 vwd~~~~~~~~~~~~~~~~~~--v~~~--~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  392 (420)
T 3vl1_A          317 QWDLRSPECPVGEFLINEGTP--INNV--YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFC  392 (420)
T ss_dssp             EEETTCTTSCSEEEEESTTSC--EEEE--EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEE
T ss_pred             EEEcCCCcCchhhhhccCCCC--ceEE--EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEE
Confidence            899887545688888854332  3333  3568999999999999999998874         33446778999999999


Q ss_pred             ecCCCC---eEEEecCCCcEEEEcCCC
Q 004745          646 CHPFDC---VVATSGIDNTIKIWTPSA  669 (732)
Q Consensus       646 fsp~~~---~l~S~s~D~~i~vW~~~~  669 (732)
                      |+|+++   .|+++|.+|.+++|++..
T Consensus       393 ~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          393 YVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             EccCCCCcceEEEEcCCceEEEEeccC
Confidence            999999   777888899999999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.8e-35  Score=308.81  Aligned_cols=217  Identities=8%  Similarity=0.061  Sum_probs=143.9

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCee----------EEEEccCCCcCeEEEEEe
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDT-------HINVWSYSSRKL----------LHSIETGHSANVFCTKFV   71 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg-------~i~vWd~~~~~~----------~~~~~~~h~~~V~~~~~s   71 (732)
                      ++.....-.-..||++++|+|||++||+|+.|.       .|++|++.....          ...+ .+|...|.+++++
T Consensus         4 m~~~~~~~~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l-~~~~~~v~s~~~~   82 (365)
T 4h5i_A            4 MKFVTASYNVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFAL-EDNDDSPTAIDAS   82 (365)
T ss_dssp             CCCCEEEEECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEEC-CTTSCCCCEEEEE
T ss_pred             ccceeeecCCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEc-cCCCCceEEEEeC
Confidence            344433333456999999999999999997643       599999875431          1223 6788899999886


Q ss_pred             cCCCCCEEEEE-----------ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEE--EEeCC
Q 004745           72 PETSDELVVSG-----------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW--SASED  138 (732)
Q Consensus        72 ~~~~g~~l~s~-----------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~--s~s~d  138 (732)
                      ++    .+++|           +.|+.+++|++......... ...........+...+.+++|+|++ ++++  +++.|
T Consensus        83 ~~----~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d  156 (365)
T 4h5i_A           83 KG----IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEF-LTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVP  156 (365)
T ss_dssp             TT----EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEE-EEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSS
T ss_pred             CC----EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEE-eeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCC
Confidence            54    55554           45778999998764322100 0000011122345568999999966 6654  44578


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      ++|++||+.+++..              ..+            .|...|.+++|+|+ +++|++++.+ .+++|+..+++
T Consensus       157 ~~i~iwd~~~~~~~--------------~~~------------~~~~~V~~v~fspd-g~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          157 AIMRIIDPSDLTEK--------------FEI------------ETRGEVKDLHFSTD-GKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             CEEEEEETTTTEEE--------------EEE------------ECSSCCCEEEECTT-SSEEEEECSS-CEEEEETTTCC
T ss_pred             CEEEEeECCCCcEE--------------EEe------------CCCCceEEEEEccC-CceEEeccce-eEEEEEeccCc
Confidence            99999999887521              111            13447999999999 7899998754 56777776654


Q ss_pred             CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCC----eEEEEECCC
Q 004745          219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE----HVYLMDVNH  279 (732)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg----~v~iwd~~~  279 (732)
                      .+....                  ..+|.. .|.+++|+|+++++++++.|+    .+++|++..
T Consensus       209 ~~~~~~------------------~~~~~~-~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~  254 (365)
T 4h5i_A          209 CIARKT------------------DFDKNW-SLSKINFIADDTVLIAASLKKGKGIVLTKISIKS  254 (365)
T ss_dssp             EEEEEC------------------CCCTTE-EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred             ceeeee------------------cCCCCC-CEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence            322110                  033444 599999999999999999876    466666554

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.3e-34  Score=306.27  Aligned_cols=230  Identities=13%  Similarity=0.191  Sum_probs=177.0

Q ss_pred             hccccEeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEc------------cCCCcCeEEEEEecCC
Q 004745            8 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE------------TGHSANVFCTKFVPET   74 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~------------~~h~~~V~~~~~s~~~   74 (732)
                      ..+....+++|.++|++++|+| ++++||+|+.||.|+|||+.+++....+.            .+|...|.+++|+|+.
T Consensus        32 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  111 (408)
T 4a11_B           32 LNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD  111 (408)
T ss_dssp             ECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred             cCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC
Confidence            3456778889999999999999 99999999999999999999876655442            2599999999999953


Q ss_pred             CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC--cEEEEEeCCCcEEEEECCCCCCC
Q 004745           75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSC  152 (732)
Q Consensus        75 ~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~~l~s~s~dg~i~vwd~~~~~~~  152 (732)
                       +.+|++++.|+.|++||+.+..          ++..+ .+...+.++.++|.+.  .++++++.|+.|++||+++++..
T Consensus       112 -~~~l~s~~~d~~i~iwd~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  179 (408)
T 4a11_B          112 -TGMFTSSSFDKTLKVWDTNTLQ----------TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS  179 (408)
T ss_dssp             -TTCEEEEETTSEEEEEETTTTE----------EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred             -CcEEEEEeCCCeEEEeeCCCCc----------cceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence             5899999999999999998642          23333 3778899999998542  49999999999999999887632


Q ss_pred             CCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC-CcccccCCCCCC
Q 004745          153 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPP  231 (732)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~~~  231 (732)
                                               .....|...|.+++|+|++..+|++|+.||.|++||+++... +..+....... 
T Consensus       180 -------------------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-  233 (408)
T 4a11_B          180 -------------------------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK-  233 (408)
T ss_dssp             -------------------------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS-
T ss_pred             -------------------------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc-
Confidence                                     122346678999999999555799999999999999987652 22221100000 


Q ss_pred             ccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                          .........+|.. .|++++|+|++++|++++.||.|++||+.++
T Consensus       234 ----~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  277 (408)
T 4a11_B          234 ----SQAVESANTAHNG-KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG  277 (408)
T ss_dssp             ----CCCTTTSSCSCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ----ceeeccccccccC-ceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence                0000000123444 6999999999999999999999999999884

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=7.2e-35  Score=316.10  Aligned_cols=229  Identities=19%  Similarity=0.340  Sum_probs=177.2

Q ss_pred             ccEeeeccCCce-eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           11 QERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        11 ~~~~l~~h~~~V-~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      ....+.+|...| .++.+  ++++|++|+.||+|++||+.+++.+..+ .+|.+.|.+++|+|+   .+|++|+.||+|+
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~---~~l~s~s~dg~i~  186 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG---GILVSGSTDRTVR  186 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECST---TEEEEEETTSCEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcCC---CEEEEEeCCCCEE
Confidence            456899999885 66666  5679999999999999999999999999 799999999999998   4999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEec-CCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      +||++++          .++..+.+|...|.+++|++ .++.++++++.||.|++||+++.............  .....
T Consensus       187 vwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~  254 (464)
T 3v7d_B          187 VWDIKKG----------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY--PLVFH  254 (464)
T ss_dssp             EEETTTT----------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS--SEEES
T ss_pred             EEECCCC----------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc--ceEee
Confidence            9999864          23678889999999999996 24589999999999999999987644222111111  01111


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                      ........+....+|...+.++.  ++ +.++++|+.|+.|++||+++.+.+..+                    .+|..
T Consensus       255 ~~~~~~~~~~~~~~~~~~v~~~~--~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~--------------------~~~~~  311 (464)
T 3v7d_B          255 TPEENPYFVGVLRGHMASVRTVS--GH-GNIVVSGSYDNTLIVWDVAQMKCLYIL--------------------SGHTD  311 (464)
T ss_dssp             CGGGCTTEEEEECCCSSCEEEEE--EE-TTEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS
T ss_pred             ccCCCeEEEEEccCccceEEEEc--CC-CCEEEEEeCCCeEEEEECCCCcEEEEe--------------------cCCCC
Confidence            11111112233456677787774  44 679999999999999999987654433                    44555


Q ss_pred             ccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                       .|++++|+|++++|++++.||.|++||+.+++
T Consensus       312 -~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          312 -RIYSTIYDHERKRCISASMDTTIRIWDLENGE  343 (464)
T ss_dssp             -CEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             -CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence             59999999999999999999999999998843

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7e-35  Score=301.01  Aligned_cols=207  Identities=17%  Similarity=0.220  Sum_probs=171.8

Q ss_pred             eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEE---ccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004745           16 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN   92 (732)
Q Consensus        16 ~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~---~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd   92 (732)
                      ..|..+|++++|+|++ .|++|+.||+|+|||+.+++.+..+   ..+|.+.|++++|+|+  |++|++|+.|++|++||
T Consensus        79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--g~~l~sgs~d~~i~iwd  155 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--GTQAVSGSKDICIKVWD  155 (344)
T ss_dssp             EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEE
T ss_pred             eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEE
Confidence            3467889999999985 6889999999999999988755433   2489999999999999  59999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004745           93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                      +.++          .++..+.+|...|++++|+|++..+|++++.|++|++||+++++...                   
T Consensus       156 ~~~~----------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-------------------  206 (344)
T 4gqb_B          156 LAQQ----------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS-------------------  206 (344)
T ss_dssp             TTTT----------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE-------------------
T ss_pred             CCCC----------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceee-------------------
Confidence            9864          34788999999999999999887899999999999999999876320                   


Q ss_pred             ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004745          173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  252 (732)
Q Consensus       173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (732)
                          ......+...+.+++|+|+++++|++|+.||.|++||+++++.+..+                    .+|.. .|+
T Consensus       207 ----~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--------------------~~h~~-~v~  261 (344)
T 4gqb_B          207 ----QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS--------------------AVHSQ-CVT  261 (344)
T ss_dssp             ----ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--------------------ECCSS-CEE
T ss_pred             ----eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE--------------------cCCCC-CEE
Confidence                11112334478999999987889999999999999999988765544                    55665 599


Q ss_pred             EEEEcCCC-CEEEEEecCCeEEEEECCC
Q 004745          253 HVTFSPNG-EEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       253 ~l~~sp~g-~~l~~~~~dg~v~iwd~~~  279 (732)
                      +++|+|++ ++|++++.|++|+|||+.+
T Consensus       262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~  289 (344)
T 4gqb_B          262 GLVFSPHSVPFLASLSEDCSLAVLDSSL  289 (344)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred             EEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence            99999998 5789999999999998766

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.8e-35  Score=341.78  Aligned_cols=470  Identities=13%  Similarity=0.089  Sum_probs=330.1

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      .+.+.++.+.+|..+|++++|+|++++|++|+.||.|+|||+.+++.+..+ .+|...|.+++|+|+  +.+|++++.||
T Consensus        43 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~~dg  119 (814)
T 3mkq_A           43 ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPT--KPYVLSGSDDL  119 (814)
T ss_dssp             TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSS--SSEEEEEETTS
T ss_pred             CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCC--CCEEEEEcCCC
Confidence            456778899999999999999999999999999999999999999999998 799999999999999  58999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      .|++||+.+..         .....+.+|...|.+++|+|.+++.|++++.||.|++||+.++...              
T Consensus       120 ~i~vw~~~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~--------------  176 (814)
T 3mkq_A          120 TVKLWNWENNW---------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN--------------  176 (814)
T ss_dssp             EEEEEEGGGTS---------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS--------------
T ss_pred             EEEEEECCCCc---------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce--------------
Confidence            99999998632         2356788899999999999955589999999999999999776532              


Q ss_pred             eeccCCccccccCCCCCccceEEEEecC--CCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                                ......+...+.+++|+|  + +.+|++++.||.|++||+++.+.+..+                    .
T Consensus       177 ----------~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~--------------------~  225 (814)
T 3mkq_A          177 ----------FTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATL--------------------E  225 (814)
T ss_dssp             ----------EEEECCCTTCCCEEEECCSTT-CCEEEEECTTSEEEEEETTTTEEEEEE--------------------E
T ss_pred             ----------eEEecCCCCCEEEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcEEEEE--------------------c
Confidence                      000112335788999999  6 789999999999999999877544333                    3


Q ss_pred             CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCc---------------cCCC
Q 004745          245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL---------------ELQP  309 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~  309 (732)
                      +|.. .|++++|+|++++|++++.||.|++||+.+++.......+...+..++|+|.....               ....
T Consensus       226 ~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          226 GHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE  304 (814)
T ss_dssp             CCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred             CCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence            3444 59999999999999999999999999999877666666666677777777764422               2233


Q ss_pred             CCCccCCCccccccccccCcchhhH---------HHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHH
Q 004745          310 PIHDFLQTNIRVRGEVATGLGKCRM---------LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRA  380 (732)
Q Consensus       310 ~~~~~~~~g~~~~~~~~~~~d~~~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  380 (732)
                      ..+.++|+|..++   ++..+....         .+.............         .+..+...              
T Consensus       305 ~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~--------------  358 (814)
T 3mkq_A          305 PTLSLDPVGKLVW---SGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTK---------ELGSVDVF--------------  358 (814)
T ss_dssp             CCEEECSSSEEEE---ECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCE---------EECCCSSC--------------
T ss_pred             ceeEECCCCCEEE---ECcccccceeeeeeecccccccccCccceeeee---------cCCCCccC--------------
Confidence            4556677777766   322221100         000000000000000         00000000              


Q ss_pred             HHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHH
Q 004745          381 ALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAA  460 (732)
Q Consensus       381 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~  460 (732)
                                                                           +..++++|+           ++.++++
T Consensus       359 -----------------------------------------------------~~~~~~spd-----------g~~la~~  374 (814)
T 3mkq_A          359 -----------------------------------------------------PQSLAHSPN-----------GRFVTVV  374 (814)
T ss_dssp             -----------------------------------------------------CSEEEECTT-----------SSEEEEE
T ss_pred             -----------------------------------------------------CceeEECCC-----------CCEEEEe
Confidence                                                                 112233443           2233333


Q ss_pred             HhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCC
Q 004745          461 ETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS  540 (732)
Q Consensus       461 ~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~  540 (732)
                      + ++.+.+|+.........|.           -..++|+||+                  +.+++++.++.+++|.    
T Consensus       375 ~-~~~~~i~~~~~~~~~~~~~-----------i~~~~~spdg------------------~~la~~~~~g~v~l~~----  420 (814)
T 3mkq_A          375 G-DGEYVIYTALAWRNKAFGK-----------CQDFVWGPDS------------------NSYALIDETGQIKYYK----  420 (814)
T ss_dssp             E-TTEEEEEETTTTEEEEEEE-----------CSEEEECTTS------------------SCEEEECTTCCEEEEE----
T ss_pred             c-CCEEEEEECccccccCCCc-----------eEEEEEeCCC------------------CeEEEEeCCCcEEEEE----
Confidence            3 4444444411100000011           1157788888                  8999999999999995    


Q ss_pred             cceeeccCCCCccccccCCCC---CCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEe---
Q 004745          541 LNVRIHRRGDSARETVDANGS---SGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASG---  614 (732)
Q Consensus       541 ~~~~~~~~~~~v~~~~~s~d~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasg---  614 (732)
                         .+.+|...+.+++|+||+   +.|++++.++...+|+..+ .+.+..+.+|..   .+.    |||||++||++   
T Consensus       421 ---~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~---~v~----~s~dg~~la~~~~~  489 (814)
T 3mkq_A          421 ---NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDN-GTLVRRIDVNAK---DVI----WSDNGELVMIVNTN  489 (814)
T ss_dssp             ---TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTT-CCEEEEESSCEE---EEE----ECTTSSEEEEEECC
T ss_pred             ---CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCc-CcEEEEEecCCC---EEE----EcCCCCEEEEEEcC
Confidence               356777889999999999   7888887677777799877 778889998875   254    79999999999   


Q ss_pred             ---cCCCcEEEEE-----------------------------------------------cCccc-------EEEEEecC
Q 004745          615 ---SDDGRWFIWE-----------------------------------------------KQTGR-------LIKMLLGD  637 (732)
Q Consensus       615 ---s~Dg~i~iWd-----------------------------------------------~~tg~-------~~~~l~gH  637 (732)
                         +.+..+.+|.                                               ...++       ....+...
T Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~~~~~~~  569 (814)
T 3mkq_A          490 SNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAHY  569 (814)
T ss_dssp             CSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEEEEETTEEEEEEEC
T ss_pred             cccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEEeCCEEEEEcCCCeEEEEeCCeeEEEEEC
Confidence               6555544443                                               10111       11222334


Q ss_pred             cccEEEEeecCCCCeEEEecCCCcEEEEcCCC
Q 004745          638 EAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA  669 (732)
Q Consensus       638 ~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~  669 (732)
                      ...+..+.|.+++..|+....++.+++|++..
T Consensus       570 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~  601 (814)
T 3mkq_A          570 TKEMYLLGYLARDNKVYLADREVHVYGYEISL  601 (814)
T ss_dssp             SSCCEEEEEEGGGTEEEEECTTCCEEEEECCH
T ss_pred             CccEEEEEEEecCCEEEEEcCCCCEEEEEECc
Confidence            55666777888888888888889999998653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4e-36  Score=312.98  Aligned_cols=198  Identities=12%  Similarity=0.136  Sum_probs=126.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC------CCcEEEEEcCCCC
Q 004745           24 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG------DAEVRLFNLSRFS   97 (732)
Q Consensus        24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~------dg~i~vwd~~~~~   97 (732)
                      .+.+.+++.++. ++.+.....|++....    . ..|+..|++++|+|+  |.+|++|+.      |+.|++|+..+..
T Consensus        10 g~d~g~~~~~~~-~~g~~~~~~w~~p~~~----p-~~H~~~V~~v~fSpD--G~~las~s~d~~~~wd~~v~~~~~~~~~   81 (357)
T 4g56_B           10 GVDLGTENLYFQ-SNGSSKGSAWGRPVTA----P-ACMEVQIGAVRYRRD--GALLLAASSLSSRTWGGSIWVFKDPEGA   81 (357)
T ss_dssp             ------------------------------------CCCSEEEEEEECSS--SCEEEEEECSSSSSCCEEEEEESSCC--
T ss_pred             CCCCCccceEEe-cCCCccccccCCCCCC----c-ccccCCEEEEEECCC--CCEEEEEcCCCCccccCeEEEEECCCCC
Confidence            445555555544 4456778999875432    2 479999999999999  699999997      7789999887543


Q ss_pred             CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004745           98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  177 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (732)
                      ...      .......+|...|++++|+|++  .+++++.||.|++||+.+++.....                     .
T Consensus        82 ~~~------~~~~~~~~~~~~V~~~~~s~d~--~~l~~s~dg~v~lWd~~~~~~~~~~---------------------~  132 (357)
T 4g56_B           82 PNE------SLCTAGVQTEAGVTDVAWVSEK--GILVASDSGAVELWEILEKESLLVN---------------------K  132 (357)
T ss_dssp             -CG------GGCSEEEECSSCEEEEEEETTT--EEEEEETTSCEEEC--------CCC---------------------C
T ss_pred             cce------eEecccCCCCCCEEEEEEcCCC--CEEEEECCCEEEEeeccccceeEEE---------------------e
Confidence            221      2234456788999999999954  4567889999999999887632100                     0


Q ss_pred             cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004745          178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  257 (732)
Q Consensus       178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  257 (732)
                      ....+|...|++++|+|+ +++|++|+.|+.|++||+++.+.+..+                    .+|.. .|++++|+
T Consensus       133 ~~~~~h~~~V~~v~~spd-g~~l~sgs~dg~v~iwd~~~~~~~~~~--------------------~~h~~-~v~~v~~s  190 (357)
T 4g56_B          133 FAKYEHDDIVKTLSVFSD-GTQAVSGGKDFSVKVWDLSQKAVLKSY--------------------NAHSS-EVNCVAAC  190 (357)
T ss_dssp             EEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEEEC
T ss_pred             eccCCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEE--------------------cCCCC-CEEEEEEc
Confidence            112356779999999999 789999999999999999987654433                    45555 59999999


Q ss_pred             CCCC-EEEEEecCCeEEEEECCCC
Q 004745          258 PNGE-EVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       258 p~g~-~l~~~~~dg~v~iwd~~~~  280 (732)
                      |++. ++++++.||.|++||++++
T Consensus       191 ~~~~~~~~s~~~dg~v~~wd~~~~  214 (357)
T 4g56_B          191 PGKDTIFLSCGEDGRILLWDTRKP  214 (357)
T ss_dssp             TTCSSCEEEEETTSCEEECCTTSS
T ss_pred             cCCCceeeeeccCCceEEEECCCC
Confidence            9885 7889999999999998873

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.3e-34  Score=306.20  Aligned_cols=200  Identities=19%  Similarity=0.292  Sum_probs=158.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc-cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004745           21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR   99 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~-~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~   99 (732)
                      .++.|+||++ ++||+|. |++|+|||+.+++++..+. .+|...|++++|+|+  |++|++|+.||+|+|||+.++   
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd--g~~lasgs~Dg~v~iWd~~~~---  179 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ---  179 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSCEEEEETTTT---
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC--CCEEEEEECCCeEEEEEcCCC---
Confidence            4678999975 5787775 8999999999998877652 467888999999999  599999999999999999864   


Q ss_pred             CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004745          100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  179 (732)
Q Consensus       100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (732)
                             .++..+.+|...+.++.+++   .++++|+.|+.+++||.......                        +..
T Consensus       180 -------~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~------------------------~~~  225 (420)
T 4gga_A          180 -------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHH------------------------VAT  225 (420)
T ss_dssp             -------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE------------------------EEE
T ss_pred             -------cEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeeccccee------------------------eEE
Confidence                   33788899999999998854   79999999999999998775421                        122


Q ss_pred             CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC
Q 004745          180 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  259 (732)
Q Consensus       180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~  259 (732)
                      ..+|...+..+.++|+ +.++++++.|+.|++||..+.+.....         +...       ..|.. .|.+++|+|.
T Consensus       226 ~~~h~~~~~~~~~~~~-g~~l~s~~~D~~v~i~~~~~~~~~~~~---------~~~~-------~~~~~-~V~~~~~~p~  287 (420)
T 4gga_A          226 LSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVP---------LQTF-------TQHQG-AVKAVAWCPW  287 (420)
T ss_dssp             EECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCCSSCSCC---------SEEE-------CCCSS-CEEEEEECTT
T ss_pred             ecccccceeeeeecCC-CCeeeeeeccccceEEeecccccccee---------eeee-------cccCC-ceeeeeeCCC
Confidence            2356668999999999 789999999999999999876532211         0111       23444 5999999996


Q ss_pred             CC-EEEEE--ecCCeEEEEECCC
Q 004745          260 GE-EVLLS--YSGEHVYLMDVNH  279 (732)
Q Consensus       260 g~-~l~~~--~~dg~v~iwd~~~  279 (732)
                      +. .++++  +.|+.|++||+.+
T Consensus       288 ~~~~la~~~gs~D~~I~iwd~~t  310 (420)
T 4gga_A          288 QSNVLATGGGTSDRHIRIWNVCS  310 (420)
T ss_dssp             CTTEEEEEECTTTCEEEEEETTT
T ss_pred             cccEEEEEeecCCCEEEEEeCCc
Confidence            64 55554  4699999999887

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.3e-35  Score=305.79  Aligned_cols=173  Identities=15%  Similarity=0.214  Sum_probs=139.6

Q ss_pred             eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcE
Q 004745           52 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  131 (732)
Q Consensus        52 ~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  131 (732)
                      +....+ .+|...|++++|+|+  +.+|+||+.|++|++||..+..          ....+..|...|.+++|+|++ .+
T Consensus        55 ~~~~~l-~gH~~~V~~~~~s~d--~~~l~s~s~Dg~v~vWd~~~~~----------~~~~~~~~~~~v~~~~~sp~g-~~  120 (354)
T 2pbi_B           55 KTRRTL-KGHGNKVLCMDWCKD--KRRIVSSSQDGKVIVWDSFTTN----------KEHAVTMPCTWVMACAYAPSG-CA  120 (354)
T ss_dssp             CEEEEE-ECCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTCC----------EEEEEECSSSCCCEEEECTTS-SE
T ss_pred             EEEEEe-cCCCCeEEEEEECCC--CCEEEEEeCCCeEEEEECCCCC----------cceEEecCCCCEEEEEECCCC-CE
Confidence            455666 799999999999999  5999999999999999987642          256677788999999999955 89


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEE
Q 004745          132 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  211 (732)
Q Consensus       132 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~i  211 (732)
                      |++++.|+.+++|++........                   .........|...|.++.|+|+ +..|++++.|++|++
T Consensus       121 lasg~~d~~i~v~~~~~~~~~~~-------------------~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~l  180 (354)
T 2pbi_B          121 IACGGLDNKCSVYPLTFDKNENM-------------------AAKKKSVAMHTNYLSACSFTNS-DMQILTASGDGTCAL  180 (354)
T ss_dssp             EEEESTTSEEEEEECCCCTTCCS-------------------GGGCEEEEECSSCEEEEEECSS-SSEEEEEETTSEEEE
T ss_pred             EEEeeCCCCEEEEEEeccccccc-------------------cccceeeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEE
Confidence            99999999999999876532100                   0011112246678999999998 789999999999999


Q ss_pred             EECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC--CCCEEEEEecCCeEEEEECCC
Q 004745          212 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       212 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ||+++++.+..+                    .+|.. .|.+++|+|  +|++|++|+.||.|++||+++
T Consensus       181 wd~~~~~~~~~~--------------------~~h~~-~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~  229 (354)
T 2pbi_B          181 WDVESGQLLQSF--------------------HGHGA-DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS  229 (354)
T ss_dssp             EETTTCCEEEEE--------------------ECCSS-CEEEEEECCCSSCCEEEEEETTSCEEEEETTT
T ss_pred             EeCCCCeEEEEE--------------------cCCCC-CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence            999987655443                    45555 599999988  578999999999999999877

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=308.69  Aligned_cols=176  Identities=20%  Similarity=0.232  Sum_probs=138.5

Q ss_pred             CeeEEEEccCCCc-CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC
Q 004745           51 RKLLHSIETGHSA-NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP  129 (732)
Q Consensus        51 ~~~~~~~~~~h~~-~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  129 (732)
                      .+++.++ .+|.. .|.+++|+|+  |++|++|+.|++|+|||+......+       ......+|...|.+++|+|++ 
T Consensus         5 ~~~~~~~-~~h~~~~v~~l~~sp~--g~~las~~~D~~i~iw~~~~~~~~~-------~~~~~~~h~~~v~~~~~sp~g-   73 (345)
T 3fm0_A            5 LVLLGRV-PAHPDSRCWFLAWNPA--GTLLASCGGDRRIRIWGTEGDSWIC-------KSVLSEGHQRTVRKVAWSPCG-   73 (345)
T ss_dssp             EEEEEEE-CCSTTSCEEEEEECTT--SSCEEEEETTSCEEEEEEETTEEEE-------EEEECSSCSSCEEEEEECTTS-
T ss_pred             EEEeeee-cCCCCCcEEEEEECCC--CCEEEEEcCCCeEEEEEcCCCccee-------eeeeccccCCcEEEEEECCCC-
Confidence            3456677 68887 9999999999  5999999999999999998532110       012336899999999999954 


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeE
Q 004745          130 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  209 (732)
Q Consensus       130 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v  209 (732)
                      ++|++++.|+.|++||+.....                       ..+....+|...|.+++|+|+ +++|++|+.|+.|
T Consensus        74 ~~l~s~s~D~~v~iw~~~~~~~-----------------------~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v  129 (345)
T 3fm0_A           74 NYLASASFDATTCIWKKNQDDF-----------------------ECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSV  129 (345)
T ss_dssp             SEEEEEETTSCEEEEEECCC-E-----------------------EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred             CEEEEEECCCcEEEEEccCCCe-----------------------EEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeE
Confidence            8999999999999999876531                       012233467779999999998 8899999999999


Q ss_pred             EEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          210 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       210 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ++||++......          ++..+       .+|.. .|.+++|+|++++|++++.|+.|++||+.+
T Consensus       130 ~iwd~~~~~~~~----------~~~~~-------~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~  181 (345)
T 3fm0_A          130 WVWEVDEEDEYE----------CVSVL-------NSHTQ-DVKHVVWHPSQELLASASYDDTVKLYREEE  181 (345)
T ss_dssp             EEEEECTTSCEE----------EEEEE-------CCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEEET
T ss_pred             EEEECCCCCCeE----------EEEEe-------cCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEecC
Confidence            999998754321          11111       34554 599999999999999999999999998765

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-35  Score=312.18  Aligned_cols=230  Identities=12%  Similarity=0.089  Sum_probs=168.7

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~--~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      ...++.|.++|++++|+|++++||+|+.|+.|+|||+.++  +.+..+ .+|...|.+++|+|+  +++|++++.|++|+
T Consensus         4 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~s~d~~v~   80 (377)
T 3dwl_C            4 SQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPK--SNRIVTCSQDRNAY   80 (377)
T ss_dssp             EEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTT--TCCEEEEETTSSEE
T ss_pred             ceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCC--CCEEEEEeCCCeEE
Confidence            3455667899999999999999999999999999999988  677777 799999999999999  58999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  169 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  169 (732)
                      +||+.+...       ..+...+.+|...|.+++|+|+ +++|++++.|+.|++||+++++...                
T Consensus        81 vwd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~----------------  136 (377)
T 3dwl_C           81 VYEKRPDGT-------WKQTLVLLRLNRAATFVRWSPN-EDKFAVGSGARVISVCYFEQENDWW----------------  136 (377)
T ss_dssp             EC------C-------CCCEEECCCCSSCEEEEECCTT-SSCCEEEESSSCEEECCC-----CC----------------
T ss_pred             EEEcCCCCc-------eeeeeEecccCCceEEEEECCC-CCEEEEEecCCeEEEEEECCcccce----------------
Confidence            999987431       1236677889999999999995 4899999999999999998875210                


Q ss_pred             cCCccccccCCCC-CccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          170 RCGAKRSLADPPK-QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       170 ~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                            ....... |...|.+++|+|+ +.+|++++.|+.|++||++............ .............  .+|..
T Consensus       137 ------~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~  206 (377)
T 3dwl_C          137 ------VSKHLKRPLRSTILSLDWHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASV-WGSRLPFNTVCAE--YPSGG  206 (377)
T ss_dssp             ------CCEEECSSCCSCEEEEEECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCS-SCSCCCEEEEEEC--CCCSS
T ss_pred             ------eeeEeecccCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEEEecccCCCccccc-cccccchhhhhhc--ccCCc
Confidence                  0111122 6679999999998 7899999999999999997543221110000 0000000000000  13444


Q ss_pred             ccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                       .|++++|+|++++|++++.||.|++||+.+
T Consensus       207 -~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          207 -WVHAVGFSPSGNALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             -SEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred             -eEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence             699999999999999999999999999987

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=290.03  Aligned_cols=211  Identities=19%  Similarity=0.284  Sum_probs=161.0

Q ss_pred             cccEeeecc--CC--ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc-cCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745           10 SQERELEGH--QG--CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus        10 ~~~~~l~~h--~~--~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~-~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      .+.+.|.+.  .+  .+++|+||+++ +||+|. |++|+|||+.+++++..+. .+|...|++++|+|+  +++|++|+.
T Consensus        12 ~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~--~~~l~sgs~   87 (318)
T 4ggc_A           12 LPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTS   87 (318)
T ss_dssp             SCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEET
T ss_pred             CCCEEeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC--CCEEEEEEC
Confidence            345566542  22  35789999986 777764 8999999999999887762 468888999999999  599999999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      ||+|++||++++          +++..+.+|...+.++.+.+   .++++++.++.+++|+.......            
T Consensus        88 Dg~v~iw~~~~~----------~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~------------  142 (318)
T 4ggc_A           88 SAEVQLWDVQQQ----------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHH------------  142 (318)
T ss_dssp             TSEEEEEETTTT----------EEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE------------
T ss_pred             CCcEEEeecCCc----------eeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCcee------------
Confidence            999999999874          33788889999988877653   78999999999999998776521            


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                                  +....+|...+..+.+.++ +++|++++.|+.|++||+++++......         ...       .
T Consensus       143 ------------~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~-------~  193 (318)
T 4ggc_A          143 ------------VATLSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPL---------QTF-------T  193 (318)
T ss_dssp             ------------EEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCBTTBSCCS---------EEE-------C
T ss_pred             ------------EEEEcCccCceEEEEEcCC-CCEEEEEecCcceeEEECCCCcccccce---------eee-------c
Confidence                        1222346668899999998 7899999999999999998765432210         000       2


Q ss_pred             CCccccEEEEEEcCCCCEE---EEEecCCeEEEEECCC
Q 004745          245 GRSSLHLTHVTFSPNGEEV---LLSYSGEHVYLMDVNH  279 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g~~l---~~~~~dg~v~iwd~~~  279 (732)
                      .+.. .|..++++|++..+   ++++.++.|++||...
T Consensus       194 ~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~  230 (318)
T 4ggc_A          194 QHQG-AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS  230 (318)
T ss_dssp             CCCS-CEEEEEECTTSTTEEEEEECTTTCEEEEEETTT
T ss_pred             ccCC-ceEEEEecCCCCcEEEEEecCCCCEEEEEeccc
Confidence            2333 59999999976533   3445689999999776

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.6e-34  Score=301.97  Aligned_cols=201  Identities=18%  Similarity=0.258  Sum_probs=162.1

Q ss_pred             eccCCcee--EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004745           16 EGHQGCVN--AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL   93 (732)
Q Consensus        16 ~~h~~~V~--~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~   93 (732)
                      .+|...+.  +++|++  ..+++++.|+.|++||+.+++....+...|...|.+++|+|+  +.+|++|+.||.|++||+
T Consensus        88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~  163 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHD--GSFLSVGLGNGLVDIYDV  163 (401)
T ss_dssp             TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT--SSEEEEEETTSCEEEEET
T ss_pred             CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC--CCEEEEECCCCeEEEEEC
Confidence            36766544  466664  568888899999999999999888885568999999999998  589999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745           94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                      .+.          ..+..+.+|...|.+++|++   ++|++++.||.|++||++.....                     
T Consensus       164 ~~~----------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~---------------------  209 (401)
T 4aez_A          164 ESQ----------TKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQ---------------------  209 (401)
T ss_dssp             TTC----------CEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE---------------------
T ss_pred             cCC----------eEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcce---------------------
Confidence            864          33678889999999999953   79999999999999999854321                     


Q ss_pred             cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004745          174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  253 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (732)
                         +.....|...|.+++|+|+ +.+|++|+.|+.|++||+++.+.+..+                    .+|.. .|.+
T Consensus       210 ---~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~--------------------~~~~~-~v~~  264 (401)
T 4aez_A          210 ---IGTLQGHSSEVCGLAWRSD-GLQLASGGNDNVVQIWDARSSIPKFTK--------------------TNHNA-AVKA  264 (401)
T ss_dssp             ---EEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTCSSEEEEE--------------------CCCSS-CCCE
T ss_pred             ---eeEEcCCCCCeeEEEEcCC-CCEEEEEeCCCeEEEccCCCCCccEEe--------------------cCCcc-eEEE
Confidence               1122346678999999998 889999999999999999986544332                    33444 5999


Q ss_pred             EEEcCCCC-EEEEEe--cCCeEEEEECCC
Q 004745          254 VTFSPNGE-EVLLSY--SGEHVYLMDVNH  279 (732)
Q Consensus       254 l~~sp~g~-~l~~~~--~dg~v~iwd~~~  279 (732)
                      ++|+|++. ++++++  .|+.|++||+.+
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~  293 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAAT  293 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence            99999775 555554  699999999887

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-35  Score=317.21  Aligned_cols=316  Identities=12%  Similarity=0.125  Sum_probs=239.6

Q ss_pred             CCcCeEEEEEecCCCCCEEEEE----------ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCc
Q 004745           61 HSANVFCTKFVPETSDELVVSG----------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH  130 (732)
Q Consensus        61 h~~~V~~~~~s~~~~g~~l~s~----------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  130 (732)
                      +...|.+++|+|++ ..+|+++          +.|+.|++||+.+....       .++..+ .|...|++++|+|++ .
T Consensus        11 ~~~~v~~~~~sp~g-~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-------~~~~~~-~~~~~v~~~~~s~~~-~   80 (416)
T 2pm9_A           11 EFSRTATFAWSHDK-IPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-------KPIASL-QVDSKFNDLDWSHNN-K   80 (416)
T ss_dssp             EEEESCBCCBCSSS-SCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-------SCSCCC-CCSSCEEEEEECSSS-S
T ss_pred             hhhhcceEeeCCCC-CCEEEEEecCcccccccCCCCeEEEEEccCCCCC-------cEEEEE-ecCCceEEEEECCCC-C
Confidence            33568899999994 2499999          88999999999864321       123333 588999999999954 8


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004745          131 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  210 (732)
Q Consensus       131 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~  210 (732)
                      +|++++.||.|++||+......                     ...+.....|...|.+++|+|+++.+|++++.|+.|+
T Consensus        81 ~l~~~~~dg~v~vw~~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~  139 (416)
T 2pm9_A           81 IIAGALDNGSLELYSTNEANNA---------------------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF  139 (416)
T ss_dssp             CEEEEESSSCEEEECCSSTTSC---------------------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred             eEEEEccCCeEEEeeccccccc---------------------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence            9999999999999999873210                     0012233457779999999998678999999999999


Q ss_pred             EEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC-CCEEEEEecCCeEEEEECCCCCCcceeeec
Q 004745          211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHAGGRAMRYTV  289 (732)
Q Consensus       211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  289 (732)
                      +||+++.+......         ..+.....  .+|.. .|++++|+|+ +.+|++++.||.|++||+.+++....+.. 
T Consensus       140 iwd~~~~~~~~~~~---------~~~~~~~~--~~~~~-~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-  206 (416)
T 2pm9_A          140 IWDMNKCTESPSNY---------TPLTPGQS--MSSVD-EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY-  206 (416)
T ss_dssp             BCBTTTTSSCTTTC---------CCBCCCCS--CCSSC-CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC-
T ss_pred             EEECCCCccccccc---------cccccccc--cCCCC-CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec-
Confidence            99998765211000         00000000  23444 5999999999 78999999999999999987321100000 


Q ss_pred             CCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCC
Q 004745          290 GDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP  369 (732)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  369 (732)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (416)
T 2pm9_A          207 --------------------------------------------------------------------------------  206 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHH
Q 004745          370 MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK  449 (732)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  449 (732)
                                                                                             +        
T Consensus       207 -----------------------------------------------------------------------~--------  207 (416)
T 2pm9_A          207 -----------------------------------------------------------------------T--------  207 (416)
T ss_dssp             -----------------------------------------------------------------------C--------
T ss_pred             -----------------------------------------------------------------------c--------
Confidence                                                                                   0        


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCC
Q 004745          450 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEG  529 (732)
Q Consensus       450 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d  529 (732)
                                                                                                      
T Consensus       208 --------------------------------------------------------------------------------  207 (416)
T 2pm9_A          208 --------------------------------------------------------------------------------  207 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCcceeeccCCCCccccccCCCC-CCCCCCCCCC---CCCccccccccccceeEe-eeccccceeeecccc
Q 004745          530 RDVEANFLHGSLNVRIHRRGDSARETVDANGS-SGSPSSSSQN---DRIPYQPETVIDMKQRYV-GHCNVGTDIKQASFL  604 (732)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~---~~~~~~~~~~~~~~~~~~-gh~~~~~~i~~~~f~  604 (732)
                                   ....+|...|.+++|+|++ .+|++++.++   ...+|+.....+..+.+. +|...++++.    |
T Consensus       208 -------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~----~  270 (416)
T 2pm9_A          208 -------------SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLD----W  270 (416)
T ss_dssp             -------------CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEE----E
T ss_pred             -------------ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEE----e
Confidence                         0001234567789999997 4678877666   777899887556788888 9998866665    6


Q ss_pred             cC-CCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCC-CeEEEecCCCcEEEEcCCCCCCcccc
Q 004745          605 GQ-RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFD-CVVATSGIDNTIKIWTPSASVPSIVS  676 (732)
Q Consensus       605 s~-dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~-~~l~S~s~D~~i~vW~~~~~~~~~~~  676 (732)
                      +| ++++|++|+.||+|++||+.+++++..+.+|...|++++|+|++ .+|++++.|++|+||++.+.......
T Consensus       271 s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~  344 (416)
T 2pm9_A          271 CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDE  344 (416)
T ss_dssp             CSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC
T ss_pred             CCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccc
Confidence            99 99999999999999999999999999999999999999999999 79999999999999999988765543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.4e-34  Score=294.71  Aligned_cols=206  Identities=16%  Similarity=0.147  Sum_probs=168.4

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---eEEEEccCCCcCeEEEEEecCCCCC-EEEEEECC
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDE-LVVSGAGD   85 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~---~~~~~~~~h~~~V~~~~~s~~~~g~-~l~s~~~d   85 (732)
                      +.+....+|.+.|++++|+|++++|++|+.|+.|+|||+.+++   ....+ .+|...|.+++|+|+  ++ +|++|+.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~~l~~~~~d   78 (342)
T 1yfq_A            2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDN--TDLQIYVGTVQ   78 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEES--SSEEEEEEETT
T ss_pred             cceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCC--CCcEEEEEcCC
Confidence            3445567899999999999999999999999999999998876   33444 489999999999999  58 99999999


Q ss_pred             CcEEEEEc-CCCCCCCCCCCCCCCceeecc--ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC---------CCCCC
Q 004745           86 AEVRLFNL-SRFSGRGLDDNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ---------GSSCP  153 (732)
Q Consensus        86 g~i~vwd~-~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~---------~~~~~  153 (732)
                      |.|++||+ ....           ...+.+  |...|.+++|+|  +++|++++.|+.|++||+++         .+.. 
T Consensus        79 g~i~~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-  144 (342)
T 1yfq_A           79 GEILKVDLIGSPS-----------FQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-  144 (342)
T ss_dssp             SCEEEECSSSSSS-----------EEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS-
T ss_pred             CeEEEEEeccCCc-----------eEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCee-
Confidence            99999999 7532           467778  999999999999  48999999999999999876         3311 


Q ss_pred             CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCc
Q 004745          154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPC  232 (732)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~  232 (732)
                                              .... +...+.+++|+|+ +  +++++.|+.|++||+++ .......         
T Consensus       145 ------------------------~~~~-~~~~v~~~~~~~~-~--l~~~~~d~~i~i~d~~~~~~~~~~~---------  187 (342)
T 1yfq_A          145 ------------------------NNTK-VKNKIFTMDTNSS-R--LIVGMNNSQVQWFRLPLCEDDNGTI---------  187 (342)
T ss_dssp             ------------------------SSSS-SCCCEEEEEECSS-E--EEEEESTTEEEEEESSCCTTCCCEE---------
T ss_pred             ------------------------eEEe-eCCceEEEEecCC-c--EEEEeCCCeEEEEECCcccccccee---------
Confidence                                    1111 5568999999987 3  99999999999999987 4321110         


Q ss_pred             cccccccccccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEECCC
Q 004745          233 VNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~  279 (732)
                         .      ...+.. .|.+++|+| ++++|++++.||.|++|++..
T Consensus       188 ---~------~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~  225 (342)
T 1yfq_A          188 ---E------ESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             ---E------ECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             ---e------ecCCCC-ceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence               0      022223 599999999 999999999999999999887

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.7e-35  Score=309.61  Aligned_cols=207  Identities=16%  Similarity=0.189  Sum_probs=149.0

Q ss_pred             cccEeeeccCCceeEEEEcCCCCE----EEEEeCCCcEEEEeCCCCee----EEEEccCCCcCeEEEEEecCCCCCEEEE
Q 004745           10 SQERELEGHQGCVNAISWNSKGSL----LISGSDDTHINVWSYSSRKL----LHSIETGHSANVFCTKFVPETSDELVVS   81 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~----lasg~~dg~i~vWd~~~~~~----~~~~~~~h~~~V~~~~~s~~~~g~~l~s   81 (732)
                      .+...+.+|..+|..+.+..+.+.    +.-.. +....+|+....+.    +... .+|...|.+++|+|+  |++|++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~fspd--g~~la~   81 (393)
T 1erj_A            6 VPYNQRANHSKPIPPFLLDLDSQSVPDALKKQT-NDYYILYNPALPREIDVELHKS-LDHTSVVCCVKFSND--GEYLAT   81 (393)
T ss_dssp             CCTTSSSCTTCCCCHHHHCCCSSSSCTTSEEEC-SSCEEEECTTSCCCEEEEEEEE-EECSSCCCEEEECTT--SSEEEE
T ss_pred             CCccccccccccCCCccccCChhHCcHhHhccC-CceEEEECCCCCcccCceeEEe-cCCCCEEEEEEECCC--CCEEEE
Confidence            344455667777765444333322    22233 33455787654432    1222 269999999999999  589998


Q ss_pred             EECCCcEEEEEcCCCCCCCCCCCCCCCceeecc------------------ccCceeEEEEecCCCcEEEEEeCCCcEEE
Q 004745           82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC------------------HTRRVKKLAVEVGNPHVVWSASEDGTLRQ  143 (732)
Q Consensus        82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~------------------h~~~v~~l~~~p~~~~~l~s~s~dg~i~v  143 (732)
                      |+ ++.+++|++.++..          +..+..                  +...|++++|+|++ ++|++|+.|+.|++
T Consensus        82 g~-~~~v~i~~~~~g~~----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~s~~~d~~i~i  149 (393)
T 1erj_A           82 GC-NKTTQVYRVSDGSL----------VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRI  149 (393)
T ss_dssp             EC-BSCEEEEETTTCCE----------EEEECC-----------------CCCCBEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred             Ec-CCcEEEEEecCCCE----------EEEecCccccccccccccccccCCCceeEEEEEECCCC-CEEEEEcCCCeEEE
Confidence            76 78999999986432          223322                  23359999999955 89999999999999


Q ss_pred             EECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccc
Q 004745          144 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  223 (732)
Q Consensus       144 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~  223 (732)
                      ||+.+++.                         +....+|...|.+++|+|+ +.+|++++.|++|++||+++++....+
T Consensus       150 wd~~~~~~-------------------------~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          150 WDIENRKI-------------------------VMILQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             EETTTTEE-------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EECCCCcE-------------------------EEEEccCCCCEEEEEEcCC-CCEEEEecCCCcEEEEECCCCeeEEEE
Confidence            99987651                         1223457778999999999 789999999999999999876533221


Q ss_pred             ccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEECCCC
Q 004745          224 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                                          . +.. .+.+++|+| ++++|++++.||.|++||+.++
T Consensus       204 --------------------~-~~~-~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~  239 (393)
T 1erj_A          204 --------------------S-IED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG  239 (393)
T ss_dssp             --------------------E-CSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTC
T ss_pred             --------------------E-cCC-CcEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence                                1 112 489999999 8999999999999999998873

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.7e-34  Score=295.60  Aligned_cols=152  Identities=13%  Similarity=0.162  Sum_probs=116.6

Q ss_pred             EeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004745           13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL   90 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v   90 (732)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++  .+..+ .+|...|.+++|+|...+++|++|+.|++|++
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            3567999999999999999999999999999999998875  45566 79999999999986322589999999999999


Q ss_pred             EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004745           91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  169 (732)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  169 (732)
                      ||++++..        .++..+.+|...|++++|+|++ +.+|++++.|+.|++||++.....                 
T Consensus        86 Wd~~~~~~--------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~-----------------  140 (316)
T 3bg1_A           86 WREENGTW--------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW-----------------  140 (316)
T ss_dssp             ECCSSSCC--------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-----------------
T ss_pred             EECCCCcc--------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-----------------
Confidence            99986422        2356778899999999999963 578999999999999998765310                 


Q ss_pred             cCCccccccCCCCCccceEEEEecCC
Q 004745          170 RCGAKRSLADPPKQTLSLKSCDISST  195 (732)
Q Consensus       170 ~~~~~~~~~~~~~~~~~v~~i~~~~~  195 (732)
                           ........|...|.+++|+|+
T Consensus       141 -----~~~~~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A          141 -----EVKKINNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             -----EECCBTTSSSSCBCCCEECCC
T ss_pred             -----ceeeeeccccCCcceEEEccc
Confidence                 011122345567788888886

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.2e-33  Score=284.65  Aligned_cols=169  Identities=12%  Similarity=0.121  Sum_probs=134.1

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC-CCcEEEEEeC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASE  137 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s~s~  137 (732)
                      .+|...|.+++|+|+  |++|++|+.|++|+|||+.....        .++..+.+|...|++++|+|+ .+++|++|+.
T Consensus         6 ~~h~~~V~~~~~s~~--g~~las~s~D~~v~iw~~~~~~~--------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~   75 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYY--GKRMATCSSDKTIKIFEVEGETH--------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   75 (297)
T ss_dssp             CSCSSCEEEEEECTT--SSEEEEEETTSCEEEEEBCSSCB--------CCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             cCCcCceEEEEECCC--CCEEEEEeCCCEEEEEecCCCCc--------EEEEEEccccCCeEEEEecCCCcCCEEEEEcC
Confidence            789999999999999  59999999999999999975322        336889999999999999863 3589999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCC
Q 004745          138 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRM  216 (732)
Q Consensus       138 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~  216 (732)
                      |++|++||+++++..                       .+.....|...|.+++|+|+. +.+|++++.|+.|++||+++
T Consensus        76 D~~v~iWd~~~~~~~-----------------------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           76 DGKVMIWKEENGRWS-----------------------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             TTEEEEEEBSSSCBC-----------------------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred             CCEEEEEEcCCCceE-----------------------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence            999999999876411                       111223466789999999973 67999999999999999986


Q ss_pred             CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC-------------CCEEEEEecCCeEEEEECCC
Q 004745          217 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-------------GEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~-------------g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ......           ..+       .+|.. .|++++|+|+             +++|++|+.|+.|++||+.+
T Consensus       133 ~~~~~~-----------~~~-------~~h~~-~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~  189 (297)
T 2pm7_B          133 NGTTSP-----------III-------DAHAI-GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS  189 (297)
T ss_dssp             SSCBCC-----------EEE-------ECCSS-CEEEEEECCCC------------CCEEEEEETTSCEEEEEEET
T ss_pred             CCceee-----------eee-------ecccC-ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC
Confidence            532110           000       34544 5999999997             56899999999999998766

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.1e-33  Score=301.51  Aligned_cols=197  Identities=14%  Similarity=0.295  Sum_probs=164.3

Q ss_pred             eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004745           15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS   94 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~   94 (732)
                      ..+|...|++++|  ++++|++|+.||+|++||+.+++.+..+ .+|...|.+++|  +  +++|++|+.||+|++||+.
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~--~--~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY--D--ERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC--C--SSEEEEEETTSCEEEEESS
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE--C--CCEEEEEcCCCeEEEEECC
Confidence            3456778998887  7899999999999999999999999988 799999999999  4  4799999999999999998


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                      ++          .++..+.+|...|.+++|++   .++++++.||.|++||+.++...                      
T Consensus       202 ~~----------~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~----------------------  246 (435)
T 1p22_A          202 TG----------EMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDI----------------------  246 (435)
T ss_dssp             SC----------CEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCC----------------------
T ss_pred             CC----------cEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCc----------------------
Confidence            64          33678889999999999964   58999999999999999876532                      


Q ss_pred             ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  254 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  254 (732)
                      .......+|...|.+++|+   +.+|++|+.||.|++||+++.+.+..+                    .+|.. .|.++
T Consensus       247 ~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~--------------------~~~~~-~v~~~  302 (435)
T 1p22_A          247 TLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTL--------------------NGHKR-GIACL  302 (435)
T ss_dssp             EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEE--------------------ECCSS-CEEEE
T ss_pred             eeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEE--------------------cCCCC-cEEEE
Confidence            0012233566789999993   679999999999999999987655443                    34544 59999


Q ss_pred             EEcCCCCEEEEEecCCeEEEEECCC
Q 004745          255 TFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       255 ~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .|  ++++|++|+.||.|++||+.+
T Consensus       303 ~~--~~~~l~~g~~dg~i~iwd~~~  325 (435)
T 1p22_A          303 QY--RDRLVVSGSSDNTIRLWDIEC  325 (435)
T ss_dssp             EE--ETTEEEEEETTSCEEEEETTT
T ss_pred             Ee--CCCEEEEEeCCCeEEEEECCC
Confidence            88  467999999999999999877

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-34  Score=296.29  Aligned_cols=180  Identities=14%  Similarity=0.158  Sum_probs=132.0

Q ss_pred             CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceee-cc-ccCceeEEEEecC
Q 004745           50 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-QC-HTRRVKKLAVEVG  127 (732)
Q Consensus        50 ~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~l~~~p~  127 (732)
                      ..+++..+ .+|...|.+++|+|+    +|++|+.|++|++||+.....        .....+ .+ |...|.+++|+|+
T Consensus         3 ~~~~~~~~-~~h~~~v~~~~~s~~----~las~~~D~~i~lw~~~~~~~--------~~~~~~~~~~h~~~v~~v~~sp~   69 (330)
T 2hes_X            3 SINLIKSL-KLYKEKIWSFDFSQG----ILATGSTDRKIKLVSVKYDDF--------TLIDVLDETAHKKAIRSVAWRPH   69 (330)
T ss_dssp             CCEEEEEE-ECCSSCEEEEEEETT----EEEEEESSSCEEEEECSSSCC--------EEEEEECTTCCCSCEEEEEECTT
T ss_pred             ccccceee-ccCCCceeeeccCCC----EEEEEcCCCEEEEEEecCCCe--------EEEEEEecCCccCCEEEEEECCC
Confidence            45667777 799999999999985    899999999999999986321        123444 34 9999999999995


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC
Q 004745          128 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  207 (732)
Q Consensus       128 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg  207 (732)
                      + ++|++++.|+.|++||+.......                  .....+....+|...|.+++|+|+ +++|++|+.|+
T Consensus        70 ~-~~las~s~D~~v~iw~~~~~~~~~------------------~~~~~~~~~~~h~~~V~~v~~sp~-g~~las~s~D~  129 (330)
T 2hes_X           70 T-SLLAAGSFDSTVSIWAKEESADRT------------------FEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDK  129 (330)
T ss_dssp             S-SEEEEEETTSCEEEEEC-------------------------CCCEEEEEEC----CEEEEEECTT-SCEEEEEETTS
T ss_pred             C-CEEEEEeCCCcEEEEEcccCcCcc------------------ccceeEEEEcCCCCcEEEEEECCC-CCEEEEEeCCC
Confidence            4 899999999999999986532100                  000112223467789999999999 78999999999


Q ss_pred             eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          208 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       208 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +|++||++......         .++..+       .+|.. .|++++|+|++++|++++.|++|++||+.+
T Consensus       130 ~v~iwd~~~~~~~~---------~~~~~~-------~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~  184 (330)
T 2hes_X          130 SVWIWETDESGEEY---------ECISVL-------QEHSQ-DVKHVIWHPSEALLASSSYDDTVRIWKDYD  184 (330)
T ss_dssp             CEEEEECCTTCCCC---------EEEEEE-------CCCSS-CEEEEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred             EEEEEeccCCCCCe---------EEEEEe-------ccCCC-ceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            99999995432110         111221       44555 599999999999999999999999998755

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=300.99  Aligned_cols=233  Identities=15%  Similarity=0.262  Sum_probs=166.4

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----------eEEEEccCCC------------cCeEEEEEecC
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----------LLHSIETGHS------------ANVFCTKFVPE   73 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~-----------~~~~~~~~h~------------~~V~~~~~s~~   73 (732)
                      .|.+.|++++|+|+|++||+|+.||.|+|||+.+++           ....+ .+|.            ..|++++|+|+
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcCC
Confidence            368999999999999999999999999999999876           46667 6898            88999999998


Q ss_pred             CCCCEEEEEECCCcEEEEEcCCCCCCCC-----------------CCCCC------------CCcee-eccccCceeEEE
Q 004745           74 TSDELVVSGAGDAEVRLFNLSRFSGRGL-----------------DDNAI------------TPSAL-YQCHTRRVKKLA  123 (732)
Q Consensus        74 ~~g~~l~s~~~dg~i~vwd~~~~~~~~~-----------------~~~~~------------~~~~~-~~~h~~~v~~l~  123 (732)
                      ++..+|++++.|++|++||+........                 .....            .+... ..+|...|++++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            4226999999999999999875221000                 00000            00112 367999999999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEE
Q 004745          124 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG  203 (732)
Q Consensus       124 ~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg  203 (732)
                      |+|+ +++|+++ .|+.|++||+++....           ..++....      .....|...|.+++|+|+++.+|++|
T Consensus       185 ~~~~-~~~l~s~-~d~~i~iwd~~~~~~~-----------~~~~~~~~------~~~~~~~~~v~~~~~~p~~~~~l~s~  245 (447)
T 3dw8_B          185 INSD-YETYLSA-DDLRINLWHLEITDRS-----------FNIVDIKP------ANMEELTEVITAAEFHPNSCNTFVYS  245 (447)
T ss_dssp             ECTT-SSEEEEE-CSSEEEEEETTEEEEE-----------EEEEECCC------SSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred             EcCC-CCEEEEe-CCCeEEEEECCCCCce-----------eeeeeccc------ccccccCcceEEEEECCCCCcEEEEE
Confidence            9995 5889898 7999999999843211           01111110      12335667899999999944899999


Q ss_pred             eCCCeEEEEECCCCCC----CcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          204 GSDAFARLYDRRMLPP----LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       204 ~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +.||.|++||+++.+.    +..+.....+ .....+       .+|. ..|++++|+|+|++|++++. +.|++||+.+
T Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~-~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          246 SSKGTIRLCDMRASALCDRHSKLFEEPEDP-SNRSFF-------SEII-SSISDVKFSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             ETTSCEEEEETTTCSSSCTTCEEECCC------CCHH-------HHHT-TCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred             eCCCeEEEEECcCCccccceeeEeccCCCc-cccccc-------cccC-ceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence            9999999999998764    2222110000 000000       0111 25999999999999999999 9999999986

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.5e-33  Score=292.55  Aligned_cols=210  Identities=16%  Similarity=0.189  Sum_probs=163.1

Q ss_pred             hhccccEeeeccCCceeEEEEcCC---CCEEEEEeCCCcEEEEeCCC-CeeE-EEEccCCCcCeEEEEEecCCCCCEEEE
Q 004745            7 RRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSS-RKLL-HSIETGHSANVFCTKFVPETSDELVVS   81 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~d---g~~lasg~~dg~i~vWd~~~-~~~~-~~~~~~h~~~V~~~~~s~~~~g~~l~s   81 (732)
                      ..++.++.+.+|.+.|++++|+|+   |++|++|+.||.|+|||+.+ +..+ ..+ .+|...|.+++|+|+  +++|++
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s  103 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-QMHTGPVLDVCWSDD--GSKVFT  103 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE-EECSSCEEEEEECTT--SSEEEE
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe-ccccCCEEEEEECcC--CCEEEE
Confidence            456778889999999999999999   69999999999999999997 5555 445 789999999999998  589999


Q ss_pred             EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEE--ecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004745           82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV--EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH  159 (732)
Q Consensus        82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  159 (732)
                      ++.||.|++||+.+..           ...+.+|...|++++|  +| ++++|++++.||.|++||+++++...      
T Consensus       104 ~~~dg~v~iwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~------  165 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQ-----------AIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMM------  165 (368)
T ss_dssp             EETTSEEEEEETTTTE-----------EEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSE------
T ss_pred             EcCCCcEEEEEcCCCC-----------ceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEE------
Confidence            9999999999998642           3446779999999999  77 44889999999999999998876320      


Q ss_pred             cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccc
Q 004745          160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  239 (732)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (732)
                            .+.              ....+.++.+.+   ..+++++.++.+++||++........            .   
T Consensus       166 ------~~~--------------~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~------------~---  207 (368)
T 3mmy_A          166 ------VLQ--------------LPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRR------------I---  207 (368)
T ss_dssp             ------EEE--------------CSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEE------------C---
T ss_pred             ------EEe--------------cCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhh------------c---
Confidence                  000              111566666664   37888999999999999865321111            0   


Q ss_pred             ccccCCCccccEEEEEEcCCCCE----EEEEecCCeEEEEECCC
Q 004745          240 HLSEHGRSSLHLTHVTFSPNGEE----VLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       240 ~~~~~~~~~~~i~~l~~sp~g~~----l~~~~~dg~v~iwd~~~  279 (732)
                          .......+..+.+.+++..    +++++.||.|++|++..
T Consensus       208 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  247 (368)
T 3mmy_A          208 ----ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP  247 (368)
T ss_dssp             ----CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred             ----cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence                0011113556666655544    99999999999999987

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.9e-33  Score=289.66  Aligned_cols=237  Identities=13%  Similarity=0.129  Sum_probs=181.1

Q ss_pred             ccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745           11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus        11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      ..+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.++    +.+..+ .+|...|++++|+|..++++|++++.||
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg   81 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDK   81 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence            34678899999999999999999999999999999999876    455666 6899999999999931148999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      .|++||+........ .....++..+.+|...|.+++|+|+. +++|++++.||.|++||+++++.......        
T Consensus        82 ~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--------  152 (351)
T 3f3f_A           82 TVKLWEEDPDQEECS-GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL--------  152 (351)
T ss_dssp             CEEEEEECTTSCTTS-SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE--------
T ss_pred             eEEEEecCCCccccc-ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc--------
Confidence            999999987532210 11123467788999999999999952 58999999999999999998774421110        


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCC--CCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISST--RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                          .............+...+.++.|+|+  ++.+|++++.|+.+.+|+....+...           +..+       
T Consensus       153 ----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~-------  210 (351)
T 3f3f_A          153 ----TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV-----------AAKL-------  210 (351)
T ss_dssp             ----EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE-----------EEEC-------
T ss_pred             ----cccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee-----------eeec-------
Confidence                00000011122356678999999996  46799999999999888876654210           1111       


Q ss_pred             CCCccccEEEEEEcCCC----CEEEEEecCCeEEEEECCCC
Q 004745          244 HGRSSLHLTHVTFSPNG----EEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g----~~l~~~~~dg~v~iwd~~~~  280 (732)
                      .+|.. .|++++|+|++    ++|++++.||.|++||+.++
T Consensus       211 ~~h~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          211 PGHKS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             CCCCS-CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             CCCCc-ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence            34554 69999999998    89999999999999999873

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-35  Score=312.18  Aligned_cols=324  Identities=11%  Similarity=0.070  Sum_probs=231.7

Q ss_pred             CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCC-EEEEEECCCcEEEEEc----CCCCCCCCCCCCCCCceee---
Q 004745           41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNL----SRFSGRGLDDNAITPSALY---  112 (732)
Q Consensus        41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~-~l~s~~~dg~i~vwd~----~~~~~~~~~~~~~~~~~~~---  112 (732)
                      ..+.+|++......... ..|...|++++|+|+  +. +|++|+.|+.|++|++    .++.....    ......+   
T Consensus        25 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~   97 (425)
T 1r5m_A           25 SIDSSDDLDGFVKILKE-IVKLDNIVSSTWNPL--DESILAYGEKNSVARLARIVETDQEGKKYWK----LTIIAELRHP   97 (425)
T ss_dssp             ---------CCCEECEE-EEECSCCSEEEECSS--CTTEEEEEETBTEEEEEEEEEC------CEE----EEEEEEEECC
T ss_pred             cccccccchhhhhheee-eeccCceEEEEECCC--CCcEEEEecCCceEEEEEEecccCCcccccc----cccccccccc
Confidence            44678888766555444 467799999999999  47 9999999999999999    65431000    0001222   


Q ss_pred             -------ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCcc
Q 004745          113 -------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  185 (732)
Q Consensus       113 -------~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (732)
                             .+|...|++++|+|+ +++|++++.||.|++||. +++                         .+.....|..
T Consensus        98 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~~~-~~~-------------------------~~~~~~~~~~  150 (425)
T 1r5m_A           98 FALSASSGKTTNQVTCLAWSHD-GNSIVTGVENGELRLWNK-TGA-------------------------LLNVLNFHRA  150 (425)
T ss_dssp             CCCC------CBCEEEEEECTT-SSEEEEEETTSCEEEEET-TSC-------------------------EEEEECCCCS
T ss_pred             ccccccccCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEeC-CCC-------------------------eeeeccCCCc
Confidence                   226889999999995 589999999999999993 332                         1112234667


Q ss_pred             ceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEE
Q 004745          186 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  265 (732)
Q Consensus       186 ~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~  265 (732)
                      .|.+++|+|+ +.+|++++.|+.|++||+.+.+.+..+.........+...   .   .......+.+++|+|++ .+++
T Consensus       151 ~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~-~~~~  222 (425)
T 1r5m_A          151 PIVSVKWNKD-GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE---N---HSGDGSLGVDVEWVDDD-KFVI  222 (425)
T ss_dssp             CEEEEEECTT-SSEEEEEETTCCEEEEETTTTEEEEEECCC---------------------CCCBSCCEEEETT-EEEE
T ss_pred             cEEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec---c---ccCCcceeeEEEEcCCC-EEEE
Confidence            8999999998 7899999999999999999876655443221110000000   0   00111127889999986 5889


Q ss_pred             EecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhc
Q 004745          266 SYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEE  345 (732)
Q Consensus       266 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~  345 (732)
                      ++.+|.|++||+.+++...                                                             
T Consensus       223 ~~~~g~i~~~d~~~~~~~~-------------------------------------------------------------  241 (425)
T 1r5m_A          223 PGPKGAIFVYQITEKTPTG-------------------------------------------------------------  241 (425)
T ss_dssp             ECGGGCEEEEETTCSSCSE-------------------------------------------------------------
T ss_pred             EcCCCeEEEEEcCCCceee-------------------------------------------------------------
Confidence            9999999999988732110                                                             


Q ss_pred             CCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCC
Q 004745          346 GKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCK  425 (732)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (732)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (425)
T 1r5m_A          242 --------------------------------------------------------------------------------  241 (425)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCC
Q 004745          426 YKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRS  505 (732)
Q Consensus       426 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~  505 (732)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (425)
T 1r5m_A          242 --------------------------------------------------------------------------------  241 (425)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccc
Q 004745          506 EREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMK  585 (732)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~  585 (732)
                                                            .+..|...|.+++|+|++++|++++.++...+|+... .+.+
T Consensus       242 --------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~  282 (425)
T 1r5m_A          242 --------------------------------------KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQ  282 (425)
T ss_dssp             --------------------------------------EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCS
T ss_pred             --------------------------------------eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-Cccc
Confidence                                                  1112334456777888888888887666667788776 6788


Q ss_pred             eeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEE
Q 004745          586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW  665 (732)
Q Consensus       586 ~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW  665 (732)
                      ..+.+|...+.++.    |+|++ +|++++.|+.|++||+.+++++..+.+|...|++++|+|++.+|++++.|+.|+||
T Consensus       283 ~~~~~~~~~i~~~~----~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~  357 (425)
T 1r5m_A          283 NCFYGHSQSIVSAS----WVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVY  357 (425)
T ss_dssp             EEECCCSSCEEEEE----EETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eEecCCCccEEEEE----ECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEE
Confidence            89999998866555    69999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCC
Q 004745          666 TPSASV  671 (732)
Q Consensus       666 ~~~~~~  671 (732)
                      ++.+++
T Consensus       358 ~~~~~~  363 (425)
T 1r5m_A          358 DLKKLN  363 (425)
T ss_dssp             ECHHHH
T ss_pred             ECCCCc
Confidence            999887

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.7e-32  Score=280.48  Aligned_cols=167  Identities=20%  Similarity=0.290  Sum_probs=140.7

Q ss_pred             eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcE
Q 004745           52 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  131 (732)
Q Consensus        52 ~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  131 (732)
                      .....+ .+|...|++++|+|+  +++|++++.||.|++|++.++          .....+.+|...|.+++|+|++ ++
T Consensus        14 ~~~~~~-~gh~~~v~~~~~s~~--~~~l~s~~~dg~i~iw~~~~~----------~~~~~~~~h~~~v~~~~~~~~~-~~   79 (312)
T 4ery_A           14 ALKFTL-AGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDG----------KFEKTISGHKLGISDVAWSSDS-NL   79 (312)
T ss_dssp             EEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTC----------CEEEEECCCSSCEEEEEECTTS-SE
T ss_pred             eeEEEE-cccCCcEEEEEECCC--CCEEEEeeCCCeEEEEeCCCc----------ccchhhccCCCceEEEEEcCCC-CE
Confidence            445555 799999999999999  589999999999999999763          2367788999999999999954 89


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEE
Q 004745          132 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  211 (732)
Q Consensus       132 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~i  211 (732)
                      |++++.|+.|++||+++++..                         .....|...|.++.|+|+ +.+|++|+.|+.|++
T Consensus        80 l~s~~~d~~i~vwd~~~~~~~-------------------------~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~i  133 (312)
T 4ery_A           80 LVSASDDKTLKIWDVSSGKCL-------------------------KTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI  133 (312)
T ss_dssp             EEEEETTSEEEEEETTTCCEE-------------------------EEEECCSSCEEEEEECSS-SSEEEEEETTSCEEE
T ss_pred             EEEECCCCEEEEEECCCCcEE-------------------------EEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEE
Confidence            999999999999999876521                         112346668999999998 789999999999999


Q ss_pred             EECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          212 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       212 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ||+++.+.+..+                    ..|.. +|.+++|+|++++|++++.||.|++||+.+
T Consensus       134 wd~~~~~~~~~~--------------------~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~  180 (312)
T 4ery_A          134 WDVKTGKCLKTL--------------------PAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  180 (312)
T ss_dssp             EETTTCCEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EECCCCEEEEEe--------------------cCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            999987644333                    33444 599999999999999999999999999887

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.7e-33  Score=282.94  Aligned_cols=265  Identities=13%  Similarity=0.163  Sum_probs=207.1

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~--~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      +..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+  .+.+..+ .+|.+.|.+++|+|+..+++|++|+.|++|+
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            456889999999999999999999999999999999974  4667777 7999999999998642258999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      +||++++..        ..+..+.+|...|.+++|+|+. +.+|++++.|+.|++||+++.....               
T Consensus        81 iWd~~~~~~--------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~---------------  137 (297)
T 2pm7_B           81 IWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---------------  137 (297)
T ss_dssp             EEEBSSSCB--------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---------------
T ss_pred             EEEcCCCce--------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee---------------
Confidence            999986432        2356778899999999999962 5899999999999999998753110               


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCC------------CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTR------------PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  236 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~------------~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  236 (732)
                              ......|...|.+++|+|+.            +.+|++|+.|++|++||+++.+....         +...+
T Consensus       138 --------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~---------~~~~l  200 (297)
T 2pm7_B          138 --------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV---------LESTL  200 (297)
T ss_dssp             --------CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE---------EEEEE
T ss_pred             --------eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE---------EEEEe
Confidence                    01112466689999999962            46999999999999999986542110         01111


Q ss_pred             cccccccCCCccccEEEEEEcCCC---CEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCc
Q 004745          237 CPMHLSEHGRSSLHLTHVTFSPNG---EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHD  313 (732)
Q Consensus       237 ~~~~~~~~~~~~~~i~~l~~sp~g---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (732)
                             .+|.. .|++++|+|++   ++|++++.|++|+|||+.+........       .  +  ...++...+.+++
T Consensus       201 -------~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~-------~--~--~~~~~~~~v~~~~  261 (297)
T 2pm7_B          201 -------EGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKT-------L--L--KEEKFPDVLWRAS  261 (297)
T ss_dssp             -------CCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE-------E--S--SSSCCSSCEEEEE
T ss_pred             -------cCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcccee-------e--e--ecccCCCcEEEEE
Confidence                   45665 69999999985   899999999999999998743211100       0  0  1234556788899


Q ss_pred             cCCCccccccccccCcchhhHHHHHHHhhhh
Q 004745          314 FLQTNIRVRGEVATGLGKCRMLVEIARNSLE  344 (732)
Q Consensus       314 ~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~  344 (732)
                      |+|+|+.++   +++.|+.+++     |+..
T Consensus       262 ~s~~g~~la---s~~~D~~v~l-----w~~~  284 (297)
T 2pm7_B          262 WSLSGNVLA---LSGGDNKVTL-----WKEN  284 (297)
T ss_dssp             ECSSSCCEE---EEETTSCEEE-----EEEC
T ss_pred             ECCCCCEEE---EEcCCCcEEE-----EEEC
Confidence            999999999   9999999999     8765

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7.6e-33  Score=287.02  Aligned_cols=173  Identities=20%  Similarity=0.173  Sum_probs=133.6

Q ss_pred             eeEEEEccCCCcCeEEEEE-----ec-CCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe
Q 004745           52 KLLHSIETGHSANVFCTKF-----VP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE  125 (732)
Q Consensus        52 ~~~~~~~~~h~~~V~~~~~-----s~-~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  125 (732)
                      ++...+ .+|...|++++|     ++ +  +++|++|+.|++|++||+.......   ....+...+.+|...|.+++|+
T Consensus        12 ~~~~~l-~gH~~~V~~~~~~~s~~~~~d--~~~l~sgs~D~~v~iWd~~~~~~~~---~~~~~~~~l~~h~~~V~~~~~~   85 (343)
T 2xzm_R           12 VKRGIL-EGHSDWVTSIVAGFSQKENED--SPVLISGSRDKTVMIWKLYEEEQNG---YFGIPHKALTGHNHFVSDLALS   85 (343)
T ss_dssp             EEEEEE-ECCSSCEEEEEECCCSSTTCC--CCEEEEEETTSCEEEEEECSSCCSS---BSEEEEEEECCCSSCEEEEEEC
T ss_pred             eeeeee-ccchhhhhheeeEEEeecCCC--CCEEEEEcCCCEEEEEECCcCCccc---ccccccchhccCCCceEEEEEC
Confidence            344556 799999999999     66 5  5899999999999999997532110   0012356788999999999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC
Q 004745          126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS  205 (732)
Q Consensus       126 p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~  205 (732)
                      |+ +.++++++.|++|++||+++++.                         +....+|...|.+++|+|+ +.+|++++.
T Consensus        86 ~~-~~~l~s~s~D~~v~lwd~~~~~~-------------------------~~~~~~h~~~v~~v~~sp~-~~~l~s~~~  138 (343)
T 2xzm_R           86 QE-NCFAISSSWDKTLRLWDLRTGTT-------------------------YKRFVGHQSEVYSVAFSPD-NRQILSAGA  138 (343)
T ss_dssp             SS-TTEEEEEETTSEEEEEETTSSCE-------------------------EEEEECCCSCEEEEEECSS-TTEEEEEET
T ss_pred             CC-CCEEEEEcCCCcEEEEECCCCcE-------------------------EEEEcCCCCcEEEEEECCC-CCEEEEEcC
Confidence            95 48999999999999999988752                         1122356779999999999 789999999


Q ss_pred             CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC----------CEEEEEecCCeEEEE
Q 004745          206 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG----------EEVLLSYSGEHVYLM  275 (732)
Q Consensus       206 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g----------~~l~~~~~dg~v~iw  275 (732)
                      |+.|++||+...... ..                 ....+|.. .|.+++|+|++          .+|++++.||.|++|
T Consensus       139 d~~i~~wd~~~~~~~-~~-----------------~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  199 (343)
T 2xzm_R          139 EREIKLWNILGECKF-SS-----------------AEKENHSD-WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW  199 (343)
T ss_dssp             TSCEEEEESSSCEEE-EC-----------------CTTTSCSS-CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEE
T ss_pred             CCEEEEEeccCCcee-ee-----------------ecccCCCc-eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEE
Confidence            999999999732111 00                 00023444 59999999987          789999999999999


Q ss_pred             E
Q 004745          276 D  276 (732)
Q Consensus       276 d  276 (732)
                      |
T Consensus       200 d  200 (343)
T 2xzm_R          200 N  200 (343)
T ss_dssp             E
T ss_pred             c
Confidence            8

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3e-33  Score=299.08  Aligned_cols=307  Identities=11%  Similarity=0.031  Sum_probs=224.0

Q ss_pred             cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEE
Q 004745           63 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR  142 (732)
Q Consensus        63 ~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  142 (732)
                      ..+++++|+|+  +++|++++.|+.|++||+.+...          ...+..| ..+....|+| ++++|++++.||.|+
T Consensus        57 ~~~~~~~~s~~--g~~l~~~~~d~~v~i~d~~~~~~----------~~~~~~~-~~~~~~~~~~-~~~~l~~~~~dg~i~  122 (420)
T 3vl1_A           57 DAGKGNTFEKV--GSHLYKARLDGHDFLFNTIIRDG----------SKMLKRA-DYTAVDTAKL-QMRRFILGTTEGDIK  122 (420)
T ss_dssp             BCCTTCEEEEE--ETTEEEEEETTEEEEEECCSEET----------TTTSCSC-CEEEEEEECS-SSCEEEEEETTSCEE
T ss_pred             ccccceeeeec--CCeEEEEEcCCcEEEEEecccce----------eeEEecC-CceEEEEEec-CCCEEEEEECCCCEE
Confidence            33558999999  58999999999999999986432          3334444 3444456777 558999999999999


Q ss_pred             EEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Q 004745          143 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  222 (732)
Q Consensus       143 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~  222 (732)
                      +||+.+++.                         ......|...|.+++|+|+ +.+|++|+.|+.|++||+++.+.+..
T Consensus       123 iwd~~~~~~-------------------------~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~  176 (420)
T 3vl1_A          123 VLDSNFNLQ-------------------------REIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGSNPRT  176 (420)
T ss_dssp             EECTTSCEE-------------------------EEETTSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCCCEE
T ss_pred             EEeCCCcce-------------------------eeecccccCccEEEEECCC-CCEEEEEeCCCeEEEEeCCCCcCceE
Confidence            999886541                         1223457779999999998 78999999999999999998765544


Q ss_pred             cccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCC
Q 004745          223 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  302 (732)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (732)
                      +                    .+|.. .|++++|+|++++|++++.||.|++||+.+++....+..+.            
T Consensus       177 ~--------------------~~h~~-~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~------------  223 (420)
T 3vl1_A          177 L--------------------IGHRA-TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE------------  223 (420)
T ss_dssp             E--------------------ECCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT------------
T ss_pred             E--------------------cCCCC-cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC------------
Confidence            3                    44555 59999999999999999999999999999854322111100            


Q ss_pred             CCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHH
Q 004745          303 NGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAAL  382 (732)
Q Consensus       303 ~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  382 (732)
                       .+...+..+++.+++...                                                             
T Consensus       224 -~~~~~v~~~~~~~~~~~~-------------------------------------------------------------  241 (420)
T 3vl1_A          224 -NPHDGVNSIALFVGTDRQ-------------------------------------------------------------  241 (420)
T ss_dssp             -BTTCCEEEEEEEECCCSS-------------------------------------------------------------
T ss_pred             -CCCCCccEEEEecCCcce-------------------------------------------------------------
Confidence             000011111111100000                                                             


Q ss_pred             hhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHh
Q 004745          383 LLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAET  462 (732)
Q Consensus       383 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~  462 (732)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (420)
T 3vl1_A          242 --------------------------------------------------------------------------------  241 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcc
Q 004745          463 EKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLN  542 (732)
Q Consensus       463 d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~  542 (732)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (420)
T 3vl1_A          242 --------------------------------------------------------------------------------  241 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCC-EEEEecCCCcEE
Q 004745          543 VRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGD-YIASGSDDGRWF  621 (732)
Q Consensus       543 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~-~lasgs~Dg~i~  621 (732)
                       ....+...+.+++|+|++++|++++.++...+|+............+|...++++.    |+|+++ +|++|+.||.|+
T Consensus       242 -~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~l~~g~~dg~i~  316 (420)
T 3vl1_A          242 -LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLT----VDGNNANYIYAGYENGMLA  316 (420)
T ss_dssp             -CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEE----ECSSCTTEEEEEETTSEEE
T ss_pred             -eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEE----EeCCCCCEEEEEeCCCeEE
Confidence             01123445678888888888888877777777887763333334456777766555    699999 999999999999


Q ss_pred             EEEcCcccE-EEEEec-CcccEEEEeecCCCCeEEEecCCCcEEEEcCCCC
Q 004745          622 IWEKQTGRL-IKMLLG-DEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS  670 (732)
Q Consensus       622 iWd~~tg~~-~~~l~g-H~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~  670 (732)
                      +||+.+++. +..+.+ |...|+++.| |++.+|+|++.|++|++|++...
T Consensus       317 vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          317 QWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             EEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred             EEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence            999999854 888888 6778888855 57889999999999999999874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2e-32  Score=283.03  Aligned_cols=205  Identities=19%  Similarity=0.264  Sum_probs=169.5

Q ss_pred             eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE---EEE-ccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004745           15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL---HSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRL   90 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~---~~~-~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v   90 (732)
                      ..+|..+|++++|+|++++|++++ ||.|++||+.+++..   ..+ ..+|...|.+++|+|+  +++|++++.|+.|++
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIVGGEASTLSI  123 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEEEESSSEEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC--CCEEEEEcCCCcEEE
Confidence            347999999999999999999998 999999999876533   222 1278999999999998  589999999999999


Q ss_pred             EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004745           91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  170 (732)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  170 (732)
                      ||+.....        .....+..|...|.+++|+|+ +++|++++.||.|++||+++++.                   
T Consensus       124 ~d~~~~~~--------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~-------------------  175 (337)
T 1gxr_A          124 WDLAAPTP--------RIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTL-------------------  175 (337)
T ss_dssp             EECCCC----------EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEE-------------------
T ss_pred             EECCCCCc--------ceeeecccCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCce-------------------
Confidence            99986432        235677889999999999995 58999999999999999987652                   


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  250 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (732)
                            +.....|...+.+++|+|+ +.+|++++.|+.|++||+++.+.+..+                     .+.. .
T Consensus       176 ------~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~---------------------~~~~-~  226 (337)
T 1gxr_A          176 ------VRQFQGHTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQLQQH---------------------DFTS-Q  226 (337)
T ss_dssp             ------EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE---------------------ECSS-C
T ss_pred             ------eeeeecccCceEEEEECCC-CCEEEEEecCCcEEEEECCCCceEeee---------------------cCCC-c
Confidence                  1112345668999999998 789999999999999999987543322                     1222 5


Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          251 LTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       251 i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +.+++|+|++++|++++.++.|++||+.+
T Consensus       227 v~~~~~s~~~~~l~~~~~~~~i~~~~~~~  255 (337)
T 1gxr_A          227 IFSLGYCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            99999999999999999999999999987

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-33  Score=300.20  Aligned_cols=209  Identities=15%  Similarity=0.105  Sum_probs=167.3

Q ss_pred             EeeeccCCceeEEEEcCC------CCEEEEEeCCCcEEEEeCCCCee-----------EEEEccCCCcCeEEEEEecCCC
Q 004745           13 RELEGHQGCVNAISWNSK------GSLLISGSDDTHINVWSYSSRKL-----------LHSIETGHSANVFCTKFVPETS   75 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~d------g~~lasg~~dg~i~vWd~~~~~~-----------~~~~~~~h~~~V~~~~~s~~~~   75 (732)
                      .++.+|.+.|++++|+|+      +.+||+|+.||+|+|||+.+++.           ...+ .+|...|++++|+|+  
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~~--  277 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL-SLADSLITTFDFLSP--  277 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESSS--
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEE-EcCCCCEEEEEecCC--
Confidence            456788999999999997      57999999999999999987642           1345 689999999999986  


Q ss_pred             CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEE--EEecCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004745           76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL--AVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  153 (732)
Q Consensus        76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~  153 (732)
                       ..|++|+.||+|++||++++.         .+...+.+|...|+++  +|+|++.++|+|++.|++|++||+++++.. 
T Consensus       278 -~~lasgs~DgtV~lWD~~~~~---------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~-  346 (524)
T 2j04_B          278 -TTVVCGFKNGFVAEFDLTDPE---------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT-  346 (524)
T ss_dssp             -SEEEEEETTSEEEEEETTBCS---------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH-
T ss_pred             -CeEEEEeCCCEEEEEECCCCC---------CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc-
Confidence             589999999999999998642         2356688999999999  466643389999999999999999876421 


Q ss_pred             CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcc
Q 004745          154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  233 (732)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  233 (732)
                                ..+..           . .....|.+++|+|+ +..|++++.|++|++||+++...+..+          
T Consensus       347 ----------~~~~~-----------~-~~~~~v~~v~fsp~-~~~l~s~~~d~tv~lwd~~~~~~~~~l----------  393 (524)
T 2j04_B          347 ----------KTTVS-----------R-FRGSNLVPVVYCPQ-IYSYIYSDGASSLRAVPSRAAFAVHPL----------  393 (524)
T ss_dssp             ----------CEEEE-----------E-CSCCSCCCEEEETT-TTEEEEECSSSEEEEEETTCTTCCEEE----------
T ss_pred             ----------ccccc-----------c-cccCcccceEeCCC-cCeEEEeCCCCcEEEEECcccccceee----------
Confidence                      01100           0 00124778999998 778999999999999999986543332          


Q ss_pred             ccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          234 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       234 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                                .+|.. .|++|+|+|+|++|++|+.||+|++||+..
T Consensus       394 ----------~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          394 ----------VSRET-TITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             ----------EECSS-CEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             ----------ecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence                      45655 699999999999999999999999999754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.8e-32  Score=280.90  Aligned_cols=258  Identities=14%  Similarity=0.181  Sum_probs=209.7

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      .+++.+++|...|++++|+|++++|++|+.|++|+|||+.+++.+..+ .+|...|.+++|+|+  +.+|++|+.|++|+
T Consensus        56 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~s~D~~i~  132 (319)
T 3frx_A           56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKK--ASMIISGSRDKTIK  132 (319)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTT--SCEEEEEETTSCEE
T ss_pred             ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCC--CCEEEEEeCCCeEE
Confidence            356789999999999999999999999999999999999999999998 799999999999998  58999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-----CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-----PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      +||++.           .++..+.+|...|.++.|.|..     +.+|++++.|+.|++||+++.+.             
T Consensus       133 vwd~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------  188 (319)
T 3frx_A          133 VWTIKG-----------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI-------------  188 (319)
T ss_dssp             EEETTS-----------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE-------------
T ss_pred             EEECCC-----------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh-------------
Confidence            999973           3367888999999999999843     34899999999999999987541             


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                                  .....+|...|.+++|+|+ +.+|++|+.|+.|++||+++.+.+..+                    .
T Consensus       189 ------------~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~i~iwd~~~~~~~~~~--------------------~  235 (319)
T 3frx_A          189 ------------EADFIGHNSNINTLTASPD-GTLIASAGKDGEIMLWNLAAKKAMYTL--------------------S  235 (319)
T ss_dssp             ------------EEEECCCCSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEEEEE--------------------E
T ss_pred             ------------heeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEe--------------------c
Confidence                        1122357779999999999 889999999999999999987544333                    1


Q ss_pred             CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccc
Q 004745          245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE  324 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  324 (732)
                      .+ . .|.+++|+|++.+|++++.+ .+++|++...........        .+......+...+.+++|+|||+.++  
T Consensus       236 ~~-~-~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~spdg~~l~--  302 (319)
T 3frx_A          236 AQ-D-EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRP--------EFAGYSKAAEPHAVSLAWSADGQTLF--  302 (319)
T ss_dssp             CC-S-CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECC--------CCTTCCGGGCCCEEEEEECTTSSEEE--
T ss_pred             CC-C-cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCc--------cccccccCcCcceeEEEECCCCCEEE--
Confidence            12 2 59999999999988887754 699999987332111110        01112233455677899999999999  


Q ss_pred             cccCcchhhHHHHHHHhhhhcC
Q 004745          325 VATGLGKCRMLVEIARNSLEEG  346 (732)
Q Consensus       325 ~~~~~d~~~~l~~~~~~~~~~~  346 (732)
                       +++.|+.+++     |++.++
T Consensus       303 -sg~~Dg~i~v-----Wd~~t~  318 (319)
T 3frx_A          303 -AGYTDNVIRV-----WQVMTA  318 (319)
T ss_dssp             -EEETTSCEEE-----EEEEEC
T ss_pred             -EeecCceEEE-----EEEeec
Confidence             9999999999     887654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.1e-32  Score=281.27  Aligned_cols=176  Identities=20%  Similarity=0.266  Sum_probs=136.0

Q ss_pred             CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC
Q 004745           50 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP  129 (732)
Q Consensus        50 ~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  129 (732)
                      +.+...++ ++|.+.|++++|+|+. +++|+||+.|++|+|||+.......     ..+...+.+|...|.+++|+|++ 
T Consensus        27 ~~~l~~tL-~GH~~~V~~v~~sp~~-~~~l~S~s~D~~i~vWd~~~~~~~~-----~~~~~~l~~h~~~V~~~~~s~dg-   98 (340)
T 4aow_A           27 QMTLRGTL-KGHNGWVTQIATTPQF-PDMILSASRDKTIIMWKLTRDETNY-----GIPQRALRGHSHFVSDVVISSDG-   98 (340)
T ss_dssp             EEEEEEEE-CCCSSCEEEEEECTTC-TTEEEEEETTSCEEEEEECCSSSCS-----EEEEEEECCCSSCEEEEEECTTS-
T ss_pred             ceEEEEEE-CCccCCEEEEEEeCCC-CCEEEEEcCCCeEEEEECCCCCccc-----ceeeEEEeCCCCCEEEEEECCCC-
Confidence            34455567 8999999999999985 5899999999999999998643221     13467788999999999999954 


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeE
Q 004745          130 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  209 (732)
Q Consensus       130 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v  209 (732)
                      ++|++++.|+.|++|+.......                         .....+...+..+.++++ +.+|++++.|+.+
T Consensus        99 ~~l~s~~~d~~i~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~~  152 (340)
T 4aow_A           99 QFALSGSWDGTLRLWDLTTGTTT-------------------------RRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTI  152 (340)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEE-------------------------EEEECCSSCEEEEEECTT-SSCEEEEETTSCE
T ss_pred             CEEEEEcccccceEEeeccccee-------------------------eeecCCCCceeEEEEeec-CccceeecCCCeE
Confidence            89999999999999998776421                         111123346778888988 7899999999999


Q ss_pred             EEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC--CEEEEEecCCeEEEEECCC
Q 004745          210 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       210 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g--~~l~~~~~dg~v~iwd~~~  279 (732)
                      ++||+.........                   ..+|.. .+..++|++++  .++++++.|+.|++||+.+
T Consensus       153 ~~~d~~~~~~~~~~-------------------~~~~~~-~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~  204 (340)
T 4aow_A          153 KLWNTLGVCKYTVQ-------------------DESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN  204 (340)
T ss_dssp             EEECTTSCEEEEEC-------------------SSSCSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred             EEEEeCCCceEEEE-------------------eccccC-cccceEEccCCCCcEEEEEcCCCEEEEEECCC
Confidence            99998754321110                   033444 59999999865  5788999999999999876

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-34  Score=298.50  Aligned_cols=200  Identities=16%  Similarity=0.182  Sum_probs=144.6

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      .-...|.+++|+|||+++||++.|++|+  |...++.   + .+|...|.+++|+|+  |       .++++.+|+.+  
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l-~gh~~~v~~V~FsPd--g-------~~~~~~~~~~~--   75 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---I-NCNSKNLFHVKEFPL--E-------FENKLDFELAQ--   75 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---C-SSBGGGTEEEEEECC--C-------CCCTTTTSCCC--
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccce---e-cCCCccEEEEEECCC--C-------CcceEEEEeCC--
Confidence            4468999999999999999999999999  7555544   3 699999999999999  4       46665555543  


Q ss_pred             CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004745           97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  176 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (732)
                       +..        +..+ .|...|.+++|+|++ .+||+++.||.|++||... .               +..+.      
T Consensus        76 -~~~--------~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~-~---------------l~~l~------  122 (588)
T 2j04_A           76 -QNG--------LLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK-M---------------LTNLD------  122 (588)
T ss_dssp             -SSC--------SSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE-E---------------EEECC------
T ss_pred             -Cce--------Eeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc-e---------------eeecc------
Confidence             211        2222 457899999999955 8999999999999999432 0               00000      


Q ss_pred             ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc-cccCCCCCCccccccccccccCCCccccEEEEE
Q 004745          177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS-CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  255 (732)
Q Consensus       177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  255 (732)
                       .........+.+++|+|+ |++|++|+.||+|+|||+.++..... +       ..+..+   .....+|.. +|.+++
T Consensus       123 -~~~~~~~~sv~svafSPD-G~~LAsgs~DGtVkIWd~~~~~l~~~~~-------i~l~ti---~~~~~gh~~-~V~sVa  189 (588)
T 2j04_A          123 -SKGNLSSRTYHCFEWNPI-ESSIVVGNEDGELQFFSIRKNSENTPEF-------YFESSI---RLSDAGSKD-WVTHIV  189 (588)
T ss_dssp             -CSSCSTTTCEEEEEECSS-SSCEEEEETTSEEEEEECCCCTTTCCCC-------EEEEEE---ECSCTTCCC-CEEEEE
T ss_pred             -CCCccccccEEEEEEcCC-CCEEEEEcCCCEEEEEECCCCccccccc-------eeeeee---ecccccccc-cEEEEE
Confidence             000001236899999999 89999999999999999987642100 0       000010   001134554 799999


Q ss_pred             EcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          256 FSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       256 ~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      |+|+|  |++++.|+.|++||+.+..
T Consensus       190 wSPdg--Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          190 WYEDV--LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             EETTE--EEEEETTCCEEEECCCSSS
T ss_pred             EcCCc--EEEEeCCCeEEEEECCCCc
Confidence            99999  8899999999999998844

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-32  Score=292.94  Aligned_cols=203  Identities=14%  Similarity=0.190  Sum_probs=149.0

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEec-CCCCCEEEEEECCCcEEEEEcCCCCCCCCCCC
Q 004745           26 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  104 (732)
Q Consensus        26 ~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~-~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~  104 (732)
                      .|+|+++.+++++      .|+ .+++.+..+..+|.+.|++++|+| +  +++|++|+.||+|+|||+.+.....    
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~--~~~l~s~s~dg~v~vwd~~~~~~~~----  100 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGE--TPYLITGSDQGVIKIWNLKEIIVGE----  100 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSS--SCEEEEEETTSEEEEEEHHHHHTTC----
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCC--CCEEEEecCCceEEEeECcccccCc----
Confidence            3678888887765      488 557788888678999999999999 7  5899999999999999997511110    


Q ss_pred             CCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC---CCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004745          105 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR---QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  181 (732)
Q Consensus       105 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (732)
                      ...+...+ +|...|++++|+| ++++|++++.||.|++||+.   +++..            ......  ....+...+
T Consensus       101 ~~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~------------~~~~~~--~i~~~~~~~  164 (437)
T 3gre_A          101 VYSSSLTY-DCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEV------------KFLNCE--CIRKINLKN  164 (437)
T ss_dssp             CCSCSEEE-ECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEE------------EEEEEE--EEEEEEGGG
T ss_pred             ccceeeec-cCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCcee------------eccccc--eeEEEEccC
Confidence            01122333 5899999999999 45899999999999999995   33211            000000  011111111


Q ss_pred             -CCccceEEEE--ecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC--CccccEEEEEE
Q 004745          182 -KQTLSLKSCD--ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG--RSSLHLTHVTF  256 (732)
Q Consensus       182 -~~~~~v~~i~--~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~  256 (732)
                       .+...+.++.  ++++ +.+|++|+.|+.|++||+++.+.+..+                    .+  |.. .|++++|
T Consensus       165 ~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~--------------------~~~~h~~-~v~~~~~  222 (437)
T 3gre_A          165 FGKNEYAVRMRAFVNEE-KSLLVALTNLSRVIIFDIRTLERLQII--------------------ENSPRHG-AVSSICI  222 (437)
T ss_dssp             GSSCCCEEEEEEEECSS-CEEEEEEETTSEEEEEETTTCCEEEEE--------------------ECCGGGC-CEEEEEE
T ss_pred             cccccCceEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeeeEEE--------------------ccCCCCC-ceEEEEE
Confidence             1344667777  5577 789999999999999999987655443                    22  333 6999999


Q ss_pred             cCCCCEEEEEecCCeEEEEECCC
Q 004745          257 SPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       257 sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +|++++|++++.||.|++||+++
T Consensus       223 s~~~~~l~s~~~dg~i~iwd~~~  245 (437)
T 3gre_A          223 DEECCVLILGTTRGIIDIWDIRF  245 (437)
T ss_dssp             CTTSCEEEEEETTSCEEEEETTT
T ss_pred             CCCCCEEEEEcCCCeEEEEEcCC
Confidence            99999999999999999999987

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.3e-30  Score=278.43  Aligned_cols=214  Identities=16%  Similarity=0.232  Sum_probs=175.8

Q ss_pred             hccccEee--eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            8 RLSQEREL--EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         8 ~~~~~~~l--~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      +.++.+.+  .+|...|++++|+|+|++||+|+.||+|+|||+.+++++..+ .+|...|.++++++    .+|++|+.|
T Consensus       134 tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~~~----~~l~sgs~d  208 (420)
T 4gga_A          134 SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNS----YILSSGSRS  208 (420)
T ss_dssp             TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEET----TEEEEEETT
T ss_pred             CCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE-eCCCCceEEEeeCC----CEEEEEeCC
Confidence            44555554  467889999999999999999999999999999999999999 79999999998864    689999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      +.+++||.....         ..+..+.+|...+..+.++|++ .++++++.|+.|++|+...++...            
T Consensus       209 ~~i~~~d~~~~~---------~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~------------  266 (420)
T 4gga_A          209 GHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGW------------  266 (420)
T ss_dssp             SEEEEEETTSSS---------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCS------------
T ss_pred             CceeEeeecccc---------eeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccc------------
Confidence            999999998643         3367888999999999999954 899999999999999998876321            


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEE--eCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG--GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                               ..+.....+...|.+++|+|.++.+++++  +.|++|++||+.+++.+..+                    
T Consensus       267 ---------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~--------------------  317 (420)
T 4gga_A          267 ---------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--------------------  317 (420)
T ss_dssp             ---------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE--------------------
T ss_pred             ---------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee--------------------
Confidence                     11222345667899999999978888775  47999999999987654333                    


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEe--cCCeEEEEECCC
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNH  279 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~--~dg~v~iwd~~~  279 (732)
                      ..+.  .+.++.|+|+++.|++++  .|+.|+|||+.+
T Consensus       318 ~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~  353 (420)
T 4gga_A          318 DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPT  353 (420)
T ss_dssp             ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred             cccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence            2222  489999999999998876  589999999866

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.2e-32  Score=285.06  Aligned_cols=178  Identities=16%  Similarity=0.153  Sum_probs=140.8

Q ss_pred             EeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe
Q 004745           46 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE  125 (732)
Q Consensus        46 Wd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  125 (732)
                      |++...+....+ .+|...|++++|+|++ .++|++|+.||.|++||+.+....        ......+|...|.+++|+
T Consensus        58 ~~~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~h~~~v~~~~~~  127 (383)
T 3ei3_B           58 RSLKSYKLHRTA-SPFDRRVTSLEWHPTH-PTTVAVGSKGGDIILWDYDVQNKT--------SFIQGMGPGDAITGMKFN  127 (383)
T ss_dssp             HHHTTCEEEEEE-CCCSSCEEEEEECSSC-TTEEEEEEBTSCEEEEETTSTTCE--------EEECCCSTTCBEEEEEEE
T ss_pred             ccccccceEEec-cCCCCCEEEEEECCCC-CCEEEEEcCCCeEEEEeCCCcccc--------eeeecCCcCCceeEEEeC
Confidence            344556667777 7999999999999983 289999999999999999864321        122334799999999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC
Q 004745          126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS  205 (732)
Q Consensus       126 p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~  205 (732)
                      |+++++|++++.|+.|++||+....                       ...+.....+...|.+++|+|+ +.+|++|+.
T Consensus       128 ~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~  183 (383)
T 3ei3_B          128 QFNTNQLFVSSIRGATTLRDFSGSV-----------------------IQVFAKTDSWDYWYCCVDVSVS-RQMLATGDS  183 (383)
T ss_dssp             TTEEEEEEEEETTTEEEEEETTSCE-----------------------EEEEECCCCSSCCEEEEEEETT-TTEEEEEET
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEeccCCCCCCeEEEEECCC-CCEEEEECC
Confidence            9666899999999999999998532                       1122223345568999999998 789999999


Q ss_pred             CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Q 004745          206 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       206 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~  279 (732)
                      |+.|++||++ .+.+..+                    .+|.. .|.+++|+|+++ +|++++.|+.|++||+.+
T Consensus       184 d~~i~i~d~~-~~~~~~~--------------------~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          184 TGRLLLLGLD-GHEIFKE--------------------KLHKA-KVTHAEFNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             TSEEEEEETT-SCEEEEE--------------------ECSSS-CEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             CCCEEEEECC-CCEEEEe--------------------ccCCC-cEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence            9999999994 3332222                    34544 599999999999 999999999999999887

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.98  E-value=9.8e-32  Score=282.21  Aligned_cols=169  Identities=8%  Similarity=0.040  Sum_probs=135.5

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  138 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  138 (732)
                      ..|..+|++++|+|+  +++|++++.|+.|++||+.+...        .++..+.+|...|.+++|+|+ +++|++++.|
T Consensus         5 ~~~~~~i~~~~~s~~--~~~l~~~~~d~~v~i~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d   73 (372)
T 1k8k_C            5 SFLVEPISCHAWNKD--RTQIAICPNNHEVHIYEKSGNKW--------VQVHELKEHNGQVTGVDWAPD-SNRIVTCGTD   73 (372)
T ss_dssp             ESCSSCCCEEEECTT--SSEEEEECSSSEEEEEEEETTEE--------EEEEEEECCSSCEEEEEEETT-TTEEEEEETT
T ss_pred             cccCCCeEEEEECCC--CCEEEEEeCCCEEEEEeCCCCcE--------EeeeeecCCCCcccEEEEeCC-CCEEEEEcCC
Confidence            468999999999999  58999999999999999986421        146788899999999999995 5899999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      |.|++||+.+++..                       .......+...|.+++|+|+ +.+|++++.|+.|++||++...
T Consensus        74 g~i~vwd~~~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~  129 (372)
T 1k8k_C           74 RNAYVWTLKGRTWK-----------------------PTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQEN  129 (372)
T ss_dssp             SCEEEEEEETTEEE-----------------------EEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTT
T ss_pred             CeEEEEECCCCeee-----------------------eeEEeecCCCceeEEEECCC-CCEEEEEeCCCEEEEEEecCCC
Confidence            99999999776411                       11112345668999999999 7899999999999999998765


Q ss_pred             CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .....          ..+      ..+|.. .|++++|+|++++|++++.||.|++||+..
T Consensus       130 ~~~~~----------~~~------~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (372)
T 1k8k_C          130 DWWVC----------KHI------KKPIRS-TVLSLDWHPNSVLLAAGSCDFKCRIFSAYI  173 (372)
T ss_dssp             TEEEE----------EEE------CTTCCS-CEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred             cceee----------eee------ecccCC-CeeEEEEcCCCCEEEEEcCCCCEEEEEccc
Confidence            31111          000      022333 699999999999999999999999999876

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.98  E-value=6.5e-31  Score=284.94  Aligned_cols=319  Identities=16%  Similarity=0.170  Sum_probs=236.5

Q ss_pred             eEEEEccCCCcCe-EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcE
Q 004745           53 LLHSIETGHSANV-FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  131 (732)
Q Consensus        53 ~~~~~~~~h~~~V-~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  131 (732)
                      ....+ .+|...| .++.|+    +++|++|+.||+|++||+.++          +++..+.+|...|.+++|+|++  +
T Consensus       113 ~~~~l-~~h~~~v~~~~~~~----~~~l~sgs~dg~i~vwd~~~~----------~~~~~~~~h~~~V~~l~~~~~~--~  175 (464)
T 3v7d_B          113 QRTTL-RGHMTSVITCLQFE----DNYVITGADDKMIRVYDSINK----------KFLLQLSGHDGGVWALKYAHGG--I  175 (464)
T ss_dssp             EEEEE-ECCSSSCEEEEEEE----TTEEEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECSTT--E
T ss_pred             ceEEE-cCCCCCcEEEEEEC----CCEEEEEcCCCcEEEEECCCC----------cEEEEEeCCCcCEEEEEEcCCC--E
Confidence            34455 6898875 666664    369999999999999999864          3377888999999999999844  8


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC-CCCEEEEEeCCCeEE
Q 004745          132 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLVGGSDAFAR  210 (732)
Q Consensus       132 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~tg~~dg~v~  210 (732)
                      |++|+.||.|++||+++++.                         +.....|...|.+++|++. ++.+|++|+.|+.|+
T Consensus       176 l~s~s~dg~i~vwd~~~~~~-------------------------~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~  230 (464)
T 3v7d_B          176 LVSGSTDRTVRVWDIKKGCC-------------------------THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH  230 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEE-------------------------EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEE
T ss_pred             EEEEeCCCCEEEEECCCCcE-------------------------EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEE
Confidence            99999999999999987652                         1222356779999999852 268999999999999


Q ss_pred             EEECCCCCCCcccccCCCCCCccccc--cc-cccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceee
Q 004745          211 LYDRRMLPPLTSCQKRMSPPPCVNYF--CP-MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY  287 (732)
Q Consensus       211 iwd~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~  287 (732)
                      +||+++.............+......  .+ ......+|.. .+.++  ++++++|++++.||.|++||+.+++..    
T Consensus       231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~----  303 (464)
T 3v7d_B          231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA-SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCL----  303 (464)
T ss_dssp             EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS-CEEEE--EEETTEEEEEETTSCEEEEETTTTEEE----
T ss_pred             EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc-eEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEE----
Confidence            99999876543321111100000000  00 0001134444 46665  678899999999999999999773210    


Q ss_pred             ecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC
Q 004745          288 TVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI  367 (732)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  367 (732)
                                                                                                      
T Consensus       304 --------------------------------------------------------------------------------  303 (464)
T 3v7d_B          304 --------------------------------------------------------------------------------  303 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhH
Q 004745          368 GPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA  447 (732)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  447 (732)
                                                                                                      
T Consensus       304 --------------------------------------------------------------------------------  303 (464)
T 3v7d_B          304 --------------------------------------------------------------------------------  303 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCC
Q 004745          448 EKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGD  527 (732)
Q Consensus       448 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~  527 (732)
                                                                                                      
T Consensus       304 --------------------------------------------------------------------------------  303 (464)
T 3v7d_B          304 --------------------------------------------------------------------------------  303 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCC
Q 004745          528 EGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQR  607 (732)
Q Consensus       528 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~d  607 (732)
                                     ..+.+|...|.+++|+|++++|++++.++...+|+... .+.+..+.+|...+.++.    ++  
T Consensus       304 ---------------~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~----~~--  361 (464)
T 3v7d_B          304 ---------------YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLR----LS--  361 (464)
T ss_dssp             ---------------EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEE----EC--
T ss_pred             ---------------EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcEEEEE----Ec--
Confidence                           11223445567788888888888887777777788776 778999999998865554    45  


Q ss_pred             CCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccc-cCCCCCCCc
Q 004745          608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIV-SGGAAGPDT  684 (732)
Q Consensus       608 g~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~-~~gh~~~~~  684 (732)
                      +++|++|+.||+|++||+.+++....+. |...+..++|+|++.+|++++ |++|+|||+.+++.+.. +.+|.+++.
T Consensus       362 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~  437 (464)
T 3v7d_B          362 DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIW  437 (464)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEE
Confidence            6999999999999999999998776664 788899999999999999999 99999999999998875 666665543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=2.1e-31  Score=282.99  Aligned_cols=211  Identities=21%  Similarity=0.224  Sum_probs=164.9

Q ss_pred             ceeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCe----eEEEEccCCCcCeEEEEEec-CCCCCEEEEEECCCcEEEEEcC
Q 004745           21 CVNAISWNSKGSLL-ISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLS   94 (732)
Q Consensus        21 ~V~~l~~s~dg~~l-asg~~dg~i~vWd~~~~~----~~~~~~~~h~~~V~~~~~s~-~~~g~~l~s~~~dg~i~vwd~~   94 (732)
                      ....++++|+...+ ++++.||.|+||++....    .+..+ .+|...|++++|+| +  +++|++|+.||+|++||+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~--~~~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHN--DNVIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTC--TTEEEEEETTSEEEEEECC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCC--CCEEEEEeCCCeEEEEEcc
Confidence            45568888877544 457889999999986543    23344 68999999999999 6  5899999999999999998


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                      +.....   ....++..+.+|...|.+++|+|++.++|++++.|+.|++||+++++..              ..+     
T Consensus       113 ~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~~~-----  170 (402)
T 2aq5_A          113 DGGLVL---PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV--------------LTL-----  170 (402)
T ss_dssp             TTCCSS---CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE--------------EEE-----
T ss_pred             CCCCcc---ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc--------------EEE-----
Confidence            643210   0113467888999999999999976689999999999999999876521              000     


Q ss_pred             ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  254 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  254 (732)
                          ....|...|.+++|+|+ +.+|++++.|+.|++||+++.+.+..+.                   .+|.+..+.++
T Consensus       171 ----~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------------~~~~~~~~~~~  226 (402)
T 2aq5_A          171 ----GPDVHPDTIYSVDWSRD-GALICTSCRDKRVRVIEPRKGTVVAEKD-------------------RPHEGTRPVHA  226 (402)
T ss_dssp             ----CTTTCCSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEE-------------------CSSCSSSCCEE
T ss_pred             ----ecCCCCCceEEEEECCC-CCEEEEEecCCcEEEEeCCCCceeeeec-------------------cCCCCCcceEE
Confidence                01346678999999998 7899999999999999999875443321                   22333348899


Q ss_pred             EEcCCCCEEEEE---ecCCeEEEEECCCC
Q 004745          255 TFSPNGEEVLLS---YSGEHVYLMDVNHA  280 (732)
Q Consensus       255 ~~sp~g~~l~~~---~~dg~v~iwd~~~~  280 (732)
                      +|+|++++|++|   +.|+.|++||+.+.
T Consensus       227 ~~~~~~~~l~~g~~~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          227 VFVSEGKILTTGFSRMSERQVALWDTKHL  255 (402)
T ss_dssp             EECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred             EEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence            999999999999   78999999999873

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.98  E-value=3.8e-30  Score=275.42  Aligned_cols=223  Identities=15%  Similarity=0.169  Sum_probs=160.8

Q ss_pred             CceeEEEEcCCC----------CEEEEEeC----CCcEEEEeCC--------------------------CCeeEEEEcc
Q 004745           20 GCVNAISWNSKG----------SLLISGSD----DTHINVWSYS--------------------------SRKLLHSIET   59 (732)
Q Consensus        20 ~~V~~l~~s~dg----------~~lasg~~----dg~i~vWd~~--------------------------~~~~~~~~~~   59 (732)
                      -|..++.|.|+.          .+|+.|+.    .+.|.|.++.                          +++.......
T Consensus        46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  125 (430)
T 2xyi_A           46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI  125 (430)
T ss_dssp             SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred             CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence            577899999965          46777764    3567777542                          1122212225


Q ss_pred             CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC
Q 004745           60 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  139 (732)
Q Consensus        60 ~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  139 (732)
                      .|.+.|++++|+|+. +.+|++++.||.|++||+..............++..+.+|...|.+++|+|++..+|++++.||
T Consensus       126 ~h~~~v~~l~~~p~~-~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  204 (430)
T 2xyi_A          126 NHEGEVNRARYMPQN-ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH  204 (430)
T ss_dssp             EESSCCSEEEEETTE-EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred             cCCCcEEEEEECCCC-CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence            799999999999973 4799999999999999998631111111112457888899999999999997755999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004745          140 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  219 (732)
Q Consensus       140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~  219 (732)
                      .|++||+.......          . .       .........|...|.+++|+|+++.+|++++.|+.|++||+++...
T Consensus       205 ~i~vwd~~~~~~~~----------~-~-------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~  266 (430)
T 2xyi_A          205 TICLWDINATPKEH----------R-V-------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT  266 (430)
T ss_dssp             CEEEEETTSCCBGG----------G-E-------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred             eEEEEeCCCCCCCC----------c-e-------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence            99999998753110          0 0       0011222356778999999996688999999999999999997631


Q ss_pred             CcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Q 004745          220 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~  279 (732)
                      ..          ++..+       ..|.. .|++++|+|+++ +|++|+.||.|++||+++
T Consensus       267 ~~----------~~~~~-------~~~~~-~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~  309 (430)
T 2xyi_A          267 SK----------PSHTV-------DAHTA-EVNCLSFNPYSEFILATGSADKTVALWDLRN  309 (430)
T ss_dssp             SS----------CSEEE-------ECCSS-CEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             Cc----------ceeEe-------ecCCC-CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence            11          11111       23444 599999999987 688999999999999887

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=1.5e-30  Score=279.20  Aligned_cols=166  Identities=16%  Similarity=0.191  Sum_probs=133.4

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  138 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  138 (732)
                      .+|...|+||+|+|.. +++|++|+.||+|+|||+.+....        ....+.+|...|++|+|+|.++++|++++.|
T Consensus       116 ~~~~~~V~~l~~~P~~-~~~lasGs~dg~i~lWd~~~~~~~--------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D  186 (435)
T 4e54_B          116 APFDRRATSLAWHPTH-PSTVAVGSKGGDIMLWNFGIKDKP--------TFIKGIGAGGSITGLKFNPLNTNQFYASSME  186 (435)
T ss_dssp             EECSSCEEEEEECSSC-TTCEEEEETTSCEEEECSSCCSCC--------EEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred             CCCCCCEEEEEEeCCC-CCEEEEEeCCCEEEEEECCCCCce--------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence            5788999999999964 579999999999999999875432        2456778999999999999777999999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      |+|++||+++...                       ..+.....+...+.+++|+|+ +.+|++|+.||.|++||++.. 
T Consensus       187 ~~v~iwd~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~~~-  241 (435)
T 4e54_B          187 GTTRLQDFKGNIL-----------------------RVFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMDGK-  241 (435)
T ss_dssp             SCEEEEETTSCEE-----------------------EEEECCSSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESSSC-
T ss_pred             CEEEEeeccCCce-----------------------eEEeccCCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccCcc-
Confidence            9999999976431                       011122234446788999998 789999999999999998743 


Q ss_pred             CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Q 004745          219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~  279 (732)
                      .+..+                    .+|.. .|++++|+|+++ +|++++.|+.|+|||+++
T Consensus       242 ~~~~~--------------------~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          242 ELWNL--------------------RMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDLRQ  282 (435)
T ss_dssp             BCCCS--------------------BCCSS-CEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred             eeEEE--------------------ecccc-eEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence            22222                    45555 699999999886 788899999999999987

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=3.1e-31  Score=302.13  Aligned_cols=173  Identities=18%  Similarity=0.205  Sum_probs=136.4

Q ss_pred             EEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEE
Q 004745           55 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  134 (732)
Q Consensus        55 ~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  134 (732)
                      ..+ .+|.+.|++++|+|+. +++|+||+.|++|++|++.......     ......+.+|...|.+++|+|++ ++|++
T Consensus       376 ~~l-~~H~~~V~~v~~~~~~-~~~l~s~s~D~~i~~W~~~~~~~~~-----~~~~~~~~~h~~~v~~v~~s~~g-~~l~s  447 (694)
T 3dm0_A          376 GTM-RAHTDMVTAIATPIDN-ADIIVSASRDKSIILWKLTKDDKAY-----GVAQRRLTGHSHFVEDVVLSSDG-QFALS  447 (694)
T ss_dssp             EEE-ECCSSCEEEEECCTTC-CSEEEEEETTSEEEEEECCCSTTCS-----CEEEEEEECCSSCEEEEEECTTS-SEEEE
T ss_pred             hhc-ccCCceeEEEEecCCC-CCEEEEEeCCCcEEEEEccCCCccc-----ccccceecCCCCcEEEEEECCCC-CEEEE
Confidence            345 7999999999999975 5899999999999999998643211     12346788999999999999954 89999


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEEC
Q 004745          135 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  214 (732)
Q Consensus       135 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~  214 (732)
                      |+.||.|++||+.++..                         +....+|...|.+++|+|+ +.+|++|+.|++|++||+
T Consensus       448 gs~Dg~v~vwd~~~~~~-------------------------~~~~~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~iwd~  501 (694)
T 3dm0_A          448 GSWDGELRLWDLAAGVS-------------------------TRRFVGHTKDVLSVAFSLD-NRQIVSASRDRTIKLWNT  501 (694)
T ss_dssp             EETTSEEEEEETTTTEE-------------------------EEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECT
T ss_pred             EeCCCcEEEEECCCCcc-------------------------eeEEeCCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEEC
Confidence            99999999999987652                         1122357778999999999 789999999999999998


Q ss_pred             CCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC--CEEEEEecCCeEEEEECCC
Q 004745          215 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g--~~l~~~~~dg~v~iwd~~~  279 (732)
                      .........                 ....+|.. .|.+++|+|++  ..|++++.|+.|++||+.+
T Consensus       502 ~~~~~~~~~-----------------~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~  550 (694)
T 3dm0_A          502 LGECKYTIS-----------------EGGEGHRD-WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN  550 (694)
T ss_dssp             TSCEEEEEC-----------------SSTTSCSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred             CCCcceeec-----------------cCCCCCCC-cEEEEEEeCCCCcceEEEEeCCCeEEEEECCC
Confidence            643211000                 00134555 59999999987  6899999999999999876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=9.4e-30  Score=269.97  Aligned_cols=210  Identities=17%  Similarity=0.275  Sum_probs=175.3

Q ss_pred             hccccEeeec-cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745            8 RLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus         8 ~~~~~~~l~~-h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      +.+....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|++    ++|++++.||
T Consensus       122 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~----~~l~~~~~dg  196 (401)
T 4aez_A          122 SGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSWNR----HVLSSGSRSG  196 (401)
T ss_dssp             TCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEET----TEEEEEETTS
T ss_pred             CCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEECC----CEEEEEcCCC
Confidence            3445555555 8999999999999999999999999999999999999998 79999999999953    6999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      .|++||++...         ..+..+.+|...|.+++|+| ++++|++++.|+.|++||+++++.               
T Consensus       197 ~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~---------------  251 (401)
T 4aez_A          197 AIHHHDVRIAN---------HQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIP---------------  251 (401)
T ss_dssp             EEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSE---------------
T ss_pred             CEEEEecccCc---------ceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCc---------------
Confidence            99999998532         33678889999999999999 458999999999999999987652               


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe--CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                                +.....|...|.+++|+|++..++++++  .|+.|++||+++++.+..+                    .
T Consensus       252 ----------~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~--------------------~  301 (401)
T 4aez_A          252 ----------KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV--------------------D  301 (401)
T ss_dssp             ----------EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE--------------------E
T ss_pred             ----------cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE--------------------e
Confidence                      1122346668999999998778888876  7999999999987654433                    1


Q ss_pred             CCccccEEEEEEcCCCCEEEEEe--cCCeEEEEECCC
Q 004745          245 GRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNH  279 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g~~l~~~~--~dg~v~iwd~~~  279 (732)
                       +. ..|.+++|+|++++|++++  .||.|++||+.+
T Consensus       302 -~~-~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          302 -AG-SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             -CS-SCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             -CC-CcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence             11 2599999999999999954  799999999876

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=1.7e-30  Score=279.91  Aligned_cols=160  Identities=20%  Similarity=0.256  Sum_probs=127.8

Q ss_pred             eeEEEEccCCCcCe-EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCc
Q 004745           52 KLLHSIETGHSANV-FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH  130 (732)
Q Consensus        52 ~~~~~~~~~h~~~V-~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  130 (732)
                      +....+ .+|.+.| .++.+  +  |++|++|+.||+|++||+.++          .++..+.+|...|.+++|++   +
T Consensus       109 ~~~~~l-~~h~~~v~~~~~~--~--g~~l~sg~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~---~  170 (445)
T 2ovr_B          109 KSPKVL-KGHDDHVITCLQF--C--GNRIVSGSDDNTLKVWSAVTG----------KCLRTLVGHTGGVWSSQMRD---N  170 (445)
T ss_dssp             CCCEEE-ECSTTSCEEEEEE--E--TTEEEEEETTSCEEEEETTTC----------CEEEECCCCSSCEEEEEEET---T
T ss_pred             ceeEEe-cccCCCcEEEEEE--c--CCEEEEEECCCcEEEEECCCC----------cEEEEEcCCCCCEEEEEecC---C
Confidence            344555 7898875 55554  4  479999999999999999864          33678889999999999973   6


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004745          131 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  210 (732)
Q Consensus       131 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~  210 (732)
                      ++++++.||.|++||+.+++.                         +....+|...|.++.|+   +..+++|+.||.|+
T Consensus       171 ~l~s~~~dg~i~vwd~~~~~~-------------------------~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~  222 (445)
T 2ovr_B          171 IIISGSTDRTLKVWNAETGEC-------------------------IHTLYGHTSTVRCMHLH---EKRVVSGSRDATLR  222 (445)
T ss_dssp             EEEEEETTSCEEEEETTTTEE-------------------------EEEECCCSSCEEEEEEE---TTEEEEEETTSEEE
T ss_pred             EEEEEeCCCeEEEEECCcCcE-------------------------EEEECCCCCcEEEEEec---CCEEEEEeCCCEEE
Confidence            899999999999999987652                         12223567789999996   45899999999999


Q ss_pred             EEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      +||+++++.+..+                    .+|.. .|.+++|  ++++|++++.||.|++||+.++
T Consensus       223 ~wd~~~~~~~~~~--------------------~~~~~-~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~  269 (445)
T 2ovr_B          223 VWDIETGQCLHVL--------------------MGHVA-AVRCVQY--DGRRVVSGAYDFMVKVWDPETE  269 (445)
T ss_dssp             EEESSSCCEEEEE--------------------ECCSS-CEEEEEE--CSSCEEEEETTSCEEEEEGGGT
T ss_pred             EEECCCCcEEEEE--------------------cCCcc-cEEEEEE--CCCEEEEEcCCCEEEEEECCCC
Confidence            9999987654433                    34444 5999999  7889999999999999998873

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=1.3e-30  Score=272.74  Aligned_cols=174  Identities=17%  Similarity=0.192  Sum_probs=134.4

Q ss_pred             eeEEEEccCCCcCeEEEEEecC---CCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecc-----ccCceeEEE
Q 004745           52 KLLHSIETGHSANVFCTKFVPE---TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-----HTRRVKKLA  123 (732)
Q Consensus        52 ~~~~~~~~~h~~~V~~~~~s~~---~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~  123 (732)
                      ++...+..+|...|++++|+|+   + ...+++++.++.|++||+.+...          +..+..     |...|++++
T Consensus         8 ~~~~~~~~~h~~~v~~i~~~p~~~~~-~~~~~~~~~~~~v~vw~~~~~~~----------~~~~~~~~~~~~~~~v~~~~   76 (366)
T 3k26_A            8 KCVNSLKEDHNQPLFGVQFNWHSKEG-DPLVFATVGSNRVTLYECHSQGE----------IRLLQSYVDADADENFYTCA   76 (366)
T ss_dssp             EEEEEEECTTCSCEEEEEECTTCCTT-SCEEEEEEETTEEEEEEECGGGC----------EEEEEEEECSCTTCCEEEEE
T ss_pred             EEEEEeecCCCCceEEEEEecccCCC-CceEEEECCCCEEEEEEcCCCcE----------EEeeeeccccCCCCcEEEEE
Confidence            3444565799999999999984   2 35677777778999999986422          333333     567899999


Q ss_pred             EecCC---CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEE
Q 004745          124 VEVGN---PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL  200 (732)
Q Consensus       124 ~~p~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l  200 (732)
                      |+|+.   +.+|++++.||.|++||+.+++..                         .....|...|.+++|+|+++.+|
T Consensus        77 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-------------------------~~~~~~~~~i~~~~~~~~~~~~l  131 (366)
T 3k26_A           77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCI-------------------------KHYVGHGNAINELKFHPRDPNLL  131 (366)
T ss_dssp             EEECTTTCCEEEEEEETTCEEEEECTTTCCEE-------------------------EEEESCCSCEEEEEECSSCTTEE
T ss_pred             eccCCCCCCCEEEEecCCCEEEEEEchhceEe-------------------------eeecCCCCcEEEEEECCCCCCEE
Confidence            99963   369999999999999999876521                         11234667999999999448899


Q ss_pred             EEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          201 LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       201 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ++|+.||.|++||+++.+.+..+..          +       .+|.. .|.+++|+|++++|++++.||.|++||+.+
T Consensus       132 ~s~~~dg~i~iwd~~~~~~~~~~~~----------~-------~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          132 LSVSKDHALRLWNIQTDTLVAIFGG----------V-------EGHRD-EVLSADYDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECS----------T-------TSCSS-CEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred             EEEeCCCeEEEEEeecCeEEEEecc----------c-------ccccC-ceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence            9999999999999998754433210          0       23444 699999999999999999999999999987

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=4.3e-31  Score=280.07  Aligned_cols=186  Identities=14%  Similarity=0.104  Sum_probs=131.2

Q ss_pred             ccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC---CC---cE
Q 004745           58 ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NP---HV  131 (732)
Q Consensus        58 ~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~---~~  131 (732)
                      ..+|.+.|++++|+|    ++|++|+.||.|++||+.......    ...++..+.+|...|++++|+|+   ++   ++
T Consensus        12 ~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A           12 GKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNEN----PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             SSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCC----GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCccccc----CCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            379999999999988    489999999999999998743110    01246788899999999999994   27   89


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC--ccceEEEEec----CCCCCE-EEEEe
Q 004745          132 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ--TLSLKSCDIS----STRPHL-LLVGG  204 (732)
Q Consensus       132 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~----~~~~~~-l~tg~  204 (732)
                      |++++.||.|++||+.+++...         ...+.        .+.....+  ...|.+++|+    |+ +.+ |++++
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~---------~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~l~~~~  145 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETK---------KVIFE--------KLDLLDSDMKKHSFWALKWGASNDRL-LSHRLVATD  145 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTC---------CEEEE--------EECCSCTTGGGSCEEEEEEECCC-----CEEEEEEE
T ss_pred             EEEEcCCCCEEEEEccCCcccc---------cccce--------eecccccccCCCcEEEEEEeeccCCC-CceEEEEEe
Confidence            9999999999999998776310         00000        11111111  4689999999    88 778 99999


Q ss_pred             CCCeEEEEECCC------CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          205 SDAFARLYDRRM------LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       205 ~dg~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                      .||.|++||+++      .+.+.-.        ....+.........|.. .|++++|+|++ +|++++.||.|++||+.
T Consensus       146 ~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~i~i~d~~  215 (397)
T 1sq9_A          146 VKGTTYIWKFHPFADESNSLTLNWS--------PTLELQGTVESPMTPSQ-FATSVDISERG-LIATGFNNGTVQISELS  215 (397)
T ss_dssp             TTSCEEEEEEESSSSHHHHTTTCCC--------CEEEEEEEECCSSSSCC-CCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred             CCCcEEEEeCCccccccccceeecc--------CcceeeeeeccccCCCC-CceEEEECCCc-eEEEEeCCCcEEEEECC
Confidence            999999999987      4433200        00011000000011223 59999999999 99999999999999987


Q ss_pred             C
Q 004745          279 H  279 (732)
Q Consensus       279 ~  279 (732)
                      +
T Consensus       216 ~  216 (397)
T 1sq9_A          216 T  216 (397)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.3e-30  Score=271.15  Aligned_cols=175  Identities=13%  Similarity=0.123  Sum_probs=138.1

Q ss_pred             eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC-CCc
Q 004745           52 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPH  130 (732)
Q Consensus        52 ~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~  130 (732)
                      +.+..+ .+|...|++++|+|+  +++|++|+.||.|++||+.....        ..+..+.+|...|++++|+|+ +++
T Consensus         2 ~~~~~~-~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~   70 (379)
T 3jrp_A            2 SMVVIA-NAHNELIHDAVLDYY--GKRLATCSSDKTIKIFEVEGETH--------KLIDTLTGHEGPVWRVDWAHPKFGT   70 (379)
T ss_dssp             ---CCE-EECCCCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEE--------EEEEEECCCSSCEEEEEECCGGGCS
T ss_pred             CccEEe-cCCcccEEEEEEcCC--CCEEEEEECCCcEEEEecCCCcc--------eeeeEecCCCCcEEEEEeCCCCCCC
Confidence            344555 799999999999999  58999999999999999974332        336788899999999999874 258


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeE
Q 004745          131 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFA  209 (732)
Q Consensus       131 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v  209 (732)
                      +|++++.||.|++||+.+++.                       ..+.....|...|.+++|+|+. +.+|++++.|+.|
T Consensus        71 ~l~s~~~dg~v~iwd~~~~~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i  127 (379)
T 3jrp_A           71 ILASCSYDGKVLIWKEENGRW-----------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV  127 (379)
T ss_dssp             EEEEEETTSCEEEEEEETTEE-----------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEE
T ss_pred             EEEEeccCCEEEEEEcCCCce-----------------------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcE
Confidence            999999999999999987641                       0122223466789999999984 5799999999999


Q ss_pred             EEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-------------CCCEEEEEecCCeEEEEE
Q 004745          210 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-------------NGEEVLLSYSGEHVYLMD  276 (732)
Q Consensus       210 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-------------~g~~l~~~~~dg~v~iwd  276 (732)
                      ++||+++.......           .+       .+|.. .|++++|+|             ++++|++++.||.|++||
T Consensus       128 ~v~d~~~~~~~~~~-----------~~-------~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  188 (379)
T 3jrp_A          128 SVVEFKENGTTSPI-----------II-------DAHAI-GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK  188 (379)
T ss_dssp             EEEECCTTSCCCEE-----------EE-------ECCTT-CEEEEEECCCC----------CTTCEEEEEETTSCEEEEE
T ss_pred             EEEecCCCCceeeE-----------Ee-------cCCCC-ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEE
Confidence            99999876432211           00       23444 599999999             699999999999999999


Q ss_pred             CCC
Q 004745          277 VNH  279 (732)
Q Consensus       277 ~~~  279 (732)
                      +.+
T Consensus       189 ~~~  191 (379)
T 3jrp_A          189 YNS  191 (379)
T ss_dssp             EET
T ss_pred             ecC
Confidence            876

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.2e-30  Score=267.39  Aligned_cols=300  Identities=14%  Similarity=0.139  Sum_probs=239.0

Q ss_pred             eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004745           53 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  132 (732)
Q Consensus        53 ~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  132 (732)
                      ....+ .+|...|++++|+|+  +++|++++.||.|++||+.+.          ..+..+.+|...|.+++|+|+ +++|
T Consensus        24 ~~~~l-~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~~-~~~l   89 (369)
T 3zwl_B           24 KAIKL-TGHERPLTQVKYNKE--GDLLFSCSKDSSASVWYSLNG----------ERLGTLDGHTGTIWSIDVDCF-TKYC   89 (369)
T ss_dssp             EEEEE-ECCSSCEEEEEECTT--SCEEEEEESSSCEEEEETTTC----------CEEEEECCCSSCEEEEEECTT-SSEE
T ss_pred             ccEEE-EEeeceEEEEEEcCC--CCEEEEEeCCCEEEEEeCCCc----------hhhhhhhhcCCcEEEEEEcCC-CCEE
Confidence            34445 799999999999998  589999999999999999864          336788899999999999995 5899


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-----C
Q 004745          133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----A  207 (732)
Q Consensus       133 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-----g  207 (732)
                      ++++.||.|++||+.+++..              ..        +    .+...+.+++|+|+ +.+|++++.+     +
T Consensus        90 ~s~~~dg~i~iwd~~~~~~~--------------~~--------~----~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g  142 (369)
T 3zwl_B           90 VTGSADYSIKLWDVSNGQCV--------------AT--------W----KSPVPVKRVEFSPC-GNYFLAILDNVMKNPG  142 (369)
T ss_dssp             EEEETTTEEEEEETTTCCEE--------------EE--------E----ECSSCEEEEEECTT-SSEEEEEECCBTTBCC
T ss_pred             EEEeCCCeEEEEECCCCcEE--------------EE--------e----ecCCCeEEEEEccC-CCEEEEecCCccCCCC
Confidence            99999999999999887621              00        0    13447999999999 7899999998     9


Q ss_pred             eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc-cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCccee
Q 004745          208 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS-SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR  286 (732)
Q Consensus       208 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~  286 (732)
                      .|++||+........+......  .+..+       ..+. ...+.+++|+|++++|++++.||.|++||+.+..     
T Consensus       143 ~i~~~d~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----  208 (369)
T 3zwl_B          143 SINIYEIERDSATHELTKVSEE--PIHKI-------ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-----  208 (369)
T ss_dssp             EEEEEEEEECTTTCCEEEECSS--CSEEE-------ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-----
T ss_pred             EEEEEEecCCccceeecccccc--eeeec-------cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-----
Confidence            9999999877544333211100  00000       1111 1159999999999999999999999999987611     


Q ss_pred             eecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCC
Q 004745          287 YTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSG  366 (732)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (732)
                                                                                                      
T Consensus       209 --------------------------------------------------------------------------------  208 (369)
T 3zwl_B          209 --------------------------------------------------------------------------------  208 (369)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhh
Q 004745          367 IGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  446 (732)
Q Consensus       367 v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  446 (732)
                                                                                                      
T Consensus       209 --------------------------------------------------------------------------------  208 (369)
T 3zwl_B          209 --------------------------------------------------------------------------------  208 (369)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCC
Q 004745          447 AEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPG  526 (732)
Q Consensus       447 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~  526 (732)
                                                                                                      
T Consensus       209 --------------------------------------------------------------------------------  208 (369)
T 3zwl_B          209 --------------------------------------------------------------------------------  208 (369)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccC
Q 004745          527 DEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQ  606 (732)
Q Consensus       527 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~  606 (732)
                                                                              +.+..+.+|...+.++.    |+|
T Consensus       209 --------------------------------------------------------~~~~~~~~~~~~v~~~~----~~~  228 (369)
T 3zwl_B          209 --------------------------------------------------------EYVDSIDLHEKSISDMQ----FSP  228 (369)
T ss_dssp             --------------------------------------------------------EEEEEEECCSSCEEEEE----ECT
T ss_pred             --------------------------------------------------------EeEEEEecCCCceeEEE----ECC
Confidence                                                                    01223344555544454    699


Q ss_pred             CCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCC--------------cEEEEcCCCCCC
Q 004745          607 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDN--------------TIKIWTPSASVP  672 (732)
Q Consensus       607 dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~--------------~i~vW~~~~~~~  672 (732)
                      ++++|++++.|+.|++||+.+++++..+. |...+++++|+|++++|++++.++              .|++||..++++
T Consensus       229 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  307 (369)
T 3zwl_B          229 DLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE  307 (369)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred             CCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence            99999999999999999999999999998 889999999999999999999998              899999999999


Q ss_pred             ccccCCCCCCCc-----hhHHHHHHHHHHHhhhccccccch
Q 004745          673 SIVSGGAAGPDT-----ADVLEAMESNQRKLSRNREHSLSY  708 (732)
Q Consensus       673 ~~~~~gh~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  708 (732)
                      +..+.+|.+++.     ++...++....+...++|+.....
T Consensus       308 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          308 IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence            999999988874     455667777888889999986543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.2e-30  Score=262.63  Aligned_cols=167  Identities=12%  Similarity=0.099  Sum_probs=130.7

Q ss_pred             eCCCC-eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe
Q 004745           47 SYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE  125 (732)
Q Consensus        47 d~~~~-~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  125 (732)
                      |..++ +....+ .+|.+.|++++| |+  +.+|++++.||.|++||+.+.          .....+..|...|.+++|+
T Consensus         3 d~~~~~~~~~~l-~~h~~~v~~~~~-~~--~~~l~s~~~dg~v~vw~~~~~----------~~~~~~~~~~~~v~~~~~~   68 (313)
T 3odt_A            3 DPFTGYQLSATL-KGHDQDVRDVVA-VD--DSKVASVSRDGTVRLWSKDDQ----------WLGTVVYTGQGFLNSVCYD   68 (313)
T ss_dssp             --CCCCEEEEEE-CCCSSCEEEEEE-EE--TTEEEEEETTSEEEEEEESSS----------EEEEEEEECSSCEEEEEEE
T ss_pred             CccccHHHHHHh-hCCCCCcEEEEe-cC--CCEEEEEEcCCcEEEEECCCC----------EEEEEeecCCccEEEEEEC
Confidence            33344 566666 899999999999 77  489999999999999999753          2356778899999999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC
Q 004745          126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS  205 (732)
Q Consensus       126 p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~  205 (732)
                      |+ +++|++++.||.|++|++......                      ..+.....|...|.++.|+   +.+|++++.
T Consensus        69 ~~-~~~l~~~~~dg~i~~~~~~~~~~~----------------------~~~~~~~~~~~~i~~~~~~---~~~l~~~~~  122 (313)
T 3odt_A           69 SE-KELLLFGGKDTMINGVPLFATSGE----------------------DPLYTLIGHQGNVCSLSFQ---DGVVISGSW  122 (313)
T ss_dssp             TT-TTEEEEEETTSCEEEEETTCCTTS----------------------CC-CEECCCSSCEEEEEEE---TTEEEEEET
T ss_pred             CC-CCEEEEecCCCeEEEEEeeecCCC----------------------CcccchhhcccCEEEEEec---CCEEEEEeC
Confidence            95 589999999999999999775421                      0122234567789999994   569999999


Q ss_pred             CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEE
Q 004745          206 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMD  276 (732)
Q Consensus       206 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd  276 (732)
                      |+.|++||  ..+.+..+                    ..|.. .+.+++|+| ++++|++++.||.|++||
T Consensus       123 d~~i~~~d--~~~~~~~~--------------------~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d  171 (313)
T 3odt_A          123 DKTAKVWK--EGSLVYNL--------------------QAHNA-SVWDAKVVSFSENKFLTASADKTIKLWQ  171 (313)
T ss_dssp             TSEEEEEE--TTEEEEEE--------------------ECCSS-CEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CCCEEEEc--CCcEEEec--------------------ccCCC-ceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence            99999999  22222111                    23444 599999998 999999999999999998

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=1e-30  Score=272.71  Aligned_cols=178  Identities=15%  Similarity=0.229  Sum_probs=131.4

Q ss_pred             CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEec
Q 004745           50 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV  126 (732)
Q Consensus        50 ~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p  126 (732)
                      ..+.+..+..+|...|.+++|+|++ ..++++++.   |+.|++||+.++...         .....+|...|.+++|+|
T Consensus         6 ~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~~~~s~~~~d~~v~iw~~~~~~~~---------~~~~~~~~~~v~~~~~~~   75 (357)
T 3i2n_A            6 KPQIIAHIQKGFNYTVFDCKWVPCS-AKFVTMGNFARGTGVIQLYEIQHGDLK---------LLREIEKAKPIKCGTFGA   75 (357)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECTTS-SEEEEEEC--CCCEEEEEEEECSSSEE---------EEEEEEESSCEEEEECTT
T ss_pred             hhHHhhhhccCCCCceEEEEEcCCC-ceEEEecCccCCCcEEEEEeCCCCccc---------ceeeecccCcEEEEEEcC
Confidence            3445555557899999999999984 245556665   999999999864311         122337899999999999


Q ss_pred             CC--CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEE------ecCCCCC
Q 004745          127 GN--PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD------ISSTRPH  198 (732)
Q Consensus       127 ~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~------~~~~~~~  198 (732)
                      ++  +.+|++++.||.|++||+.+++..                        +.....|...|.++.      |+|+ +.
T Consensus        76 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------------------~~~~~~~~~~v~~~~~~~~~~~s~~-~~  130 (357)
T 3i2n_A           76 TSLQQRYLATGDFGGNLHIWNLEAPEMP------------------------VYSVKGHKEIINAIDGIGGLGIGEG-AP  130 (357)
T ss_dssp             CCTTTCCEEEEETTSCEEEECTTSCSSC------------------------SEEECCCSSCEEEEEEESGGGCC-C-CC
T ss_pred             CCCCCceEEEecCCCeEEEEeCCCCCcc------------------------EEEEEecccceEEEeeccccccCCC-cc
Confidence            64  589999999999999999877521                        112235666889985      4677 78


Q ss_pred             EEEEEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCCccccEEEEE----EcCCCCEEEEEecCCeEE
Q 004745          199 LLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT----FSPNGEEVLLSYSGEHVY  273 (732)
Q Consensus       199 ~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~----~sp~g~~l~~~~~dg~v~  273 (732)
                      +|++++.|+.|++||+++.+ .+..+...                 .++....+.+++    |+|++++|++++.||.|+
T Consensus       131 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~  193 (357)
T 3i2n_A          131 EIVTGSRDGTVKVWDPRQKDDPVANMEPV-----------------QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIK  193 (357)
T ss_dssp             EEEEEETTSCEEEECTTSCSSCSEEECCC-----------------TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEE
T ss_pred             EEEEEeCCCeEEEEeCCCCCCcceecccc-----------------CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEE
Confidence            99999999999999999875 33322110                 222233588888    788999999999999999


Q ss_pred             EEECCC
Q 004745          274 LMDVNH  279 (732)
Q Consensus       274 iwd~~~  279 (732)
                      +||+++
T Consensus       194 i~d~~~  199 (357)
T 3i2n_A          194 LFDLRN  199 (357)
T ss_dssp             EEETTT
T ss_pred             EEECcc
Confidence            999887

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3e-30  Score=271.44  Aligned_cols=270  Identities=14%  Similarity=0.153  Sum_probs=213.2

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~--~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      +++..+++|.++|++++|+|++++||+|+.||.|+|||+.  +++.+..+ .+|...|++++|+|+.++.+|++++.||.
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            5678899999999999999999999999999999999998  55677777 79999999999987633489999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      |++||+.+...        ..+..+..|...|.+++|+|++ +.+|++++.|+.|++||++.....              
T Consensus        81 v~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--------------  138 (379)
T 3jrp_A           81 VLIWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--------------  138 (379)
T ss_dssp             EEEEEEETTEE--------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC--------------
T ss_pred             EEEEEcCCCce--------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce--------------
Confidence            99999986431        2367788899999999999962 589999999999999999876422              


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCC------------CCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccc
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISST------------RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  234 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~------------~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  234 (732)
                               .......|...|.+++|+|.            ++.+|++++.|+.|++||+++.......         ..
T Consensus       139 ---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------~~  200 (379)
T 3jrp_A          139 ---------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL---------ES  200 (379)
T ss_dssp             ---------CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE---------EE
T ss_pred             ---------eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee---------EE
Confidence                     01111245668999999994            3789999999999999999876432111         11


Q ss_pred             cccccccccCCCccccEEEEEEcCC---CCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCC
Q 004745          235 YFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI  311 (732)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~l~~sp~---g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (732)
                      .+       .+|.. .|++++|+|+   +++|++++.||.|++||+.++.......           ......+...+.+
T Consensus       201 ~~-------~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~v~~  261 (379)
T 3jrp_A          201 TL-------EGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT-----------LLKEEKFPDVLWR  261 (379)
T ss_dssp             EE-------CCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE-----------ESSSSCCSSCEEE
T ss_pred             EE-------ecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceee-----------eeccccCCCcEEE
Confidence            11       34544 6999999999   8999999999999999999854321111           1122345667888


Q ss_pred             CccCCCccccccccccCcchhhHHHHHHHhhhhcCC
Q 004745          312 HDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGK  347 (732)
Q Consensus       312 ~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~  347 (732)
                      ++|+|+|+.++   +++.|+.+++     |++..+.
T Consensus       262 ~~~s~~g~~l~---~~~~dg~i~i-----w~~~~~~  289 (379)
T 3jrp_A          262 ASWSLSGNVLA---LSGGDNKVTL-----WKENLEG  289 (379)
T ss_dssp             EEECSSSCCEE---EEESSSSEEE-----EEEEETT
T ss_pred             EEEcCCCCEEE---EecCCCcEEE-----EeCCCCC
Confidence            99999999999   9999999999     9887544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=4e-29  Score=259.94  Aligned_cols=211  Identities=10%  Similarity=0.058  Sum_probs=139.8

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-EEEECCCc
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAE   87 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-~s~~~dg~   87 (732)
                      .+++..+.+|..+|++++|+|||++||+|+.++ ++|||+.+++.+... ..  ..+..+++.++.  +.+ ++++.|++
T Consensus         9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~-~~--~~~~~~~~~~~~--~~~~~~~~~d~~   82 (355)
T 3vu4_A            9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ-EM--RHLSKVRMLHRT--NYVAFVTGVKEV   82 (355)
T ss_dssp             ----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE-EC--SCCCEEEECTTS--SEEEEECSSTTE
T ss_pred             cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee-ec--CCeEEEEEcCCC--CEEEEEECCccE
Confidence            445667789999999999999999999998765 899999988776654 22  247788888874  555 67788899


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCCCCCCCCCcccceEE
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCPPAGSSHQECRNIL  166 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~  166 (732)
                      |++||+.++.          ++..+. |...|.++.++++   .++.+ .|+.|++||+.+. +...             
T Consensus        83 v~iWd~~~~~----------~~~~~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~-------------  134 (355)
T 3vu4_A           83 VHIWDDVKKQ----------DVSRIK-VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRIT-------------  134 (355)
T ss_dssp             EEEEETTTTE----------EEEEEE-CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSS-------------
T ss_pred             EEEEECCCCc----------EEEEEE-CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeE-------------
Confidence            9999998642          245554 6779999999873   34444 4789999999887 3210             


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEE--EeCCCeEEEEECCCCCCCcccccCCCC---CCcccccccccc
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV--GGSDAFARLYDRRMLPPLTSCQKRMSP---PPCVNYFCPMHL  241 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t--g~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  241 (732)
                                  ....   ....+++++   .++++  |+.||.|++||+++.+...........   .+++..+     
T Consensus       135 ------------~~~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-----  191 (355)
T 3vu4_A          135 ------------DDIR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-----  191 (355)
T ss_dssp             ------------CCEE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEE-----
T ss_pred             ------------Eecc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE-----
Confidence                        0000   233455665   35655  588999999999976422111000000   0001222     


Q ss_pred             ccCCCccccEEEEEEcCCCCEEEEEecCCe-EEEEECCC
Q 004745          242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEH-VYLMDVNH  279 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~-v~iwd~~~  279 (732)
                        .+|.. .|++++|+|+|++|++++.|++ |++||+.+
T Consensus       192 --~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~  227 (355)
T 3vu4_A          192 --KAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTED  227 (355)
T ss_dssp             --CCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred             --EccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence              55665 6999999999999999999998 99999887

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-28  Score=265.33  Aligned_cols=209  Identities=10%  Similarity=0.129  Sum_probs=163.0

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---eEEEEcc------------------------------------
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIET------------------------------------   59 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~---~~~~~~~------------------------------------   59 (732)
                      ..++.+++|+|+|++|+++ .++.|++||+.+++   .+..+..                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4689999999999977766 46899999999988   5555521                                    


Q ss_pred             -----------------CCCcCeEEEEEecCCCCCEE-EEEECCCcEEEEEcCCCCCCCCCCCCCCCceeec--cccCce
Q 004745           60 -----------------GHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRV  119 (732)
Q Consensus        60 -----------------~h~~~V~~~~~s~~~~g~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v  119 (732)
                                       +|...|.+++|+|+  +++| ++++.||.|++||+....+        .++..+.  .|...|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v  152 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD--ESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRP  152 (450)
T ss_dssp             -----------------CCCCCEEEEEECTT--SSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCE
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCC--CCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCc
Confidence                             23347999999999  4775 8999999999999982112        2245554  567899


Q ss_pred             eEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC--CC
Q 004745          120 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST--RP  197 (732)
Q Consensus       120 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~  197 (732)
                      ++++|+|++ ++|++++.+|.|++|++.+.+....                     ......+|...|.+++|+|+  ++
T Consensus       153 ~~~~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~---------------------~~~~~~~h~~~v~~~~~sp~~~~~  210 (450)
T 2vdu_B          153 NAISIAEDD-TTVIIADKFGDVYSIDINSIPEEKF---------------------TQEPILGHVSMLTDVHLIKDSDGH  210 (450)
T ss_dssp             EEEEECTTS-SEEEEEETTSEEEEEETTSCCCSSC---------------------CCCCSEECSSCEEEEEEEECTTSC
T ss_pred             eEEEEcCCC-CEEEEEeCCCcEEEEecCCcccccc---------------------cceeeecccCceEEEEEcCCCCCC
Confidence            999999955 8999999999999999987763210                     11123346678999999997  25


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 004745          198 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  277 (732)
Q Consensus       198 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~  277 (732)
                      .+|++|+.|+.|++||+++.+.+..+.                   .+|.. .|++++|+ ++++|++++.|+.|++||+
T Consensus       211 ~~l~s~~~d~~i~vwd~~~~~~~~~~~-------------------~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~  269 (450)
T 2vdu_B          211 QFIITSDRDEHIKISHYPQCFIVDKWL-------------------FGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDW  269 (450)
T ss_dssp             EEEEEEETTSCEEEEEESCTTCEEEEC-------------------CCCSS-CEEEEEEC-STTEEEEEESSSEEEEEET
T ss_pred             cEEEEEcCCCcEEEEECCCCceeeeee-------------------cCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEEC
Confidence            699999999999999998775443310                   34554 69999999 9999999999999999999


Q ss_pred             CCCC
Q 004745          278 NHAG  281 (732)
Q Consensus       278 ~~~~  281 (732)
                      .+++
T Consensus       270 ~~~~  273 (450)
T 2vdu_B          270 KTGK  273 (450)
T ss_dssp             TTCC
T ss_pred             CCCc
Confidence            9854

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=3.9e-29  Score=259.11  Aligned_cols=159  Identities=8%  Similarity=0.070  Sum_probs=129.5

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCc-EEEEEeC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH-VVWSASE  137 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-~l~s~s~  137 (732)
                      .+|.+.|++++|+|+  +++|++++.|+.|++|++......       .+...+.+|...|.+++|+|+ ++ +|++++.
T Consensus         8 ~~h~~~v~~~~~s~~--~~~l~~~~~d~~v~iw~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~   77 (342)
T 1yfq_A            8 QAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKN-------VDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTV   77 (342)
T ss_dssp             SCCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETTTTE-------EEEEEEEECSSCEEEEEEEES-SSEEEEEEET
T ss_pred             cCCCCcEEEEEEcCC--CCEEEEEcCCCeEEEEEeCCCCcc-------ccceeeeecCCceEEEEECCC-CCcEEEEEcC
Confidence            689999999999998  589999999999999999864311       124556689999999999995 48 9999999


Q ss_pred             CCcEEEEEC-CCCCCCCCCCCCCcccceEEeeccCCccccccCCCC--CccceEEEEecCCCCCEEEEEeCCCeEEEEEC
Q 004745          138 DGTLRQHDF-RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK--QTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  214 (732)
Q Consensus       138 dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~  214 (732)
                      ||.|++||+ .+++.                          .....  |...|.+++|+|  +.+|++++.|+.|++||+
T Consensus        78 dg~i~~wd~~~~~~~--------------------------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~  129 (342)
T 1yfq_A           78 QGEILKVDLIGSPSF--------------------------QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDP  129 (342)
T ss_dssp             TSCEEEECSSSSSSE--------------------------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECH
T ss_pred             CCeEEEEEeccCCce--------------------------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcc
Confidence            999999999 76641                          11223  667899999999  579999999999999999


Q ss_pred             CC---------CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          215 RM---------LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       215 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ++         .+.+..+                    . +.. .|.+++|+|++  |++++.|+.|++||+.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~--------------------~-~~~-~v~~~~~~~~~--l~~~~~d~~i~i~d~~~  179 (342)
T 1yfq_A          130 RNYGDGVIAVKNLNSNNT--------------------K-VKN-KIFTMDTNSSR--LIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             HHHTTBCEEEEESCSSSS--------------------S-SCC-CEEEEEECSSE--EEEEESTTEEEEEESSC
T ss_pred             cccccccccccCCeeeEE--------------------e-eCC-ceEEEEecCCc--EEEEeCCCeEEEEECCc
Confidence            86         4433222                    1 223 59999999988  99999999999999887

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=2.2e-30  Score=272.57  Aligned_cols=168  Identities=10%  Similarity=0.058  Sum_probs=127.5

Q ss_pred             CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC
Q 004745           60 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  139 (732)
Q Consensus        60 ~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  139 (732)
                      .+.++|++++|+|+  +++|++|+.|+.|++||+.+...        .++..+.+|...|.+++|+|++ ++|++++.|+
T Consensus         9 ~~~~~v~~~~~s~~--g~~l~~~~~d~~i~iw~~~~~~~--------~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~   77 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQ--RTEFVTTTATNQVELYEQDGNGW--------KHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDR   77 (377)
T ss_dssp             ECSSCCSCCEECSS--SSEEECCCSSSCBCEEEEETTEE--------EECCCBCCCSSCEEEEEECTTT-CCEEEEETTS
T ss_pred             cCCCcEEEEEECCC--CCEEEEecCCCEEEEEEccCCce--------EEEEEEecCCceEEEEEEeCCC-CEEEEEeCCC
Confidence            46779999999998  58999999999999999986421        2357788999999999999954 8999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004745          140 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  219 (732)
Q Consensus       140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~  219 (732)
                      .|++||+.+++..                      ........|...|.+++|+|+ +++|++++.|+.|++||+++.+.
T Consensus        78 ~v~vwd~~~~~~~----------------------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~  134 (377)
T 3dwl_C           78 NAYVYEKRPDGTW----------------------KQTLVLLRLNRAATFVRWSPN-EDKFAVGSGARVISVCYFEQEND  134 (377)
T ss_dssp             SEEEC------CC----------------------CCEEECCCCSSCEEEEECCTT-SSCCEEEESSSCEEECCC-----
T ss_pred             eEEEEEcCCCCce----------------------eeeeEecccCCceEEEEECCC-CCEEEEEecCCeEEEEEECCccc
Confidence            9999999886511                      011223356778999999998 78999999999999999987653


Q ss_pred             CcccccCCCCCCccccccccccccCC-CccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          220 LTSCQKRMSPPPCVNYFCPMHLSEHG-RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ..          +...+       .+ |.. .|++++|+|++++|++++.|+.|++||+..
T Consensus       135 ~~----------~~~~~-------~~~h~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  177 (377)
T 3dwl_C          135 WW----------VSKHL-------KRPLRS-TILSLDWHPNNVLLAAGCADRKAYVLSAYV  177 (377)
T ss_dssp             CC----------CCEEE-------CSSCCS-CEEEEEECTTSSEEEEEESSSCEEEEEECC
T ss_pred             ce----------eeeEe-------ecccCC-CeEEEEEcCCCCEEEEEeCCCEEEEEEEEe
Confidence            11          11111       22 444 699999999999999999999999999976

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=9.7e-30  Score=268.60  Aligned_cols=185  Identities=12%  Similarity=0.056  Sum_probs=126.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEE----EccCCCcCeEEEEEec--------CCCCCEEEEEECCCcE
Q 004745           21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS----IETGHSANVFCTKFVP--------ETSDELVVSGAGDAEV   88 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~----~~~~h~~~V~~~~~s~--------~~~g~~l~s~~~dg~i   88 (732)
                      .+....+++++.+||+|+.|++|+|||+.+++....    .+.+|.+.|++++|+|        +  +++|+||+.|++|
T Consensus        91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d--~~~las~s~D~tv  168 (393)
T 4gq1_A           91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLA--EQVIASVGDDCTL  168 (393)
T ss_dssp             ------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEE--EEEEEEEETTSEE
T ss_pred             CcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCC--CCEEEEEECCCeE
Confidence            333334445667899999999999999998865432    1368999999999998        4  5899999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      +|||+.+.          .++..+.+|...|.+++|+|+++++|++++.|++|++||+++++................+.
T Consensus       169 ~~Wd~~~~----------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s  238 (393)
T 4gq1_A          169 IIWRLTDE----------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT  238 (393)
T ss_dssp             EEEEEETT----------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred             EEEECCCC----------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence            99999753          22566778999999999999777799999999999999999887543222111111111111


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  217 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~  217 (732)
                      .............++...+.++.|++.++..|++++.|+++++||+...
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~  287 (393)
T 4gq1_A          239 LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN  287 (393)
T ss_dssp             EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred             cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence            1111111222334677788999997434889999999999999999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=2.3e-29  Score=248.66  Aligned_cols=98  Identities=15%  Similarity=0.096  Sum_probs=73.3

Q ss_pred             CCCCCCCCCCCCccccccccccceeE-----eeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecC
Q 004745          563 GSPSSSSQNDRIPYQPETVIDMKQRY-----VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGD  637 (732)
Q Consensus       563 ~l~~~~~~~~~~~~~~~~~~~~~~~~-----~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH  637 (732)
                      .+++++.+...++|++.+ .+.++.+     .||....  + ..   +.++.++|+|+.|++|+|||+.+|+++++|.||
T Consensus       252 ~laSGs~D~tIklWd~~t-gk~l~v~~~~~p~Gh~~~~--l-sg---~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH  324 (356)
T 2w18_A          252 SESLRSPVFQLIVINPKT-TLSVGVMLYCLPPGQAGRF--L-EG---DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPV  324 (356)
T ss_dssp             ------CCEEEEEEETTT-TEEEEEEEECCCTTCCCCE--E-EE---EEETTEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred             eeeccCCCcEEEEEECCC-CEEEEEEEeeccCCCccee--E-cc---ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCC
Confidence            357776666677798876 5555554     3776542  2 12   334789999999999999999999999999999


Q ss_pred             cccEE-EEeecCCCCeEEEecCCCcEEEEcC
Q 004745          638 EAVVN-CVQCHPFDCVVATSGIDNTIKIWTP  667 (732)
Q Consensus       638 ~~~V~-~v~fsp~~~~l~S~s~D~~i~vW~~  667 (732)
                      .+.|. +|+|||||++||||+.|++|||||+
T Consensus       325 ~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          325 SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             --CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            88765 6999999999999999999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=7.7e-28  Score=246.48  Aligned_cols=214  Identities=16%  Similarity=0.221  Sum_probs=170.7

Q ss_pred             hccccEeee--ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            8 RLSQERELE--GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         8 ~~~~~~~l~--~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      +.++++.++  +|...|++++|+|++++||+|+.||+|+|||+.+++++..+ .+|...+.++.+.+    ..+++++.+
T Consensus        54 tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~~~----~~l~s~~~~  128 (318)
T 4ggc_A           54 SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNS----YILSSGSRS  128 (318)
T ss_dssp             TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEET----TEEEEEETT
T ss_pred             CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe-cCccceEEEeecCC----CEEEEEecC
Confidence            455666554  67889999999999999999999999999999999999998 79999888876654    689999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      +.+++|+.....         ..+..+.+|...+..+.+.+++ ++|++++.|+.|++||+++++....           
T Consensus       129 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~-----------  187 (318)
T 4ggc_A          129 GHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWV-----------  187 (318)
T ss_dssp             SEEEEEETTSSS---------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSC-----------
T ss_pred             CceEeeecCCCc---------eeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCccccc-----------
Confidence            999999988643         3367788999999999999954 8999999999999999988763210           


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEE--EEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL--VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~--tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                                .......+...|.++.++|++...+.  +++.++.|++||.+........                    
T Consensus       188 ----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--------------------  237 (318)
T 4ggc_A          188 ----------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--------------------  237 (318)
T ss_dssp             ----------CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--------------------
T ss_pred             ----------ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--------------------
Confidence                      11122345568899999998666654  5567899999999876533221                    


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEe--cCCeEEEEECCC
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNH  279 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~--~dg~v~iwd~~~  279 (732)
                       .+.. .+..+.|+|+++.+++++  .|+.|+|||+.+
T Consensus       238 -~~~~-~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~  273 (318)
T 4ggc_A          238 -DAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPT  273 (318)
T ss_dssp             -ECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred             -ccee-eeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence             1222 589999999999888765  689999999876

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=7.4e-28  Score=255.92  Aligned_cols=225  Identities=17%  Similarity=0.218  Sum_probs=168.1

Q ss_pred             ccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCC-CCCEEEEEECCCcEEEEEcC
Q 004745           17 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDAEVRLFNLS   94 (732)
Q Consensus        17 ~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~-~g~~l~s~~~dg~i~vwd~~   94 (732)
                      +|...|++++|+| ++++|++++.|+.|++||+.+++.+..+  .+...+.++.|+|.. ++.++++++.|+.|++||++
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            6999999999999 7789999999999999999999998887  478889999999963 13599999999999999998


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                      ++          .++..+.+|...|.+++|+|++..+|++++.||.|++||+++..........+...         ...
T Consensus       175 ~~----------~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------~~~  235 (408)
T 4a11_B          175 SG----------SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK---------KSQ  235 (408)
T ss_dssp             SS----------CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC---------SCC
T ss_pred             Cc----------ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc---------cce
Confidence            64          23678889999999999999776689999999999999998876332111111000         011


Q ss_pred             ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  254 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  254 (732)
                      ........|...|.+++|+|+ +.+|++++.|+.|++||+++.+...........              . ... .+...
T Consensus       236 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------------~-~~~-~~~~~  298 (408)
T 4a11_B          236 AVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCN--------------N-SKK-GLKFT  298 (408)
T ss_dssp             CTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCC--------------C-CSS-CCCCE
T ss_pred             eeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEEECCCCccceeccccccc--------------c-ccc-cceeE
Confidence            122233567789999999998 889999999999999999987654332111000              0 001 12222


Q ss_pred             EEcCCCCEEEEEecCCeEEEEECCC
Q 004745          255 TFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       255 ~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .....+..+++++.++.|++||+.+
T Consensus       299 ~~~~~~~~~~~~~~~~~i~v~d~~~  323 (408)
T 4a11_B          299 VSCGCSSEFVFVPYGSTIAVYTVYS  323 (408)
T ss_dssp             ECCSSSSCEEEEEETTEEEEEETTT
T ss_pred             EecCCCceEEEEecCCEEEEEECcC
Confidence            2233445677778899999998876

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-29  Score=266.73  Aligned_cols=136  Identities=10%  Similarity=-0.030  Sum_probs=103.2

Q ss_pred             cCCCCccccccCCCCCCCCCCCCCCCCCccccccccc--cceeE-eeeccccceeeecccccCCCCEEEEecCCCcEEEE
Q 004745          547 RRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVID--MKQRY-VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIW  623 (732)
Q Consensus       547 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iW  623 (732)
                      +|...|.+++|||||  |++++.++..++|+..+...  ..+++ .+|...+.++.    |+  |++||+++ |++|++|
T Consensus       180 gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva----Fs--g~~LASa~-~~tIkLW  250 (588)
T 2j04_A          180 GSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK----IV--DYKVVLTC-PGYVHKI  250 (588)
T ss_dssp             TCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE----EE--TTEEEEEC-SSEEEEE
T ss_pred             cccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE----EE--CCEEEEEe-CCeEEEE
Confidence            356778899999999  77777788888899877432  23567 48887765555    57  69999998 6999999


Q ss_pred             EcCcccEEEEEecCcccEEEEee--cCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCchhHHHHHHHHHHHhhhc
Q 004745          624 EKQTGRLIKMLLGDEAVVNCVQC--HPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRN  701 (732)
Q Consensus       624 d~~tg~~~~~l~gH~~~V~~v~f--sp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~~~~~~~~~~~~~~~~~~  701 (732)
                      |+.+++......||.+.|++++|  +|++..|+++++||+ |||....   +. +.    +   +...++.  .++..+.
T Consensus       251 d~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~---~~-~s----p---d~~l~a~--~d~~v~l  316 (588)
T 2j04_A          251 DLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE---LH-VT----A---DNIIAPY--LEKKFKK  316 (588)
T ss_dssp             ETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS---EE-EE----C---CCSSHHH--HHHHHHH
T ss_pred             ECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc---EE-EC----C---CceEEEE--cCCEEEE
Confidence            99998885544499999999999  999999999999999 9999882   22 21    1   1112222  2778888


Q ss_pred             cccc
Q 004745          702 REHS  705 (732)
Q Consensus       702 ~~~~  705 (732)
                      |+..
T Consensus       317 W~~~  320 (588)
T 2j04_A          317 WSTI  320 (588)
T ss_dssp             TTTT
T ss_pred             EECC
Confidence            8874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=9.5e-29  Score=265.29  Aligned_cols=156  Identities=17%  Similarity=0.301  Sum_probs=124.9

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  138 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  138 (732)
                      .+|...|++++|  +  +++|++|+.||.|++||+.+.          +++..+.+|...|.+++|   ++++|++|+.|
T Consensus       130 ~~~~~~v~~~~~--d--~~~l~~g~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~---~~~~l~sg~~d  192 (435)
T 1p22_A          130 SETSKGVYCLQY--D--DQKIVSGLRDNTIKIWDKNTL----------ECKRILTGHTGSVLCLQY---DERVIITGSSD  192 (435)
T ss_dssp             CSSCCCEEEEEC--C--SSEEEEEESSSCEEEEESSSC----------CEEEEECCCSSCEEEEEC---CSSEEEEEETT
T ss_pred             cCCCCcEEEEEE--C--CCEEEEEeCCCeEEEEeCCCC----------eEEEEEcCCCCcEEEEEE---CCCEEEEEcCC
Confidence            357778999888  4  489999999999999999864          336788899999999999   34899999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      |.|++||+.+++.                         +.....|...|.+++|++   ..+++|+.||.|++||+++..
T Consensus       193 g~i~vwd~~~~~~-------------------------~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~  244 (435)
T 1p22_A          193 STVRVWDVNTGEM-------------------------LNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPT  244 (435)
T ss_dssp             SCEEEEESSSCCE-------------------------EEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSS
T ss_pred             CeEEEEECCCCcE-------------------------EEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCC
Confidence            9999999988762                         122234667899999974   499999999999999998765


Q ss_pred             CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .....          ..+       .+|.. .|.+++|  ++++|++++.||.|++||+.+
T Consensus       245 ~~~~~----------~~~-------~~~~~-~v~~~~~--~~~~l~s~~~dg~i~vwd~~~  285 (435)
T 1p22_A          245 DITLR----------RVL-------VGHRA-AVNVVDF--DDKYIVSASGDRTIKVWNTST  285 (435)
T ss_dssp             CCEEE----------EEE-------CCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTT
T ss_pred             Cceee----------eEe-------cCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCc
Confidence            43110          001       34544 5999999  788999999999999999877

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.2e-29  Score=256.69  Aligned_cols=197  Identities=13%  Similarity=0.121  Sum_probs=150.5

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCC
Q 004745           27 WNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI  106 (732)
Q Consensus        27 ~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  106 (732)
                      +.+++.+|++|+.||+|++||+.+++.+..+.   ...|.++.|+|.     +++++.|++|++|+...... .......
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~~~~-~~~~~~~  114 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA-----IISRGPCNRLLLLYPGNQIT-ILDSKTN  114 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS-----EEEECSTTEEEEEETTTEEE-EEETTTC
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc-----eEEecCCCeEEEEEccCceE-EeecCCc
Confidence            34578899999999999999999999988883   567888888885     99999999999998763100 0000001


Q ss_pred             CCceee-ccccCceeEEEEec--CCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC
Q 004745          107 TPSALY-QCHTRRVKKLAVEV--GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ  183 (732)
Q Consensus       107 ~~~~~~-~~h~~~v~~l~~~p--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (732)
                      ..+..+ .+|...|.+++|+|  ++ ++|++++.||.|++||+++++..            .+            ....+
T Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~------------~~------------~~~~~  169 (343)
T 3lrv_A          115 KVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQY------------IV------------HSAKS  169 (343)
T ss_dssp             CEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEE------------EE------------ECCCS
T ss_pred             ceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEE------------EE------------EecCC
Confidence            112222 35678999999999  66 89999999999999999887621            00            01123


Q ss_pred             ccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCC-cccccCCCCCCccccccccccccCC-CccccEEEEEEcCCCC
Q 004745          184 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL-TSCQKRMSPPPCVNYFCPMHLSEHG-RSSLHLTHVTFSPNGE  261 (732)
Q Consensus       184 ~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~sp~g~  261 (732)
                      ...+.+++|+|+ +.+|++|+.||.|++||+++.+.+ ..+                    .+ |.. +|++++|+|+|.
T Consensus       170 ~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~~~~~~~--------------------~~~h~~-~v~~l~fs~~g~  227 (343)
T 3lrv_A          170 DVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPDQASSRF--------------------PVDEEA-KIKEVKFADNGY  227 (343)
T ss_dssp             SCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTTSCCEEC--------------------CCCTTS-CEEEEEECTTSS
T ss_pred             CCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCCCCccEE--------------------eccCCC-CEEEEEEeCCCC
Confidence            346899999998 889999999999999999987654 222                    33 444 699999999999


Q ss_pred             EEEEEecCCeEEEEECCCC
Q 004745          262 EVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       262 ~l~~~~~dg~v~iwd~~~~  280 (732)
                      +|++++ ++.|++||+++.
T Consensus       228 ~l~s~~-~~~v~iwd~~~~  245 (343)
T 3lrv_A          228 WMVVEC-DQTVVCFDLRKD  245 (343)
T ss_dssp             EEEEEE-SSBEEEEETTSS
T ss_pred             EEEEEe-CCeEEEEEcCCC
Confidence            999999 559999999873

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.8e-27  Score=255.38  Aligned_cols=208  Identities=12%  Similarity=0.063  Sum_probs=160.3

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc----cCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~----~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      +.+..+..+ ..+.+++|+|++.++++++.|+.|++||+.+++.+..+.    .+|...|.+++|+|+  +.++++++.|
T Consensus       114 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d  190 (433)
T 3bws_A          114 RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH--NELWVSQMQA  190 (433)
T ss_dssp             EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG--TEEEEEEGGG
T ss_pred             eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC--CEEEEEECCC
Confidence            444555544 456699999988888888889999999999998886431    478889999999998  5899999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      +.|++||+++.          ..+..+..|...+.+++|+|++..++++++.|+.|++||+++++..             
T Consensus       191 ~~v~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~-------------  247 (433)
T 3bws_A          191 NAVHVFDLKTL----------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI-------------  247 (433)
T ss_dssp             TEEEEEETTTC----------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-------------
T ss_pred             CEEEEEECCCc----------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE-------------
Confidence            99999999863          2356777889999999999977555567778999999999876521             


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe--------CCCeEEEEECCCCCCCcccccCCCCCCcccccc
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  237 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~--------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  237 (732)
                       ..           .. ....+.+++|+|+ +++|++++        .|+.|++||+++++.+..+              
T Consensus       248 -~~-----------~~-~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--------------  299 (433)
T 3bws_A          248 -RK-----------TD-KIGLPRGLLLSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--------------  299 (433)
T ss_dssp             -EE-----------CC-CCSEEEEEEECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--------------
T ss_pred             -EE-----------ec-CCCCceEEEEcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--------------
Confidence             10           11 1225899999999 67888877        5889999999876433221              


Q ss_pred             ccccccCCCccccEEEEEEcCCCCEE-EEEecCCeEEEEECCC
Q 004745          238 PMHLSEHGRSSLHLTHVTFSPNGEEV-LLSYSGEHVYLMDVNH  279 (732)
Q Consensus       238 ~~~~~~~~~~~~~i~~l~~sp~g~~l-~~~~~dg~v~iwd~~~  279 (732)
                             .+.. .+.+++|+|+++.+ ++++.++.|++||+.+
T Consensus       300 -------~~~~-~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~  334 (433)
T 3bws_A          300 -------GPPG-NKRHIVSGNTENKIYVSDMCCSKIEVYDLKE  334 (433)
T ss_dssp             -------EEEE-CEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred             -------cCCC-CcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence                   1222 48899999999866 5557899999999987

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-28  Score=282.40  Aligned_cols=169  Identities=13%  Similarity=0.134  Sum_probs=135.2

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASE  137 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~  137 (732)
                      .+|.+.|++++|+|+  +++|++|+.||.|+|||+.....        ..+..+.+|...|++++|+|+. +++|++|+.
T Consensus         6 ~gH~~~V~~l~~s~d--g~~latg~~dg~I~vwd~~~~~~--------~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~   75 (753)
T 3jro_A            6 NAHNELIHDAVLDYY--GKRLATCSSDKTIKIFEVEGETH--------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   75 (753)
T ss_dssp             --CCCCEEEECCCSS--SCCEEEEETTTEEEEEEEETTEE--------EEEEEECCCSSCEEEEEECCTTSCSEEEEEET
T ss_pred             ccCcceeEEEEECCC--CCeEEEEECCCcEEEEecCCCCC--------ccceeccCCcCceEEEEecCCCCCCEEEEEeC
Confidence            799999999999999  58999999999999999984332        3367888999999999999852 589999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCC
Q 004745          138 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRM  216 (732)
Q Consensus       138 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~  216 (732)
                      ||.|++||+.+++.                       ..+.....|...|.+++|+|+. +.++++|+.||.|++||+++
T Consensus        76 Dg~I~vwd~~~~~~-----------------------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~  132 (753)
T 3jro_A           76 DGKVLIWKEENGRW-----------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE  132 (753)
T ss_dssp             TSCEEEEEEETTEE-----------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred             CCeEEEEECCCCcc-----------------------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence            99999999987531                       0122234567799999999974 67999999999999999987


Q ss_pred             CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-------------CCCEEEEEecCCeEEEEECCC
Q 004745          217 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-------------NGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-------------~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .......           .+       .+|.. .|++++|+|             ++++|++|+.||.|++||+.+
T Consensus       133 ~~~~~~~-----------~~-------~~~~~-~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~  189 (753)
T 3jro_A          133 NGTTSPI-----------II-------DAHAI-GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS  189 (753)
T ss_dssp             SSCCCCE-----------EE-------ECCSS-CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEET
T ss_pred             CCCccee-----------Ee-------ecCCC-ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccC
Confidence            6432111           00       33444 599999999             589999999999999999876

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-28  Score=282.13  Aligned_cols=268  Identities=13%  Similarity=0.150  Sum_probs=210.2

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~--~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      +..+.+|.++|++++|+|+|++|++|+.||+|+|||+.  +++.+..+ .+|.+.|++++|+|+.++++|++|+.||.|+
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            46789999999999999999999999999999999998  55677777 7999999999999874358999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      +||+.++..        ..+..+.+|...|++++|+|++ ++++++++.||.|++||++++....               
T Consensus        81 vwd~~~~~~--------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~---------------  137 (753)
T 3jro_A           81 IWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS---------------  137 (753)
T ss_dssp             EEEEETTEE--------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC---------------
T ss_pred             EEECCCCcc--------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc---------------
Confidence            999986421        2367788899999999999962 5899999999999999998874220               


Q ss_pred             ccCCccccccCCCCCccceEEEEecCC------------CCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISST------------RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  236 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~------------~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  236 (732)
                              ......|...|.++.|+|.            ++.+|++|+.||.|++||+++.......         ...+
T Consensus       138 --------~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~---------~~~~  200 (753)
T 3jro_A          138 --------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL---------ESTL  200 (753)
T ss_dssp             --------CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEE---------EEEE
T ss_pred             --------eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccccee---------eeee
Confidence                    1112345668999999994            3789999999999999999876432111         1111


Q ss_pred             cccccccCCCccccEEEEEEcCC---CCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCc
Q 004745          237 CPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHD  313 (732)
Q Consensus       237 ~~~~~~~~~~~~~~i~~l~~sp~---g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (732)
                             .+|.. +|++++|+|+   +++|++++.||.|++||+.++......           .......+...+.+++
T Consensus       201 -------~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~-----------~~~~~~~~~~~v~~l~  261 (753)
T 3jro_A          201 -------EGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK-----------TLLKEEKFPDVLWRAS  261 (753)
T ss_dssp             -------CCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBC-----------CBSSSSCCSSCCCCEE
T ss_pred             -------cCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCccee-----------EEeccCCCCCceEEEE
Confidence                   34555 6999999999   899999999999999999985421110           1113345677889999


Q ss_pred             cCCCccccccccccCcchhhHHHHHHHhhhhcCC
Q 004745          314 FLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGK  347 (732)
Q Consensus       314 ~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~  347 (732)
                      |+|+|..++   +++.|+.+++     |++..+.
T Consensus       262 ~spdg~~l~---s~s~Dg~I~v-----wd~~~~~  287 (753)
T 3jro_A          262 WSLSGNVLA---LSGGDNKVTL-----WKENLEG  287 (753)
T ss_dssp             ECTTTCCEE---EECSSSCEEC-----CBCCSSS
T ss_pred             EcCCCCEEE---EEcCCCEEEE-----EecCCCC
Confidence            999999999   9999999999     9887544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=5.5e-27  Score=247.90  Aligned_cols=184  Identities=16%  Similarity=0.174  Sum_probs=140.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-EEEECCCcEEEEEcCCCCCCCCCCCCCCCce
Q 004745           32 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  110 (732)
Q Consensus        32 ~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  110 (732)
                      .++++++.|+.|++||+.+++.+..+ ..|. .+.+++|+|++  ++| ++++.|+.|++||+.+++          .+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-~~~~-~~~~~~~s~dg--~~l~~~~~~d~~i~v~d~~~~~----------~~~   68 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATI-PVGS-NPMGAVISPDG--TKVYVANAHSNDVSIIDTATNN----------VIA   68 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEE-ECSS-SEEEEEECTTS--SEEEEEEGGGTEEEEEETTTTE----------EEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEe-ecCC-CcceEEECCCC--CEEEEECCCCCeEEEEECCCCe----------EEE
Confidence            46888999999999999999999888 4554 58999999994  665 677789999999998642          245


Q ss_pred             eeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEE
Q 004745          111 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  190 (732)
Q Consensus       111 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  190 (732)
                      .+..+ ..+.+++|+|++..++++++.++.|++||+.+++..              ..+.            +...+.++
T Consensus        69 ~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~--------------~~~~------------~~~~~~~~  121 (391)
T 1l0q_A           69 TVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA--------------GTVK------------TGKSPLGL  121 (391)
T ss_dssp             EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--------------EEEE------------CSSSEEEE
T ss_pred             EEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEE--------------EEEe------------CCCCcceE
Confidence            55544 489999999977445566777899999999876521              1000            12257899


Q ss_pred             EecCCCCCEE-EEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEE-EEEec
Q 004745          191 DISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV-LLSYS  268 (732)
Q Consensus       191 ~~~~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l-~~~~~  268 (732)
                      +|+|+ ++.| ++++.++.|++||+.+++.+..+                    ..+.  .+.+++|+|++++| ++++.
T Consensus       122 ~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~--~~~~~~~~~dg~~l~~~~~~  178 (391)
T 1l0q_A          122 ALSPD-GKKLYVTNNGDKTVSVINTVTKAVINTV--------------------SVGR--SPKGIAVTPDGTKVYVANFD  178 (391)
T ss_dssp             EECTT-SSEEEEEETTTTEEEEEETTTTEEEEEE--------------------ECCS--SEEEEEECTTSSEEEEEETT
T ss_pred             EECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEE--------------------ecCC--CcceEEECCCCCEEEEEeCC
Confidence            99999 5655 78888999999999877544332                    1122  37899999999988 56677


Q ss_pred             CCeEEEEECCC
Q 004745          269 GEHVYLMDVNH  279 (732)
Q Consensus       269 dg~v~iwd~~~  279 (732)
                      ++.|++||+.+
T Consensus       179 ~~~v~~~d~~~  189 (391)
T 1l0q_A          179 SMSISVIDTVT  189 (391)
T ss_dssp             TTEEEEEETTT
T ss_pred             CCEEEEEECCC
Confidence            89999999877

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=2.4e-27  Score=247.99  Aligned_cols=173  Identities=14%  Similarity=0.188  Sum_probs=136.5

Q ss_pred             EeCCCCeeEEEEccCCCcCeEEEEEecCC-CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEE
Q 004745           46 WSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV  124 (732)
Q Consensus        46 Wd~~~~~~~~~~~~~h~~~V~~~~~s~~~-~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  124 (732)
                      |+....+.+..+ .+|.+.|++++|+|+. +|++|++|+.||.|++||+.+...        .....+.+|...|++++|
T Consensus        24 ~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~--------~~~~~~~~h~~~v~~~~~   94 (368)
T 3mmy_A           24 DNHNPMKDIEVT-SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ--------TIPKAQQMHTGPVLDVCW   94 (368)
T ss_dssp             CSSCTTCCEECS-SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--------EEEEEEEECSSCEEEEEE
T ss_pred             CCCCCcceeEec-cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--------eeEEEeccccCCEEEEEE
Confidence            445556666666 7999999999999982 128999999999999999986321        123678889999999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEe--cCCCCCEEEE
Q 004745          125 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPHLLLV  202 (732)
Q Consensus       125 ~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~t  202 (732)
                      +| ++++|++++.||.|++||+.+++..                          ....|...|.+++|  +|+ +.+|++
T Consensus        95 ~~-~~~~l~s~~~dg~v~iwd~~~~~~~--------------------------~~~~~~~~v~~~~~~~~~~-~~~l~~  146 (368)
T 3mmy_A           95 SD-DGSKVFTASCDKTAKMWDLSSNQAI--------------------------QIAQHDAPVKTIHWIKAPN-YSCVMT  146 (368)
T ss_dssp             CT-TSSEEEEEETTSEEEEEETTTTEEE--------------------------EEEECSSCEEEEEEEECSS-CEEEEE
T ss_pred             Cc-CCCEEEEEcCCCcEEEEEcCCCCce--------------------------eeccccCceEEEEEEeCCC-CCEEEE
Confidence            99 4589999999999999999876521                          01235668999999  887 789999


Q ss_pred             EeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          203 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       203 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ++.|+.|++||+++.+.+..+                    ..+.  .+.++.+.+  ..+++++.++.+++|++..
T Consensus       147 ~~~dg~i~vwd~~~~~~~~~~--------------------~~~~--~~~~~~~~~--~~~~~~~~~~~i~~~~~~~  199 (368)
T 3mmy_A          147 GSWDKTLKFWDTRSSNPMMVL--------------------QLPE--RCYCADVIY--PMAVVATAERGLIVYQLEN  199 (368)
T ss_dssp             EETTSEEEEECSSCSSCSEEE--------------------ECSS--CEEEEEEET--TEEEEEEGGGCEEEEECSS
T ss_pred             ccCCCcEEEEECCCCcEEEEE--------------------ecCC--CceEEEecC--CeeEEEeCCCcEEEEEecc
Confidence            999999999999987665443                    1222  366666654  4789999999999999977

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=4.5e-27  Score=244.44  Aligned_cols=83  Identities=19%  Similarity=0.229  Sum_probs=77.1

Q ss_pred             ceeEeeeccccceeeecccccCCCCEEEEecCCCc-EEEEEcCcccEEEEEe-c-CcccEEEEeecCCCCeEEEecCCCc
Q 004745          585 KQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGR-WFIWEKQTGRLIKMLL-G-DEAVVNCVQCHPFDCVVATSGIDNT  661 (732)
Q Consensus       585 ~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~-i~iWd~~tg~~~~~l~-g-H~~~V~~v~fsp~~~~l~S~s~D~~  661 (732)
                      ++.+.+|...++++.    |+|||++||||+.|++ |+|||+.+++++.++. | |...|++++|+|++++|+++|.|++
T Consensus       188 ~~~~~~h~~~v~~~~----~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~  263 (355)
T 3vu4_A          188 GVLIKAHTNPIKMVR----LNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT  263 (355)
T ss_dssp             CEEECCCSSCEEEEE----ECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred             cEEEEccCCceEEEE----ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence            677889999977666    6999999999999999 9999999999999999 6 9999999999999999999999999


Q ss_pred             EEEEcCCCCC
Q 004745          662 IKIWTPSASV  671 (732)
Q Consensus       662 i~vW~~~~~~  671 (732)
                      |+|||+....
T Consensus       264 v~iw~~~~~~  273 (355)
T 3vu4_A          264 LHVFEIFNDQ  273 (355)
T ss_dssp             EEEEESSCCS
T ss_pred             EEEEEccCCC
Confidence            9999998664

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=2e-27  Score=252.26  Aligned_cols=257  Identities=16%  Similarity=0.197  Sum_probs=197.9

Q ss_pred             cccEeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-------eeEEEEccCCCcCeEEEEEecCCCCCEEEE
Q 004745           10 SQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSDELVVS   81 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~-------~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s   81 (732)
                      +.+..+.+|.++|++++|+| ++++|++|+.||+|+|||+.++       +.+..+ .+|...|.+++|+|++ ..+|++
T Consensus        72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~-~~~l~s  149 (402)
T 2aq5_A           72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTA-QNVLLS  149 (402)
T ss_dssp             TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSB-TTEEEE
T ss_pred             CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCC-CCEEEE
Confidence            34567889999999999999 9999999999999999999987       556777 7999999999999994 269999


Q ss_pred             EECCCcEEEEEcCCCCCCCCCCCCCCCceee--ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004745           82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH  159 (732)
Q Consensus        82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  159 (732)
                      ++.|+.|++||+.++          .++..+  .+|...|.+++|+|+ +++|++++.||.|++||+++++..       
T Consensus       150 ~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~-------  211 (402)
T 2aq5_A          150 AGCDNVILVWDVGTG----------AAVLTLGPDVHPDTIYSVDWSRD-GALICTSCRDKRVRVIEPRKGTVV-------  211 (402)
T ss_dssp             EETTSCEEEEETTTT----------EEEEEECTTTCCSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEE-------
T ss_pred             EcCCCEEEEEECCCC----------CccEEEecCCCCCceEEEEECCC-CCEEEEEecCCcEEEEeCCCCcee-------
Confidence            999999999999864          235667  789999999999995 489999999999999999886521       


Q ss_pred             cccceEEeeccCCccccccCCCCCcc-ceEEEEecCCCCCEEEEE---eCCCeEEEEECCCCCCCcccccCCCCCCcccc
Q 004745          160 QECRNILLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVG---GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  235 (732)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~tg---~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  235 (732)
                             ..+          ...|.. .+.++.|+|+ +.+|++|   +.|+.|++||+++.+.....            
T Consensus       212 -------~~~----------~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~------------  261 (402)
T 2aq5_A          212 -------AEK----------DRPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEEPLSL------------  261 (402)
T ss_dssp             -------EEE----------ECSSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBCSSCSEE------------
T ss_pred             -------eee----------ccCCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCccccCCceE------------
Confidence                   100          012222 4788999998 7889998   78999999999876531110            


Q ss_pred             ccccccccCCCccccEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCCC-cceeeecCCCCceeeeccCCCCccCCCCCCc
Q 004745          236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNHAGG-RAMRYTVGDASKIMSFTPTLNGLELQPPIHD  313 (732)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~-~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (732)
                      .      ...+.. .+.+++|+|++++|+++ +.||.|++||+.+++. ...+..             . .+...+.+++
T Consensus       262 ~------~~~~~~-~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~-------------~-~~~~~v~~~~  320 (402)
T 2aq5_A          262 Q------ELDTSS-GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM-------------F-SSKESQRGMG  320 (402)
T ss_dssp             E------ECCCCS-SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE-------------E-CCSSCCSEEE
T ss_pred             E------eccCCC-ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc-------------c-ccCCcccceE
Confidence            0      011222 58999999999999755 4699999999998553 111111             1 1345778888


Q ss_pred             cCCCccccccccccCcchhhHHHHHHHhhhhcCC
Q 004745          314 FLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGK  347 (732)
Q Consensus       314 ~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~  347 (732)
                      |+|++..++   +  .++.+++     |.+..+.
T Consensus       321 ~sp~~~~~~---s--~~~~~~~-----~~l~~~~  344 (402)
T 2aq5_A          321 YMPKRGLEV---N--KCEIARF-----YKLHERK  344 (402)
T ss_dssp             ECCGGGSCG---G--GTEEEEE-----EEEETTE
T ss_pred             Eecccccce---e--cceeEEE-----EEcCCCc
Confidence            899988887   3  4557777     8877554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.95  E-value=1.4e-27  Score=244.10  Aligned_cols=222  Identities=15%  Similarity=0.178  Sum_probs=174.5

Q ss_pred             ccEeeeccCCceeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745           11 QERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus        11 ~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      .+..|++|.++|++++|+|  ++++||+|+.|++|+|||+.+++  .+..+ .+|...|.+++|+|+..+.+|++|+.|+
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~  127 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDG  127 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSS
T ss_pred             EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCC
Confidence            4678999999999999986  48999999999999999998874  55566 7899999999999984458999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC----------------CcEEEEEeCCCcEEEEECCCCC
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN----------------PHVVWSASEDGTLRQHDFRQGS  150 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~----------------~~~l~s~s~dg~i~vwd~~~~~  150 (732)
                      +|++||++.....       .....+.+|...|.+++|+|+.                +.+|++++.|+.|++||++...
T Consensus       128 ~i~lwd~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~  200 (316)
T 3bg1_A          128 AISLLTYTGEGQW-------EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG  200 (316)
T ss_dssp             CEEEEEECSSSCE-------EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS
T ss_pred             CEEEEecCCCCCc-------ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC
Confidence            9999999853210       1134567899999999999963                3689999999999999986542


Q ss_pred             CCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC---CCEEEEEeCCCeEEEEECCCCCCCcccccCC
Q 004745          151 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---PHLLLVGGSDAFARLYDRRMLPPLTSCQKRM  227 (732)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~  227 (732)
                      .                      ...+....+|...|.+++|+|++   +.+|++|+.|++|++||+++......     
T Consensus       201 ~----------------------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~-----  253 (316)
T 3bg1_A          201 Q----------------------WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTW-----  253 (316)
T ss_dssp             C----------------------EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCC-----
T ss_pred             c----------------------cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccch-----
Confidence            1                      01122345677899999999983   37999999999999999976321000     


Q ss_pred             CCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          228 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                          ....+       .+|.. .|++++|+|++++|++++.|+.|++|+...
T Consensus       254 ----~~~~~-------~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          254 ----SPKLL-------HKFND-VVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             ----BCCEE-------EECSS-CEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             ----hhhhh-------hcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence                00000       22333 699999999999999999999999999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.95  E-value=2.5e-27  Score=247.18  Aligned_cols=206  Identities=13%  Similarity=0.119  Sum_probs=162.5

Q ss_pred             cCCceeEEEEcCCCCEEEEE--eCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004745           18 HQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR   95 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg--~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~   95 (732)
                      +...+.+++|||||++||++  +.|++|+|||+.+++++..+  .|...|.+++|+|+  |++|++++.+ .+++|+..+
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~--~~~~~V~~v~fspd--g~~l~s~s~~-~~~~~~~~~  206 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI--ETRGEVKDLHFSTD--GKVVAYITGS-SLEVISTVT  206 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE--ECSSCCCEEEECTT--SSEEEEECSS-CEEEEETTT
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe--CCCCceEEEEEccC--CceEEeccce-eEEEEEecc
Confidence            45568999999999998755  47899999999999999888  47788999999999  5899998855 566666664


Q ss_pred             CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC----cEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      +...        ......+|...|.+++|+|++ .++++++.|+    .+++|++......             .     
T Consensus       207 ~~~~--------~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~-------------~-----  259 (365)
T 4h5i_A          207 GSCI--------ARKTDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTS-------------V-----  259 (365)
T ss_dssp             CCEE--------EEECCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEE-------------E-----
T ss_pred             Ccce--------eeeecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceec-------------c-----
Confidence            3221        123456788999999999955 8888888877    5788887665310             0     


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  251 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (732)
                         .......+|...|++++|+|+ +++||+|+.|++|+|||+++++.+..+.                   .+|.. +|
T Consensus       260 ---~~~~~~~~~~~~V~~~~~Spd-g~~lasgs~D~~V~iwd~~~~~~~~~~~-------------------~gH~~-~V  315 (365)
T 4h5i_A          260 ---LRSKQVTNRFKGITSMDVDMK-GELAVLASNDNSIALVKLKDLSMSKIFK-------------------QAHSF-AI  315 (365)
T ss_dssp             ---EEEEEEESSCSCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEET-------------------TSSSS-CE
T ss_pred             ---eeeeeecCCCCCeEeEEECCC-CCceEEEcCCCEEEEEECCCCcEEEEec-------------------CcccC-CE
Confidence               011122345668999999999 8899999999999999999876554321                   55666 69


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          252 THVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       252 ~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ++++|+|||++|++++.|++|+||++..
T Consensus       316 ~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          316 TEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9999999999999999999999999965

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=2.1e-27  Score=254.10  Aligned_cols=273  Identities=15%  Similarity=0.216  Sum_probs=207.3

Q ss_pred             EeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCC----------CeeEEEEccCCCcCeEEEEEecCCCCCEEEE
Q 004745           13 RELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS----------RKLLHSIETGHSANVFCTKFVPETSDELVVS   81 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~----------~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s   81 (732)
                      ..+.+|.+.|++++|+|+ +.+||+++.||.|+|||+.+          .+.+..+ .+|...|++++|+|++ ..+|++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~-~~~l~s  199 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNL-NGYLLS  199 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTS-TTEEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCC-CCeEEE
Confidence            445689999999999997 68999999999999999986          5667777 7999999999999985 239999


Q ss_pred             EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004745           82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      |+.||.|++|++.......   ....+...+.+|...|.+++|+|+++.+|++++.||.|++||+++.....        
T Consensus       200 ~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~--------  268 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEH---RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK--------  268 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGG---GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS--------
T ss_pred             EeCCCeEEEEeCCCCCCCC---ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc--------
Confidence            9999999999998632210   00122456778999999999999777999999999999999999764110        


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMH  240 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~  240 (732)
                                    .+.....|...|.+++|+|++..+|++|+.||.|++||+++.. ++..+                 
T Consensus       269 --------------~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~-----------------  317 (430)
T 2xyi_A          269 --------------PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF-----------------  317 (430)
T ss_dssp             --------------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-----------------
T ss_pred             --------------ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe-----------------
Confidence                          1111124566899999999966689999999999999999743 22222                 


Q ss_pred             cccCCCccccEEEEEEcCCCC-EEEEEecCCeEEEEECCCCCCcceeee-cCCCCceeeeccCCCCccCCCCCCccCCCc
Q 004745          241 LSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTLNGLELQPPIHDFLQTN  318 (732)
Q Consensus       241 ~~~~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  318 (732)
                         .+|.. .|++++|+|+++ +|++++.||.|+|||+........... ...+...+   ....+|...+..++|+|++
T Consensus       318 ---~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~p~~  390 (430)
T 2xyi_A          318 ---ESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL---FIHGGHTAKISDFSWNPNE  390 (430)
T ss_dssp             ---ECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEE---EECCCCSSCEEEEEECSSS
T ss_pred             ---ecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceE---EEcCCCCCCceEEEECCCC
Confidence               33444 699999999995 689999999999999987432211000 00001111   1234667778889999999


Q ss_pred             c-ccccccccCcchhhHHHHHHHhhhh
Q 004745          319 I-RVRGEVATGLGKCRMLVEIARNSLE  344 (732)
Q Consensus       319 ~-~~~~~~~~~~d~~~~l~~~~~~~~~  344 (732)
                      . .++   +++.|+.+++     |.+.
T Consensus       391 ~~~l~---s~s~dg~i~i-----w~~~  409 (430)
T 2xyi_A          391 PWIIC---SVSEDNIMQV-----WQMA  409 (430)
T ss_dssp             TTEEE---EEETTSEEEE-----EEEC
T ss_pred             CCEEE---EEECCCCEEE-----eEcc
Confidence            8 777   9999999999     7765

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=8.7e-27  Score=251.09  Aligned_cols=290  Identities=12%  Similarity=0.131  Sum_probs=195.8

Q ss_pred             cccEeeeccC------------CceeEEEEcCCC--CEEEEEeCCCcEEEEeCCCCeeE---------------------
Q 004745           10 SQERELEGHQ------------GCVNAISWNSKG--SLLISGSDDTHINVWSYSSRKLL---------------------   54 (732)
Q Consensus        10 ~~~~~l~~h~------------~~V~~l~~s~dg--~~lasg~~dg~i~vWd~~~~~~~---------------------   54 (732)
                      ++...+.+|.            .+|++++|+|++  .+|++++.|++|++||+.+++..                     
T Consensus        72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  151 (447)
T 3dw8_B           72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT  151 (447)
T ss_dssp             EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCS
T ss_pred             eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccc
Confidence            3577899998            899999999998  79999999999999998765432                     


Q ss_pred             ------------------EEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce------
Q 004745           55 ------------------HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA------  110 (732)
Q Consensus        55 ------------------~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------  110 (732)
                                        ..+..+|...|.+++|+|+  +++|++| .|+.|++||++....         .+.      
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~---------~~~~~~~~~  219 (447)
T 3dw8_B          152 LRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD--YETYLSA-DDLRINLWHLEITDR---------SFNIVDIKP  219 (447)
T ss_dssp             CCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT--SSEEEEE-CSSEEEEEETTEEEE---------EEEEEECCC
T ss_pred             eEeccccchheeeeccceEEeccCCCcceEEEEEcCC--CCEEEEe-CCCeEEEEECCCCCc---------eeeeeeccc
Confidence                              2333689999999999998  5899998 799999999984211         112      


Q ss_pred             -eeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEE
Q 004745          111 -LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  189 (732)
Q Consensus       111 -~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  189 (732)
                       .+.+|...|++++|+|+++++|++++.||.|++||+++++.....        ...+...... ........|...|.+
T Consensus       220 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~v~~  290 (447)
T 3dw8_B          220 ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH--------SKLFEEPEDP-SNRSFFSEIISSISD  290 (447)
T ss_dssp             SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT--------CEEECCC------CCHHHHHTTCEEE
T ss_pred             ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce--------eeEeccCCCc-cccccccccCceEEE
Confidence             466899999999999976689999999999999999987642100        0000000000 000000112238999


Q ss_pred             EEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec
Q 004745          190 CDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  268 (732)
Q Consensus       190 i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~  268 (732)
                      ++|+|+ +.+|++++. +.|++||+++ .+.+..+.........+...     . ....-..+..++|+|++++|++++.
T Consensus       291 ~~~s~~-g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~-----~-~~~~i~~~~~~~~s~~~~~l~s~s~  362 (447)
T 3dw8_B          291 VKFSHS-GRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL-----Y-ENDCIFDKFECCWNGSDSVVMTGSY  362 (447)
T ss_dssp             EEECTT-SSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH-----H-HTSGGGCCCCEEECTTSSEEEEECS
T ss_pred             EEECCC-CCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc-----c-cccccccceEEEECCCCCEEEEecc
Confidence            999998 889999998 9999999987 65554442110000000000     0 0000001345999999999999999


Q ss_pred             CCeEEEEECCCCCCcceeeecCCCCceeeec-----------------cCCCCccCCCCCCccCCCccccccccccCcch
Q 004745          269 GEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-----------------PTLNGLELQPPIHDFLQTNIRVRGEVATGLGK  331 (732)
Q Consensus       269 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~  331 (732)
                      ||.|++||+.+++... +..+....+.....                 ...-.+...+..++|+|+|..++   .++.++
T Consensus       363 dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la---~~~~~~  438 (447)
T 3dw8_B          363 NNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIA---VATTNN  438 (447)
T ss_dssp             TTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEE---EECSSC
T ss_pred             CCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEE---EEecce
Confidence            9999999999865432 22222111110000                 01113345678899999999999   776665


Q ss_pred             h
Q 004745          332 C  332 (732)
Q Consensus       332 ~  332 (732)
                      .
T Consensus       439 ~  439 (447)
T 3dw8_B          439 L  439 (447)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=5.1e-28  Score=287.79  Aligned_cols=469  Identities=10%  Similarity=-0.003  Sum_probs=297.7

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCeeEEEEccCCCcCe-------EEEEEecCCCC
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANV-------FCTKFVPETSD   76 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d------g~i~vWd~~~~~~~~~~~~~h~~~V-------~~~~~s~~~~g   76 (732)
                      ...+.|.+|...|.+++|||||++||.++.+      ..|++||+.+++ ...+ ..|...+       .+++|+|++  
T Consensus        43 g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~l-t~~~~~~~~~~~~~~~~~~SpDg--  118 (1045)
T 1k32_A           43 GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRI-TYFSGKSTGRRMFTDVAGFDPDG--  118 (1045)
T ss_dssp             CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEEC-CCCCEEEETTEECSEEEEECTTC--
T ss_pred             CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEc-ccCCCcccccccccccccCCCCC--
Confidence            3467788999999999999999999988643      479999998887 4555 6888888       999999994  


Q ss_pred             CEEEEEECC------CcEEEEEcCCCCCCCCCCCC---------------------------------------CCCcee
Q 004745           77 ELVVSGAGD------AEVRLFNLSRFSGRGLDDNA---------------------------------------ITPSAL  111 (732)
Q Consensus        77 ~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~---------------------------------------~~~~~~  111 (732)
                      +++++++.+      ..|.+|++..+....+....                                       ......
T Consensus       119 ~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~  198 (1045)
T 1k32_A          119 NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK  198 (1045)
T ss_dssp             CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE
T ss_pred             EEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEE
Confidence            777777754      35777777643211110000                                       001123


Q ss_pred             eccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEE
Q 004745          112 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD  191 (732)
Q Consensus       112 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  191 (732)
                      +.+|...+.++.|+++  .++++++.|+.+++|.+......                     ...+.   .+. .+...+
T Consensus       199 l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~---------------------~~~l~---~~~-~~~~~~  251 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKD---------------------LRKHT---SFT-DYYPRH  251 (1045)
T ss_dssp             EECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCS---------------------CEECC---CCC-SSCEEE
T ss_pred             CcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCc---------------------ceEec---CCC-Ccceee
Confidence            4567888899999884  67778888899999986542110                     00111   111 345668


Q ss_pred             ecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc-CCCCEEEEEecCC
Q 004745          192 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGE  270 (732)
Q Consensus       192 ~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-p~g~~l~~~~~dg  270 (732)
                      |+|+ ++.|+.+ .++.|++||+... .+..+.......         ......+.. .+.+++|+ |+|++|+.++ ++
T Consensus       252 ~SpD-G~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~---------~~~~~~~~~-~v~~~~~S~pdG~~la~~~-~~  317 (1045)
T 1k32_A          252 LNTD-GRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLES---------PEDRIISIP-SKFAEDFSPLDGDLIAFVS-RG  317 (1045)
T ss_dssp             EEES-SSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCB---------CCSEEEECG-GGGEEEEEECGGGCEEEEE-TT
T ss_pred             EcCC-CCEEEEE-eCCEEEEecCCce-EeeeeccCcccc---------ccccccccc-ccceeeecCCCCCEEEEEE-cC
Confidence            9999 6777777 4899999998432 222221100000         000001122 48899999 9999888887 88


Q ss_pred             eEEEEECCCCCCcceeeecCCCCceeeeccCCCCccC-CCCCCccCCCccccccccccCcchhhH-HHHHHHhhhhcCCC
Q 004745          271 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL-QPPIHDFLQTNIRVRGEVATGLGKCRM-LVEIARNSLEEGKH  348 (732)
Q Consensus       271 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~d~~~~-l~~~~~~~~~~~~~  348 (732)
                      .|++|++.++....                 ...+.. .+..++|+ ||+.++   .++.+..+. +     |++..+..
T Consensus       318 ~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~s-dg~~l~---~~s~~~~l~~~-----~d~~~~~~  371 (1045)
T 1k32_A          318 QAFIQDVSGTYVLK-----------------VPEPLRIRYVRRGGD-TKVAFI---HGTREGDFLGI-----YDYRTGKA  371 (1045)
T ss_dssp             EEEEECTTSSBEEE-----------------CSCCSCEEEEEECSS-SEEEEE---EEETTEEEEEE-----EETTTCCE
T ss_pred             EEEEEcCCCCceEE-----------------ccCCCcceEEeeeEc-CCCeEE---EEECCCceEEE-----EECCCCCc
Confidence            99999988743111                 111222 34567788 888887   444443333 3     34433321


Q ss_pred             chhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHH
Q 004745          349 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE  428 (732)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (732)
                      .         .+.++...                                                              
T Consensus       372 ~---------~l~~~~~~--------------------------------------------------------------  380 (1045)
T 1k32_A          372 E---------KFEENLGN--------------------------------------------------------------  380 (1045)
T ss_dssp             E---------ECCCCCCS--------------------------------------------------------------
T ss_pred             e---------EecCCccc--------------------------------------------------------------
Confidence            0         00011000                                                              


Q ss_pred             HHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccccccccc--CCCCCCCCCCCC
Q 004745          429 ALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSE  506 (732)
Q Consensus       429 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~  506 (732)
                           +...+|+|+           ++.|+.++.++.+++|+.      .+|++..+..  .|...  .++|||||    
T Consensus       381 -----~~~~~~SpD-----------G~~la~~~~~~~v~~~d~------~tg~~~~~~~--~~~~~v~~~~~SpDG----  432 (1045)
T 1k32_A          381 -----VFAMGVDRN-----------GKFAVVANDRFEIMTVDL------ETGKPTVIER--SREAMITDFTISDNS----  432 (1045)
T ss_dssp             -----EEEEEECTT-----------SSEEEEEETTSEEEEEET------TTCCEEEEEE--CSSSCCCCEEECTTS----
T ss_pred             -----eeeeEECCC-----------CCEEEEECCCCeEEEEEC------CCCceEEecc--CCCCCccceEECCCC----
Confidence                 223456666           455566666677777763      3444433221  23332  78899999    


Q ss_pred             CCCCChhhhhhhcccCCCCCCCC----------cccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 004745          507 REDSDYDEEVEVDFHTSVPGDEG----------RDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPY  576 (732)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~s~~~d----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~  576 (732)
                                    +.++++..+          ..+++|++.+.....+..+...+..++|+|||++|++++.......|
T Consensus       433 --------------~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~  498 (1045)
T 1k32_A          433 --------------RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP  498 (1045)
T ss_dssp             --------------CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred             --------------CeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCc
Confidence                          766665443          48999998765577788888888999999999999887644333333


Q ss_pred             c------------------------------------------cccccccceeEeeeccccceeeecccccCCCCEEEE-
Q 004745          577 Q------------------------------------------PETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIAS-  613 (732)
Q Consensus       577 ~------------------------------------------~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~las-  613 (732)
                      .                                          ..+....+..+.+|...+.   .+. ++|||+++++ 
T Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~---~~~-~s~dg~~~~~~  574 (1045)
T 1k32_A          499 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR---MII-PLESSILIYSV  574 (1045)
T ss_dssp             CSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE---EEE-ECSSEEEEEEC
T ss_pred             chhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChh---heE-EcCCCeEEEEe
Confidence            2                                          1111112334445555533   344 5999998886 


Q ss_pred             ------------ecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCC
Q 004745          614 ------------GSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASV  671 (732)
Q Consensus       614 ------------gs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~  671 (732)
                                  ...+.+|.+||+.+++.. .|.   ..|.+++|||||++|++++.| .|++||+.+++
T Consensus       575 ~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          575 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             CCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             cccCcccccccccCCCceEEEEECCCCcEE-Eee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence                        223567899999998853 444   668999999999999999876 79999999887

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=3.5e-26  Score=250.16  Aligned_cols=205  Identities=12%  Similarity=0.109  Sum_probs=149.4

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc--CCCCCCCCCC
Q 004745           26 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL--SRFSGRGLDD  103 (732)
Q Consensus        26 ~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~--~~~~~~~~~~  103 (732)
                      +|+|++.++++++.|++|.+||..+++++.++..++.  +.+++|+|+  |++|++++.|++|.+||+  .+.       
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spd--g~~l~v~~~d~~V~v~D~~~~t~-------  212 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSAS--GRYLLVIGRDARIDMIDLWAKEP-------  212 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTT--SCEEEEEETTSEEEEEETTSSSC-------
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCC--CCEEEEECCCCeEEEEECcCCCC-------
Confidence            4889999999999999999999999999999843554  889999999  599999999999999999  542       


Q ss_pred             CCCCCceeeccccCceeEEEEec----CCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004745          104 NAITPSALYQCHTRRVKKLAVEV----GNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  178 (732)
Q Consensus       104 ~~~~~~~~~~~h~~~v~~l~~~p----~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (732)
                         .++..+. +...+..++|+|    ++ +++++++ .+++|.+||..+.+..           . .+.....   ...
T Consensus       213 ---~~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~-----------~-~i~~~g~---~~~  272 (543)
T 1nir_A          213 ---TKVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPK-----------Q-IVSTRGM---TVD  272 (543)
T ss_dssp             ---EEEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEE-----------E-EEECCEE---CSS
T ss_pred             ---cEEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccc-----------e-eecccCc---ccC
Confidence               2245555 456789999999    77 6666666 5899999999877632           1 1110000   000


Q ss_pred             CCCCC-ccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004745          179 DPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  257 (732)
Q Consensus       179 ~~~~~-~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  257 (732)
                      ....| ...+.++.++|+++.++++...++.|.+||..+.+.+...           .        ..+ ...+..++|+
T Consensus       273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~-----------~--------i~~-~~~~~~~~~s  332 (543)
T 1nir_A          273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT-----------S--------IGA-APFLHDGGWD  332 (543)
T ss_dssp             SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE-----------E--------EEC-CSSCCCEEEC
T ss_pred             ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE-----------E--------ecc-CcCccCceEC
Confidence            00001 1268899999987777888888999999999876433210           0        001 1136779999


Q ss_pred             CCCCEEEEEe-cCCeEEEEECCCCC
Q 004745          258 PNGEEVLLSY-SGEHVYLMDVNHAG  281 (732)
Q Consensus       258 p~g~~l~~~~-~dg~v~iwd~~~~~  281 (732)
                      |+|++|++++ .+++|.+||+.+++
T Consensus       333 pdg~~l~va~~~~~~v~v~D~~tg~  357 (543)
T 1nir_A          333 SSHRYFMTAANNSNKVAVIDSKDRR  357 (543)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             CCCCEEEEEecCCCeEEEEECCCCe
Confidence            9999877665 48999999999854

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=6.1e-25  Score=232.16  Aligned_cols=208  Identities=7%  Similarity=0.085  Sum_probs=157.9

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEE-EEEC
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAG   84 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~l-asg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~-s~~~   84 (732)
                      .+.++++.+.+|. .+.+++|+|+|++| ++++.|++|++||+.+++.+..+ ..+. .+.+++|+|++  ++|+ +++.
T Consensus        20 ~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~-~~~~-~v~~~~~spdg--~~l~~~~~~   94 (391)
T 1l0q_A           20 TSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-PAGS-SPQGVAVSPDG--KQVYVTNMA   94 (391)
T ss_dssp             TTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-ECSS-SEEEEEECTTS--SEEEEEETT
T ss_pred             CCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE-ECCC-CccceEECCCC--CEEEEEECC
Confidence            3456677777665 58999999999976 67778999999999999999888 3343 89999999994  7664 5556


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      ++.|++||+.++.          .+..+. +...+.+++|+|++..++++++.++.|++||+.+++..            
T Consensus        95 ~~~v~v~d~~~~~----------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~------------  151 (391)
T 1l0q_A           95 SSTLSVIDTTSNT----------VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI------------  151 (391)
T ss_dssp             TTEEEEEETTTTE----------EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE------------
T ss_pred             CCEEEEEECCCCe----------EEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE------------
Confidence            7999999998642          234444 34578999999976445578888999999999876521            


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEE-EEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                        ..+.           . ...+.+++|+|+ ++.| ++++.++.|++||+++.+.+..+                    
T Consensus       152 --~~~~-----------~-~~~~~~~~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~--------------------  196 (391)
T 1l0q_A          152 --NTVS-----------V-GRSPKGIAVTPD-GTKVYVANFDSMSISVIDTVTNSVIDTV--------------------  196 (391)
T ss_dssp             --EEEE-----------C-CSSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEE--------------------
T ss_pred             --EEEe-----------c-CCCcceEEECCC-CCEEEEEeCCCCEEEEEECCCCeEEEEE--------------------
Confidence              1110           1 125689999999 5555 67788999999999876543222                    


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEe---cCCeEEEEECCC
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSY---SGEHVYLMDVNH  279 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~---~dg~v~iwd~~~  279 (732)
                      . +.. .+.+++|+|++++|++++   .++.|++||+.+
T Consensus       197 ~-~~~-~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~  233 (391)
T 1l0q_A          197 K-VEA-APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (391)
T ss_dssp             E-CSS-EEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             e-cCC-CccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence            1 112 488999999999999988   689999999877

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.5e-26  Score=244.83  Aligned_cols=174  Identities=13%  Similarity=0.044  Sum_probs=120.8

Q ss_pred             CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC---CCCC-C-CCC-------------------------------
Q 004745           62 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS---GRGL-D-DNA-------------------------------  105 (732)
Q Consensus        62 ~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~---~~~~-~-~~~-------------------------------  105 (732)
                      ..++.+++|+|+  |++|+++ .++.|++||+.++.   .... . ...                               
T Consensus         4 ~~p~~~v~~s~d--g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (450)
T 2vdu_B            4 IHPLQNLLTSRD--GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK   80 (450)
T ss_dssp             ECCCCEEEECSS--SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred             cccEEEEEecCC--CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence            357899999999  4766655 57899999998754   1000 0 000                               


Q ss_pred             -----------CCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC--CCCCCCCCCCCCcccceEEeeccCC
Q 004745          106 -----------ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus       106 -----------~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                                 ..+.....+|...|++++|+|++..++++++.||.|++||+.  +++..           ..+.     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-----------~~~~-----  144 (450)
T 2vdu_B           81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL-----------KLRK-----  144 (450)
T ss_dssp             -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE-----------EEEE-----
T ss_pred             CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee-----------eeee-----
Confidence                       000111234666899999999663335899999999999998  54421           1110     


Q ss_pred             ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004745          173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  252 (732)
Q Consensus       173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (732)
                             ...+...|.+++|+|+ +.+|++|+.+|.|++|++.+.+....         +...+       .+|.. .|+
T Consensus       145 -------~~~~~~~v~~~~~sp~-~~~l~~~~~~g~v~~~~~~~~~~~~~---------~~~~~-------~~h~~-~v~  199 (450)
T 2vdu_B          145 -------RFCFSKRPNAISIAED-DTTVIIADKFGDVYSIDINSIPEEKF---------TQEPI-------LGHVS-MLT  199 (450)
T ss_dssp             -------EEECSSCEEEEEECTT-SSEEEEEETTSEEEEEETTSCCCSSC---------CCCCS-------EECSS-CEE
T ss_pred             -------cccCCCCceEEEEcCC-CCEEEEEeCCCcEEEEecCCcccccc---------cceee-------ecccC-ceE
Confidence                   0123457999999999 78999999999999999987654320         00111       34544 699


Q ss_pred             EEEEcCC---CCEEEEEecCCeEEEEECCC
Q 004745          253 HVTFSPN---GEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       253 ~l~~sp~---g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +++|+|+   +++|++++.|+.|++||+.+
T Consensus       200 ~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~  229 (450)
T 2vdu_B          200 DVHLIKDSDGHQFIITSDRDEHIKISHYPQ  229 (450)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred             EEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence            9999999   99999999999999999876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=2.9e-26  Score=272.73  Aligned_cols=429  Identities=9%  Similarity=0.018  Sum_probs=286.2

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC------CcEEEE
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLF   91 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d------g~i~vw   91 (732)
                      +...+...+|||  +.||.++. +.|++|++.+++.. .+ ..|...+.+++|||+  |++|+.++.+      ..|++|
T Consensus        13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~-~l-t~~~~~v~~~~~SPD--G~~la~~s~~~~~~~~~~i~~~   85 (1045)
T 1k32_A           13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR-KI-VSNLGVINNARFFPD--GRKIAIRVMRGSSLNTADLYFY   85 (1045)
T ss_dssp             CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE-EE-ECSSSEEEEEEECTT--SSEEEEEEEESTTCCEEEEEEE
T ss_pred             ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE-Ee-eeCCCcccCeEECCC--CCEEEEEEeeccCCCCCeEEEE
Confidence            567889999995  57887775 68999999887654 44 589999999999999  5889887643      379999


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCce-------eEEEEecCCCcEEEEEeCC------CcEEEEECCCCCCCCCCCCC
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRV-------KKLAVEVGNPHVVWSASED------GTLRQHDFRQGSSCPPAGSS  158 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~  158 (732)
                      ++..+.           ...+..|...+       ..++|+|++ +++++++.+      ..|.+|++..++........
T Consensus        86 d~~~g~-----------~~~lt~~~~~~~~~~~~~~~~~~SpDg-~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~  153 (1045)
T 1k32_A           86 NGENGE-----------IKRITYFSGKSTGRRMFTDVAGFDPDG-NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP  153 (1045)
T ss_dssp             ETTTTE-----------EEECCCCCEEEETTEECSEEEEECTTC-CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS
T ss_pred             ECCCCC-----------eEEcccCCCcccccccccccccCCCCC-EEEEEECCcCCCcccceEEEEECCCCCeEEecCCC
Confidence            987532           45677788777       899999977 577777754      35888888665422111000


Q ss_pred             Cc--------------------------ccceEEee-ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEE
Q 004745          159 HQ--------------------------ECRNILLD-LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  211 (732)
Q Consensus       159 ~~--------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~i  211 (732)
                      ..                          .....+|. ...+....   ..+|...+.++.|+++  .++++++.|+.++|
T Consensus       154 ~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~---l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l  228 (1045)
T 1k32_A          154 ATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK---IVDMSTHVSSPVIVGH--RIYFITDIDGFGQI  228 (1045)
T ss_dssp             CSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE---EECCSSCCEEEEEETT--EEEEEECTTSSCEE
T ss_pred             cceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEE---CcCCCCcccceEEeCC--EEEEEEeccCceEE
Confidence            00                          00011111 11111111   2467778899999986  47778888899999


Q ss_pred             EECCC-CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecC
Q 004745          212 YDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG  290 (732)
Q Consensus       212 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  290 (732)
                      |.+.. +.....+                    ..+.  .+..++|+|+|++|+.+ .++.|++|++.. .....+.. .
T Consensus       229 ~~~~~~g~~~~~l--------------------~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~-~~l~~l~~-~  283 (1045)
T 1k32_A          229 YSTDLDGKDLRKH--------------------TSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDT-EKIEKIEI-G  283 (1045)
T ss_dssp             EEEETTSCSCEEC--------------------CCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTT-CCEEECCC-C
T ss_pred             EEEeCCCCcceEe--------------------cCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCc-eEeeeecc-C
Confidence            98753 2111111                    1122  25567999999988887 589999999943 22211111 0


Q ss_pred             CCCceeeeccCCCCccCCCCCCccC-CCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCC
Q 004745          291 DASKIMSFTPTLNGLELQPPIHDFL-QTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP  369 (732)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  369 (732)
                      ....    .+....+...+..++|+ |||+.++   .++ ++.+.+     |+...+.                      
T Consensus       284 ~~~~----~~~~~~~~~~v~~~~~S~pdG~~la---~~~-~~~i~~-----~~~~~~~----------------------  328 (1045)
T 1k32_A          284 DLES----PEDRIISIPSKFAEDFSPLDGDLIA---FVS-RGQAFI-----QDVSGTY----------------------  328 (1045)
T ss_dssp             CCCB----CCSEEEECGGGGEEEEEECGGGCEE---EEE-TTEEEE-----ECTTSSB----------------------
T ss_pred             cccc----cccccccccccceeeecCCCCCEEE---EEE-cCEEEE-----EcCCCCc----------------------
Confidence            0000    01111233456778899 9999887   332 222222     2221111                      


Q ss_pred             ccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHH
Q 004745          370 MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK  449 (732)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  449 (732)
                                                                                                      
T Consensus       329 --------------------------------------------------------------------------------  328 (1045)
T 1k32_A          329 --------------------------------------------------------------------------------  328 (1045)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccc---cCCCCCCCCCCCCCCCCChhhhhhhcccCCCCC
Q 004745          450 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSE---ANSDASQDGPRSEREDSDYDEEVEVDFHTSVPG  526 (732)
Q Consensus       450 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~  526 (732)
                                                      ...   +..+..   ....|+ ||                  +.++..
T Consensus       329 --------------------------------~~~---~~~~~~~~~~~~~~s-dg------------------~~l~~~  354 (1045)
T 1k32_A          329 --------------------------------VLK---VPEPLRIRYVRRGGD-TK------------------VAFIHG  354 (1045)
T ss_dssp             --------------------------------EEE---CSCCSCEEEEEECSS-SE------------------EEEEEE
T ss_pred             --------------------------------eEE---ccCCCcceEEeeeEc-CC------------------CeEEEE
Confidence                                            000   000111   134555 55                  555555


Q ss_pred             CCCcccc-cccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeeccccc
Q 004745          527 DEGRDVE-ANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLG  605 (732)
Q Consensus       527 ~~d~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s  605 (732)
                      +.+..+. +|++.+.....+..+...+..++|||||++||+++.+++..+|+..+ .+....+.+|...+..+.    ||
T Consensus       355 s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~~~~~~~~~v~~~~----~S  429 (1045)
T 1k32_A          355 TREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERSREAMITDFT----IS  429 (1045)
T ss_dssp             ETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCCEE----EC
T ss_pred             ECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC-CceEEeccCCCCCccceE----EC
Confidence            5555566 66776665556667778899999999999999987666666788876 566667778888766555    69


Q ss_pred             CCCCEEEEecCCC----------cEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCC
Q 004745          606 QRGDYIASGSDDG----------RWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS  670 (732)
Q Consensus       606 ~dg~~lasgs~Dg----------~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~  670 (732)
                      |||++||+++.++          .|++||+.+++ +..+.+|...+.+++|+|||++|++++.++..++|+....
T Consensus       430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~  503 (1045)
T 1k32_A          430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  503 (1045)
T ss_dssp             TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             CCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence            9999999987754          99999999988 7889999999999999999999999999999999987643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.5e-26  Score=236.93  Aligned_cols=152  Identities=6%  Similarity=-0.054  Sum_probs=114.1

Q ss_pred             CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004745           76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  155 (732)
Q Consensus        76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  155 (732)
                      +.+|++|+.||+|++||+.++.          .+..+.  ...|.++.|+|.    +++++.|+.|++|+....      
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~~----------~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~------  105 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDSK----------TITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQ------  105 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSSS----------CEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTE------
T ss_pred             CCEEEEECCCCcEEEEECCCCc----------EEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCc------
Confidence            4799999999999999998642          244444  466888888884    889999999999998652      


Q ss_pred             CCCCcccceEEeeccCCccccccCCCCCccceEEEEecC--CCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcc
Q 004745          156 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  233 (732)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  233 (732)
                              ..++++.++..... ....|...|.+++|+|  + +.+|++++.||.|++||+++++.+...          
T Consensus       106 --------~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~----------  165 (343)
T 3lrv_A          106 --------ITILDSKTNKVLRE-IEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQYIVH----------  165 (343)
T ss_dssp             --------EEEEETTTCCEEEE-EECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEE----------
T ss_pred             --------eEEeecCCcceeEE-eecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEEEEE----------
Confidence                    23344443331111 1123456899999999  8 789999999999999999987543221          


Q ss_pred             ccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          234 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       234 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                                ..+....|++++|+|+|++|++|+.||.|++||+++
T Consensus       166 ----------~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~  201 (343)
T 3lrv_A          166 ----------SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS  201 (343)
T ss_dssp             ----------CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred             ----------ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence                      122233599999999999999999999999999987

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=3.8e-25  Score=229.26  Aligned_cols=249  Identities=14%  Similarity=0.157  Sum_probs=178.2

Q ss_pred             cccEeeeccCCceeEEEEcC--CCCEEEEEeCCCcEEEEeCCCC---------eeEEEEccCCCcCeEEEEEecCCCCCE
Q 004745           10 SQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSR---------KLLHSIETGHSANVFCTKFVPETSDEL   78 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~~---------~~~~~~~~~h~~~V~~~~~s~~~~g~~   78 (732)
                      +....+.+|..+|++++|+|  ++++|++|+.||.|++||+.++         +.+..+ ..|...|.+++|+|+..+.+
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~  126 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLK  126 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSE
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcE
Confidence            46677889999999999999  6999999999999999999887         556667 78999999999999822389


Q ss_pred             EEEEECCCcEEEEEcCCCCCCCCCCC---CCCCceeeccccCceeEEEEecC--CCcEEEEEeCCCcEEEEECCCCCCCC
Q 004745           79 VVSGAGDAEVRLFNLSRFSGRGLDDN---AITPSALYQCHTRRVKKLAVEVG--NPHVVWSASEDGTLRQHDFRQGSSCP  153 (732)
Q Consensus        79 l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~~p~--~~~~l~s~s~dg~i~vwd~~~~~~~~  153 (732)
                      |++++.|+.|++||+++.........   ..........|...+.+++|+|+  ++.++++++.|+.+.+|+...++.  
T Consensus       127 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~--  204 (351)
T 3f3f_A          127 LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL--  204 (351)
T ss_dssp             EEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE--
T ss_pred             EEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce--
Confidence            99999999999999987532210000   00000112267889999999996  368999999999998888766541  


Q ss_pred             CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCC---CEEEEEeCCCeEEEEECCCCCCCcccccCCCCC
Q 004745          154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  230 (732)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~---~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~  230 (732)
                                           ..+.....|...|++++|+|+++   .+|++|+.||.|++||++...............
T Consensus       205 ---------------------~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  263 (351)
T 3f3f_A          205 ---------------------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNS  263 (351)
T ss_dssp             ---------------------EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------
T ss_pred             ---------------------eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccce
Confidence                                 11233445777999999999942   799999999999999998753221111000000


Q ss_pred             Cc----------------------cc---ccc-ccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCc
Q 004745          231 PC----------------------VN---YFC-PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  283 (732)
Q Consensus       231 ~~----------------------~~---~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~  283 (732)
                      ..                      ..   ... .......+|.. .|++++|+|++++|++++.||.|++|++.+++..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          264 NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG-EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             ---------------------------CCSEEEEEEEEECTTSS-CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             eccCCCcccccccccccccccceeeeecccccccEEEEEecccc-cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence            00                      00   000 00000134555 6999999999999999999999999999986543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=4.9e-25  Score=217.81  Aligned_cols=202  Identities=12%  Similarity=0.064  Sum_probs=143.1

Q ss_pred             ceeEEEEcCC----CCEEEEEeC--------------------CCcEEEEeC-CCCeeEEEEccCCCcCeEEEEEec-CC
Q 004745           21 CVNAISWNSK----GSLLISGSD--------------------DTHINVWSY-SSRKLLHSIETGHSANVFCTKFVP-ET   74 (732)
Q Consensus        21 ~V~~l~~s~d----g~~lasg~~--------------------dg~i~vWd~-~~~~~~~~~~~~h~~~V~~~~~s~-~~   74 (732)
                      .|++++|+||    ++++++++.                    |+.|++|++ .+++.+..+ .+|...+..++|+| ++
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g  191 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQG  191 (356)
T ss_dssp             EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEET
T ss_pred             ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCC
Confidence            5667777778    777777653                    888888888 447777766 57888888888888 33


Q ss_pred             CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecccc---CceeEEEEecCCCcEE------------EEEeCCC
Q 004745           75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT---RRVKKLAVEVGNPHVV------------WSASEDG  139 (732)
Q Consensus        75 ~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~~l------------~s~s~dg  139 (732)
                      ++.+|++++.|++|+|||+++++          +++++.+|.   ..+.+++|+|++ .++            ++|+.|+
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk----------~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~  260 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQ----------LLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVF  260 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCC----------EEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCE
T ss_pred             CCceEEEecCCCcEEEEECCCCc----------EEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCc
Confidence            36899999999999999999753          367777643   467788999955 654            6788999


Q ss_pred             cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004745          140 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  219 (732)
Q Consensus       140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~  219 (732)
                      +|++||..+++..           ..+         .+..+.+|...+.+..++   +.++++|+.|++|+|||+.+++.
T Consensus       261 tIklWd~~tgk~l-----------~v~---------~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~  317 (356)
T 2w18_A          261 QLIVINPKTTLSV-----------GVM---------LYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQC  317 (356)
T ss_dssp             EEEEEETTTTEEE-----------EEE---------EECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSE
T ss_pred             EEEEEECCCCEEE-----------EEE---------EeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcE
Confidence            9999999877522           000         011122343344444444   56899999999999999999876


Q ss_pred             CcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 004745          220 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  277 (732)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~  277 (732)
                      +.++                    .+|....+..++|+|+|++|++|+.|++|+|||+
T Consensus       318 l~tL--------------------~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          318 TALL--------------------PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEE--------------------CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEe--------------------cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            5554                    5565544556999999999999999999999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=1.1e-23  Score=225.73  Aligned_cols=204  Identities=9%  Similarity=0.105  Sum_probs=144.6

Q ss_pred             cCCceeEEE---EcCCCCEEEEEe--------------CCC--cEEEEeCCCC--eeEEEEccCCCcCeEEEEEecCCCC
Q 004745           18 HQGCVNAIS---WNSKGSLLISGS--------------DDT--HINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSD   76 (732)
Q Consensus        18 h~~~V~~l~---~s~dg~~lasg~--------------~dg--~i~vWd~~~~--~~~~~~~~~h~~~V~~~~~s~~~~g   76 (732)
                      ....+..++   |+|+++.++..+              .++  .|.+||..++  +.+..+ ..+ ..+.+++|+|+  +
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~-~~~~~~~~s~~--~  134 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRF-KTG-FQPKSVRFIDN--T  134 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEE-ECS-SCBCCCEESSS--S
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEE-cCC-CCceEEEEeCC--C
Confidence            456778888   899887665432              223  4444455434  555555 333 45669999995  5


Q ss_pred             CEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004745           77 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  156 (732)
Q Consensus        77 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  156 (732)
                      .++++++.++.|++||+.++....     ......+.+|...|.+++|+| ++.++++++.|+.|++||+.+++..    
T Consensus       135 ~~~~~~~~~~~i~~~d~~~g~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~----  204 (433)
T 3bws_A          135 RLAIPLLEDEGMDVLDINSGQTVR-----LSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYK----  204 (433)
T ss_dssp             EEEEEBTTSSSEEEEETTTCCEEE-----ECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEE----
T ss_pred             eEEEEeCCCCeEEEEECCCCeEee-----ecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEE----
Confidence            788888889999999998643211     011114568889999999988 4589999999999999999876521    


Q ss_pred             CCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEE-EEEeCCCeEEEEECCCCCCCcccccCCCCCCcccc
Q 004745          157 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  235 (732)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  235 (732)
                                           .....+...+.+++|+|+ +..+ ++++.|+.|++||+++++.+..+            
T Consensus       205 ---------------------~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~~~~~~~------------  250 (433)
T 3bws_A          205 ---------------------ATVDLTGKWSKILLYDPI-RDLVYCSNWISEDISVIDRKTKLEIRKT------------  250 (433)
T ss_dssp             ---------------------EEEECSSSSEEEEEEETT-TTEEEEEETTTTEEEEEETTTTEEEEEC------------
T ss_pred             ---------------------EEEcCCCCCeeEEEEcCC-CCEEEEEecCCCcEEEEECCCCcEEEEe------------
Confidence                                 111134457899999999 5555 56668999999999876543322            


Q ss_pred             ccccccccCCCccccEEEEEEcCCCCEEEEEe--------cCCeEEEEECCC
Q 004745          236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--------SGEHVYLMDVNH  279 (732)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~--------~dg~v~iwd~~~  279 (732)
                              ..+.  .+.+++|+|+|++|++++        .||.|++||+.+
T Consensus       251 --------~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~  292 (433)
T 3bws_A          251 --------DKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK  292 (433)
T ss_dssp             --------CCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred             --------cCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence                    1122  489999999999999988        477888888876

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.92  E-value=7.3e-25  Score=231.19  Aligned_cols=238  Identities=11%  Similarity=0.129  Sum_probs=156.3

Q ss_pred             cEeeeccCCceeEEEEcC--------CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745           12 ERELEGHQGCVNAISWNS--------KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~--------dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      +..+.||.+.|++++|+|        |+++||||+.|++|+|||+.++..+..+ .+|...|.+++|+|+. +.+|++++
T Consensus       129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p~~-~~~l~~~~  206 (393)
T 4gq1_A          129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG-YPLSSPGISVQFRPSN-PNQLIVGE  206 (393)
T ss_dssp             ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE-EECSSCEEEEEEETTE-EEEEEEEE
T ss_pred             ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee-cCCCCCcEEEEECCCC-CceEEecC
Confidence            445789999999999998        8899999999999999999988887777 5888999999999984 35899999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCC---------------CCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNA---------------ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  148 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~---------------~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  148 (732)
                      .|++|++||++++.........               ........+|...+.++.|.+.++..|++++.|+.+++||+..
T Consensus       207 ~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~  286 (393)
T 4gq1_A          207 RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA  286 (393)
T ss_dssp             TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--
T ss_pred             CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc
Confidence            9999999999875432110000               0011233578889999999855668999999999999999988


Q ss_pred             CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCC
Q 004745          149 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  228 (732)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~  228 (732)
                      ++................+ .     ........+...+..+.+.+.++.++++|+.||.|++||+.+++.+..+     
T Consensus       287 ~~~~~~l~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~-----  355 (393)
T 4gq1_A          287 NNDYNEISDSTMKLGPKNL-L-----PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP-----  355 (393)
T ss_dssp             -----------------CC-S-----CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE-----
T ss_pred             CCCCceEeeecCccccEEE-c-----cccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe-----
Confidence            7643221111000000000 0     0000011112223333333443556777888999999999987654332     


Q ss_pred             CCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          229 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                                     .+|.. +|++++|+|+|++|++++.+| +.+|.+..
T Consensus       356 ---------------~~~~~-~V~svafspdG~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          356 ---------------IQLGM-PIVDFCWHQDGSHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             ---------------EECSS-CEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred             ---------------cCCCC-cEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence                           23434 699999999999999998665 66666543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=5e-24  Score=226.13  Aligned_cols=199  Identities=11%  Similarity=0.082  Sum_probs=144.4

Q ss_pred             CCceeEEEEcCCCC-EEEEEe----CCC----cEEEEeC--CCCeeE--EEEccCCCcCeEEEEEecC--------C---
Q 004745           19 QGCVNAISWNSKGS-LLISGS----DDT----HINVWSY--SSRKLL--HSIETGHSANVFCTKFVPE--------T---   74 (732)
Q Consensus        19 ~~~V~~l~~s~dg~-~lasg~----~dg----~i~vWd~--~~~~~~--~~~~~~h~~~V~~~~~s~~--------~---   74 (732)
                      ...|...+|++.|. ++++|+    .||    +|+|||+  .+++++  ..+ .+|...+..+++++.        +   
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSY-KVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEE-EcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            34778888988875 666876    467    8999999  888877  335 688888888877751        0   


Q ss_pred             -CCCEEEEEECC------CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC---cEEEE
Q 004745           75 -SDELVVSGAGD------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQH  144 (732)
Q Consensus        75 -~g~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg---~i~vw  144 (732)
                       .+..++.++.+      +.|++||+...           ....+.+|...+.+++|+|++ +.|++++.++   .|++|
T Consensus       141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-----------~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~  208 (415)
T 2hqs_A          141 AFRTRIAYVVQTNGGQFPYELRVSDYDGY-----------NQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQ  208 (415)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEEEEETTSC-----------SCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEE
T ss_pred             cCCCEEEEEEecCCCCccceEEEEcCCCC-----------CCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEE
Confidence             02566666554      79999999742           256778899999999999965 7888888775   89999


Q ss_pred             ECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEE-EEeCCCe--EEEEECCCCCCCc
Q 004745          145 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAF--ARLYDRRMLPPLT  221 (732)
Q Consensus       145 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-tg~~dg~--v~iwd~~~~~~~~  221 (732)
                      |+.+++..                       .+   ..+...+.+++|+|+ ++.|+ +++.++.  |++||+.+++.. 
T Consensus       209 d~~tg~~~-----------------------~l---~~~~~~~~~~~~spd-g~~la~~~~~~g~~~i~~~d~~~~~~~-  260 (415)
T 2hqs_A          209 TLANGAVR-----------------------QV---ASFPRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQIR-  260 (415)
T ss_dssp             ETTTCCEE-----------------------EE---ECCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCEE-
T ss_pred             ECCCCcEE-----------------------Ee---ecCCCcccCEEEcCC-CCEEEEEEecCCCceEEEEECCCCCEE-
Confidence            99887521                       11   123347899999999 67666 6666654  999999876431 


Q ss_pred             ccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CC--eEEEEECCC
Q 004745          222 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE--HVYLMDVNH  279 (732)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg--~v~iwd~~~  279 (732)
                      .+                    ..+.. .+.+++|+|+|++|+.++. ++  .|++||+.+
T Consensus       261 ~l--------------------~~~~~-~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          261 QV--------------------TDGRS-NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  300 (415)
T ss_dssp             EC--------------------CCCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             eC--------------------cCCCC-cccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence            11                    22333 5899999999999988886 44  566667665

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=1.1e-23  Score=242.24  Aligned_cols=219  Identities=9%  Similarity=0.011  Sum_probs=149.3

Q ss_pred             CCceeEEEEcCCCCEEEEEeC-CC-----cEEEEeCCCCeeEEEEccCCCc------------------------CeEEE
Q 004745           19 QGCVNAISWNSKGSLLISGSD-DT-----HINVWSYSSRKLLHSIETGHSA------------------------NVFCT   68 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~-dg-----~i~vWd~~~~~~~~~~~~~h~~------------------------~V~~~   68 (732)
                      ...|.+++|||||++|++++. |+     .|++||+.+++....+ ..+..                        .|.++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence            567999999999999999998 88     8999999999877666 34332                        38899


Q ss_pred             EEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004745           69 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  148 (732)
Q Consensus        69 ~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  148 (732)
                      +|+|+  |++|++++. +.|++||+.++...        ....+..|...+..++|+|++ ++|+.++. +.|++||+.+
T Consensus       115 ~~SpD--g~~l~~~~~-~~i~~~d~~~~~~~--------~~~~l~~~~~~~~~~~~SPDG-~~la~~~~-~~i~~~d~~~  181 (741)
T 2ecf_A          115 QWSPD--AQRLLFPLG-GELYLYDLKQEGKA--------AVRQLTHGEGFATDAKLSPKG-GFVSFIRG-RNLWVIDLAS  181 (741)
T ss_dssp             EECTT--SSEEEEEET-TEEEEEESSSCSTT--------SCCBCCCSSSCEEEEEECTTS-SEEEEEET-TEEEEEETTT
T ss_pred             EECCC--CCEEEEEeC-CcEEEEECCCCCcc--------eEEEcccCCcccccccCCCCC-CEEEEEeC-CcEEEEecCC
Confidence            99999  589998886 99999999864100        134566677889999999965 78877774 6899999987


Q ss_pred             CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC---------------------
Q 004745          149 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---------------------  207 (732)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg---------------------  207 (732)
                      ++...........   ...    +....+.  ......+.++.|+|+ +++|++++.|+                     
T Consensus       182 g~~~~~~~~~~~~---~~~----g~~~~v~--~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~  251 (741)
T 2ecf_A          182 GRQMQLTADGSTT---IGN----GIAEFVA--DEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQ  251 (741)
T ss_dssp             TEEEECCCCCCSS---EEE----SCCCHHH--HHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred             CCEEEeccCCccc---eec----cccceee--eeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence            6522100000000   000    0000000  000012467999999 77888887665                     


Q ss_pred             ------------eEEEEECCC-CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-----C
Q 004745          208 ------------FARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----G  269 (732)
Q Consensus       208 ------------~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-----d  269 (732)
                                  .|++||+.+ ++......             .     ..+.. .+..++| |||++|+.++.     +
T Consensus       252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~-------------~-----~~~~~-~~~~~~~-pDg~~l~~~~~~~~~~~  311 (741)
T 2ecf_A          252 RYPAAGDANVQVKLGVISPAEQAQTQWIDL-------------G-----KEQDI-YLARVNW-RDPQHLSFQRQSRDQKK  311 (741)
T ss_dssp             ECCBTTSCCCEEEEEEECSSTTCCCEEECC-------------C-----SCSSE-EEEEEEE-EETTEEEEEEEETTSSE
T ss_pred             ecCCCCCCCCeeEEEEEECCCCCceEEecC-------------C-----CCcce-EEEEEEe-CCCCEEEEEEecccCCe
Confidence                        788899887 64321110             0     11323 5899999 99999988764     5


Q ss_pred             CeEEEEECCCCC
Q 004745          270 EHVYLMDVNHAG  281 (732)
Q Consensus       270 g~v~iwd~~~~~  281 (732)
                      ..|++||+.+++
T Consensus       312 ~~i~~~d~~~g~  323 (741)
T 2ecf_A          312 LDLVEVTLASNQ  323 (741)
T ss_dssp             EEEEEEETTTCC
T ss_pred             EEEEEEECCCCc
Confidence            679999988743

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=7.8e-22  Score=215.67  Aligned_cols=215  Identities=11%  Similarity=0.148  Sum_probs=154.3

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeC--CCCeeEEEEccCCCcCeEEEEEec----CCCCCEEE
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY--SSRKLLHSIETGHSANVFCTKFVP----ETSDELVV   80 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~--~~~~~~~~~~~~h~~~V~~~~~s~----~~~g~~l~   80 (732)
                      .+.+++.++..+.. +..++|+|||++|++++.|++|++||+  .+++++.++ . +...+..++|+|    +  |++++
T Consensus       167 ~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i-~-~g~~p~~va~sp~~~~d--g~~l~  241 (543)
T 1nir_A          167 DSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-K-IGIEARSVESSKFKGYE--DRYTI  241 (543)
T ss_dssp             TTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-E-CCSEEEEEEECCSTTCT--TTEEE
T ss_pred             CCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-e-cCCCcceEEeCCCcCCC--CCEEE
Confidence            35567777873333 889999999999999999999999999  889998888 3 455689999999    8  58888


Q ss_pred             EEEC-CCcEEEEEcCCCCCCCCCCCCCCCceeecc----------ccC-ceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004745           81 SGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HTR-RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  148 (732)
Q Consensus        81 s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----------h~~-~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  148 (732)
                      +++. +++|.+||..+.+          ++..+..          |.. .+.++.++|+++.++++...++.|.+||+.+
T Consensus       242 v~~~~~~~v~v~D~~t~~----------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~  311 (543)
T 1nir_A          242 AGAYWPPQFAIMDGETLE----------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD  311 (543)
T ss_dssp             EEEEESSEEEEEETTTCC----------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred             EEEccCCeEEEEeccccc----------cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence            8874 8999999988642          2344332          333 7889999998888888999999999999987


Q ss_pred             CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEE-EEeCCCeEEEEECCCCCCCcccccCC
Q 004745          149 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRM  227 (732)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~  227 (732)
                      .+.+            .+..+.            +...+.++.|+|+ +++|+ ++..+++|.+||+.+++.+..+... 
T Consensus       312 ~~~l------------~~~~i~------------~~~~~~~~~~spd-g~~l~va~~~~~~v~v~D~~tg~l~~~i~~g-  365 (543)
T 1nir_A          312 IDNL------------TVTSIG------------AAPFLHDGGWDSS-HRYFMTAANNSNKVAVIDSKDRRLSALVDVG-  365 (543)
T ss_dssp             SSSC------------EEEEEE------------CCSSCCCEEECTT-SCEEEEEEGGGTEEEEEETTTTEEEEEEECS-
T ss_pred             CCcc------------eeEEec------------cCcCccCceECCC-CCEEEEEecCCCeEEEEECCCCeEEEeeccC-
Confidence            6522            000000            1224667899999 66555 4556899999999988654433210 


Q ss_pred             CCCCccccccccccccCCCccccEEEEEEcCC-CCEEEEEe-cCCeEEEEECCC
Q 004745          228 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSY-SGEHVYLMDVNH  279 (732)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~-g~~l~~~~-~dg~v~iwd~~~  279 (732)
                                     ...|.+. ...+ ++|+ +..++++. .|++|.+||+.+
T Consensus       366 ---------------~~ph~g~-g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          366 ---------------KTPHPGR-GANF-VHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             ---------------SSBCCTT-CEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             ---------------CCCCCCC-Cccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence                           0113221 2223 5787 55556654 589999999987

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=6.6e-22  Score=209.75  Aligned_cols=203  Identities=9%  Similarity=0.055  Sum_probs=150.4

Q ss_pred             EeeeccCCceeEEEEcC--------------CCCEEEEEeCC------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEec
Q 004745           13 RELEGHQGCVNAISWNS--------------KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKFVP   72 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~--------------dg~~lasg~~d------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~   72 (732)
                      ..+.+|...+..+++++              .+..++.++.+      +.|++||+.. .....+ .+|...|.+++|+|
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l-~~~~~~v~~~~~Sp  188 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVV-HRSPQPLMSPAWSP  188 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEE-EEESSCEEEEEECT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEE-eCCCCcceeeEEcC
Confidence            55888888888888775              25667666654      7999999874 445566 57999999999999


Q ss_pred             CCCCCEEEEEECCC---cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc--EEEEECC
Q 004745           73 ETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFR  147 (732)
Q Consensus        73 ~~~g~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~--i~vwd~~  147 (732)
                      +  |++|++++.++   .|++||+.++.           ...+..|...+.+++|+|++..++++++.++.  |++||+.
T Consensus       189 d--g~~la~~s~~~~~~~i~~~d~~tg~-----------~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~  255 (415)
T 2hqs_A          189 D--GSKLAYVTFESGRSALVIQTLANGA-----------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  255 (415)
T ss_dssp             T--SSEEEEEECTTSSCEEEEEETTTCC-----------EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             C--CCEEEEEEecCCCcEEEEEECCCCc-----------EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC
Confidence            9  58999999875   99999998643           34566788899999999976334447777665  9999998


Q ss_pred             CCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC-CC--eEEEEECCCCCCCcccc
Q 004745          148 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DA--FARLYDRRMLPPLTSCQ  224 (732)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-dg--~v~iwd~~~~~~~~~~~  224 (732)
                      +++..                          ....+...+.+++|+|+ +++|++++. ++  .|++||+.+++.. .+ 
T Consensus       256 ~~~~~--------------------------~l~~~~~~~~~~~~spd-g~~l~~~s~~~g~~~i~~~d~~~~~~~-~l-  306 (415)
T 2hqs_A          256 SGQIR--------------------------QVTDGRSNNTEPTWFPD-SQNLAFTSDQAGRPQVYKVNINGGAPQ-RI-  306 (415)
T ss_dssp             TCCEE--------------------------ECCCCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCCE-EC-
T ss_pred             CCCEE--------------------------eCcCCCCcccceEECCC-CCEEEEEECCCCCcEEEEEECCCCCEE-EE-
Confidence            76511                          11234457899999999 778887775 44  6788898875421 11 


Q ss_pred             cCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC---CeEEEEECCC
Q 004745          225 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH  279 (732)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d---g~v~iwd~~~  279 (732)
                                         ..+.. .+.+++|+|+|++|+.++.+   ..|++||+.+
T Consensus       307 -------------------~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~  344 (415)
T 2hqs_A          307 -------------------TWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  344 (415)
T ss_dssp             -------------------CCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred             -------------------ecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence                               11222 48899999999999988874   5788888876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=1.7e-22  Score=231.56  Aligned_cols=225  Identities=8%  Similarity=-0.001  Sum_probs=146.7

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCc---CeEEEEEecCCCCCEEEEEECC---------Cc
Q 004745           20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAGD---------AE   87 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~---~V~~~~~s~~~~g~~l~s~~~d---------g~   87 (732)
                      ..+.+++|+|||+++++ +.||+|++||+.+++....+ ..|..   .|.+++|+|+  |++|++++.+         +.
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~SpD--g~~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCCCSE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-ccccccccccceEEECCC--CCEEEEEecCccceeecceee
Confidence            34778999999998876 78999999999999887777 56654   4999999999  5899998774         77


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      |.+||+.++...        .+....+|...+..++|+|++ +.|+.++. +.|++||+.+++............  ++.
T Consensus        93 i~~~d~~~~~~~--------~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~--~~~  160 (723)
T 1xfd_A           93 YVLSKIPHGDPQ--------SLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV--IYN  160 (723)
T ss_dssp             EEEEESSSCCCE--------ECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEECCCBTTT--EEE
T ss_pred             EEEEECCCCceE--------eccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEecCCCCCc--eEC
Confidence            889999875321        122333455568899999965 77777775 789999998875321000000000  000


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC----------------------------------eEEEEE
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----------------------------------FARLYD  213 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg----------------------------------~v~iwd  213 (732)
                      ...    ..+.. ......+.+++|+|+ ++.|++++.|+                                  .|++||
T Consensus       161 g~~----~~v~~-ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d  234 (723)
T 1xfd_A          161 GLS----DWLYE-EEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIG  234 (723)
T ss_dssp             EEC----CHHHH-HTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEE
T ss_pred             ccc----ceeEE-EEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEE
Confidence            000    00000 000013478999999 78888887543                                  788888


Q ss_pred             CCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC----CeEEEEECCCCC
Q 004745          214 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMDVNHAG  281 (732)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d----g~v~iwd~~~~~  281 (732)
                      +.+++....+...            ...  ..+ ...+..++|+|||++|++.+..    ..|++||+.+++
T Consensus       235 ~~~~~~~~~l~~~------------~~~--~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~  291 (723)
T 1xfd_A          235 LNGPTHDLEMMPP------------DDP--RMR-EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV  291 (723)
T ss_dssp             SSSSCCCEECCCC------------CCG--GGS-SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             CCCCceeEEeeCC------------ccC--CCc-cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence            8776532222100            000  111 2258999999999988776543    579999988753

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=1e-21  Score=224.51  Aligned_cols=221  Identities=11%  Similarity=0.030  Sum_probs=132.8

Q ss_pred             hhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE-EEEccCCC-----------------cCeE
Q 004745            5 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-HSIETGHS-----------------ANVF   66 (732)
Q Consensus         5 ~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~-~~~~~~h~-----------------~~V~   66 (732)
                      ++...+....+..+  .+..+.|.  |..+++++.|+ | +||+.+++.+ ..+ ..|.                 ..|.
T Consensus        13 ~~~~~~~~~~~~~~--~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~   85 (706)
T 2z3z_A           13 LMPGGKEFYNFYPE--YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKFQTTDAFPSF   85 (706)
T ss_dssp             -----------------CTTCEEE--TTEEEEEETTE-E-EEEC-------CEE-EEHHHHHTTC-----------CCCE
T ss_pred             ccCCcccccccccc--cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEe-echhHhhhhccchhccccccccCce
Confidence            34444455555544  46667888  66777777788 8 9999999873 333 2332                 4699


Q ss_pred             EEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004745           67 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  146 (732)
Q Consensus        67 ~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~  146 (732)
                      +++|+|+  +.++++  .++.|++||+.++.           ...+..+...+.+++|+|++ +.|+++ .++.|++||+
T Consensus        86 ~~~~spd--~~~~~~--~~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~  148 (706)
T 2z3z_A           86 RTLDAGR--GLVVLF--TQGGLVGFDMLARK-----------VTYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARG  148 (706)
T ss_dssp             EEEETTT--TEEEEE--ETTEEEEEETTTTE-----------EEEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEEC
T ss_pred             eEEECCC--CeEEEE--ECCEEEEEECCCCc-----------eEEccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEec
Confidence            9999998  244444  35999999998632           34445567778999999965 777774 6799999999


Q ss_pred             CC-----CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe-----------------
Q 004745          147 RQ-----GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-----------------  204 (732)
Q Consensus       147 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~-----------------  204 (732)
                      .+     ++...........   ......        ....+...+.++.|+|+ +++|++++                 
T Consensus       149 ~~~~~~~g~~~~~~~~~~~~---~~~g~~--------~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~  216 (706)
T 2z3z_A          149 GKLGEGMSRAIAVTIDGTET---LVYGQA--------VHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPL  216 (706)
T ss_dssp             BCTTSCCCCCEESCSCCBTT---EEESSC--------CGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSS
T ss_pred             CcccccCCCcEEeccCCCCC---eEcccc--------hhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCC
Confidence            87     5532111100000   000000        00011123578999999 78888887                 


Q ss_pred             ----------------CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec
Q 004745          205 ----------------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  268 (732)
Q Consensus       205 ----------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~  268 (732)
                                      .+..|++||+.+++......                  ...+.. .+.+++|+|||++|++++.
T Consensus       217 ~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~------------------~~~~~~-~~~~~~~spdg~~l~~~~~  277 (706)
T 2z3z_A          217 EAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT------------------GEPKEK-FLTNLSWSPDENILYVAEV  277 (706)
T ss_dssp             SCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC------------------CSCTTC-EEEEEEECTTSSEEEEEEE
T ss_pred             CCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc------------------CCCCce-eEeeEEEECCCCEEEEEEe
Confidence                            45679999998764221100                  012222 5899999999999999887


Q ss_pred             CC-----eEEEEECCCC
Q 004745          269 GE-----HVYLMDVNHA  280 (732)
Q Consensus       269 dg-----~v~iwd~~~~  280 (732)
                      ++     .|++||+.++
T Consensus       278 ~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          278 NRAQNECKVNAYDAETG  294 (706)
T ss_dssp             CTTSCEEEEEEEETTTC
T ss_pred             CCCCCeeEEEEEECCCC
Confidence            75     8999998874

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=1.9e-20  Score=193.56  Aligned_cols=197  Identities=14%  Similarity=0.150  Sum_probs=127.6

Q ss_pred             EEEEEeCCCcEEEEeCC-CC--eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-CcEEEEEcCCCCCCCCCCCCCCC
Q 004745           33 LLISGSDDTHINVWSYS-SR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSGRGLDDNAITP  108 (732)
Q Consensus        33 ~lasg~~dg~i~vWd~~-~~--~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~  108 (732)
                      ++++++.|+.|++||+. ++  +.+..+  .|...+.+++|+|+  |++|++++.+ +.|.+|++....+..      ..
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spd--g~~l~~~~~~~~~v~~~~~~~~~~~~------~~   76 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGAL------TF   76 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCCE------EE
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCC--CCEEEEeecCCCeEEEEEecCCCCce------ee
Confidence            44455789999999985 34  333333  57778999999999  5888888876 999999997322211      12


Q ss_pred             ceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceE
Q 004745          109 SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK  188 (732)
Q Consensus       109 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  188 (732)
                      +..+..+. .+..++|+|++..+++++..++.|.+||+..+..           ...+...           . ....+.
T Consensus        77 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-----------~~~~~~~-----------~-~~~~~~  132 (343)
T 1ri6_A           77 AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP-----------VGVVDVV-----------E-GLDGCH  132 (343)
T ss_dssp             EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE-----------EEEEEEE-----------C-CCTTBC
T ss_pred             ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc-----------ccccccc-----------c-CCCCce
Confidence            33444333 7899999996633444455588999999952210           0001000           0 112477


Q ss_pred             EEEecCCCCCEEEEEe-CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe
Q 004745          189 SCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY  267 (732)
Q Consensus       189 ~i~~~~~~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~  267 (732)
                      +++|+|+ ++++++++ .++.|++||+.+...+.....        ...       ..+.+..+..++|+|+|++|++++
T Consensus       133 ~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--------~~~-------~~~~~~~~~~~~~~pdg~~l~~~~  196 (343)
T 1ri6_A          133 SANISPD-NRTLWVPALKQDRICLFTVSDDGHLVAQDP--------AEV-------TTVEGAGPRHMVFHPNEQYAYCVN  196 (343)
T ss_dssp             CCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEEEEE--------EEE-------ECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             EEEECCC-CCEEEEecCCCCEEEEEEecCCCceeeecc--------ccc-------ccCCCCCcceEEECCCCCEEEEEe
Confidence            8899999 66777666 899999999986221111000        000       111122478899999999876665


Q ss_pred             -cCCeEEEEECCC
Q 004745          268 -SGEHVYLMDVNH  279 (732)
Q Consensus       268 -~dg~v~iwd~~~  279 (732)
                       .++.|.+|++..
T Consensus       197 ~~~~~i~~~~~~~  209 (343)
T 1ri6_A          197 ELNSSVDVWELKD  209 (343)
T ss_dssp             TTTTEEEEEESSC
T ss_pred             CCCCEEEEEEecC
Confidence             689999999965

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.85  E-value=2.6e-19  Score=184.08  Aligned_cols=199  Identities=12%  Similarity=0.116  Sum_probs=132.8

Q ss_pred             EEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-CCcEEEEEcCCCCCCCCC
Q 004745           25 ISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLD  102 (732)
Q Consensus        25 l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg~i~vwd~~~~~~~~~~  102 (732)
                      ..|.++++ .+++++.++.|++||+.+++.+..+ ..+...+ +++|+|+  |+++++++. ++.|.+||+.+...    
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~-~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~~----   74 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-TLGYDFV-DTAITSD--CSNVVVTSDFCQTLVQIETQLEPP----   74 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-ECCCCEE-EEEECSS--SCEEEEEESTTCEEEEEECSSSSC----
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-EccCCcc-eEEEcCC--CCEEEEEeCCCCeEEEEECCCCce----
Confidence            34566555 4777888999999999999998887 4555566 9999999  476665555 89999999986421    


Q ss_pred             CCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC---cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004745          103 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  179 (732)
Q Consensus       103 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (732)
                           ....+..+..+..+++|+|++ ++++++..++   .|.+||+.+++..              ..+.         
T Consensus        75 -----~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~--------------~~~~---------  125 (331)
T 3u4y_A           75 -----KVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFI--------------STIP---------  125 (331)
T ss_dssp             -----EEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEE--------------EEEE---------
T ss_pred             -----eEEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeE--------------EEEE---------
Confidence                 034455555555559999965 7676555443   8999999876521              0000         


Q ss_pred             CCCCccceEEEEecCCCCCEEEEEeCCCe-EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004745          180 PPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  258 (732)
Q Consensus       180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  258 (732)
                         ......+++|+|++..++++...++. |.+|++.....+....             ....  . . ...+..++|+|
T Consensus       126 ---~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-------------~~~~--~-~-~~~~~~~~~sp  185 (331)
T 3u4y_A          126 ---IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-------------QEFI--S-G-GTRPFNITFTP  185 (331)
T ss_dssp             ---CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-------------EEEE--C-S-SSSEEEEEECT
T ss_pred             ---CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-------------Cccc--c-C-CCCccceEECC
Confidence               11245899999994445666666688 9999998543221110             0000  0 1 11378999999


Q ss_pred             CCCEEEEEe-cCCeEEEEECCCC
Q 004745          259 NGEEVLLSY-SGEHVYLMDVNHA  280 (732)
Q Consensus       259 ~g~~l~~~~-~dg~v~iwd~~~~  280 (732)
                      +|++|++++ .++.|++||+.++
T Consensus       186 dg~~l~v~~~~~~~v~v~d~~~~  208 (331)
T 3u4y_A          186 DGNFAFVANLIGNSIGILETQNP  208 (331)
T ss_dssp             TSSEEEEEETTTTEEEEEECSST
T ss_pred             CCCEEEEEeCCCCeEEEEECCCC
Confidence            999776665 5899999998773

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=8.5e-20  Score=184.04  Aligned_cols=179  Identities=13%  Similarity=0.106  Sum_probs=124.5

Q ss_pred             EEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC-CCCCCCCCCCCCCceeecc
Q 004745           36 SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR-FSGRGLDDNAITPSALYQC  114 (732)
Q Consensus        36 sg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~  114 (732)
                      +++.|++|++||+.+++.....  .|...|.+++|+|+  |++|++++ ++.|++||+.+ ...          ......
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spd--g~~l~~~~-~~~i~~~d~~~~~~~----------~~~~~~   81 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPD--GKYLLLNS-EGLLYRLSLAGDPSP----------EKVDTG   81 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEE--EESSCCEEEEECTT--SSEEEEEE-TTEEEEEESSSCCSC----------EECCCT
T ss_pred             CCCcceeEEEEeCCCCceeeec--cCCcceEeeEECCC--CCEEEEEc-CCeEEEEeCCCCCCc----------eEeccc
Confidence            3467899999999998876544  68899999999999  58888876 88999999986 432          233334


Q ss_pred             c-cCceeEEEEecCCCcEEEEEe--CCCcEEEEEC--CCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEE
Q 004745          115 H-TRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDF--RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  189 (732)
Q Consensus       115 h-~~~v~~l~~~p~~~~~l~s~s--~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  189 (732)
                      + ...+.+++|+|++ ++|++++  .++...+|.+  .++...                       .+.    ....+..
T Consensus        82 ~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~~-----------------------~~~----~~~~~~~  133 (297)
T 2ojh_A           82 FATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTPR-----------------------LMT----KNLPSYW  133 (297)
T ss_dssp             TCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCCCE-----------------------ECC----SSSSEEE
T ss_pred             cccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCCceE-----------------------Eee----cCCCccc
Confidence            4 4678999999965 7888887  3345555554  333210                       111    1114788


Q ss_pred             EEecCCCCCEEE-EEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe
Q 004745          190 CDISSTRPHLLL-VGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY  267 (732)
Q Consensus       190 i~~~~~~~~~l~-tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~  267 (732)
                      ++|+|+ ++.|+ ++..++.++||+++... ....+                    ..+.. .+.+++|+|+|++|+.++
T Consensus       134 ~~~spd-g~~l~~~~~~~~~~~l~~~~~~~~~~~~~--------------------~~~~~-~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          134 HGWSPD-GKSFTYCGIRDQVFDIYSMDIDSGVETRL--------------------THGEG-RNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             EEECTT-SSEEEEEEEETTEEEEEEEETTTCCEEEC--------------------CCSSS-CEEEEEECTTSSEEEEEE
T ss_pred             eEECCC-CCEEEEEECCCCceEEEEEECCCCcceEc--------------------ccCCC-ccccceECCCCCEEEEEe
Confidence            999999 56555 78889999999864321 11111                    11222 589999999999888776


Q ss_pred             c-CCeEEEEECCC
Q 004745          268 S-GEHVYLMDVNH  279 (732)
Q Consensus       268 ~-dg~v~iwd~~~  279 (732)
                      . ++.++||++..
T Consensus       192 ~~~~~~~i~~~~~  204 (297)
T 2ojh_A          192 SRTGQMQIWRVRV  204 (297)
T ss_dssp             CTTSSCEEEEEET
T ss_pred             cCCCCccEEEECC
Confidence            4 88888887753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=7.6e-19  Score=182.34  Aligned_cols=205  Identities=10%  Similarity=0.078  Sum_probs=146.3

Q ss_pred             cCCceeEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCC-EEEEEECCCcEE
Q 004745           18 HQGCVNAISWNSKGSLLISGSD-------DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVR   89 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~-------dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~-~l~s~~~dg~i~   89 (732)
                      ....+..++|+|+|++|++++.       ++.|.+||..+++.+..+.  ....+.+++|+|++  + ++++...++.|.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg--~~l~v~~~~~~~v~  114 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINNTT--QTLWFGNTVNSAVT  114 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEETTT--TEEEEEETTTTEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECCCC--CEEEEEecCCCEEE
Confidence            4567889999999998888774       5689999999999888873  34457899999994  6 455556689999


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccC---------ceeEEEEecCCCcEEEEE-eCCCcEEEEECCCCCCCCCCCCCC
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTR---------RVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSH  159 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~~p~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~  159 (732)
                      +||+.+++.          +..+..+..         .+.+++|+|++..++++. +.++.|.+||+.+++..       
T Consensus       115 ~~d~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~-------  177 (353)
T 3vgz_A          115 AIDAKTGEV----------KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK-------  177 (353)
T ss_dssp             EEETTTCCE----------EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE-------
T ss_pred             EEeCCCCee----------EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE-------
Confidence            999986432          333333221         378899999764444444 35788999999876521       


Q ss_pred             cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccc
Q 004745          160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  239 (732)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (732)
                             ..+           ..+...+.+++|+|+ +++|++++.++.|.+||+.+++.+..+...             
T Consensus       178 -------~~~-----------~~~~~~~~~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-------------  225 (353)
T 3vgz_A          178 -------TAI-----------QNTGKMSTGLALDSE-GKRLYTTNADGELITIDTADNKILSRKKLL-------------  225 (353)
T ss_dssp             -------EEE-----------CCCCTTCCCCEEETT-TTEEEEECTTSEEEEEETTTTEEEEEEECC-------------
T ss_pred             -------EEe-----------cCCCCccceEEECCC-CCEEEEEcCCCeEEEEECCCCeEEEEEEcC-------------
Confidence                   110           111224567899999 778999999999999999987654333110             


Q ss_pred             ccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCC
Q 004745          240 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  279 (732)
Q Consensus       240 ~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~  279 (732)
                         ..++.. .+..++|+|+|++|++++. ++.|.+||+.+
T Consensus       226 ---~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  262 (353)
T 3vgz_A          226 ---DDGKEH-FFINISLDTARQRAFITDSKAAEVLVVDTRN  262 (353)
T ss_dssp             ---CSSSCC-CEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred             ---CCCCCc-ccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence               011222 4788999999998877776 48999999877

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=1.1e-19  Score=187.24  Aligned_cols=72  Identities=7%  Similarity=-0.105  Sum_probs=64.0

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCC
Q 004745          604 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGG  678 (732)
Q Consensus       604 ~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~g  678 (732)
                      ++|||++|+++  ++.|++||+.+++.+..+..+ ..+.+++|+|+|++|++++.|+.|++||+.+++.+..+..
T Consensus       248 ~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          248 VNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             ECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             ECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            59999999988  799999999999999888754 5678999999999988899999999999999988776543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=1.1e-19  Score=207.61  Aligned_cols=201  Identities=12%  Similarity=-0.012  Sum_probs=139.2

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC----
Q 004745           20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR----   95 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~----   95 (732)
                      ..|.+++|+|| ++++.+. ++.|++||+.+++.....  .+...+.+++|+|+  |++|+++ .++.|++||+.+    
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~Spd--G~~la~~-~~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF--DTNEETASLDFSPV--GDRVAYV-RNHNLYIARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE--CCTTCCTTCEECTT--SSEEEEE-ETTEEEEEECBCTTSC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEcc--CCcccccCCcCCCC--CCEEEEE-ECCeEEEEecCccccc
Confidence            57999999999 6666554 599999999988766544  56777999999999  5888885 689999999986    


Q ss_pred             -CCCCCCCCCCCCCceeecccc--------------CceeEEEEecCCCcEEEEEe------------------------
Q 004745           96 -FSGRGLDDNAITPSALYQCHT--------------RRVKKLAVEVGNPHVVWSAS------------------------  136 (732)
Q Consensus        96 -~~~~~~~~~~~~~~~~~~~h~--------------~~v~~l~~~p~~~~~l~s~s------------------------  136 (732)
                       +...          .....+.              ..+.++.|+|++ ++|++++                        
T Consensus       155 ~g~~~----------~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  223 (706)
T 2z3z_A          155 MSRAI----------AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPL  223 (706)
T ss_dssp             CCCCE----------ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred             CCCcE----------EeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence             4321          1112122              235899999965 7777776                        


Q ss_pred             ---------CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC
Q 004745          137 ---------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  207 (732)
Q Consensus       137 ---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg  207 (732)
                               .+..|++||+.+++                       ...+.....+...+.+++|+|+ +++|++++.++
T Consensus       224 ~y~~~g~~~~~~~l~~~d~~~~~-----------------------~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~  279 (706)
T 2z3z_A          224 YYPMAGTPSHHVTVGIYHLATGK-----------------------TVYLQTGEPKEKFLTNLSWSPD-ENILYVAEVNR  279 (706)
T ss_dssp             CCCBTTSCCCEEEEEEEETTTTE-----------------------EEECCCCSCTTCEEEEEEECTT-SSEEEEEEECT
T ss_pred             eCCCCCCCCCeeEEEEEECCCCc-----------------------eEeeccCCCCceeEeeEEEECC-CCEEEEEEeCC
Confidence                     23457777766543                       2122222235557899999999 78888877765


Q ss_pred             -----eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC--CCCEEEEEecCCeEEEEECC
Q 004745          208 -----FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       208 -----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--~g~~l~~~~~dg~v~iwd~~  278 (732)
                           .|++||+.+++....+..             ...  ..... .+..++|+|  +|++|+++..+|.++||.+.
T Consensus       280 ~~~~~~v~~~d~~~g~~~~~~~~-------------~~~--~~~~~-~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          280 AQNECKVNAYDAETGRFVRTLFV-------------ETD--KHYVE-PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             TSCEEEEEEEETTTCCEEEEEEE-------------EEC--SSCCC-CCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCeeEEEEEECCCCceeeEEEE-------------ccC--CCeEC-ccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence                 899999988632221100             000  00000 245689999  99999999889999999876

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.83  E-value=4.3e-19  Score=197.60  Aligned_cols=197  Identities=9%  Similarity=0.003  Sum_probs=137.3

Q ss_pred             cCCceeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEEc
Q 004745           18 HQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNL   93 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~-dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd~   93 (732)
                      +..+|++++|+|||++||+++. ||+++||++.+++.. .+...+...+..+.|+|+   +++++++.   +...++|.+
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd---~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG---RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS---EEEEEEECSTTSCCEEEEEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC---eEEEEeccCCCCcceEEEEE
Confidence            3568999999999999999886 999999998766554 442333368999999997   67887775   556677766


Q ss_pred             CC--CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           94 SR--FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        94 ~~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      ..  ...          ...+... ..+...+|+|++...+++.+.++.+.+||+.+++..            .+.    
T Consensus        96 ~~~~~g~----------~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~------------~l~----  148 (582)
T 3o4h_A           96 NTSRPGE----------EQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR------------ELA----  148 (582)
T ss_dssp             ETTSTTC----------CEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE------------EEE----
T ss_pred             eccCCCc----------cccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE------------Eee----
Confidence            53  211          1122211 223456888876555555555556669999776521            111    


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCC----CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                             ..     ...+++|+|+ |++|++++.+    +.|++||+.+++.. .+                    .++.
T Consensus       149 -------~~-----~~~~~~~spD-G~~la~~~~~~~~~~~i~~~d~~~g~~~-~l--------------------~~~~  194 (582)
T 3o4h_A          149 -------RL-----PGFGFVSDIR-GDLIAGLGFFGGGRVSLFTSNLSSGGLR-VF--------------------DSGE  194 (582)
T ss_dssp             -------EE-----SSCEEEEEEE-TTEEEEEEEEETTEEEEEEEETTTCCCE-EE--------------------CCSS
T ss_pred             -------cC-----CCceEEECCC-CCEEEEEEEcCCCCeEEEEEcCCCCCce-Ee--------------------ecCC
Confidence                   00     1167899999 8899988777    78999999876532 11                    2233


Q ss_pred             cccEEEEEEcCCCCEEEEEecCC--eEEEEECCCC
Q 004745          248 SLHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNHA  280 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~dg--~v~iwd~~~~  280 (732)
                      . .+..++|+|||++|+++..++  .|++||+.++
T Consensus       195 ~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~  228 (582)
T 3o4h_A          195 G-SFSSASISPGMKVTAGLETAREARLVTVDPRDG  228 (582)
T ss_dssp             C-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred             C-ccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence            3 489999999999999888888  8999998874

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=6.4e-19  Score=177.60  Aligned_cols=237  Identities=12%  Similarity=0.063  Sum_probs=166.2

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeeEEEEccCC-CcCeEEEEEecCCCCCEEEEEE--CCCc
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGH-SANVFCTKFVPETSDELVVSGA--GDAE   87 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~-~~~~~~~~~~h-~~~V~~~~~s~~~~g~~l~s~~--~dg~   87 (732)
                      ...+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++..... ..+ ...|.+++|+|+  |++|++++  .++.
T Consensus        34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~  109 (297)
T 2ojh_A           34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-TGFATICNNDHGISPD--GALYAISDKVEFGK  109 (297)
T ss_dssp             EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-CTTCCCBCSCCEECTT--SSEEEEEECTTTSS
T ss_pred             eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-cccccccccceEECCC--CCEEEEEEeCCCCc
Confidence            445667999999999999999999987 78999999998 7776655 444 478899999999  58999988  4456


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      .+||.+....+.         ...+..+ ..+..++|+|++..++++++.++.+++|++......               
T Consensus       110 ~~l~~~~~~~~~---------~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---------------  164 (297)
T 2ojh_A          110 SAIYLLPSTGGT---------PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---------------  164 (297)
T ss_dssp             CEEEEEETTCCC---------CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---------------
T ss_pred             ceEEEEECCCCc---------eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc---------------
Confidence            667666432221         2333333 348899999976445558888999999996432210               


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEe-CCCeEEEEECCC-CCCCcccccCCCCCCccccccccccccCC
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHG  245 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~-~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (732)
                               ......+...+.++.|+|+ ++.|+.++ .++.+++|++.. ...+..+                    ..
T Consensus       165 ---------~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~~~~~~~~~~~~~--------------------~~  214 (297)
T 2ojh_A          165 ---------ETRLTHGEGRNDGPDYSPD-GRWIYFNSSRTGQMQIWRVRVDGSSVERI--------------------TD  214 (297)
T ss_dssp             ---------EEECCCSSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCEEEC--------------------CC
T ss_pred             ---------ceEcccCCCccccceECCC-CCEEEEEecCCCCccEEEECCCCCCcEEE--------------------ec
Confidence                     0111223447899999999 66666655 589999998862 2222211                    12


Q ss_pred             CccccEEEEEEcCCCCEEEEEecC-----------CeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCcc
Q 004745          246 RSSLHLTHVTFSPNGEEVLLSYSG-----------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDF  314 (732)
Q Consensus       246 ~~~~~i~~l~~sp~g~~l~~~~~d-----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (732)
                      +.. .+..++|+|+|++|++++.+           +.|++||+.+++......              ..++...+..+.|
T Consensus       215 ~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~--------------~~~~~~~~~~~~~  279 (297)
T 2ojh_A          215 SAY-GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD--------------LFGGQGTMNSPNW  279 (297)
T ss_dssp             CSE-EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE--------------EEESTTTSCSCCB
T ss_pred             CCc-ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec--------------cCCCCcccccceE
Confidence            222 58899999999999988876           569999998854322211              1233456778899


Q ss_pred             CCCccccc
Q 004745          315 LQTNIRVR  322 (732)
Q Consensus       315 ~~~g~~~~  322 (732)
                      +|+|+.++
T Consensus       280 spdg~~l~  287 (297)
T 2ojh_A          280 SPDGDEFA  287 (297)
T ss_dssp             CTTSSEEE
T ss_pred             CCCCCEEE
Confidence            99999887

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.83  E-value=3.1e-19  Score=205.07  Aligned_cols=126  Identities=8%  Similarity=-0.014  Sum_probs=88.6

Q ss_pred             CCCCccccccCCCCCCCCCCCC---CCC--CCccccccccccceeEeeeccc-cceeeecccccCCCCEEEEecCCCcEE
Q 004745          548 RGDSARETVDANGSSGSPSSSS---QND--RIPYQPETVIDMKQRYVGHCNV-GTDIKQASFLGQRGDYIASGSDDGRWF  621 (732)
Q Consensus       548 ~~~~v~~~~~s~d~~~l~~~~~---~~~--~~~~~~~~~~~~~~~~~gh~~~-~~~i~~~~f~s~dg~~lasgs~Dg~i~  621 (732)
                      +...+..++| |||++|+++..   ..+  ..+|+..+ .+....+.+|... +..+..+. |||||+++++++.||.++
T Consensus       285 ~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~-~spdg~~~~~~~~~g~~~  361 (741)
T 2ecf_A          285 QDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-NQQRVLAHETSPTWVPLHNSLR-FLDDGSILWSSERTGFQH  361 (741)
T ss_dssp             SSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-CCEEEEEEEECSSCCCCCSCCE-ECTTSCEEEEECTTSSCE
T ss_pred             cceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-CceEEEEEcCCCCcCCcCCceE-ECCCCeEEEEecCCCccE
Confidence            4556778999 99999886542   122  33366665 5566666666532 11122344 599999999999999989


Q ss_pred             EEEcC-cccEEEEEecCcccEEEE-eecCCCCeE-EEecCCC--cEEEEcCCC-CCCccccC
Q 004745          622 IWEKQ-TGRLIKMLLGDEAVVNCV-QCHPFDCVV-ATSGIDN--TIKIWTPSA-SVPSIVSG  677 (732)
Q Consensus       622 iWd~~-tg~~~~~l~gH~~~V~~v-~fsp~~~~l-~S~s~D~--~i~vW~~~~-~~~~~~~~  677 (732)
                      ||.+. +++ ...|.+|...|..+ +|+|+++.| ++++.|+  +++||++.. +.....+.
T Consensus       362 l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~  422 (741)
T 2ecf_A          362 LYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS  422 (741)
T ss_dssp             EEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred             EEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence            98876 566 88999999999988 599999865 5666666  899999864 44344433

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.82  E-value=5.6e-18  Score=175.43  Aligned_cols=197  Identities=12%  Similarity=0.148  Sum_probs=121.9

Q ss_pred             CCcEEEEeC--CCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCCCCCCCCCCCCceeecc
Q 004745           40 DTHINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQC  114 (732)
Q Consensus        40 dg~i~vWd~--~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  114 (732)
                      ++.|.+|++  .+++........+...+..++|+|+  |+ |++++.   ++.|.+|++..+..        ..+..+..
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spd--g~-l~~~~~~~~~~~v~~~~~~~g~~--------~~~~~~~~   83 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAK--DC-LYSVDKEDDEGGIAAWQIDGQTA--------HKLNTVVA   83 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTT--CE-EEEEEEETTEEEEEEEEEETTEE--------EEEEEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccC--Ce-EEEEEecCCCceEEEEEecCCcE--------EEeeeeec
Confidence            456777765  4565543221345677889999999  46 555544   68999999965332        12444455


Q ss_pred             ccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEec
Q 004745          115 HTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  193 (732)
Q Consensus       115 h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  193 (732)
                      +...+..++|+|++ ++|++++ .++.|.+|++......           ..+...........  .......+.+++|+
T Consensus        84 ~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~-----------~~~~~~~~~~~~p~--~~~~~~~~~~~~~s  149 (347)
T 3hfq_A           84 PGTPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGAL-----------TLTDTVQHSGHGPR--PEQDGSHIHYTDLT  149 (347)
T ss_dssp             ESCCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCE-----------EEEEEEECCCCCSS--TTCSSCCEEEEEEC
T ss_pred             CCCCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCe-----------eecceeecCCCCCC--ccccCCCceEEEEC
Confidence            77889999999966 6666666 7899999999642211           11111100000000  11123358899999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEE-ecCCeE
Q 004745          194 STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHV  272 (732)
Q Consensus       194 ~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~-~~dg~v  272 (732)
                      |+ ++++++...++.|++||+.....+...          ..+       ....+..+..++|+|+|++|+++ ..++.|
T Consensus       150 pd-g~l~v~~~~~~~v~~~~~~~~g~~~~~----------~~~-------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v  211 (347)
T 3hfq_A          150 PD-NRLAVIDLGSDKVYVYNVSDAGQLSEQ----------SVL-------TMEAGFGPRHLVFSPDGQYAFLAGELSSQI  211 (347)
T ss_dssp             TT-SCEEEEETTTTEEEEEEECTTSCEEEE----------EEE-------ECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CC-CcEEEEeCCCCEEEEEEECCCCcEEEe----------eeE-------EcCCCCCCceEEECCCCCEEEEEeCCCCEE
Confidence            99 567777777899999999832211110          000       00111137789999999977765 458899


Q ss_pred             EEEECCC
Q 004745          273 YLMDVNH  279 (732)
Q Consensus       273 ~iwd~~~  279 (732)
                      .+|++..
T Consensus       212 ~v~~~~~  218 (347)
T 3hfq_A          212 ASLKYDT  218 (347)
T ss_dssp             EEEEEET
T ss_pred             EEEEecC
Confidence            9999875

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=2.9e-19  Score=204.50  Aligned_cols=215  Identities=10%  Similarity=0.064  Sum_probs=133.8

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCc---CeEEEEEecCCCCCEEEEEEC---------CCcEEEE
Q 004745           24 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAG---------DAEVRLF   91 (732)
Q Consensus        24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~---~V~~~~~s~~~~g~~l~s~~~---------dg~i~vw   91 (732)
                      .++|+|||+++++ +.|++|++||+.+++....+ .+|..   .|.+++|||+  |++|++++.         ++.|++|
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpD--g~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPD--RQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTT--SSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCC--CCeEEEEecCceeEEeecceEEEEE
Confidence            7899999965555 46999999999999887666 44543   4899999999  589988876         7899999


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      |+.++....        ...+   ...+..++|+|++ +.|+.+. ++.|++||+.+++.......++..   .++.   
T Consensus        96 d~~~g~~~~--------~~~l---~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~---~v~~---  156 (719)
T 1z68_A           96 DLSNGEFVR--------GNEL---PRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITFNGREN---KIFN---  156 (719)
T ss_dssp             ETTTTEECC--------SSCC---CSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCCCCBTT---TEEE---
T ss_pred             ECCCCcccc--------ceec---CcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC---CeEc---
Confidence            998643200        0111   2458889999966 6777765 689999999887632111111000   0000   


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCC----------------------------------eEEEEECCCC
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----------------------------------FARLYDRRML  217 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg----------------------------------~v~iwd~~~~  217 (732)
                      +....+... .......+++|+|| |++|++++.|.                                  .|++||+.++
T Consensus       157 g~~~~v~~e-e~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~  234 (719)
T 1z68_A          157 GIPDWVYEE-EMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP  234 (719)
T ss_dssp             SSCCHHHHH-HTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH
T ss_pred             ccccceeee-ecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC
Confidence            000000000 00012257999999 78898887652                                  7889998875


Q ss_pred             CCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC----CeEEEEE
Q 004745          218 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMD  276 (732)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d----g~v~iwd  276 (732)
                      +....+.          ...+..+  .++.. .+..++|+||++++++....    ..|++||
T Consensus       235 ~~~~~~~----------~~~~~~~--~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          235 AYVGPQE----------VPVPAMI--ASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             HHHCCEE----------CCCCHHH--HTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             CccceeE----------ccCCccC--CCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence            4210000          0000000  12333 58999999998877765433    2477888

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.80  E-value=3e-19  Score=204.63  Aligned_cols=167  Identities=14%  Similarity=0.143  Sum_probs=111.5

Q ss_pred             cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccC---ceeEEEEecCCCcEEEEEeCC-
Q 004745           63 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASED-  138 (732)
Q Consensus        63 ~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s~s~d-  138 (732)
                      ..+.+++|+|+  |+++++ +.||+|++||+.++..          ...+..|..   .|.+++|+|++ ++|++++.+ 
T Consensus        17 ~~~~~~~~spd--g~~~~~-~~dg~i~~~d~~~g~~----------~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~   82 (723)
T 1xfd_A           17 IHDPEAKWISD--TEFIYR-EQKGTVRLWNVETNTS----------TVLIEGKKIESLRAIRYEISPDR-EYALFSYNVE   82 (723)
T ss_dssp             CCCCCCCBSSS--SCBCCC-CSSSCEEEBCGGGCCC----------EEEECTTTTTTTTCSEEEECTTS-SEEEEEESCC
T ss_pred             ccccccEEcCC--CcEEEE-eCCCCEEEEECCCCcE----------EEEeccccccccccceEEECCCC-CEEEEEecCc
Confidence            34678999999  477766 7899999999987532          344555554   49999999965 888888764 


Q ss_pred             --------CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004745          139 --------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  210 (732)
Q Consensus       139 --------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~  210 (732)
                              +.|.+||+.+++..                       .+.....+...+..++|+|+ |+.|+.++. +.|+
T Consensus        83 ~~~~~~~~~~i~~~d~~~~~~~-----------------------~l~~~~~~~~~~~~~~~SPd-G~~la~~~~-~~i~  137 (723)
T 1xfd_A           83 PIYQHSYTGYYVLSKIPHGDPQ-----------------------SLDPPEVSNAKLQYAGWGPK-GQQLIFIFE-NNIY  137 (723)
T ss_dssp             CCSSSCCCSEEEEEESSSCCCE-----------------------ECCCTTCCSCCCSBCCBCSS-TTCEEEEET-TEEE
T ss_pred             cceeecceeeEEEEECCCCceE-----------------------eccCCccccccccccEECCC-CCEEEEEEC-CeEE
Confidence                    67889999887621                       11222233345778899999 788888875 7999


Q ss_pred             EEECCCCCCCcccccCCCCCCccccccccccccCCCc--------cccEEEEEEcCCCCEEEEEecC-CeEEEEECCC
Q 004745          211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS--------SLHLTHVTFSPNGEEVLLSYSG-EHVYLMDVNH  279 (732)
Q Consensus       211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~l~~sp~g~~l~~~~~d-g~v~iwd~~~  279 (732)
                      +||+.+++.......... .  + .+       .|+.        ...+.+++|+|||++|+.++.+ +.+.+|++..
T Consensus       138 ~~~~~~g~~~~~~~~~~~-~--~-~~-------~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~  204 (723)
T 1xfd_A          138 YCAHVGKQAIRVVSTGKE-G--V-IY-------NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT  204 (723)
T ss_dssp             EESSSSSCCEEEECCCBT-T--T-EE-------EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC
T ss_pred             EEECCCCceEEEecCCCC-C--c-eE-------CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeec
Confidence            999988654322110000 0  0 00       0000        0024789999999999988764 5677787654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=1.1e-18  Score=185.41  Aligned_cols=219  Identities=11%  Similarity=0.083  Sum_probs=153.2

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC----------eeEEEE----ccCCCcCeEEEEEecCCCCCEEE---
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----------KLLHSI----ETGHSANVFCTKFVPETSDELVV---   80 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~----------~~~~~~----~~~h~~~V~~~~~s~~~~g~~l~---   80 (732)
                      +...++.+++++++.+|++++.|+ ++||+....          ..+...    ...+...|.+++|+|+  |++|+   
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd--g~~lav~~  111 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD--NLTLSACM  111 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT--SCEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC--CCEEEEEE
Confidence            445689999999999999999887 999874311          011111    0246678999999999  58888   


Q ss_pred             -EEECCCcEEEEEcCCCCCCCCC-CCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004745           81 -SGAGDAEVRLFNLSRFSGRGLD-DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  158 (732)
Q Consensus        81 -s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  158 (732)
                       +|+.|+.|+|||+.+....... ......+..+.+|...|.+++|+|+++++|++++.||+|++||++++...      
T Consensus       112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~------  185 (434)
T 2oit_A          112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV------  185 (434)
T ss_dssp             EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE------
T ss_pred             eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce------
Confidence             7888999999998753100000 00011245667899999999999976799999999999999999876310      


Q ss_pred             CcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccc
Q 004745          159 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  238 (732)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  238 (732)
                                         .....|...|.+++|+|+ +++|++|+.||.|++||++ ++....+...            
T Consensus       186 -------------------~~~~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~~~~~~~------------  232 (434)
T 2oit_A          186 -------------------CATLPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEKKVIPCP------------  232 (434)
T ss_dssp             -------------------EEEECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEEEEECCC------------
T ss_pred             -------------------eeccCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-CcccccccCC------------
Confidence                               011135568999999999 8899999999999999998 3322222100            


Q ss_pred             cccccCCCccccEEEEEEcCCCCEEEEEe-cCC------eEEEEECCCC
Q 004745          239 MHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGE------HVYLMDVNHA  280 (732)
Q Consensus       239 ~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-~dg------~v~iwd~~~~  280 (732)
                      ... ...|. ..|.+++|++++.++++.+ .+|      .+++|++...
T Consensus       233 ~~~-~~~~~-~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          233 PFY-ESDHP-VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTC-CTTSC-EEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ccc-CCCCc-eeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            000 01122 2599999999988775544 343      3899999874

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=7.8e-18  Score=174.31  Aligned_cols=158  Identities=11%  Similarity=0.068  Sum_probs=109.5

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-EEEECCCcEEEEEcCCCCCCCCC
Q 004745           24 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLD  102 (732)
Q Consensus        24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-~s~~~dg~i~vwd~~~~~~~~~~  102 (732)
                      .++++++++++++++.+++|++||+.+++.+..+..+....+..++|+|++  +++ +++..++.|.+||+.++..    
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~~~v~~~~~~~i~~~d~~t~~~----   77 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN--RTAYVLNNHYGDIYGIDLDTCKN----   77 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS--SEEEEEETTTTEEEEEETTTTEE----
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCC--CEEEEEeCCCCcEEEEeCCCCcE----
Confidence            456788899999999999999999999998888733332357899999994  654 5556789999999986421    


Q ss_pred             CCCCCCceeecc-c-----cCceeEEEEecCCCcEEEEEeCC------------CcEEEEECCCCCCCCCCCCCCcccce
Q 004745          103 DNAITPSALYQC-H-----TRRVKKLAVEVGNPHVVWSASED------------GTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus       103 ~~~~~~~~~~~~-h-----~~~v~~l~~~p~~~~~l~s~s~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                            +..+.. +     ...+..++|+|++ +++++++.+            +.|.+||+.+++.....         
T Consensus        78 ------~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---------  141 (349)
T 1jmx_B           78 ------TFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV---------  141 (349)
T ss_dssp             ------EEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS---------
T ss_pred             ------EEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCcccccee---------
Confidence                  233321 1     2337889999965 777777754            89999999875421000         


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCc
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  221 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~  221 (732)
                      .          ..    .+...+.+++|+|+ ++ +++++.  .|++||+.+++.+.
T Consensus       142 ~----------~~----~~~~~~~~~~~s~d-g~-l~~~~~--~i~~~d~~~~~~~~  180 (349)
T 1jmx_B          142 R----------TF----PMPRQVYLMRAADD-GS-LYVAGP--DIYKMDVKTGKYTV  180 (349)
T ss_dssp             E----------EE----ECCSSCCCEEECTT-SC-EEEESS--SEEEECTTTCCEEE
T ss_pred             e----------ec----cCCCcccceeECCC-Cc-EEEccC--cEEEEeCCCCceec
Confidence            0          00    01125778899999 66 555543  49999998876443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.78  E-value=1.6e-17  Score=174.83  Aligned_cols=213  Identities=14%  Similarity=0.122  Sum_probs=142.4

Q ss_pred             hhccccEeeeccCCceeE-----EEEcCCCCEEEEEeC-CC--cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCE
Q 004745            7 RRLSQERELEGHQGCVNA-----ISWNSKGSLLISGSD-DT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL   78 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~-----l~~s~dg~~lasg~~-dg--~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~   78 (732)
                      .+...++.|..|......     .+|+|||++|+.++. ++  .|.+||+.+++..... .++...+..+.|+|+  |+.
T Consensus        18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~spd--g~~   94 (388)
T 3pe7_A           18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSPD--DDA   94 (388)
T ss_dssp             TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECTT--SSE
T ss_pred             CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcCC--CCE
Confidence            345667778888766666     889999999998887 66  3888899988877655 567666667889999  589


Q ss_pred             EEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEE--EecCCCcEEEEE---------------------
Q 004745           79 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA--VEVGNPHVVWSA---------------------  135 (732)
Q Consensus        79 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~p~~~~~l~s~---------------------  135 (732)
                      |+.++.++.|++||+.++..          ......+...+....  ++|++ .+++..                     
T Consensus        95 l~~~~~~~~l~~~d~~~g~~----------~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T 3pe7_A           95 LFYVKDGRNLMRVDLATLEE----------NVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYF  163 (388)
T ss_dssp             EEEEETTTEEEEEETTTCCE----------EEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred             EEEEeCCCeEEEEECCCCcc----------eeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhc
Confidence            99999999999999987432          223333444443333  47754 666532                     


Q ss_pred             -eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecC-CCCCEEEEEeCC------C
Q 004745          136 -SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLVGGSD------A  207 (732)
Q Consensus       136 -s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~tg~~d------g  207 (732)
                       ..+..|.+||+.+++..                       .+.   .+...+..+.|+| + ++.|+....+      .
T Consensus       164 ~~~~~~l~~~d~~~g~~~-----------------------~l~---~~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~  216 (388)
T 3pe7_A          164 TKPCCRLMRVDLKTGEST-----------------------VIL---QENQWLGHPIYRPYD-DSTVAFCHEGPHDLVDA  216 (388)
T ss_dssp             GCCCEEEEEEETTTCCEE-----------------------EEE---EESSCEEEEEEETTE-EEEEEEEECSCTTTSSC
T ss_pred             cCCcceEEEEECCCCceE-----------------------Eee---cCCccccccEECCCC-CCEEEEEEecCCCCCcc
Confidence             23456888888776511                       111   1223578899999 8 6777776653      3


Q ss_pred             eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CC----eEEEEECCCC
Q 004745          208 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE----HVYLMDVNHA  280 (732)
Q Consensus       208 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg----~v~iwd~~~~  280 (732)
                      .|.++|+...... .+.                   .......+..++|+|+|+.|+..+. ++    .|++||+.++
T Consensus       217 ~l~~~d~~~~~~~-~l~-------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          217 RMWLINEDGTNMR-KVK-------------------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             SEEEEETTSCCCE-ESC-------------------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             eEEEEeCCCCceE-Eee-------------------eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence            7888887654321 110                   1111124778999999997765544 22    3899988874

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.78  E-value=5.8e-17  Score=167.17  Aligned_cols=216  Identities=7%  Similarity=0.091  Sum_probs=140.4

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCC-CcEEEEeCC--CCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-CCcEEE
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDD-THINVWSYS--SRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRL   90 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~d-g~i~vWd~~--~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg~i~v   90 (732)
                      .|...+.+++|+|+|++|++++.+ +.|++|++.  +++  .+..+ ..+. .+.+++|+|+  |++|++++. ++.|.+
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~s~d--g~~l~~~~~~~~~i~~  110 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-ALPG-SLTHISTDHQ--GQFVFVGSYNAGNVSV  110 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-ECSS-CCSEEEECTT--SSEEEEEETTTTEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc-ccCC-CCcEEEEcCC--CCEEEEEecCCCeEEE
Confidence            477889999999999999988876 999999987  554  34444 2333 7899999999  477766654 889999


Q ss_pred             EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCC-CCCCCCCCCCCcccceEEee
Q 004745           91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQ-GSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~  168 (732)
                      ||+..+..       ...+..+.. ...+.+++|+|++ +++++++ .++.|.+||+.+ ++..            .+..
T Consensus       111 ~d~~~~~~-------~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~------------~~~~  169 (343)
T 1ri6_A          111 TRLEDGLP-------VGVVDVVEG-LDGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLV------------AQDP  169 (343)
T ss_dssp             EEEETTEE-------EEEEEEECC-CTTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEE------------EEEE
T ss_pred             EECCCCcc-------ccccccccC-CCCceEEEECCCC-CEEEEecCCCCEEEEEEecCCCcee------------eecc
Confidence            99952110       012333333 3458899999966 5555555 889999999976 3310            0000


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEE-EEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCC
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                            .....  .....+..++|+|+ +++++ ++..++.|++||+.... .+...          .....  . ..++
T Consensus       170 ------~~~~~--~~~~~~~~~~~~pd-g~~l~~~~~~~~~i~~~~~~~~~g~~~~~----------~~~~~--~-~~~~  227 (343)
T 1ri6_A          170 ------AEVTT--VEGAGPRHMVFHPN-EQYAYCVNELNSSVDVWELKDPHGNIECV----------QTLDM--M-PENF  227 (343)
T ss_dssp             ------EEEEC--STTCCEEEEEECTT-SSEEEEEETTTTEEEEEESSCTTSCCEEE----------EEEEC--S-CTTC
T ss_pred             ------ccccc--CCCCCcceEEECCC-CCEEEEEeCCCCEEEEEEecCCCCcEEEE----------eeccc--c-Cccc
Confidence                  00000  11225778999999 66554 55588999999996421 11000          00000  0 0111


Q ss_pred             -ccccEEEEEEcCCCCEEEEEe-cCCeEEEEECCC
Q 004745          247 -SSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH  279 (732)
Q Consensus       247 -~~~~i~~l~~sp~g~~l~~~~-~dg~v~iwd~~~  279 (732)
                       ....+..++|+|+|++|+++. .++.|++|++..
T Consensus       228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  262 (343)
T ss_dssp             CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             cccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence             012477899999999888655 689999999874

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=2.2e-16  Score=164.36  Aligned_cols=213  Identities=13%  Similarity=0.121  Sum_probs=127.1

Q ss_pred             CCCEEEEEe----CCCcEEEEeC--CCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC----CcEEEEEcCCCCCC
Q 004745           30 KGSLLISGS----DDTHINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD----AEVRLFNLSRFSGR   99 (732)
Q Consensus        30 dg~~lasg~----~dg~i~vWd~--~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d----g~i~vwd~~~~~~~   99 (732)
                      ...+++.|+    .++.|.+|++  .+++....... +...+..++|+|+  |++|++++.+    +.|.+|++....+.
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spd--g~~l~~~~~~~~~~~~v~~~~~~~~~g~   88 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSAD--GKFVYSVNEFSKDQAAVSAFAFDKEKGT   88 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTT--SSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCC--CCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence            344566664    3568999966  45654443322 6777889999999  5889888875    79999998753222


Q ss_pred             CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004745          100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  179 (732)
Q Consensus       100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (732)
                      .      ..+.....+......+++  ++..++++...++.|.+|++.....+....        ..........   ..
T Consensus        89 ~------~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~--------~~~~~~g~~~---~~  149 (361)
T 3scy_A           89 L------HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS--------DVIEFKGSGP---DK  149 (361)
T ss_dssp             E------EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS--------EEEECCCCCS---CT
T ss_pred             E------EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc--------eeEEccCCCC---Cc
Confidence            1      123334445556777877  453344444468899999997644221110        0000000000   00


Q ss_pred             CCCCccceEEEEecCCCCCEEEEE-eCCCeEEEEECCCCCC------CcccccCCCCCCccccccccccccCCCccccEE
Q 004745          180 PPKQTLSLKSCDISSTRPHLLLVG-GSDAFARLYDRRMLPP------LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  252 (732)
Q Consensus       180 ~~~~~~~v~~i~~~~~~~~~l~tg-~~dg~v~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (732)
                      ...+...+.+++|+|+ +++|+++ ..++.|++|++.....      +....       .....   .   . .....+.
T Consensus       150 ~~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~-------~~~~~---~---~-~~~~~~~  214 (361)
T 3scy_A          150 ERQTMPHLHCVRITPD-GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG-------TPEAF---K---V-APGSGPR  214 (361)
T ss_dssp             TTCSSCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE-------EEEEE---E---C-CTTCCEE
T ss_pred             cccCCCcceEEEECCC-CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc-------cccce---e---c-CCCCCCe
Confidence            0112235688999999 6655544 4588999999875431      10000       00000   0   0 1112378


Q ss_pred             EEEEcCCCCEEEEEe-cCCeEEEEECCC
Q 004745          253 HVTFSPNGEEVLLSY-SGEHVYLMDVNH  279 (732)
Q Consensus       253 ~l~~sp~g~~l~~~~-~dg~v~iwd~~~  279 (732)
                      .++|+|+|++|++++ .++.|.+|++.+
T Consensus       215 ~~~~spdg~~l~v~~~~~~~v~v~~~~~  242 (361)
T 3scy_A          215 HLIFNSDGKFAYLINEIGGTVIAFRYAD  242 (361)
T ss_dssp             EEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred             EEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence            899999999888887 589999999875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.76  E-value=4.5e-17  Score=167.27  Aligned_cols=267  Identities=8%  Similarity=0.043  Sum_probs=176.5

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCee-EEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~-dg~i~vWd~~~~~~-~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      +.+.+..+..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+ ..+..+..+++|+|+  |++|+++..+
T Consensus        29 ~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~d--g~~l~~~~~~  104 (331)
T 3u4y_A           29 TLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVDITPD--DQFAVTVTGL  104 (331)
T ss_dssp             TCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEEECTT--SSEEEECCCS
T ss_pred             ccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-ccCCCCccceEECCC--CCEEEEecCC
Confidence            456666677677777 9999999997766655 89999999999987 6666 556666666999999  5888855544


Q ss_pred             C---cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc-EEEEECCCCCCCCCCCCCCcc
Q 004745           86 A---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        86 g---~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      +   .|.+||+.+..          .+..+. +.....+++|+|++..++++...++. |.+|++......         
T Consensus       105 ~~~~~i~v~d~~~~~----------~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~---------  164 (331)
T 3u4y_A          105 NHPFNMQSYSFLKNK----------FISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVL---------  164 (331)
T ss_dssp             SSSCEEEEEETTTTE----------EEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCE---------
T ss_pred             CCcccEEEEECCCCC----------eEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcE---------
Confidence            3   89999998642          134444 34456899999977556767777788 999999754311         


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCE-EEEEeCCCeEEEEECCCCCC---CcccccCCCCCCcccccc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL-LLVGGSDAFARLYDRRMLPP---LTSCQKRMSPPPCVNYFC  237 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-l~tg~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~  237 (732)
                           .+.. .  ..+    ........++|+|+ +++ ++++..++.|++||+.+++.   +..+              
T Consensus       165 -----~~~~-~--~~~----~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~--------------  217 (331)
T 3u4y_A          165 -----FDTG-Q--EFI----SGGTRPFNITFTPD-GNFAFVANLIGNSIGILETQNPENITLLNAV--------------  217 (331)
T ss_dssp             -----EEEE-E--EEE----CSSSSEEEEEECTT-SSEEEEEETTTTEEEEEECSSTTSCEEEEEE--------------
T ss_pred             -----eecC-C--ccc----cCCCCccceEECCC-CCEEEEEeCCCCeEEEEECCCCcccceeeec--------------
Confidence                 1110 0  000    11224689999999 664 45555789999999988765   3222              


Q ss_pred             ccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCC
Q 004745          238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQ  316 (732)
Q Consensus       238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (732)
                            ...  ..+..++|+|+|++|++++. ++.|.+||+.+++..........    +...+   ........++|+|
T Consensus       218 ------~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~sp  282 (331)
T 3u4y_A          218 ------GTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG----LLIDP---RPLFGANQMALNK  282 (331)
T ss_dssp             ------ECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC----CCCCC---GGGTTCCCEEECT
T ss_pred             ------cCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc----cccCC---CCcccccceEECC
Confidence                  111  13678999999998877764 78999999988543221111100    00001   1111225579999


Q ss_pred             CccccccccccCcchhhHHHHHHHhhhhcCC
Q 004745          317 TNIRVRGEVATGLGKCRMLVEIARNSLEEGK  347 (732)
Q Consensus       317 ~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~  347 (732)
                      ||+.+.  ++...++.+.+     |++....
T Consensus       283 dg~~l~--v~~~~~~~v~v-----~d~~~~~  306 (331)
T 3u4y_A          283 TETKLF--ISANISRELKV-----FTISGKV  306 (331)
T ss_dssp             TSSEEE--EEETTTTEEEE-----EETTSCE
T ss_pred             CCCEEE--EecCCCCcEEE-----EEecCCc
Confidence            999875  14555668888     8876443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.73  E-value=7.6e-17  Score=171.32  Aligned_cols=221  Identities=10%  Similarity=0.006  Sum_probs=146.9

Q ss_pred             ccCCceeEEEEcCCCCEEE----EEeCCCcEEEEeCCCC--------ee---EEEEccCCCcCeEEEEEecCCCCCEEEE
Q 004745           17 GHQGCVNAISWNSKGSLLI----SGSDDTHINVWSYSSR--------KL---LHSIETGHSANVFCTKFVPETSDELVVS   81 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~la----sg~~dg~i~vWd~~~~--------~~---~~~~~~~h~~~V~~~~~s~~~~g~~l~s   81 (732)
                      .|...|++++|+|+|++||    +|+.|++|+|||+.++        +.   +..+ .+|...|.+++|+|+. +.+|++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~-~~~las  167 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-KDAGGMVIDMKWNPTV-PSMVAV  167 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-CSGGGSEEEEEECSSC-TTEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-CCCCCceEEEEECCCC-CCEEEE
Confidence            3567899999999999999    7889999999998754        21   2333 6799999999999984 489999


Q ss_pred             EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004745           82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      ++.||+|++||+++..          .+....+|...|++++|+|+ +++|++|+.||.|++||++ ++..         
T Consensus       168 ~s~Dg~v~iwD~~~~~----------~~~~~~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~---------  226 (434)
T 2oit_A          168 CLADGSIAVLQVTETV----------KVCATLPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEK---------  226 (434)
T ss_dssp             EETTSCEEEEEESSSE----------EEEEEECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEE---------
T ss_pred             EECCCeEEEEEcCCCc----------ceeeccCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-Cccc---------
Confidence            9999999999998642          13455678899999999996 5899999999999999987 3210         


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEE-EeCCC------eEEEEECCCCCCCcccccCCCCCCccc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDA------FARLYDRRMLPPLTSCQKRMSPPPCVN  234 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t-g~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~  234 (732)
                         ..+..      .......|...|.++.|+++ +.++++ +..+|      .+++||++..+......        ..
T Consensus       227 ---~~~~~------~~~~~~~~~~~v~~v~w~~~-~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~--------~~  288 (434)
T 2oit_A          227 ---KVIPC------PPFYESDHPVRVLDVLWIGT-YVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEI--------FV  288 (434)
T ss_dssp             ---EEECC------CTTCCTTSCEEEEEEEEEET-TEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCE--------EE
T ss_pred             ---ccccC------CcccCCCCceeEEEEEEecC-ceEEEEEccCCCccCCCCceEEEEeccCCCCCCcc--------eE
Confidence               00000      00011234558999999997 555543 33443      38999998653211110        00


Q ss_pred             cccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCC
Q 004745          235 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  279 (732)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~  279 (732)
                      .+........+... +-..+.+-++.+++++++. .+.|.|.....
T Consensus       289 ~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~  333 (434)
T 2oit_A          289 NFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILARQS  333 (434)
T ss_dssp             ECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred             ecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEecC
Confidence            01000000011122 1223445577777766665 66788776443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.73  E-value=3.8e-16  Score=161.83  Aligned_cols=169  Identities=8%  Similarity=0.096  Sum_probs=114.5

Q ss_pred             CCcCeEEEEEecCCCCCEEEEEEC-------CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEE
Q 004745           61 HSANVFCTKFVPETSDELVVSGAG-------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  133 (732)
Q Consensus        61 h~~~V~~~~~s~~~~g~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~  133 (732)
                      ....+..++|+|+  |+++++++.       ++.|.+||+.+..          .+..+. ....+..++|+|++..+++
T Consensus        39 ~~~~~~~~~~s~d--g~~l~~~~~~~~~~~~~~~v~~~d~~~~~----------~~~~~~-~~~~~~~~~~s~dg~~l~v  105 (353)
T 3vgz_A           39 VGKGAYEMAYSQQ--ENALWLATSQSRKLDKGGVVYRLDPVTLE----------VTQAIH-NDLKPFGATINNTTQTLWF  105 (353)
T ss_dssp             EESSEEEEEEETT--TTEEEEEECCCTTTEESEEEEEECTTTCC----------EEEEEE-ESSCCCSEEEETTTTEEEE
T ss_pred             hccCccceEECCC--CCEEEEEcCCCcCCCCCccEEEEcCCCCe----------EEEEEe-cCCCcceEEECCCCCEEEE
Confidence            4456889999999  477777763       5689999998642          133443 2445788999997755667


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe--CCCeEEE
Q 004745          134 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARL  211 (732)
Q Consensus       134 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~--~dg~v~i  211 (732)
                      +...++.|.+||+.+++..            ..+....+..    ........+.++.|+|+ ++++++++  .++.|.+
T Consensus       106 ~~~~~~~v~~~d~~~~~~~------------~~~~~~~~~~----~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A          106 GNTVNSAVTAIDAKTGEVK------------GRLVLDDRKR----TEEVRPLQPRELVADDA-TNTVYISGIGKESVIWV  168 (353)
T ss_dssp             EETTTTEEEEEETTTCCEE------------EEEESCCCCC----CSSCCCCEEEEEEEETT-TTEEEEEEESSSCEEEE
T ss_pred             EecCCCEEEEEeCCCCeeE------------EEEecCCCcc----ccccCCCCCceEEECCC-CCEEEEEecCCCceEEE
Confidence            7777899999999887621            1111110000    00011123688999999 56666554  4789999


Q ss_pred             EECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          212 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       212 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      ||+.+.+.+..+.                    .+ ...+..++|+|+|++|++++.++.|.+||+.++
T Consensus       169 ~d~~~~~~~~~~~--------------------~~-~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~  216 (353)
T 3vgz_A          169 VDGGNIKLKTAIQ--------------------NT-GKMSTGLALDSEGKRLYTTNADGELITIDTADN  216 (353)
T ss_dssp             EETTTTEEEEEEC--------------------CC-CTTCCCCEEETTTTEEEEECTTSEEEEEETTTT
T ss_pred             EcCCCCceEEEec--------------------CC-CCccceEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            9998875443321                    01 113667899999999999999999999998873

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.73  E-value=4.8e-15  Score=154.20  Aligned_cols=224  Identities=6%  Similarity=0.019  Sum_probs=136.4

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCC----CcEEEEeCCC--Ce--eEEEEccCCCcCeEEEEEecCCCCCEEEEEE-CCCcE
Q 004745           18 HQGCVNAISWNSKGSLLISGSDD----THINVWSYSS--RK--LLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEV   88 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~d----g~i~vWd~~~--~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~-~dg~i   88 (732)
                      |...+..++|+|||++|++++.+    +.|.+|++..  ++  .+... ..+......+++  +  +++|++++ .++.|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~--d--g~~l~~~~~~~~~v  122 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT--N--GKNIVTANYSGGSI  122 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE--C--SSEEEEEETTTTEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE--C--CCEEEEEECCCCEE
Confidence            67788889999999999999875    7999998765  43  33333 335566777887  4  46666666 58899


Q ss_pred             EEEEcCCCCCCCCCCCCCCCcee--------eccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004745           89 RLFNLSRFSGRGLDDNAITPSAL--------YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  160 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  160 (732)
                      .+|++........    ......        ...+...+.+++|+|++..++++...++.|.+|++..............
T Consensus       123 ~~~~~~~~g~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~  198 (361)
T 3scy_A          123 TVFPIGQDGALLP----ASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLT  198 (361)
T ss_dssp             EEEEBCTTSCBCS----CSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEE
T ss_pred             EEEEeCCCCcCcc----cceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceee
Confidence            9999975321100    000000        1112334688999997644555555688999999876431000000000


Q ss_pred             ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe-CCCeEEEEECCCCCCCcccccCCCCCCcccccccc
Q 004745          161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  239 (732)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (732)
                      ........          .  ........++|+|+ ++++++++ .++.|++||+.+++.. .+          ...   
T Consensus       199 ~~~~~~~~----------~--~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~~~~g~~~-~~----------~~~---  251 (361)
T 3scy_A          199 KGTPEAFK----------V--APGSGPRHLIFNSD-GKFAYLINEIGGTVIAFRYADGMLD-EI----------QTV---  251 (361)
T ss_dssp             EEEEEEEE----------C--CTTCCEEEEEECTT-SSEEEEEETTTCEEEEEEEETTEEE-EE----------EEE---
T ss_pred             ccccccee----------c--CCCCCCeEEEEcCC-CCEEEEEcCCCCeEEEEEecCCceE-Ee----------EEE---
Confidence            00000000          0  11224678999999 67776666 6899999999854311 00          000   


Q ss_pred             ccccCCCccccEEEEEEcCCCCEEEEEecC--CeEEEEECCC
Q 004745          240 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--EHVYLMDVNH  279 (732)
Q Consensus       240 ~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d--g~v~iwd~~~  279 (732)
                      ... ..+.. ....++|+|+|++|+++..+  +.|.+|++..
T Consensus       252 ~~~-~~~~~-~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~  291 (361)
T 3scy_A          252 AAD-TVNAQ-GSGDIHLSPDGKYLYASNRLKADGVAIFKVDE  291 (361)
T ss_dssp             ESC-SSCCC-CEEEEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred             ecC-CCCCC-CcccEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence            000 11112 36899999999999777664  8999999863

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.72  E-value=6.3e-17  Score=180.13  Aligned_cols=67  Identities=7%  Similarity=-0.012  Sum_probs=61.4

Q ss_pred             ccCCCCEEEEecCCC--cEEEEEcCcccEEEEEecCcccEEEEe--------ecCCCCeEEEecCCCcEEEEcCCCCCCc
Q 004745          604 LGQRGDYIASGSDDG--RWFIWEKQTGRLIKMLLGDEAVVNCVQ--------CHPFDCVVATSGIDNTIKIWTPSASVPS  673 (732)
Q Consensus       604 ~s~dg~~lasgs~Dg--~i~iWd~~tg~~~~~l~gH~~~V~~v~--------fsp~~~~l~S~s~D~~i~vW~~~~~~~~  673 (732)
                      |||||++||+++.|+  +|++||+.++++. .+.+|...|.+++        |+|||.++++++.|++++||++  ++..
T Consensus       202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          202 ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred             ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence            699999999988999  9999999999988 8899998898888        9999999999999999999999  5444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.71  E-value=1e-15  Score=175.16  Aligned_cols=114  Identities=9%  Similarity=0.043  Sum_probs=89.5

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcC-----eEEEEEecCCCCCEEEEEECC---------
Q 004745           20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-----VFCTKFVPETSDELVVSGAGD---------   85 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~-----V~~~~~s~~~~g~~l~s~~~d---------   85 (732)
                      .....++|+|||++|+++  |++|++||+.++++...+ .+|...     ...++|||+  |++|+.++.+         
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTT--SSEEEEEEEEEECSSSCEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECCC--CCEEEEEECCeeeEEEccc
Confidence            346689999999999986  899999999999987766 566533     244789999  5899888876         


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  151 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~  151 (732)
                      +.+.+||+.++.           ...+..|...+...+|+|++ +.||.+. ++.|++||+.+++.
T Consensus        92 ~~~~~~d~~~~~-----------~~~l~~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~~~~  144 (740)
T 4a5s_A           92 ASYDIYDLNKRQ-----------LITEERIPNNTQWVTWSPVG-HKLAYVW-NNDIYVKIEPNLPS  144 (740)
T ss_dssp             EEEEEEETTTTE-----------ECCSSCCCTTEEEEEECSST-TCEEEEE-TTEEEEESSTTSCC
T ss_pred             eEEEEEECCCCc-----------EEEcccCCCcceeeEECCCC-CEEEEEE-CCeEEEEECCCCce
Confidence            566799999743           23455677889999999966 6676664 68999999988763

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.70  E-value=5.7e-16  Score=159.28  Aligned_cols=235  Identities=11%  Similarity=0.127  Sum_probs=158.6

Q ss_pred             hccccEeeeccC-C-ceeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCC----CcCeEEEEEecCCCCCEEE
Q 004745            8 RLSQERELEGHQ-G-CVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGH----SANVFCTKFVPETSDELVV   80 (732)
Q Consensus         8 ~~~~~~~l~~h~-~-~V~~l~~s~dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h----~~~V~~~~~s~~~~g~~l~   80 (732)
                      +.+.++.+.... . .+..++|+|+|++++ +++.++.|.+||+.+++.+..+..++    ...+.+++|+|+  |++|+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~   97 (337)
T 1pby_B           20 KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPD--GKTLA   97 (337)
T ss_dssp             TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTT--SSEEE
T ss_pred             CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCC--CCEEE
Confidence            345555555322 2 588999999998664 55667899999999999887773333    236789999999  57888


Q ss_pred             EEE------------CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004745           81 SGA------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  148 (732)
Q Consensus        81 s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  148 (732)
                      +++            .++.|.+||+.+..          .+..+.. ...+.+++|+|++ ++|+++  ++.|.+||+.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~-~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~  163 (337)
T 1pby_B           98 IYESPVRLELTHFEVQPTRVALYDAETLS----------RRKAFEA-PRQITMLAWARDG-SKLYGL--GRDLHVMDPEA  163 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEETTTTE----------EEEEEEC-CSSCCCEEECTTS-SCEEEE--SSSEEEEETTT
T ss_pred             EEecccccccccccccCceEEEEECCCCc----------EEEEEeC-CCCcceeEECCCC-CEEEEe--CCeEEEEECCC
Confidence            876            57999999998632          1333332 4567889999966 555555  68899999987


Q ss_pred             CCCCCCCCCC--------Cccc----------------------------------ceEEeeccCCccccccCCCCCccc
Q 004745          149 GSSCPPAGSS--------HQEC----------------------------------RNILLDLRCGAKRSLADPPKQTLS  186 (732)
Q Consensus       149 ~~~~~~~~~~--------~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  186 (732)
                      ++........        ....                                  ...++++.++... ......+...
T Consensus       164 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~  242 (337)
T 1pby_B          164 GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVF  242 (337)
T ss_dssp             TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSC
T ss_pred             CcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCc
Confidence            6542110000        0000                                  1134444444332 1111223345


Q ss_pred             eEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEE
Q 004745          187 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS  266 (732)
Q Consensus       187 v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~  266 (732)
                      +.+++|+|+ +++++++  ++.|++||+.+++.+..+.                    ..  ..+.+++|+|+|++|+++
T Consensus       243 ~~~~~~s~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~--------------------~~--~~~~~~~~s~dg~~l~~~  297 (337)
T 1pby_B          243 YFSTAVNPA-KTRAFGA--YNVLESFDLEKNASIKRVP--------------------LP--HSYYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             EEEEEECTT-SSEEEEE--ESEEEEEETTTTEEEEEEE--------------------CS--SCCCEEEECTTSCEEEEE
T ss_pred             eeeEEECCC-CCEEEEe--CCeEEEEECCCCcCcceec--------------------CC--CceeeEEECCCCCEEEEE
Confidence            678999999 7788877  7899999998765443321                    01  136789999999999999


Q ss_pred             ecCCeEEEEECCCCCCcc
Q 004745          267 YSGEHVYLMDVNHAGGRA  284 (732)
Q Consensus       267 ~~dg~v~iwd~~~~~~~~  284 (732)
                      +.++.|++||+.+++...
T Consensus       298 ~~~~~i~v~d~~~~~~~~  315 (337)
T 1pby_B          298 GALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             SBSSEEEEEETTTCCEEE
T ss_pred             cCCCcEEEEECcCCcEEE
Confidence            999999999999865443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.68  E-value=1.8e-16  Score=181.25  Aligned_cols=160  Identities=15%  Similarity=0.160  Sum_probs=103.2

Q ss_pred             EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccC---ceeEEEEecCCCcEEEEEeC-----
Q 004745           66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASE-----  137 (732)
Q Consensus        66 ~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s~s~-----  137 (732)
                      .+++|+|+  |.+++ .+.|+.|++||+.++..          ...+..|..   .+.+++|+|++ ++|++++.     
T Consensus        19 ~~~~~s~d--g~~~~-~~~d~~i~~~~~~~g~~----------~~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~   84 (719)
T 1z68_A           19 FFPNWISG--QEYLH-QSADNNIVLYNIETGQS----------YTILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLW   84 (719)
T ss_dssp             CCCEESSS--SEEEE-ECTTSCEEEEESSSCCE----------EEEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECS
T ss_pred             CccEECCC--CeEEE-EcCCCCEEEEEcCCCcE----------EEEEccccccccceeeEEECCCC-CeEEEEecCceeE
Confidence            37899999  45544 45799999999987432          333444433   38999999965 77877765     


Q ss_pred             ----CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEE
Q 004745          138 ----DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  213 (732)
Q Consensus       138 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd  213 (732)
                          ++.|++||+.+++....                    ..+      ...+..++|+|+ |+.|+.+. ++.|++||
T Consensus        85 ~~s~~~~i~~~d~~~g~~~~~--------------------~~l------~~~~~~~~~SPD-G~~la~~~-~~~i~~~~  136 (719)
T 1z68_A           85 RYSYTATYYIYDLSNGEFVRG--------------------NEL------PRPIQYLCWSPV-GSKLAYVY-QNNIYLKQ  136 (719)
T ss_dssp             SSCEEEEEEEEETTTTEECCS--------------------SCC------CSSBCCEEECSS-TTCEEEEE-TTEEEEES
T ss_pred             EeecceEEEEEECCCCccccc--------------------eec------CcccccceECCC-CCEEEEEE-CCeEEEEe
Confidence                68999999988763100                    001      125778999999 77888875 78999999


Q ss_pred             CCCCCCCcccccCCCCCCccccccccccccCCCcc--------ccEEEEEEcCCCCEEEEEecC-CeEEEEECC
Q 004745          214 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS--------LHLTHVTFSPNGEEVLLSYSG-EHVYLMDVN  278 (732)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~l~~sp~g~~l~~~~~d-g~v~iwd~~  278 (732)
                      +.+++........    .....+       .|+..        ....+++|+|||++|+.++.| +.+.+|.+.
T Consensus       137 ~~~g~~~~l~~~~----~~~~v~-------~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~  199 (719)
T 1z68_A          137 RPGDPPFQITFNG----RENKIF-------NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYS  199 (719)
T ss_dssp             STTSCCEECCCCC----BTTTEE-------ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEE
T ss_pred             CCCCCcEEEecCC----CcCCeE-------cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEee
Confidence            9877543211000    000000       01110        012579999999999998865 555666543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.68  E-value=3.4e-15  Score=155.48  Aligned_cols=196  Identities=10%  Similarity=0.012  Sum_probs=119.2

Q ss_pred             EEEEEeCC--CcEEEEeC--CCCeeEE--EEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC-CCCCCCCCCCC
Q 004745           33 LLISGSDD--THINVWSY--SSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS-RFSGRGLDDNA  105 (732)
Q Consensus        33 ~lasg~~d--g~i~vWd~--~~~~~~~--~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~  105 (732)
                      +|++|+..  +.|.+|++  .+++...  .........+..++|+|+  |++|++++.+ .|.+|++. ++.  .     
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd--g~~l~~~~~~-~v~~~~~~~~g~--~-----   73 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE--RKNIYGAAMK-KWSSFAVKSPTE--I-----   73 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT--SSEEEEEEBT-EEEEEEEEETTE--E-----
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC--CCEEEEEccc-eEEEEEECCCCC--E-----
Confidence            35556553  46887764  5665432  221134456889999999  5889988887 99999986 421  1     


Q ss_pred             CCCceeeccccCceeEEEEecCCCc-EEEEEe-------------CCCcEEEEECCC-CCCCCCCCCCCcccceEEeecc
Q 004745          106 ITPSALYQCHTRRVKKLAVEVGNPH-VVWSAS-------------EDGTLRQHDFRQ-GSSCPPAGSSHQECRNILLDLR  170 (732)
Q Consensus       106 ~~~~~~~~~h~~~v~~l~~~p~~~~-~l~s~s-------------~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~  170 (732)
                       ..+.....+ ..+.+++|+|++.. +++++.             .++.+.+|++.. ++..           ..+....
T Consensus        74 -~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~-----------~~~~~~~  140 (365)
T 1jof_A           74 -VHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE-----------KNVQNYE  140 (365)
T ss_dssp             -EEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE-----------EEEEEEE
T ss_pred             -EEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc-----------ceEeeEE
Confidence             001111111 23556899996632 344543             689999999974 3210           0000000


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEEEEEeC-CCeEEEEECC-CCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                                ..+...+.+++|+|+ +++|+++.. ++.|++||+. +++... .          ..+   ..  ..+ +
T Consensus       141 ----------~~~~~~~~~~~~spd-G~~l~~~~~~~~~v~~~~~~~~g~~~~-~----------~~~---~~--~~~-g  192 (365)
T 1jof_A          141 ----------YQENTGIHGMVFDPT-ETYLYSADLTANKLWTHRKLASGEVEL-V----------GSV---DA--PDP-G  192 (365)
T ss_dssp             ----------CCTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSCEEE-E----------EEE---EC--SST-T
T ss_pred             ----------eCCCCcceEEEECCC-CCEEEEEcCCCCEEEEEEECCCCCEEE-e----------eeE---ec--CCC-C
Confidence                      012336889999999 677777654 6899999998 543210 0          000   00  011 1


Q ss_pred             ccEEEEEEcCCCCEEEEEec-CCeEEEEECCC
Q 004745          249 LHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  279 (732)
Q Consensus       249 ~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~  279 (732)
                      ..+..++|+|+|++|++++. ++.|.+|++..
T Consensus       193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  224 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CCCCEeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence            24889999999999988876 78999998763

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=8.2e-16  Score=162.12  Aligned_cols=211  Identities=10%  Similarity=0.034  Sum_probs=129.1

Q ss_pred             hccccEeeeccCCc-----eeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE
Q 004745            8 RLSQERELEGHQGC-----VNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV   79 (732)
Q Consensus         8 ~~~~~~~l~~h~~~-----V~~l~~s~dg~~lasg~~d---g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l   79 (732)
                      +.+.++.|..+...     +..++|+|||++|+.....   ..|.+||+.+++..... .++......+.|+|+  |++|
T Consensus        19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~spd--g~~l   95 (396)
T 3c5m_A           19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-EGKGDNTFGGFISTD--ERAF   95 (396)
T ss_dssp             TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-CSSCBCTTTCEECTT--SSEE
T ss_pred             CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-cCCCCccccceECCC--CCEE
Confidence            44455666665444     7889999999998877543   46888999888765433 333333444889999  5899


Q ss_pred             EEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeE-------------------EEEecCCCcEEEEE-----
Q 004745           80 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK-------------------LAVEVGNPHVVWSA-----  135 (732)
Q Consensus        80 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------------l~~~p~~~~~l~s~-----  135 (732)
                      +.++.++.|++||+.++..          ......+......                   +.|+|++ +.++..     
T Consensus        96 ~~~~~~~~l~~~d~~~~~~----------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~  164 (396)
T 3c5m_A           96 FYVKNELNLMKVDLETLEE----------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHT  164 (396)
T ss_dssp             EEEETTTEEEEEETTTCCE----------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHT
T ss_pred             EEEEcCCcEEEEECCCCCc----------EEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccC
Confidence            9999999999999986432          1222222221111                   2345543 333322     


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecC-CCCCEEEEEeCC------Ce
Q 004745          136 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLVGGSD------AF  208 (732)
Q Consensus       136 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~tg~~d------g~  208 (732)
                      ..+..|.+||+.+++..                       .+.   .+...+..+.|+| + +..|+..+.+      ..
T Consensus       165 ~~~~~l~~~d~~~g~~~-----------------------~~~---~~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~  217 (396)
T 3c5m_A          165 NPTCRLIKVDIETGELE-----------------------VIH---QDTAWLGHPIYRPFD-DSTVGFCHEGPHDLVDAR  217 (396)
T ss_dssp             CCCEEEEEEETTTCCEE-----------------------EEE---EESSCEEEEEEETTE-EEEEEEEECSCSSSCSCC
T ss_pred             CCcceEEEEECCCCcEE-----------------------eec---cCCcccccceECCCC-CCEEEEEecCCCCCCCce
Confidence            34557888887765411                       111   1223678899999 5 6666665543      36


Q ss_pred             EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC-----CeEEEEECCC
Q 004745          209 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-----EHVYLMDVNH  279 (732)
Q Consensus       209 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d-----g~v~iwd~~~  279 (732)
                      |.+||+...+.. .+.                   .......+..++|+|+|++|+.++.+     +.|++||+.+
T Consensus       218 l~~~d~~~~~~~-~l~-------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  273 (396)
T 3c5m_A          218 MWLVNEDGSNVR-KIK-------------------EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET  273 (396)
T ss_dssp             CEEEETTSCCCE-ESS-------------------CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred             EEEEECCCCcee-Eee-------------------ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence            888888654311 110                   10112247889999999987777553     3477777765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.65  E-value=3.8e-15  Score=168.55  Aligned_cols=206  Identities=10%  Similarity=0.005  Sum_probs=136.4

Q ss_pred             EeeeccCCceeEEEEcCCCCEEEEE--eCCCcEEEEeCCCCeeEEEEccCCCcCeE---------EEEEe--cCCCCCE-
Q 004745           13 RELEGHQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVF---------CTKFV--PETSDEL-   78 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~dg~~lasg--~~dg~i~vWd~~~~~~~~~~~~~h~~~V~---------~~~~s--~~~~g~~-   78 (732)
                      ..+.+|...|..++|++++-++++.  +.++...||....+.....+ ..|...+.         ...|+  |+  |+. 
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SPD--g~~~   93 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRPA--GGPL   93 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCSS--SSCE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeecC--CCeE
Confidence            4567899999999999887777777  56889999996555555556 56666666         66676  88  466 


Q ss_pred             EEEEEC-CCcEEEEEcC--C-CCCCCCCCCCCCCceeecc-----ccCceeEEEEecCCCcEEEEEeCC----------C
Q 004745           79 VVSGAG-DAEVRLFNLS--R-FSGRGLDDNAITPSALYQC-----HTRRVKKLAVEVGNPHVVWSASED----------G  139 (732)
Q Consensus        79 l~s~~~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~p~~~~~l~s~s~d----------g  139 (732)
                      |+.++. +..|.++++.  . +.           ...+..     |...+..++|+|++ +.|+.++.+          .
T Consensus        94 la~~~~~~~~l~~~~~~~~g~~~-----------~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~  161 (662)
T 3azo_A           94 LVFTHFGDQRLYAFEPDAPGGAV-----------PRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRR  161 (662)
T ss_dssp             EEEEBTTTCCEEEECTTSTTCCC-----------CEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEE
T ss_pred             EEEEECCCCeEEEEcCCCCCCCC-----------CEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCcee
Confidence            665543 4556666654  1 21           233333     56788999999966 777777766          5


Q ss_pred             cEEEEECCC------CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-------
Q 004745          140 TLRQHDFRQ------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-------  206 (732)
Q Consensus       140 ~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-------  206 (732)
                      .|++||+.+      ++..                       .+.  ..+...+..++|+|| |++|+.++.+       
T Consensus       162 ~i~~~~~~~~~~~~~~~~~-----------------------~l~--~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~  215 (662)
T 3azo_A          162 FLAAVPLDGSAAADRSAVR-----------------------ELS--DDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWE  215 (662)
T ss_dssp             EEEEEETTSTTTTCGGGSE-----------------------ESS--CSCSSEECCCEECTT-SSEEEEEEECTTCCTTT
T ss_pred             EEEEEECCCCccccCCcee-----------------------EEE--ecCCCcccCceECCC-CCEEEEEECCCCCCCCC
Confidence            799999876      3210                       111  012235677899999 7888877754       


Q ss_pred             -CeEEEEECC-CCC--CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCC--eEEEEECCC
Q 004745          207 -AFARLYDRR-MLP--PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNH  279 (732)
Q Consensus       207 -g~v~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg--~v~iwd~~~  279 (732)
                       ..|++||+. ++.  ....+.                   .++.. .+..++|+|||++++++..++  .|++||+.+
T Consensus       216 ~~~i~~~d~~~~g~~~~~~~l~-------------------~~~~~-~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~  274 (662)
T 3azo_A          216 GTELKTARVTEDGRFADTRTLL-------------------GGPEE-AIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT  274 (662)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEE-------------------EETTB-CEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred             CcEEEEEEECCCCcccccEEeC-------------------CCCCc-eEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence             379999998 441  111110                   11222 588999999999777777788  555555544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.65  E-value=7.8e-15  Score=151.63  Aligned_cols=225  Identities=10%  Similarity=0.122  Sum_probs=142.7

Q ss_pred             ccEeeeccCCceeEEEEcCCCCEEEEEe-CCCcEEEEeCC-CC--eeEEEEccC--------CCcCeEEEEEecCCCCCE
Q 004745           11 QERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYS-SR--KLLHSIETG--------HSANVFCTKFVPETSDEL   78 (732)
Q Consensus        11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~-~dg~i~vWd~~-~~--~~~~~~~~~--------h~~~V~~~~~s~~~~g~~   78 (732)
                      ++..+..|...+..++|+|||++|++++ .++.|.+|++. ++  +.+..+...        +...+.+++|+|++  ++
T Consensus        77 ~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg--~l  154 (347)
T 3hfq_A           77 KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN--RL  154 (347)
T ss_dssp             EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS--CE
T ss_pred             EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC--cE
Confidence            4555566888999999999999888887 67999999996 33  333333111        12348899999994  66


Q ss_pred             EEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecc-ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004745           79 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  157 (732)
Q Consensus        79 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  157 (732)
                      +++...++.|.+|++... +..      .....+.. ....+..++|+|++..++++...++.|.+|++......     
T Consensus       155 ~v~~~~~~~v~~~~~~~~-g~~------~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~-----  222 (347)
T 3hfq_A          155 AVIDLGSDKVYVYNVSDA-GQL------SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA-----  222 (347)
T ss_dssp             EEEETTTTEEEEEEECTT-SCE------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-----
T ss_pred             EEEeCCCCEEEEEEECCC-CcE------EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc-----
Confidence            676667899999999831 211      11122222 22367889999976435556677889999998752100     


Q ss_pred             CCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEE-EEEeCCCeEEEEECCCCCCCcccccCCCCCCccccc
Q 004745          158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  236 (732)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  236 (732)
                           ...+.....     ..........+..++|+|+ +++| ++...++.|.+||+.....+..+          ..+
T Consensus       223 -----~~~~~~~~~-----~~~~~~~~~~~~~i~~spd-G~~l~v~~~~~~~v~v~~~~~~g~~~~~----------~~~  281 (347)
T 3hfq_A          223 -----FTQLGIVKT-----IPADYTAHNGAAAIRLSHD-GHFLYVSNRGYNTLAVFAVTADGHLTLI----------QQI  281 (347)
T ss_dssp             -----EEEEEEEES-----SCTTCCSCCEEEEEEECTT-SCEEEEEEETTTEEEEEEECGGGCEEEE----------EEE
T ss_pred             -----eEEeeeeee-----cCCCCCCCCcceeEEECCC-CCEEEEEeCCCCEEEEEEECCCCcEEEe----------EEE
Confidence                 000000000     0000011235789999999 6655 56667899999998732111110          000


Q ss_pred             cccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECC
Q 004745          237 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVN  278 (732)
Q Consensus       237 ~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~  278 (732)
                             ..+.. .+..++|+|+|++|++++. ++.|.+|++.
T Consensus       282 -------~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          282 -------STEGD-FPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             -------ECSSS-CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             -------ecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence                   11111 3678999999999988876 4899999554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.65  E-value=7.7e-14  Score=144.44  Aligned_cols=175  Identities=6%  Similarity=-0.033  Sum_probs=114.0

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeeEEEEccC-----CCcCeEEEEEe
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG-----HSANVFCTKFV   71 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~i~vWd~~~~~~~~~~~~~-----h~~~V~~~~~s   71 (732)
                      .+.+++..+..+..+  .++|+|||++|+++.          .+++|.+||+.+++.+.++...     +......++|+
T Consensus        39 ~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~s  116 (361)
T 2oiz_A           39 TNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQT  116 (361)
T ss_dssp             TTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEEC
T ss_pred             CCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEEC
Confidence            345666777766666  899999999999886          2678999999999988877322     23456789999


Q ss_pred             cCCCCCEEEEEEC--CCcEEEEEcCCCCCCCCCCCCCCCcee-eccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004745           72 PETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  148 (732)
Q Consensus        72 ~~~~g~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  148 (732)
                      |+  |++|+++..  ++.|.+||+.+.+          .+.. +. +. ....+.+.|++...+++.+.||.+.+|++..
T Consensus       117 pd--g~~l~v~n~~~~~~v~v~d~~~~~----------~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~  182 (361)
T 2oiz_A          117 TD--GKFIVLQNASPATSIGIVDVAKGD----------YVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGE  182 (361)
T ss_dssp             TT--SSEEEEEEESSSEEEEEEETTTTE----------EEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred             CC--CCEEEEECCCCCCeEEEEECCCCc----------EEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence            99  588888764  6899999998642          1333 22 22 2233567787767888999999999999865


Q ss_pred             CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004745          149 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  217 (732)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~  217 (732)
                      .....          .. ..  .   ..+...  ...++ .+.++++ +..++..+.++.|.++|+...
T Consensus       183 ~g~~~----------~~-~~--~---~~~~~~--~~~~~-~~~~~~~-g~~~~~~~~~~~v~v~d~~~~  231 (361)
T 2oiz_A          183 DGKVA----------SQ-SR--S---KQMFSV--KDDPI-FIAPALD-KDKAHFVSYYGNVYSADFSGD  231 (361)
T ss_dssp             TSSEE----------EE-EE--C---CCCSCT--TTSCB-CSCCEEC-SSEEEEEBTTSEEEEEECSSS
T ss_pred             CCcEe----------ee-cc--c---cceEcC--CCCce-EEEeccc-CCEEEEEeCCCeEEEEEecCC
Confidence            22110          00 00  0   000000  00011 2223455 456666778899999998754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.65  E-value=4.9e-15  Score=153.14  Aligned_cols=235  Identities=10%  Similarity=0.043  Sum_probs=153.3

Q ss_pred             hccccEeeeccC-CceeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCC-----CcCeEEEEEecCCCCCEEE
Q 004745            8 RLSQERELEGHQ-GCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGH-----SANVFCTKFVPETSDELVV   80 (732)
Q Consensus         8 ~~~~~~~l~~h~-~~V~~l~~s~dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h-----~~~V~~~~~s~~~~g~~l~   80 (732)
                      +.+.++.+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+...+     ...+.+++|+|+  |++|+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spd--g~~l~  107 (349)
T 1jmx_B           30 SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD--GKEVY  107 (349)
T ss_dssp             TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTT--SSEEE
T ss_pred             CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCC--CCEEE
Confidence            445556665443 2678999999998655 55578999999999999887773333     334789999999  58888


Q ss_pred             EEECC------------CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004745           81 SGAGD------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  148 (732)
Q Consensus        81 s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  148 (732)
                      +++.+            +.|.+||+.++...       ..+..+. +...+.+++|+|++ +++ .++  +.|.+||+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------~~~~~~~-~~~~~~~~~~s~dg-~l~-~~~--~~i~~~d~~~  175 (349)
T 1jmx_B          108 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-------KPVRTFP-MPRQVYLMRAADDG-SLY-VAG--PDIYKMDVKT  175 (349)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEEGGGGGGB-------CCSEEEE-CCSSCCCEEECTTS-CEE-EES--SSEEEECTTT
T ss_pred             EEcccccccccccccCCCeEEEEECCCcccc-------ceeeecc-CCCcccceeECCCC-cEE-Ecc--CcEEEEeCCC
Confidence            88765            89999999863211       1123333 34468899999976 544 444  3499999988


Q ss_pred             CCCCCCCCCCCc-----------------cc---------------------------ceEEeeccCCccccccCCCCCc
Q 004745          149 GSSCPPAGSSHQ-----------------EC---------------------------RNILLDLRCGAKRSLADPPKQT  184 (732)
Q Consensus       149 ~~~~~~~~~~~~-----------------~~---------------------------~~~~~~~~~~~~~~~~~~~~~~  184 (732)
                      ++..........                 ..                           ....++..++....+.. ....
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  254 (349)
T 1jmx_B          176 GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF-ADLT  254 (349)
T ss_dssp             CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE-EECS
T ss_pred             CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc-ccCC
Confidence            764321111100                 00                           00001222221111110 1122


Q ss_pred             cceEEEEecC-CCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEE
Q 004745          185 LSLKSCDISS-TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV  263 (732)
Q Consensus       185 ~~v~~i~~~~-~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l  263 (732)
                      ..+.+++|+| + +++++++  ++.|++||+.+++.+..+.                   .++   .+.+++|+|+|++|
T Consensus       255 ~~~~~~~~sp~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~-------------------~~~---~~~~~~~s~dg~~l  309 (349)
T 1jmx_B          255 ELYFTGLRSPKD-PNQIYGV--LNRLAKYDLKQRKLIKAAN-------------------LDH---TYYCVAFDKKGDKL  309 (349)
T ss_dssp             SCEEEEEECSSC-TTEEEEE--ESEEEEEETTTTEEEEEEE-------------------CSS---CCCEEEECSSSSCE
T ss_pred             CcceeeEecCCC-CCEEEEE--cCeEEEEECccCeEEEEEc-------------------CCC---CccceEECCCCCEE
Confidence            3567889999 8 7788877  8899999998875443321                   111   36689999999999


Q ss_pred             EEEecCCeEEEEECCCCCC
Q 004745          264 LLSYSGEHVYLMDVNHAGG  282 (732)
Q Consensus       264 ~~~~~dg~v~iwd~~~~~~  282 (732)
                      ++++.++.|++||+.+++.
T Consensus       310 ~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          310 YLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             EEESBSSEEEEEETTTTEE
T ss_pred             EEecCCCeEEEEeccccce
Confidence            9988899999999988653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.62  E-value=7.2e-14  Score=144.69  Aligned_cols=191  Identities=8%  Similarity=0.068  Sum_probs=122.1

Q ss_pred             CCCEEEEEe------CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE----------CCCcEEEEEc
Q 004745           30 KGSLLISGS------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL   93 (732)
Q Consensus        30 dg~~lasg~------~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~----------~dg~i~vwd~   93 (732)
                      +++++.+..      .|+.|.+||..+++.+.++ ..+..+  .++|+|+  |+++++++          .++.|.+||+
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-~~g~~p--~i~~spd--g~~lyv~~~~~~~~~~g~~~~~v~v~d~   88 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-PTAFNG--HVQVSND--GKKIYTMTTYHERITRGKRSDVVEVWDA   88 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-ECCEEE--EEEECTT--SSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe-cCCCCC--ceEECCC--CCEEEEEEecccccccCCCCCEEEEEEC
Confidence            566666553      3779999999999998888 455554  8999999  58888876          3678999998


Q ss_pred             CCCCCCCCCCCCCCCceeecc------ccCceeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           94 SRFSGRGLDDNAITPSALYQC------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~p~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      .+.+          .+..+..      +......++++|++ ++|+++..  ++.|.+||+.+++..             
T Consensus        89 ~t~~----------~~~~i~~~~~~~~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~~~~~~~-------------  144 (361)
T 2oiz_A           89 DKLT----------FEKEISLPPKRVQGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDVAKGDYV-------------  144 (361)
T ss_dssp             TTCC----------EEEEEEECTTBCCBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEETTTTEEE-------------
T ss_pred             cCCc----------EEEEEEcCccccccCCCcceEEECCCC-CEEEEECCCCCCeEEEEECCCCcEE-------------
Confidence            8632          1333321      23456789999966 66666653  678999999887521             


Q ss_pred             Eee-ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCcccccccccccc
Q 004745          166 LLD-LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       166 ~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                       .. +..             .....+.+.|++...+++.+.||.+.+|++.. ++.......       ...+       
T Consensus       145 -~~~i~~-------------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~-------~~~~-------  196 (361)
T 2oiz_A          145 -EDVTAA-------------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS-------KQMF-------  196 (361)
T ss_dssp             -EEEGGG-------------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC-------CCCS-------
T ss_pred             -EEEecC-------------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc-------cceE-------
Confidence             00 000             01223556777567888899999999999865 221100000       0000       


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ..... ++ .+.++|++..++..+.++.|+++|+..
T Consensus       197 ~~~~~-~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~  230 (361)
T 2oiz_A          197 SVKDD-PI-FIAPALDKDKAHFVSYYGNVYSADFSG  230 (361)
T ss_dssp             CTTTS-CB-CSCCEECSSEEEEEBTTSEEEEEECSS
T ss_pred             cCCCC-ce-EEEecccCCEEEEEeCCCeEEEEEecC
Confidence            00000 11 233467777788788889999999875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.58  E-value=5e-14  Score=146.60  Aligned_cols=262  Identities=9%  Similarity=0.061  Sum_probs=159.1

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeeEEEEccCCCcCeEEEEEecCCCCCE--EEEEE-----------
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDEL--VVSGA-----------   83 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~-~~~~~~~~~~~h~~~V~~~~~s~~~~g~~--l~s~~-----------   83 (732)
                      ....+..++|+|||++|++++.+ .|.+|++. +++..........+.+.+++|+|+  |++  ++++.           
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN--TRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC--CCEEEEEEecCCcceecccee
Confidence            34578899999999999998887 99999997 777654331111123567899999  473  44543           


Q ss_pred             --CCCcEEEEEcCCCCCCCCCCCCCCCceeec----cccCceeEEEEecCCCcEEEEEe-CCCcEEEEECC-CCCCCCCC
Q 004745           84 --GDAEVRLFNLSRFSGRGLDDNAITPSALYQ----CHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFR-QGSSCPPA  155 (732)
Q Consensus        84 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~-~~~~~~~~  155 (732)
                        .++.+.+|++... +..        ...+.    .+...+.+++|+|++ ++++++. .++.|++||+. +++..   
T Consensus       115 ~~~~g~v~v~~~~~~-g~~--------~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~---  181 (365)
T 1jof_A          115 YKFAGYGNVFSVSET-GKL--------EKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVE---  181 (365)
T ss_dssp             SSSCCEEEEEEECTT-CCE--------EEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEE---
T ss_pred             ecCCceEEEEccCCC-CcC--------cceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEE---
Confidence              6899999999742 111        11222    245679999999966 6666554 46799999997 44310   


Q ss_pred             CCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC-CCeEEEEECCC--CCCCcccccCCCCCCc
Q 004745          156 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRM--LPPLTSCQKRMSPPPC  232 (732)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-dg~v~iwd~~~--~~~~~~~~~~~~~~~~  232 (732)
                               .+..        +. .+.+...+..++|+|+ +++|++++. ++.|.+|++..  ++.......       
T Consensus       182 ---------~~~~--------~~-~~~~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~-------  235 (365)
T 1jof_A          182 ---------LVGS--------VD-APDPGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPVYTHHS-------  235 (365)
T ss_dssp             ---------EEEE--------EE-CSSTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-------
T ss_pred             ---------Eeee--------Ee-cCCCCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEccce-------
Confidence                     0000        00 0011235789999999 777777664 78999998753  321100000       


Q ss_pred             cccccccccccCCCcc-----ccEEEEE-EcCCCCEEEEEecC-C-----eEEEEECCCCCCcceeeecCCCCceeeecc
Q 004745          233 VNYFCPMHLSEHGRSS-----LHLTHVT-FSPNGEEVLLSYSG-E-----HVYLMDVNHAGGRAMRYTVGDASKIMSFTP  300 (732)
Q Consensus       233 ~~~~~~~~~~~~~~~~-----~~i~~l~-~sp~g~~l~~~~~d-g-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  300 (732)
                      +... +...  .++..     ..+..++ |+|+|++|+++..+ +     .|.+|++...+......         ... 
T Consensus       236 ~~~~-~~~~--~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~---------~~~-  302 (365)
T 1jof_A          236 FPLI-PPGI--PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL---------FLS-  302 (365)
T ss_dssp             EESS-CTTC--CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE---------EEE-
T ss_pred             EEcC-CCCc--CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee---------eee-
Confidence            0000 0000  11110     0378899 99999999887653 3     89999996322111100         000 


Q ss_pred             CCCCccCCCCCCccCC---CccccccccccCc-chhhHHHHHHHhhhh
Q 004745          301 TLNGLELQPPIHDFLQ---TNIRVRGEVATGL-GKCRMLVEIARNSLE  344 (732)
Q Consensus       301 ~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~-d~~~~l~~~~~~~~~  344 (732)
                        ..+...+..++|+|   ||++++   .+.. ++.+.+     |.++
T Consensus       303 --~~~~~~~~~~a~sp~~~dg~~l~---v~~~~~~~v~v-----~~~~  340 (365)
T 1jof_A          303 --PTPTSGGHSNAVSPCPWSDEWMA---ITDDQEGWLEI-----YRWK  340 (365)
T ss_dssp             --ECSSCCTTCCCEEECTTCTTEEE---EECSSSCEEEE-----EEEE
T ss_pred             --ecCCCCcccceecCCCcCCCEEE---EEEcCCCeEEE-----EEEc
Confidence              01122455678888   899887   6654 477777     7665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.56  E-value=1.8e-13  Score=140.10  Aligned_cols=255  Identities=13%  Similarity=0.047  Sum_probs=170.3

Q ss_pred             CCceeEEEEcCCCCEEEEEeCC------------------------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDD------------------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPET   74 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~d------------------------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~   74 (732)
                      -+.+.+++++|+|+++++...+                        ++|.+||..+++.+..+..++-.....++++|+ 
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~-  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD-  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT-
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC-
Confidence            4679999999999999988777                        479999999999887774455568899999998 


Q ss_pred             CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceee---------ccccCceeEEEEecCCCcEEEEEe-CCCcEEEE
Q 004745           75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---------QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQH  144 (732)
Q Consensus        75 ~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vw  144 (732)
                       |+++++...++.|++||.....         ..+..+         .++......|+++|++++++++.+ .++.|++|
T Consensus       102 -g~l~v~d~~~~~v~~~~~~g~~---------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~  171 (329)
T 3fvz_A          102 -GNYWVTDVALHQVFKLDPHSKE---------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF  171 (329)
T ss_dssp             -SCEEEEETTTTEEEEECTTCSS---------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEE
T ss_pred             -CCEEEEECCCCEEEEEeCCCCe---------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEE
Confidence             5888888889999999986421         013333         344557899999995558888886 68999999


Q ss_pred             ECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccc
Q 004745          145 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  224 (732)
Q Consensus       145 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~  224 (732)
                      |. +++..            ..+... +..  -...+.+......++++|+++.++++...++.|++||..+++.+..+.
T Consensus       172 ~~-~g~~~------------~~~~~~-g~~--~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          172 SP-SGKFV------------TQWGEE-SSG--SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             CT-TSCEE------------EEECEE-CCS--SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             cC-CCCEE------------EEeccC-CCC--CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            94 33311            001000 000  000012233578999999867778888889999999998765544331


Q ss_pred             cCCCCCCccccccccccccCCCccccEEEEEEcC------CCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeee
Q 004745          225 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP------NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF  298 (732)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp------~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  298 (732)
                      .                  ..+. ..+..++|+|      +|+..++...+..|++|++.+++....+.           
T Consensus       236 ~------------------~~~~-~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~-----------  285 (329)
T 3fvz_A          236 H------------------ASFG-RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK-----------  285 (329)
T ss_dssp             C------------------TTTT-TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC-----------
T ss_pred             c------------------cccC-CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc-----------
Confidence            1                  1111 2478899999      33322223334589999998865332211           


Q ss_pred             ccCCCCccCCCCCCccCCCccccccccccCcchhhHH
Q 004745          299 TPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRML  335 (732)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l  335 (732)
                        ...++...+..++++|+|..++   +...++.+..
T Consensus       286 --~~~~~~~~p~~ia~~~dG~lyv---ad~~~~~I~~  317 (329)
T 3fvz_A          286 --PVRKHFDMPHDIVASEDGTVYI---GDAHTNTVWK  317 (329)
T ss_dssp             --CSSSCCSSEEEEEECTTSEEEE---EESSSCCEEE
T ss_pred             --CCCCccCCeeEEEECCCCCEEE---EECCCCEEEE
Confidence              0122334466788899997776   6666776666

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.56  E-value=2.3e-13  Score=153.85  Aligned_cols=162  Identities=12%  Similarity=0.017  Sum_probs=103.2

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEE--ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCcee---------EEEEe--
Q 004745           59 TGHSANVFCTKFVPETSDELVVSG--AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK---------KLAVE--  125 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~l~~~--  125 (732)
                      .+|...+..++|+++  +-++++.  +.++...||..... +.         ...+..|...+.         ...|+  
T Consensus        20 ~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~l~~~~~~-~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~~S   87 (662)
T 3azo_A           20 ASRSGRPACVGAVGD--EVWWVAPRPAEAGRATLVRRRAD-GA---------EESALPAPWNVRNRVFEYSGFPWAGVPR   87 (662)
T ss_dssp             HHTCSCCEEEEEETT--EEEEEEEETTTTTEEEEEEECTT-SC---------EEESSCTTCCBCCCGGGTCCCCEEEECC
T ss_pred             hhcCCccceeEEcCC--eEEEEecCcccCCcEEEEEECCC-CC---------cceeCCCCccccccccccCCccceeeee
Confidence            468889999999987  3555665  45788999996321 21         344445555544         56566  


Q ss_pred             cCCCcEEEEEe-CCCcEEEEECC--C-CCCCCCCCCCCcccceEEeeccCCccccccCCC--CCccceEEEEecCCCCCE
Q 004745          126 VGNPHVVWSAS-EDGTLRQHDFR--Q-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPP--KQTLSLKSCDISSTRPHL  199 (732)
Q Consensus       126 p~~~~~l~s~s-~dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~  199 (732)
                      |++..+|+..+ .+..|.+|++.  . ++..                       .+....  .+...+.+++|+|+ ++.
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~-----------------------~l~~~~~~~~~~~~~~~~~spD-g~~  143 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR-----------------------PLTPVSAVGGGLRWADPVLLPE-RGE  143 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCE-----------------------ECSCCCCSTTCEEEEEEEEETT-TTE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCE-----------------------eccCCccCCCCccccCcEECCC-CCE
Confidence            87644154444 35667777765  2 3210                       111110  13457889999999 788


Q ss_pred             EEEEeCC----------CeEEEEECCC------CCCCcccccCCCCCCccccccccccccC-CCccccEEEEEEcCCCCE
Q 004745          200 LLVGGSD----------AFARLYDRRM------LPPLTSCQKRMSPPPCVNYFCPMHLSEH-GRSSLHLTHVTFSPNGEE  262 (732)
Q Consensus       200 l~tg~~d----------g~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~  262 (732)
                      |++++.+          ..|++||+.+      ++. ..+                    . .+.. .+..++|+|||++
T Consensus       144 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l--------------------~~~~~~-~~~~~~~SpDG~~  201 (662)
T 3azo_A          144 VWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-REL--------------------SDDAHR-FVTGPRLSPDGRQ  201 (662)
T ss_dssp             EEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EES--------------------SCSCSS-EECCCEECTTSSE
T ss_pred             EEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEE--------------------EecCCC-cccCceECCCCCE
Confidence            8888776          5899999987      321 111                    1 1222 4778899999999


Q ss_pred             EEEEecCC--------eEEEEECC
Q 004745          263 VLLSYSGE--------HVYLMDVN  278 (732)
Q Consensus       263 l~~~~~dg--------~v~iwd~~  278 (732)
                      |+.++.++        .|++||+.
T Consensus       202 la~~~~~~~~~~~~~~~i~~~d~~  225 (662)
T 3azo_A          202 AVWLAWDHPRMPWEGTELKTARVT  225 (662)
T ss_dssp             EEEEEECTTCCTTTCEEEEEEEEC
T ss_pred             EEEEECCCCCCCCCCcEEEEEEEC
Confidence            99887553        68888877

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.55  E-value=2.9e-14  Score=163.01  Aligned_cols=163  Identities=11%  Similarity=0.107  Sum_probs=105.9

Q ss_pred             cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccC-----ceeEEEEecCCCcEEEEEeC
Q 004745           63 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR-----RVKKLAVEVGNPHVVWSASE  137 (732)
Q Consensus        63 ~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~p~~~~~l~s~s~  137 (732)
                      ....++.|+|+  |++++++  |++|++||+.++..          ...+.+|..     ....+.|+|++ ++|+.++.
T Consensus        17 ~~~~~~~w~~d--g~~~~~~--~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~   81 (740)
T 4a5s_A           17 LKLYSLRWISD--HEYLYKQ--ENNILVFNAEYGNS----------SVFLENSTFDEFGHSINDYSISPDG-QFILLEYN   81 (740)
T ss_dssp             CCCCCEEECSS--SEEEEEE--TTEEEEEETTTCCE----------EEEECTTTTTTCCSCCCEEEECTTS-SEEEEEEE
T ss_pred             ccccccEECCC--CcEEEEc--CCcEEEEECCCCce----------EEEEechhhhhhcccccceEECCCC-CEEEEEEC
Confidence            34668999999  5788876  99999999987542          333444442     23458899965 77777776


Q ss_pred             C---------CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCe
Q 004745          138 D---------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF  208 (732)
Q Consensus       138 d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~  208 (732)
                      +         +.+.+||+.+++..                          ....+...+...+|+|| |+.||.+. ++.
T Consensus        82 ~~~~~r~~~~~~~~~~d~~~~~~~--------------------------~l~~~~~~~~~~~~SPd-G~~la~~~-~~~  133 (740)
T 4a5s_A           82 YVKQWRHSYTASYDIYDLNKRQLI--------------------------TEERIPNNTQWVTWSPV-GHKLAYVW-NND  133 (740)
T ss_dssp             EEECSSSCEEEEEEEEETTTTEEC--------------------------CSSCCCTTEEEEEECSS-TTCEEEEE-TTE
T ss_pred             CeeeEEEccceEEEEEECCCCcEE--------------------------EcccCCCcceeeEECCC-CCEEEEEE-CCe
Confidence            5         55679999887521                          11223446889999999 77888774 789


Q ss_pred             EEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc--------ccEEEEEEcCCCCEEEEEecC-CeEEEEECCC
Q 004745          209 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS--------LHLTHVTFSPNGEEVLLSYSG-EHVYLMDVNH  279 (732)
Q Consensus       209 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~l~~sp~g~~l~~~~~d-g~v~iwd~~~  279 (732)
                      |++||+.+++... +....   .....+       .++..        .....+.|||||++|+.++.| +.|.+|++..
T Consensus       134 i~~~~~~~~~~~~-lt~~g---~~~~~~-------~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~  202 (740)
T 4a5s_A          134 IYVKIEPNLPSYR-ITWTG---KEDIIY-------NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF  202 (740)
T ss_dssp             EEEESSTTSCCEE-CCSCC---BTTTEE-------ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE
T ss_pred             EEEEECCCCceEE-EcCCC---Ccccee-------cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEe
Confidence            9999998765322 11000   000000       01100        012358999999999988765 4588887654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.55  E-value=2.8e-12  Score=128.36  Aligned_cols=161  Identities=7%  Similarity=0.090  Sum_probs=107.9

Q ss_pred             CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceee------ccccCceeEEEEecCCCcEEE
Q 004745           60 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY------QCHTRRVKKLAVEVGNPHVVW  133 (732)
Q Consensus        60 ~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~l~~~p~~~~~l~  133 (732)
                      ++-..+.+++++++  |.++++...++.|.+||....           .+..+      .++...+..+++.+.++++++
T Consensus        27 g~~~~p~~v~~~~~--g~l~v~~~~~~~i~~~d~~g~-----------~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v   93 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQ--NDIIVADTNNHRIQIFDKEGR-----------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIV   93 (286)
T ss_dssp             TCBSCEEEEEECTT--CCEEEEEGGGTEEEEECTTSC-----------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEE
T ss_pred             CccCCCceEEECCC--CCEEEEECCCCEEEEECCCCc-----------EEEEecccCCCcccccCceEEEEEcCCCeEEE
Confidence            45567899999998  588888888999999997631           12222      234567889999543556666


Q ss_pred             EEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004745          134 SASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  212 (732)
Q Consensus       134 s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw  212 (732)
                      +... ++.|.+||. +++..              ..+.          ......+.+++++|+ ++++++...++.|++|
T Consensus        94 ~~~~~~~~i~~~d~-~g~~~--------------~~~~----------~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~  147 (286)
T 1q7f_A           94 TERSPTHQIQIYNQ-YGQFV--------------RKFG----------ATILQHPRGVTVDNK-GRIIVVECKVMRVIIF  147 (286)
T ss_dssp             EECGGGCEEEEECT-TSCEE--------------EEEC----------TTTCSCEEEEEECTT-SCEEEEETTTTEEEEE
T ss_pred             EcCCCCCEEEEECC-CCcEE--------------EEec----------CccCCCceEEEEeCC-CCEEEEECCCCEEEEE
Confidence            6543 789999993 44311              0000          012235789999998 6788887788999999


Q ss_pred             ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      |... +.+..+..                  .++.. .+..++++|+|+++++...++.|++||...
T Consensus       148 ~~~g-~~~~~~~~------------------~~~~~-~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g  194 (286)
T 1q7f_A          148 DQNG-NVLHKFGC------------------SKHLE-FPNGVVVNDKQEIFISDNRAHCVKVFNYEG  194 (286)
T ss_dssp             CTTS-CEEEEEEC------------------TTTCS-SEEEEEECSSSEEEEEEGGGTEEEEEETTC
T ss_pred             cCCC-CEEEEeCC------------------CCccC-CcEEEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            9653 22211100                  01112 488999999999777777789999998643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.53  E-value=3.3e-12  Score=138.97  Aligned_cols=205  Identities=10%  Similarity=0.042  Sum_probs=136.7

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCC
Q 004745           29 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP  108 (732)
Q Consensus        29 ~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  108 (732)
                      |.+.++++...+++|.++|..+++.+.++.  ....+..+.|+|+  |+++++++.|+.|.+||+.....        ..
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~--~g~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~--------~~  232 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD--TGYAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEP--------TT  232 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSC--------CE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEe--CCCCccceEECCC--CCEEEEEcCCCeEEEEECCCCCC--------cE
Confidence            444567777889999999999999999884  3345779999999  58999999999999999952112        12


Q ss_pred             ceeeccccCceeEEEEe----cCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC-
Q 004745          109 SALYQCHTRRVKKLAVE----VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-  183 (732)
Q Consensus       109 ~~~~~~h~~~v~~l~~~----p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  183 (732)
                      +..+.. ......++|+    |++..++++...++.|.++|..+.+.+.            .+.+  +.. .......| 
T Consensus       233 v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~------------~i~~--~~~-~~~~~~~~p  296 (567)
T 1qks_A          233 VAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK------------IQST--RGM-TYDEQEYHP  296 (567)
T ss_dssp             EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE------------EEEC--CEE-CTTTCCEES
T ss_pred             eEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE------------EEec--ccc-ccccccccC
Confidence            444443 3346799999    6664455555567999999988766321            0110  000 00000001 


Q ss_pred             ccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEE
Q 004745          184 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV  263 (732)
Q Consensus       184 ~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l  263 (732)
                      ...+..+.+++++..+++....+|.|.++|....+.+...           ..         ..+.....+.|+|+|+++
T Consensus       297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~-----------~i---------~~~~~~~d~~~~pdgr~~  356 (567)
T 1qks_A          297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT-----------EI---------SAERFLHDGGLDGSHRYF  356 (567)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE-----------EE---------ECCSSEEEEEECTTSCEE
T ss_pred             CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceee-----------ee---------eccccccCceECCCCCEE
Confidence            1156778888886666666667799999998764321110           00         001136788999999998


Q ss_pred             EEEec-CCeEEEEECCCCC
Q 004745          264 LLSYS-GEHVYLMDVNHAG  281 (732)
Q Consensus       264 ~~~~~-dg~v~iwd~~~~~  281 (732)
                      +++.. ++.|.++|+.+++
T Consensus       357 ~va~~~sn~V~ViD~~t~k  375 (567)
T 1qks_A          357 ITAANARNKLVVIDTKEGK  375 (567)
T ss_dssp             EEEEGGGTEEEEEETTTTE
T ss_pred             EEEeCCCCeEEEEECCCCc
Confidence            87764 7899999999853

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.51  E-value=2.5e-12  Score=131.53  Aligned_cols=179  Identities=8%  Similarity=0.024  Sum_probs=112.6

Q ss_pred             CcCeEEEEEecCCCCCEEEEEECC------------------------CcEEEEEcCCCCCCCCCCCCCCCceeec-ccc
Q 004745           62 SANVFCTKFVPETSDELVVSGAGD------------------------AEVRLFNLSRFSGRGLDDNAITPSALYQ-CHT  116 (732)
Q Consensus        62 ~~~V~~~~~s~~~~g~~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~-~h~  116 (732)
                      -+.+.+++++|+  |+++++...+                        ++|.+||..++..          +..+. ++.
T Consensus        23 l~~v~~va~d~~--G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~----------~~~~~~~~~   90 (329)
T 3fvz_A           23 PGQVSGVALDSK--NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI----------LQSSGKNLF   90 (329)
T ss_dssp             CSCEEEEEECTT--CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------EEEECTTTC
T ss_pred             cCCceEEEECCC--CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------EeccCCCcc
Confidence            356899999998  5888887777                        4799999875321          22222 344


Q ss_pred             CceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC
Q 004745          117 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  196 (732)
Q Consensus       117 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  196 (732)
                      ..+..++++|++ +++++...++.|++||........             ..+....  .......+......++++|++
T Consensus        91 ~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~-------------~~~~~~~--~~g~~~~~~~~P~~ia~~~~~  154 (329)
T 3fvz_A           91 YLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPL-------------LILGRSM--QPGSDQNHFCQPTDVAVEPST  154 (329)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSCCS-------------EEESBTT--BCCCSTTCCSSEEEEEECTTT
T ss_pred             CCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeEEE-------------EEecccC--CCCCCccccCCCcEEEEeCCC
Confidence            578999999955 788888888999999975442110             0000000  000011233467899999944


Q ss_pred             CCEEEEEe-CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC-CCEEEEEecCCeEEE
Q 004745          197 PHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYL  274 (732)
Q Consensus       197 ~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~-g~~l~~~~~dg~v~i  274 (732)
                      +.++++.+ .++.|++||. +++.+..+.......          ....++.. ....++++|+ +.++++...++.|++
T Consensus       155 g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~----------~~~~~~~~-~p~gia~d~~~g~l~v~d~~~~~I~~  222 (329)
T 3fvz_A          155 GAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGS----------SPRPGQFS-VPHSLALVPHLDQLCVADRENGRIQC  222 (329)
T ss_dssp             CCEEEEECSSCCEEEEECT-TSCEEEEECEECCSS----------SCCTTEES-CEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCC----------CCCCcccC-CCcEEEEECCCCEEEEEECCCCEEEE
Confidence            88888886 6899999994 343332221100000          00001111 3789999998 666666677899999


Q ss_pred             EECCCC
Q 004745          275 MDVNHA  280 (732)
Q Consensus       275 wd~~~~  280 (732)
                      |+..++
T Consensus       223 ~~~~~G  228 (329)
T 3fvz_A          223 FKTDTK  228 (329)
T ss_dssp             EETTTC
T ss_pred             EECCCC
Confidence            998863

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.51  E-value=3.1e-12  Score=131.16  Aligned_cols=198  Identities=6%  Similarity=0.021  Sum_probs=134.2

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      ...|.+++|++++..++..+.++.++.|   .++....+ ..+...+.+++|+|+  |++++++..++.|.+||..++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~--g~l~~~~~~~~~i~~~d~~~~~~   78 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEI-SKKGLQLEGLNFDRQ--GQLFLLDVFEGNIFKINPETKEI   78 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEE-ESSCCCEEEEEECTT--SCEEEEETTTCEEEEECTTTCCE
T ss_pred             ccccceeeecCCccceeEEeecccCccc---ccceeEEE-eccCccccCcEECCC--CCEEEEECCCCEEEEEeCCCCcE
Confidence            3457888999998888877888999999   35555566 466677899999998  57777888899999999875321


Q ss_pred             CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC----CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745           99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus        99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                                ......+...+.+++++|++ +++++...+    +.|.+||..++...            .+..      
T Consensus        79 ----------~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~------------~~~~------  129 (333)
T 2dg1_A           79 ----------KRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQ------------DIIE------  129 (333)
T ss_dssp             ----------EEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCE------------EEEC------
T ss_pred             ----------EEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEE------------EEEc------
Confidence                      12222456789999999965 777776665    68999998766421            0000      


Q ss_pred             ccccCCCCCccceEEEEecCCCCCEEEEEeC------CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                           .......+.++.++|+ ++++++...      .+.|..+|..+.+.. .+                    .....
T Consensus       130 -----~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~--------------------~~~~~  182 (333)
T 2dg1_A          130 -----DLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PI--------------------IQNIS  182 (333)
T ss_dssp             -----SSSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTSCCEE-EE--------------------EEEES
T ss_pred             -----cCccCCcccceEECCC-CCEEEEeccccccCCCceEEEEeCCCCEEE-Ee--------------------ecCCC
Confidence                 0012236889999998 677766553      245666665543211 10                    00111


Q ss_pred             ccEEEEEEcCCCCEEEEE-ecCCeEEEEECCC
Q 004745          249 LHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH  279 (732)
Q Consensus       249 ~~i~~l~~sp~g~~l~~~-~~dg~v~iwd~~~  279 (732)
                       .+..++|+|+|++|+.+ +.++.|++|++.+
T Consensus       183 -~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          183 -VANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             -SEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             -cccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence             37889999999876555 4578999999864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.50  E-value=1.9e-12  Score=133.50  Aligned_cols=71  Identities=8%  Similarity=0.019  Sum_probs=54.1

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcE-EEEcCCCCCCccccCCCCCC
Q 004745          604 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTI-KIWTPSASVPSIVSGGAAGP  682 (732)
Q Consensus       604 ~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i-~vW~~~~~~~~~~~~gh~~~  682 (732)
                      |+ || ++++++.|+.++|| +.+|+.. .+..+...|.+++|+|  .++++++.+++. +||.+. ++ ...+.+|+..
T Consensus       271 ~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~  342 (347)
T 2gop_A          271 KD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP  342 (347)
T ss_dssp             ET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred             Ec-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence            58 88 99999999999999 8877764 4555688999999999  677777777765 888776 43 4445555543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.46  E-value=7.5e-12  Score=131.26  Aligned_cols=251  Identities=8%  Similarity=-0.031  Sum_probs=151.6

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEE--ecCCCCCEEEEE---
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF--VPETSDELVVSG---   82 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~--s~~~~g~~l~s~---   82 (732)
                      +.+..+...+|...+..++|+|||+.|+.++.++.|++||+.+++....+ ..+...+....|  +|+  +.+++..   
T Consensus        69 ~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~d--g~~l~~~~~~  145 (388)
T 3pe7_A           69 TQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSD--CTKLVGIEIR  145 (388)
T ss_dssp             TCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTT--SSEEEEEEEE
T ss_pred             CCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCC--CCeecccccc
Confidence            34444555566666667899999999999999999999999999877655 455555544444  677  5777643   


Q ss_pred             -------------------ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEec-CCCcEEEEEeCC----
Q 004745           83 -------------------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASED----  138 (732)
Q Consensus        83 -------------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s~d----  138 (732)
                                         ..+..|.+||+.++.           ...+..+...+..+.|+| ++ +.|+.++.+    
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-----------~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~  213 (388)
T 3pe7_A          146 REDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-----------STVILQENQWLGHPIYRPYDD-STVAFCHEGPHDL  213 (388)
T ss_dssp             GGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEE-EEEEEEECSCTTT
T ss_pred             CcccccccccchhhhhhccCCcceEEEEECCCCc-----------eEEeecCCccccccEECCCCC-CEEEEEEecCCCC
Confidence                               234679999998643           344555677899999999 76 666665543    


Q ss_pred             --CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEE-EeCCC----eEEE
Q 004745          139 --GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDA----FARL  211 (732)
Q Consensus       139 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t-g~~dg----~v~i  211 (732)
                        ..|.++|+...+..                       .+.. ......+....|+|+ ++.|+. +..++    .|++
T Consensus       214 ~~~~l~~~d~~~~~~~-----------------------~l~~-~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~l~~  268 (388)
T 3pe7_A          214 VDARMWLINEDGTNMR-----------------------KVKT-HAEGESCTHEFWVPD-GSALVYVSYLKGSPDRFIYS  268 (388)
T ss_dssp             SSCSEEEEETTSCCCE-----------------------ESCC-CCTTEEEEEEEECTT-SSCEEEEEEETTCCCEEEEE
T ss_pred             CcceEEEEeCCCCceE-----------------------Eeee-CCCCcccccceECCC-CCEEEEEecCCCCCcceEEE
Confidence              36777777654311                       1111 011125678899999 555544 33222    3999


Q ss_pred             EECCCCCCCcccccCCCCCCccccccccccccCCCcc--ccEEEEEEcCCCCEEEEE---------ecCCeEEEEECCCC
Q 004745          212 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS--LHLTHVTFSPNGEEVLLS---------YSGEHVYLMDVNHA  280 (732)
Q Consensus       212 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~l~~sp~g~~l~~~---------~~dg~v~iwd~~~~  280 (732)
                      ||+.+++.....           .+       .++..  .....++|+|+|+.|+..         ..+..|++||+.++
T Consensus       269 ~d~~~g~~~~l~-----------~~-------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~  330 (388)
T 3pe7_A          269 ADPETLENRQLT-----------SM-------PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG  330 (388)
T ss_dssp             ECTTTCCEEEEE-----------EE-------CCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred             EecCCCceEEEE-----------cC-------CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence            999887531100           00       01000  001123799999988764         44679999999885


Q ss_pred             CCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004745          281 GGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (732)
                      +.. .+..+......     ........+...+|+|||+.++
T Consensus       331 ~~~-~l~~~~~~~~~-----~~~~~~~~~~~~~~spDg~~l~  366 (388)
T 3pe7_A          331 TQH-RVARHDTSWKV-----FEGDRQVTHPHPSFTPDDKQIL  366 (388)
T ss_dssp             EEE-EEEECCCCCCC-----BTTBSSTTCCCCEECTTSSEEE
T ss_pred             ceE-EeccccCcccc-----cccccccCCCCccCCCCCCEEE
Confidence            432 22221110000     0011112356778999999887

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.45  E-value=1.7e-11  Score=139.53  Aligned_cols=68  Identities=12%  Similarity=-0.025  Sum_probs=55.4

Q ss_pred             ccCCCCEEEEecCCCc--EEEEEcCcccEEEEEecCcccEEEEeecCCCCeEE-Eec---CCCcEEEEcCCCCC
Q 004745          604 LGQRGDYIASGSDDGR--WFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVA-TSG---IDNTIKIWTPSASV  671 (732)
Q Consensus       604 ~s~dg~~lasgs~Dg~--i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~-S~s---~D~~i~vW~~~~~~  671 (732)
                      +++++.+++++..|+.  |++||+.+|+.+..+..|.+.|.+++++|++..|+ +.+   ..++|.+||+.+++
T Consensus       343 ~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          343 CVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            4678889999999985  56678778998899999988999999999997544 333   45789999998877

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.42  E-value=5.7e-10  Score=111.97  Aligned_cols=202  Identities=9%  Similarity=0.041  Sum_probs=137.2

Q ss_pred             eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004745           15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS   94 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~   94 (732)
                      +..+...+.++++.++|+++++...++.|.+||.. ++........+...+.+++++++  |.++++...++.|..||..
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD--GEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC--CCEEEeCCCCCeEEEECCC
Confidence            44566789999999999988877668899999988 55443221235577999999998  5777776668889999876


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                      .   ..      . ...+......+.++++.|++ +++++...++.|.+||. +++..             .+.      
T Consensus        87 g---~~------~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~-------------~~~------  135 (299)
T 2z2n_A           87 G---II------K-EYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIR-------------EYE------  135 (299)
T ss_dssp             S---CE------E-EEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-------------EEE------
T ss_pred             C---cE------E-EEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEE-------------Eec------
Confidence            2   11      0 11122244578899999854 77777777789999998 44310             000      


Q ss_pred             ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  254 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  254 (732)
                           .+.....+.+++++++ ++++++...++.|..||. +++.. .+.            .      ..... .+..+
T Consensus       136 -----~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~-~~~------------~------~~~~~-~~~~i  188 (299)
T 2z2n_A          136 -----LPNKGSYPSFITLGSD-NALWFTENQNNAIGRITE-SGDIT-EFK------------I------PTPAS-GPVGI  188 (299)
T ss_dssp             -----CSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEE-EEE------------C------SSTTC-CEEEE
T ss_pred             -----CCCCCCCCceEEEcCC-CCEEEEeCCCCEEEEEcC-CCcEE-Eee------------C------CCCCC-cceeE
Confidence                 0112236789999998 677777767789999998 44321 110            0      01111 47889


Q ss_pred             EEcCCCCEEEEEecCCeEEEEEC
Q 004745          255 TFSPNGEEVLLSYSGEHVYLMDV  277 (732)
Q Consensus       255 ~~sp~g~~l~~~~~dg~v~iwd~  277 (732)
                      +++++|++.++...++.|.+||.
T Consensus       189 ~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          189 TKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             EECTTSSEEEEETTTTEEEEECT
T ss_pred             EECCCCCEEEEccCCceEEEECC
Confidence            99999986666666788998887

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.41  E-value=3.4e-11  Score=120.34  Aligned_cols=201  Identities=9%  Similarity=0.133  Sum_probs=140.3

Q ss_pred             cCCceeEEEE-cCCCCEEEEEeC-CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004745           18 HQGCVNAISW-NSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR   95 (732)
Q Consensus        18 h~~~V~~l~~-s~dg~~lasg~~-dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~   95 (732)
                      |...+.++++ .++++++++... ++.|++|| .+++.+..+...+...+.+++++|+  |+++++...++.|.+||...
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~g  151 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFDQNG  151 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEECTTS
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCC--CCEEEEECCCCEEEEEcCCC
Confidence            4567889999 578877777643 78999999 6677777774445567899999998  57888877889999999652


Q ss_pred             CCCCCCCCCCCCCceeec--cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745           96 FSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                         .        .+..+.  .+...+.+++++|++ +++++...++.|++||.....               +..+.   
T Consensus       152 ---~--------~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~---------------~~~~~---  201 (286)
T 1q7f_A          152 ---N--------VLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY---------------LRQIG---  201 (286)
T ss_dssp             ---C--------EEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE---------------EEEES---
T ss_pred             ---C--------EEEEeCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCCE---------------EEEEc---
Confidence               1        123332  345578999999954 788777788999999974321               11100   


Q ss_pred             cccccCCCCCccceEEEEecCCCCCEEEEEeCCC-eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004745          174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  252 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (732)
                            ..++...+.+++++++ ++++++...++ .|++||.. ++.+..+..                  ..... .+.
T Consensus       202 ------~~g~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~------------------~~~~~-~~~  254 (286)
T 1q7f_A          202 ------GEGITNYPIGVGINSN-GEILIADNHNNFNLTIFTQD-GQLISALES------------------KVKHA-QCF  254 (286)
T ss_dssp             ------CTTTSCSEEEEEECTT-CCEEEEECSSSCEEEEECTT-SCEEEEEEE------------------SSCCS-CEE
T ss_pred             ------cCCccCCCcEEEECCC-CCEEEEeCCCCEEEEEECCC-CCEEEEEcc------------------cCCCC-cce
Confidence                  0112236789999998 77888887776 99999964 332222210                  01111 377


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          253 HVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +++++|+|+++++ +.++.|++|++..
T Consensus       255 ~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          255 DVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             eEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            8999999986655 6799999999866

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.39  E-value=6.2e-11  Score=121.40  Aligned_cols=214  Identities=8%  Similarity=0.057  Sum_probs=141.7

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC----
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD----   85 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d----   85 (732)
                      +....+.++...+.+++|+|+|++++++..++.|.+||..+++..... ..+...+.+++|+|+  |+++++...+    
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~d--g~l~v~~~~~~~~~  111 (333)
T 2dg1_A           35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD--GRLFVCYLGDFKST  111 (333)
T ss_dssp             EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT--SCEEEEECTTSSSC
T ss_pred             ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCC--CcEEEEeCCCCCCC
Confidence            344556677788899999999998888888999999999888766544 356678999999998  5777777666    


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceee--ccccCceeEEEEecCCCcEEEEEeC------CCcEEEEECCCCCCCCCCCC
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQGSSCPPAGS  157 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~  157 (732)
                      +.|.+||..+...          ...+  ..+...+.+++++|++ +++++...      .+.|..+|..+++..     
T Consensus       112 ~~i~~~d~~~~~~----------~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-----  175 (333)
T 2dg1_A          112 GGIFAATENGDNL----------QDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT-----  175 (333)
T ss_dssp             CEEEEECTTSCSC----------EEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE-----
T ss_pred             ceEEEEeCCCCEE----------EEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEE-----
Confidence            6899999875321          1111  1234578999999965 77766553      245555555433210     


Q ss_pred             CCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEE-EEEeCCCeEEEEECCC-CCCCcccccCCCCCCcccc
Q 004745          158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNY  235 (732)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~  235 (732)
                             .+.              .....+..++|+|+ ++.| ++...++.|.+||+.+ +..+..+..        ..
T Consensus       176 -------~~~--------------~~~~~~~~i~~~~d-g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~--------~~  225 (333)
T 2dg1_A          176 -------PII--------------QNISVANGIALSTD-EKVLWVTETTANRLHRIALEDDGVTIQPFGA--------TI  225 (333)
T ss_dssp             -------EEE--------------EEESSEEEEEECTT-SSEEEEEEGGGTEEEEEEECTTSSSEEEEEE--------EE
T ss_pred             -------Eee--------------cCCCcccceEECCC-CCEEEEEeCCCCeEEEEEecCCCcCcccccc--------eE
Confidence                   000              01124678999999 6644 5555678999999864 222211100        00


Q ss_pred             ccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                      +  ...  .++  ..+..++++++|+++++...++.|.+||..
T Consensus       226 ~--~~~--~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          226 P--YYF--TGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             E--EEC--CSS--SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             E--Eec--CCC--CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            0  000  111  137889999999977777778999999984

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.38  E-value=1e-11  Score=140.81  Aligned_cols=205  Identities=10%  Similarity=0.017  Sum_probs=127.2

Q ss_pred             ccCCceeEEEEcCCCCEEE-----EEeCCCcEEEEeCCCCeeE-EEEccCCCcCeEEEEEecCCCCCEEEEEECCCc---
Q 004745           17 GHQGCVNAISWNSKGSLLI-----SGSDDTHINVWSYSSRKLL-HSIETGHSANVFCTKFVPETSDELVVSGAGDAE---   87 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~la-----sg~~dg~i~vWd~~~~~~~-~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~---   87 (732)
                      +|...+..++|||||++||     .|+.+.+|++||+.+++.+ .......  ....++|+|+  |+.|+.++.|..   
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~~wspD--g~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG--KYATPKWTPD--SKGFYYEWLPTDPSI  193 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC--TTCCCEECTT--SSEEEEEECCCCTTS
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc--cccceEEecC--CCEEEEEEecCCCCC
Confidence            4556799999999999999     4445578999999999865 2111111  1268999999  588999888776   


Q ss_pred             ----------EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC----cEEEEECCCCCCCC
Q 004745           88 ----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSSCP  153 (732)
Q Consensus        88 ----------i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg----~i~vwd~~~~~~~~  153 (732)
                                |++|++.++....      ..+.....|...+..+.|+|++ ++|+..+.++    .|.+|+..+++.  
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~------~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~--  264 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKD------TVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDF--  264 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGC------EEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSC--
T ss_pred             ccccCCCCCEEEEEECCCCchhc------eEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCce--
Confidence                      9999998754211      1233344456678899999977 5555555444    566665433321  


Q ss_pred             CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe---CCCeEEEEECCCCCCCcccccCCCCC
Q 004745          154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPPLTSCQKRMSPP  230 (732)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~---~dg~v~iwd~~~~~~~~~~~~~~~~~  230 (732)
                                ..+..              +...+....+ ++++ +++...   .++.|.+||+.+.... .+       
T Consensus       265 ----------~~l~~--------------~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~-~~-------  310 (695)
T 2bkl_A          265 ----------RLLVK--------------GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA-SW-------  310 (695)
T ss_dssp             ----------EEEEE--------------CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG-GC-------
T ss_pred             ----------EEeec--------------CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc-CC-------
Confidence                      11110              1112334445 5534 555544   2588999999765320 00       


Q ss_pred             CccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          231 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                         ..+.      ..+....+..++|+ ++.++++...|+..+||.+.
T Consensus       311 ---~~l~------~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          311 ---KEIV------PEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             ---EEEE------CCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             ---eEEe------cCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence               0000      11112247888888 67778888889988888654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.38  E-value=2.9e-11  Score=137.12  Aligned_cols=66  Identities=8%  Similarity=-0.128  Sum_probs=54.3

Q ss_pred             CCCEEEEecCCCcEEEEEcC-cccEEEEEecC-cccEEEEeecCCCCeEE----EecCCCcEEEEcCCCCCC
Q 004745          607 RGDYIASGSDDGRWFIWEKQ-TGRLIKMLLGD-EAVVNCVQCHPFDCVVA----TSGIDNTIKIWTPSASVP  672 (732)
Q Consensus       607 dg~~lasgs~Dg~i~iWd~~-tg~~~~~l~gH-~~~V~~v~fsp~~~~l~----S~s~D~~i~vW~~~~~~~  672 (732)
                      +++++++...|+..+||.+. +|+.+..+..| ...|.+++++|++..|+    |....++|.+||+.+++.
T Consensus       329 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          329 GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            77899999999999999766 57777888776 77899999999998666    444567899999988763

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.36  E-value=1.3e-10  Score=116.78  Aligned_cols=167  Identities=10%  Similarity=0.017  Sum_probs=109.8

Q ss_pred             eeEEEEccCCCcCeEEEEEecCCCCC-EEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCc
Q 004745           52 KLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH  130 (732)
Q Consensus        52 ~~~~~~~~~h~~~V~~~~~s~~~~g~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  130 (732)
                      ..+..+ ..+.....+++|+|+  |+ +++++..++.|..|+....            ...+..+...+.+++++|++ +
T Consensus        18 ~~~~~l-~~~~~~~eg~~~d~~--g~~l~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~~~l~~~~dg-~   81 (296)
T 3e5z_A           18 AEARRL-ADGFTWTEGPVYVPA--RSAVIFSDVRQNRTWAWSDDGQ------------LSPEMHPSHHQNGHCLNKQG-H   81 (296)
T ss_dssp             CCCEEE-ECCCSSEEEEEEEGG--GTEEEEEEGGGTEEEEEETTSC------------EEEEESSCSSEEEEEECTTC-C
T ss_pred             CcEEEE-ecCCccccCCeEeCC--CCEEEEEeCCCCEEEEEECCCC------------eEEEECCCCCcceeeECCCC-c
Confidence            334444 345566789999999  46 7888888999999999853            34455566789999999955 7


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEE----e--
Q 004745          131 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG----G--  204 (732)
Q Consensus       131 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg----~--  204 (732)
                      ++++...++.|.+||..+++..            .+.....+         .....+..++++|+ ++++++.    +  
T Consensus        82 l~v~~~~~~~i~~~d~~~g~~~------------~~~~~~~~---------~~~~~~~~i~~d~~-G~l~vtd~~~g~~~  139 (296)
T 3e5z_A           82 LIACSHGLRRLERQREPGGEWE------------SIADSFEG---------KKLNSPNDVCLAPD-GSLWFSDPTYGIDK  139 (296)
T ss_dssp             EEEEETTTTEEEEECSTTCCEE------------EEECEETT---------EECCCCCCEEECTT-SCEEEEECSHHHHC
T ss_pred             EEEEecCCCeEEEEcCCCCcEE------------EEeeccCC---------CCCCCCCCEEECCC-CCEEEECCcccccc
Confidence            7777766789999998776521            11100000         01124567899998 7787773    2  


Q ss_pred             -----------CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEE
Q 004745          205 -----------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY  273 (732)
Q Consensus       205 -----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~  273 (732)
                                 ..+.|..++.. ++ +..+                    ..+.. ....++|+|+|+.|++.+.++.|+
T Consensus       140 ~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~--------------------~~~~~-~~~gi~~s~dg~~lv~~~~~~~i~  196 (296)
T 3e5z_A          140 PEEGYGGEMELPGRWVFRLAPD-GT-LSAP--------------------IRDRV-KPNGLAFLPSGNLLVSDTGDNATH  196 (296)
T ss_dssp             GGGSSCCCCCSSSCEEEEECTT-SC-EEEE--------------------ECCCS-SEEEEEECTTSCEEEEETTTTEEE
T ss_pred             ccccccccccCCCcEEEEECCC-CC-EEEe--------------------ecCCC-CCccEEECCCCCEEEEeCCCCeEE
Confidence                       13456556554 21 1111                    11111 368899999999887777789999


Q ss_pred             EEECCC
Q 004745          274 LMDVNH  279 (732)
Q Consensus       274 iwd~~~  279 (732)
                      +|++..
T Consensus       197 ~~~~~~  202 (296)
T 3e5z_A          197 RYCLNA  202 (296)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            999863

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.34  E-value=9.2e-11  Score=119.60  Aligned_cols=182  Identities=5%  Similarity=-0.061  Sum_probs=113.6

Q ss_pred             CCCcEEEEeCCCCeeEEEEcc-----CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeec
Q 004745           39 DDTHINVWSYSSRKLLHSIET-----GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ  113 (732)
Q Consensus        39 ~dg~i~vWd~~~~~~~~~~~~-----~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  113 (732)
                      .+++|.+||..+++....+..     ........+.+..+   .++++...++.|.+||..+.+          .+..+.
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~---~lyv~~~~~~~v~viD~~t~~----------~~~~i~   81 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDG---IGWIVVNNSHVIFAIDINTFK----------EVGRIT   81 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETT---EEEEEEGGGTEEEEEETTTCC----------EEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECC---EEEEEEcCCCEEEEEECcccE----------EEEEcC
Confidence            378999999999987765421     12244677887643   667777778999999998743          234443


Q ss_pred             cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEec
Q 004745          114 CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  193 (732)
Q Consensus       114 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  193 (732)
                       .......+++++++ .++++...++.|.+||+.+.+..              ..+..+.      ..+.......+++ 
T Consensus        82 -~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~--------------~~i~~g~------~~~~~~~p~~i~~-  138 (328)
T 3dsm_A           82 -GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEIT--------------GYIECPD------MDMESGSTEQMVQ-  138 (328)
T ss_dssp             -CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEE--------------EEEECTT------CCTTTCBCCCEEE-
T ss_pred             -CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEE--------------EEEEcCC------ccccCCCcceEEE-
Confidence             34678899998855 66666557899999999876521              0011000      0001112344556 


Q ss_pred             CCCCCEEEEEe-CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC---
Q 004745          194 STRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---  269 (732)
Q Consensus       194 ~~~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d---  269 (732)
                       +++.++++.. .++.|.+||+.+.+.+..+..                   +.   ....++++|+|++++++..+   
T Consensus       139 -~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-------------------g~---~p~~i~~~~dG~l~v~~~~~~~~  195 (328)
T 3dsm_A          139 -YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-------------------GI---QPTSLVMDKYNKMWTITDGGYEG  195 (328)
T ss_dssp             -ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-------------------SS---CBCCCEECTTSEEEEEBCCBCTT
T ss_pred             -ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-------------------CC---CccceEEcCCCCEEEEECCCccC
Confidence             3244444443 488999999998764433310                   00   24567889999866655443   


Q ss_pred             -------CeEEEEECCC
Q 004745          270 -------EHVYLMDVNH  279 (732)
Q Consensus       270 -------g~v~iwd~~~  279 (732)
                             +.|.++|..+
T Consensus       196 ~~~~~~~~~v~~id~~t  212 (328)
T 3dsm_A          196 SPYGYEAPSLYRIDAET  212 (328)
T ss_dssp             CSSCBCCCEEEEEETTT
T ss_pred             CccccCCceEEEEECCC
Confidence                   5677776655

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.33  E-value=1.2e-09  Score=118.77  Aligned_cols=215  Identities=12%  Similarity=0.135  Sum_probs=142.4

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeeEEEEccCCCcCeEEEEEe----cCCCCCEEEE
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFV----PETSDELVVS   81 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~--~~~~~~~~~~~h~~~V~~~~~s----~~~~g~~l~s   81 (732)
                      +.+++.++.. ...+..+.|+|||++|++++.|+.|.+||+.  +++.+.++..  ......++|+    |+  |+++++
T Consensus       186 t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pD--Gk~l~v  260 (567)
T 1qks_A          186 TYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWE--DKYAIA  260 (567)
T ss_dssp             TCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCT--TTEEEE
T ss_pred             CCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCC--CCEEEE
Confidence            3455555543 3356789999999999999999999999996  8888888843  2346799999    68  577766


Q ss_pred             EE-CCCcEEEEEcCCCCCCCCCCCCCCCceeecc----------ccC-ceeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004745           82 GA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HTR-RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  149 (732)
Q Consensus        82 ~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----------h~~-~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~  149 (732)
                      ++ .++.|.|+|..+.+          ++..+.-          |.. .+..+..+++++.++++...+|.|.++|....
T Consensus       261 ~n~~~~~v~ViD~~t~~----------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~  330 (567)
T 1qks_A          261 GAYWPPQYVIMDGETLE----------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL  330 (567)
T ss_dssp             EEEETTEEEEEETTTCC----------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred             EEccCCeEEEEECCCCc----------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC
Confidence            65 46999999987642          2332221          222 57788888877777778888899999998765


Q ss_pred             CCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEE-EeCCCeEEEEECCCCCCCcccccCCC
Q 004745          150 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPPLTSCQKRMS  228 (732)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t-g~~dg~v~iwd~~~~~~~~~~~~~~~  228 (732)
                      +..            .+..+.            .......+.|+|+ ++++++ ...++.|.++|+.+++.+..+...  
T Consensus       331 ~~~------------~v~~i~------------~~~~~~d~~~~pd-gr~~~va~~~sn~V~ViD~~t~kl~~~i~vg--  383 (567)
T 1qks_A          331 NNL------------KTTEIS------------AERFLHDGGLDGS-HRYFITAANARNKLVVIDTKEGKLVAIEDTG--  383 (567)
T ss_dssp             SEE------------EEEEEE------------CCSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTTTEEEEEEECS--
T ss_pred             ccc------------eeeeee------------ccccccCceECCC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecc--
Confidence            311            111111            1124567899999 566554 446789999999987654333110  


Q ss_pred             CCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe--cCCeEEEEECCC
Q 004745          229 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNH  279 (732)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~--~dg~v~iwd~~~  279 (732)
                                   ....|.+..+. + ++|++..+++.+  .++.|.++|..+
T Consensus       384 -------------g~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          384 -------------GQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             -------------SSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             -------------CcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence                         00112221232 2 688855554443  468999999887

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.30  E-value=1.4e-10  Score=116.40  Aligned_cols=212  Identities=9%  Similarity=0.041  Sum_probs=139.2

Q ss_pred             hhhccccEeeeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745            6 VRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus         6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      +.....+..+..+.....+++|+|+|+ +++++..++.|.+||..++  ...+ ..+...+.+++++|+  |+++++...
T Consensus        14 ~~~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~d--g~l~v~~~~   88 (296)
T 3e5z_A           14 FPAGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQ--GHLIACSHG   88 (296)
T ss_dssp             SCTTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTT--CCEEEEETT
T ss_pred             cCCCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCC--CcEEEEecC
Confidence            344556677777888889999999998 7888888999999999887  4555 467778999999998  577777766


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeecc-ccCceeEEEEecCCCcEEEEEeC-----------------CCcEEEEEC
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASE-----------------DGTLRQHDF  146 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~-----------------dg~i~vwd~  146 (732)
                      ++.|.+||..++....       ......+ ....++.+++.|++ +++++.+.                 .+.|..++.
T Consensus        89 ~~~i~~~d~~~g~~~~-------~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~  160 (296)
T 3e5z_A           89 LRRLERQREPGGEWES-------IADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP  160 (296)
T ss_dssp             TTEEEEECSTTCCEEE-------EECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred             CCeEEEEcCCCCcEEE-------EeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECC
Confidence            7899999986543110       0001111 12356789999955 77776321                 234544544


Q ss_pred             CCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC-CCCCCccccc
Q 004745          147 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQK  225 (732)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~-~~~~~~~~~~  225 (732)
                      . ++.            .           .+   .........++|+|+ ++.|++.+.++.|++||+. ++......  
T Consensus       161 ~-g~~------------~-----------~~---~~~~~~~~gi~~s~d-g~~lv~~~~~~~i~~~~~~~~g~~~~~~--  210 (296)
T 3e5z_A          161 D-GTL------------S-----------AP---IRDRVKPNGLAFLPS-GNLLVSDTGDNATHRYCLNARGETEYQG--  210 (296)
T ss_dssp             T-SCE------------E-----------EE---ECCCSSEEEEEECTT-SCEEEEETTTTEEEEEEECSSSCEEEEE--
T ss_pred             C-CCE------------E-----------Ee---ecCCCCCccEEECCC-CCEEEEeCCCCeEEEEEECCCCcCcCCC--
Confidence            3 220            0           00   112235678999999 6777777788999999987 32210000  


Q ss_pred             CCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          226 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                              ..+ .     . +.. .+.+++++++|+++++.  ++.|.+|+..
T Consensus       211 --------~~~-~-----~-~~~-~p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          211 --------VHF-T-----V-EPG-KTDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             --------EEE-C-----C-SSS-CCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             --------eEe-e-----C-CCC-CCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence                    001 0     0 111 25678999999865555  8899999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.29  E-value=4.9e-11  Score=125.29  Aligned_cols=232  Identities=6%  Similarity=-0.076  Sum_probs=139.5

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEE-------------------EEEecCCCCCEEEEE
Q 004745           22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC-------------------TKFVPETSDELVVSG   82 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~-------------------~~~s~~~~g~~l~s~   82 (732)
                      ...+.|+|||++|+.++.++.|++||+.+++..... ..+......                   +.|+|+  ++.++.+
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd--g~~~~~~  159 (396)
T 3c5m_A           83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL--TSWEKFA  159 (396)
T ss_dssp             TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC--CSHHHHH
T ss_pred             cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCC--Ccceeee
Confidence            334889999999999999999999999988765554 333332222                   345666  3444433


Q ss_pred             -----ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC------CcEEEEECCCCCC
Q 004745           83 -----AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGSS  151 (732)
Q Consensus        83 -----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~~~~  151 (732)
                           ..+..|.+||+.++.           ...+..+...+..+.|+|+++..|+..+.+      ..|.+||+..++.
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~-----------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~  228 (396)
T 3c5m_A          160 EFYHTNPTCRLIKVDIETGE-----------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV  228 (396)
T ss_dssp             HHHHTCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred             eeccCCCcceEEEEECCCCc-----------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence                 356689999988642           233335677889999999433555555443      3578888765431


Q ss_pred             CCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-----CeEEEEECCCCCCCcccccC
Q 004745          152 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRMLPPLTSCQKR  226 (732)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-----g~v~iwd~~~~~~~~~~~~~  226 (732)
                      .                       .+.. ......+..+.|+|+ ++.|+.++.+     +.|++||+.+++.....   
T Consensus       229 ~-----------------------~l~~-~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~---  280 (396)
T 3c5m_A          229 R-----------------------KIKE-HAEGESCTHEFWIPD-GSAMAYVSYFKGQTDRVIYKANPETLENEEVM---  280 (396)
T ss_dssp             E-----------------------ESSC-CCTTEEEEEEEECTT-SSCEEEEEEETTTCCEEEEEECTTTCCEEEEE---
T ss_pred             e-----------------------Eeec-cCCCccccceEECCC-CCEEEEEecCCCCccceEEEEECCCCCeEEee---
Confidence            1                       1111 111235778999999 6666655443     44999999876421100   


Q ss_pred             CCCCCccccccccccccCCCccccEEEEEEcC-CCCEEEEEe----------------cCCeEEEEECCCCCCcceeeec
Q 004745          227 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSY----------------SGEHVYLMDVNHAGGRAMRYTV  289 (732)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~----------------~dg~v~iwd~~~~~~~~~~~~~  289 (732)
                                       . ..  ... +.|+| +|++++.++                .++.|++||+.+++... +..+
T Consensus       281 -----------------~-~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~  338 (396)
T 3c5m_A          281 -----------------V-MP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKH  338 (396)
T ss_dssp             -----------------E-CC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEEC
T ss_pred             -----------------e-CC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCC
Confidence                             0 00  123 89999 999888765                34789999998754322 2211


Q ss_pred             CCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004745          290 GDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (732)
                      ......  +.+   ..........|+|||+.++
T Consensus       339 ~~~~~~--~~~---~~~~~~~~~~~s~dg~~l~  366 (396)
T 3c5m_A          339 STSWDV--LDG---DRQITHPHPSFTPNDDGVL  366 (396)
T ss_dssp             CCCCCC--BTT---BSSTTCCCCEECTTSSEEE
T ss_pred             CCcccc--ccc---cccCCCCCceEccCCCeEE
Confidence            110000  000   0011244567899998877

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.28  E-value=1.7e-10  Score=131.21  Aligned_cols=210  Identities=11%  Similarity=0.029  Sum_probs=132.5

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc-----
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE-----   87 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg-----~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~-----   87 (732)
                      |...+..++|||||++||.+..++     .|++||+.+++.+.... .+ ..+..++|+|+  |+.|+.++.++.     
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~-~~~~~~~wspD--g~~l~~~~~~~~~~~~~  198 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ER-VKFSCMAWTHD--GKGMFYNAYPQQDGKSD  198 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EE-ECSCCEEECTT--SSEEEEEECCCCSSCCS
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cC-cccceEEEEeC--CCEEEEEEECCcccccc
Confidence            445688999999999999776533     89999999998776442 22 23678999999  588888887766     


Q ss_pred             -----------EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC-----CCcEEEEECCC---
Q 004745           88 -----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQ---  148 (732)
Q Consensus        88 -----------i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-----dg~i~vwd~~~---  148 (732)
                                 |++|++.++....      ..+.....|...+..+.|+|++ ++|+..+.     +..|.+||+.+   
T Consensus       199 ~~~~~~~~~~~v~~~~l~t~~~~~------~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~  271 (710)
T 2xdw_A          199 GTETSTNLHQKLYYHVLGTDQSED------ILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESN  271 (710)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred             ccccccCCCCEEEEEECCCCcccc------eEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECccccc
Confidence                       9999998643211      0122223355668899999966 66655543     56899999876   


Q ss_pred             ---CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC----CeEEEEECCCCCCCc
Q 004745          149 ---GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPPLT  221 (732)
Q Consensus       149 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d----g~v~iwd~~~~~~~~  221 (732)
                         +...          ...+.           .   +...+.. .|+|+ +..|+..+..    +.|.+||+.+.... 
T Consensus       272 ~~~~~~~----------~~~l~-----------~---~~~~~~~-~~s~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~-  324 (710)
T 2xdw_A          272 GITGILK----------WVKLI-----------D---NFEGEYD-YVTNE-GTVFTFKTNRHSPNYRLINIDFTDPEES-  324 (710)
T ss_dssp             SSCSSCC----------CEEEE-----------C---SSSSCEE-EEEEE-TTEEEEEECTTCTTCEEEEEETTSCCGG-
T ss_pred             ccCCccc----------eEEee-----------C---CCCcEEE-EEecc-CCEEEEEECCCCCCCEEEEEeCCCCCcc-
Confidence               3210          01111           0   1112222 47787 4555554442    36999999865310 


Q ss_pred             ccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCe--EEEEECCCCC
Q 004745          222 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH--VYLMDVNHAG  281 (732)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~--v~iwd~~~~~  281 (732)
                                ..+.+.      .......+..++|++++.++++...++.  |++|++.+++
T Consensus       325 ----------~~~~l~------~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~  370 (710)
T 2xdw_A          325 ----------KWKVLV------PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA  370 (710)
T ss_dssp             ----------GCEEEE------CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             ----------cceecc------CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence                      001110      1111124888999988888888888884  5666775554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.27  E-value=9.6e-09  Score=106.11  Aligned_cols=193  Identities=12%  Similarity=0.008  Sum_probs=118.7

Q ss_pred             EEcCCCCEEEEEeC--CC---cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE----------CCCcEEE
Q 004745           26 SWNSKGSLLISGSD--DT---HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRL   90 (732)
Q Consensus        26 ~~s~dg~~lasg~~--dg---~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~----------~dg~i~v   90 (732)
                      ...|+++++.+...  ..   +|.++|..+++.+.++..+ ..+  .+.++|+  |++++.+.          .++.|.+
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spD--g~~lyv~n~~~~~~~rg~~~~~v~v  101 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAHS--GSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECCC--CCEEEEEeccccccccCCCCCeEEE
Confidence            44578887776653  22   8899999999999888433 333  9999999  57877775          3678999


Q ss_pred             EEcCCCCCCCCCCCCCCCceeecc-------ccCceeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcc
Q 004745           91 FNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      ||+.+.+.          +..+.-       +......++|+|++ ++|+.++.  ++.|.++| .+++....       
T Consensus       102 iD~~t~~~----------~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~~~~~~v~viD-~t~~~~~~-------  162 (373)
T 2mad_H          102 FDPVTFLP----------IADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLVV-QGGSSDDQ-------  162 (373)
T ss_pred             EECCCCcE----------EEEEECCCccccccCCCccceEECCCC-CEEEEEecCCCCeEEEEE-CCCCEEeE-------
Confidence            99986321          222211       01235589999966 66666653  57899999 87762200       


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                          +          + ..+      .++.+.|++.+.+++.+.||.+.++|. +++........        ..    .
T Consensus       163 ----~----------i-~~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~--------~~----~  208 (373)
T 2mad_H          163 ----L----------L-SSP------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVG--------AM----L  208 (373)
T ss_pred             ----E----------c-CCC------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecc--------cc----c
Confidence                0          0 000      124455665567778888999999999 66543211000        00    0


Q ss_pred             ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                        .+... -.....+.+++..++..+..+.|.+.|+.+
T Consensus       209 --~~~~p-~~~~~~~~~~~~~~~~~~~~~~v~vid~~~  243 (373)
T 2mad_H          209 --TAAQN-LLTQPAQANKSGRIVWPVYSGKILQADISA  243 (373)
T ss_pred             --cCCcc-eeecceeEecCCEEEEEcCCceEEEEeccC
Confidence              00000 123356677666555555788899998876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.22  E-value=1.3e-09  Score=107.67  Aligned_cols=201  Identities=6%  Similarity=0.009  Sum_probs=138.8

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS   97 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~   97 (732)
                      +...+.+++++++|+++++.. ++.|.+||....... .+.......+.+++++|+  |.++++...++.|.+|+..+..
T Consensus        65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~~~~  140 (270)
T 1rwi_B           65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKT  140 (270)
T ss_dssp             SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTT--CCEEEEEGGGTEEEEECTTCCS
T ss_pred             CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCC--CCEEEEECCCCEEEEEECCCce
Confidence            335788999999999777665 889999998765443 331233367899999998  5777777778899999755321


Q ss_pred             CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004745           98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  177 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (732)
                      .          ..........+.++++.|++ +++++...++.|.+||.......              .          
T Consensus       141 ~----------~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~--------------~----------  185 (270)
T 1rwi_B          141 Q----------TVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQV--------------V----------  185 (270)
T ss_dssp             C----------EECCCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEE--------------E----------
T ss_pred             e----------EeeccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceE--------------e----------
Confidence            1          11112223467889999955 77777777789999998765311              0          


Q ss_pred             cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004745          178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  257 (732)
Q Consensus       178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  257 (732)
                       ........+.+++++++ +.++++...++.|.+||........ .              .     ..+.. .+.+++++
T Consensus       186 -~~~~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~-~--------------~-----~~~~~-~p~~i~~~  242 (270)
T 1rwi_B          186 -LPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTV-L--------------P-----FTGLN-TPLAVAVD  242 (270)
T ss_dssp             -CCCSSCCSEEEEEECTT-CCEEEEETTTSCEEEECTTCSCCEE-C--------------C-----CCSCS-CEEEEEEC
T ss_pred             -ecccCCCCceEEEECCC-CCEEEEECCCCcEEEEcCCCCccee-e--------------c-----cCCCC-CceeEEEC
Confidence             00011136788999998 6777777778899999987543211 0              0     11111 48899999


Q ss_pred             CCCCEEEEEecCCeEEEEECCCC
Q 004745          258 PNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       258 p~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      |+|+++++...++.|++|++...
T Consensus       243 ~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          243 SDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             TTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCCCEEEEECCCCEEEEEcCCCc
Confidence            99998788888999999998873

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.21  E-value=4.6e-10  Score=115.52  Aligned_cols=185  Identities=8%  Similarity=0.028  Sum_probs=118.4

Q ss_pred             CceeEEEEcCCCCEEEEEeCC---C--cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC---------
Q 004745           20 GCVNAISWNSKGSLLISGSDD---T--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---------   85 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~d---g--~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---------   85 (732)
                      ..+..++|||||++||.++.+   +  .|.+||+.+++..... . +.. +..++|+|+  |+.|+.++.+         
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wspd--g~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNED--SRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECTT--SSEEEEEEECCCC------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECCC--CCEEEEEEccCCCcCCcEE
Confidence            467889999999999987653   2  4888898888766544 2 334 999999999  4777777632         


Q ss_pred             ------------------CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC-------c
Q 004745           86 ------------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-------T  140 (732)
Q Consensus        86 ------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-------~  140 (732)
                                        ..|.+||+.++..          +..+.. . .+..+.|+|++  +++++..++       .
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~----------~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~  199 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEV----------IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKF  199 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTEE----------EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCC
T ss_pred             EcccceeecCcccccCccceEEEEECCCCeE----------EeeecC-C-CcccccCCCCe--EEEEEeccccccccccc
Confidence                              5688899875321          133333 3 78899999965  776665542       3


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC--------CeEEEE
Q 004745          141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD--------AFARLY  212 (732)
Q Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d--------g~v~iw  212 (732)
                      ..+|.+.+++                       ...+..   + ..+..+  +|+ ++.|+.++.+        ..|.+|
T Consensus       200 ~~l~~~d~~~-----------------------~~~l~~---~-~~~~~~--spd-g~~l~~~~~~~~~~~~~~~~l~~~  249 (347)
T 2gop_A          200 WDIYIWEDGK-----------------------EEKMFE---K-VSFYAV--DSD-GERILLYGKPEKKYMSEHNKLYIY  249 (347)
T ss_dssp             EEEEEEETTE-----------------------EEEEEE---E-ESEEEE--EEC-SSCEEEEECCSSSCCCSSCEEEEE
T ss_pred             ccEEEeCCCc-----------------------eEEecc---C-cceeeE--CCC-CCEEEEEEccccCCccccceEEEE
Confidence            4455443221                       001110   1 234443  888 6677666643        368888


Q ss_pred             ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE-EEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH-VTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      |  +++.. .+.                   .++.. .+.. +.|+ ++ ++++++.++.++|| +.+
T Consensus       250 d--~~~~~-~l~-------------------~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~  291 (347)
T 2gop_A          250 D--GKEVM-GIL-------------------DEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD  291 (347)
T ss_dssp             C--SSCEE-ESS-------------------TTCCS-EEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred             C--CCceE-ecc-------------------ccCCc-ccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence            8  33211 110                   12222 4775 8999 88 88999999999999 874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.20  E-value=1.7e-09  Score=106.70  Aligned_cols=233  Identities=7%  Similarity=-0.063  Sum_probs=147.7

Q ss_pred             ceeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004745           21 CVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR   99 (732)
Q Consensus        21 ~V~~l~~s~dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~   99 (732)
                      ...+++++++|++++ +...++.|.+||..+....... ..+...+.+++++++  |+++++.. ++.|.+||.....  
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~--g~l~v~~~-~~~i~~~d~~~~~--   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGA--GTVYVTDF-NNRVVTLAAGSNN--   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-CCSCCSCCCEEECTT--CCEEEEET-TTEEEEECTTCSC--
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-eCCcCCcceeEECCC--CCEEEEcC-CCEEEEEeCCCce--
Confidence            778999999999777 5467889999997665433222 234456889999998  47666655 8899999987422  


Q ss_pred             CCCCCCCCCceeec-cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004745          100 GLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  178 (732)
Q Consensus       100 ~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (732)
                               ...+. .....+.++++.|++ +++++...++.|.+|+..+....             .            
T Consensus        99 ---------~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~-------------~------------  143 (270)
T 1rwi_B           99 ---------QTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQT-------------V------------  143 (270)
T ss_dssp             ---------CEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCE-------------E------------
T ss_pred             ---------EeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeE-------------e------------
Confidence                     12221 223568899999955 77777777889999975443211             0            


Q ss_pred             CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004745          179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  258 (732)
Q Consensus       179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  258 (732)
                      ........+.+++++++ ++++++...++.|.+||..........                    .... ..+.++++++
T Consensus       144 ~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~~~--------------------~~~~-~~p~~i~~d~  201 (270)
T 1rwi_B          144 LPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVVLP--------------------FTDI-TAPWGIAVDE  201 (270)
T ss_dssp             CCCCSCCSCCCEEECTT-CCEEEEEGGGTEEEEECTTTCCEEECC--------------------CSSC-CSEEEEEECT
T ss_pred             eccccCCCceeEEEeCC-CCEEEEECCCCEEEEEecCCCceEeec--------------------ccCC-CCceEEEECC
Confidence            00111124577899998 677777777889999998765321100                    0111 1488999999


Q ss_pred             CCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHH
Q 004745          259 NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRML  335 (732)
Q Consensus       259 ~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l  335 (732)
                      +|.++++...++.|.+|+........ .             +  ......+..+++.++|+..+   +...++.+.+
T Consensus       202 ~g~l~v~~~~~~~v~~~~~~~~~~~~-~-------------~--~~~~~~p~~i~~~~~g~l~v---~~~~~~~v~~  259 (270)
T 1rwi_B          202 AGTVYVTEHNTNQVVKLLAGSTTSTV-L-------------P--FTGLNTPLAVAVDSDRTVYV---ADRGNDRVVK  259 (270)
T ss_dssp             TCCEEEEETTTSCEEEECTTCSCCEE-C-------------C--CCSCSCEEEEEECTTCCEEE---EEGGGTEEEE
T ss_pred             CCCEEEEECCCCcEEEEcCCCCccee-e-------------c--cCCCCCceeEEECCCCCEEE---EECCCCEEEE
Confidence            99766666678899999987632111 0             0  01112355677778887555   5555555544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.20  E-value=3.4e-08  Score=98.93  Aligned_cols=200  Identities=9%  Similarity=0.039  Sum_probs=133.8

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      .....+.++++.++|+++++...++.|.+||.. ++............+.++++.++  |.++++...++.|..||.. +
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL--GDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT-S
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCC--CCEEEEecCCCeEEEECCC-C
Confidence            345688999999999988887778999999988 65543222334467899999988  4777776667889999877 2


Q ss_pred             CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004745           97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  176 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (732)
                      ...         ..........+.++++.+++ +++++...++.|..+|.. ++..             .+.+       
T Consensus        93 ~~~---------~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~-------------~~~~-------  141 (300)
T 2qc5_A           93 GFT---------EYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIY-------------EYDL-------  141 (300)
T ss_dssp             CEE---------EEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEE-------------EEEC-------
T ss_pred             CeE---------EecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEE-------------EccC-------
Confidence            210         11222234668899999854 777776667889999876 4310             0100       


Q ss_pred             ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004745          177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  256 (732)
Q Consensus       177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  256 (732)
                          +.....+.++++.++ ++++++...++.|..||. +++.. .+.            .      ..... .+..+++
T Consensus       142 ----~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~-~~~------------~------~~~~~-~~~~i~~  195 (300)
T 2qc5_A          142 ----PNKGSYPAFITLGSD-NALWFTENQNNSIGRITN-TGKLE-EYP------------L------PTNAA-APVGITS  195 (300)
T ss_dssp             ----SSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEE-EEE------------C------SSTTC-CEEEEEE
T ss_pred             ----CCCCCCceeEEECCC-CCEEEEecCCCeEEEECC-CCcEE-Eee------------C------CCCCC-CcceEEE
Confidence                112236788999998 677666666788999998 33211 110            0      01111 4788999


Q ss_pred             cCCCCEEEEEecCCeEEEEEC
Q 004745          257 SPNGEEVLLSYSGEHVYLMDV  277 (732)
Q Consensus       257 sp~g~~l~~~~~dg~v~iwd~  277 (732)
                      +++|++.++....+.|.+|+.
T Consensus       196 d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          196 GNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             CTTSSEEEEETTTTEEEEECT
T ss_pred             CCCCCEEEEccCCCEEEEEcC
Confidence            999986666656678888876

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.20  E-value=1e-09  Score=125.22  Aligned_cols=65  Identities=12%  Similarity=0.021  Sum_probs=51.8

Q ss_pred             CCCEEEEecCCCcEEEEEcC-cccEEEEEec-CcccEEEEeecCCCCeEE----EecCCCcEEEEcCCCCC
Q 004745          607 RGDYIASGSDDGRWFIWEKQ-TGRLIKMLLG-DEAVVNCVQCHPFDCVVA----TSGIDNTIKIWTPSASV  671 (732)
Q Consensus       607 dg~~lasgs~Dg~i~iWd~~-tg~~~~~l~g-H~~~V~~v~fsp~~~~l~----S~s~D~~i~vW~~~~~~  671 (732)
                      ++.++++...|+..+||.+. +|+.++.+.. +...|..++++|+++.|+    |....++|.+||+.+++
T Consensus       373 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          373 GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            66788999999998888665 5777787876 477899999999998555    34456889999998876

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.17  E-value=6e-09  Score=106.08  Aligned_cols=229  Identities=10%  Similarity=-0.047  Sum_probs=144.7

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC----cCeEEEEEecCCCCCEEEEEE
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS----ANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~----~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      +++++.++. .......++++++++++++...++.|.+||+.+++....+..+..    .....+++ .+  +.++++..
T Consensus        73 t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~--~~lyv~~~  148 (328)
T 3dsm_A           73 TFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YG--KYVYVNCW  148 (328)
T ss_dssp             TCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ET--TEEEEEEC
T ss_pred             ccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-EC--CEEEEEcC
Confidence            456666664 346788999999986555554889999999999998877733321    14567777 33  34445443


Q ss_pred             -CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC----------CcEEEEECCCCCCC
Q 004745           84 -GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----------GTLRQHDFRQGSSC  152 (732)
Q Consensus        84 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d----------g~i~vwd~~~~~~~  152 (732)
                       .++.|.++|+.+...          +..+.. ......++++|++ ++++++..+          +.|.++|..+++..
T Consensus       149 ~~~~~v~viD~~t~~~----------~~~i~~-g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~  216 (328)
T 3dsm_A          149 SYQNRILKIDTETDKV----------VDELTI-GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE  216 (328)
T ss_dssp             TTCCEEEEEETTTTEE----------EEEEEC-SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred             CCCCEEEEEECCCCeE----------EEEEEc-CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEE
Confidence             489999999986421          233332 3345788999955 666665544          78999998876521


Q ss_pred             CCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCc
Q 004745          153 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  232 (732)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  232 (732)
                                  ..+.+          ..+  .....++|+|+ +++|+++..  .|.+||+.+.+.....         
T Consensus       217 ------------~~~~~----------~~g--~~p~~la~~~d-~~~lyv~~~--~v~~~d~~t~~~~~~~---------  260 (328)
T 3dsm_A          217 ------------KQFKF----------KLG--DWPSEVQLNGT-RDTLYWINN--DIWRMPVEADRVPVRP---------  260 (328)
T ss_dssp             ------------EEEEC----------CTT--CCCEEEEECTT-SCEEEEESS--SEEEEETTCSSCCSSC---------
T ss_pred             ------------EEEec----------CCC--CCceeEEEecC-CCEEEEEcc--EEEEEECCCCceeeee---------
Confidence                        00111          101  15689999998 567776654  8999999876532110         


Q ss_pred             cccccccccccCCCccccEEEEEEcCC-CCEEEEE----ecCCeEEEEECCCCCCcceeeecCCCCceeeecc
Q 004745          233 VNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLS----YSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  300 (732)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~i~~l~~sp~-g~~l~~~----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  300 (732)
                         +.      ... ......++++|+ +.+.++.    ..++.|.+||.. ++... .+..+..+..++|..
T Consensus       261 ---~~------~~~-~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~-~i~~G~~P~~~~~~~  321 (328)
T 3dsm_A          261 ---FL------EFR-DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID-EFYVGIIPGAFCWKL  321 (328)
T ss_dssp             ---SB------CCC-SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE-EEEEEESEEEEEEEC
T ss_pred             ---ee------cCC-CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE-EEEeccCcceEEEec
Confidence               00      000 124788999994 5544554    468899999998 54333 333455555565544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.16  E-value=1.8e-10  Score=117.88  Aligned_cols=182  Identities=14%  Similarity=0.081  Sum_probs=129.6

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----------eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745           20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~-----------~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      .+++.+++++...++++|+.+ .++||++...+           .....  .+.. |+.++|  +  ++.|+++ .++.|
T Consensus        38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~--~lp~-V~~l~f--d--~~~L~v~-~~~~l  108 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK--EIPD-VIFVCF--H--GDQVLVS-TRNAL  108 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTT-EEEEEE--E--TTEEEEE-ESSEE
T ss_pred             ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe--eCCC-eeEEEE--C--CCEEEEE-cCCcE
Confidence            379999999999999999987 46779865433           11222  4566 999999  5  4888888 88999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      ++||+.....          ......|...+.++.+.+.  + ++++..||.|.+||+.++...                
T Consensus       109 ~v~dv~sl~~----------~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~----------------  159 (388)
T 1xip_A          109 YSLDLEELSE----------FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTK----------------  159 (388)
T ss_dssp             EEEESSSTTC----------EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEE----------------
T ss_pred             EEEEchhhhc----------cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCccc----------------
Confidence            9999986431          3345566777888887652  3 888899999999999876521                


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC--CcccccCCCCCCcccccccccccc-CC
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSE-HG  245 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~  245 (732)
                             .      ....|++++|+|+ |  ++.|..||++++|+....+.  ...+.            .|..+.+ .+
T Consensus       160 -------~------~~~~Vs~v~WSpk-G--~~vg~~dg~i~~~~~~~~~~~~k~~I~------------~Pp~~~~~~~  211 (388)
T 1xip_A          160 -------Q------LAQNVTSFDVTNS-Q--LAVLLKDRSFQSFAWRNGEMEKQFEFS------------LPSELEELPV  211 (388)
T ss_dssp             -------E------EEESEEEEEECSS-E--EEEEETTSCEEEEEEETTEEEEEEEEC------------CCHHHHTSCT
T ss_pred             -------c------ccCCceEEEEcCC-c--eEEEEcCCcEEEEcCCCccccccceec------------CCcccccccC
Confidence                   0      2237999999998 5  78899999999998876542  21221            0111110 12


Q ss_pred             CccccEEEEEEcCCCCEEEEEec
Q 004745          246 RSSLHLTHVTFSPNGEEVLLSYS  268 (732)
Q Consensus       246 ~~~~~i~~l~~sp~g~~l~~~~~  268 (732)
                      |. ..|.++.|.+++.+|++=..
T Consensus       212 ~~-~~V~sI~wl~~~~flv~y~~  233 (388)
T 1xip_A          212 EE-YSPLSVTILSPQDFLAVFGN  233 (388)
T ss_dssp             TT-SEEEEEEESSSSEEEEEEEC
T ss_pred             CC-eeEEEEEEecCCeEEEEEcC
Confidence            33 36999999999998876433

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.13  E-value=1.5e-08  Score=104.74  Aligned_cols=235  Identities=11%  Similarity=0.045  Sum_probs=144.6

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeeEEEEccC------CCcCeEEEEEe
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------HSANVFCTKFV   71 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~i~vWd~~~~~~~~~~~~~------h~~~V~~~~~s   71 (732)
                      +++++.++..-..+  .++|+|||++|+.+.          .++.|.+||..+.+.+.++..+      +......+.|+
T Consensus        56 t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s  133 (373)
T 2mad_H           56 SGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT  133 (373)
T ss_pred             CCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEEC
Confidence            44555555543344  899999999988875          3678999999999888877332      01234589999


Q ss_pred             cCCCCCEEEEEEC--CCcEEEEEcCCCCCCCCCCCCCCCcee-eccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004745           72 PETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  148 (732)
Q Consensus        72 ~~~~g~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  148 (732)
                      |+  |++|+.+..  ++.|.++| .+.+.          +.. +. ...   ++.+.|++.+.+++.+.||.+.++|. +
T Consensus       134 pD--G~~l~v~n~~~~~~v~viD-~t~~~----------~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~  195 (373)
T 2mad_H          134 PN--NADLLFFQFAAGPAVGLVV-QGGSS----------DDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A  195 (373)
T ss_pred             CC--CCEEEEEecCCCCeEEEEE-CCCCE----------EeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence            99  588887764  57899999 76421          223 22 111   24556766677788888999999998 6


Q ss_pred             CCCCCCCC-----CCCc-----------c---------cceEEeeccCCccccccCC---C-------CCccceEEEEec
Q 004745          149 GSSCPPAG-----SSHQ-----------E---------CRNILLDLRCGAKRSLADP---P-------KQTLSLKSCDIS  193 (732)
Q Consensus       149 ~~~~~~~~-----~~~~-----------~---------~~~~~~~~~~~~~~~~~~~---~-------~~~~~v~~i~~~  193 (732)
                      ++......     ....           .         ....++++..+....+...   .       -.......+.++
T Consensus       196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s  275 (373)
T 2mad_H          196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL  275 (373)
T ss_pred             CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC
Confidence            54331100     0000           0         0111122211110000000   0       001123347789


Q ss_pred             CCCCCEEEEEeC----------CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-E
Q 004745          194 STRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-E  262 (732)
Q Consensus       194 ~~~~~~l~tg~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~  262 (732)
                      |+ ++.++++..          ++.|.++|+.+.+.+..+.                   .+.   ...+++|+|||+ +
T Consensus       276 ~d-~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-------------------~g~---~p~~i~~s~Dg~~~  332 (373)
T 2mad_H          276 KS-SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-------------------LGH---DVDAISVAQDGGPD  332 (373)
T ss_pred             CC-CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-------------------CCC---CcCeEEECCCCCeE
Confidence            98 455555432          3579999999887655442                   111   367899999999 7


Q ss_pred             EEEEe-cCCeEEEEECCCCCCcce
Q 004745          263 VLLSY-SGEHVYLMDVNHAGGRAM  285 (732)
Q Consensus       263 l~~~~-~dg~v~iwd~~~~~~~~~  285 (732)
                      ++++. .++.|.+||+.+.+....
T Consensus       333 l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          333 LYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEEEcCCCCeEEEEECCCCCEEee
Confidence            88877 489999999999765443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.12  E-value=2.7e-09  Score=105.32  Aligned_cols=192  Identities=8%  Similarity=0.033  Sum_probs=135.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC-cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCC
Q 004745           30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP  108 (732)
Q Consensus        30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~-~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  108 (732)
                      .+++|++++.|+.|.+||.++++.+.++ ..+. ..+.++.++|+  |++|+  +.++.|..||. ++          +.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~-~~~~~~~~~~~~~~pd--G~ilv--s~~~~V~~~d~-~G----------~~   67 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEY-PLEKGWECNSVAATKA--GEILF--SYSKGAKMITR-DG----------RE   67 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEE-ECCTTCCCCEEEECTT--SCEEE--ECBSEEEEECT-TS----------CE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEe-CCCccCCCcCeEECCC--CCEEE--eCCCCEEEECC-CC----------CE
Confidence            4578999999999999999999999999 4554 57899999998  58888  45788999998 43          22


Q ss_pred             ceeeccc-cCceeEEEEecCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccc
Q 004745          109 SALYQCH-TRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS  186 (732)
Q Consensus       109 ~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (732)
                      +..+..+ ...+.++.+.|++ +++++.+. ++.|..+|. +++.              ++.......     ...+...
T Consensus        68 ~W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~--------------l~~~~~~~~-----~~~~~~~  126 (276)
T 3no2_A           68 LWNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEV--------------LSKTEFETG-----IERPHAQ  126 (276)
T ss_dssp             EEEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCE--------------EEEEEECCS-----CSSGGGS
T ss_pred             EEEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCE--------------EEEEeccCC-----CCccccc
Confidence            5555543 3468889999955 78877776 677777775 4431              121110000     0011112


Q ss_pred             eEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEE
Q 004745          187 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS  266 (732)
Q Consensus       187 v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~  266 (732)
                      ...+.+.++ ++++++...++.|..||.. ++.+.++..                    . . .+.++.+.++|++++++
T Consensus       127 ~~~v~~~~~-G~~lv~~~~~~~v~~~d~~-G~~~w~~~~--------------------~-~-~~~~~~~~~~g~~~v~~  182 (276)
T 3no2_A          127 FRQINKNKK-GNYLVPLFATSEVREIAPN-GQLLNSVKL--------------------S-G-TPFSSAFLDNGDCLVAC  182 (276)
T ss_dssp             CSCCEECTT-SCEEEEETTTTEEEEECTT-SCEEEEEEC--------------------S-S-CCCEEEECTTSCEEEEC
T ss_pred             ccCceECCC-CCEEEEecCCCEEEEECCC-CCEEEEEEC--------------------C-C-CccceeEcCCCCEEEEe
Confidence            334567787 7899999999999999998 765544321                    1 1 24557788999999988


Q ss_pred             ecCCeEEEEECCCCCC
Q 004745          267 YSGEHVYLMDVNHAGG  282 (732)
Q Consensus       267 ~~dg~v~iwd~~~~~~  282 (732)
                      +.++.|..+|..+++.
T Consensus       183 ~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          183 GDAHCFVQLNLESNRI  198 (276)
T ss_dssp             BTTSEEEEECTTTCCE
T ss_pred             CCCCeEEEEeCcCCcE
Confidence            8888999999998654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.11  E-value=1.3e-08  Score=100.33  Aligned_cols=212  Identities=11%  Similarity=0.127  Sum_probs=145.6

Q ss_pred             hccccEeeeccC-CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-C
Q 004745            8 RLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-D   85 (732)
Q Consensus         8 ~~~~~~~l~~h~-~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-d   85 (732)
                      +.+.+..+..+. ..+.++.++|+|++|+  +.++.|..||. +++.+.++..+....+.++.+.|+  |+++++.+. +
T Consensus        24 tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~d--G~~lv~~~~~~   98 (276)
T 3no2_A           24 TKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPD--GNALVAWCGHP   98 (276)
T ss_dssp             TTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTT--SCEEEEEESTT
T ss_pred             CCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCC--CCEEEEecCCC
Confidence            566777777766 5789999999999888  35778999998 899999884333457889999999  588988877 7


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeec------cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH  159 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  159 (732)
                      +.|..+|..   ++.        +..+.      .+......+++.++ ++++++...++.|..||.. ++         
T Consensus        99 ~~v~~vd~~---Gk~--------l~~~~~~~~~~~~~~~~~~v~~~~~-G~~lv~~~~~~~v~~~d~~-G~---------  156 (276)
T 3no2_A           99 STILEVNMK---GEV--------LSKTEFETGIERPHAQFRQINKNKK-GNYLVPLFATSEVREIAPN-GQ---------  156 (276)
T ss_dssp             EEEEEECTT---SCE--------EEEEEECCSCSSGGGSCSCCEECTT-SCEEEEETTTTEEEEECTT-SC---------
T ss_pred             CEEEEEeCC---CCE--------EEEEeccCCCCcccccccCceECCC-CCEEEEecCCCEEEEECCC-CC---------
Confidence            777777653   221        22221      12234455677884 4899999999999999987 65         


Q ss_pred             cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccc
Q 004745          160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  239 (732)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (732)
                           .+|....+            ....++.+.++ ++.++++..++.|..+|..+++.+-++....            
T Consensus       157 -----~~w~~~~~------------~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~------------  206 (276)
T 3no2_A          157 -----LLNSVKLS------------GTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRRVNAND------------  206 (276)
T ss_dssp             -----EEEEEECS------------SCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEEEEGGG------------
T ss_pred             -----EEEEEECC------------CCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEEecCCC------------
Confidence                 23433221            13345677787 7889888888899999999887665542110            


Q ss_pred             ccccCCCccccEEEEEEcCCCCEEEEEecC--------CeEEEEECCC
Q 004745          240 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--------EHVYLMDVNH  279 (732)
Q Consensus       240 ~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d--------g~v~iwd~~~  279 (732)
                       .  .+..-..+..++..++|..+++....        +..+++++..
T Consensus       207 -~--~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~  251 (276)
T 3no2_A          207 -I--EGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS  251 (276)
T ss_dssp             -S--BSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT
T ss_pred             -C--CCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC
Confidence             0  00111137889999999988777421        2445666643

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.10  E-value=3.9e-08  Score=100.13  Aligned_cols=194  Identities=11%  Similarity=0.054  Sum_probs=120.6

Q ss_pred             EEEEcCCCCEEEEEeC-----CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE----------CCCcE
Q 004745           24 AISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEV   88 (732)
Q Consensus        24 ~l~~s~dg~~lasg~~-----dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~----------~dg~i   88 (732)
                      .....|+++.+.+...     ++.|.+.|..+++.+.++..+. .+ . +.++|+  |++++.++          .++.|
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~-~P-~-va~spD--G~~lyVan~~~~r~~~G~~~~~V  111 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-LP-N-PVVADD--GSFIAHASTVFSRIARGERTDYV  111 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-SC-E-EEECTT--SSCEEEEEEEEEETTEEEEEEEE
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC-CC-c-EEECCC--CCEEEEEcccccccccCCCCCEE
Confidence            3455789998887765     6799999999999999994443 33 4 999999  47666654          36789


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccc-------cCceeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCC
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSH  159 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~  159 (732)
                      .+||..+...          +..+.--       ......++|+|++ ++++.+..  ++.|.++|+.+.+..       
T Consensus       112 sviD~~t~~v----------~~~I~v~~g~r~~~g~~P~~~a~spDG-k~lyVan~~~~~~VsVID~~t~~vv-------  173 (386)
T 3sjl_D          112 EVFDPVTLLP----------TADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFK-------  173 (386)
T ss_dssp             EEECTTTCCE----------EEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEE-------
T ss_pred             EEEECCCCeE----------EEEEECCCccccccCCCCceEEEcCCC-CEEEEEEcCCCCeEEEEECCCCcEE-------
Confidence            9999987431          3333210       1245679999976 65555543  689999999988622       


Q ss_pred             cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCccccccc
Q 004745          160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCP  238 (732)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~  238 (732)
                             -        .+. .++      +....|.+.+.+++.+.||.+.+.++.. ++......         ..+. 
T Consensus       174 -------~--------tI~-v~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~---------~~~~-  221 (386)
T 3sjl_D          174 -------R--------MLD-VPD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT---------EVFH-  221 (386)
T ss_dssp             -------E--------EEE-CCS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC---------CCCS-
T ss_pred             -------E--------EEE-CCC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec---------ceec-
Confidence                   0        000 000      0112244456777888899998898876 33211000         0000 


Q ss_pred             cccccCCCccccE-EEEEEc-CCCCEEEEEecCCeEEEEECCCC
Q 004745          239 MHLSEHGRSSLHL-THVTFS-PNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       239 ~~~~~~~~~~~~i-~~l~~s-p~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                           ... . ++ ....|. ++|++++ .+.+|.|++.|+.+.
T Consensus       222 -----~~~-~-~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~  257 (386)
T 3sjl_D          222 -----PED-E-FLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG  257 (386)
T ss_dssp             -----CTT-S-CBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred             -----ccc-c-cccccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence                 000 0 11 123564 6786555 666899999998773

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.09  E-value=8.9e-09  Score=105.58  Aligned_cols=118  Identities=16%  Similarity=0.120  Sum_probs=79.7

Q ss_pred             CceeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeeEEEEc------cCCCcCeEEEEEecCCCCCEEEEEEC-----CC
Q 004745           20 GCVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSIE------TGHSANVFCTKFVPETSDELVVSGAG-----DA   86 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~--~dg~i~vWd~~~~~~~~~~~------~~h~~~V~~~~~s~~~~g~~l~s~~~-----dg   86 (732)
                      .....++++|+|+++++..  .++.++||.+.+++.. .+.      ..|-..+.+++++++  |+++++-..     ++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~--g~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGN--GIVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSS--SEEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCC--CcEEEEcCCCCcCCCC
Confidence            7889999999999988864  2343666665555433 221      134567999999998  465555433     57


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeec------cccCceeEEEEecCCCcEEEEEe---CCCcEEEEECCCCC
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGS  150 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~~l~s~s---~dg~i~vwd~~~~~  150 (732)
                      .|.+||+.++..          +..+.      .+...+..+++.|+++..+++-.   .++.|.+||+.+++
T Consensus        94 ~i~~~d~~tg~~----------~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~  156 (343)
T 2qe8_A           94 KLVAWDTLNNQL----------SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL  156 (343)
T ss_dssp             EEEEEETTTTEE----------EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred             eEEEEECCCCeE----------EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence            899999986431          12221      12345689999986656666665   67899999998765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.05  E-value=2.2e-08  Score=104.91  Aligned_cols=219  Identities=9%  Similarity=0.016  Sum_probs=136.1

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC--cEEEEEcCCCC
Q 004745           20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFS   97 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg--~i~vwd~~~~~   97 (732)
                      .....|+|+++++++++...++.|++||..+++..... .... ... ++|+|+  ++.|+.+..++  .|.+|+.....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-~~~~-~~~-ia~~~~--g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-PGFK-GGK-PAVTKD--KQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-ETCC-BCB-CEECTT--SSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-ccCC-CCc-eeEecC--CCcEEEEecCCCceEEEEEcCCCc
Confidence            46779999999998888877899999999888776555 3322 233 999999  47888887766  78888876421


Q ss_pred             CCCCCCCCCCCceee----ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745           98 GRGLDDNAITPSALY----QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~----~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                      .          ...+    ......+.+++++|+++.+++ +..++.|+.||..++...            .+.....  
T Consensus       206 ~----------~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~------------~~~~~~~--  260 (409)
T 3hrp_A          206 A----------PTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT------------LIKQLEL--  260 (409)
T ss_dssp             C----------EEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE------------EEEECCC--
T ss_pred             e----------eEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE------------EEecccc--
Confidence            1          1122    214466788999996545554 667889999998765411            1100000  


Q ss_pred             cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004745          174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  253 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (732)
                           .......+...++|+|+++.++++-..++.|+.|+....  +..+.......    .+... ......-. ....
T Consensus       261 -----~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~----g~~dg-~~~~~~~~-~P~g  327 (409)
T 3hrp_A          261 -----SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQK----TVQDG-LREEALFA-QPNG  327 (409)
T ss_dssp             -----CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCC----SCBCE-EGGGCBCS-SEEE
T ss_pred             -----cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCC----CcCCC-cccccEeC-CCeE
Confidence                 000000011289999965777777777899999997643  11110000000    00000 00000011 3789


Q ss_pred             EEEcCCCCEEEEEe-cCCeEEEEECCCCC
Q 004745          254 VTFSPNGEEVLLSY-SGEHVYLMDVNHAG  281 (732)
Q Consensus       254 l~~sp~g~~l~~~~-~dg~v~iwd~~~~~  281 (732)
                      ++++|+|+++++-+ .++.|+.|++.++.
T Consensus       328 ia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          328 MTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             EEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             EEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            99999999777777 78999999987643

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.05  E-value=2.9e-08  Score=103.05  Aligned_cols=190  Identities=12%  Similarity=0.047  Sum_probs=117.3

Q ss_pred             CCCCEEEEEeC-C----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE----------CCCcEEEEEc
Q 004745           29 SKGSLLISGSD-D----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL   93 (732)
Q Consensus        29 ~dg~~lasg~~-d----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~----------~dg~i~vwd~   93 (732)
                      ++++++.+... +    +.|.++|..+++.+.++..+. .+  .+.++|++  ++++.+.          .++.|.++|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDg--k~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDG--SFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTTS--SCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCCC--CEEEEEeccccccccCCCCCEEEEEEC
Confidence            46776665544 2    699999999999999995443 34  89999994  6666654          4678999999


Q ss_pred             CCCCCCCCCCCCCCCceeecc-------ccCceeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccce
Q 004745           94 SRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      .+.+.          +..+.-       .......+.|+|++ ++++.+..  ++.|.+.|+.+.+..            
T Consensus       157 ~t~~v----------v~~I~v~g~~r~~~g~~P~~~~~spDG-k~lyV~n~~~~~~VsVID~~t~kvv------------  213 (426)
T 3c75_H          157 VTFLP----------IADIELPDAPRFLVGTYQWMNALTPDN-KNLLFYQFSPAPAVGVVDLEGKTFD------------  213 (426)
T ss_dssp             TTCCE----------EEEEEETTCCCCCBSCCGGGSEECTTS-SEEEEEECSSSCEEEEEETTTTEEE------------
T ss_pred             CCCcE----------EEEEECCCccccccCCCcceEEEcCCC-CEEEEEecCCCCeEEEEECCCCeEE------------
Confidence            87432          233221       11235578999966 66666553  578999999987622            


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                        -.        +.. .+      +....|++...+++.+.||.+.+.+..+.+......         ..+.      .
T Consensus       214 --~~--------I~v-~g------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~---------~~~~------v  261 (426)
T 3c75_H          214 --RM--------LDV-PD------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT---------EVFH------T  261 (426)
T ss_dssp             --EE--------EEC-CS------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC---------CCCS------C
T ss_pred             --EE--------EEc-CC------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee---------eeec------c
Confidence              00        000 00      022334434566677778888777774443221100         0000      0


Q ss_pred             CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      +... -...+.|.+++..++..+..+.|.+.|+..
T Consensus       262 ~~~p-~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~  295 (426)
T 3c75_H          262 EDEL-LINHPAFSLRSGRLVWPTYTGKIFQADLTA  295 (426)
T ss_dssp             TTSC-BCSCCEECTTTCEEEEEBTTSEEEEEEECS
T ss_pred             CCCc-eeeEeeecCCCCEEEEEeCCCcEEEEeccC
Confidence            0000 012357899998888888889999999876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.01  E-value=2.5e-08  Score=100.81  Aligned_cols=205  Identities=11%  Similarity=0.129  Sum_probs=131.5

Q ss_pred             cCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeEEE-Ecc--C-CCcCeEEEEEecCCCCCEEEEEECC-------
Q 004745           18 HQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHS-IET--G-HSANVFCTKFVPETSDELVVSGAGD-------   85 (732)
Q Consensus        18 h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~~~~~-~~~--~-h~~~V~~~~~s~~~~g~~l~s~~~d-------   85 (732)
                      +...+.+++++++ |+++++.. .+.|.+||.. ++.... ...  . ....+.+++++++  |+++++...+       
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~  144 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADY  144 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCC
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccc
Confidence            5577899999999 77666554 4479999988 665433 211  1 1245889999998  5777776554       


Q ss_pred             --------CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe----cCCCcEEEEEeCCCcEEEEECC-CCCCC
Q 004745           86 --------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE----VGNPHVVWSASEDGTLRQHDFR-QGSSC  152 (732)
Q Consensus        86 --------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----p~~~~~l~s~s~dg~i~vwd~~-~~~~~  152 (732)
                              +.|..|+..   +.         ...+..+......++++    |++..++++...++.|.+||+. .++. 
T Consensus       145 ~~~~~~~~~~l~~~~~~---g~---------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~-  211 (314)
T 1pjx_A          145 TRSMQEKFGSIYCFTTD---GQ---------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI-  211 (314)
T ss_dssp             CBTTSSSCEEEEEECTT---SC---------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE-
T ss_pred             cccccCCCCeEEEECCC---CC---------EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc-
Confidence                    456666544   11         22223344557889999    8653445555677899999976 2210 


Q ss_pred             CCCCCCCcccceEEeeccCCccccccCCCCCc-cceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCC
Q 004745          153 PPAGSSHQECRNILLDLRCGAKRSLADPPKQT-LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  231 (732)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~  231 (732)
                              .....+..           ...+. ..+..++++++ ++++++...++.|.+||..+++.+..+.       
T Consensus       212 --------~~~~~~~~-----------~~~~~~~~p~~i~~d~~-G~l~v~~~~~~~i~~~d~~~g~~~~~~~-------  264 (314)
T 1pjx_A          212 --------ENKKVWGH-----------IPGTHEGGADGMDFDED-NNLLVANWGSSHIEVFGPDGGQPKMRIR-------  264 (314)
T ss_dssp             --------EEEEEEEE-----------CCCCSSCEEEEEEEBTT-CCEEEEEETTTEEEEECTTCBSCSEEEE-------
T ss_pred             --------ccceEEEE-----------CCCCCCCCCCceEECCC-CCEEEEEcCCCEEEEEcCCCCcEeEEEe-------
Confidence                    00001111           11122 35678999998 7788887788999999988654433221       


Q ss_pred             ccccccccccccCCCccccEEEEEEcCCCCEEEEEe-cCCeEEEEECCCC
Q 004745          232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHA  280 (732)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-~dg~v~iwd~~~~  280 (732)
                                   .+.. .+.+++|+|+|+.|++++ .++.|..|++...
T Consensus       265 -------------~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          265 -------------CPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             -------------CSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             -------------CCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence                         1112 489999999999666554 4689999998763

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.01  E-value=4.2e-08  Score=99.11  Aligned_cols=212  Identities=8%  Similarity=0.050  Sum_probs=130.3

Q ss_pred             eeccCCceeEEEEcCCCCEEEE-------EeCCCcEEEEeCCCCeeEEEEc---cCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745           15 LEGHQGCVNAISWNSKGSLLIS-------GSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg~~las-------g~~dg~i~vWd~~~~~~~~~~~---~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      +...-....+++|+++|+++++       +..++.|.+||..+++......   .++...+.++.++++. |.+++ ++.
T Consensus        13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-g~l~v-~~~   90 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA-NQLFV-ADM   90 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS-SEEEE-EET
T ss_pred             hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCC-CcEEE-EEC
Confidence            3444566789999999998887       5678899999988887653321   1255678999999982 24444 444


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCc-ee-ec-cccCceeEEEEecCCCcEEEEEeCC---------------CcEEEEEC
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPS-AL-YQ-CHTRRVKKLAVEVGNPHVVWSASED---------------GTLRQHDF  146 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~-~~-~~-~h~~~v~~l~~~p~~~~~l~s~s~d---------------g~i~vwd~  146 (732)
                      .+.|.+||.. +....        + .. .. .....+.++++.+++ +++++...+               +.|..||.
T Consensus        91 ~~~l~~~d~~-g~~~~--------~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (314)
T 1pjx_A           91 RLGLLVVQTD-GTFEE--------IAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTT  160 (314)
T ss_dssp             TTEEEEEETT-SCEEE--------CCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred             CCCEEEEeCC-CCEEE--------EEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECC
Confidence            5578899987 32110        0 00 01 112458899999955 777666554               45666665


Q ss_pred             CCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEec----CCCCCE-EEEEeCCCeEEEEECC-CCCCC
Q 004745          147 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHL-LLVGGSDAFARLYDRR-MLPPL  220 (732)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~-l~tg~~dg~v~iwd~~-~~~~~  220 (732)
                      . ++.            ..+.              ........++++    |+ ++. +++...++.|.+||+. +++ +
T Consensus       161 ~-g~~------------~~~~--------------~~~~~~~~i~~~~~~d~d-g~~l~v~~~~~~~i~~~~~~~~g~-~  211 (314)
T 1pjx_A          161 D-GQM------------IQVD--------------TAFQFPNGIAVRHMNDGR-PYQLIVAETPTKKLWSYDIKGPAK-I  211 (314)
T ss_dssp             T-SCE------------EEEE--------------EEESSEEEEEEEECTTSC-EEEEEEEETTTTEEEEEEEEETTE-E
T ss_pred             C-CCE------------EEec--------------cCCCCcceEEEecccCCC-CCEEEEEECCCCeEEEEECCCCCc-c
Confidence            3 220            0000              011245778899    98 544 4555568899999976 221 1


Q ss_pred             cccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          221 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      ...       .....+       .++....+..++++++|+++++...++.|.+||..+++
T Consensus       212 ~~~-------~~~~~~-------~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~  258 (314)
T 1pjx_A          212 ENK-------KVWGHI-------PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ  258 (314)
T ss_dssp             EEE-------EEEEEC-------CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred             ccc-------eEEEEC-------CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc
Confidence            000       000000       11110137889999999988877788999999988644

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.99  E-value=5.2e-08  Score=99.19  Aligned_cols=238  Identities=11%  Similarity=0.090  Sum_probs=143.9

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeeEEEEccCC------CcCeEEEEEe
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGH------SANVFCTKFV   71 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~i~vWd~~~~~~~~~~~~~h------~~~V~~~~~s   71 (732)
                      +++.+.++..-..+  .++++|||++|+++.          .++.|.+||..+++.+.++..+.      ......+.|+
T Consensus        68 t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s  145 (386)
T 3sjl_D           68 AGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT  145 (386)
T ss_dssp             TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred             CCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc
Confidence            45666666654555  499999999887765          36789999999999988874332      1245679999


Q ss_pred             cCCCCCEEEEEEC--CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC-
Q 004745           72 PETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ-  148 (732)
Q Consensus        72 ~~~~g~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-  148 (732)
                      |+  |++++.+..  ++.|.++|+.+.+.          +..+.- .+   +....|.+.+.+++.+.||.+.+.++.+ 
T Consensus       146 pD--Gk~lyVan~~~~~~VsVID~~t~~v----------v~tI~v-~g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~  209 (386)
T 3sjl_D          146 PD--GKTLLFYQFSPAPAVGVVDLEGKAF----------KRMLDV-PD---CYHIFPTAPDTFFMHCRDGSLAKVAFGTE  209 (386)
T ss_dssp             TT--SSEEEEEECSSSCEEEEEETTTTEE----------EEEEEC-CS---EEEEEEEETTEEEEEETTSCEEEEECCSS
T ss_pred             CC--CCEEEEEEcCCCCeEEEEECCCCcE----------EEEEEC-CC---cceeecCCCceeEEECCCCCEEEEECCCC
Confidence            99  588877764  68999999997421          333321 11   1122354556777888888888888866 


Q ss_pred             CCCCC---CCC-C------CCc----ccceEEeeccCCccccccCCCC--------------------CccceEEEEecC
Q 004745          149 GSSCP---PAG-S------SHQ----ECRNILLDLRCGAKRSLADPPK--------------------QTLSLKSCDISS  194 (732)
Q Consensus       149 ~~~~~---~~~-~------~~~----~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~v~~i~~~~  194 (732)
                      ++...   ..+ .      .+.    ..-..+|....+....+.....                    .......+++++
T Consensus       210 g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~  289 (386)
T 3sjl_D          210 GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR  289 (386)
T ss_dssp             SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred             CeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence            33210   000 0      000    0011222222221111110000                    011222467788


Q ss_pred             CCCCEEEEEeC----------CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EE
Q 004745          195 TRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EV  263 (732)
Q Consensus       195 ~~~~~l~tg~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l  263 (732)
                      + ++.+++...          .+.|.++|+.+.+.+..+..                      +..+++|+++||++ +|
T Consensus       290 ~-~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v----------------------g~~~~~lavs~D~~~~l  346 (386)
T 3sjl_D          290 A-LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----------------------GHEIDSINVSQDEKPLL  346 (386)
T ss_dssp             T-TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------------------EEEECEEEECSSSSCEE
T ss_pred             C-CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC----------------------CCCcceEEECCCCCeEE
Confidence            7 455555432          25799999999876655421                      11478999999997 77


Q ss_pred             EEEec-CCeEEEEECCCCCCccee
Q 004745          264 LLSYS-GEHVYLMDVNHAGGRAMR  286 (732)
Q Consensus       264 ~~~~~-dg~v~iwd~~~~~~~~~~  286 (732)
                      +++.. ++.|.++|..+++....+
T Consensus       347 y~tn~~~~~VsViD~~t~k~~~~i  370 (386)
T 3sjl_D          347 YALSTGDKTLYIHDAESGEELRSV  370 (386)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEe
Confidence            77654 899999999997644433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.94  E-value=6.9e-08  Score=100.21  Aligned_cols=238  Identities=11%  Similarity=0.066  Sum_probs=143.8

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeeEEEEccC------CCcCeEEEEE
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------HSANVFCTKF   70 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~i~vWd~~~~~~~~~~~~~------h~~~V~~~~~   70 (732)
                      .+++.+.++.--..+  .++++|||++|+++.          .++.|.++|..+++.+.++..+      .......+.|
T Consensus       107 ~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~  184 (426)
T 3c75_H          107 STGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL  184 (426)
T ss_dssp             TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE
T ss_pred             CCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE
Confidence            355666666654556  899999999888775          3678999999999998887432      1234567899


Q ss_pred             ecCCCCCEEEEEEC--CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004745           71 VPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  148 (732)
Q Consensus        71 s~~~~g~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  148 (732)
                      +|+  |++++.+..  ++.|.+.|+.+.+.          +..+.- ..   +....|++.+.+++.+.||.+.+.++.+
T Consensus       185 spD--Gk~lyV~n~~~~~~VsVID~~t~kv----------v~~I~v-~g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~  248 (426)
T 3c75_H          185 TPD--NKNLLFYQFSPAPAVGVVDLEGKTF----------DRMLDV-PD---CYHIFPASPTVFYMNCRDGSLARVDFAD  248 (426)
T ss_dssp             CTT--SSEEEEEECSSSCEEEEEETTTTEE----------EEEEEC-CS---EEEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred             cCC--CCEEEEEecCCCCeEEEEECCCCeE----------EEEEEc-CC---ceeeccCCCcEEEEEcCCCCEEEEECCC
Confidence            999  588888764  57899999987421          233321 11   1233444446666777777777777744


Q ss_pred             CCCCC----CCCC--------C--Ccccc----------eEEeeccCCccccccC---C--CC-----CccceEEEEecC
Q 004745          149 GSSCP----PAGS--------S--HQECR----------NILLDLRCGAKRSLAD---P--PK-----QTLSLKSCDISS  194 (732)
Q Consensus       149 ~~~~~----~~~~--------~--~~~~~----------~~~~~~~~~~~~~~~~---~--~~-----~~~~v~~i~~~~  194 (732)
                      ++...    ....        .  .....          ..+++...+....+..   .  ..     .......++++|
T Consensus       249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~  328 (426)
T 3c75_H          249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR  328 (426)
T ss_dssp             TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG
T ss_pred             CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC
Confidence            33210    0000        0  00011          1222222111100000   0  00     001112368899


Q ss_pred             CCCCEEEEEeC----------CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EE
Q 004745          195 TRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EV  263 (732)
Q Consensus       195 ~~~~~l~tg~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l  263 (732)
                      ++ .++++...          ++.|.++|+.+.+.+..+..                      +.....++|+|+|+ ++
T Consensus       329 dg-~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----------------------g~~P~gia~spDg~~~l  385 (426)
T 3c75_H          329 QS-DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL----------------------GHEIDSINVSQDAEPLL  385 (426)
T ss_dssp             GG-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------------------EEEECEEEECCSSSCEE
T ss_pred             CC-CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC----------------------CCCcCeEEEccCCCEEE
Confidence            84 45554431          35799999999877655421                      11377899999999 88


Q ss_pred             EEEe-cCCeEEEEECCCCCCcce
Q 004745          264 LLSY-SGEHVYLMDVNHAGGRAM  285 (732)
Q Consensus       264 ~~~~-~dg~v~iwd~~~~~~~~~  285 (732)
                      +++. .++.|.++|+.+.+....
T Consensus       386 yv~n~~s~~VsVID~~t~kvv~t  408 (426)
T 3c75_H          386 YALSAGTQTLHIYDAATGEELRS  408 (426)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEcCCCCeEEEEECCCCCEEEE
Confidence            8888 489999999999765443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.94  E-value=1e-07  Score=95.38  Aligned_cols=196  Identities=12%  Similarity=0.083  Sum_probs=127.2

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEcc--C-CCcCeEEEEEecCCCCCEEEEEECC---------
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET--G-HSANVFCTKFVPETSDELVVSGAGD---------   85 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~--~-h~~~V~~~~~s~~~~g~~l~s~~~d---------   85 (732)
                      +...+.+++++++|+++++.  ++.|.+||..+++.......  . ....+++++++|+  |+++++....         
T Consensus        52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d--G~l~~~~~~~~~~~~~~~~  127 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA--GRYFAGTMAEETAPAVLER  127 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT--SCEEEEEEECCSBTTBCCT
T ss_pred             CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC--CCEEEecCCcccccccccC
Confidence            45789999999999966554  56799999988765433211  1 2345889999998  5766655332         


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC--CCCCCCCCCCCCcccc
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QGSSCPPAGSSHQECR  163 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~  163 (732)
                      ..-.||.+... +.         +..+..+....+.++|+|++..++++.+.++.|.+||+.  ++..         ...
T Consensus       128 ~~~~l~~~d~~-g~---------~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~---------~~~  188 (297)
T 3g4e_A          128 HQGALYSLFPD-HH---------VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI---------SNR  188 (297)
T ss_dssp             TCEEEEEECTT-SC---------EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE---------EEE
T ss_pred             CCcEEEEEECC-CC---------EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc---------cCc
Confidence            33466666532 11         222333445678999999775566677778899999974  3321         001


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                      ..+..+           .........++++++ +++.++...++.|.+||..+++.+..+.                   
T Consensus       189 ~~~~~~-----------~~~~~~p~g~~~d~~-G~lwva~~~~~~v~~~d~~tG~~~~~i~-------------------  237 (297)
T 3g4e_A          189 RSVYKL-----------EKEEQIPDGMCIDAE-GKLWVACYNGGRVIRLDPVTGKRLQTVK-------------------  237 (297)
T ss_dssp             EEEEEC-----------CGGGCEEEEEEEBTT-SCEEEEEETTTEEEEECTTTCCEEEEEE-------------------
T ss_pred             EEEEEC-----------CCCCCCCCeeEECCC-CCEEEEEcCCCEEEEEcCCCceEEEEEE-------------------
Confidence            111111           112235678999998 7788888788899999998776554331                   


Q ss_pred             CCCccccEEEEEEc-CCCCEEEEEecC
Q 004745          244 HGRSSLHLTHVTFS-PNGEEVLLSYSG  269 (732)
Q Consensus       244 ~~~~~~~i~~l~~s-p~g~~l~~~~~d  269 (732)
                       .+.. .+++++|. |+++.|++++..
T Consensus       238 -~p~~-~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          238 -LPVD-KTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             -CSSS-BEEEEEEESGGGCEEEEEEBC
T ss_pred             -CCCC-CceEEEEeCCCCCEEEEEcCC
Confidence             1111 48999998 898888777653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.93  E-value=1.5e-07  Score=94.27  Aligned_cols=215  Identities=12%  Similarity=0.079  Sum_probs=129.6

Q ss_pred             cEeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004745           12 ERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL   90 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v   90 (732)
                      ...+..+..---+..|+|+ +.++++...++.|..||..+++.. .+  .....+.+++++|+  |+++++ . ++.|.+
T Consensus         5 ~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~d--G~l~v~-~-~~~l~~   77 (297)
T 3g4e_A            5 ECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQS--GGYVAT-I-GTKFCA   77 (297)
T ss_dssp             EEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTT--SSEEEE-E-TTEEEE
T ss_pred             EEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCC--CCEEEE-E-CCeEEE
Confidence            3345555556678999995 456667777899999999887653 33  24567999999998  465554 4 567999


Q ss_pred             EEcCCCCCCCCCCCCCCCceeec-c-ccCceeEEEEecCCCcEEEEEeCC---------CcEEEEECCCCCCCCCCCCCC
Q 004745           91 FNLSRFSGRGLDDNAITPSALYQ-C-HTRRVKKLAVEVGNPHVVWSASED---------GTLRQHDFRQGSSCPPAGSSH  159 (732)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~l~~~p~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~  159 (732)
                      ||..++....        +.... . ....++.+++.|++ +++++...+         ..-.+|.+......       
T Consensus        78 ~d~~~g~~~~--------~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-------  141 (297)
T 3g4e_A           78 LNWKEQSAVV--------LATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHV-------  141 (297)
T ss_dssp             EETTTTEEEE--------EEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-------
T ss_pred             EECCCCcEEE--------EEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCE-------
Confidence            9987532111        11111 0 12457899999965 666544221         23345554322110       


Q ss_pred             cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC--CCCCCcccccCCCCCCcccccc
Q 004745          160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFC  237 (732)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~  237 (732)
                          ..+.              ........++|+|++..++++.+.++.|.+||+.  ++.. ...       +.+..+ 
T Consensus       142 ----~~~~--------------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~-~~~-------~~~~~~-  194 (297)
T 3g4e_A          142 ----KKYF--------------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI-SNR-------RSVYKL-  194 (297)
T ss_dssp             ----EEEE--------------EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE-EEE-------EEEEEC-
T ss_pred             ----EEEe--------------eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc-cCc-------EEEEEC-
Confidence                0000              0112457899999943344666668899999974  3321 000       000000 


Q ss_pred             ccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCc
Q 004745          238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  283 (732)
Q Consensus       238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~  283 (732)
                            ... ...+..++++++|++.++....+.|.+||..+++..
T Consensus       195 ------~~~-~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          195 ------EKE-EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL  233 (297)
T ss_dssp             ------CGG-GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred             ------CCC-CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence                  011 114788999999987777777889999999876543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.93  E-value=2.1e-08  Score=114.43  Aligned_cols=203  Identities=11%  Similarity=0.027  Sum_probs=121.4

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc-----
Q 004745           18 HQGCVNAISWNSKGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE-----   87 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~d-----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~-----   87 (732)
                      |...+..++|||||++||.++.+     ..|++||+.+++.+...  .+...+..++|+|+   +.|+.++.++.     
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~~~~~~~~wspD---~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKWVKFSGLAWLGN---DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEEEESCCCEESTT---SEEEEEECCCC-----
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCCceeccEEEECC---CEEEEEEecCcccccc
Confidence            44478899999999999987643     46999999999876542  22223467899998   45666655543     


Q ss_pred             ---------EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCCCCC
Q 004745           88 ---------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCP  153 (732)
Q Consensus        88 ---------i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~~  153 (732)
                               |++|++.+.....      ..+.....+...+..+.|+|++ ++|+..+.+     ..|.+||+.++... 
T Consensus       236 ~~~~~~~~~v~~~~lgt~~~~~------~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~-  307 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLGTPQSAD------QPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIG-  307 (741)
T ss_dssp             ---CCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEEC-
T ss_pred             cccCCCCCEEEEEECCCCchhC------EEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCc-
Confidence                     8899987643211      1122223334458899999966 666655543     37999998765200 


Q ss_pred             CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC----CCeEEEEECCCCC-CCcccccCCC
Q 004745          154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS----DAFARLYDRRMLP-PLTSCQKRMS  228 (732)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~----dg~v~iwd~~~~~-~~~~~~~~~~  228 (732)
                              +...+.           .   +...+... ++|+ +..|+..+.    ++.|.+||+.+.. ....+     
T Consensus       308 --------~~~~l~-----------~---~~~~~~~~-~~~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l-----  358 (741)
T 1yr2_A          308 --------PVTALI-----------P---DLKAQWDF-VDGV-GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV-----  358 (741)
T ss_dssp             --------CCEEEE-----------C---SSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEECSSSSCEEEEE-----
T ss_pred             --------ccEEec-----------C---CCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCccccEEE-----
Confidence                    000111           0   01122222 2366 566766665    3459999987642 11111     


Q ss_pred             CCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          229 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                              .      ..+.. .+..+.++ ++.++++...|+..+||.+.
T Consensus       359 --------~------~~~~~-~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          359 --------V------PESKD-NLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             --------E------CCCSS-EEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             --------e------cCCCC-eEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence                    0      11222 36778887 56677788889887777654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.92  E-value=1.8e-08  Score=113.89  Aligned_cols=207  Identities=14%  Similarity=0.084  Sum_probs=125.9

Q ss_pred             ccCCceeEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc----
Q 004745           17 GHQGCVNAISWNSKGSLLISG-----SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE----   87 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg-----~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~----   87 (732)
                      +|...+..++|||||++||-+     +.+..|+|||+.+++.+....  +......++|+ +  |+.|+.++.+..    
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-D--g~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-G--NEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-T--TTEEEEEESSCCC---
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-C--CCEEEEEEecCccccc
Confidence            456678899999999998843     333679999999998665321  11113578899 8  478888877743    


Q ss_pred             ---------EEEEEcCCCCCCCCCCCCCCCceeecc-ccCceeEEEEecCCCcEEEEEeC---CCcEEEEECCCCCCCCC
Q 004745           88 ---------VRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASE---DGTLRQHDFRQGSSCPP  154 (732)
Q Consensus        88 ---------i~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~---dg~i~vwd~~~~~~~~~  154 (732)
                               |++|++.+.....      ..+..... |...+.++.|+|++..++++.+.   ++.|.++|+.++...  
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~------~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~--  272 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDD------RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP--  272 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGC------EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC--
T ss_pred             ccccCCCcEEEEEECCCCcccc------eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc--
Confidence                     9999988654321      11333333 45567889999977445455543   247999998776411  


Q ss_pred             CCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC---CeEEEEECCCCCCCcccccCCCCCC
Q 004745          155 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPP  231 (732)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~  231 (732)
                              ...           +..   +....... ++++++.+++....+   +.|..+|+.+.... .         
T Consensus       273 --------~~~-----------l~~---~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~---------  319 (693)
T 3iuj_A          273 --------LLT-----------VQG---DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-H---------  319 (693)
T ss_dssp             --------CEE-----------EEC---SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-G---------
T ss_pred             --------eEE-----------EeC---CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-c---------
Confidence                    001           111   11122222 556645555555443   67999999875320 0         


Q ss_pred             ccccccccccccCCCccccEEEEEEcCCCCEEEEEecCC---eEEEEECCCC
Q 004745          232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHA  280 (732)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg---~v~iwd~~~~  280 (732)
                       ++.+       ..+... +.  .|++++++|+....++   .|++|++...
T Consensus       320 -~~~l-------~~~~~~-~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          320 -WRDL-------IPERQQ-VL--TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             -CEEE-------ECCCSS-CE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             -cEEE-------ecCCCC-EE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence             0111       112221 33  8899999888776643   6889988753

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.91  E-value=2.4e-07  Score=97.06  Aligned_cols=164  Identities=13%  Similarity=0.070  Sum_probs=96.9

Q ss_pred             cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC--c
Q 004745           63 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--T  140 (732)
Q Consensus        63 ~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg--~  140 (732)
                      .....++|+++  |+++++...++.|++||+.+..           +..+........ ++|+|++ +.|+++..++  .
T Consensus       131 ~~P~~la~d~~--g~lyv~d~~~~~I~~id~~~g~-----------~~~~~~~~~~~~-ia~~~~g-~~l~~~d~~~~~~  195 (409)
T 3hrp_A          131 KYMWGIAAVGN--NTVLAYQRDDPRVRLISVDDNK-----------VTTVHPGFKGGK-PAVTKDK-QRVYSIGWEGTHT  195 (409)
T ss_dssp             CCEEEEEECST--TEEEEEETTTTEEEEEETTTTE-----------EEEEEETCCBCB-CEECTTS-SEEEEEBSSTTCE
T ss_pred             CCceEEEEeCC--CCEEEEecCCCcEEEEECCCCE-----------EEEeeccCCCCc-eeEecCC-CcEEEEecCCCce
Confidence            45789999988  4777776777999999998532           222222233334 8999965 6776777655  7


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCC
Q 004745          141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  220 (732)
Q Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~  220 (732)
                      |.+++.......           ..+-.+          .......+.+++++|+++. |+++..++.|+.||..+... 
T Consensus       196 I~~~d~~~~~~~-----------~~~g~~----------~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~-  252 (409)
T 3hrp_A          196 VYVYMKASGWAP-----------TRIGQL----------GSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEV-  252 (409)
T ss_dssp             EEEEEGGGTTCE-----------EEEEEC----------CTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCE-
T ss_pred             EEEEEcCCCcee-----------EEeeec----------cchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCE-
Confidence            888887654310           000000          0001235678899996454 54567788999999986531 


Q ss_pred             cccccCCCCCCccccccccccccCCCccc-cEEEEEEcCC-CCEEEEEecCCeEEEEECCC
Q 004745          221 TSCQKRMSPPPCVNYFCPMHLSEHGRSSL-HLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~sp~-g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ..+..             ...  .+.... +...++|+|+ +.++++-..++.|+.|+...
T Consensus       253 ~~~~~-------------~~~--~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g  298 (409)
T 3hrp_A          253 TLIKQ-------------LEL--SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG  298 (409)
T ss_dssp             EEEEE-------------CCC--CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred             EEEec-------------ccc--cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence            11100             000  111111 1238999996 44444445578899887654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.90  E-value=3.5e-07  Score=91.34  Aligned_cols=200  Identities=7%  Similarity=0.002  Sum_probs=135.2

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS   97 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~   97 (732)
                      +...+.+++++++|+++++...++.|..||.. ++............+.++++.++  |.++++...++.|.+||.. +.
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~d~~-g~  130 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPN--GDIWFTEMNGNRIGRITDD-GK  130 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT-CC
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCC--CCEEEEecCCceEEEECCC-CC
Confidence            45678999999999988887778899999976 43322111234567899999998  5777777778899999983 21


Q ss_pred             CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004745           98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  177 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (732)
                      ..         ..........+..+++.+++ +++++...++.|..||. +++..             .+.         
T Consensus       131 ~~---------~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-------------~~~---------  177 (299)
T 2z2n_A          131 IR---------EYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDIT-------------EFK---------  177 (299)
T ss_dssp             EE---------EEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-------------EEE---------
T ss_pred             EE---------EecCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-------------Eee---------
Confidence            10         11122334568999999855 77777666788999998 54311             000         


Q ss_pred             cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004745          178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  257 (732)
Q Consensus       178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  257 (732)
                        .+.....+.+++++++ ++++++...++.|.+||. +++. ..+.            .      ..... .+.+++++
T Consensus       178 --~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~-~~~~------------~------~~~~~-~~~~i~~~  233 (299)
T 2z2n_A          178 --IPTPASGPVGITKGND-DALWFVEIIGNKIGRITT-SGEI-TEFK------------I------PTPNA-RPHAITAG  233 (299)
T ss_dssp             --CSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCE-EEEE------------C------SSTTC-CEEEEEEC
T ss_pred             --CCCCCCcceeEEECCC-CCEEEEccCCceEEEECC-CCcE-EEEE------------C------CCCCC-CceeEEEC
Confidence              0112235788999998 777777667889999998 5431 1110            0      11112 48899999


Q ss_pred             CCCCEEEEEecCCeEEEEECC
Q 004745          258 PNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       258 p~g~~l~~~~~dg~v~iwd~~  278 (732)
                      ++|+++++...++.|.+||..
T Consensus       234 ~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          234 AGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             STTCEEEEETTTTEEEEEETT
T ss_pred             CCCCEEEeccCCceEEEECCC
Confidence            999866665578899999983

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.85  E-value=6.8e-08  Score=98.56  Aligned_cols=233  Identities=10%  Similarity=-0.017  Sum_probs=137.3

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeeEEEEccC-C-----CcCeEEEEE
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG-H-----SANVFCTKF   70 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~i~vWd~~~~~~~~~~~~~-h-----~~~V~~~~~   70 (732)
                      .+++.+.++..-..+  .+.++|||++++++.          .++.|.+||+.+++.+.++..+ .     ......+.|
T Consensus        54 ~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~  131 (368)
T 1mda_H           54 GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN  131 (368)
T ss_dssp             TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred             CCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEE
Confidence            456777777655566  799999999888876          3688999999999999998422 0     134568999


Q ss_pred             ecCCCCCEEEEEEC--CCcEEE--EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004745           71 VPETSDELVVSGAG--DAEVRL--FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  146 (732)
Q Consensus        71 s~~~~g~~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~  146 (732)
                      +|+  |++++.+..  +..|.+  +|+.+             +..+.- ...   +.+.|++...+++.+.|+.+.+.|+
T Consensus       132 SpD--Gk~lyVan~~~~~~v~V~~iD~~t-------------v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~  192 (368)
T 1mda_H          132 CAS--SACLLFFLFGSSAAAGLSVPGASD-------------DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             CTT--SSCEEEEECSSSCEEEEEETTTEE-------------EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEEC
T ss_pred             cCC--CCEEEEEccCCCCeEEEEEEchhh-------------ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEEC
Confidence            999  578887764  467888  88874             111110 011   1233445566666777787777777


Q ss_pred             CC-----CCCCCC----CCCC-----Cccc---------ceEEeeccCCccccccCCCC----------CccceEEEEec
Q 004745          147 RQ-----GSSCPP----AGSS-----HQEC---------RNILLDLRCGAKRSLADPPK----------QTLSLKSCDIS  193 (732)
Q Consensus       147 ~~-----~~~~~~----~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~----------~~~~v~~i~~~  193 (732)
                      .+     ++....    ...+     ....         ....++...+....+....-          .......+.++
T Consensus       193 ~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s  272 (368)
T 1mda_H          193 AAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL  272 (368)
T ss_dssp             CSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred             ccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence            65     221110    0000     0000         11112221111000000000          00111126799


Q ss_pred             CCCCCEEEEE-e---C-----CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCE-E
Q 004745          194 STRPHLLLVG-G---S-----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE-V  263 (732)
Q Consensus       194 ~~~~~~l~tg-~---~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~-l  263 (732)
                      |+ ++.++++ .   .     ++.+.++|+.+.+.+..+..                      +.....++|+|+|++ +
T Consensus       273 ~d-g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----------------------g~~p~gi~~s~Dg~~l~  329 (368)
T 1mda_H          273 KN-TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----------------------GHDSDAIIAAQDGASDN  329 (368)
T ss_dssp             TT-TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----------------------EEEECEEEECCSSSCEE
T ss_pred             CC-CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----------------------CCCcceEEECCCCCEEE
Confidence            99 4555544 3   2     23566999999876655421                      113778999999985 5


Q ss_pred             EEEe-cCCeEEEEECCCCCCc
Q 004745          264 LLSY-SGEHVYLMDVNHAGGR  283 (732)
Q Consensus       264 ~~~~-~dg~v~iwd~~~~~~~  283 (732)
                      ++.. .++.|.++|+.+.+..
T Consensus       330 va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          330 YANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             EEEETTTTEEEEEESSSCEEE
T ss_pred             EEccCCCCeEEEEECCCCcEE
Confidence            5555 4899999999996543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.82  E-value=1.4e-06  Score=87.00  Aligned_cols=200  Identities=7%  Similarity=-0.038  Sum_probs=133.9

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS   97 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~   97 (732)
                      +...+.++++.++|+++++...++.|..||.. ++............+.++++.++  |.++++...++.|..+|.. +.
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-g~  135 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN--GDIWFTQLNGDRIGKLTAD-GT  135 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST--TCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCC--CCEEEEccCCCeEEEECCC-CC
Confidence            34678999999999988877777899999988 65532221234467899999987  5777777668889999876 21


Q ss_pred             CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004745           98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  177 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (732)
                      ..         ...+......+.++++.+++ +++++...++.|..+|. +++..             .+.         
T Consensus       136 ~~---------~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-------------~~~---------  182 (300)
T 2qc5_A          136 IY---------EYDLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLE-------------EYP---------  182 (300)
T ss_dssp             EE---------EEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-------------EEE---------
T ss_pred             EE---------EccCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEE-------------Eee---------
Confidence            10         11122234578899999955 67766666788999987 44310             011         


Q ss_pred             cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004745          178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  257 (732)
Q Consensus       178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  257 (732)
                        .+.....+.++.++++ ++++++....+.|.+||. +++.. .+            ..      ..... .+.+++++
T Consensus       183 --~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~-~~------------~~------~~~~~-~~~~i~~d  238 (300)
T 2qc5_A          183 --LPTNAAAPVGITSGND-GALWFVEIMGNKIGRITT-TGEIS-EY------------DI------PTPNA-RPHAITAG  238 (300)
T ss_dssp             --CSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEE-EE------------EC------SSTTC-CEEEEEEC
T ss_pred             --CCCCCCCcceEEECCC-CCEEEEccCCCEEEEEcC-CCcEE-EE------------EC------CCCCC-CceEEEEC
Confidence              0112236788999998 677777666788999998 33211 11            00      01111 47899999


Q ss_pred             CCCCEEEEEecCCeEEEEECC
Q 004745          258 PNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       258 p~g~~l~~~~~dg~v~iwd~~  278 (732)
                      ++|++.++...++.|..|+..
T Consensus       239 ~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          239 KNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             STTCEEEEETTTTEEEEECTT
T ss_pred             CCCCEEEeccCCCeEEEECCC
Confidence            999866665567899999983

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.81  E-value=5.8e-08  Score=99.31  Aligned_cols=145  Identities=16%  Similarity=0.162  Sum_probs=104.4

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      .+.. |+.++|  |+++|+++ .++.|++||+.+....... ..|...|.++.+.+.   + ++++..||.|.+||+...
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~p---~-~av~~~dG~L~v~dl~~~  156 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN---T-LVILNSVNDLSALDLRTK  156 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS---E-EEEEETTSEEEEEETTTC
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcc-ceeecceeeEEecCC---C-EEEEECCCCEEEEEccCC
Confidence            4666 999999  99999999 7899999999877655555 577888998888765   3 888899999999999853


Q ss_pred             CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004745           97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  176 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (732)
                      .           ..   .+...|++++|+|.+   ++.|..||.+++|+....+..         ....+   ...  ..
T Consensus       157 ~-----------~~---~~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~---------~k~~I---~~P--p~  205 (388)
T 1xip_A          157 S-----------TK---QLAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEME---------KQFEF---SLP--SE  205 (388)
T ss_dssp             C-----------EE---EEEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEE---------EEEEE---CCC--HH
T ss_pred             c-----------cc---cccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCcccc---------cccee---cCC--cc
Confidence            2           11   255689999999955   678999999999988665410         00000   000  01


Q ss_pred             ccCCCCCccceEEEEecCCCCCEEEE
Q 004745          177 LADPPKQTLSLKSCDISSTRPHLLLV  202 (732)
Q Consensus       177 ~~~~~~~~~~v~~i~~~~~~~~~l~t  202 (732)
                      +....++...|.++.|.++ +.++++
T Consensus       206 ~~~~~~~~~~V~sI~wl~~-~~flv~  230 (388)
T 1xip_A          206 LEELPVEEYSPLSVTILSP-QDFLAV  230 (388)
T ss_dssp             HHTSCTTTSEEEEEEESSS-SEEEEE
T ss_pred             cccccCCCeeEEEEEEecC-CeEEEE
Confidence            1111235578999999997 666665

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.77  E-value=1.2e-07  Score=96.71  Aligned_cols=78  Identities=8%  Similarity=-0.060  Sum_probs=62.2

Q ss_pred             ccCCCCEEEEecC---------CCcEEEEEcCcccEEEEEecCcccEEEEeecCCCC-eEEEec-CCCcEEEEcCCCCCC
Q 004745          604 LGQRGDYIASGSD---------DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSG-IDNTIKIWTPSASVP  672 (732)
Q Consensus       604 ~s~dg~~lasgs~---------Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~-~l~S~s-~D~~i~vW~~~~~~~  672 (732)
                      ++||+++|..+..         +..+.++|+.+++.++++.... ...+++|+|||+ ++++.. .+++|.|+|+.+.+.
T Consensus       271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence            5888887765432         2356699999999999987654 689999999997 677777 599999999999999


Q ss_pred             ccccCCCCCC
Q 004745          673 SIVSGGAAGP  682 (732)
Q Consensus       673 ~~~~~gh~~~  682 (732)
                      +.+.....+|
T Consensus       350 v~~I~vg~~P  359 (368)
T 1mda_H          350 QSSVELDKGP  359 (368)
T ss_dssp             EEECCCCSCC
T ss_pred             EEEEECCCCC
Confidence            8877654444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.77  E-value=4.2e-07  Score=102.61  Aligned_cols=68  Identities=10%  Similarity=0.028  Sum_probs=48.7

Q ss_pred             ccCCCCEEEEecCCC---cEEEEEcCcccEEEEEe-cCcccEEEEeecCCCCeEEEecCC----CcEEEEcCCCCCC
Q 004745          604 LGQRGDYIASGSDDG---RWFIWEKQTGRLIKMLL-GDEAVVNCVQCHPFDCVVATSGID----NTIKIWTPSASVP  672 (732)
Q Consensus       604 ~s~dg~~lasgs~Dg---~i~iWd~~tg~~~~~l~-gH~~~V~~v~fsp~~~~l~S~s~D----~~i~vW~~~~~~~  672 (732)
                      +++++++|+....++   .|++||+..+. ...+. .+...|..+.++|++..|+-...+    ++|..||+.+++.
T Consensus       333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          333 VHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            578888887665544   78999988554 45554 456778999999998855544434    7899999987753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.77  E-value=1.7e-06  Score=87.68  Aligned_cols=198  Identities=8%  Similarity=-0.059  Sum_probs=119.1

Q ss_pred             CceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           20 GCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        20 ~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      .-..+.+|+|++ .++++...++.|.+||..+++... +  .....+.++.|+|+  |+++++. .+ .|.+||..++..
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~--~~~~~v~~i~~~~d--g~l~v~~-~~-gl~~~d~~~g~~  121 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H--ALPFMGSALAKISD--SKQLIAS-DD-GLFLRDTATGVL  121 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E--ECSSCEEEEEEEET--TEEEEEE-TT-EEEEEETTTCCE
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E--ECCCcceEEEEeCC--CeEEEEE-CC-CEEEEECCCCcE
Confidence            345678999975 466666678899999998876543 3  23467999999998  4666654 44 499999875431


Q ss_pred             CCCCCCCCCCceeec-c-ccCceeEEEEecCCCcEEEEEeC------CCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004745           99 RGLDDNAITPSALYQ-C-HTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  170 (732)
Q Consensus        99 ~~~~~~~~~~~~~~~-~-h~~~v~~l~~~p~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  170 (732)
                      ..        +.... . ....+++++++|++ +++++...      .+.|..++  +++.            ..+.   
T Consensus       122 ~~--------~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~------------~~~~---  175 (326)
T 2ghs_A          122 TL--------HAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKV------------TKLF---  175 (326)
T ss_dssp             EE--------EECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEE------------EEEE---
T ss_pred             EE--------EeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcE------------EEee---
Confidence            10        11111 1 12468899999965 66554432      13444444  3220            0000   


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEE-EEEeCCCeEEEEECC--CC-CCCcccccCCCCCCccccccccccccCCC
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRR--ML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~tg~~dg~v~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                                 ........++|+|+ ++.| ++.+.++.|.+||+.  ++ .....        ..+..+       ...
T Consensus       176 -----------~~~~~~~~i~~s~d-g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~--------~~~~~~-------~~~  228 (326)
T 2ghs_A          176 -----------ADISIPNSICFSPD-GTTGYFVDTKVNRLMRVPLDARTGLPTGKA--------EVFIDS-------TGI  228 (326)
T ss_dssp             -----------EEESSEEEEEECTT-SCEEEEEETTTCEEEEEEBCTTTCCBSSCC--------EEEEEC-------TTS
T ss_pred             -----------CCCcccCCeEEcCC-CCEEEEEECCCCEEEEEEcccccCCcccCc--------eEEEEC-------CCC
Confidence                       01114568999999 5555 555567899999986  33 21100        000000       011


Q ss_pred             ccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                      .. .+..++++++|.+.++...++.|.+||..
T Consensus       229 ~~-~p~gi~~d~~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          229 KG-GMDGSVCDAEGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             SS-EEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             CC-CCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence            11 36789999999877766667899999983

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.76  E-value=1.2e-06  Score=88.75  Aligned_cols=193  Identities=11%  Similarity=0.122  Sum_probs=118.8

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccC---CCcCeEEEEEecCCCCCEEEEEECC----CcEEEE
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG---HSANVFCTKFVPETSDELVVSGAGD----AEVRLF   91 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~---h~~~V~~~~~s~~~~g~~l~s~~~d----g~i~vw   91 (732)
                      ...+.+++|+++|+++++. .+ .|.+||..+++........   ....+.++.++|+  |+++++...+    +...||
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~v~~~~~~~~~~~~~l~  164 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIY  164 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC--CCEEEEeCCCcCCCCceEEE
Confidence            4679999999999877765 44 4999999888754332111   1246899999998  4766655422    233444


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC--CC-CCCCCCCCCCcccceEEee
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QG-SSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~  168 (732)
                      .+..  +.         +..+..+....+.++|+|++..++++.+.++.|.+||+.  ++ ...         ....+..
T Consensus       165 ~~~~--g~---------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------~~~~~~~  224 (326)
T 2ghs_A          165 HVAK--GK---------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---------KAEVFID  224 (326)
T ss_dssp             EEET--TE---------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---------CCEEEEE
T ss_pred             EEeC--Cc---------EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---------CceEEEE
Confidence            4432  21         222323344578999999764455555667899999986  33 210         0011111


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                      +           .........+.++++ ++++++...++.|.+||. +++.+..+.                    .+..
T Consensus       225 ~-----------~~~~~~p~gi~~d~~-G~lwva~~~~~~v~~~d~-~g~~~~~i~--------------------~~~~  271 (326)
T 2ghs_A          225 S-----------TGIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDT-DGNHIARYE--------------------VPGK  271 (326)
T ss_dssp             C-----------TTSSSEEEEEEECTT-SCEEEEEETTTEEEEECT-TCCEEEEEE--------------------CSCS
T ss_pred             C-----------CCCCCCCCeeEECCC-CCEEEEEeCCCEEEEECC-CCCEEEEEE--------------------CCCC
Confidence            1           111224578899998 677777767789999998 343332221                    1111


Q ss_pred             ccEEEEEEc-CCCCEEEEEecC
Q 004745          249 LHLTHVTFS-PNGEEVLLSYSG  269 (732)
Q Consensus       249 ~~i~~l~~s-p~g~~l~~~~~d  269 (732)
                       .+++++|+ |+++.|++++..
T Consensus       272 -~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          272 -QTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             -BEEEEEEESTTSCEEEEEEBC
T ss_pred             -CcEEEEEecCCCCEEEEEecC
Confidence             48999998 898888766654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.75  E-value=2.6e-09  Score=110.54  Aligned_cols=183  Identities=11%  Similarity=0.095  Sum_probs=102.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004745           30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  109 (732)
Q Consensus        30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  109 (732)
                      ++..|++++.|+.|+.||..+|+.+.++ ..  +.+.+..+..+  +..+++++.|+.|+.||..+++.          +
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~-~~--~~~~s~p~~~~--g~~~v~~s~dg~l~a~d~~tG~~----------~   72 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTL-KE--DPVLQVPTHVE--EPAFLPDPNDGSLYTLGSKNNEG----------L   72 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEE-EC--CCSCCCC-------CCEEECTTTCCEEEC-----CC----------S
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEe-cC--CCceecceEcC--CCEEEEeCCCCEEEEEECCCCce----------e
Confidence            5778999999999999999999999888 33  45555555665  46778778999999999986543          2


Q ss_pred             eeeccccC-cee-EEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccce
Q 004745          110 ALYQCHTR-RVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL  187 (732)
Q Consensus       110 ~~~~~h~~-~v~-~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  187 (732)
                      ..+..+.. .+. +..+. .+ ..+++++.|+.|+.||..+++..              |.....           .   
T Consensus        73 w~~~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~--------------w~~~~~-----------~---  122 (369)
T 2hz6_A           73 TKLPFTIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQ--------------QTLSSA-----------F---  122 (369)
T ss_dssp             EECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------------------
T ss_pred             eeeeccCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEE--------------EEecCC-----------C---
Confidence            22222111 110 00111 23 46777888999999999988742              111110           0   


Q ss_pred             EEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC---CEEE
Q 004745          188 KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG---EEVL  264 (732)
Q Consensus       188 ~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g---~~l~  264 (732)
                       ...++|+ +..+++++.|+.|+.||.++++.+-.+...                       .....++.++.   ..++
T Consensus       123 -~~~~~p~-~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-----------------------~~~~~~~~~~~~~~~~v~  177 (369)
T 2hz6_A          123 -ADSLSPS-TSLLYLGRTEYTITMYDTKTRELRWNATYF-----------------------DYAASLPEDDVDYKMSHF  177 (369)
T ss_dssp             ------------EEEEEEEEEEECCCSSSSSCCCEEEEE-----------------------EECCBCCCCCTTCCCCEE
T ss_pred             -ccccccc-CCEEEEEecCCEEEEEECCCCCEEEeEecc-----------------------cccCccccCCccccceEE
Confidence             1234455 668888999999999999988754332100                       01112233322   4577


Q ss_pred             EEecCCeEEEEECCCCCC
Q 004745          265 LSYSGEHVYLMDVNHAGG  282 (732)
Q Consensus       265 ~~~~dg~v~iwd~~~~~~  282 (732)
                      +++.+|.|+.||..+++.
T Consensus       178 ~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          178 VSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             EEETSCEEEEECTTTCCE
T ss_pred             EECCCCEEEEEECCCCcE
Confidence            888999999999998753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.72  E-value=3e-07  Score=92.41  Aligned_cols=208  Identities=11%  Similarity=0.051  Sum_probs=126.9

Q ss_pred             cccEeeeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745           10 SQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      ..+..+..+........|+|+|+ +++++..++.|..|+. +++ ...+ ..+...+.+++++++  |+++++...++.|
T Consensus        35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~-~~~~~~~~gl~~d~d--G~l~v~~~~~~~v  109 (305)
T 3dr2_A           35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVL-LDATAFTNGNAVDAQ--QRLVHCEHGRRAI  109 (305)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEE-EESCSCEEEEEECTT--SCEEEEETTTTEE
T ss_pred             CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEE-eCCCCccceeeECCC--CCEEEEECCCCEE
Confidence            34555666677788999999998 6677778899999998 454 3334 345667899999998  4766655556789


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccc-cCceeEEEEecCCCcEEEE----EeC-------------CCcEEEEECCCCC
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWS----ASE-------------DGTLRQHDFRQGS  150 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s----~s~-------------dg~i~vwd~~~~~  150 (732)
                      .+|+.. +....       ......+. ...++.+++.|++ +++++    |..             .+.|..+|..+++
T Consensus       110 ~~~~~~-g~~~~-------~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~  180 (305)
T 3dr2_A          110 TRSDAD-GQAHL-------LVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP  180 (305)
T ss_dssp             EEECTT-SCEEE-------EECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC
T ss_pred             EEECCC-CCEEE-------EEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc
Confidence            999875 21100       00111111 2346789999955 67765    321             2456666665544


Q ss_pred             CCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC------CeEEEEECCCCCCCcccc
Q 004745          151 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFARLYDRRMLPPLTSCQ  224 (732)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d------g~v~iwd~~~~~~~~~~~  224 (732)
                      ..                       .+.    .......++|+|+ ++.|+.+...      +.|++||+.... +... 
T Consensus       181 ~~-----------------------~~~----~~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~-  230 (305)
T 3dr2_A          181 LQ-----------------------RMA----DLDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR-  230 (305)
T ss_dssp             CE-----------------------EEE----EESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTE-EEEE-
T ss_pred             EE-----------------------EEe----cCCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC-
Confidence            11                       010    1124578999999 6767666554      789999987542 1110 


Q ss_pred             cCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          225 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                               ..+...      ... ....++++++|+ |.+++.+ .|.+|+...
T Consensus       231 ---------~~~~~~------~~~-~pdgi~~d~~G~-lwv~~~~-gv~~~~~~g  267 (305)
T 3dr2_A          231 ---------RHFASV------PDG-LPDGFCVDRGGW-LWSSSGT-GVCVFDSDG  267 (305)
T ss_dssp             ---------EEEECC------SSS-CCCSEEECTTSC-EEECCSS-EEEEECTTS
T ss_pred             ---------eEEEEC------CCC-CCCeEEECCCCC-EEEecCC-cEEEECCCC
Confidence                     000000      011 245688999999 5555544 599998743

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.69  E-value=1.7e-06  Score=97.00  Aligned_cols=53  Identities=21%  Similarity=0.199  Sum_probs=42.1

Q ss_pred             cCCCCEEEEecCCCcEEEEEcCcccEEEEEecCccc-EEEEeecCCCC-eEEEec
Q 004745          605 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV-VNCVQCHPFDC-VVATSG  657 (732)
Q Consensus       605 s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~-V~~v~fsp~~~-~l~S~s  657 (732)
                      +..+.+|+.|+.||.++.||.+||+++.+++.+.+. .+-+.|..+|+ |++..+
T Consensus       483 ~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          483 STAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             eECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence            557889999999999999999999999999865433 35577788997 555443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.64  E-value=3.6e-06  Score=80.95  Aligned_cols=225  Identities=8%  Similarity=-0.028  Sum_probs=135.8

Q ss_pred             hccccEeeeccCCc--eeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745            8 RLSQERELEGHQGC--VNAISWNSKGSLLISGSD--DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus         8 ~~~~~~~l~~h~~~--V~~l~~s~dg~~lasg~~--dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      +.+.++++. |...  ...++|++|+.++++.+.  ++.|++.|+.+++.+..+..+.......+.+..+   .+.++.-
T Consensus         8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~---~lyv~t~   83 (266)
T 2iwa_A            8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNE---KLYQVVW   83 (266)
T ss_dssp             EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETT---EEEEEET
T ss_pred             CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCC---EEEEEEe
Confidence            455667773 5533  579999999866666553  5799999999999998873222222345556532   5555555


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      .++.+.++|..+.+          .+..+..-..  ....+++++..++++ ..++.|.++|..+.+...          
T Consensus        84 ~~~~v~viD~~t~~----------v~~~i~~g~~--~g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~----------  140 (266)
T 2iwa_A           84 LKNIGFIYDRRTLS----------NIKNFTHQMK--DGWGLATDGKILYGS-DGTSILYEIDPHTFKLIK----------  140 (266)
T ss_dssp             TCSEEEEEETTTTE----------EEEEEECCSS--SCCEEEECSSSEEEE-CSSSEEEEECTTTCCEEE----------
T ss_pred             cCCEEEEEECCCCc----------EEEEEECCCC--CeEEEEECCCEEEEE-CCCCeEEEEECCCCcEEE----------
Confidence            68999999998642          2344431101  123455666566655 467899999998866220          


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                      .+...          ........++.+.|. + +..++....++.|.+.|+.+++.+..+....        ..+.....
T Consensus       141 ~I~Vg----------~~~~p~~~~nele~~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g--------~~~~~~~~  200 (266)
T 2iwa_A          141 KHNVK----------YNGHRVIRLNELEYI-N-GEVWANIWQTDCIARISAKDGTLLGWILLPN--------LRKKLIDE  200 (266)
T ss_dssp             EEECE----------ETTEECCCEEEEEEE-T-TEEEEEETTSSEEEEEETTTCCEEEEEECHH--------HHHHHHHT
T ss_pred             EEEEC----------CCCcccccceeEEEE-C-CEEEEecCCCCeEEEEECCCCcEEEEEECCC--------cccccccc
Confidence            00000          000001135677777 4 6556665568899999999988766553210        00000000


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEe-cCCeEEEEECCC
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH  279 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~-~dg~v~iwd~~~  279 (732)
                      ........+.++|+|+++.|++++ ..+.|++.++..
T Consensus       201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            001112478999999987666665 478999998876

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.62  E-value=3.5e-06  Score=94.42  Aligned_cols=62  Identities=10%  Similarity=0.054  Sum_probs=51.8

Q ss_pred             CCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCC
Q 004745          617 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGA  679 (732)
Q Consensus       617 Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh  679 (732)
                      +|+|+.||+.||+.+.++..|.. +..-.++..+.+++.++.|+.|++||.++++++..+...
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence            68999999999999999887643 344466777889999999999999999999999766543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.57  E-value=4.3e-06  Score=93.45  Aligned_cols=60  Identities=12%  Similarity=0.049  Sum_probs=51.2

Q ss_pred             CCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccC
Q 004745          617 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG  677 (732)
Q Consensus       617 Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~  677 (732)
                      .|.|..||+.||+.+.++.. ...+.+..++.++.+++.++.|+.+++||.++++.+..+.
T Consensus       456 ~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence            48899999999999988873 4456666778888888889999999999999999988765

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.53  E-value=2.6e-05  Score=87.21  Aligned_cols=226  Identities=13%  Similarity=0.067  Sum_probs=117.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC----cCeEEEEEecCCCCCEEEEEEC------CCcEEEEEcCCCCCC
Q 004745           30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHS----ANVFCTKFVPETSDELVVSGAG------DAEVRLFNLSRFSGR   99 (732)
Q Consensus        30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~----~~V~~~~~s~~~~g~~l~s~~~------dg~i~vwd~~~~~~~   99 (732)
                      ++..|+.++.|+.|..+|..+|+.+.++.....    ..+.+--...+   ..++.++.      ++.|+.+|..+++..
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~---~~v~v~~~~~~~~~~g~v~a~D~~tG~~~  203 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFK---GKVIIGNGGAEYGVRGYITAYDAETGERK  203 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEET---TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEEC---CEEEEEecccccCCCCEEEEEECCCCcEE
Confidence            356788888999999999999999988832201    12221111112   45555543      689999999875421


Q ss_pred             CCC---CCC-CCCc---------eeec---------cccCceeEEEEecCCCcEEEEEeCCC------------------
Q 004745          100 GLD---DNA-ITPS---------ALYQ---------CHTRRVKKLAVEVGNPHVVWSASEDG------------------  139 (732)
Q Consensus       100 ~~~---~~~-~~~~---------~~~~---------~h~~~v~~l~~~p~~~~~l~s~s~dg------------------  139 (732)
                      -..   ... ..+.         ..+.         +.......+++.|++ .+++.+..++                  
T Consensus       204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~  282 (677)
T 1kb0_A          204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYL  282 (677)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred             EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeee
Confidence            100   000 0000         0000         111222457888855 6666666554                  


Q ss_pred             -cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCC---CEEEEEeCCCeEEEEECC
Q 004745          140 -TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGSDAFARLYDRR  215 (732)
Q Consensus       140 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~---~~l~tg~~dg~v~iwd~~  215 (732)
                       .|..+|..+++              .+|..+...... ..... .....-+....+ |   ..++.++.+|.|+++|.+
T Consensus       283 ~sv~AlD~~TG~--------------~~W~~~~~~~d~-wd~~~-~~~p~l~~~~~d-G~~~~~l~~~~~~G~l~~lD~~  345 (677)
T 1kb0_A          283 ASIVALDPDTGK--------------YKWHYQETPGDN-WDYTS-TQPMILADIKIA-GKPRKVILHAPKNGFFFVLDRT  345 (677)
T ss_dssp             TEEEEECTTTCC--------------EEEEEESSTTCC-SCCCC-CSCCEEEEEEET-TEEEEEEEECCTTSEEEEEETT
T ss_pred             EEEEEEECCCCC--------------EEEEEecCCCcc-ccccc-CCCcEEEecccC-CcEeeEEEEECCCCEEEEEECC
Confidence             48888888776              233322211000 00000 011122223234 4   678999999999999999


Q ss_pred             CCCCCcccccCCCC------CCcccccccc--------cc--ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          216 MLPPLTSCQKRMSP------PPCVNYFCPM--------HL--SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       216 ~~~~~~~~~~~~~~------~~~~~~~~~~--------~~--~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                      +++.+.........      ..|...+.+.        ..  ...|...  -..++|+|++.++++...+-...++...
T Consensus       346 tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~--w~~~a~dp~~~~~yv~~~~~~~~~~~~~  422 (677)
T 1kb0_A          346 NGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN--WHPMSFNPQTGLVYLPAQNVPVNLMDDK  422 (677)
T ss_dssp             TCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC--SSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred             CCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC--CCCceEcCCCCEEEEeChhcceeeeccc
Confidence            99876554322100      0000000000        00  0011111  2357899999999988877665555443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.52  E-value=1.1e-06  Score=89.94  Aligned_cols=221  Identities=9%  Similarity=0.011  Sum_probs=126.8

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCeeEEEEccC-----CCcCeEEEEEecCCCCCEEEEEE---
Q 004745           17 GHQGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETG-----HSANVFCTKFVPETSDELVVSGA---   83 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~-----dg~i~vWd~~~~~~~~~~~~~-----h~~~V~~~~~s~~~~g~~l~s~~---   83 (732)
                      +|-..+..++++++|+++++-..     ++.|.+||+.+++.+..+...     +...+..++++|+. +..+++-.   
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~-g~~yvtd~~~~  142 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH-NFVYISDPAPD  142 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT-TEEEEEECCSG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC-CEEEEEcCccC
Confidence            45678999999999987776543     578999999999877666221     22456899999863 35556655   


Q ss_pred             CCCcEEEEEcCCCCCCCCCCC--CCCC---ceeecc--------------ccCceeEEEEecCCCcEEEEEeCCC-cEEE
Q 004745           84 GDAEVRLFNLSRFSGRGLDDN--AITP---SALYQC--------------HTRRVKKLAVEVGNPHVVWSASEDG-TLRQ  143 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~--~~~~---~~~~~~--------------h~~~v~~l~~~p~~~~~l~s~s~dg-~i~v  143 (732)
                      .++.|.+||+.++........  ...+   .....+              ....++.|+|+|++ +.|+.+..++ .|..
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~  221 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYR  221 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEE
T ss_pred             CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEE
Confidence            678999999975432110000  0000   000011              11346889999965 6666666555 4444


Q ss_pred             EECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccc
Q 004745          144 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  223 (732)
Q Consensus       144 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~  223 (732)
                      ++.......  .. ......           ..+. ..++......++++++ ++++++...++.|.+||..+++. ..+
T Consensus       222 ~~~~~~~~~--~~-~~~~~~-----------~~~~-~~g~~g~pdgia~d~~-G~l~va~~~~~~V~~~d~~~G~~-~~~  284 (343)
T 2qe8_A          222 IKSADLSNL--QL-TDAELG-----------SKIE-RYSEKPICDGISIDKD-HNIYVGDLAHSAIGVITSADRAY-KLL  284 (343)
T ss_dssp             EEHHHHTCT--TC-CHHHHH-----------TTCE-EEEECCSCSCEEECTT-CCEEEEEGGGTEEEEEETTTTEE-EEE
T ss_pred             EEHHHhcCC--CC-Chhhhh-----------cceE-ecccCCCCceEEECCC-CCEEEEccCCCeEEEEECCCCCE-EEE
Confidence            443211100  00 000000           0000 0011113456899998 78888888899999999844421 111


Q ss_pred             ccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEE
Q 004745          224 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM  275 (732)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iw  275 (732)
                      .                   ........++++|.++++++++.+..+.+.+|
T Consensus       285 ~-------------------~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          285 V-------------------TDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             E-------------------ECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             E-------------------ECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence            0                   00111248899999999877777655544444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.50  E-value=3e-06  Score=85.02  Aligned_cols=198  Identities=9%  Similarity=0.020  Sum_probs=119.7

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc--cC-CCcCeEEEEEecCCCCCEEEE----EEC
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE--TG-HSANVFCTKFVPETSDELVVS----GAG   84 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~--~~-h~~~V~~~~~s~~~~g~~l~s----~~~   84 (732)
                      ...+..+...+..++++++|+++++...++.|.+|+.. ++......  .+ ....+.++.++|+  |.++++    |..
T Consensus        78 ~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~  154 (305)
T 3dr2_A           78 VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLR  154 (305)
T ss_dssp             EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTT--SCEEEECCSGGGS
T ss_pred             EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCC--CCEEEeCcCCCcc
Confidence            34555567788999999999977766666889999976 55332220  11 1234678999998  577776    321


Q ss_pred             -------------CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC------CcEEEEE
Q 004745           85 -------------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHD  145 (732)
Q Consensus        85 -------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd  145 (732)
                                   .+.|..+|..++.           +..+. .....+.++|+|++ +.|+.+...      +.|.+|+
T Consensus       155 ~~~~~~~~~~~~~~~~v~~~d~~~g~-----------~~~~~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~  221 (305)
T 3dr2_A          155 KPSQGCPADPELAHHSVYRLPPDGSP-----------LQRMA-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFA  221 (305)
T ss_dssp             CGGGSCCCCCSSSCEEEEEECSSSCC-----------CEEEE-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEE
T ss_pred             ccccccccccccCCCeEEEEcCCCCc-----------EEEEe-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEE
Confidence                         2456666665422           12222 34567889999966 555555443      6899999


Q ss_pred             CCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccccc
Q 004745          146 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  225 (732)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~  225 (732)
                      +.... .        .....+...             .......+.++++ +++. +++.+ .|.+||.. ++.+..+. 
T Consensus       222 ~~~~~-l--------~~~~~~~~~-------------~~~~pdgi~~d~~-G~lw-v~~~~-gv~~~~~~-g~~~~~~~-  274 (305)
T 3dr2_A          222 WRDGA-L--------HDRRHFASV-------------PDGLPDGFCVDRG-GWLW-SSSGT-GVCVFDSD-GQLLGHIP-  274 (305)
T ss_dssp             EETTE-E--------EEEEEEECC-------------SSSCCCSEEECTT-SCEE-ECCSS-EEEEECTT-SCEEEEEE-
T ss_pred             ecCCC-c--------cCCeEEEEC-------------CCCCCCeEEECCC-CCEE-EecCC-cEEEECCC-CCEEEEEE-
Confidence            86532 0        000111111             0113456788988 6644 44444 59999984 43332221 


Q ss_pred             CCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEE
Q 004745          226 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY  273 (732)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~  273 (732)
                                         .+.  .+.+++|.|+++.|++++.++..+
T Consensus       275 -------------------~~~--~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          275 -------------------TPG--TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             -------------------CSS--CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             -------------------CCC--ceeEEEEeCCCCEEEEEcCCeEEE
Confidence                               111  277899999999999888764433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.48  E-value=8.3e-06  Score=83.52  Aligned_cols=256  Identities=14%  Similarity=0.100  Sum_probs=138.2

Q ss_pred             Ec--CCCCEEEEE-eCCCcEEEEeCCCC----eeEEEEc----c-C-CCcCeEEEEEecCCCCCEEEEEECC------Cc
Q 004745           27 WN--SKGSLLISG-SDDTHINVWSYSSR----KLLHSIE----T-G-HSANVFCTKFVPETSDELVVSGAGD------AE   87 (732)
Q Consensus        27 ~s--~dg~~lasg-~~dg~i~vWd~~~~----~~~~~~~----~-~-h~~~V~~~~~s~~~~g~~l~s~~~d------g~   87 (732)
                      ++  +++++|+.. ..+++|.|+|+.+.    +..+.+.    . . -...-..+..+|+  | +++++..+      +.
T Consensus        89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd--G-i~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           89 GKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD--A-IYISALGNEEGEGPGG  165 (462)
T ss_dssp             CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS--C-EEEEEEEETTSCSCCE
T ss_pred             cCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC--e-EEEEcCCCcCCCCCCe
Confidence            36  788877664 56789999998755    5666551    0 1 1113456777888  5 77777666      78


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeecc--cc-CceeEEEEecCCCcEEEEEe-------------------CCCcEEEEE
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQC--HT-RRVKKLAVEVGNPHVVWSAS-------------------EDGTLRQHD  145 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~--h~-~~v~~l~~~p~~~~~l~s~s-------------------~dg~i~vwd  145 (732)
                      |.+.|..+.+          .+..+..  .. .--..+.|+|++ +.+++..                   .+.+|.+||
T Consensus       166 v~vlD~~T~~----------v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D  234 (462)
T 2ece_A          166 ILMLDHYSFE----------PLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD  234 (462)
T ss_dssp             EEEECTTTCC----------EEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred             EEEEECCCCe----------EEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence            9999998743          2333331  11 123457889965 6777764                   367899999


Q ss_pred             CCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEE--ecCCCCCEEEEEe------CCCeEEEEECCCC
Q 004745          146 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD--ISSTRPHLLLVGG------SDAFARLYDRRML  217 (732)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~~~~~~~~l~tg~------~dg~v~iwd~~~~  217 (732)
                      +.+++..            ..+.+.          . .......+.  |+|+ ++++.+++      .+++|.+|....+
T Consensus       235 ~~~~k~~------------~tI~vg----------~-~g~~P~~i~f~~~Pd-g~~aYV~~e~~~~~Lss~V~v~~~d~g  290 (462)
T 2ece_A          235 LRKRKRI------------HSLTLG----------E-ENRMALELRPLHDPT-KLMGFINMVVSLKDLSSSIWLWFYEDG  290 (462)
T ss_dssp             TTTTEEE------------EEEESC----------T-TEEEEEEEEECSSTT-CCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred             CCCCcEe------------eEEecC----------C-CCCccceeEeeECCC-CCEEEEEEeeeccCCCceEEEEEecCC
Confidence            9876421            001110          0 111223444  4998 55655554      6678887766532


Q ss_pred             CCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCccee--eecCCCCc
Q 004745          218 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMR--YTVGDASK  294 (732)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~--~~~~~~~~  294 (732)
                      + .........+...+....+......+........+.++|||++|+++.. .+.|.+||+.........  ...+....
T Consensus       291 ~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~  369 (462)
T 2ece_A          291 K-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFH  369 (462)
T ss_dssp             E-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTT
T ss_pred             c-eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeec
Confidence            1 1110000000000000000000000000113677999999999999877 789999999754322211  11111111


Q ss_pred             eeeeccCCCCccCCCCCCccCCCccccc
Q 004745          295 IMSFTPTLNGLELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (732)
                      ... .|...........++++|||+.+.
T Consensus       370 ~~~-~~~G~~~~ggPr~~~lSpDGk~Ly  396 (462)
T 2ece_A          370 RAD-HPAGHKLTGAPQMLEISRDGRRVY  396 (462)
T ss_dssp             CBC-CTTSCCCCSCCCCEEECTTSSEEE
T ss_pred             ccc-ccccccCCCCCCEEEEcCCCCEEE
Confidence            111 111122334578899999999876

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.48  E-value=6e-06  Score=78.29  Aligned_cols=209  Identities=9%  Similarity=-0.008  Sum_probs=125.2

Q ss_pred             ccccEeeeccCCc--eeEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeeEEEEccCCCcCeEE--EEEecCCCCCEEEEE
Q 004745            9 LSQERELEGHQGC--VNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFC--TKFVPETSDELVVSG   82 (732)
Q Consensus         9 ~~~~~~l~~h~~~--V~~l~~s~dg~~lasg~~dg--~i~vWd~~~~~~~~~~~~~h~~~V~~--~~~s~~~~g~~l~s~   82 (732)
                      .+.++++ .|...  ...+.|+ ++.++.+++.+|  .|+++|+.+++.+.++..  ......  +.+..+   .+.+..
T Consensus        31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~~g~---~ly~lt  103 (262)
T 3nol_A           31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISDWKD---KIVGLT  103 (262)
T ss_dssp             EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEEETT---EEEEEE
T ss_pred             eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEEeCC---EEEEEE
Confidence            4556666 45443  3678998 777777777766  899999999999988832  233433  444432   455555


Q ss_pred             ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004745           83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  162 (732)
Q Consensus        83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  162 (732)
                      -.++.+.++|..+.+          .+.++.-- .  ....+++++..++++- .++.|.++|..+.+...         
T Consensus       104 w~~~~v~v~D~~t~~----------~~~ti~~~-~--eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~---------  160 (262)
T 3nol_A          104 WKNGLGFVWNIRNLR----------QVRSFNYD-G--EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVR---------  160 (262)
T ss_dssp             SSSSEEEEEETTTCC----------EEEEEECS-S--CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEE---------
T ss_pred             eeCCEEEEEECccCc----------EEEEEECC-C--CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEE---------
Confidence            568999999998743          24444421 1  2233345564555554 46789999998876320         


Q ss_pred             ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004745          163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  242 (732)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (732)
                        .+ .        +.........++.+.|. + +.+++..-.++.|.+.|.++++.+..+......+.+.       . 
T Consensus       161 --~I-~--------V~~~g~~~~~lNELe~~-~-G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~-------~-  219 (262)
T 3nol_A          161 --TI-T--------VTAHGEELPELNELEWV-D-GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG-------P-  219 (262)
T ss_dssp             --EE-E--------CEETTEECCCEEEEEEE-T-TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC-------S-
T ss_pred             --EE-E--------eccCCccccccceeEEE-C-CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc-------c-
Confidence              00 0        00000000134456665 4 6666665578899999999998766654321110000       0 


Q ss_pred             cCCCccccEEEEEEcCCCCEEEEEecC
Q 004745          243 EHGRSSLHLTHVTFSPNGEEVLLSYSG  269 (732)
Q Consensus       243 ~~~~~~~~i~~l~~sp~g~~l~~~~~d  269 (732)
                       ........+.|+|+|+++.|++.+..
T Consensus       220 -~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          220 -LPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             -CCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             -ccCcCCceEEEEEcCCCCEEEEECCC
Confidence             00112247899999999888887764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.44  E-value=6.1e-05  Score=73.67  Aligned_cols=202  Identities=7%  Similarity=0.025  Sum_probs=123.2

Q ss_pred             CceeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           20 GCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        20 ~~V~~l~~s~dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      ..+..++|++++..|. +-..++.|.++++........+ ........+++++|++ +.++++-...+.|.++++.... 
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~-  112 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQ-  112 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-ECCCCCccEEEEEecC-CeEEEEECCCCEEEEEEcCCCC-
Confidence            4567899999765555 4456789999998766543333 2333567899999974 3555555567889999987421 


Q ss_pred             CCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004745           99 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  175 (732)
Q Consensus        99 ~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (732)
                                ...+ .........++++|+++.++++...  .+.|..+++.....            ..+..       
T Consensus       113 ----------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~------------~~~~~-------  163 (267)
T 1npe_A          113 ----------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------------RILAQ-------  163 (267)
T ss_dssp             ----------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC------------EEEEC-------
T ss_pred             ----------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc------------EEEEE-------
Confidence                      1111 1122457899999966566655543  46788888753221            01110       


Q ss_pred             cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEE
Q 004745          176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  255 (732)
Q Consensus       176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  255 (732)
                            ........++++++++.++++-...+.|.++|+.......              +..     ..  . ....++
T Consensus       164 ------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~--------------~~~-----~~--~-~P~gi~  215 (267)
T 1npe_A          164 ------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK--------------VLE-----GL--Q-YPFAVT  215 (267)
T ss_dssp             ------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE--------------EEE-----CC--C-SEEEEE
T ss_pred             ------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE--------------Eec-----CC--C-CceEEE
Confidence                  0112467899999855555666667899999987532110              000     00  1 234566


Q ss_pred             EcCCCCEEEEEe-cCCeEEEEECCCCCCc
Q 004745          256 FSPNGEEVLLSY-SGEHVYLMDVNHAGGR  283 (732)
Q Consensus       256 ~sp~g~~l~~~~-~dg~v~iwd~~~~~~~  283 (732)
                      +.  +..|+.+. ..+.|.++|..+++..
T Consensus       216 ~d--~~~lyva~~~~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          216 SY--GKNLYYTDWKTNSVIAMDLAISKEM  242 (267)
T ss_dssp             EE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             Ee--CCEEEEEECCCCeEEEEeCCCCCce
Confidence            54  45565555 4689999999886543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.42  E-value=0.0001  Score=76.17  Aligned_cols=201  Identities=11%  Similarity=0.040  Sum_probs=111.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCC--------CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCC
Q 004745           30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGH--------SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  101 (732)
Q Consensus        30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h--------~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~  101 (732)
                      ++..|++++.++.|..+|..+++.+..+....        ...+.+.-...+   ..++.++.++.|..+|..+++.   
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~v~~~~g~l~a~d~~tG~~---  125 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG---GHVYIGSEKAQVYALNTSDGTV---  125 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET---TEEEEEETTSEEEEEETTTCCE---
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC---CEEEEEcCCCEEEEEECCCCCE---
Confidence            35678888888999999999999887763221        222322222222   5788888999999999987532   


Q ss_pred             CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004745          102 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  181 (732)
Q Consensus       102 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (732)
                             +................  + ..++.++.++.|..+|..+++.              +|.......  .....
T Consensus       126 -------~W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~--------------~W~~~~~~~--~~~~~  179 (376)
T 3q7m_A          126 -------AWQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAV--------------KWTVNLDMP--SLSLR  179 (376)
T ss_dssp             -------EEEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCE--------------EEEEECCC-------C
T ss_pred             -------EEEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcE--------------EEEEeCCCC--ceeec
Confidence                   22222221111112222  3 4677788899999999988862              232221110  00000


Q ss_pred             CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC
Q 004745          182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  261 (732)
Q Consensus       182 ~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~  261 (732)
                      ....+    ...   +..+++++.++.|..+|..+++.+-...........  ..  ..+.  .....++    +  .+.
T Consensus       180 ~~~~~----~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~--~~--~~~~--~~~~~p~----~--~~~  240 (376)
T 3q7m_A          180 GESAP----TTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGST--EI--DRLS--DVDTTPV----V--VNG  240 (376)
T ss_dssp             CCCCC----EEE---TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------------CCCCCCE----E--ETT
T ss_pred             CCCCc----EEE---CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCc--cc--cccc--ccCCCcE----E--ECC
Confidence            00111    111   236788888999999999988754333211000000  00  0000  0000011    1  245


Q ss_pred             EEEEEecCCeEEEEECCCCC
Q 004745          262 EVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       262 ~l~~~~~dg~v~iwd~~~~~  281 (732)
                      .+++++.++.|..+|..+++
T Consensus       241 ~v~~~~~~g~l~~~d~~tG~  260 (376)
T 3q7m_A          241 VVFALAYNGNLTALDLRSGQ  260 (376)
T ss_dssp             EEEEECTTSCEEEEETTTCC
T ss_pred             EEEEEecCcEEEEEECCCCc
Confidence            68888889999999998864

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.39  E-value=2.2e-06  Score=86.97  Aligned_cols=181  Identities=11%  Similarity=0.167  Sum_probs=102.0

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCC
Q 004745           23 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  102 (732)
Q Consensus        23 ~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~  102 (732)
                      .+..+..++. |..++.++.|..|| .+++.+..+ ......+.++...++   ..|..++.+  |..+|..   +..  
T Consensus        23 ~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~-~~~~~~~~~~~~~~~---g~l~v~t~~--l~~~d~~---g~~--   89 (330)
T 3hxj_A           23 SSPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF-KSGEIIECRPSIGKD---GTIYFGSDK--VYAINPD---GTE--   89 (330)
T ss_dssp             CCCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS-CGGGEEEECCEETTT---TEECCSSCE--EEEECCC---GGG--
T ss_pred             cCceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE-ecCCCcccceEEecC---CcEEEecCc--EEEECCC---CcE--
Confidence            3445555665 55667788999999 888877665 334445566666665   345555544  8888753   211  


Q ss_pred             CCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCC
Q 004745          103 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  182 (732)
Q Consensus       103 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (732)
                            +..+...........+.  + ..++.++.++.|..+|.. ++.              .+.....          
T Consensus        90 ------~~~~~~~~~~~~~~~~~--~-~~l~v~t~~~~l~~~d~~-g~~--------------~~~~~~~----------  135 (330)
T 3hxj_A           90 ------KWRFDTKKAIVSDFTIF--E-DILYVTSMDGHLYAINTD-GTE--------------KWRFKTK----------  135 (330)
T ss_dssp             ------GGGSCC-----CCEEEE--T-TEEEEECTTSEEEEECTT-SCE--------------EEEEECS----------
T ss_pred             ------EEEEECCCCcccCceEE--C-CEEEEEecCCEEEEEcCC-CCE--------------EEEEcCC----------
Confidence                  12222122222223333  3 456678888999999987 541              1211110          


Q ss_pred             CccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCE
Q 004745          183 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE  262 (732)
Q Consensus       183 ~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~  262 (732)
                       ...+.++...++ + .+..++.++.|..+|.. ++.+.....                    ... .+.++.+.+++. 
T Consensus       136 -~~~~~~~~~~~~-g-~l~vgt~~~~l~~~d~~-g~~~~~~~~--------------------~~~-~~~~~~~d~~g~-  189 (330)
T 3hxj_A          136 -KAIYATPIVSED-G-TIYVGSNDNYLYAINPD-GTEKWRFKT--------------------NDA-ITSAASIGKDGT-  189 (330)
T ss_dssp             -SCCCSCCEECTT-S-CEEEECTTSEEEEECTT-SCEEEEEEC--------------------SSC-CCSCCEECTTCC-
T ss_pred             -CceeeeeEEcCC-C-EEEEEcCCCEEEEECCC-CCEeEEEec--------------------CCC-ceeeeEEcCCCE-
Confidence             112334455555 4 46667888999999988 543322210                    011 255567777887 


Q ss_pred             EEEEecCCeEEEEECCC
Q 004745          263 VLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       263 l~~~~~dg~v~iwd~~~  279 (732)
                      |++++  +.|..|| .+
T Consensus       190 l~v~t--~~l~~~d-~~  203 (330)
T 3hxj_A          190 IYFGS--DKVYAIN-PD  203 (330)
T ss_dssp             EEEES--SSEEEEC-TT
T ss_pred             EEEEe--CEEEEEC-CC
Confidence            45555  7888898 44

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.36  E-value=4.1e-05  Score=71.95  Aligned_cols=212  Identities=11%  Similarity=0.081  Sum_probs=124.8

Q ss_pred             ccccEeeeccCC--ceeEEEEcCCCCEEEEEeCC--CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745            9 LSQERELEGHQG--CVNAISWNSKGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus         9 ~~~~~~l~~h~~--~V~~l~~s~dg~~lasg~~d--g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      .+.++++ .|..  -...+.|++ +.++.+.+.+  ..|+++|+.+++.+.++.-...---..+.+..+   .+.+..-.
T Consensus         9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~---~ly~ltw~   83 (243)
T 3mbr_X            9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRD---RLIQLTWR   83 (243)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETT---EEEEEESS
T ss_pred             eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCC---EEEEEEee
Confidence            4566666 5654  355899986 6667777765  489999999999998873222211134444433   55555567


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      ++.+.++|..+.+          .+.++..- ..-..+  .+++..+++|- .++.|.++|..+.+....          
T Consensus        84 ~~~v~v~D~~tl~----------~~~ti~~~-~~Gwgl--t~dg~~L~vSd-gs~~l~~iDp~t~~~~~~----------  139 (243)
T 3mbr_X           84 NHEGFVYDLATLT----------PRARFRYP-GEGWAL--TSDDSHLYMSD-GTAVIRKLDPDTLQQVGS----------  139 (243)
T ss_dssp             SSEEEEEETTTTE----------EEEEEECS-SCCCEE--EECSSCEEEEC-SSSEEEEECTTTCCEEEE----------
T ss_pred             CCEEEEEECCcCc----------EEEEEeCC-CCceEE--eeCCCEEEEEC-CCCeEEEEeCCCCeEEEE----------
Confidence            8999999998743          24444321 222344  45565566554 478899999988763200          


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                        +.        +.........++.+.+. + ++.++..-.+..|.+.|.++++.+..+....-.+....      .  .
T Consensus       140 --I~--------V~~~g~~~~~lNeLe~~-~-G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~------~--~  199 (243)
T 3mbr_X          140 --IK--------VTAGGRPLDNLNELEWV-N-GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA------L--T  199 (243)
T ss_dssp             --EE--------CEETTEECCCEEEEEEE-T-TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS------C--C
T ss_pred             --EE--------EccCCcccccceeeEEe-C-CEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc------c--c
Confidence              00        00000001134555555 3 65665555688999999999987666543211111000      0  0


Q ss_pred             CCccccEEEEEEcCCCCEEEEEecC
Q 004745          245 GRSSLHLTHVTFSPNGEEVLLSYSG  269 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g~~l~~~~~d  269 (732)
                      .......+.|+++|+++.|++.+.-
T Consensus       200 ~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          200 DSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             CTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCcCCceEEEEEcCCCCEEEEECCC
Confidence            0112247899999988877777664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.26  E-value=2.5e-05  Score=73.95  Aligned_cols=209  Identities=8%  Similarity=-0.068  Sum_probs=123.2

Q ss_pred             cccEeeeccCCc--eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745           10 SQERELEGHQGC--VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus        10 ~~~~~l~~h~~~--V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      +.++++ .|...  ...+.|+ ++.++++.+.+|.|+++|+.+++.+..+ ....---..+.+..+   .+.+..-.++.
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~---~Ly~ltw~~~~  117 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE---RLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS---CEEEEESSSCE
T ss_pred             EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC---EEEEEEccCCE
Confidence            455666 34433  3678887 4677788888899999999999988877 332211233555443   56666667899


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  167 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  167 (732)
                      +.+||..+.+          .+.++.. ...-..++  +++ ..|+.+..++.|.++|..+.+...           .+ 
T Consensus       118 v~V~D~~Tl~----------~~~ti~~-~~eGwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~~-----------~I-  171 (268)
T 3nok_A          118 LFTWSGMPPQ----------RERTTRY-SGEGWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALVG-----------AV-  171 (268)
T ss_dssp             EEEEETTTTE----------EEEEEEC-SSCCCCEE--EET-TEEEEECSSSEEEEECTTTCCEEE-----------EE-
T ss_pred             EEEEECCcCc----------EEEEEeC-CCceeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEEE-----------EE-
Confidence            9999998743          2344432 22223444  445 444444558899999998876320           00 


Q ss_pred             eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                              .+.........++.+.|. + +.+++..-.++.|.+.|.++++.+..+.....        .+.........
T Consensus       172 --------~V~~~g~~v~~lNeLe~~-d-G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L--------~~~~~~~~~~~  233 (268)
T 3nok_A          172 --------QVKLRGQPVELINELECA-N-GVIYANIWHSSDVLEIDPATGTVVGVIDASAL--------TRAVAGQVTNP  233 (268)
T ss_dssp             --------ECEETTEECCCEEEEEEE-T-TEEEEEETTCSEEEEECTTTCBEEEEEECHHH--------HHHHTTTCCCT
T ss_pred             --------EeCCCCcccccccccEEe-C-CEEEEEECCCCeEEEEeCCCCcEEEEEECCCC--------cccccccccCc
Confidence                    000000111134566666 4 65665555688999999999987665532210        00000000011


Q ss_pred             cccEEEEEEcCCCCEEEEEec
Q 004745          248 SLHLTHVTFSPNGEEVLLSYS  268 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~  268 (732)
                      ....+.|+++|+++.|++.+.
T Consensus       234 ~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          234 EAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TCCEEEEEECTTTCCEEEEET
T ss_pred             CCceEEEEEcCCCCEEEEeCC
Confidence            224789999998776666654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.23  E-value=0.00047  Score=65.78  Aligned_cols=231  Identities=11%  Similarity=0.135  Sum_probs=134.9

Q ss_pred             EeeeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004745           13 RELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF   91 (732)
Q Consensus        13 ~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw   91 (732)
                      +.+.|-.+.+..++|+|++. ++++...++.|...|+. ++.+.++..+-......|++.++  +.++++.-.++.+.++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~--g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD--NQFVISDERDYAIYVI   96 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST--TEEEEEETTTTEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC--CEEEEEECCCCcEEEE
Confidence            35667777899999999766 44456778899999988 88888773333356788999887  4666665567889999


Q ss_pred             EcCCCCC-CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004745           92 NLSRFSG-RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  170 (732)
Q Consensus        92 d~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  170 (732)
                      ++..... ....... .++. ....+.....|+|.|.+.+++ ++.+.....+|.+. +...       .....++.+..
T Consensus        97 ~v~~~~~i~~~~~~~-~~~~-~~~~N~g~EGLA~d~~~~~L~-va~E~~p~~i~~~~-g~~~-------~~~l~i~~~~~  165 (255)
T 3qqz_A           97 SLTPNSEVKILKKIK-IPLQ-ESPTNCGFEGLAYSRQDHTFW-FFKEKNPIEVYKVN-GLLS-------SNELHISKDKA  165 (255)
T ss_dssp             EECTTCCEEEEEEEE-CCCS-SCCCSSCCEEEEEETTTTEEE-EEEESSSEEEEEEE-STTC-------SSCCEEEECHH
T ss_pred             EcCCCCeeeeeeeec-cccc-cccccCCcceEEEeCCCCEEE-EEECcCCceEEEEc-cccc-------CCceeeecchh
Confidence            8865321 0000000 0000 012345578999999664455 45444445555554 1100       00111111100


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  250 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (732)
                            +. .......+.+++++|..+++++.....+.|.++|... +.+..+....           .... ..+.-..
T Consensus       166 ------~~-~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~-----------g~~~-l~~~~~q  225 (255)
T 3qqz_A          166 ------LQ-RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTK-----------GSRG-LSHNIKQ  225 (255)
T ss_dssp             ------HH-HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECST-----------TGGG-CSSCCCS
T ss_pred             ------hc-cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCC-----------ccCC-cccccCC
Confidence                  00 0011235689999999888888888889999999774 3333322110           0000 0000113


Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          251 LTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       251 i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                      .-.|+|.++|+ |+..+.-+.++.|.-.
T Consensus       226 pEGia~d~~G~-lyIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          226 AEGVAMDASGN-IYIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             EEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred             CCeeEECCCCC-EEEEcCCceEEEEEec
Confidence            67899999998 6666787777777543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.16  E-value=2.4e-05  Score=83.17  Aligned_cols=262  Identities=13%  Similarity=0.104  Sum_probs=141.9

Q ss_pred             CCCCEEEEEeC-CCcEEEEeCCCCeeEEEEccCCCcCeEEEEE-e-cCCCCCEEEEEE------------------CCCc
Q 004745           29 SKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKF-V-PETSDELVVSGA------------------GDAE   87 (732)
Q Consensus        29 ~dg~~lasg~~-dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~-s-~~~~g~~l~s~~------------------~dg~   87 (732)
                      +||++|..... ++.|.+.|+.+.++...+.-.....+..+++ + |+  +.+++.++                  .++.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~--~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR--SNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB--CSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCC--CcEEEEecccccccCCCCcccccccccCce
Confidence            48888877664 5679999999999888552244456889988 4 78  47887774                  2457


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC---------------cEEEEECCCCCCC
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---------------TLRQHDFRQGSSC  152 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg---------------~i~vwd~~~~~~~  152 (732)
                      +.+.|..+.+          .+..+.- ......++++|++ +++++.+.+.               .|.+.|....+..
T Consensus       177 vtvID~~t~~----------v~~qI~V-gg~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~  244 (595)
T 1fwx_A          177 FTAVDADKWE----------VAWQVLV-SGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  244 (595)
T ss_dssp             EEEEETTTTE----------EEEEEEE-SSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             EEEEECCCCe----------EEEEEEe-CCCccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence            8888888632          1333321 1245668899965 6665655442               3566665432210


Q ss_pred             CCCCCCCcccceEEeeccC--Ccc--ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCC
Q 004745          153 PPAGSSHQECRNILLDLRC--GAK--RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  228 (732)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~  228 (732)
                      ........-....+++...  +..  ..+..    .....++.++||+...++++..+.+|.++|+.+.+...  .....
T Consensus       245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv----g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~--~~~l~  318 (595)
T 1fwx_A          245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPI----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--YENAD  318 (595)
T ss_dssp             HHHTCSEEETTEEEEECSGGGCCSSEEEEEE----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--HSCCC
T ss_pred             ccCCCeeEECcEEEEeCcccCCceeEEEEec----CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc--ccccC
Confidence            0000000001133445443  111  01110    11456799999944444555568999999998642110  00000


Q ss_pred             CCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCcceeeecCCCCceeeecc-CCC-Cc
Q 004745          229 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP-TLN-GL  305 (732)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~  305 (732)
                      +..++..        .-..+.....++|+|+| ++++... |++|.+||+.....   .+........+.-.+ .+. +|
T Consensus       319 ~~~~v~~--------~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~---~~~g~~~~~vi~kidV~yqpGh  386 (595)
T 1fwx_A          319 PRSAVVA--------EPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIR---AYAGEKVDPIKDKLDVHYQPGH  386 (595)
T ss_dssp             GGGGEEE--------CCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHH---HHHTCSCCCEEEEEECSSCEEE
T ss_pred             cccceEE--------EcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhh---hhcccccceeEEEeeccccccc
Confidence            0000000        00112237889999999 6666554 99999999877210   000000111111111 112 44


Q ss_pred             cCCCCCCccCCCccccc
Q 004745          306 ELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       306 ~~~~~~~~~~~~g~~~~  322 (732)
                      ........++|||+++.
T Consensus       387 ~~~~~g~t~~~DGk~l~  403 (595)
T 1fwx_A          387 LKTVMGETLDATNDWLV  403 (595)
T ss_dssp             EEETTTTSTTCCSSEEE
T ss_pred             ceeccceEeCCCCCEEE
Confidence            45556778899999887

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.15  E-value=0.003  Score=64.12  Aligned_cols=209  Identities=9%  Similarity=0.042  Sum_probs=128.4

Q ss_pred             CceeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           20 GCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        20 ~~V~~l~~s~dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      ..+..++|++.+..|. +-...+.|..+++........+ .........+++.+.. +.++++-...+.|.+.++.....
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~~  150 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAHR  150 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCSC
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCC-CeEEEEcCCCCeEEEEcCCCCce
Confidence            3467899997555444 4456788999998766544433 2333456789999864 45666666678899999874211


Q ss_pred             CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004745           99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  177 (732)
Q Consensus        99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (732)
                                .............+++.|.++.++++-... +.|...++......            .           +
T Consensus       151 ----------~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~------------~-----------~  197 (349)
T 3v64_C          151 ----------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR------------I-----------I  197 (349)
T ss_dssp             ----------EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE------------E-----------S
T ss_pred             ----------EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE------------E-----------E
Confidence                      122223345678999999776777676655 77888887643211            0           0


Q ss_pred             cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004745          178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  257 (732)
Q Consensus       178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  257 (732)
                      .  .........++++|+++.++++-...+.|..+|+..... ..+             .      ..... ....+++.
T Consensus       198 ~--~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~-------------~------~~~~~-~P~giav~  254 (349)
T 3v64_C          198 A--DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAV-------------I------SQGLP-HPFAITVF  254 (349)
T ss_dssp             C--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE-------------E------CSSCS-SEEEEEEE
T ss_pred             E--ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEE-------------E------eCCCC-CceEEEEE
Confidence            0  011224688999987566666666778899999874321 111             0      00011 35677773


Q ss_pred             CCCCEEEEEecCCeEEEEECCCCCCcceee
Q 004745          258 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRY  287 (732)
Q Consensus       258 p~g~~l~~~~~dg~v~iwd~~~~~~~~~~~  287 (732)
                       ++...++-...+.|..++..+++....+.
T Consensus       255 -~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          255 -EDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             -TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             -CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence             44445555567889999876666554443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.13  E-value=0.00012  Score=75.10  Aligned_cols=214  Identities=13%  Similarity=0.058  Sum_probs=121.4

Q ss_pred             eeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCeeEEEEccC-CC-cCeEEEEEecCCCCCEEEEEE----------
Q 004745           22 VNAISWNSKGSLLISGSDD------THINVWSYSSRKLLHSIETG-HS-ANVFCTKFVPETSDELVVSGA----------   83 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~~d------g~i~vWd~~~~~~~~~~~~~-h~-~~V~~~~~s~~~~g~~l~s~~----------   83 (732)
                      -..+..+|+| +++++..+      +.|.+.|..+++.+.++..+ .. .--+.+.|+|+.  +.+++..          
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~--~~mvsS~wg~p~~~~~g  216 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN--EVLVSSEWAVPNTIEDG  216 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT--TEEEECBCCCHHHHTTC
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC--CEEEEccCcCccccccc
Confidence            3456788999 77776555      78999999999999988433 21 123458889994  7777774          


Q ss_pred             ---------CCCcEEEEEcCCCCCCCCCCCCCCCceeecc--ccCceeEEEE--ecCCCcEEEEEe-----CCCcEEEEE
Q 004745           84 ---------GDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVKKLAV--EVGNPHVVWSAS-----EDGTLRQHD  145 (732)
Q Consensus        84 ---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~--~p~~~~~l~s~s-----~dg~i~vwd  145 (732)
                               ...+|.+||+.+.+          .+.++.-  .......+.|  +|++...++++.     .+++|.+|.
T Consensus       217 ~~~~~~~~~~~d~V~v~D~~~~k----------~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~  286 (462)
T 2ece_A          217 LKLEHLKDRYGNRIHFWDLRKRK----------RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWF  286 (462)
T ss_dssp             CCTTTHHHHSCCEEEEEETTTTE----------EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEE
T ss_pred             cchhhhhhccCCEEEEEECCCCc----------EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEE
Confidence                     37899999998632          1333332  1123455655  997655555555     677888877


Q ss_pred             CCCCCCCCCCCCCCcccceEEeeccCCccc-cccCCC---C-CccceEEEEecCCCCCEEEEEeC-CCeEEEEECCCCCC
Q 004745          146 FRQGSSCPPAGSSHQECRNILLDLRCGAKR-SLADPP---K-QTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLPP  219 (732)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~-~~~~v~~i~~~~~~~~~l~tg~~-dg~v~iwd~~~~~~  219 (732)
                      ...+..          .....+++...... .+...+   + .......|.++++ +++|.++.. .+.|.+||+.....
T Consensus       287 ~d~g~~----------~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D-GrfLYVSnrg~d~VavfdV~d~~~  355 (462)
T 2ece_A          287 YEDGKW----------NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD-DKFLYLSLWGIGEVRQYDISNPFK  355 (462)
T ss_dssp             EETTEE----------EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT-SCEEEEEETTTTEEEEEECSSTTS
T ss_pred             ecCCce----------eEEEEEeCCCccccccccccccccccCCCceeEEEECCC-CCEEEEEeCCCCEEEEEEecCCCC
Confidence            654220          01112222221100 000000   0 0124678999999 666666654 68999999863321


Q ss_pred             Cc---ccccCCCCCCccccccccccccCCC-ccccEEEEEEcCCCCEEEEEe
Q 004745          220 LT---SCQKRMSPPPCVNYFCPMHLSEHGR-SSLHLTHVTFSPNGEEVLLSY  267 (732)
Q Consensus       220 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~~~~  267 (732)
                      ..   .+......    .  .+.+.  .|. -...-..++++|||++|+++.
T Consensus       356 ~~lv~~I~tGG~~----~--~~~~~--~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          356 PVLTGKVKLGGIF----H--RADHP--AGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEEEEEECBTTT----T--CBCCT--TSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             cEEEEEEEeCCee----c--ccccc--ccccCCCCCCEEEEcCCCCEEEEEc
Confidence            11   11100000    0  00000  000 000245689999999999998

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.08  E-value=0.0016  Score=67.16  Aligned_cols=210  Identities=8%  Similarity=0.041  Sum_probs=128.1

Q ss_pred             CCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004745           19 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS   97 (732)
Q Consensus        19 ~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~   97 (732)
                      ...+..++|.+.+. ++++-...+.|..+++........+ .........+++.+.. +.++++-...+.|.+.++....
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~lY~~d~~~~~I~~~~~dg~~  192 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAH  192 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTT-TEEEEEETTTTEEEECBTTSCS
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCC-CeEEEEcCCCCeEEEEeCCCCc
Confidence            34567899997555 4445456788999998766544434 3333456788999864 4555666667888888876421


Q ss_pred             CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004745           98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  176 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (732)
                      .          ...+.........|++.|.++.++++-... +.|...++.....            ..+..        
T Consensus       193 ~----------~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~--------  242 (386)
T 3v65_B          193 R----------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------------RIIAD--------  242 (386)
T ss_dssp             C----------EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC--------
T ss_pred             e----------EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc------------EEEEE--------
Confidence            1          122223345678999999776666665555 6788888754321            01110        


Q ss_pred             ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004745          177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  256 (732)
Q Consensus       177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  256 (732)
                           ........++++|+++.++++-+..+.|..+|+..... ..+             ..     . ... ....+++
T Consensus       243 -----~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~-------------~~-----~-~~~-~P~giav  296 (386)
T 3v65_B          243 -----THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAV-------------IS-----Q-GLP-HPFAITV  296 (386)
T ss_dssp             -----SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEE-------------EC-----S-SCS-SEEEEEE
T ss_pred             -----CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEE-------------EE-----C-CCC-CceEEEE
Confidence                 01124678999987566666666778899999864321 111             00     0 011 3567777


Q ss_pred             cCCCCEEEEEecCCeEEEEECCCCCCcceee
Q 004745          257 SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY  287 (732)
Q Consensus       257 sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~  287 (732)
                       ..+..+++-...+.|..++..+++....+.
T Consensus       297 -~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          297 -FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             -ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             -ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence             344555555667899999976766555444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.05  E-value=0.0052  Score=70.33  Aligned_cols=213  Identities=10%  Similarity=0.107  Sum_probs=120.9

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCC
Q 004745           22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  101 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~  101 (732)
                      |.++...+++++.+ |..++.|..||..+++............|.++...++  |. |..++.++-|.+||..+......
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~--g~-lwigt~~~Gl~~~~~~~~~~~~~  250 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSP--TR-IWVATEGAGLFLINPKTKEIKNY  250 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEET--TE-EEEEEBSSCEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCC--CC-EEEEECCCCeEEEeCCCCeEEEe
Confidence            88888888887555 5555558999988776543321234567889888887  34 44455444488898875321100


Q ss_pred             CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004745          102 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  181 (732)
Q Consensus       102 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (732)
                      ...   ......-....|.++...+++ . |..|+.+ -|.+||..+....               ......   .....
T Consensus       251 ~~~---~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~---------------~~~~~~---~~~~~  306 (795)
T 4a2l_A          251 LHS---PSNPKSISSNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFA---------------SYSSNP---VENGS  306 (795)
T ss_dssp             CCC---TTCTTSCSCSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEE---------------EECCCT---TSTTS
T ss_pred             ecC---CCCccccCCCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEE---------------EEecCC---CCCCC
Confidence            000   000000113568999887744 4 4455555 5889997665311               000000   00001


Q ss_pred             CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC
Q 004745          182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  261 (732)
Q Consensus       182 ~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~  261 (732)
                      -....|.++...++ +. |..|+.++-|..|+..+.. ...+..             ... ..+-....|.++...++|.
T Consensus       307 l~~~~i~~i~~D~~-g~-lWigt~~~Gl~~~~~~~~~-~~~~~~-------------~~~-~~~l~~~~V~~i~~d~~g~  369 (795)
T 4a2l_A          307 LSQRSVRSIFMDSQ-GG-MWLGTYFGGLNYYHPIRNR-FKNIRN-------------IPY-KNSLSDNVVSCIVEDKDKN  369 (795)
T ss_dssp             CSSSCEEEEEECTT-SC-EEEEESSSCEEEECGGGGS-SEEECC-------------CTT-SSSCSCSSEEEEEECTTSC
T ss_pred             CCCCcEEEEEEeCC-cC-EEEEECCCCeEEeCCCccc-ceEEcC-------------CCC-CCCCCCCeeEEEEECCCCC
Confidence            12246899999987 54 5667777789999876432 111100             000 0111122599999999987


Q ss_pred             EEEEEecCCeEEEEECCCC
Q 004745          262 EVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       262 ~l~~~~~dg~v~iwd~~~~  280 (732)
                       |.+|+.++-|..|+..++
T Consensus       370 -lWiGt~~~Gl~~~~~~~~  387 (795)
T 4a2l_A          370 -LWIGTNDGGLNLYNPITQ  387 (795)
T ss_dssp             -EEEEESSSCEEEECTTTC
T ss_pred             -EEEEECCCCeEEEcCCCC
Confidence             667888878999988764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.04  E-value=3.3e-05  Score=82.09  Aligned_cols=183  Identities=6%  Similarity=-0.043  Sum_probs=113.5

Q ss_pred             hhccccEeeecc-CCceeEEEE-c-CCCCEEEEEe------------------CCCcEEEEeCCCCeeEEEEccCCCcCe
Q 004745            7 RRLSQERELEGH-QGCVNAISW-N-SKGSLLISGS------------------DDTHINVWSYSSRKLLHSIETGHSANV   65 (732)
Q Consensus         7 ~~~~~~~~l~~h-~~~V~~l~~-s-~dg~~lasg~------------------~dg~i~vWd~~~~~~~~~~~~~h~~~V   65 (732)
                      .+++..++++-. ......+++ + |+++++++++                  .++.+.+.|..+++.+.++..+-  ..
T Consensus       120 ~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~p  197 (595)
T 1fwx_A          120 DVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NL  197 (595)
T ss_dssp             TTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CC
T ss_pred             CCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--Cc
Confidence            345555544322 356788998 5 9999999884                  34689999999999998884332  45


Q ss_pred             EEEEEecCCCCCEEEEEECCC--------------------------------------cEEEEEcCCCCCCCCCCCCCC
Q 004745           66 FCTKFVPETSDELVVSGAGDA--------------------------------------EVRLFNLSRFSGRGLDDNAIT  107 (732)
Q Consensus        66 ~~~~~s~~~~g~~l~s~~~dg--------------------------------------~i~vwd~~~~~~~~~~~~~~~  107 (732)
                      ..++++|+  |+++++++.+.                                      .|.|.|..+..+.       .
T Consensus       198 d~~~~spd--Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~-------~  268 (595)
T 1fwx_A          198 DNCDADYE--GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASS-------L  268 (595)
T ss_dssp             CCEEECSS--SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCC-------S
T ss_pred             cceEECCC--CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCc-------e
Confidence            67889998  58888877553                                      2444444431110       0


Q ss_pred             CceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccce
Q 004745          108 PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL  187 (732)
Q Consensus       108 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  187 (732)
                      .+..+. -.....++.++||+...++++..+.+|.++|+.+.+....-. . .........+.            -....
T Consensus       269 ~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~-l-~~~~~v~~~v~------------vG~gP  333 (595)
T 1fwx_A          269 FTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN-A-DPRSAVVAEPE------------LGLGP  333 (595)
T ss_dssp             SEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC-C-CGGGGEEECCB------------CCSCE
T ss_pred             eEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccc-c-CcccceEEEcC------------CCCCc
Confidence            022222 234567899999875566666678899999998642100000 0 00000111111            11246


Q ss_pred             EEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004745          188 KSCDISSTRPHLLLVGGSDAFARLYDRRM  216 (732)
Q Consensus       188 ~~i~~~~~~~~~l~tg~~dg~v~iwd~~~  216 (732)
                      ..++|+|+ |+..++...|+.|.+||+.+
T Consensus       334 ~h~aF~~d-G~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          334 LHTAFDGR-GNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEEEECTT-SEEEEEETTTTEEEEEEHHH
T ss_pred             ceEEECCC-CeEEEEEecCCcEEEEEhhH
Confidence            78999999 56666777899999999876

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.04  E-value=0.0026  Score=72.90  Aligned_cols=205  Identities=13%  Similarity=0.110  Sum_probs=116.9

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCC-CcC-eEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004745           22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH-SAN-VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR   99 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h-~~~-V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~   99 (732)
                      |.++...++|++.+.. . +.|.+||..+++..... ..+ ... |.++...++  |. |..+..++-|..|+..+....
T Consensus       133 i~~i~~d~~g~lwi~t-~-~gl~~~~~~~~~~~~~~-~~~~~~~~i~~i~~d~~--g~-lwigt~~~Gl~~~~~~~~~~~  206 (795)
T 4a2l_A          133 VNGIEEISPEQLLIST-P-EGLIMFDIKESKFIDDS-FSTAMHKTIASTLYRQG--DQ-IYIGTSTDGLYTYSITQKTFE  206 (795)
T ss_dssp             CCEEEEEETTEEEEEE-T-TEEEEEETTTTEEECSS-SCHHHHTCCEEEEEEET--TE-EEEEESSSCEEEEETTTCCEE
T ss_pred             EEEEEECCCCCEEEEE-C-CceEEEECCCCEEEecc-CCCCCCcceEEEEECCC--CC-EEEEECCCCEEEEeCCCCeEE
Confidence            8889888888766644 3 45899998776543221 111 123 888888887  34 444666555888987753211


Q ss_pred             CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004745          100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  179 (732)
Q Consensus       100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (732)
                      .        .. .......|.++...+++ . |..++.++.|.+||..+.+..             .+......     .
T Consensus       207 ~--------~~-~~~~~~~i~~i~~d~~g-~-lwigt~~~Gl~~~~~~~~~~~-------------~~~~~~~~-----~  257 (795)
T 4a2l_A          207 K--------VI-PILGTKQIQAILQQSPT-R-IWVATEGAGLFLINPKTKEIK-------------NYLHSPSN-----P  257 (795)
T ss_dssp             E--------CC-----CCCEEEEEEEETT-E-EEEEEBSSCEEEEETTTTEEE-------------EECCCTTC-----T
T ss_pred             E--------ec-CCCCCCeeEEEEEcCCC-C-EEEEECCCCeEEEeCCCCeEE-------------EeecCCCC-----c
Confidence            0        00 01134568888877743 4 445555545889998665311             00000000     0


Q ss_pred             CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC
Q 004745          180 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  259 (732)
Q Consensus       180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~  259 (732)
                      .......|.++...++ +. |..|+.+ .|.+||..+... ..+...             ......-....|.++...++
T Consensus       258 ~~l~~~~i~~i~~d~~-g~-lWigt~~-Gl~~~~~~~~~~-~~~~~~-------------~~~~~~l~~~~i~~i~~D~~  320 (795)
T 4a2l_A          258 KSISSNYIRSLAMDSQ-NR-LWIGTFN-DLNIYHEGTDSF-ASYSSN-------------PVENGSLSQRSVRSIFMDSQ  320 (795)
T ss_dssp             TSCSCSBEEEEEECTT-SC-EEEEESS-CEEEEETTTTEE-EEECCC-------------TTSTTSCSSSCEEEEEECTT
T ss_pred             cccCCCeEEEEEEcCC-CC-EEEEeCC-hhheEcCCCCeE-EEEecC-------------CCCCCCCCCCcEEEEEEeCC
Confidence            0012236899999887 54 4445555 588999875431 111000             00001111225999999999


Q ss_pred             CCEEEEEecCCeEEEEECCC
Q 004745          260 GEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       260 g~~l~~~~~dg~v~iwd~~~  279 (732)
                      |. |.+|+.++-|..|+..+
T Consensus       321 g~-lWigt~~~Gl~~~~~~~  339 (795)
T 4a2l_A          321 GG-MWLGTYFGGLNYYHPIR  339 (795)
T ss_dssp             SC-EEEEESSSCEEEECGGG
T ss_pred             cC-EEEEECCCCeEEeCCCc
Confidence            97 67788878888898765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.02  E-value=0.00059  Score=76.08  Aligned_cols=65  Identities=6%  Similarity=-0.010  Sum_probs=51.4

Q ss_pred             EecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCC
Q 004745          613 SGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGG  678 (732)
Q Consensus       613 sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~g  678 (732)
                      ....+|.|..||..||+.+.+...+. .+....+...+.+++.++.|+.|++||.++++.+..+.-
T Consensus       433 ~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          433 AAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             GGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence            44567999999999999998877543 334445556688888999999999999999998876643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.02  E-value=0.00081  Score=65.50  Aligned_cols=190  Identities=7%  Similarity=0.035  Sum_probs=113.8

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeE----EEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCC
Q 004745           32 SLLISGSDDTHINVWSYSSRKLL----HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAIT  107 (732)
Q Consensus        32 ~~lasg~~dg~i~vWd~~~~~~~----~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  107 (732)
                      .+|..+.. +.|+.+++......    ..+.......+.+++|+++. +.++++-..++.|..+++.....         
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~-~~ly~~d~~~~~I~~~~~~g~~~---------   70 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVD-KVVYWTDISEPSIGRASLHGGEP---------   70 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTT-TEEEEEETTTTEEEEEESSSCCC---------
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCC-CEEEEEECCCCEEEEEecCCCCc---------
Confidence            34554443 47888887754321    11111123457899999974 34555555678999999874321         


Q ss_pred             CceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccce
Q 004745          108 PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL  187 (732)
Q Consensus       108 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  187 (732)
                       .............+++.|+++.++++-...+.|.++++.....            ..+..             ......
T Consensus        71 -~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~------------~~~~~-------------~~~~~P  124 (267)
T 1npe_A           71 -TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR------------RVLFD-------------TGLVNP  124 (267)
T ss_dssp             -EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-------------SSCSSE
T ss_pred             -EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE------------EEEEE-------------CCCCCc
Confidence             1122222246789999997667777777778999999864321            01110             001245


Q ss_pred             EEEEecCCCCCEEEEEeC--CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEE
Q 004745          188 KSCDISSTRPHLLLVGGS--DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  265 (732)
Q Consensus       188 ~~i~~~~~~~~~l~tg~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~  265 (732)
                      ..++++|+++.++++...  .+.|..+++.... ...+             .      ..... ....++++|++..|+.
T Consensus       125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~-------------~------~~~~~-~P~gia~d~~~~~lyv  183 (267)
T 1npe_A          125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRIL-------------A------QDNLG-LPNGLTFDAFSSQLCW  183 (267)
T ss_dssp             EEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEE-------------E------CTTCS-CEEEEEEETTTTEEEE
T ss_pred             cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEE-------------E------ECCCC-CCcEEEEcCCCCEEEE
Confidence            789999974555555433  4688888876422 1111             0      00011 3788999998877766


Q ss_pred             Eec-CCeEEEEECCC
Q 004745          266 SYS-GEHVYLMDVNH  279 (732)
Q Consensus       266 ~~~-dg~v~iwd~~~  279 (732)
                      +.. .+.|.++++..
T Consensus       184 ~d~~~~~I~~~~~~g  198 (267)
T 1npe_A          184 VDAGTHRAECLNPAQ  198 (267)
T ss_dssp             EETTTTEEEEEETTE
T ss_pred             EECCCCEEEEEecCC
Confidence            655 68999999875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.94  E-value=8.1e-07  Score=91.72  Aligned_cols=146  Identities=8%  Similarity=0.049  Sum_probs=78.6

Q ss_pred             cCCCCCCCCcccccccc-cCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceee
Q 004745          521 HTSVPGDEGRDVEANFL-HGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIK  599 (732)
Q Consensus       521 ~~~~s~~~d~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~  599 (732)
                      ..+.+++.|+.+..|+. +|+..-++..  ..+.+..+.++++.++.++.++....|+..+ ++.+.++..+....  +.
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~~~~~~--~~   84 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPFTIPEL--VQ   84 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHH--HT
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-CceeeeeeccCccc--cc
Confidence            45667778888999996 6888777765  5667777778888877765455555577755 55555555443221  11


Q ss_pred             ecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCcccc
Q 004745          600 QASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVS  676 (732)
Q Consensus       600 ~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~  676 (732)
                      ...+++ ++..|++|+.|+.|+.||.++|+++.++..|.    .+.++|++..|++++.|+.|+.||.++++....+
T Consensus        85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A           85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred             cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence            111112 45678889999999999999999999888765    2467788889999999999999999999987654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.92  E-value=0.0087  Score=59.76  Aligned_cols=211  Identities=7%  Similarity=-0.030  Sum_probs=123.7

Q ss_pred             CCceeEEEEcCCCCEE-EEEeCCCcEEEEeCCC---CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004745           19 QGCVNAISWNSKGSLL-ISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS   94 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~l-asg~~dg~i~vWd~~~---~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~   94 (732)
                      -....+++|++++..| ++-...+.|..+++..   +.....+....-.....+++.+.. ++++++-...+.|.+.++.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~-~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC-CeEEEEECCCCEEEEEeCC
Confidence            3456789999866544 4545678999999876   122222212223456889998753 3555665678899999987


Q ss_pred             CCCCCCCCCCCCCCcee-eccccCceeEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004745           95 RFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                      ...           ... ..........+++.|.++.++++-... +.|...++.....            ..+..    
T Consensus       108 g~~-----------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~------------~~~~~----  160 (316)
T 1ijq_A          108 GVK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT----  160 (316)
T ss_dssp             SSS-----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC----
T ss_pred             CCc-----------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe------------EEEEE----
Confidence            421           122 222335678999999776666665443 6788887743220            01110    


Q ss_pred             ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004745          173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  252 (732)
Q Consensus       173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (732)
                               ........++++++++.++++-...+.|..+|+.... ...+.             ..    ..... ...
T Consensus       161 ---------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~-------------~~----~~~~~-~P~  212 (316)
T 1ijq_A          161 ---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTIL-------------ED----EKRLA-HPF  212 (316)
T ss_dssp             ---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE-------------EC----TTTTS-SEE
T ss_pred             ---------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEe-------------ec----CCccC-CcE
Confidence                     0112567899999856556666667899999987432 11110             00    00001 256


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCCCCCccee
Q 004745          253 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR  286 (732)
Q Consensus       253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~  286 (732)
                      .+++. .+..+++-...+.|..++..+++....+
T Consensus       213 giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          213 SLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            67775 3555555556789999998776654443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.91  E-value=0.0061  Score=61.85  Aligned_cols=200  Identities=9%  Similarity=0.025  Sum_probs=123.7

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      .+..+|.+..+++.+++ +. ...|+..++........+ . ....+..++|++.. +.++++-...+.|..+++.....
T Consensus        33 ~d~~~C~~~~~~~~ll~-~~-~~~I~~i~~~g~~~~~~~-~-~~~~~~~l~~d~~~-~~ly~~D~~~~~I~r~~~~g~~~  107 (349)
T 3v64_C           33 PDRRSCKALGPEPVLLF-AN-RIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSNV  107 (349)
T ss_dssp             TTSSCEEESSSCCEEEE-EC-BSCEEEECTTSCCEEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCCcccccccCceeEe-ec-ccceEEEeCCCCeeEEee-c-CCCceEEEEEeccc-cEEEEEeccCCceEEEecCCCCc
Confidence            44556766666443343 33 356888888765554433 3 33457899999874 34555555678899998875321


Q ss_pred             CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004745           99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  178 (732)
Q Consensus        99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (732)
                                .............+++.+.+++++++-...+.|.+.++.....            ..+..          
T Consensus       108 ----------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~----------  155 (349)
T 3v64_C          108 ----------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW----------  155 (349)
T ss_dssp             ----------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC----------
T ss_pred             ----------eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce------------EEEEe----------
Confidence                      1112222345678999886767777777778899999864431            01110          


Q ss_pred             CCCCCccceEEEEecCCCCCEEEEEeCC-CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004745          179 DPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  257 (732)
Q Consensus       179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  257 (732)
                         ........++++|.++.++++-... +.|..+++...... .+             .      . ..-...+.|+++
T Consensus       156 ---~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~-------------~------~-~~~~~PnGla~d  211 (349)
T 3v64_C          156 ---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-II-------------A------D-THLFWPNGLTID  211 (349)
T ss_dssp             ---TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-ES-------------C------C-SSCSCEEEEEEE
T ss_pred             ---CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-EE-------------E------E-CCCCCcceEEEe
Confidence               1112457899999756666666555 78998888743211 11             0      0 001137889999


Q ss_pred             CCCCEEEEEec-CCeEEEEECCC
Q 004745          258 PNGEEVLLSYS-GEHVYLMDVNH  279 (732)
Q Consensus       258 p~g~~l~~~~~-dg~v~iwd~~~  279 (732)
                      |++..|+.+.. .+.|..+++..
T Consensus       212 ~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          212 YAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCCEEEEEECCCCEEEEEeCCC
Confidence            97777777654 67899999875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.80  E-value=0.0026  Score=70.88  Aligned_cols=53  Identities=13%  Similarity=0.218  Sum_probs=38.7

Q ss_pred             cCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccE-EEEeecCCCC-eEEEec
Q 004745          605 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVV-NCVQCHPFDC-VVATSG  657 (732)
Q Consensus       605 s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V-~~v~fsp~~~-~l~S~s  657 (732)
                      ...|.+|+.|+.|+.+++||.++|+.+..++...... .-+.+..+|+ +++.++
T Consensus       466 ~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          466 STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            3467889999999999999999999999997654221 2334456676 555554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.79  E-value=0.001  Score=63.84  Aligned_cols=174  Identities=13%  Similarity=0.069  Sum_probs=101.2

Q ss_pred             CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC--CCcEEEEEcCCCCCCCCCCCCCCCceeec-cccCceeEEEEecC
Q 004745           51 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVG  127 (732)
Q Consensus        51 ~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~  127 (732)
                      .+.+.++..+.......+.|+|+  +.++++.+.  ++.|.+.|+.+++-          +..+. +.......+++.  
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~d--g~Lyvstg~~~~s~v~~iD~~tg~v----------~~~i~l~~~~fgeGi~~~--   74 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAEN--DTLFESTGLYGRSSVRQVALQTGKV----------ENIHKMDDSYFGEGLTLL--   74 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECST--TEEEEEECSTTTCEEEEEETTTCCE----------EEEEECCTTCCEEEEEEE--
T ss_pred             ceEEEEEECCCCCCcccEEEeCC--CeEEEECCCCCCCEEEEEECCCCCE----------EEEEecCCCcceEEEEEe--
Confidence            35566663222234689999997  355555543  67999999997532          23322 111122345554  


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC
Q 004745          128 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  207 (732)
Q Consensus       128 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg  207 (732)
                      +..++++.-.++.+.++|..+.+..              -.+..+        ..   .  ...+++++. .++++..++
T Consensus        75 g~~lyv~t~~~~~v~viD~~t~~v~--------------~~i~~g--------~~---~--g~glt~Dg~-~l~vs~gs~  126 (266)
T 2iwa_A           75 NEKLYQVVWLKNIGFIYDRRTLSNI--------------KNFTHQ--------MK---D--GWGLATDGK-ILYGSDGTS  126 (266)
T ss_dssp             TTEEEEEETTCSEEEEEETTTTEEE--------------EEEECC--------SS---S--CCEEEECSS-SEEEECSSS
T ss_pred             CCEEEEEEecCCEEEEEECCCCcEE--------------EEEECC--------CC---C--eEEEEECCC-EEEEECCCC
Confidence            4466666667889999999887622              111100        00   1  122445634 455555688


Q ss_pred             eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCCCcc
Q 004745          208 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRA  284 (732)
Q Consensus       208 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~  284 (732)
                      .|.++|..+.+.+..+....                .+..-..++.+.|. +|+ |++.. .++.|.+.|..+++...
T Consensus       127 ~l~viD~~t~~v~~~I~Vg~----------------~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~~  186 (266)
T 2iwa_A          127 ILYEIDPHTFKLIKKHNVKY----------------NGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTLLG  186 (266)
T ss_dssp             EEEEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEEE
T ss_pred             eEEEEECCCCcEEEEEEECC----------------CCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEEE
Confidence            99999999877655442110                01111126778888 675 55554 57899999999976433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.76  E-value=0.0021  Score=60.95  Aligned_cols=172  Identities=8%  Similarity=-0.011  Sum_probs=104.4

Q ss_pred             eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcE
Q 004745           52 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  131 (732)
Q Consensus        52 ~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  131 (732)
                      +.+.++...-..-...+.|+.+   .++++.+.+|.|+++|+++++-          +...  -..........+.+.++
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~~---~Ly~stG~~g~v~~iD~~Tgkv----------~~~~--l~~~~FgeGit~~g~~L  108 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQG---HFFESTGHQGTLRQLSLESAQP----------VWME--RLGNIFAEGLASDGERL  108 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEETT---EEEEEETTTTEEEECCSSCSSC----------SEEE--ECTTCCEEEEEECSSCE
T ss_pred             EEEEEEcCCCccccceEEEECC---EEEEEcCCCCEEEEEECCCCcE----------EeEE--CCCCcceeEEEEeCCEE
Confidence            4556663222334578999853   7888888899999999997532          2333  12233332233345577


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEE
Q 004745          132 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  211 (732)
Q Consensus       132 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~i  211 (732)
                      ++..-.++.+.+||..+.+..              -        .+.. ...   -..++  ++ +..|+.+..++.|++
T Consensus       109 y~ltw~~~~v~V~D~~Tl~~~--------------~--------ti~~-~~e---GwGLt--~D-g~~L~vSdGs~~l~~  159 (268)
T 3nok_A          109 YQLTWTEGLLFTWSGMPPQRE--------------R--------TTRY-SGE---GWGLC--YW-NGKLVRSDGGTMLTF  159 (268)
T ss_dssp             EEEESSSCEEEEEETTTTEEE--------------E--------EEEC-SSC---CCCEE--EE-TTEEEEECSSSEEEE
T ss_pred             EEEEccCCEEEEEECCcCcEE--------------E--------EEeC-CCc---eeEEe--cC-CCEEEEECCCCEEEE
Confidence            777777899999999887632              0        0110 011   12333  44 456666667899999


Q ss_pred             EECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcc
Q 004745          212 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA  284 (732)
Q Consensus       212 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~  284 (732)
                      +|..+.+.+.++....                .+..-..++.+.|. +|+..+....++.|.+.|.++++...
T Consensus       160 iDp~T~~v~~~I~V~~----------------~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~  215 (268)
T 3nok_A          160 HEPDGFALVGAVQVKL----------------RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVG  215 (268)
T ss_dssp             ECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEE
T ss_pred             EcCCCCeEEEEEEeCC----------------CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEE
Confidence            9999987665542110                11111136777877 77544444458899999999976433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.74  E-value=0.026  Score=58.38  Aligned_cols=213  Identities=8%  Similarity=-0.020  Sum_probs=125.4

Q ss_pred             cCCceeEEEEcCCCCEEE-EEeCCCcEEEEeCCCC----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004745           18 HQGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN   92 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~la-sg~~dg~i~vWd~~~~----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd   92 (732)
                      ....+..++|++.+..|. +-...+.|+.+++...    .....+ .........+++.+.. ++++++-...+.|.+.+
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavD~~~-~~lY~~d~~~~~I~~~~  187 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVAD  187 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-CSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEC
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-eCCCCCcccEEEEecC-CceEEEECCCCeEEEEe
Confidence            345778999998655554 4446688999988652    222223 3344567899999853 45666656678899998


Q ss_pred             cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      +.....          ...+.........|++.|.++.++++-.. .+.|...++.....            ..+..   
T Consensus       188 ~~g~~~----------~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------------~~~~~---  242 (400)
T 3p5b_L          188 TKGVKR----------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT---  242 (400)
T ss_dssp             TTTCSE----------EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------------EEEEC---
T ss_pred             CCCCce----------EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------------EEEEE---
Confidence            874211          12222234557899999976666665433 36788888754331            01110   


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  251 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (732)
                                ........|+++++++.++++-...+.|..+|+..... ..+.             ..    .+... ..
T Consensus       243 ----------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~-------------~~----~~~l~-~P  293 (400)
T 3p5b_L          243 ----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTIL-------------ED----EKRLA-HP  293 (400)
T ss_dssp             ----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEE-------------EC----SSTTS-SE
T ss_pred             ----------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEE-------------eC----CCCCC-CC
Confidence                      11125688999988565555556678899999875321 1110             00    00111 24


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceee
Q 004745          252 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY  287 (732)
Q Consensus       252 ~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~  287 (732)
                      ..+++. .+.++++-...+.|..+|..+++....+.
T Consensus       294 ~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          294 FSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            567763 33445555567899999987776555443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.73  E-value=0.0055  Score=63.16  Aligned_cols=198  Identities=8%  Similarity=0.024  Sum_probs=119.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCC
Q 004745           21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  100 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~  100 (732)
                      .-+|.+..+.+ +|+.+ ....|+..++........+ . ....+..++|++.. +.++++-...+.|..+++.....  
T Consensus        78 ~~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~-~-~~~~~~gl~~d~~~-~~ly~~D~~~~~I~r~~~~g~~~--  150 (386)
T 3v65_B           78 RRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSNV--  150 (386)
T ss_dssp             SSCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCCE--
T ss_pred             CCeECCccccc-eeEee-cCccceeeccCCCcEEEEe-c-CCCccEEEEEecCC-CeEEEEeCCCCcEEEEecCCCCc--
Confidence            34455555533 34433 3357888998776554444 2 33457899999864 34555555678899999875321  


Q ss_pred             CCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCC
Q 004745          101 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  180 (732)
Q Consensus       101 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (732)
                              .............+++.+.+++++++-...+.|.+.++.....            ..+..            
T Consensus       151 --------~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~------------~~l~~------------  198 (386)
T 3v65_B          151 --------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW------------  198 (386)
T ss_dssp             --------EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC------------EEEEC------------
T ss_pred             --------EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce------------EEeec------------
Confidence                    1112222234577889886767777777777888888754321            11110            


Q ss_pred             CCCccceEEEEecCCCCCEEEEEeCC-CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC
Q 004745          181 PKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  259 (732)
Q Consensus       181 ~~~~~~v~~i~~~~~~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~  259 (732)
                       ........++++|.++.++++-... +.|..+++...... .+             .      ... -...+.|+|+|+
T Consensus       199 -~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~-------------~------~~~-~~~PnGlavd~~  256 (386)
T 3v65_B          199 -QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-II-------------A------DTH-LFWPNGLTIDYA  256 (386)
T ss_dssp             -SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EE-------------E------CSS-CSCEEEEEEEGG
T ss_pred             -CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EE-------------E------ECC-CCCeeeEEEeCC
Confidence             1112457899999856566665555 78888888643211 11             0      000 113688999987


Q ss_pred             CCEEEEEec-CCeEEEEECCC
Q 004745          260 GEEVLLSYS-GEHVYLMDVNH  279 (732)
Q Consensus       260 g~~l~~~~~-dg~v~iwd~~~  279 (732)
                      +..|+.+.. .+.|..+++..
T Consensus       257 ~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          257 GRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             GTEEEEEETTTTEEEEECTTS
T ss_pred             CCEEEEEECCCCEEEEEeCCC
Confidence            777776654 67899999875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.73  E-value=0.0035  Score=62.37  Aligned_cols=208  Identities=9%  Similarity=0.008  Sum_probs=115.2

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC--cEEEEEcCCCC
Q 004745           20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFS   97 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg--~i~vwd~~~~~   97 (732)
                      .....++|+++|+++++-..++.|..||.... ....+  .....+.++++.++  |+++++.....  .|..+|..++.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~--~~~~~p~gia~~~d--G~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA--TVEGKVSGLAFTSN--GDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE--ECSSEEEEEEECTT--SCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE--eCCCCceeEEEcCC--CcEEEEeccCCcceEEEEcCCCCe
Confidence            56778999999997777767899999997754 33333  22346889999998  46666554333  35566655432


Q ss_pred             CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004745           98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  177 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (732)
                      ..        .+.... .......++..+ ++..+++-..++.|.++|...+..             .++... +... .
T Consensus       107 ~~--------~~~~~~-~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~-------------~v~~~~-~~~~-~  161 (306)
T 2p4o_A          107 VE--------TLLTLP-DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSG-------------SIWLEH-PMLA-R  161 (306)
T ss_dssp             EE--------EEEECT-TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEE-------------EEEEEC-GGGS-C
T ss_pred             EE--------EEEeCC-CccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcE-------------eEEEEC-Cccc-c
Confidence            10        011111 122234555544 435555555678888888764320             000000 0000 0


Q ss_pred             cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004745          178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  257 (732)
Q Consensus       178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  257 (732)
                      ............+  +++++.++++-...+.|..||+.....+...          ..+.      ..  . ....++++
T Consensus       162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~----------~~~~------~~--~-~P~gi~vd  220 (306)
T 2p4o_A          162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP----------EIFV------EQ--T-NIDDFAFD  220 (306)
T ss_dssp             SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC----------EEEE------ES--C-CCSSEEEB
T ss_pred             ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc----------EEEe------cc--C-CCCCeEEC
Confidence            0001111133445  6774445566666789999998752111100          0000      00  0 24558999


Q ss_pred             CCCCEEEEEecCCeEEEEECC
Q 004745          258 PNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       258 p~g~~l~~~~~dg~v~iwd~~  278 (732)
                      ++|++.++....+.|.+++..
T Consensus       221 ~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          221 VEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TTCCEEEECBTTCCEEEECTT
T ss_pred             CCCCEEEEeCCCCeEEEECCC
Confidence            999876666667899999865

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.72  E-value=0.0027  Score=63.76  Aligned_cols=201  Identities=10%  Similarity=0.029  Sum_probs=112.4

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEE--ccC-CCcCeEEEEEec-CCCCCEEEEEEC-----------
Q 004745           21 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSI--ETG-HSANVFCTKFVP-ETSDELVVSGAG-----------   84 (732)
Q Consensus        21 ~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~--~~~-h~~~V~~~~~s~-~~~g~~l~s~~~-----------   84 (732)
                      .+..+++.+ +|++++ +...+.|..+|..+++.....  ..+ .......+++.+ +  |.++++-..           
T Consensus        81 ~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~--G~l~v~d~~~~~~~~~~~~~  157 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRT--GIVYFTDVSTLYDDRGVQQI  157 (322)
T ss_dssp             CEEEEEEETTTTEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTT--CCEEEEESCSSCCTTCHHHH
T ss_pred             CCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCC--CEEEEECCccccccccccee
Confidence            578899998 665544 444455888997766432211  011 113468899999 7  466666432           


Q ss_pred             ------CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004745           85 ------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  158 (732)
Q Consensus        85 ------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  158 (732)
                            ++.|..||..+..           +..+.......+.|+++|++..++++-...+.|.+|++......      
T Consensus       158 ~~~~~~~g~v~~~d~~~~~-----------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~------  220 (322)
T 2fp8_A          158 MDTSDKTGRLIKYDPSTKE-----------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG------  220 (322)
T ss_dssp             HHHTCCCEEEEEEETTTTE-----------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT------
T ss_pred             hcccCCCceEEEEeCCCCE-----------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC------
Confidence                  3668888876422           12222223446789999966335555566788999998753210      


Q ss_pred             CcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC----------CCeEEEEECCCCCCCcccccCCC
Q 004745          159 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMS  228 (732)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~----------dg~v~iwd~~~~~~~~~~~~~~~  228 (732)
                         ....+.           ..+   . ...++++++ |+++++...          .+.|..+|.. ++.+..+...  
T Consensus       221 ---~~~~~~-----------~~~---g-P~gi~~d~~-G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~--  278 (322)
T 2fp8_A          221 ---TAEVLV-----------KIP---N-PGNIKRNAD-GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP--  278 (322)
T ss_dssp             ---CEEEEE-----------ECS---S-EEEEEECTT-SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC--
T ss_pred             ---ccceEE-----------eCC---C-CCCeEECCC-CCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC--
Confidence               000111           111   1 567899998 666666544          4668888864 4333222110  


Q ss_pred             CCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          229 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                                     .+..-..++.+++ .++++.++....+.|..+++..
T Consensus       279 ---------------~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          279 ---------------PPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             ---------------TTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             ---------------CCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence                           1110113556666 3555444445678999999875

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.71  E-value=0.014  Score=58.10  Aligned_cols=208  Identities=9%  Similarity=0.057  Sum_probs=124.1

Q ss_pred             ceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004745           21 CVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR   99 (732)
Q Consensus        21 ~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~   99 (732)
                      .+.+++|.+.+ .++.+-...+.|..+++........+....-.....+++.+.. +.++++-...+.|.++++..... 
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~~-  113 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSLR-  113 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCSC-
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC-CeEEEEECCCCEEEEEECCCCcE-
Confidence            46688999854 4555555678899999876632211112222456789998764 45666666678899999874211 


Q ss_pred             CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004745          100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  178 (732)
Q Consensus       100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (732)
                               .............+++.|.++.++++-. ..+.|...++.....            ..+..          
T Consensus       114 ---------~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~----------  162 (318)
T 3sov_A          114 ---------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN----------  162 (318)
T ss_dssp             ---------EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC------------EEEEC----------
T ss_pred             ---------EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe------------EEEEE----------
Confidence                     1112233456789999986656665542 356788887754321            01110          


Q ss_pred             CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004745          179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  258 (732)
Q Consensus       179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  258 (732)
                         ........++++++++.++++-+..+.|..+|+.... ...+             .      .+... ....+++..
T Consensus       163 ---~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~-------------~------~~~~~-~P~glav~~  218 (318)
T 3sov_A          163 ---SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAV-------------V------KGSLP-HPFALTLFE  218 (318)
T ss_dssp             ---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE-------------E------CSCCS-CEEEEEEET
T ss_pred             ---CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEE-------------e------cCCCC-CceEEEEeC
Confidence               0112457899999756666666677899999987432 1111             0      00111 256677753


Q ss_pred             CCCEEEEEecCCeEEEEECCCCCCccee
Q 004745          259 NGEEVLLSYSGEHVYLMDVNHAGGRAMR  286 (732)
Q Consensus       259 ~g~~l~~~~~dg~v~iwd~~~~~~~~~~  286 (732)
                       +..+++-...+.|..++..+++....+
T Consensus       219 -~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          219 -DILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             -TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             -CEEEEEecCCCeEEEEECCCCCceEEE
Confidence             344455555789999999877654443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.68  E-value=0.0027  Score=60.17  Aligned_cols=171  Identities=12%  Similarity=0.136  Sum_probs=100.7

Q ss_pred             eeEEEEccCCCcC--eEEEEEecCCCCCEEEEEECCC--cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC
Q 004745           52 KLLHSIETGHSAN--VFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG  127 (732)
Q Consensus        52 ~~~~~~~~~h~~~--V~~~~~s~~~~g~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~  127 (732)
                      +.+.++  .|...  ...+.|+ +  +.++.+.+.+|  .|+++|+.+++-          +....- ..........+.
T Consensus        32 ~vv~~~--phd~~~ftqGL~~~-~--~~LyestG~~g~S~v~~vD~~Tgkv----------~~~~~l-~~~~FgeGit~~   95 (262)
T 3nol_A           32 QIVHSY--PHDTKAFTEGFFYR-N--GYFYESTGLNGRSSIRKVDIESGKT----------LQQIEL-GKRYFGEGISDW   95 (262)
T ss_dssp             EEEEEE--ECCTTCEEEEEEEE-T--TEEEEEEEETTEEEEEEECTTTCCE----------EEEEEC-CTTCCEEEEEEE
T ss_pred             EEEEEe--cCCCCcccceEEEE-C--CEEEEECCCCCCceEEEEECCCCcE----------EEEEec-CCccceeEEEEe
Confidence            455566  45433  4889998 4  47777777766  899999997532          233321 223333333333


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC
Q 004745          128 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  207 (732)
Q Consensus       128 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg  207 (732)
                      +.++++..-.++.+.++|..+.+...                      .+.. ..     ....++++ +..|+.+..++
T Consensus        96 g~~ly~ltw~~~~v~v~D~~t~~~~~----------------------ti~~-~~-----eG~glt~d-g~~L~~SdGs~  146 (262)
T 3nol_A           96 KDKIVGLTWKNGLGFVWNIRNLRQVR----------------------SFNY-DG-----EGWGLTHN-DQYLIMSDGTP  146 (262)
T ss_dssp             TTEEEEEESSSSEEEEEETTTCCEEE----------------------EEEC-SS-----CCCCEEEC-SSCEEECCSSS
T ss_pred             CCEEEEEEeeCCEEEEEECccCcEEE----------------------EEEC-CC-----CceEEecC-CCEEEEECCCC
Confidence            54666666678899999998877320                      0110 01     11122345 34555555578


Q ss_pred             eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcc
Q 004745          208 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA  284 (732)
Q Consensus       208 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~  284 (732)
                      .|.++|..+.+.+..+....                .+..-..++.+.|. +|+..+....++.|.+.|.++++...
T Consensus       147 ~i~~iDp~T~~v~~~I~V~~----------------~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~  206 (262)
T 3nol_A          147 VLRFLDPESLTPVRTITVTA----------------HGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTG  206 (262)
T ss_dssp             EEEEECTTTCSEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEE
T ss_pred             eEEEEcCCCCeEEEEEEecc----------------CCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEE
Confidence            89999999887665542110                11111135667776 67644444458899999999976443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.64  E-value=0.0052  Score=63.19  Aligned_cols=188  Identities=9%  Similarity=0.089  Sum_probs=110.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004745           30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  109 (732)
Q Consensus        30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  109 (732)
                      ++..++.++.++.|..+|..+++.+.++. ............ +   ..++.++.++.|..+|..+++.          +
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~p~~~-~---~~v~v~~~~g~l~~~d~~tG~~----------~  166 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTK-VAGEALSRPVVS-D---GLVLIHTSNGQLQALNEADGAV----------K  166 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEE-CSSCCCSCCEEE-T---TEEEEECTTSEEEEEETTTCCE----------E
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEe-CCCceEcCCEEE-C---CEEEEEcCCCeEEEEECCCCcE----------E
Confidence            35577778889999999999999887762 222211111222 3   5788888899999999987532          2


Q ss_pred             eeeccccCce-----eEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc---ccCC-
Q 004745          110 ALYQCHTRRV-----KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS---LADP-  180 (732)
Q Consensus       110 ~~~~~h~~~v-----~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-  180 (732)
                      ..........     ......  + ..++.++.++.|..+|..+++.              +|.........   +... 
T Consensus       167 W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~--------------~w~~~~~~~~~~~~~~~~~  229 (376)
T 3q7m_A          167 WTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQM--------------IWQQRISQATGSTEIDRLS  229 (376)
T ss_dssp             EEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCE--------------EEEEECCC-----------
T ss_pred             EEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcE--------------EEEEecccCCCCccccccc
Confidence            2222111100     112222  3 4566788889999999988762              23221110000   0000 


Q ss_pred             CCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC
Q 004745          181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  260 (732)
Q Consensus       181 ~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g  260 (732)
                      .....++    ..   +..+++++.++.+..+|.++++.+-...                      .. ....+..  ++
T Consensus       230 ~~~~~p~----~~---~~~v~~~~~~g~l~~~d~~tG~~~w~~~----------------------~~-~~~~~~~--~~  277 (376)
T 3q7m_A          230 DVDTTPV----VV---NGVVFALAYNGNLTALDLRSGQIMWKRE----------------------LG-SVNDFIV--DG  277 (376)
T ss_dssp             CCCCCCE----EE---TTEEEEECTTSCEEEEETTTCCEEEEEC----------------------CC-CEEEEEE--ET
T ss_pred             ccCCCcE----EE---CCEEEEEecCcEEEEEECCCCcEEeecc----------------------CC-CCCCceE--EC
Confidence            0000111    11   3478888889999999999886543221                      00 1333333  35


Q ss_pred             CEEEEEecCCeEEEEECCCCC
Q 004745          261 EEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       261 ~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      ..|++++.++.|..+|..+++
T Consensus       278 ~~l~~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          278 NRIYLVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             TEEEEEETTCCEEEEETTTCC
T ss_pred             CEEEEEcCCCeEEEEECCCCc
Confidence            678889999999999998864

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.63  E-value=0.0026  Score=72.09  Aligned_cols=116  Identities=12%  Similarity=0.091  Sum_probs=70.6

Q ss_pred             ceeEEEEc-CCCCEEEEEeC-C----CcEEEEeCCCC-eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-----CcE
Q 004745           21 CVNAISWN-SKGSLLISGSD-D----THINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEV   88 (732)
Q Consensus        21 ~V~~l~~s-~dg~~lasg~~-d----g~i~vWd~~~~-~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-----g~i   88 (732)
                      .+...+|| |||++||-+.. +    .+|+++|+.++ +.+...   -......+.|+|++  +.|+....|     ..|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspDg--~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPDH--TSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSST--TEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecCC--CEEEEEEECCCCCCCEE
Confidence            67889999 99998885532 2    25999999998 633211   11224578899994  666666554     257


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeec-cccCceeEEEEecCCCcEEEEEeC--CCcEEEEECCCC
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQG  149 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~--dg~i~vwd~~~~  149 (732)
                      .++++.+.....        ...+. ........+.|+|++..++++...  ...|.++|+.++
T Consensus       250 ~~~~lgt~~~~~--------~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          250 WRHVMGKLQSED--------VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEETTSCGGGC--------EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEECCCCchhc--------EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            777776532111        12222 222345678999976434444432  335778888765

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.60  E-value=0.0035  Score=62.92  Aligned_cols=204  Identities=9%  Similarity=0.029  Sum_probs=116.0

Q ss_pred             eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccC-------------------CCcCeEEEEEecCCCC
Q 004745           16 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG-------------------HSANVFCTKFVPETSD   76 (732)
Q Consensus        16 ~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~-------------------h~~~V~~~~~s~~~~g   76 (732)
                      .+.-....+++|.++|+++.++..++.|..||..+++... +...                   ....+.++++.++.  
T Consensus        15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~--   91 (322)
T 2fp8_A           15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN--   91 (322)
T ss_dssp             ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT--
T ss_pred             CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCC--
Confidence            3333456788999999988888889999999987654332 2110                   11357899999832  


Q ss_pred             CEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce-eecc-ccCceeEEEEec-CCCcEEEEEeC----------------
Q 004745           77 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA-LYQC-HTRRVKKLAVEV-GNPHVVWSASE----------------  137 (732)
Q Consensus        77 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~-h~~~v~~l~~~p-~~~~~l~s~s~----------------  137 (732)
                      ..|+.+...+.|..+|..++....        +. ...+ .....+.+++.+ ++ +++++-..                
T Consensus        92 g~l~v~d~~~~i~~~d~~~g~~~~--------~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~  162 (322)
T 2fp8_A           92 NQLYIVDCYYHLSVVGSEGGHATQ--------LATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSD  162 (322)
T ss_dssp             TEEEEEETTTEEEEECTTCEECEE--------EESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTC
T ss_pred             CcEEEEECCCCEEEEeCCCCEEEE--------ecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccC
Confidence            345555555558888876421100        11 0111 113467788888 55 55555322                


Q ss_pred             -CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEE-EEeCCCeEEEEECC
Q 004745          138 -DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAFARLYDRR  215 (732)
Q Consensus       138 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-tg~~dg~v~iwd~~  215 (732)
                       ++.|..||..+++..            .+..              .......++++|+ ++.|+ +-..++.|.+|++.
T Consensus       163 ~~g~v~~~d~~~~~~~------------~~~~--------------~~~~p~gia~~~d-g~~lyv~d~~~~~I~~~~~~  215 (322)
T 2fp8_A          163 KTGRLIKYDPSTKETT------------LLLK--------------ELHVPGGAEVSAD-SSFVLVAEFLSHQIVKYWLE  215 (322)
T ss_dssp             CCEEEEEEETTTTEEE------------EEEE--------------EESCCCEEEECTT-SSEEEEEEGGGTEEEEEESS
T ss_pred             CCceEEEEeCCCCEEE------------Eecc--------------CCccCcceEECCC-CCEEEEEeCCCCeEEEEECC
Confidence             245666665543210            0000              0113457899998 56554 44667899999987


Q ss_pred             CCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec----------CCeEEEEECC
Q 004745          216 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVN  278 (732)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~----------dg~v~iwd~~  278 (732)
                      ... ....          ..+.  ..  .    . ...++++++|++.++...          .+.|..+|..
T Consensus       216 ~~~-~~~~----------~~~~--~~--~----g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          216 GPK-KGTA----------EVLV--KI--P----N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             STT-TTCE----------EEEE--EC--S----S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred             CCc-CCcc----------ceEE--eC--C----C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence            532 1100          0110  00  1    1 567899999986666544          3567777754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.57  E-value=0.064  Score=61.11  Aligned_cols=216  Identities=8%  Similarity=0.052  Sum_probs=119.9

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEcc------CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004745           20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL   93 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~------~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~   93 (732)
                      ..|.++...++|.+.+. ..+ -+.+||..+++.......      .....|.++...++   ..|..|+..+-|.++|.
T Consensus       211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~---g~lWigt~~~Gl~~~~~  285 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKD---NKLWIATELNGIMILDL  285 (781)
T ss_dssp             SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTT---SEEEEEESSSCEEEEET
T ss_pred             CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCC---CCEEEEeCCCCeEEECC
Confidence            56889998888886664 444 589999877654432211      12356899988877   35556666456888888


Q ss_pred             CCCCCCCCCCCCCC----CceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004745           94 SRFSGRGLDDNAIT----PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  169 (732)
Q Consensus        94 ~~~~~~~~~~~~~~----~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  169 (732)
                      .+..-.........    ......-....|.++...+++  .|..|+.++-|..++.......             .+..
T Consensus       286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~-------------~~~~  350 (781)
T 3v9f_A          286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFH-------------TWSY  350 (781)
T ss_dssp             TCC---------CEEECBCSSTTSBSSSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCE-------------EEC-
T ss_pred             CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcce-------------eecc
Confidence            75321110000000    000001124568888887744  3556777778999987655311             0000


Q ss_pred             cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004745          170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                      ....   ..........|.++...++ +. |..|+.++-|..||..+.... .+             ...    ......
T Consensus       351 ~~~~---~~~~~l~~~~v~~i~~d~~-g~-lWigt~~~Gl~~~~~~~~~~~-~~-------------~~~----~~~~~~  407 (781)
T 3v9f_A          351 SPTQ---MNESSLSNKVVSSVCDDGQ-GK-LWIGTDGGGINVFENGKRVAI-YN-------------KEN----RELLSN  407 (781)
T ss_dssp             ---C---CCSSCCSSSCEEEEEECTT-SC-EEEEEBSSCEEEEETTEEEEE-CC----------------------CCCS
T ss_pred             Cccc---cccCCCCCcceEEEEEcCC-CC-EEEEeCCCcEEEEECCCCeEE-Ec-------------cCC----CCCCCc
Confidence            0000   0000012236888888876 44 556676667899998653211 00             000    011112


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .|.++...++|. |.+|+.++-|..++..+
T Consensus       408 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~  436 (781)
T 3v9f_A          408 SVLCSLKDSEGN-LWFGTYLGNISYYNTRL  436 (781)
T ss_dssp             BEEEEEECTTSC-EEEEETTEEEEEECSSS
T ss_pred             ceEEEEECCCCC-EEEEeccCCEEEEcCCC
Confidence            599999988887 55677777788888766

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.55  E-value=0.00093  Score=67.26  Aligned_cols=176  Identities=9%  Similarity=0.042  Sum_probs=106.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce
Q 004745           31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  110 (732)
Q Consensus        31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  110 (732)
                      +..|..++.++.|..+|.. ++..... ......+.++...++   ..+..++.++.|..+|.. +.          .+.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~~~~---g~l~vgt~~~~l~~~d~~-g~----------~~~  170 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRF-KTKKAIYATPIVSED---GTIYVGSNDNYLYAINPD-GT----------EKW  170 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEECTT---SCEEEECTTSEEEEECTT-SC----------EEE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEE-cCCCceeeeeEEcCC---CEEEEEcCCCEEEEECCC-CC----------EeE
Confidence            4457778888999999988 7776666 344555666767666   346667778999999987 32          133


Q ss_pred             eeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEE
Q 004745          111 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  190 (732)
Q Consensus       111 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  190 (732)
                      .+......+.++...+++ .++ .++  +.|..+| .+++.              ++....           ....+.++
T Consensus       171 ~~~~~~~~~~~~~~d~~g-~l~-v~t--~~l~~~d-~~g~~--------------~~~~~~-----------~~~~~~~~  220 (330)
T 3hxj_A          171 RFKTNDAITSAASIGKDG-TIY-FGS--DKVYAIN-PDGTE--------------KWNFYA-----------GYWTVTRP  220 (330)
T ss_dssp             EEECSSCCCSCCEECTTC-CEE-EES--SSEEEEC-TTSCE--------------EEEECC-----------SSCCCSCC
T ss_pred             EEecCCCceeeeEEcCCC-EEE-EEe--CEEEEEC-CCCcE--------------EEEEcc-----------CCcceece
Confidence            333334556667776633 444 444  7899999 55441              121111           11245666


Q ss_pred             EecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCC
Q 004745          191 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE  270 (732)
Q Consensus       191 ~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg  270 (732)
                      ...++ + .|..++.++.|..+|. +++.+..+..                    ... .+.++.+.+++. |++++.+|
T Consensus       221 ~~~~~-g-~l~v~t~~~gl~~~~~-~g~~~~~~~~--------------------~~~-~~~~~~~~~~g~-l~v~t~~g  275 (330)
T 3hxj_A          221 AISED-G-TIYVTSLDGHLYAINP-DGTEKWRFKT--------------------GKR-IESSPVIGNTDT-IYFGSYDG  275 (330)
T ss_dssp             EECTT-S-CEEEEETTTEEEEECT-TSCEEEEEEC--------------------SSC-CCSCCEECTTSC-EEEECTTC
T ss_pred             EECCC-C-eEEEEcCCCeEEEECC-CCCEeEEeeC--------------------CCC-ccccceEcCCCe-EEEecCCC
Confidence            77776 4 4666777888888875 3332221110                    000 122345566664 77888898


Q ss_pred             eEEEEEC
Q 004745          271 HVYLMDV  277 (732)
Q Consensus       271 ~v~iwd~  277 (732)
                      .|..+|.
T Consensus       276 gl~~~d~  282 (330)
T 3hxj_A          276 HLYAINP  282 (330)
T ss_dssp             EEEEECT
T ss_pred             CEEEECC
Confidence            9999985

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.54  E-value=0.037  Score=62.25  Aligned_cols=211  Identities=8%  Similarity=-0.022  Sum_probs=124.0

Q ss_pred             cCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCC----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004745           18 HQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN   92 (732)
Q Consensus        18 h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd   92 (732)
                      ....+.+|+|.+... ++++-...+.|+.+++...    .....+ .........|++.+.+ ++++++-...+.|.+.+
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-~~~l~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~  499 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVAD  499 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-ecCCCCcceeeeeecC-CcEEEEecCCCeEEEEe
Confidence            345677899998544 4455556678988888753    222223 3344567789999874 35566666778999999


Q ss_pred             cCCCCCCCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004745           93 LSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  170 (732)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  170 (732)
                      +....           ...+ .........|++.|.++.++++-... +.|...++.....            ..+..  
T Consensus       500 ldG~~-----------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~------------~~lv~--  554 (791)
T 3m0c_C          500 TKGVK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT--  554 (791)
T ss_dssp             TTSSS-----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC--
T ss_pred             CCCCe-----------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce------------EEEEe--
Confidence            87421           2222 22345688999999766666665333 6788888754331            11110  


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  250 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (732)
                                 ........|++++.+++++++-...+.|..+++...... .+.             ..    .+... .
T Consensus       555 -----------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-~v~-------------~~----~~~l~-~  604 (791)
T 3m0c_C          555 -----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TIL-------------ED----EKRLA-H  604 (791)
T ss_dssp             -----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-------------EC----TTTTS-S
T ss_pred             -----------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE-EEe-------------cC----CCccC-C
Confidence                       112257889999875655555556678999998654321 110             00    00111 2


Q ss_pred             EEEEEEcCCCCEEEEE-ecCCeEEEEECCCCCCcceee
Q 004745          251 LTHVTFSPNGEEVLLS-YSGEHVYLMDVNHAGGRAMRY  287 (732)
Q Consensus       251 i~~l~~sp~g~~l~~~-~~dg~v~iwd~~~~~~~~~~~  287 (732)
                      ..+|++.  +.+|+.+ ...+.|...|..+++....+.
T Consensus       605 P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          605 PFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence            4466664  3355555 456889999988876555443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.52  E-value=0.22  Score=56.68  Aligned_cols=223  Identities=9%  Similarity=0.002  Sum_probs=118.3

Q ss_pred             CceeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeeEEEEcc----CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004745           20 GCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIET----GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL   93 (732)
Q Consensus        20 ~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~~~~~~~~~~----~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~   93 (732)
                      ..|.++....  +|.+.+ +..++.|..+|..+++.......    .....|.++...++   ..|..+..++-|..||.
T Consensus       115 ~~i~~i~~d~~~~g~lwi-~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~---g~lwigt~~~Gl~~~~~  190 (781)
T 3v9f_A          115 NDVTHITSSVQAGKGLWV-CTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAED---GKLYIGHVEGGLSILSL  190 (781)
T ss_dssp             SCEEEEEECSSTTSEEEE-EESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEET---TEEEEEETTTEEEEEET
T ss_pred             CcceEEEecCccCCCEEE-EECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCC---CCEEEEecCCCeEEEcC
Confidence            3688888887  776544 55445689999887765432110    12346888888777   34555666656888987


Q ss_pred             CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745           94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                      .+..-.....   .......-....|.++...+++ .+. .++.+ -|.+||..+.+...               .....
T Consensus       191 ~~~~~~~~~~---~~~~~~~l~~~~i~~i~~d~~g-~lw-igt~~-Gl~~~d~~~~~~~~---------------~~~~~  249 (781)
T 3v9f_A          191 NDKSVKHFVH---DPQNPNSLPGNDVRCIYKDTNG-NIW-IGTSK-GLALFNANTETFTN---------------FHNNP  249 (781)
T ss_dssp             TTTEEEEECC-----------CCSSEEEEEECTTC-CEE-EEETT-EEEEEETTTTEEEC--------------------
T ss_pred             CCCceEeeec---CCCCcccCCCCceeEEEEcCCC-CEE-EEeCC-cHheECCCCCcEEE---------------EEcCC
Confidence            7532110000   0000000013468888877643 444 45555 68899976654110               00000


Q ss_pred             cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004745          174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  253 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (732)
                      .   .........|.++...++ + .|..|+..+-|.++|..+..... +..     .....+. ......+-....|.+
T Consensus       250 ~---~~~~l~~~~i~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~-~~~-----~~f~~~~-~~~~~~~l~~~~v~~  317 (781)
T 3v9f_A          250 G---NIHGALSSYIFSIKQLKD-N-KLWIATELNGIMILDLQQNQFLL-PEQ-----IRFEFIR-EGDNNYSLSNASARY  317 (781)
T ss_dssp             ---------CCCCEEEEEECTT-S-EEEEEESSSCEEEEETTCC---------------CEEEC-BCSSTTSBSSSCEEE
T ss_pred             C---ccccccCceEEEEEECCC-C-CEEEEeCCCCeEEECCCCCeeee-eec-----ccccccc-CCCCCCCCCCCeEEE
Confidence            0   000012236888888877 4 56667765678899987653211 100     0000000 000001111225999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          254 VTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       254 l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      +...++|. |.+|+.++-|..|+..+.
T Consensus       318 i~~D~~g~-lWigt~~~Gl~~~~~~~~  343 (781)
T 3v9f_A          318 IFQDSFNN-IWIGTWGGGINFISNAPP  343 (781)
T ss_dssp             EEECSSCC-EEEEEBSSCEEEECSSCC
T ss_pred             EEEeCCCC-EEEEecCCeEEEeCCCCC
Confidence            99999987 677887888888987763

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.50  E-value=0.027  Score=56.11  Aligned_cols=184  Identities=13%  Similarity=0.075  Sum_probs=111.7

Q ss_pred             CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCcee
Q 004745           41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK  120 (732)
Q Consensus        41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~  120 (732)
                      ..|+..|+.+.+....+  .....+.+++|++.. +.++++-...+.|..+++.......      .....+........
T Consensus        10 ~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~-~~ly~~D~~~~~I~~~~~~g~~~~~------~~~~~~~~~~~~p~   80 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQAPD   80 (316)
T ss_dssp             SSEEEEETTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCC
T ss_pred             CeEEEEECCCcceEehh--cCCCceEEEEEEeCC-CEEEEEECCCCcEEEEECCCCCCCc------ccEEEEeCCCCCcC
Confidence            56999999887665554  334567899999874 3455555567899999987410000      00111222224567


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEE
Q 004745          121 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL  200 (732)
Q Consensus       121 ~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l  200 (732)
                      .+++.+.+++++++-...+.|.+.++.....            ..+..             ........++++|.++.++
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~------------~~~~~-------------~~~~~P~~iavdp~~g~ly  135 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVVDPVHGFMY  135 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSE------------EEEEE-------------CTTCCEEEEEEETTTTEEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCce------------EEEEE-------------CCCCCcceEEeCCCCCEEE
Confidence            8999876667777777788999999764321            11111             0112457899999756555


Q ss_pred             EEEeCC-CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECC
Q 004745          201 LVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVN  278 (732)
Q Consensus       201 ~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~  278 (732)
                      ++.... +.|...++.... ...+             .      ... -...+.++++|++..|+.+.. .+.|..+|+.
T Consensus       136 ~~d~~~~~~I~~~~~dG~~-~~~~-------------~------~~~-~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          136 WTDWGTPAKIKKGGLNGVD-IYSL-------------V------TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             EEECSSSCEEEEEETTSCC-EEEE-------------E------CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEccCCCCeEEEEcCCCCC-eEEE-------------E------ECC-CCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence            554433 688888876422 1111             0      000 114788999998877776654 6799999987


Q ss_pred             C
Q 004745          279 H  279 (732)
Q Consensus       279 ~  279 (732)
                      .
T Consensus       195 g  195 (316)
T 1ijq_A          195 G  195 (316)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.49  E-value=0.0039  Score=69.49  Aligned_cols=115  Identities=16%  Similarity=0.070  Sum_probs=71.7

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------cEEEEeCCCCeeE--EEEccCCCcCeEEEEEecCCCCCEEEEEEC-CCcE
Q 004745           24 AISWNS-KGSLLISGSDDT-----------HINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAG-DAEV   88 (732)
Q Consensus        24 ~l~~s~-dg~~lasg~~dg-----------~i~vWd~~~~~~~--~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg~i   88 (732)
                      .+++.+ ++++++.|+.+.           .+.+||+.+++..  ..+...+.....++++.++  |.+++.|+. +..+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~--g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN--GQIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT--SCEEEECSSSTTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC--CCEEEeCCCCCCce
Confidence            566777 888888887643           5889999887633  2332233334445777777  588888884 5689


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CC-----CcEEEEECCCCC
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-ED-----GTLRQHDFRQGS  150 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~d-----g~i~vwd~~~~~  150 (732)
                      .+||+.+..-..        +..+.. ...-.+++..+ ++++++.|+ .+     ..+.+||..+.+
T Consensus       268 ~~yd~~t~~W~~--------~~~~~~-~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          268 SLYDSSSDSWIP--------GPDMQV-ARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEEGGGTEEEE--------CCCCSS-CCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEecCcCCceeE--------CCCCCc-cccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            999998643211        111211 11112344555 447888887 34     468999987653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.48  E-value=0.0091  Score=56.02  Aligned_cols=173  Identities=13%  Similarity=0.034  Sum_probs=101.0

Q ss_pred             eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC--cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC
Q 004745           52 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP  129 (732)
Q Consensus        52 ~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  129 (732)
                      +.+.++......-...+.|+++   .++.+.+.+|  .|+.+|+.+++-          +....- ..........+.+.
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~~---~LyestG~~g~S~v~~vD~~tgkv----------~~~~~l-~~~~fgeGi~~~~~   75 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLRG---HLYESTGETGRSSVRKVDLETGRI----------LQRAEV-PPPYFGAGIVAWRD   75 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEETT---EEEEEECCTTSCEEEEEETTTCCE----------EEEEEC-CTTCCEEEEEEETT
T ss_pred             EEEEEcCCCCccccccEEEECC---EEEEECCCCCCceEEEEECCCCCE----------EEEEeC-CCCcceeEEEEeCC
Confidence            4555663233345679999874   6777777754  899999997532          232221 22233332333355


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeE
Q 004745          130 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  209 (732)
Q Consensus       130 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v  209 (732)
                      ++++..-.++.+.++|..+.+..              -        .+.. ..   .-..++  ++ +..|+.+..++.|
T Consensus        76 ~ly~ltw~~~~v~v~D~~tl~~~--------------~--------ti~~-~~---~Gwglt--~d-g~~L~vSdgs~~l  126 (243)
T 3mbr_X           76 RLIQLTWRNHEGFVYDLATLTPR--------------A--------RFRY-PG---EGWALT--SD-DSHLYMSDGTAVI  126 (243)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEE--------------E--------EEEC-SS---CCCEEE--EC-SSCEEEECSSSEE
T ss_pred             EEEEEEeeCCEEEEEECCcCcEE--------------E--------EEeC-CC---CceEEe--eC-CCEEEEECCCCeE
Confidence            66666677899999999887632              0        0110 11   112333  44 3455555568899


Q ss_pred             EEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcc
Q 004745          210 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA  284 (732)
Q Consensus       210 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~  284 (732)
                      .++|..+.+.+.++....                .+..-..++.+.+. +|+..+....+..|.+.|.++++...
T Consensus       127 ~~iDp~t~~~~~~I~V~~----------------~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~  184 (243)
T 3mbr_X          127 RKLDPDTLQQVGSIKVTA----------------GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVA  184 (243)
T ss_dssp             EEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEE
T ss_pred             EEEeCCCCeEEEEEEEcc----------------CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEE
Confidence            999999987665542110                11111135667766 66644444458899999999976443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.47  E-value=0.036  Score=60.30  Aligned_cols=61  Identities=10%  Similarity=-0.079  Sum_probs=47.0

Q ss_pred             CCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccC
Q 004745          616 DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG  677 (732)
Q Consensus       616 ~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~  677 (732)
                      .+|.|..||..+|+.+.++... ..+.+..+...+.+++.++.|+.|++||.++++.+..+.
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence            4689999999999998887643 233334444456677778999999999999999887654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.44  E-value=0.02  Score=56.84  Aligned_cols=202  Identities=10%  Similarity=0.049  Sum_probs=110.4

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg--~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      ......+++.++|+++++.....  .|..+|..+++...............++..+.  +..+++-..++.|.++|....
T Consensus        71 ~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~--~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A           71 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD--TQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSS--SEEEEEETTTTEEEEEETTTT
T ss_pred             CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCC--CcEEEEECCCCeEEEEeCCCC
Confidence            34678899999999766654332  46677777776543331122223345555554  244444445888888887642


Q ss_pred             CCCCCC-CCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCCCCCCCCCcccceEEeeccCCcc
Q 004745           97 SGRGLD-DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus        97 ~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                      ...... ...... ..........+.|  +|++..++++-...+.|..+++.. +..         .....+...     
T Consensus       149 ~~~v~~~~~~~~~-~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~---------~~~~~~~~~-----  211 (306)
T 2p4o_A          149 SGSIWLEHPMLAR-SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP---------GEPEIFVEQ-----  211 (306)
T ss_dssp             EEEEEEECGGGSC-SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB---------CCCEEEEES-----
T ss_pred             cEeEEEECCcccc-ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC---------CccEEEecc-----
Confidence            111000 000000 0001111234555  776655666777778999999865 221         000111110     


Q ss_pred             ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  254 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  254 (732)
                                .....++++++ ++++++....+.|.++|.. ++... +          ...       ... ....+++
T Consensus       212 ----------~~P~gi~vd~d-G~l~va~~~~~~V~~~~~~-G~~~~-~----------~~~-------~~~-~~~p~~~  260 (306)
T 2p4o_A          212 ----------TNIDDFAFDVE-GNLYGATHIYNSVVRIAPD-RSTTI-I----------AQA-------EQG-VIGSTAV  260 (306)
T ss_dssp             ----------CCCSSEEEBTT-CCEEEECBTTCCEEEECTT-CCEEE-E----------ECG-------GGT-CTTEEEE
T ss_pred             ----------CCCCCeEECCC-CCEEEEeCCCCeEEEECCC-CCEEE-E----------eec-------ccc-cCCceEE
Confidence                      13356788998 6777777778899999975 32210 0          000       000 0147899


Q ss_pred             EEc---CCCCEEEEEecCC
Q 004745          255 TFS---PNGEEVLLSYSGE  270 (732)
Q Consensus       255 ~~s---p~g~~l~~~~~dg  270 (732)
                      +|.   |+++.|++++..+
T Consensus       261 a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          261 AFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EECCSTTTTTEEEEEECTT
T ss_pred             EEecccCCCCEEEEECCCC
Confidence            999   8988888777643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.38  E-value=0.06  Score=58.61  Aligned_cols=61  Identities=11%  Similarity=-0.080  Sum_probs=45.1

Q ss_pred             CCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccC
Q 004745          616 DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG  677 (732)
Q Consensus       616 ~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~  677 (732)
                      .+|.|..||+.||+.+.+..- ...+.+-...-.+.+++.++.|+.|+.+|.++++++..+.
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence            468999999999999887752 1222221223346677779999999999999999987664

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.33  E-value=0.099  Score=51.75  Aligned_cols=202  Identities=9%  Similarity=0.118  Sum_probs=116.8

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCC--CCC---EEEEEE-C--CCcEEEEEcCCCCCCCCC
Q 004745           31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET--SDE---LVVSGA-G--DAEVRLFNLSRFSGRGLD  102 (732)
Q Consensus        31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~--~g~---~l~s~~-~--dg~i~vwd~~~~~~~~~~  102 (732)
                      ..+++.....+-+.|+|+ +|+.+..+ ..  +.++.+..-|.-  .|+   ++++.. .  +++|.+|++......   
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~-~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---  112 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSY-NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---  112 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEE-CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEc-cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---
Confidence            356666677889999999 89999888 32  567777777631  011   233333 3  578999977422111   


Q ss_pred             CCCCCCceeec-------cccCceeEEEE--ecCCCc-EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004745          103 DNAITPSALYQ-------CHTRRVKKLAV--EVGNPH-VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus       103 ~~~~~~~~~~~-------~h~~~v~~l~~--~p~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                            +..+.       .-...+..+++  +|..+. +++....+|.+..|++.....-       .-....+..+.- 
T Consensus       113 ------l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g-------~~~~~lVR~f~l-  178 (355)
T 3amr_A          113 ------LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG-------YISGKKVRAFKM-  178 (355)
T ss_dssp             ------EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS-------CEEEEEEEEEEC-
T ss_pred             ------eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC-------cccceEEEEecC-
Confidence                  22221       11145666777  664443 6777888899999998542210       000011111111 


Q ss_pred             ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004745          173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  252 (732)
Q Consensus       173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (732)
                                 ...+..|...+. ...|+.+-.+..|..+|.+......        +..+..+.      .++-...+.
T Consensus       179 -----------gsq~EgcvvDd~-~g~Lyv~eEd~GIw~~da~p~~~~~--------~~~v~~~~------~g~l~aDvE  232 (355)
T 3amr_A          179 -----------NSQTEGMAADDE-YGRLYIAEEDEAIWKFSAEPDGGSN--------GTVIDRAD------GRHLTRDIE  232 (355)
T ss_dssp             -----------SSCEEEEEEETT-TTEEEEEETTTEEEEEECSTTSCSC--------CEEEEEBS------SSSBCSCEE
T ss_pred             -----------CCCcceEEEcCC-CCeEEEecccceEEEEeCCcCCCCC--------ceEEEEec------CCccccCcc
Confidence                       125778899887 5688888888777777754221000        00111110      111122377


Q ss_pred             EEEE--cCCCC-EEEEEec-CCeEEEEECCC
Q 004745          253 HVTF--SPNGE-EVLLSYS-GEHVYLMDVNH  279 (732)
Q Consensus       253 ~l~~--sp~g~-~l~~~~~-dg~v~iwd~~~  279 (732)
                      .|++  .++++ +|+++++ ++.+.+||...
T Consensus       233 GLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          233 GLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             eEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            7777  56666 7888885 77999999974

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.32  E-value=0.076  Score=54.80  Aligned_cols=192  Identities=13%  Similarity=0.068  Sum_probs=116.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceee
Q 004745           33 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY  112 (732)
Q Consensus        33 ~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  112 (732)
                      +|+.+. ...|+..++........+  .....+..++|++.. +.++.+-...+.|+.+++.......      ......
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~-~~lywsD~~~~~I~~~~~~g~~~~~------~~~~~~  154 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVI  154 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTT-TEEEEEETTTTEEEEEEC------C------CCEEEE
T ss_pred             eeEEec-cceeEEEccCCcceeEec--cccCcceEEeeeecc-CceEEEecCCCeEEEEEcccCCCCC------cceEEE
Confidence            444443 367999998876555444  345678899999874 3445554567889888886421000      011222


Q ss_pred             ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEe
Q 004745          113 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  192 (732)
Q Consensus       113 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  192 (732)
                      .........+++.+.+++++++-...+.|.+.++.....            ..+..             ........|++
T Consensus       155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~------------~~l~~-------------~~~~~P~~iav  209 (400)
T 3p5b_L          155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVV  209 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE------------EEEEE-------------CSSCCEEEEEE
T ss_pred             eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce------------EEEEe-------------CCCCCcceEEE
Confidence            223456788999886667777777788899988765431            11111             01124678999


Q ss_pred             cCCCCCEEEEEeC-CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CC
Q 004745          193 SSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE  270 (732)
Q Consensus       193 ~~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg  270 (732)
                      +|.++.++++-.. .+.|...++...... .+             .      ... -...+.|+++|++..|+.+.. .+
T Consensus       210 dp~~g~ly~td~~~~~~I~~~~~dG~~~~-~~-------------~------~~~-l~~P~glavd~~~~~lY~aD~~~~  268 (400)
T 3p5b_L          210 DPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL-------------V------TEN-IQWPNGITLDLLSGRLYWVDSKLH  268 (400)
T ss_dssp             ETTTTEEEEEECSSSCCEEEEETTSCSCE-EE-------------E------CSS-CSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ecccCeEEEEeCCCCCEEEEEeCCCCccE-EE-------------E------ECC-CCceEEEEEEeCCCEEEEEECCCC
Confidence            9975655555433 378888888753211 11             0      001 114788999998887877754 67


Q ss_pred             eEEEEECCCC
Q 004745          271 HVYLMDVNHA  280 (732)
Q Consensus       271 ~v~iwd~~~~  280 (732)
                      .|..+|+...
T Consensus       269 ~I~~~d~dG~  278 (400)
T 3p5b_L          269 SISSIDVNGG  278 (400)
T ss_dssp             EEEEEETTSC
T ss_pred             EEEEEeCCCC
Confidence            8999998763

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.26  E-value=0.053  Score=61.02  Aligned_cols=187  Identities=12%  Similarity=0.068  Sum_probs=114.3

Q ss_pred             CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCce
Q 004745           40 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV  119 (732)
Q Consensus        40 dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v  119 (732)
                      ...|+..++........+  .....+.+|+|++.. +.++++-...+.|+.+++.......      .....+.......
T Consensus       403 ~~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~~~-~~lY~sD~~~~~I~~~~l~g~~~~~------~~~~vi~~~l~~P  473 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQAP  473 (791)
T ss_dssp             BSSEEEECTTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEECSSCSCC
T ss_pred             ccceeEeeccCCcceeee--cCCCceEEEeecccC-CeeEEeeccceeEEEEeccCCCCCc------ceeEEEecCCCCc
Confidence            356888888766554444  344567899999864 3555565567889988887421100      1122223234567


Q ss_pred             eEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCE
Q 004745          120 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL  199 (732)
Q Consensus       120 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  199 (732)
                      ..|++.+.+++++++-...+.|.+.++.....            ..+..             ........|+++|.++.+
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~------------~~l~~-------------~~l~~P~gIaVDp~~g~L  528 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVVDPVHGFM  528 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSE------------EEEEE-------------CTTCCEEEEEEETTTTEE
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCeE------------EEEEe-------------CCCCCcceEEEecCCCCE
Confidence            78999887767887877888999999865431            11111             011246789999985555


Q ss_pred             EEEEeCC-CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEEC
Q 004745          200 LLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDV  277 (732)
Q Consensus       200 l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~  277 (732)
                      +++-... +.|...++...... .+             .      ... -...+.|++++.+..|+.+.. .+.|..+++
T Consensus       529 YwtD~g~~~~I~~~~~dG~~~~-~l-------------v------~~~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          529 YWTDWGTPAKIKKGGLNGVDIY-SL-------------V------TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDV  587 (791)
T ss_dssp             EEEECSSSCEEEEEETTSCCEE-EE-------------E------CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEecCCCCCeEEEEecCCCceE-EE-------------E------eCC-CCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence            5554333 77888888753221 11             0      001 114788999988777777754 578999998


Q ss_pred             CCCC
Q 004745          278 NHAG  281 (732)
Q Consensus       278 ~~~~  281 (732)
                      ....
T Consensus       588 dG~~  591 (791)
T 3m0c_C          588 NGGN  591 (791)
T ss_dssp             TSCS
T ss_pred             CCCc
Confidence            7643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.22  E-value=0.039  Score=54.90  Aligned_cols=184  Identities=7%  Similarity=0.033  Sum_probs=111.0

Q ss_pred             CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCce
Q 004745           40 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV  119 (732)
Q Consensus        40 dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v  119 (732)
                      ...|+..++........+.......+.+++|++.. +.++.+-...+.|..+++......         ...+.......
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~-~~lyw~D~~~~~I~r~~~~g~~~~---------~~~~~~~l~~p   81 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH-GLIYWSDVSEEAIKRTEFNKTESV---------QNVVVSGLLSP   81 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGG-TEEEEEETTTTEEEEEETTSSSCC---------CEEEEECCSCC
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCC-CEEEEEECCCCcEEEEEccCCCce---------EEEEcCCCCCc
Confidence            46799999887631111111223456799999864 355555556788999988753211         11222223456


Q ss_pred             eEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCE
Q 004745          120 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL  199 (732)
Q Consensus       120 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  199 (732)
                      ..+++.+.+++++++-...+.|.++++.....            ..+..             ........++++|.++.+
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~-------------~~~~~P~giavdp~~g~l  136 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR------------KVLFW-------------QELDQPRAIALDPSSGFM  136 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-------------SSCSSEEEEEEEGGGTEE
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE------------EEEEe-------------CCCCCccEEEEeCCCCEE
Confidence            78999876767777777778899999865331            11110             111245789999875544


Q ss_pred             EEEEe-CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEEC
Q 004745          200 LLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDV  277 (732)
Q Consensus       200 l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~  277 (732)
                      +++-. ..+.|...++..... ..+             ..     . . -...+.|+++|++..|+.+.. .+.|..+|+
T Consensus       137 y~td~~~~~~I~r~~~dG~~~-~~~-------------~~-----~-~-l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          137 YWTDWGEVPKIERAGMDGSSR-FII-------------IN-----S-E-IYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             EEEECSSSCEEEEEETTSCSC-EEE-------------EC-----S-S-CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEecCCCCEEEEEEcCCCCe-EEE-------------EE-----C-C-CCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence            55442 357888888764321 111             00     0 0 113688999997777777654 689999998


Q ss_pred             CC
Q 004745          278 NH  279 (732)
Q Consensus       278 ~~  279 (732)
                      ..
T Consensus       196 dG  197 (318)
T 3sov_A          196 DG  197 (318)
T ss_dssp             TS
T ss_pred             CC
Confidence            75

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.20  E-value=0.0013  Score=73.58  Aligned_cols=205  Identities=7%  Similarity=-0.036  Sum_probs=115.1

Q ss_pred             CceeEEEEcCCCCEEEEE-eCCCcEEEEeCCC----CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004745           20 GCVNAISWNSKGSLLISG-SDDTHINVWSYSS----RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS   94 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg-~~dg~i~vWd~~~----~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~   94 (732)
                      ..+..++|.+.+..|..+ ...+.|+.+++..    ......+ .........|++.+.. +.++++-...+.|.+.++.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-~~~~~~P~glavD~~~-g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-CSCC--CCCEECCCSS-SBCEECCTTTSCEEEEBSS
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-eCCCCCcceEEEEeeC-CcEEEEeccCCeEEEEecC
Confidence            456688999866655554 4567899999875    2222112 1222345678888653 4555655567889999987


Q ss_pred             CCCCCCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004745           95 RFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                      ...           +..+ .........|++.|.++.++++-... +.|.+.++......            .+..    
T Consensus       484 g~~-----------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~------------~l~~----  536 (699)
T 1n7d_A          484 GVK-----------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY------------SLVT----  536 (699)
T ss_dssp             SCC-----------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC------------EESC----
T ss_pred             CCc-----------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee------------EEEe----
Confidence            421           1222 11234567889988665666554332 66777766432210            0000    


Q ss_pred             ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004745          173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  252 (732)
Q Consensus       173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (732)
                               ........|+|+|+++.++++-+..+.|..+|+..... ..+.             ..    .+... ...
T Consensus       537 ---------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~-------------~~----~~~~~-~P~  588 (699)
T 1n7d_A          537 ---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTIL-------------ED----EKRLA-HPF  588 (699)
T ss_dssp             ---------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEEC-------------CC----SSSCS-SCC
T ss_pred             ---------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEE-------------ec----CCcCC-Cce
Confidence                     01124567899998677777777788999999874321 1110             00    00000 123


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCCCCC
Q 004745          253 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  282 (732)
Q Consensus       253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~  282 (732)
                      .|++..+ .++++....+.|..++..+++.
T Consensus       589 glavd~~-~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          589 SLAVFED-KVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             CCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred             EeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence            4555544 3444445578999999877543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.03  E-value=0.2  Score=54.88  Aligned_cols=207  Identities=9%  Similarity=0.018  Sum_probs=127.0

Q ss_pred             CceeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           20 GCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        20 ~~V~~l~~s~dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      ..+..++|++.+..|. +-..++.|+.+++........+ .........+++.+.. ++++++-...+.|.+.++.... 
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~-  113 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-EFGLDYPEGMAVDWLG-KNLYWADTGTNRIEVSKLDGQH-  113 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSTT-
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-eCCCCCcceEEEEeCC-CEEEEEECCCCEEEEEecCCCc-
Confidence            4567899998665555 4456788999998755443333 2223457789998764 4555665667889999987422 


Q ss_pred             CCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEE-eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004745           99 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  176 (732)
Q Consensus        99 ~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (732)
                                ...+ ...-.....|++.|..+.++++- +..+.|...++.....            ..+..        
T Consensus       114 ----------~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------------~~l~~--------  163 (628)
T 4a0p_A          114 ----------RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------------TTLVP--------  163 (628)
T ss_dssp             ----------CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC--------
T ss_pred             ----------EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------------EEEEC--------
Confidence                      1222 23345678999999665666654 2356777777754431            11110        


Q ss_pred             ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004745          177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  256 (732)
Q Consensus       177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  256 (732)
                            .......+++++++++++++-...+.|..+|+..... ..+.                   . ... ....+++
T Consensus       164 ------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~-------------------~-~l~-~P~glav  215 (628)
T 4a0p_A          164 ------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA-------------------D-DLP-HPFGLTQ  215 (628)
T ss_dssp             ------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-------------------E-CCS-CEEEEEE
T ss_pred             ------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee-------------------c-cCC-CceEEEE
Confidence                  1225688999998555555656678999999875422 1110                   0 001 2456777


Q ss_pred             cCCCCEEEEEecCCeEEEEECCCCCCcceeee
Q 004745          257 SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT  288 (732)
Q Consensus       257 sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~  288 (732)
                      .. +...++-...+.|...|..+++....+..
T Consensus       216 ~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~  246 (628)
T 4a0p_A          216 YQ-DYIYWTDWSRRSIERANKTSGQNRTIIQG  246 (628)
T ss_dssp             ET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             EC-CEEEEecCCCCEEEEEECCCCCceEEEec
Confidence            65 34444444578999999888766555443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.89  E-value=0.13  Score=56.40  Aligned_cols=208  Identities=9%  Similarity=0.061  Sum_probs=120.5

Q ss_pred             CCceeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004745           19 QGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS   97 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~-~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~   97 (732)
                      -....+++|++.+..|..+. ..+.|..+++........+....-.....+++.+.+ ++++++-...+.|.+.++....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~-~~ly~~d~~~~~I~v~~~dG~~  117 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSL  117 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC-CEEEEEeCCCCEEEEEECCCCC
Confidence            34577899998666555444 567888898875532222213333568899999864 3555665667899999987432


Q ss_pred             CCCCCCCCCCCceeec-cccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004745           98 GRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  175 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (732)
                                 ...+. ........|++.|.++.++++-- ..+.|...++.....            ..+..       
T Consensus       118 -----------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~------------~~l~~-------  167 (619)
T 3s94_A          118 -----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN-------  167 (619)
T ss_dssp             -----------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC-------
T ss_pred             -----------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce------------EEEEe-------
Confidence                       12222 33456788999997666666642 245666666643321            11110       


Q ss_pred             cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEE
Q 004745          176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  255 (732)
Q Consensus       176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  255 (732)
                            ........+++++++++++++-...+.|..+|+.........                    .+... ....|+
T Consensus       168 ------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~--------------------~~~~~-~P~gi~  220 (619)
T 3s94_A          168 ------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV--------------------KGSLP-HPFALT  220 (619)
T ss_dssp             ------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------------------------CCCEE
T ss_pred             ------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE--------------------eCCCC-CceEEE
Confidence                  012256889999985655566566788999988753211100                    00000 123567


Q ss_pred             EcCCCCEEEEE-ecCCeEEEEECCCCCCccee
Q 004745          256 FSPNGEEVLLS-YSGEHVYLMDVNHAGGRAMR  286 (732)
Q Consensus       256 ~sp~g~~l~~~-~~dg~v~iwd~~~~~~~~~~  286 (732)
                      +..+  .|+.+ ...+.|...|..+++....+
T Consensus       221 ~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          221 LFED--ILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             ESSS--EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             EeCC--EEEEecCCCCEEEEEECCCCcccEEE
Confidence            7655  45554 45789999999887654443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.80  E-value=0.054  Score=58.86  Aligned_cols=26  Identities=12%  Similarity=-0.017  Sum_probs=21.1

Q ss_pred             CCCEEEEEecCCeEEEEECCCCCCcc
Q 004745          259 NGEEVLLSYSGEHVYLMDVNHAGGRA  284 (732)
Q Consensus       259 ~g~~l~~~~~dg~v~iwd~~~~~~~~  284 (732)
                      .+..++.++.||.|+.||.++++..-
T Consensus       474 ~gg~v~~g~~dg~l~a~D~~tG~~lw  499 (571)
T 2ad6_A          474 KGGLVWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCEEE
Confidence            45678889999999999999976543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.77  E-value=0.11  Score=54.23  Aligned_cols=213  Identities=11%  Similarity=0.014  Sum_probs=115.3

Q ss_pred             ceeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC---Cc-EEEEEcC
Q 004745           21 CVNAISWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AE-VRLFNLS   94 (732)
Q Consensus        21 ~V~~l~~s~d--g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---g~-i~vwd~~   94 (732)
                      .-..++|+|+  +..|..+...+.|+.+|+.+++.....  .......+++|+++  |+++++....   .. +...+..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~d--G~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLN--GDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTT--CCEEEEECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCC--CCEEEEcCCCCcccceEEEEECC
Confidence            4568999985  334444443388999999887765443  34456899999999  4655554321   11 2222222


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                      .  . .      .....+. .......+++.|.++.++++-..++.|+.+|..++...           ..+....    
T Consensus       216 ~--~-~------~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-----------~~~~~~~----  270 (433)
T 4hw6_A          216 S--G-F------TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-----------EEEVMMD----  270 (433)
T ss_dssp             G--T-T------CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-----------EEEEECS----
T ss_pred             C--C-e------ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-----------EEEeccC----
Confidence            1  1 0      0001111 23456778899855577766667788999998755410           0111100    


Q ss_pred             ccccCCCCCccceEEEEecCCCCC-EEEEEeCCCeEEEEECCCCC-CCc---ccccCCCCCCccccccccccccCCCccc
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRRMLP-PLT---SCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~-~l~tg~~dg~v~iwd~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                              ....-..++|+|+ ++ ++++-...+.|+.++..... .+.   .+......    ..+.... .....-. 
T Consensus       271 --------~~~~~~~ia~dpd-G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~----~g~~dg~-~~~a~~~-  335 (433)
T 4hw6_A          271 --------TKGSNFHIVWHPT-GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSS----PGWVDGM-GTGARLW-  335 (433)
T ss_dssp             --------CCSSCEEEEECTT-SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTC----CCCBCEE-GGGSBCS-
T ss_pred             --------CCCCcccEEEeCC-CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCC----CccCCCc-ccceEEc-
Confidence                    0112246999999 56 55555667899998876321 110   00000000    0000000 0000011 


Q ss_pred             cEEEEEE---------cCCCCEEEEEecCCeEEEEEC
Q 004745          250 HLTHVTF---------SPNGEEVLLSYSGEHVYLMDV  277 (732)
Q Consensus       250 ~i~~l~~---------sp~g~~l~~~~~dg~v~iwd~  277 (732)
                      ....+++         .++|.+.++-...+.|+.++.
T Consensus       336 ~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          336 GPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             SEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             CCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            3677999         777776666666788998874

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.76  E-value=0.39  Score=52.65  Aligned_cols=191  Identities=7%  Similarity=-0.007  Sum_probs=118.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceee
Q 004745           33 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY  112 (732)
Q Consensus        33 ~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  112 (732)
                      +|+-+ ....|+..++.+......+....-..+.+++|++.. +.++.+-..++.|..+++.....          ....
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~-~~lywtD~~~~~I~r~~~~g~~~----------~~v~   75 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTD-NRIYWTDISLKTISRAFMNGSAL----------EHVV   75 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC----------EEEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCC-CEEEEEECCCCeEEEEECCCCCc----------EEEE
Confidence            34433 346799999987654443322334568899999975 45555556678899998874221          1112


Q ss_pred             ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEe
Q 004745          113 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  192 (732)
Q Consensus       113 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  192 (732)
                      .........|++.+.+++++++-...+.|.+.++.....            ..+..             ........|++
T Consensus        76 ~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~------------~~l~~-------------~~l~~P~~iav  130 (628)
T 4a0p_A           76 EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR------------QVLVW-------------KDLDSPRALAL  130 (628)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC------------EEEEC-------------SSCCCEEEEEE
T ss_pred             eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE------------EEEEe-------------CCCCCcccEEE
Confidence            222245778999876767777777778899999865431            11110             01124579999


Q ss_pred             cCCCCCEEEEE-eCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CC
Q 004745          193 SSTRPHLLLVG-GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE  270 (732)
Q Consensus       193 ~~~~~~~l~tg-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg  270 (732)
                      +|..+.++++- +..+.|...++...... .+             .      .  .....+.|+++++++.|+.+.. .+
T Consensus       131 dp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l-------------~------~--~~~~P~GlalD~~~~~LY~aD~~~~  188 (628)
T 4a0p_A          131 DPAEGFMYWTEWGGKPKIDRAAMDGSERT-TL-------------V------P--NVGRANGLTIDYAKRRLYWTDLDTN  188 (628)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSCSCE-EE-------------E------C--SCSSEEEEEEETTTTEEEEEETTTT
T ss_pred             ccCCCeEEEeCCCCCCEEEEEeCCCCceE-EE-------------E------C--CCCCcceEEEccccCEEEEEECCCC
Confidence            99756555554 22567888887643211 11             0      0  0114788999998877777755 67


Q ss_pred             eEEEEECCCCCC
Q 004745          271 HVYLMDVNHAGG  282 (732)
Q Consensus       271 ~v~iwd~~~~~~  282 (732)
                      .|..+++.....
T Consensus       189 ~I~~~d~dG~~~  200 (628)
T 4a0p_A          189 LIESSNMLGLNR  200 (628)
T ss_dssp             EEEEEETTSCSC
T ss_pred             EEEEEcCCCCce
Confidence            999999976443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.70  E-value=1.2  Score=52.53  Aligned_cols=77  Identities=18%  Similarity=0.150  Sum_probs=53.4

Q ss_pred             CCceeEEEEcCC------CCEEEEEeC-CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004745           19 QGCVNAISWNSK------GSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF   91 (732)
Q Consensus        19 ~~~V~~l~~s~d------g~~lasg~~-dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw   91 (732)
                      ...|.|+++.|.      ++++|.|.. |++|+|+++.+.+.+....-+......++.+..-+...+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            568999999863      369999996 9999999999877665442222233444444322113688999999998777


Q ss_pred             EcCC
Q 004745           92 NLSR   95 (732)
Q Consensus        92 d~~~   95 (732)
                      .+..
T Consensus       633 ~~d~  636 (1158)
T 3ei3_A          633 GLNI  636 (1158)
T ss_dssp             EECT
T ss_pred             EEcC
Confidence            7654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.64  E-value=0.039  Score=61.40  Aligned_cols=73  Identities=12%  Similarity=0.213  Sum_probs=49.1

Q ss_pred             ceeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeeEEEEccCCCc-CeEEEEEecCCCCCEEEEEE-CC-----CcEEEEE
Q 004745           21 CVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDELVVSGA-GD-----AEVRLFN   92 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~~-dg~i~vWd~~~~~~~~~~~~~h~~-~V~~~~~s~~~~g~~l~s~~-~d-----g~i~vwd   92 (732)
                      ...++++..++++++.|+. +..+.+||..+.+....- ..+.. .-.++...++  |++++.|+ .+     ..+.+||
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~d--g~iyv~GG~~~~~~~~~~~e~yd  320 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSD--GRVFTIGGSWSGGVFEKNGEVYS  320 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTT--SCEEEECCCCCSSSCCCCEEEEE
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC-CCCccccccceEEecC--CeEEEEeCcccCCcccccceEeC
Confidence            3445778899999999984 568999999887654322 11222 2234555666  48888888 34     5689999


Q ss_pred             cCCC
Q 004745           93 LSRF   96 (732)
Q Consensus        93 ~~~~   96 (732)
                      +.+.
T Consensus       321 ~~t~  324 (656)
T 1k3i_A          321 PSSK  324 (656)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            8764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.62  E-value=0.076  Score=57.80  Aligned_cols=71  Identities=11%  Similarity=0.090  Sum_probs=47.9

Q ss_pred             EEEEcCCCCEEEEEeC--------------------C----CcEEEEeCCCCeeEEEEccC-CC--------cCeEEEEE
Q 004745           24 AISWNSKGSLLISGSD--------------------D----THINVWSYSSRKLLHSIETG-HS--------ANVFCTKF   70 (732)
Q Consensus        24 ~l~~s~dg~~lasg~~--------------------d----g~i~vWd~~~~~~~~~~~~~-h~--------~~V~~~~~   70 (732)
                      .+++.|+..++..+..                    |    +.|.-+|..+|+.+..+... |.        .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4677777777776653                    2    58999999999999887433 32        1221 222


Q ss_pred             e-cCCCC---CEEEEEECCCcEEEEEcCCCC
Q 004745           71 V-PETSD---ELVVSGAGDAEVRLFNLSRFS   97 (732)
Q Consensus        71 s-~~~~g---~~l~s~~~dg~i~vwd~~~~~   97 (732)
                      . .+  |   ..++.++.+|.++++|..+++
T Consensus       329 ~~~~--G~~~~~v~~~~~~G~l~~lD~~tG~  357 (582)
T 1flg_A          329 KAKD--GKIVKATAHADRNGFFYVVDRSNGK  357 (582)
T ss_dssp             ECSS--SCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ecCC--CCEEEEEEEECCCceEEEEECCCCC
Confidence            1 23  4   378888999999999988753

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.60  E-value=0.14  Score=50.28  Aligned_cols=166  Identities=10%  Similarity=0.047  Sum_probs=100.9

Q ss_pred             CCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccC----CC--cCeEEEEE---ecCCCCCEEEEEE-----
Q 004745           19 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETG----HS--ANVFCTKF---VPETSDELVVSGA-----   83 (732)
Q Consensus        19 ~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~----h~--~~V~~~~~---s~~~~g~~l~s~~-----   83 (732)
                      .----+++|.+... ++++.-..++|..||...+........+    ..  ..+..|.|   .|+  +.++++..     
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~--grL~vv~~~~~af   89 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS--KRLFAVMKNAKSF   89 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC--CEEEEEEEETTTT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC--CcEEEEEcccccc
Confidence            33345788987544 4454447899999999866433332122    11  13589999   577  46666543     


Q ss_pred             --------CCCcEEEEEcC---CCCCCCCCCCCCCCceeeccc-----------cCceeEEEEecCCCcEEEEEeCC-Cc
Q 004745           84 --------GDAEVRLFNLS---RFSGRGLDDNAITPSALYQCH-----------TRRVKKLAVEVGNPHVVWSASED-GT  140 (732)
Q Consensus        84 --------~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~h-----------~~~v~~l~~~p~~~~~l~s~s~d-g~  140 (732)
                              .+..|..+|+.   ++....        ...+...           ......++..+++ +..++++.. +.
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~--------~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~  160 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVW--------SVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPA  160 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSE--------EEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCE
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEE--------EecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCe
Confidence                    15779999998   532211        1111111           1348899999955 777788877 77


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004745          141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  216 (732)
Q Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~  216 (732)
                      |...+.....             ...|.+...       ........+.|++.|+ +++|++....|.|.-+|++.
T Consensus       161 I~rV~pdG~~-------------~~~~~~~~~-------~~~~~~G~nGIv~~pd-g~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          161 IARVSADGKT-------------VSTFAWESG-------NGGQRPGYSGITFDPH-SNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEECTTSCC-------------EEEEEECCC-------CSSSCCSCSEEEEETT-TTEEEEESSSSSEEEEECSS
T ss_pred             EEEEeCCCCE-------------EeeeeecCC-------CcccccCcceEEEeCC-CCEEEEEcCCCeEEEEcCCC
Confidence            6666654332             112221111       0112235678999999 67777776699999999883

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.51  E-value=0.16  Score=57.41  Aligned_cols=117  Identities=15%  Similarity=0.101  Sum_probs=67.0

Q ss_pred             eEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEE
Q 004745           23 NAISWNSKGSLLISGSDD-----THINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFN   92 (732)
Q Consensus        23 ~~l~~s~dg~~lasg~~d-----g~i~vWd~~~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd   92 (732)
                      ..++|+|||+.|+....|     ..|+++++.+++.  ...+..........+.|+|+  |++|+..+.   ...|.++|
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~l~~~d  301 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD--TNTLCIGSQSPETAEVHLLD  301 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT--SSEEEEEEECSSCEEEEEEE
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCC--CCEEEEEecCCCCceEEEEE
Confidence            468899999988877654     3688888887642  22231233345678899999  477765542   34577888


Q ss_pred             cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC--C--cEEEEECCC
Q 004745           93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED--G--TLRQHDFRQ  148 (732)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d--g--~i~vwd~~~  148 (732)
                      +.++....      ..............++.|+. ++.+++....+  +  .|..+|+.+
T Consensus       302 ~~~~~~~~------~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          302 LRKGNAHN------TLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             SSSCTTCC------CEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCCCCCCc------eeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            87642111      00111222334555666554 54555555443  2  566666654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.49  E-value=0.1  Score=56.82  Aligned_cols=26  Identities=12%  Similarity=0.017  Sum_probs=21.4

Q ss_pred             CCCEEEEEecCCeEEEEECCCCCCcc
Q 004745          259 NGEEVLLSYSGEHVYLMDVNHAGGRA  284 (732)
Q Consensus       259 ~g~~l~~~~~dg~v~iwd~~~~~~~~  284 (732)
                      .+..++.++.||.++.||.++++..-
T Consensus       496 agglvf~g~~dg~l~A~D~~tG~~lW  521 (582)
T 1flg_A          496 AGNLVFTGTGDGYFKAFDAKSGKELW  521 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCCEEE
Confidence            35678889999999999999976543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.47  E-value=0.074  Score=55.48  Aligned_cols=157  Identities=7%  Similarity=0.028  Sum_probs=95.9

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-CC----cEEEEEcC
Q 004745           21 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA----EVRLFNLS   94 (732)
Q Consensus        21 ~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg----~i~vwd~~   94 (732)
                      ....|+++| ++..|..+...+.|+.+|+.+++.....  ........++|+++  |++|+.+.. ++    .+.+.+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~~--G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTHE--ADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECTT--SSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeCC--CCEEEEEeCCCCcccceEEEEeCC
Confidence            457899998 3555555554488999998877655444  34456889999998  475555543 22    23333332


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                      . ..        .....+. .......++++|+++.++++-..++.|..++...+...            .+....    
T Consensus       214 g-~~--------~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~------------~~~~~~----  267 (430)
T 3tc9_A          214 S-GF--------KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT------------PLFTIQ----  267 (430)
T ss_dssp             G-TS--------CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE------------EEEECS----
T ss_pred             C-ce--------eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE------------EEEEcC----
Confidence            1 11        1012222 23446788899966677777777788999998754310            111100    


Q ss_pred             ccccCCCCCccceEEEEecCCCCC-EEEEEeCCCeEEEEECCC
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRRM  216 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~-~l~tg~~dg~v~iwd~~~  216 (732)
                              .......++|+|+ ++ ++++-...+.|..++...
T Consensus       268 --------~~~~P~gia~~pd-G~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          268 --------DSGWEFHIQFHPS-GNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             --------SSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEET
T ss_pred             --------CCCcceeEEEcCC-CCEEEEEECCCCEEEEEeCCc
Confidence                    0124578999999 66 555556678899988753

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.46  E-value=0.071  Score=52.28  Aligned_cols=178  Identities=7%  Similarity=0.036  Sum_probs=104.7

Q ss_pred             CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecc----c--cCceeEEEE---ecCCCcEE
Q 004745           62 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----H--TRRVKKLAV---EVGNPHVV  132 (732)
Q Consensus        62 ~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----h--~~~v~~l~~---~p~~~~~l  132 (732)
                      ..--.+++|++.. +.++++.-..++|..||.......        .+ .+.+    .  ...+..|.|   .|+ ++++
T Consensus        12 ~~yPE~~~wd~~~-g~~~vs~l~~g~V~~~~~~~~~~~--------~~-~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~   80 (334)
T 2p9w_A           12 NLTPEDTIYDRTR-QVFYQSNLYKGRIEVYNPKTQSHF--------NV-VIDGASSNGDGEQQMSGLSLLTHDNS-KRLF   80 (334)
T ss_dssp             TCCCSCEEEETTT-TEEEEEETTTTEEEEECTTTCCEE--------EE-CCTTTCCSSCCSEEEEEEEESSSSSC-CEEE
T ss_pred             ccCCcCccCcCCC-CEEEEEeccCCEEEEEcCCCCeEE--------EE-ecCCccccCCCcceeeEEEEeccCCC-CcEE
Confidence            3345688999864 455555558999999998742111        01 1211    0  114578999   575 4676


Q ss_pred             EEEe-------------CCCcEEEEECC---CCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC
Q 004745          133 WSAS-------------EDGTLRQHDFR---QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  196 (732)
Q Consensus       133 ~s~s-------------~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  196 (732)
                      ++..             .+..|..+|+.   +++..            ...++..-.................++..++ 
T Consensus        81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~------------~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~-  147 (334)
T 2p9w_A           81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPV------------WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD-  147 (334)
T ss_dssp             EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCS------------EEEESHHHHHHHHHHHSSCCEEEEEEEECTT-
T ss_pred             EEEcccccccccccccCCCCEEEEEcCCcCCCCCEE------------EEecCccccccccccccccccCCceeEECCC-
Confidence            6433             25779999998   55532            1122210000000000001235789999998 


Q ss_pred             CCEEEEEeCC-CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEE
Q 004745          197 PHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM  275 (732)
Q Consensus       197 ~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iw  275 (732)
                      |+..++++.. +.|...+.... .+..+....+               ........+.++++|+|+.|++....|.+..+
T Consensus       148 GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~---------------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~f  211 (334)
T 2p9w_A          148 GNSYVAFALGMPAIARVSADGK-TVSTFAWESG---------------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAF  211 (334)
T ss_dssp             SCEEEEEEESSCEEEEECTTSC-CEEEEEECCC---------------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEE
T ss_pred             CCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCC---------------CcccccCcceEEEeCCCCEEEEEcCCCeEEEE
Confidence            8889988888 88877777643 2221110000               01111136789999999999998779999999


Q ss_pred             ECCC
Q 004745          276 DVNH  279 (732)
Q Consensus       276 d~~~  279 (732)
                      |+.+
T Consensus       212 D~~~  215 (334)
T 2p9w_A          212 DVSK  215 (334)
T ss_dssp             ECSS
T ss_pred             cCCC
Confidence            9985

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.30  E-value=0.29  Score=50.95  Aligned_cols=240  Identities=7%  Similarity=0.023  Sum_probs=116.0

Q ss_pred             eeeccCCceeEEEEcCCCCEEEEEeCC---Cc-EEEEeCCCCee-EEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745           14 ELEGHQGCVNAISWNSKGSLLISGSDD---TH-INVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus        14 ~l~~h~~~V~~l~~s~dg~~lasg~~d---g~-i~vWd~~~~~~-~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      .+.+.......++|+++|+++++....   .. +...+...+.. ...+  ........++++|.. |.++++-..++.|
T Consensus       176 ~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~--~~~~~P~giavd~~~-G~lyv~d~~~~~V  252 (433)
T 4hw6_A          176 IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL--CNARGAKTCAVHPQN-GKIYYTRYHHAMI  252 (433)
T ss_dssp             EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE--EECSSBCCCEECTTT-CCEEECBTTCSEE
T ss_pred             EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc--cccCCCCEEEEeCCC-CeEEEEECCCCEE
Confidence            333344568899999999955554321   12 33333222111 0111  122345678899943 5666666677889


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      +.+|..++...       ..+... +....-..++|+|++..++++-...+.|+.+++.......       .....+..
T Consensus       253 ~~~d~~~g~~~-------~~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~-------~~~~~~ag  317 (433)
T 4hw6_A          253 SSYDPATGTLT-------EEEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL-------AVPYIVCG  317 (433)
T ss_dssp             EEECTTTCCEE-------EEEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB-------CCCEEEEE
T ss_pred             EEEECCCCeEE-------EEEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc-------CcEEEEEe
Confidence            99988743210       001111 1122234699999764466666677889998875321100       00001111


Q ss_pred             c-c-CCccccccCCCCCccceEEEEe---------cCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccc
Q 004745          169 L-R-CGAKRSLADPPKQTLSLKSCDI---------SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  237 (732)
Q Consensus       169 ~-~-~~~~~~~~~~~~~~~~v~~i~~---------~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  237 (732)
                      . . .+...-. .....-.....+++         .++ ++++++-..++.|+.++.. +. +..+.....  .+...+.
T Consensus       318 ~~g~~g~~dg~-~~~a~~~~P~giav~~n~~y~~dd~~-g~lyvaD~~n~~I~~~~~~-G~-v~t~~G~g~--~~~~G~~  391 (433)
T 4hw6_A          318 QHSSPGWVDGM-GTGARLWGPNQGIFVKNEAYAGEEDE-YDFYFCDRDSHTVRVLTPE-GR-VTTYAGRGN--SREWGYV  391 (433)
T ss_dssp             CTTCCCCBCEE-GGGSBCSSEEEEEEEECGGGTTSSCC-EEEEEEETTTTEEEEECTT-SE-EEEEECCCT--TCSSCCB
T ss_pred             cCCCCccCCCc-ccceEEcCCccEEEEccccccccCCC-CcEEEEECCCCEEEEECCC-CC-EEEEEeCCC--CCccccC
Confidence            0 0 0000000 00001113567888         555 6677776777889999853 32 221111100  0000000


Q ss_pred             ccccccCCCccccEEEEEEc-CCCCEEEEEecCCeEEEEECC
Q 004745          238 PMHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       238 ~~~~~~~~~~~~~i~~l~~s-p~g~~l~~~~~dg~v~iwd~~  278 (732)
                      .........-. ....|+++ ++|.++++=...+.|+.++++
T Consensus       392 dG~~~~~~~~~-~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          392 DGELRSQALFN-HPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CEETTTTCBCS-SEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCccccccEeC-CCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            00000000111 36789999 566655555567888888764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.24  E-value=0.59  Score=46.49  Aligned_cols=198  Identities=11%  Similarity=0.075  Sum_probs=104.0

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE-EEcCCCC
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL-FNLSRFS   97 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v-wd~~~~~   97 (732)
                      ...+..+.+.++++.++.+ .++.|..- ...++.-..+..++...+..+.+.|+  +.+++.+ .+|.+.. +|-.   
T Consensus       121 ~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~--~~~~~~g-~~G~~~~S~d~g---  192 (327)
T 2xbg_A          121 PGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPS--GEYVAVS-SRGSFYSTWEPG---  192 (327)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTT--SCEEEEE-TTSSEEEEECTT---
T ss_pred             CCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCC--CcEEEEE-CCCcEEEEeCCC---
Confidence            3457788887777766665 45554321 22343333332456678899999997  4666655 4454433 3321   


Q ss_pred             CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004745           98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  177 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (732)
                      +..     ...+  -......+..+.+.+++ .++ .++.+|.+++.+...++.               |.       .+
T Consensus       193 G~t-----W~~~--~~~~~~~~~~~~~~~~g-~~~-~~~~~G~~~~s~~D~G~t---------------W~-------~~  241 (327)
T 2xbg_A          193 QTA-----WEPH--NRTTSRRLHNMGFTPDG-RLW-MIVNGGKIAFSDPDNSEN---------------WG-------EL  241 (327)
T ss_dssp             CSS-----CEEE--ECCSSSCEEEEEECTTS-CEE-EEETTTEEEEEETTEEEE---------------EC-------CC
T ss_pred             CCc-----eeEC--CCCCCCccceeEECCCC-CEE-EEeCCceEEEecCCCCCe---------------eE-------ec
Confidence            111     1111  12345678889988854 554 455678777764221210               00       00


Q ss_pred             cCC-CCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004745          178 ADP-PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  256 (732)
Q Consensus       178 ~~~-~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  256 (732)
                      ... ......+.++.+.++ +.+++++ .++.| .+..+.++.-..+...                 ..... .+.++.|
T Consensus       242 ~~~~~~~~~~~~~v~~~~~-~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~-----------------~~~~~-~~~~v~~  300 (327)
T 2xbg_A          242 LSPLRRNSVGFLDLAYRTP-NEVWLAG-GAGAL-LCSQDGGQTWQQDVDV-----------------KKVPS-NFYKILF  300 (327)
T ss_dssp             BCTTSSCCSCEEEEEESSS-SCEEEEE-STTCE-EEESSTTSSCEECGGG-----------------TTSSS-CCCEEEE
T ss_pred             cCCcccCCcceEEEEecCC-CEEEEEe-CCCeE-EEeCCCCcccEEcCcc-----------------CCCCC-CeEEEEE
Confidence            000 011225788889876 5566555 46766 4444444322111000                 00111 3677888


Q ss_pred             cCCCCEEEEEecCCeEEEEEC
Q 004745          257 SPNGEEVLLSYSGEHVYLMDV  277 (732)
Q Consensus       257 sp~g~~l~~~~~dg~v~iwd~  277 (732)
                      .+++ .+++++.+|.|.-++-
T Consensus       301 ~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          301 FSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             EETT-EEEEECSTTEEEEECC
T ss_pred             ECCC-ceEEEcCCceEEEEcC
Confidence            7555 4777788898877654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.21  E-value=0.16  Score=55.15  Aligned_cols=25  Identities=12%  Similarity=0.023  Sum_probs=21.1

Q ss_pred             CCCEEEEEecCCeEEEEECCCCCCc
Q 004745          259 NGEEVLLSYSGEHVYLMDVNHAGGR  283 (732)
Q Consensus       259 ~g~~l~~~~~dg~v~iwd~~~~~~~  283 (732)
                      .+..++.++.||.|+.||.++++..
T Consensus       483 agg~vf~gt~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCCEE
Confidence            4667888999999999999997644

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.17  E-value=0.047  Score=56.97  Aligned_cols=158  Identities=9%  Similarity=0.047  Sum_probs=92.6

Q ss_pred             CeEEEEEec-CCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC---
Q 004745           64 NVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---  139 (732)
Q Consensus        64 ~V~~~~~s~-~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg---  139 (732)
                      ....++++| +.  ..|+.+...+.|+.+|+....           +..+.........|+|++++..++++...++   
T Consensus       138 ~P~~lavdp~~~--g~Lyv~d~~~~I~~id~~~~~-----------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~  204 (430)
T 3tc9_A          138 GAVWLSFDPKNH--NHLYLVGEQHPTRLIDFEKEY-----------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDR  204 (430)
T ss_dssp             CCCEEEEETTEE--EEEEEEEBTEEEEEEETTTTE-----------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTS
T ss_pred             CCCEEEECCCCC--CeEEEEeCCCcEEEEECCCCE-----------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCccc
Confidence            457899997 33  456555555888899987522           3333334566889999996633555544322   


Q ss_pred             -cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          140 -TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       140 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                       .+.+.+. .+....         ...+.           .    ......++++|+++.++++-..++.|+.++.....
T Consensus       205 ~~v~~~~~-~g~~~~---------~~~l~-----------~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~  259 (430)
T 3tc9_A          205 PNNYILTR-ESGFKV---------ITELT-----------K----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE  259 (430)
T ss_dssp             EEEEEEEG-GGTSCS---------EEEEE-----------E----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred             ceEEEEeC-CCceee---------eeeec-----------c----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence             2333332 222100         00000           0    11345778999547777777778899999987543


Q ss_pred             CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe-cCCeEEEEECCC
Q 004745          219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH  279 (732)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-~dg~v~iwd~~~  279 (732)
                      .....                .   .+. ......++|+|+|++|+.+. ..+.|+.++...
T Consensus       260 ~~~~~----------------~---~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          260 TTPLF----------------T---IQD-SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEEE----------------E---CSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEEE----------------E---cCC-CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            10000                0   001 11367899999999666654 578999988764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.08  E-value=1  Score=42.69  Aligned_cols=167  Identities=10%  Similarity=0.091  Sum_probs=99.9

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee---EEEEc-----cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004745           20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---LHSIE-----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLF   91 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~---~~~~~-----~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw   91 (732)
                      ...-.|++.+++.++++.-.++.+.++++.....   +....     .........++|+|..  +.|+++.......||
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~--~~L~va~E~~p~~i~  147 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD--HTFWFFKEKNPIEVY  147 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT--TEEEEEEESSSEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCC--CEEEEEECcCCceEE
Confidence            4566788888888777665678899998765432   22221     1233456899999984  566666666566666


Q ss_pred             EcCCCCCCCCCCCCCCCceee-------ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004745           92 NLSRFSGRGLDDNAITPSALY-------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      .+......       ..+..+       ..+...+.+++++|..+++++.....+.|.++|.....             .
T Consensus       148 ~~~g~~~~-------~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~-------------~  207 (255)
T 3qqz_A          148 KVNGLLSS-------NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV-------------I  207 (255)
T ss_dssp             EEESTTCS-------SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-------------E
T ss_pred             EEcccccC-------CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE-------------E
Confidence            66410000       001111       11234578999999887888888888889999975431             1


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEEC
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  214 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~  214 (732)
                      ..+.+..+...    ....-..-..|+|.++ |+++++ +..+.++.+..
T Consensus       208 ~~~~L~~g~~~----l~~~~~qpEGia~d~~-G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          208 GEMSLTKGSRG----LSHNIKQAEGVAMDAS-GNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEEECSTTGGG----CSSCCCSEEEEEECTT-CCEEEE-ETTTEEEEEEC
T ss_pred             EEEEcCCccCC----cccccCCCCeeEECCC-CCEEEE-cCCceEEEEEe
Confidence            22233222100    0111125678999998 665555 66667776654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.98  E-value=1  Score=49.20  Aligned_cols=200  Identities=7%  Similarity=-0.014  Sum_probs=116.3

Q ss_pred             CceeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004745           20 GCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG   98 (732)
Q Consensus        20 ~~V~~l~~s~dg~~l-asg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~   98 (732)
                      ..+.+++|.+.+..| ++-...+.|+.+++........+ ...-.....+++.+.+ ++++++-+..+.|.+.++.... 
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~~~~~~p~GlAvD~~~-~~lY~tD~~~~~I~v~~~~G~~-  425 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-TAQIAHPDGIAVDWVA-RNLYWTDTGTDRIEVTRLNGTM-  425 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-ECCCCCcCceEEeccc-CcEEEEeCCCCcEEEEeCCCCe-
Confidence            346788998854444 44445788999988754433333 3333567799998754 4566665667889999987431 


Q ss_pred             CCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004745           99 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  176 (732)
Q Consensus        99 ~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (732)
                                ...+ ...-....+|++.|..+.++++-. ..+.|...++.....            ..+.         
T Consensus       426 ----------~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~------------~~l~---------  474 (619)
T 3s94_A          426 ----------RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR------------VVLV---------  474 (619)
T ss_dssp             ----------CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEE---------
T ss_pred             ----------EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc------------EEEE---------
Confidence                      1222 223456889999997656666542 235666666643221            1111         


Q ss_pred             ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004745          177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  256 (732)
Q Consensus       177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  256 (732)
                          .........++++++++++.++=+..+.|..+++..... ..+             ....   ..|    ..+|++
T Consensus       475 ----~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~-~~~-------------~~~~---l~~----P~glav  529 (619)
T 3s94_A          475 ----NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR-RVL-------------VEDK---IPH----IFGFTL  529 (619)
T ss_dssp             ----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEE-------------EECC---CCS----SCCEEE
T ss_pred             ----eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce-EEE-------------eccC---CCC----cEEEEE
Confidence                011225678999987555555555667899999864321 111             0000   111    224555


Q ss_pred             cCCCCEEEEEec-CCeEEEEECCCC
Q 004745          257 SPNGEEVLLSYS-GEHVYLMDVNHA  280 (732)
Q Consensus       257 sp~g~~l~~~~~-dg~v~iwd~~~~  280 (732)
                      ..+  +|+.+.. .+.|...|..++
T Consensus       530 ~~~--~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          530 LGD--YVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             ETT--EEEEECTTSSCEEEEESSSC
T ss_pred             ECC--EEEEeecCCCeEEEEEcCCC
Confidence            433  5555544 677888888876

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.75  E-value=1.2  Score=44.64  Aligned_cols=203  Identities=10%  Similarity=0.087  Sum_probs=108.6

Q ss_pred             CceeEEEEcCCCCEEEEEe------------CCCcEEEEeCCC--CeeE-EEEccC-----CCcCeEEEEEecCCCCC-E
Q 004745           20 GCVNAISWNSKGSLLISGS------------DDTHINVWSYSS--RKLL-HSIETG-----HSANVFCTKFVPETSDE-L   78 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~------------~dg~i~vWd~~~--~~~~-~~~~~~-----h~~~V~~~~~s~~~~g~-~   78 (732)
                      ...-.+...|+|..+++++            .+|.|.++|+.+  ++.. ..+ .+     .......+.+.++.+|. +
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~-~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI-IGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEE-ECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEc-cCCCCCcCceeeeeeEEEECCCCcEE
Confidence            3455777888886555542            689999999873  2221 122 22     23467888887742233 4


Q ss_pred             EEEEE-C--CCcEEEEEcCCCCCCCCCCCCCCCceeeccc-cCceeEEEEecCCCcEEEEEe---CC-------------
Q 004745           79 VVSGA-G--DAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSAS---ED-------------  138 (732)
Q Consensus        79 l~s~~-~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s---~d-------------  138 (732)
                      |+.+. .  +.+|.+|++.......      ..+..+.+. -...+.+.+.+++ .+.++..   .|             
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~------~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~  201 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSL------LHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLA  201 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEE------EEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEE------EEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCC
Confidence            54443 2  5678898887532211      123333322 2457889998854 6655543   11             


Q ss_pred             -CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004745          139 -GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  217 (732)
Q Consensus       139 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~  217 (732)
                       |.|..+|.  ++ +           ..+.              ..-..-+.++|+|++..++++-+..+.|+.|++...
T Consensus       202 ~g~vyr~d~--~~-~-----------~~~~--------------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~  253 (355)
T 3sre_A          202 WSFVTYYSP--ND-V-----------RVVA--------------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  253 (355)
T ss_dssp             CEEEEEECT--TC-C-----------EEEE--------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             ccEEEEEEC--Ce-E-----------EEee--------------cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC
Confidence             22333332  11 0           0000              011245889999994344455556789999998742


Q ss_pred             CCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCEEEEEecC-CeEEEEEC
Q 004745          218 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSG-EHVYLMDV  277 (732)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~d-g~v~iwd~  277 (732)
                      ..+...          +.+   ..      ....-.+++.+ +|++.+++..+ +.|..|+.
T Consensus       254 g~l~~~----------~~~---~~------~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          254 WTLTPL----------RVL---SF------DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             SCEEEE----------EEE---EC------SSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             CcEecC----------EEE---eC------CCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence            211110          111   00      11367789999 59876656533 34444443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.63  E-value=0.047  Score=60.93  Aligned_cols=164  Identities=9%  Similarity=0.021  Sum_probs=95.3

Q ss_pred             eeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-CcEEEEEcCCCCCC
Q 004745           22 VNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSGR   99 (732)
Q Consensus        22 V~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-g~i~vwd~~~~~~~   99 (732)
                      ...|++.+. ++++++-...+.|.+.++........+ .........|+++|.. +.++++-... +.|.+.++....  
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~--  530 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-REQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVD--  530 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-CCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCC--
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE-eCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCC--
Confidence            456788754 445555456788999997755433333 3333456788999874 3444443233 677777765321  


Q ss_pred             CCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004745          100 GLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  178 (732)
Q Consensus       100 ~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (732)
                               ...+ .......+.|+|+|+++.++++-+..+.|..+++.....            ..+...         
T Consensus       531 ---------~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~------------~~~~~~---------  580 (699)
T 1n7d_A          531 ---------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTILED---------  580 (699)
T ss_dssp             ---------CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC------------EEECCC---------
T ss_pred             ---------eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce------------EEEEec---------
Confidence                     1111 112345678999997778887777788899999864321            111110         


Q ss_pred             CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccc
Q 004745          179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  223 (732)
Q Consensus       179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~  223 (732)
                        ........+|++..  ..++++....+.|..+|..+++.+..+
T Consensus       581 --~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          581 --EKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             --SSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             --CCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCCceEEe
Confidence              00011223444544  346666667789999998776654444

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.47  E-value=0.95  Score=45.84  Aligned_cols=166  Identities=14%  Similarity=0.106  Sum_probs=96.8

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCC---CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCC
Q 004745           27 WNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH---SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  103 (732)
Q Consensus        27 ~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h---~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~  103 (732)
                      .+.+|..|+.+- ++.||.-++......+.+...+   -..|..+..+|+  |.+|+..+ +..|.|-.+..+.......
T Consensus        28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSps--G~lLAl~g-~~~V~Vv~LP~~~~~~~~~  103 (452)
T 3pbp_A           28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTS--GDLLCLFN-DNEIFVMEVPWGYSNVEDV  103 (452)
T ss_dssp             EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTT--SSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred             EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCC--CCEEEEec-CCeEEEEEecCccccCccc
Confidence            345677677664 4778887877544333332222   236888999999  58888775 6789999988432111000


Q ss_pred             C--CCCCceeecc------ccCceeEEEEecCCC--cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745          104 N--AITPSALYQC------HTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus       104 ~--~~~~~~~~~~------h~~~v~~l~~~p~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                      .  .....+.+.-      ....|..+.|+|-+.  ..|++-..|+.|++||+......+.           .++...+ 
T Consensus       104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-----------~L~k~~~-  171 (452)
T 3pbp_A          104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-----------VLNKPNN-  171 (452)
T ss_dssp             HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-----------EESCCCS-
T ss_pred             ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-----------chhcccc-
Confidence            0  0000112211      246799999999643  4888999999999999987332110           1111100 


Q ss_pred             cccccCCCCCccceEEEEecCCCCCEEEEEe--CCCeEEEE
Q 004745          174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLY  212 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~--~dg~v~iw  212 (732)
                        .+ ........|.+++|.++ +-.|...+  .+|.|+-.
T Consensus       172 --~f-g~d~~~~ev~S~~Fg~~-~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          172 --SF-GLDARVNDITDLEFSKD-GLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             --EE-ESCSSCCCEEEEEECTT-SSCEEEEECTTSCEEEEE
T ss_pred             --cc-CCCcccceEEEEEEcCC-CcEEEEEecCCCCCEEEE
Confidence              01 11223357889999986 55555544  66666544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.41  E-value=1  Score=47.20  Aligned_cols=175  Identities=13%  Similarity=0.123  Sum_probs=96.8

Q ss_pred             ceeEEEEcCC-C-CEEEEEeCCCcEEEEeCCCCeeEEEEccC--CCcCeEEEEE-------ecCCCCCEEEEEECCC-c-
Q 004745           21 CVNAISWNSK-G-SLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKF-------VPETSDELVVSGAGDA-E-   87 (732)
Q Consensus        21 ~V~~l~~s~d-g-~~lasg~~dg~i~vWd~~~~~~~~~~~~~--h~~~V~~~~~-------s~~~~g~~l~s~~~dg-~-   87 (732)
                      ....|+|+|. + +++++-...+.|++.|+.++........+  .......++|       +++  |+.|+.+...+ . 
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~--G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADE--AEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCT--TCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCC--CCEEEEEeCCCCCc
Confidence            3568999983 4 44444444567999998887766544211  1235799999       998  46555555443 2 


Q ss_pred             -----EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC-------CCCCCCCC
Q 004745           88 -----VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR-------QGSSCPPA  155 (732)
Q Consensus        88 -----i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~-------~~~~~~~~  155 (732)
                           |.+.+... .+.....   .....+.. ......++++|+++.++++-..++.|..+|+.       ++..-...
T Consensus       218 ~~~~~V~~i~r~~-~G~~~~~---~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          218 DESPSVYIIKRNA-DGTFDDR---SDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             GGEEEEEEEECCT-TSCCSTT---SCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             ccCceEEEEecCC-CCceeec---ccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence                 55555322 1111000   00012221 23456788999777888888888899999987       44420000


Q ss_pred             CCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCE-EEEEeCCCeEEEEECC
Q 004745          156 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL-LLVGGSDAFARLYDRR  215 (732)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-l~tg~~dg~v~iwd~~  215 (732)
                      ..........++..            ......+.|+|+|+ ++. +++-.....|+.+|..
T Consensus       293 ~~~~~g~~~~l~~~------------~~~~~p~~ia~~p~-G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          293 VKNNPNTFKQLFTI------------ADPSWEFQIFIHPT-GKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             GGGCTTTEEEEEEC------------SSSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEE
T ss_pred             ccccccccceeEec------------CCCCCceEEEEcCC-CCEEEEEeCCCCEEEEEecC
Confidence            00000000011111            01124578999999 664 5555667889887654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.38  E-value=2.6  Score=42.29  Aligned_cols=108  Identities=9%  Similarity=0.048  Sum_probs=60.1

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee--EEEEc--cCCCcCeEEEEEecC---CCCCEEEEEECC-----C
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIE--TGHSANVFCTKFVPE---TSDELVVSGAGD-----A   86 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~--~~~~~--~~h~~~V~~~~~s~~---~~g~~l~s~~~d-----g   86 (732)
                      -..-..++|.|+|+++++ ..++.|++++  +++.  +..+.  .........|+|+|+   . +.++++-...     +
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~-g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQE-PYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEECTTSSEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCC-CEEEEEEecCCCCCcc
Confidence            345678999999996665 5669999998  4432  22221  122456799999997   3 2444444432     5


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCC-ceeec---cccCceeEEEEecCCCcEEEEEe
Q 004745           87 EVRLFNLSRFSGRGLDDNAITP-SALYQ---CHTRRVKKLAVEVGNPHVVWSAS  136 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~-~~~~~---~h~~~v~~l~~~p~~~~~l~s~s  136 (732)
                      .|..++.......     ..+. +..+.   +.......|+|.|++ .++++.+
T Consensus       106 ~v~r~~~~~~~~~-----~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G  153 (352)
T 2ism_A          106 QVVRLRHLGERGV-----LDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTG  153 (352)
T ss_dssp             EEEEEEECSSCEE-----EEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECC
T ss_pred             EEEEEEeCCCCcC-----ceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEEC
Confidence            6777776531100     0000 11122   111234689999966 6666543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.81  E-value=0.63  Score=47.10  Aligned_cols=123  Identities=14%  Similarity=0.123  Sum_probs=79.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe------------eEEEEccC-----CCcCeEEEEEecCCC-CCEEEEE
Q 004745           21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK------------LLHSIETG-----HSANVFCTKFVPETS-DELVVSG   82 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~------------~~~~~~~~-----h~~~V~~~~~s~~~~-g~~l~s~   82 (732)
                      .|..+..||+|++||..+. ..|.|-.+..+.            ..+.+.-+     ...+|..+.|+|-+. |..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            6888999999999998865 579988876321            11222111     256799999999642 4589999


Q ss_pred             ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe--CCCcEEEEE
Q 004745           83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHD  145 (732)
Q Consensus        83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s--~dg~i~vwd  145 (732)
                      ..|+.|++||+......+...++......+......|.+++|.+ ++-.|...+  +.|-|+-..
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEES
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEEC
Confidence            99999999999963322210000001112222336788999988 445555544  677776554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.62  E-value=3.1  Score=41.13  Aligned_cols=160  Identities=12%  Similarity=0.106  Sum_probs=86.3

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      ++...+..+++.+++.+++.+...+..+-+|- .++.-..+.......+..+.+.++  +.. +.++.+|.+++.+... 
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~--g~~-~~~~~~G~~~~s~~D~-  234 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPD--GRL-WMIVNGGKIAFSDPDN-  234 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTT--SCE-EEEETTTEEEEEETTE-
T ss_pred             CCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCCCCCCccceeEECCC--CCE-EEEeCCceEEEecCCC-
Confidence            44567889999999988877654433444442 122211222345677899999887  354 4556788887764221 


Q ss_pred             CCCCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004745           97 SGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  175 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (732)
                       +...     ..+..- ..+...+.++.+.+ ++.+++.+ .+|.| .+....++.-               .       
T Consensus       235 -G~tW-----~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g-~~g~i-~~S~DgG~tW---------------~-------  283 (327)
T 2xbg_A          235 -SENW-----GELLSPLRRNSVGFLDLAYRT-PNEVWLAG-GAGAL-LCSQDGGQTW---------------Q-------  283 (327)
T ss_dssp             -EEEE-----CCCBCTTSSCCSCEEEEEESS-SSCEEEEE-STTCE-EEESSTTSSC---------------E-------
T ss_pred             -CCee-----EeccCCcccCCcceEEEEecC-CCEEEEEe-CCCeE-EEeCCCCccc---------------E-------
Confidence             1100     001100 01223578888887 43666554 46766 4444444311               0       


Q ss_pred             cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEEC
Q 004745          176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  214 (732)
Q Consensus       176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~  214 (732)
                      .+.........+.++.|.++  ..+++++.+|.|.-++-
T Consensus       284 ~~~~~~~~~~~~~~v~~~~~--~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          284 QDVDVKKVPSNFYKILFFSP--DQGFILGQKGILLRYVT  320 (327)
T ss_dssp             ECGGGTTSSSCCCEEEEEET--TEEEEECSTTEEEEECC
T ss_pred             EcCccCCCCCCeEEEEEECC--CceEEEcCCceEEEEcC
Confidence            01100011224567777644  35777778898877764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.40  E-value=0.47  Score=49.74  Aligned_cols=175  Identities=11%  Similarity=0.067  Sum_probs=92.0

Q ss_pred             eEEEEEecC-CCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecc----ccCceeEEEE-------ecCCCcEE
Q 004745           65 VFCTKFVPE-TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----HTRRVKKLAV-------EVGNPHVV  132 (732)
Q Consensus        65 V~~~~~s~~-~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~-------~p~~~~~l  132 (732)
                      ...|+|+|. . ++++++-...+.|++.|+....           +..+..    .......|+|       ++++..++
T Consensus       141 p~~la~dp~~~-~~Lyv~~~~~~~i~~ID~~~~~-----------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~ly  208 (496)
T 3kya_A          141 NGRLAFDPLNK-DHLYICYDGHKAIQLIDLKNRM-----------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMI  208 (496)
T ss_dssp             EEEEEEETTEE-EEEEEEEETEEEEEEEETTTTE-----------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEE
T ss_pred             CCEEEEccCCC-CEEEEEECCCCeEEEEECCCCE-----------EEEEEccCccccCCCcEEEEeecccccCCCCCEEE
Confidence            468999983 3 3455554445678888887532           233221    1235899999       99664355


Q ss_pred             EEEeCCCc------EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC
Q 004745          133 WSASEDGT------LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD  206 (732)
Q Consensus       133 ~s~s~dg~------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d  206 (732)
                      ++-..++.      |.+.+........    .... ...+-.               ......++++|+++.++++-..+
T Consensus       209 vad~~~~~~~~~~~V~~i~r~~~G~~~----~~~~-~~~v~~---------------~~~p~giavdp~~g~LYvtd~~~  268 (496)
T 3kya_A          209 VAIDYDGKGDESPSVYIIKRNADGTFD----DRSD-IQLIAA---------------YKQCNGATIHPINGELYFNSYEK  268 (496)
T ss_dssp             EEECCCTTGGGEEEEEEEECCTTSCCS----TTSC-EEEEEE---------------ESCCCCEEECTTTCCEEEEETTT
T ss_pred             EEeCCCCCcccCceEEEEecCCCCcee----eccc-ceeecc---------------CCCceEEEEcCCCCeEEEEECCC
Confidence            44443322      5566532211100    0000 000100               01335678899767778888888


Q ss_pred             CeEEEEECC-------CCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe-cCCeEEEEECC
Q 004745          207 AFARLYDRR-------MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVN  278 (732)
Q Consensus       207 g~v~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-~dg~v~iwd~~  278 (732)
                      +.|..+|+.       ++..-.... ..... -...+     ...+. ......++|+|+|++|+.+. ....|+.++..
T Consensus       269 g~V~r~d~~~~~~~~~tg~~~tp~~-~~~~g-~~~~l-----~~~~~-~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          269 GQVFRLDLVDYFKTIKNGGSWDPIV-KNNPN-TFKQL-----FTIAD-PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TEEEEECHHHHHHHHHTTCCCCCBG-GGCTT-TEEEE-----EECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CEEEEEecccccccccCceeecccc-ccccc-cccee-----EecCC-CCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            999999987       443200000 00000 00000     00111 11357899999999766664 46788887765


Q ss_pred             C
Q 004745          279 H  279 (732)
Q Consensus       279 ~  279 (732)
                      .
T Consensus       341 g  341 (496)
T 3kya_A          341 E  341 (496)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.89  E-value=3  Score=41.63  Aligned_cols=163  Identities=11%  Similarity=0.129  Sum_probs=87.2

Q ss_pred             CeEEEEEecCCCCCEEEEE------------ECCCcEEEEEcCCCCCCCCCCCCCCCcee----eccccCceeEEEEecC
Q 004745           64 NVFCTKFVPETSDELVVSG------------AGDAEVRLFNLSRFSGRGLDDNAITPSAL----YQCHTRRVKKLAVEVG  127 (732)
Q Consensus        64 ~V~~~~~s~~~~g~~l~s~------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~l~~~p~  127 (732)
                      ....+...|+  |..++++            ..+|.|.++|+.+...+.      ..+..    +.........|.+.++
T Consensus        51 G~EDi~~~~~--G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~------~~l~~~g~~~~~~~f~PhGi~~~~d  122 (355)
T 3sre_A           51 GSEDLEILPN--GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV------SELEIIGNTLDISSFNPHGISTFID  122 (355)
T ss_dssp             CCCEEEECTT--SEEEEEECCC-----------CCEEEEEETTSSSCCE------EECEEECSSCCGGGCCEEEEEEEEC
T ss_pred             CcceeEEcCC--CeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce------EEEEccCCCCCcCceeeeeeEEEEC
Confidence            3456777776  4444444            168999999998533221      11111    1112346677777663


Q ss_pred             --CC-cEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEE
Q 004745          128 --NP-HVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV  202 (732)
Q Consensus       128 --~~-~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t  202 (732)
                        +. .++++-..  +..|.+|++......           ..+.....+         ..-...+.+.+.++ |.++++
T Consensus       123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~-----------~~~~~~~~g---------~~~~~pND~~v~~~-G~fyvt  181 (355)
T 3sre_A          123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-----------LLHLKTIRH---------KLLPSVNDIVAVGP-EHFYAT  181 (355)
T ss_dssp             TTCCEEEEEEECSTTCCEEEEEEEETTTTE-----------EEEEEEECC---------TTCSSEEEEEEEET-TEEEEE
T ss_pred             CCCcEEEEEEECCCCCCeEEEEEEECCCCE-----------EEEEecccc---------CCCCCCceEEEeCC-CCEEec
Confidence              32 24444333  457778877654310           111111001         11225788889988 666666


Q ss_pred             EeC-----------------CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEE
Q 004745          203 GGS-----------------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  265 (732)
Q Consensus       203 g~~-----------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~  265 (732)
                      ...                 .|.|.-+|...   ...+.                   .+-  ...+.++|+||++.|+.
T Consensus       182 ~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~---~~~~~-------------------~~l--~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          182 NDHYFIDPYLKSWEMHLGLAWSFVTYYSPND---VRVVA-------------------EGF--DFANGINISPDGKYVYI  237 (355)
T ss_dssp             ESCSCSSHHHHHHHHHTTCCCEEEEEECTTC---CEEEE-------------------EEE--SSEEEEEECTTSSEEEE
T ss_pred             CCcEeCCcccccchhhccCCccEEEEEECCe---EEEee-------------------cCC--cccCcceECCCCCEEEE
Confidence            431                 23444444421   11000                   000  13688999999998887


Q ss_pred             Eec-CCeEEEEECCC
Q 004745          266 SYS-GEHVYLMDVNH  279 (732)
Q Consensus       266 ~~~-dg~v~iwd~~~  279 (732)
                      +.. .+.|+.|++..
T Consensus       238 adt~~~~I~~~~~~~  252 (355)
T 3sre_A          238 AELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEGGGTEEEEEEECT
T ss_pred             EeCCCCeEEEEEECC
Confidence            754 78999999875

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.85  E-value=1.8  Score=42.27  Aligned_cols=64  Identities=11%  Similarity=0.173  Sum_probs=35.2

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC-----cEEEEEcCCC
Q 004745           30 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-----EVRLFNLSRF   96 (732)
Q Consensus        30 dg~~lasg~~d-----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg-----~i~vwd~~~~   96 (732)
                      ++.+++.|+.+     ..+.+||+.+.+....-.......-.++... +  +.+++.|+.++     .+.+||+.+.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~  134 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-N--GLLYAVGGFDGSTGLSSVEAYNIKSN  134 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEEEEECSSCEEEEEEEEETTTT
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-C--CEEEEEcCCCCCccCceEEEEeCCCC
Confidence            56677777644     3588899887764432211111111222222 3  36777777653     4778887754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.48  E-value=2.5  Score=41.12  Aligned_cols=107  Identities=13%  Similarity=0.131  Sum_probs=52.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCe---eEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-----CcEEEEEcCCC
Q 004745           30 KGSLLISGSDD-----THINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRF   96 (732)
Q Consensus        30 dg~~lasg~~d-----g~i~vWd~~~~~---~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-----g~i~vwd~~~~   96 (732)
                      ++.+++.|+.+     ..+.+||+.+.+   ....-.......-.++... +  +.+++.|+.+     ..+.+||+.+.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-G--DMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-T--TEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-C--CEEEEEcccCCCcccceEEEEcCCCC
Confidence            56677777754     468999988765   3322111111111122222 3  3677777654     35788888754


Q ss_pred             CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCC
Q 004745           97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS  150 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~  150 (732)
                      .-..        +..+......- ++...  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       139 ~W~~--------~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          139 QWSM--------LGDMQTAREGA-GLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH  186 (301)
T ss_dssp             EEEE--------EEECSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             eEEE--------CCCCCCCcccc-eEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc
Confidence            3211        11111111111 12222  44677777654     347777776543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.36  E-value=7.8  Score=39.41  Aligned_cols=209  Identities=11%  Similarity=0.141  Sum_probs=123.2

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCC
Q 004745           25 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  104 (732)
Q Consensus        25 l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~  104 (732)
                      .-.+|..+.||-=. ..++.|+|+++.+.++.+ . ....|.-=.|-.+   +.|+-.+ +..|..|++....       
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~-~-~~e~VvfWkWis~---~~l~lVT-~taVyHWsi~~~s-------  136 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-T-MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGES-------  136 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE-E-CSSCCCEEEEEET---TEEEEEC-SSEEEEEESSSSC-------
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcce-e-cCCCceEEEecCC---CeEEEEc-CCeeEEecccCCC-------
Confidence            44677777777654 578999999999998887 2 3456777778766   4665554 5789999997421       


Q ss_pred             CCCCceeecccc----CceeEEEEecCCCcEEE-EEe------CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745          105 AITPSALYQCHT----RRVKKLAVEVGNPHVVW-SAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus       105 ~~~~~~~~~~h~----~~v~~l~~~p~~~~~l~-s~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                        .|++.+.-|.    ..|.....+++. ++++ +|-      -.|.+.+|..+.....                     
T Consensus       137 --~P~kvFdR~~~L~~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ---------------------  192 (494)
T 1bpo_A          137 --QPVKMFDRHSSLAGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------------------  192 (494)
T ss_dssp             --CCEEEEECCGGGTTCEEEEEEECTTS-SEEEEEEEEEETTEEEEEEEEEESTTCCEE---------------------
T ss_pred             --CchhheecchhcccceEEEEEECCCC-CeEEEEeecccCCcccceEEEeeccccccc---------------------
Confidence              3455555443    457777777755 5444 332      2367888887765411                     


Q ss_pred             cccccCCCCCccceEEEEecCC--CCCEEEEEeC---CCeEEEEECCCC-CCCcccccCCCCCCccccccccccccCCCc
Q 004745          174 KRSLADPPKQTLSLKSCDISST--RPHLLLVGGS---DAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~--~~~~l~tg~~---dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                           ...+|......+.+..+  ...+++-+..   .+.++|.++... .....+..     ..+..+.|    +....
T Consensus       193 -----~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k-----k~vdv~fp----pe~~~  258 (494)
T 1bpo_A          193 -----PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK-----KAVDVFFP----PEAQN  258 (494)
T ss_dssp             -----EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC-----EEEECCCC----TTSTT
T ss_pred             -----hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc-----eeeeeeCC----ccccc
Confidence                 11223322222222211  0123333333   378999998643 11111110     01111111    12233


Q ss_pred             cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCccee
Q 004745          248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR  286 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~  286 (732)
                      +. ..++..++.-..++.-+.-|.|++||+.++.....-
T Consensus       259 DF-Pvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n  296 (494)
T 1bpo_A          259 DF-PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (494)
T ss_dssp             CC-EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             Cc-eeEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence            43 557899998889999999999999999997654433

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.22  E-value=4.1  Score=39.65  Aligned_cols=64  Identities=8%  Similarity=0.176  Sum_probs=36.7

Q ss_pred             CCCEEEEEeCC----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC------CcEEEEEcCCC
Q 004745           30 KGSLLISGSDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRF   96 (732)
Q Consensus        30 dg~~lasg~~d----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d------g~i~vwd~~~~   96 (732)
                      ++.+++.|+.+    ..+.++|+.+.+....-.......-.++... +  +.+++.|+.+      ..+.+||+.+.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~d~~~~  128 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-E--GKIYTSGGSEVGNSALYLFECYDTRTE  128 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-T--TEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-C--CEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence            56677777754    5788999988764432211111111122222 3  3677777765      45888898864

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.97  E-value=7.2  Score=35.60  Aligned_cols=139  Identities=13%  Similarity=-0.003  Sum_probs=72.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCe------eEEEEccCC--CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCC
Q 004745           31 GSLLISGSDDTHINVWSYSSRK------LLHSIETGH--SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  102 (732)
Q Consensus        31 g~~lasg~~dg~i~vWd~~~~~------~~~~~~~~h--~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~  102 (732)
                      ...|.+...| +|+.=....+.      ...++  +.  =..+..++|+|+  |.+.+.  .+|.+.-.+..+...    
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i--G~~gw~~~~~laf~P~--G~LYaV--~~G~Ly~~~~~t~~~----   72 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI--GKGGWSNFKFLFLSPG--GELYGV--LNDKIYKGTPPTHDN----   72 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE--ESSSCTTCSEEEECTT--SCEEEE--ETTEEEEESCCCSTT----
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhcccc--CccccccceeEEECCC--ccEEEE--eCCeEEEECCCCCCc----
Confidence            3456666666 66655444433      22233  22  246789999997  465555  677655544432111    


Q ss_pred             CCCCCCceeeccccCc--------eeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745          103 DNAITPSALYQCHTRR--------VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus       103 ~~~~~~~~~~~~h~~~--------v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                             ..+.+-...        -.++.|.|++ .+.++  .||.|.-++-.+....             -|--. +. 
T Consensus        73 -------~~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~-------------~Wl~~-a~-  127 (236)
T 1tl2_A           73 -------DNWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTD-------------NWIAR-AT-  127 (236)
T ss_dssp             -------CCHHHHCEEEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTC-------------CHHHH-SE-
T ss_pred             -------ccccccccEecccccccceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCC-------------ceecc-cc-
Confidence                   111111222        3788899855 66655  5698887774332210             00000 00 


Q ss_pred             ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEE
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  211 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~i  211 (732)
                       .+  ....-..+..+.|.|+ |.+.++.  |+.++-
T Consensus       128 -~v--g~~gw~~~~~lff~p~-G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          128 -EV--GSGGWSGFKFLFFHPN-GYLYAVH--GQQFYK  158 (236)
T ss_dssp             -EE--ECSSGGGEEEEEECTT-SCEEEEE--TTEEEE
T ss_pred             -Ee--ccCCCCceEEEEECCC-ceEEEEe--CCcEEe
Confidence             00  0011136789999999 7666555  777543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.24  E-value=12  Score=36.54  Aligned_cols=68  Identities=12%  Similarity=0.124  Sum_probs=35.9

Q ss_pred             EEcCCCCEEEEEeC----C-------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC--------C
Q 004745           26 SWNSKGSLLISGSD----D-------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--------A   86 (732)
Q Consensus        26 ~~s~dg~~lasg~~----d-------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d--------g   86 (732)
                      +...++.+++.|+.    +       ..+.+||+.+.+....-.......-.++... +  +.+++.|+.+        .
T Consensus        41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~  117 (315)
T 4asc_A           41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-L--NSIYVVGGREIKDGERCLD  117 (315)
T ss_dssp             EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-T--TEEEEECCEESSTTCCBCC
T ss_pred             EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-C--CEEEEEeCCcCCCCCcccc
Confidence            33457788888873    1       1277889888764322100111111122222 3  3667777632        4


Q ss_pred             cEEEEEcCCC
Q 004745           87 EVRLFNLSRF   96 (732)
Q Consensus        87 ~i~vwd~~~~   96 (732)
                      .+.+||+.+.
T Consensus       118 ~~~~~d~~~~  127 (315)
T 4asc_A          118 SVMCYDRLSF  127 (315)
T ss_dssp             CEEEEETTTT
T ss_pred             eEEEECCCCC
Confidence            5888888764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.13  E-value=6.4  Score=39.35  Aligned_cols=72  Identities=14%  Similarity=0.188  Sum_probs=43.3

Q ss_pred             CceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEE------ccCCCcCeEEEEEecC---CCCCEEEEEEC-----
Q 004745           20 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSI------ETGHSANVFCTKFVPE---TSDELVVSGAG-----   84 (732)
Q Consensus        20 ~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~------~~~h~~~V~~~~~s~~---~~g~~l~s~~~-----   84 (732)
                      ..-..|+|.|+|+ +++ +...|.|++++.. ++....+      ..........|+|+|+   . +.+.++-..     
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQS-RRIWLSYSEVGDDG   94 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHH-CEEEEEEEEECSSS
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCC-CEEEEEEeCCCCCC
Confidence            4567999999999 555 4567999999853 3321111      0122345789999995   2 344444333     


Q ss_pred             --CCcEEEEEcC
Q 004745           85 --DAEVRLFNLS   94 (732)
Q Consensus        85 --dg~i~vwd~~   94 (732)
                        ...|..|++.
T Consensus        95 ~~~~~v~r~~~~  106 (353)
T 2g8s_A           95 KAGTAVGYGRLS  106 (353)
T ss_dssp             CEEEEEEEEEEC
T ss_pred             CceeEEEEEEEC
Confidence              2346566654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=90.75  E-value=7  Score=40.64  Aligned_cols=68  Identities=9%  Similarity=-0.003  Sum_probs=37.9

Q ss_pred             CCEEEEecCCCcEEEEEcCc-cc-EE---EEEecCcccEEEEeecCCCC-eEEEecCCCcEE------EEcCCCCCCccc
Q 004745          608 GDYIASGSDDGRWFIWEKQT-GR-LI---KMLLGDEAVVNCVQCHPFDC-VVATSGIDNTIK------IWTPSASVPSIV  675 (732)
Q Consensus       608 g~~lasgs~Dg~i~iWd~~t-g~-~~---~~l~gH~~~V~~v~fsp~~~-~l~S~s~D~~i~------vW~~~~~~~~~~  675 (732)
                      |++++..-..+.|....++. |. ..   ..+..-..+++.|++.|||. ++++.+..|.|.      +|.+.....+..
T Consensus       369 g~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~~~R~~dv~~gpDG~~Lyv~~d~~G~i~~~~~~~~~~~~~~~~i~~  448 (454)
T 1cru_A          369 NTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQKDDGSVTNTLENPGSLIK  448 (454)
T ss_dssp             TEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEECTTSCEECCCSSTTCEEE
T ss_pred             CcEEEeecCCCEEEEEEECCCCCeeeeeeeeecccCCCceeEEECCCCCEEEEEECCCCCCccCCCceeEeccCCCceEE
Confidence            44444444445555555442 22 11   22222236999999999997 666666556543      676655544443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=90.67  E-value=7.3  Score=38.49  Aligned_cols=158  Identities=9%  Similarity=0.100  Sum_probs=86.5

Q ss_pred             CEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC---CCc---E-EEEEeC--CCcEEEEECC
Q 004745           77 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPH---V-VWSASE--DGTLRQHDFR  147 (732)
Q Consensus        77 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~---~-l~s~s~--dg~i~vwd~~  147 (732)
                      .+++.....+-+.+||+..           +.++.+..  ..++.+..-|.   ++.   + +++.-.  +++|.+|++.
T Consensus        41 s~ii~t~k~~gL~Vydl~G-----------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD  107 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSLDG-----------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID  107 (355)
T ss_dssp             CEEEEEETTTEEEEEETTS-----------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred             cEEEEEcCCCCEEEEcCCC-----------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence            4677777888999999952           22455542  56777777661   111   2 333333  5789999774


Q ss_pred             CCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEe--cCCCCC-EEEEEeCCCeEEEEECCCCCCCcccc
Q 004745          148 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPH-LLLVGGSDAFARLYDRRMLPPLTSCQ  224 (732)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~  224 (732)
                      .....             +-...... ..+.   .....+..+++  +|..+. ++++...+|.+..|++.....-. . 
T Consensus       108 p~~~~-------------l~~i~~~~-~pv~---t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-~-  168 (355)
T 3amr_A          108 GKNGT-------------LQSMTDPD-HPIA---TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-I-  168 (355)
T ss_dssp             TTTCC-------------EEECSCTT-SCEE---CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-E-
T ss_pred             CCCCc-------------eeeccccc-cCcC---CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-c-
Confidence            22110             00000000 0000   01135566666  775443 67788889999999984321000 0 


Q ss_pred             cCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          225 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                          ..+.++.+.      .   ...+-.++..+....|+.+-.+..|..++...
T Consensus       169 ----~~~lVR~f~------l---gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p  210 (355)
T 3amr_A          169 ----SGKKVRAFK------M---NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEP  210 (355)
T ss_dssp             ----EEEEEEEEE------C---SSCEEEEEEETTTTEEEEEETTTEEEEEECST
T ss_pred             ----cceEEEEec------C---CCCcceEEEcCCCCeEEEecccceEEEEeCCc
Confidence                001112221      0   11477899999888999999986666666443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=90.64  E-value=6.1  Score=38.46  Aligned_cols=107  Identities=11%  Similarity=0.059  Sum_probs=52.2

Q ss_pred             CCCEEEEEeC----C-----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-----CcEEEEEcCC
Q 004745           30 KGSLLISGSD----D-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSR   95 (732)
Q Consensus        30 dg~~lasg~~----d-----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-----g~i~vwd~~~   95 (732)
                      ++.+++.|+.    +     ..+.++|+.+.+....-.......-.++... +  +.+++.|+.+     ..+.+||+.+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~  146 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-D--GHIYAVGGSHGCIHHNSVERYEPER  146 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-T--TEEEEECCEETTEECCCEEEEETTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE-C--CEEEEEcCCCCCcccccEEEECCCC
Confidence            5666777665    2     4688899887764332110111111122222 3  3677776643     3588888876


Q ss_pred             CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCC
Q 004745           96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS  150 (732)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~  150 (732)
                      ..-..        +..+......-..+.+   ++.+++.|+.+     ..+.+||+.+.+
T Consensus       147 ~~W~~--------~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~  195 (308)
T 1zgk_A          147 DEWHL--------VAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNE  195 (308)
T ss_dssp             TEEEE--------CCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             CeEeE--------CCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence            43211        1111111111112222   44677777654     347777776543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=90.55  E-value=13  Score=43.91  Aligned_cols=210  Identities=10%  Similarity=0.125  Sum_probs=114.7

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCC
Q 004745           27 WNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI  106 (732)
Q Consensus        27 ~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  106 (732)
                      .+|..+.||-=. ..++.|+|+++.+.++.+  .....|.-=.|-..   +.|+-.+ +..|..|++...+         
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~--~~~e~VvfWkWis~---~~l~lVT-~~aVyHW~~~~~s---------  136 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAH--TMTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGES---------  136 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhccc--ccCCCceEEEecCC---CeeEEEc-CCeEEEeccCCCC---------
Confidence            456666666543 578999999998888776  23456777777665   4555544 5679999996421         


Q ss_pred             CCceeeccc----cCceeEEEEecCCCcEEE-EEe------CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004745          107 TPSALYQCH----TRRVKKLAVEVGNPHVVW-SAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  175 (732)
Q Consensus       107 ~~~~~~~~h----~~~v~~l~~~p~~~~~l~-s~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (732)
                      .|++.+.-|    ...|..-..+++. ++++ +|-      -.|.+.+|..+....  ....+|..+-..+.        
T Consensus       137 ~P~k~fdR~~~L~~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~s--Q~iegha~~F~~~~--------  205 (1630)
T 1xi4_A          137 QPVKMFDRHSSLAGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIEGHAASFAQFK--------  205 (1630)
T ss_pred             ccHHHHhcchhcccCeeEEeeeCCCC-CeEEEEeeccCCCcccceeeeeecccccc--hhhhHhHhhhheec--------
Confidence            334444444    3567777777755 4444 332      347788888766542  11222221110000        


Q ss_pred             cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC-CCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004745          176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  254 (732)
Q Consensus       176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  254 (732)
                        .....+...+.+.+.-.         ...+.++|.++... .....+...     .+..+.|.    ....+. ..++
T Consensus       206 --~~~~~~~~~l~~f~~~~---------~~g~kLhi~Ei~~~~~~~~~f~kk-----~~~~~~~~----~~~~Df-pv~~  264 (1630)
T 1xi4_A          206 --MEGNAEESTLFCFAVRG---------QAGGKLHIIEVGTPPTGNQPFPKK-----AVDVFFPP----EAQNDF-PVAM  264 (1630)
T ss_pred             --cCCCCCCceEEEEEEec---------CCCceEEEEecCCCccCCCCCccc-----cccccCCc----ccccCc-ceEE
Confidence              00000111122222211         11368999998643 111111110     11111111    222333 4568


Q ss_pred             EEcCCCCEEEEEecCCeEEEEECCCCCCcc
Q 004745          255 TFSPNGEEVLLSYSGEHVYLMDVNHAGGRA  284 (732)
Q Consensus       255 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~  284 (732)
                      ..++.-..++.-+.-|.|++||+.++....
T Consensus       265 ~vs~k~g~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          265 QISEKHDVVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             EeccccCEEEEEecCceEEEEecccchhhh
Confidence            888888889999999999999999976443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=90.23  E-value=8  Score=37.60  Aligned_cols=65  Identities=12%  Similarity=0.094  Sum_probs=35.2

Q ss_pred             CCCEEEEEeC----CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC----C-----CcEEEEEcCCC
Q 004745           30 KGSLLISGSD----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG----D-----AEVRLFNLSRF   96 (732)
Q Consensus        30 dg~~lasg~~----dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~----d-----g~i~vwd~~~~   96 (732)
                      ++.+++.|+.    -..+.++|+.+.+....-.......-.++... +  +.+++.|+.    +     ..+.+||+.+.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-G--GLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-T--TEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-C--CEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            5667777763    24689999888764432100111111122222 3  366777665    2     45888888764


Q ss_pred             C
Q 004745           97 S   97 (732)
Q Consensus        97 ~   97 (732)
                      .
T Consensus       101 ~  101 (308)
T 1zgk_A          101 Q  101 (308)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=90.00  E-value=17  Score=36.29  Aligned_cols=111  Identities=12%  Similarity=0.022  Sum_probs=60.5

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-eEEEEc--cCCCcCeEEEEEecC---CCCCEEEEEEC---C----
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIE--TGHSANVFCTKFVPE---TSDELVVSGAG---D----   85 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~-~~~~~~--~~h~~~V~~~~~s~~---~~g~~l~s~~~---d----   85 (732)
                      -..-..|+|.|+|+++++ ..++.|+++| .+++ .+..+.  .........|+|+|+   . +.++++-..   +    
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKK-SWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcC-CEEEEEEeccCCCCCcc
Confidence            345678999999985555 5569999997 4454 222221  122356889999996   3 344444432   3    


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCc-eeec-cccCceeEEEEecCCCcEEEEEe
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPS-ALYQ-CHTRRVKKLAVEVGNPHVVWSAS  136 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~-~~~~-~h~~~v~~l~~~p~~~~~l~s~s  136 (732)
                      ..|..|+.........   ..+.+ ..+. ........|+|.|++ .++++.+
T Consensus       105 ~~v~r~~~~~~~~~~~---~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G  153 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLK---EVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTG  153 (354)
T ss_dssp             EEEEEEEECSSSCCEE---EEEEEEEEEECCSSCCCCCEEECTTS-CEEEECC
T ss_pred             eEEEEEEECCCCcCcC---ccEEEEEcCCCCCCcCCceEEECCCC-cEEEEEC
Confidence            5677777653211100   00001 1111 111124678999965 6666544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=88.86  E-value=17  Score=35.29  Aligned_cols=67  Identities=12%  Similarity=0.087  Sum_probs=35.3

Q ss_pred             EcCCCCEEEEEeC----CC-------cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-------CcE
Q 004745           27 WNSKGSLLISGSD----DT-------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEV   88 (732)
Q Consensus        27 ~s~dg~~lasg~~----dg-------~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-------g~i   88 (732)
                      ...++.+++.|+.    ++       .+.++|+.+.+....-.......-.++... +  +.+++.|+.+       ..+
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~  129 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-D--DKIYVVAGKDLQTEASLDSV  129 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-T--TEEEEEEEEBTTTCCEEEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-C--CEEEEEcCccCCCCcccceE
Confidence            3456778888873    12       177888887764432101111111222222 3  3677777754       247


Q ss_pred             EEEEcCCC
Q 004745           89 RLFNLSRF   96 (732)
Q Consensus        89 ~vwd~~~~   96 (732)
                      .+||+.+.
T Consensus       130 ~~yd~~~~  137 (318)
T 2woz_A          130 LCYDPVAA  137 (318)
T ss_dssp             EEEETTTT
T ss_pred             EEEeCCCC
Confidence            78888754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=88.64  E-value=5.8  Score=38.44  Aligned_cols=107  Identities=16%  Similarity=0.126  Sum_probs=53.5

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-------CcEEEEEcCCCC
Q 004745           30 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEVRLFNLSRFS   97 (732)
Q Consensus        30 dg~~lasg~~dg-----~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-------g~i~vwd~~~~~   97 (732)
                      ++++++.|+.++     .+.+||+.+.+....-.......-.++... +  +.+++.|+.+       ..+.+||+.+..
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-G--GLLYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-C--CEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence            566777777543     577889887764432211111111222222 3  3666766543       348888887643


Q ss_pred             CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCC
Q 004745           98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS  150 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~  150 (732)
                      -..        +..+....... ++...  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       185 W~~--------~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          185 WTY--------IAEMSTRRSGA-GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EEE--------ECCCSSCCBSC-EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             EEE--------CCCCccccccc-cEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            211        11111111111 22222  44777777754     357788876653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=88.58  E-value=16  Score=36.23  Aligned_cols=77  Identities=10%  Similarity=0.081  Sum_probs=45.8

Q ss_pred             CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce----eeccccCceeEEEEecC---CCcEEEE
Q 004745           62 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA----LYQCHTRRVKKLAVEVG---NPHVVWS  134 (732)
Q Consensus        62 ~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~h~~~v~~l~~~p~---~~~~l~s  134 (732)
                      -.....|+|.|+  |.++++--..|.|++++...+...        .+.    .+.........|+++|+   ++.+.++
T Consensus        31 L~~P~~ia~~pd--G~llVter~~G~I~~v~~~~g~~~--------~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~  100 (347)
T 3das_A           31 LNSPWGLAPLPG--GDLLVSSRDEATITRVDAKTGRKT--------ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY  100 (347)
T ss_dssp             CSSEEEEEECTT--SCEEEEETTTCEEEEECTTTCCEE--------EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred             CCCceEEEEcCC--CcEEEEEecCCEEEEEECCCCcEe--------eecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence            345689999999  577776554899998876532211        111    11223456789999995   3344443


Q ss_pred             Ee--CCCcEEEEECCC
Q 004745          135 AS--EDGTLRQHDFRQ  148 (732)
Q Consensus       135 ~s--~dg~i~vwd~~~  148 (732)
                      -+  .++.|.-|.+..
T Consensus       101 yt~~~~~~v~R~~~~~  116 (347)
T 3das_A          101 FTSASDNRIVRMLYDE  116 (347)
T ss_dssp             EECSSSEEEEEEEBCT
T ss_pred             EecCCCCEEEEEEeCC
Confidence            22  345566666554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=88.14  E-value=13  Score=37.05  Aligned_cols=50  Identities=8%  Similarity=0.103  Sum_probs=34.6

Q ss_pred             CCCEEEEecCCCcEEEEEcCcccEEEE--Ee-cCcccEEEEeecCCCCeEEEe
Q 004745          607 RGDYIASGSDDGRWFIWEKQTGRLIKM--LL-GDEAVVNCVQCHPFDCVVATS  656 (732)
Q Consensus       607 dg~~lasgs~Dg~i~iWd~~tg~~~~~--l~-gH~~~V~~v~fsp~~~~l~S~  656 (732)
                      +|+++++.-..+.|...++..++.+..  +. +-...+..|++.|||.+.++.
T Consensus       288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            577777777777787777776654432  22 223589999999999966643

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=87.96  E-value=25  Score=35.77  Aligned_cols=144  Identities=13%  Similarity=0.149  Sum_probs=86.9

Q ss_pred             chhhhhhccccEeeecc----CCceeEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEE
Q 004745            2 HSSLVRRLSQERELEGH----QGCVNAISWNSKGSLLISGS-------DDTHINVWSYSSRKLLHSIETGHSANVFCTKF   70 (732)
Q Consensus         2 ~~~~~~~~~~~~~l~~h----~~~V~~l~~s~dg~~lasg~-------~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~   70 (732)
                      ||++.....+++.+.-|    ...|..-..+++.++++..|       -.|.+.+|..+.+.. ..+ .+|.+....+..
T Consensus       129 HWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~i-eGhaa~F~~~~~  206 (494)
T 1bpo_A          129 HWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPI-EGHAASFAQFKM  206 (494)
T ss_dssp             EEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEE-CCSEEEEEEEEC
T ss_pred             EecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chh-eeeeeeeEEEec
Confidence            55554455677777665    35777788889999877543       246788998776533 234 688766555544


Q ss_pred             ecCCCC-CEEEEEECC---CcEEEEEcCCC-CCCCCCCCCCCCce---eeccccCceeEEEEecCCCcEEEEEeCCCcEE
Q 004745           71 VPETSD-ELVVSGAGD---AEVRLFNLSRF-SGRGLDDNAITPSA---LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR  142 (732)
Q Consensus        71 s~~~~g-~~l~s~~~d---g~i~vwd~~~~-~~~~~~~~~~~~~~---~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  142 (732)
                      .-+... .+++-+...   +.++|-++... .+...  ...+.+.   .-..-.+-..++..++.. .++....+-|.|+
T Consensus       207 ~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~--f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~  283 (494)
T 1bpo_A          207 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP--FPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIH  283 (494)
T ss_dssp             TTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCC--CCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEE
T ss_pred             CCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCC--ccceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEE
Confidence            322101 234444332   78999998653 12110  0000011   111234556678888855 6777888999999


Q ss_pred             EEECCCCC
Q 004745          143 QHDFRQGS  150 (732)
Q Consensus       143 vwd~~~~~  150 (732)
                      +||+.++.
T Consensus       284 lyDleTgt  291 (494)
T 1bpo_A          284 LYDLETGT  291 (494)
T ss_dssp             EEETTTCC
T ss_pred             EEecccce
Confidence            99999987

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=87.26  E-value=10  Score=36.57  Aligned_cols=107  Identities=11%  Similarity=0.051  Sum_probs=54.3

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-----CcEEEEEcCCCCCC
Q 004745           30 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFSGR   99 (732)
Q Consensus        30 dg~~lasg~~d-----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-----g~i~vwd~~~~~~~   99 (732)
                      ++++++.|+.+     ..+.++|+.+.+....-.......-.++... +  +.+++.|+.+     ..+.+||+.+..-.
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  188 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-S--GVIYCLGGYDGLNILNSVEKYDPHTGHWT  188 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-T--TEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-C--CEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence            56677777643     3688899887764332211111111122222 3  3677777654     45888898764321


Q ss_pred             CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCC
Q 004745          100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS  150 (732)
Q Consensus       100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~  150 (732)
                      .        +..+.........+.+   ++.+++.|+.+     ..+.+||+.+.+
T Consensus       189 ~--------~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          189 N--------VTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             E--------ECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             e--------CCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            1        1111111111112222   44777777764     357888877654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=86.99  E-value=8.8  Score=37.20  Aligned_cols=148  Identities=7%  Similarity=0.087  Sum_probs=74.0

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---------CCcEEEEEcC
Q 004745           30 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---------DAEVRLFNLS   94 (732)
Q Consensus        30 dg~~lasg~~d------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---------dg~i~vwd~~   94 (732)
                      ++++++.|+.+      ..+.+||+.+.+....-.......-.++... +  +.+++.|+.         -..+.+||+.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~~yd~~  177 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-N--GLIYVCGGSLGNNVSGRVLNSCEVYDPA  177 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-C--CEEEEECCCCCCCCcccccceEEEeCCC
Confidence            56777777754      4688999988764432111111111122222 3  366666653         3458889988


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCPPAGSSHQECRNILLDL  169 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  169 (732)
                      +..-..        +..+...... .++...  ++.+++.|+.+     ..+.+||+.+.+-                  
T Consensus       178 ~~~W~~--------~~~~p~~r~~-~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W------------------  228 (306)
T 3ii7_A          178 TETWTE--------LCPMIEARKN-HGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEW------------------  228 (306)
T ss_dssp             TTEEEE--------ECCCSSCCBS-CEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEE------------------
T ss_pred             CCeEEE--------CCCccchhhc-ceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcE------------------
Confidence            643211        1111111111 122222  44677776654     3577888766531                  


Q ss_pred             cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-----CeEEEEECCCC
Q 004745          170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRML  217 (732)
Q Consensus       170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-----g~v~iwd~~~~  217 (732)
                           ..+...+........+.+  + +.+++.|+.+     ..+.+||+.+.
T Consensus       229 -----~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          229 -----KMVSPMPWKGVTVKCAAV--G-SIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             -----EECCCCSCCBSCCEEEEE--T-TEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             -----EECCCCCCCccceeEEEE--C-CEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence                 111111212222233333  2 6688888754     56888998764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=86.44  E-value=8.8  Score=38.07  Aligned_cols=127  Identities=11%  Similarity=0.065  Sum_probs=67.6

Q ss_pred             cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE--EEEc---cCCCcCeEEEEEecC--CCCCEEEEEE-
Q 004745           12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIE---TGHSANVFCTKFVPE--TSDELVVSGA-   83 (732)
Q Consensus        12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~--~~~~---~~h~~~V~~~~~s~~--~~g~~l~s~~-   83 (732)
                      +..+...-..-..|+|.|||+++++--..|.|++++..+++..  ..+.   .........|+|+|+  .++.+.++-+ 
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            3444444566789999999998777655899999987665432  2221   123566899999995  1134444322 


Q ss_pred             -CCCcEEEEEcCCCCCCCCCCCCCCCc-eeec-cccCceeEEEEecCCCcEEEEEeCCC
Q 004745           84 -GDAEVRLFNLSRFSGRGLDDNAITPS-ALYQ-CHTRRVKKLAVEVGNPHVVWSASEDG  139 (732)
Q Consensus        84 -~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg  139 (732)
                       .++.|.-|.+.............+.+ ..+. .....-..|+|.|++ .++++.+..+
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~  161 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESG  161 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTT
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCC
Confidence             34455555554321100000001111 1111 111134568888855 6666655443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=86.26  E-value=34  Score=35.43  Aligned_cols=114  Identities=9%  Similarity=0.158  Sum_probs=61.6

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee--EEEEcc-----CCCcCeEEEEEecC---CCCCEEEEEEC----
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIET-----GHSANVFCTKFVPE---TSDELVVSGAG----   84 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~--~~~~~~-----~h~~~V~~~~~s~~---~~g~~l~s~~~----   84 (732)
                      -..-..|+|.|+|+++++-...+.|++++..+++.  +..+..     ........|+|+|+   . +.+.++-+.    
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~-g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN-PYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTS-CEEEEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcC-CEEEEEEeccccC
Confidence            34566999999999777654445788888655543  222311     12456789999994   2 344444432    


Q ss_pred             --------CCcEEEEEcCCCCCCCCCCCCCCCce-eec-cccCceeEEEEecCCCcEEEEEeC
Q 004745           85 --------DAEVRLFNLSRFSGRGLDDNAITPSA-LYQ-CHTRRVKKLAVEVGNPHVVWSASE  137 (732)
Q Consensus        85 --------dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~-~h~~~v~~l~~~p~~~~~l~s~s~  137 (732)
                              ...|.-|++........   ..+.+. .+. ........|+|.|++ .++++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLE---KPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEE---EEEEEEEEECCCSSCCEEEEEECTTS-CEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcC---CcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEECC
Confidence                    12455555432111100   000111 111 112246889999966 66666554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=86.11  E-value=2.2  Score=38.94  Aligned_cols=108  Identities=10%  Similarity=-0.041  Sum_probs=60.8

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee------EEEEc-cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004745           20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------LHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN   92 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~------~~~~~-~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd   92 (732)
                      ..+..++|+|+|.+.++  .+|.+.-.+..+.+.      -..+= .+-.. -.++.|.|+  |.+.++  .||.|.-++
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~--G~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPN--GYLYAV--SKDKLYKAS  113 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTT--SCEEEE--ETTEEEEES
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCC--CCEEEe--CCCEEEEeC
Confidence            37789999999997777  567766666544211      11110 01111 478899998  466655  569887776


Q ss_pred             cCCCCCCCCCCCCCCCceee--ccccCceeEEEEecCCCcEEEEEeCCCcEE
Q 004745           93 LSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLR  142 (732)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  142 (732)
                      ..+......     .-....  .+-=..+..|.+.|++ .+.+..  |+.+.
T Consensus       114 pP~~~~~~W-----l~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~ly  157 (236)
T 1tl2_A          114 PPQSDTDNW-----IARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFY  157 (236)
T ss_dssp             CCCSTTCCH-----HHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEE
T ss_pred             CCcCCCCce-----eccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEE
Confidence            543221110     000011  1111467899999955 665554  77754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=84.57  E-value=2.5  Score=41.77  Aligned_cols=110  Identities=15%  Similarity=0.159  Sum_probs=62.5

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEe--cCCCCCEEEEE-ECCCcEEEEEcCCCCCCCCCCCCCCC
Q 004745           32 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV--PETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITP  108 (732)
Q Consensus        32 ~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s--~~~~g~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~  108 (732)
                      .+++.++.||.|.-.|..+|+.+.++......++....-.  +.. +..++.. ..||.|..++..++..+.        
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~-~~~~vv~p~~dG~l~a~~~~~G~~~~--------   81 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLET-YETLIIEPFGDGNIYYFNAHQGLQKL--------   81 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTS-SEEEEECCSTTTEEEEEETTTEEEEE--------
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccC-CcEEEEEECCCCEEEEEECCCCcEEe--------
Confidence            4688899999999999999999998843311233322100  111 2333333 578999888876531110        


Q ss_pred             ceeecc--ccCceeE---EEE-ec---CCCcEEEEEeCCCcEEEEECCCCC
Q 004745          109 SALYQC--HTRRVKK---LAV-EV---GNPHVVWSASEDGTLRQHDFRQGS  150 (732)
Q Consensus       109 ~~~~~~--h~~~v~~---l~~-~p---~~~~~l~s~s~dg~i~vwd~~~~~  150 (732)
                      ......  ...++..   ... .+   ..+..+++++.+|.+...|+.+++
T Consensus        82 ~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~  132 (339)
T 2be1_A           82 PLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE  132 (339)
T ss_dssp             EEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred             eeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence            000000  1111111   000 00   023577899999999999999997

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=84.29  E-value=31  Score=33.35  Aligned_cols=60  Identities=10%  Similarity=0.112  Sum_probs=32.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC----C-------CcEEEEEcCCC
Q 004745           33 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG----D-------AEVRLFNLSRF   96 (732)
Q Consensus        33 ~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~----d-------g~i~vwd~~~~   96 (732)
                      +++.|+  ..+.+||+.+++....-...............+  +.+++.|+.    +       ..+.+||+.+.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~   77 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE--NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS   77 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT--CCEEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC--CEEEEEcCcccCCCCCccccccceEEecCCCC
Confidence            445565  569999999887543221111122222222334  477777873    1       12677888754

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=83.52  E-value=37  Score=33.63  Aligned_cols=63  Identities=8%  Similarity=0.057  Sum_probs=36.4

Q ss_pred             CCceeEEEEcCC---CCEEEEE-eCC-----CcEEEEeCCCCe-----eEE-EEc--cCCCcCeEEEEEecCCCCCEEEE
Q 004745           19 QGCVNAISWNSK---GSLLISG-SDD-----THINVWSYSSRK-----LLH-SIE--TGHSANVFCTKFVPETSDELVVS   81 (732)
Q Consensus        19 ~~~V~~l~~s~d---g~~lasg-~~d-----g~i~vWd~~~~~-----~~~-~~~--~~h~~~V~~~~~s~~~~g~~l~s   81 (732)
                      ......|+|+|+   +..|..+ ...     +.|..++...+.     .+. .+.  .+.......++|.|+  |.++++
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~  151 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD--GMLYVT  151 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT--SCEEEE
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC--CCEEEE
Confidence            456789999998   4444433 322     568888876431     222 231  111123468999998  466666


Q ss_pred             EE
Q 004745           82 GA   83 (732)
Q Consensus        82 ~~   83 (732)
                      .+
T Consensus       152 ~G  153 (352)
T 2ism_A          152 TG  153 (352)
T ss_dssp             CC
T ss_pred             EC
Confidence            43

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=82.18  E-value=20  Score=39.55  Aligned_cols=110  Identities=9%  Similarity=0.038  Sum_probs=57.4

Q ss_pred             CCCCEEEEEeCC----CcEEEEeCCCCeeEEEE-c-----cCCCcCeEEEEEec-CCCCCEEEEEECCC------cEEEE
Q 004745           29 SKGSLLISGSDD----THINVWSYSSRKLLHSI-E-----TGHSANVFCTKFVP-ETSDELVVSGAGDA------EVRLF   91 (732)
Q Consensus        29 ~dg~~lasg~~d----g~i~vWd~~~~~~~~~~-~-----~~h~~~V~~~~~s~-~~~g~~l~s~~~dg------~i~vw   91 (732)
                      .++..++.||.+    ..+.+||+.+++....- .     ......-.++...+ +  +.+++.|+.++      .+.+|
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~--~~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN--NQLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT--TEEEEECCBSSTTCBCCCCEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC--CEEEEEcCCCCCCCccccEEEE
Confidence            456777777753    46888998877644322 1     01111112333332 4  47777777543      47788


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC--cEEEEECCCCC
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGS  150 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~  150 (732)
                      |+.+..-..        +..+..-.. -.+++... ++.+++.|+.++  .+.+||+.+..
T Consensus       474 d~~t~~W~~--------~~~~p~~R~-~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~  524 (695)
T 2zwa_A          474 DMKTREWSM--------IKSLSHTRF-RHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEI  524 (695)
T ss_dssp             ETTTTEEEE--------CCCCSBCCB-SCEEEECT-TSCEEEECCBCSSCSEEEEETTTTE
T ss_pred             eCCCCcEEE--------CCCCCCCcc-cceEEEEc-CCEEEEECCCCCCCCEEEEECCCCc
Confidence            887633211        111111111 11222222 447777877654  68888887754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=80.79  E-value=20  Score=34.87  Aligned_cols=107  Identities=8%  Similarity=0.067  Sum_probs=52.1

Q ss_pred             CCCEEEEEeCC-------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC------CCcEEEEEcCCC
Q 004745           30 KGSLLISGSDD-------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG------DAEVRLFNLSRF   96 (732)
Q Consensus        30 dg~~lasg~~d-------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~------dg~i~vwd~~~~   96 (732)
                      ++++++.|+.+       ..+.++|+.+.+....-.......-.++.. .+  +.+++.|+.      -..+.+||+.+.
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HN--GMIYCLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ET--TEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-EC--CEEEEEcCCCCCCCccceEEEEcCCCC
Confidence            56677777753       357888988776443210011111112222 23  366676654      235888998864


Q ss_pred             CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC-----cEEEEECCCCC
Q 004745           97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGS  150 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-----~i~vwd~~~~~  150 (732)
                      .-..        +..+...... .+++..  ++.+++.|+.++     .+.+||+.+.+
T Consensus       186 ~W~~--------~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          186 DWKD--------LAPMKTPRSM-FGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EEEE--------ECCCSSCCBS-CEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             EEEE--------CCCCCCCccc-ceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            3211        1111111111 122222  447777776542     46678876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	732
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.003
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.001
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.004
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.5 bits (163), Expect = 1e-12
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 568 SSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT 627
           +  +D      +   D +     H N+   I   SF  + G  + +G DD    +W+   
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALK 301

Query: 628 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
                +L G +  V+C+        VAT   D+ +KIW
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.1 bits (149), Expect = 6e-11
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 14/138 (10%)

Query: 6   VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINV-WSYSSRKLLHSIETGHSAN 64
           VR     +   GH+  +NAI +   G+   +GSDD    +    + ++L+          
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272

Query: 65  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 124
           +    F    S  L+++G  D    +++  +             + +   H  RV  L V
Sbjct: 273 ITSVSFSK--SGRLLLAGYDDFNCNVWDALKA----------DRAGVLAGHDNRVSCLGV 320

Query: 125 EVGNPHVVWSASEDGTLR 142
                 V  + S D  L+
Sbjct: 321 TDDGMAVA-TGSWDSFLK 337

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 18  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 77
               + ++S++  G LL++G DD + NVW          +  GH   V C     +    
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDD--GM 325

Query: 78  LVVSGAGDAEVRLFN 92
            V +G+ D+ ++++N
Sbjct: 326 AVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (126), Expect = 5e-08
 Identities = 40/273 (14%), Positives = 76/273 (27%), Gaps = 20/273 (7%)

Query: 8   RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 67
           ++   R L GH   + A+ W +   LL+S S D  + +W   +   +H+I    S+ V  
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMT 102

Query: 68  TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG 127
             +          + +G+        +  S   L           +              
Sbjct: 103 CAY----------APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152

Query: 128 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL 187
           + + + ++S D T    D   G           +  ++           L        S 
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL----SLAPDTRLFVSGACDASA 208

Query: 188 KSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 244
           K  D+          G      A     +       T           +     +    H
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELMTYSH 266

Query: 245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 277
                 +T V+FS +G  +L  Y   +  + D 
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 12/133 (9%)

Query: 18  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 77
           H G V ++S      L +SG+ D    +W         +  TGH +++    F P  +  
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFP--NGN 239

Query: 78  LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 137
              +G+ DA  RLF+L               +  +      +  ++       ++ +  +
Sbjct: 240 AFATGSDDATCRLFDLRADQ--------ELMTYSHDNIICGITSVSFSKSGRLLL-AGYD 290

Query: 138 DGTLRQHDFRQGS 150
           D      D  +  
Sbjct: 291 DFNCNVWDALKAD 303

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 6   VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 47
             +  +   L GH   V+ +     G  + +GS D+ + +W+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 606 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
                  SG+ D    +W+ + G   +   G E+ +N +   P     AT   D T +++
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 573 RIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIK 632
            I       +  ++   GH      +      G     + S S DG+  IW+  T   + 
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMH----WGTDSRLLVSASQDGKLIIWDSYTTNKVH 91

Query: 633 MLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
            +    + V      P    VA  G+DN   I+
Sbjct: 92  AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 2e-12
 Identities = 30/244 (12%), Positives = 71/244 (29%), Gaps = 25/244 (10%)

Query: 15  LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-----TGHSANVFCTK 69
            + H   + ++S  +     +S S D ++ VW        +  +       H + +    
Sbjct: 10  GKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 70  FVPETS-----DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 124
            +           LV + +   ++  + ++R                          L  
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 125 EVGNPHVVW----SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180
              N  ++     +    GT     F   +    + + +      L       + ++  P
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL-------QGTVESP 180

Query: 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240
              +    S DIS     L+  G ++   ++ +   L PL + + + S     N    + 
Sbjct: 181 MTPSQFATSVDISER--GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238

Query: 241 LSEH 244
            S  
Sbjct: 239 FSPQ 242

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 2/105 (1%)

Query: 1   MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 60
             S              H   V ++S+N  G  L S   D  +  W   +++ + ++   
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL-NM 329

Query: 61  HSANVFCTKF-VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 104
           H  ++   +  +        ++  G  +V+       SG G D N
Sbjct: 330 HCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 374

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 13/71 (18%)

Query: 608 GDYIASGSDDGRWFIWEKQTGRLI------------KMLLGDEAVVNCVQCHPFD-CVVA 654
             +  S S DG   +W+ +                 K  L    V+  ++   F+ C+VA
Sbjct: 24  NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 83

Query: 655 TSGIDNTIKIW 665
           T+     +  +
Sbjct: 84  TTSFSGDLLFY 94

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (158), Expect = 4e-12
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 13  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
             L GH   V  + ++S G  ++S +DD  + VW Y +++ + ++   H   V    F  
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHK 299

Query: 73  ETSDELVVSGAGDAEVRLF 91
             +   VV+G+ D  V+++
Sbjct: 300 --TAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 6e-12
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 554 ETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIAS 613
           ET  +        S S++  I     +        VGH N    +         G +I S
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV----LFHSGGKFILS 264

Query: 614 GSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
            +DD    +W+ +  R +K L   E  V  +  H     V T  +D T+K+W
Sbjct: 265 CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.4 bits (142), Expect = 5e-10
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 8  RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 67
          R  ++  L GH+  V  + ++   S+++S S+D  I VW Y +     +++ GH+ +V  
Sbjct: 6  RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQD 64

Query: 68 TKFVP 72
            F  
Sbjct: 65 ISFDH 69

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 10/153 (6%)

Query: 6   VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
           V+     +   GH+  V  +  N  G+L+ S S+D  + VW  ++++    +   H   V
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL-REHRHVV 188

Query: 66  FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI--------TPSALYQCHTR 117
            C  + PE+S   +    G    +      F   G  D  I                H  
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248

Query: 118 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 150
            V+ +    G   ++ S ++D TLR  D++   
Sbjct: 249 WVRGVLFHSGGKFIL-SCADDKTLRVWDYKNKR 280

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 18/88 (20%), Positives = 32/88 (36%)

Query: 578 PETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGD 637
               I                 +    G+ G ++ SGS D    +W+  TG  +  L+G 
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 638 EAVVNCVQCHPFDCVVATSGIDNTIKIW 665
           +  V  V  H     + +   D T+++W
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVW 274

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 8/41 (19%), Positives = 19/41 (46%)

Query: 6   VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW 46
            +     + L  H+  V ++ ++     +++GS D  + VW
Sbjct: 276 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC 651
              + S S+D    +W+ +TG   + L G    V  +       
Sbjct: 29  FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.3 bits (149), Expect = 4e-11
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 70
          ++   GH   + A+S ++ G  L S   + HIN W  S+          H+  +   K 
Sbjct: 5  DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 4e-05
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 610 YIASGSDDGRWFIWEKQTGRLIKMLL---GDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
            +A+GS D    +W         +++      + VN V     +  + ++G D+ IK W
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 584 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLL-GDEAVVN 642
           + Q   GH    T +         G  + S   +G    W+  TG   ++       ++ 
Sbjct: 4   IDQVRYGHNKAITALS----SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59

Query: 643 CVQCHPFDCVVATSGIDNTIKIWTPSASV 671
            ++      +   S  D+   +    + V
Sbjct: 60  GIKTTSKGDLFTVSWDDHLKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 18  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSD 76
           H   V  +SW+     L +GS D  + VW+ +       I +  H+ +   +      ++
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL--NE 280

Query: 77  ELVVSGAGDAEVRLFNLS 94
             +VS   D+ ++ +N+ 
Sbjct: 281 TTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 4/38 (10%), Positives = 13/38 (34%)

Query: 628 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
           G + ++  G    +  +        + ++  +  I  W
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 39

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 4e-10
 Identities = 40/231 (17%), Positives = 75/231 (32%), Gaps = 21/231 (9%)

Query: 11  QERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
           Q   L GH   V   + +    + +I+G+DD  I V+   ++K L  +  GH   V+  K
Sbjct: 4   QRTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALK 60

Query: 70  FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 129
           +       ++VSG+ D  VR++++ +     + +   +          +         N 
Sbjct: 61  YAH---GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK---------NI 108

Query: 130 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 189
             + + S D TL      + SS P  G  H                 +           S
Sbjct: 109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA-----S 163

Query: 190 CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240
               S   ++++ G  D    ++D   +  L              Y     
Sbjct: 164 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 214

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 2e-08
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 18  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 77
           H   ++AI+       ++    +   N+++  S KL+H+     +  ++   F       
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG---KT 336

Query: 78  LVVSGAGDAEVRLFNLSRFS 97
           LV +   D +  L  L  FS
Sbjct: 337 LVAAVEKDGQSFLEILD-FS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 4e-06
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 584 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIK-MLLGDEAVVN 642
                       T++   +      + + SGS+  ++ I+  ++G+L+   +L D   + 
Sbjct: 270 ANDYSRKFSYHHTNLSAITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANILKDADQIW 328

Query: 643 CVQCHPFDCVVATSGIDNTIKIW 665
            V       +VA    D    + 
Sbjct: 329 SVNFKG-KTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 9/61 (14%), Positives = 23/61 (37%)

Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 667
            +Y+ +G+DD    +++    + +  L G +  V  ++      +V+ S           
Sbjct: 23  DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 82

Query: 668 S 668
            
Sbjct: 83  K 83

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 6/302 (1%)

Query: 6   VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
                   +L GH G V A+ + + G +L+SGS D  + VW        H  E  +S   
Sbjct: 40  SINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 98

Query: 66  FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125
                  +     +V+G+ D  + ++ L + S             ++         + V 
Sbjct: 99  CLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157

Query: 126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 185
            G+   V + S  G +        ++      +  +C  IL         ++ D  ++  
Sbjct: 158 RGHMASVRTVSGHGNIVVSGSYD-NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216

Query: 186 SLKSCD--ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243
              S D  I         +  +          +           +      +    +  +
Sbjct: 217 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK 276

Query: 244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 303
                 +L+ +T     + +L+S S     + ++  +G       + DA +I S      
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR-SGKLVHANILKDADQIWSVNFKGK 335

Query: 304 GL 305
            L
Sbjct: 336 TL 337

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.8 bits (143), Expect = 5e-10
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 18  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-- 75
           H+  V +++       ++SGS D  +  W   S   L  ++ GH  +V        +S  
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLG 365

Query: 76  --DELVVSGAGDAEVRLFNLSR 95
               +  +G+GD + R++   +
Sbjct: 366 PEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 6e-10
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 28/155 (18%)

Query: 10  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS------- 62
           S+     GH+  V ++ +   G  ++SGS D  + +W+  +       +T +S       
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 63  ----ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 118
                 V         +DE ++SG+ D  V  ++               P  + Q H   
Sbjct: 305 IGHKDFVLSVATTQ--NDEYILSGSKDRGVLFWDKKSG----------NPLLMLQGHRNS 352

Query: 119 VKKLAVEVG-----NPHVVWSASEDGTLRQHDFRQ 148
           V  +AV  G       +V  + S D   R   +++
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (141), Expect = 9e-10
 Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 6/88 (6%)

Query: 584 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNC 643
                        D   +    Q  +YI SGS D     W+K++G  + ML G    V  
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355

Query: 644 VQC------HPFDCVVATSGIDNTIKIW 665
           V         P   V AT   D   +IW
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 37/291 (12%), Positives = 75/291 (25%), Gaps = 41/291 (14%)

Query: 17  GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-----------------T 59
            H   V  + +++ G  L +G + T   V+  S   L+  +                   
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 60  GHSANVFCTKFVPETSDELVVS--------GAGDAEVRLFNLSRFSGRGLDDNAITPSAL 111
                +    F P+       +           + ++ +            D   +   L
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 112 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171
                 R  ++         +  + EDG               AGS  +  R  + D   
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR--VWDSET 236

Query: 172 GAKRSLADPPKQTLSLKSCDISSTRPH----LLLVGGSDAFARLYDRRMLPPLTSCQKRM 227
           G      D   ++ +     + S         ++ G  D   +L++ +     +  +   
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296

Query: 228 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 278
           S    V Y               +  V  + N E +L       V   D  
Sbjct: 297 SGTCEVTYIGHKD---------FVLSVATTQNDEYILSGSKDRGVLFWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 9e-04
 Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 12/70 (17%)

Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLG------------DEAVVNCVQCHPFDCVVAT 655
           G  + SGS D    +W  Q                       +  V  V     D  + +
Sbjct: 266 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 325

Query: 656 SGIDNTIKIW 665
              D  +  W
Sbjct: 326 GSKDRGVLFW 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 9e-04
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 584 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRL-------IKMLLG 636
              +     ++   +   +     G YIA+GS D    +W+ +TG L        +   G
Sbjct: 193 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 252

Query: 637 DEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
            +  V  V        V +  +D ++K+W
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 8/54 (14%)

Query: 6   VRRLSQERELEGHQGCVNAI------SWNSKGSLLISGSDDTHINVWSYSSRKL 53
            +  +    L+GH+  V ++      S   + ++  +GS D    +W Y  +K+
Sbjct: 337 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY--KKI 388

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 7e-10
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 18  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 77
           H+ CV ++ +   G   +S   D  +N W       +   ++  S++V          D+
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF--QSKESSSVLSCDISV--DDK 319

Query: 78  LVVSGAGDAEVRLFNL 93
            +V+G+GD +  ++ +
Sbjct: 320 YIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 6e-09
 Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 1/58 (1%)

Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
           G +  S   D     W    G  I     + + V        D  + T   D    ++
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 25/292 (8%), Positives = 74/292 (25%), Gaps = 26/292 (8%)

Query: 17  GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS----RKLLHSIETGHSANVFCTKFVP 72
            H   V A++ ++    + +G     + VW  S       +           +   K +P
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 73  ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132
           +    +V   A    +          +    ++                      +    
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC-----FSCCSD 162

Query: 133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 192
            + +      Q   RQ        S      +       G   ++     +         
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD 222

Query: 193 SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 252
            +++   L       +    +   +   +S  + +       Y   +H          + 
Sbjct: 223 FTSQIFSL------GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH-------ESCVL 269

Query: 253 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 304
            + F+  G+  + +     +      +    A  +   ++S ++S   +++ 
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPY---GASIFQSKESSSVLSCDISVDD 318

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 5/31 (16%), Positives = 11/31 (35%)

Query: 17  GHQGCVNAISWNSKGSLLISGSDDTHINVWS 47
                V +   +     +++GS D    V+ 
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 43/262 (16%), Positives = 79/262 (30%), Gaps = 33/262 (12%)

Query: 8   RLSQERELEGHQGCVN-AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF 66
            L   + L+GH   V   + +   G+ ++SGSDD  + VWS  + K L ++  GH+  V+
Sbjct: 5   ELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVW 61

Query: 67  CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV 126
            ++                           + R L                    +    
Sbjct: 62  SSQMRDNIIIS-----------------GSTDRTLKVWNAETGECIHTLYGHTSTVRCMH 104

Query: 127 GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS------LADP 180
            +   V S S D TLR  D   G             R +  D R     +      + DP
Sbjct: 105 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 164

Query: 181 PKQTLSLK------SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 234
             +T                     ++ G  D   R++D      + +     S    + 
Sbjct: 165 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224

Query: 235 YFCPMHLSEHGRSSLHLTHVTF 256
               + +S +  S++ +  +  
Sbjct: 225 LKDNILVSGNADSTVKIWDIKT 246

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 6e-07
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 17/137 (12%)

Query: 13  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
             L+GH   V ++ ++  G  ++SGS DT I VW   +   +H++ TGH +     +   
Sbjct: 171 HTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTL-TGHQSLTSGMEL-- 225

Query: 73  ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132
              D ++VSG  D+ V+++++                   Q   +    +     N + V
Sbjct: 226 --KDNILVSGNADSTVKIWDIKTG----------QCLQTLQGPNKHQSAVTCLQFNKNFV 273

Query: 133 WSASEDGTLRQHDFRQG 149
            ++S+DGT++  D + G
Sbjct: 274 ITSSDDGTVKLWDLKTG 290

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 8e-06
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLL-----GDEAVVNCVQCHPFDCVVATSGIDNT- 661
            +++ + SDDG   +W+ +TG  I+ L+     G   VV  ++      V A    + T 
Sbjct: 270 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 329

Query: 662 ---IKIW 665
              + + 
Sbjct: 330 ETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHP 648
           G+ I SGSDD    +W   TG+ ++ L+G    V   Q   
Sbjct: 27  GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
           G ++ SGS D    +W+ +TG  I  L G +++ + ++      ++ +   D+T+KIW
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIW 242

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 13/85 (15%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 18  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET----GHSANVFCTKFVPE 73
           HQ  V  + +N   + +I+ SDD  + +W   + + + ++ T    G    V+  +    
Sbjct: 259 HQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN- 315

Query: 74  TSDELVVSGAGD----AEVRLFNLS 94
            +  +   G+ +     ++ + +  
Sbjct: 316 -TKLVCAVGSRNGTEETKLLVLDFD 339

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 27/247 (10%), Positives = 64/247 (25%), Gaps = 5/247 (2%)

Query: 9   LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 68
           L +          V  + ++     ++SG  D  I +W  ++ +    + TGH+ +V C 
Sbjct: 5   LQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCL 61

Query: 69  KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 128
           ++                          +     +  +             K  ++ V +
Sbjct: 62  QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 129 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 188
                  +    L  H                   +  + +   +              +
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH--KR 179

Query: 189 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248
                  R  L++ G SD   RL+D      L   +       C+ +     +S      
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 239

Query: 249 LHLTHVT 255
           + +  + 
Sbjct: 240 IKVWDLV 246

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 8e-07
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 11/128 (8%)

Query: 15  LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 74
           L GH+  +  + +     L++SGS D  I +W       L  +E                
Sbjct: 174 LNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-- 229

Query: 75  SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 134
               +VSGA D ++++++L            +    L + H+ RV +L     +   + S
Sbjct: 230 ---RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE-HSGRVFRLQF---DEFQIVS 282

Query: 135 ASEDGTLR 142
           +S D T+ 
Sbjct: 283 SSHDDTIL 290

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 610 YIASGSDDGRWFIWEKQTG---------RLIKMLLGDEAVVNCVQCHPFDCVVATSGIDN 660
            I SG+ DG+  +W+               ++ L+     V  +Q   F   + +S  D+
Sbjct: 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDD 287

Query: 661 TIKIW 665
           TI IW
Sbjct: 288 TILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCV 652
              I SG  D    IW+K T    ++L G    V C+Q      +
Sbjct: 25  DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 13  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVW 46
           R L  H G V  + ++     ++S S D  I +W
Sbjct: 261 RTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 610 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
           YI S S D    +W   T   ++ L G +  + C      D +V +   DNTI++W
Sbjct: 150 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLW 203

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 6e-09
 Identities = 31/308 (10%), Positives = 77/308 (25%), Gaps = 24/308 (7%)

Query: 15  LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET--GHSANVFCTKFVP 72
            +  +  ++ I      SLL+  S D  + V+ +  +     +     +   + C  F+ 
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 73  ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132
            T  ++ V       +++  +   S + L +N         C     K +A        V
Sbjct: 67  NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126

Query: 133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI--------------LLDLRCGAKRSLA 178
                 G          S+     +                         L      +  
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186

Query: 179 DPPKQTLSLKSCD-ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 237
                         +             D    +          +  KR +      + C
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA------FRC 240

Query: 238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS 297
                +    +  +  + FSP  + +  + S   +   ++     +   +   +   ++ 
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ-TRKKIKNFAKFNEDSVVK 299

Query: 298 FTPTLNGL 305
              + N L
Sbjct: 300 IACSDNIL 307

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 5e-06
 Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 10/102 (9%)

Query: 11  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 70
              +       VN+I ++ +   L +   D  I+ W+  +RK + +    +  +V   K 
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV--VKI 300

Query: 71  VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY 112
               SD ++     D      +  + +        +  S++Y
Sbjct: 301 AC--SDNILCLATSD------DTFKTNAAIDQTIELNASSIY 334

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 610 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
           ++ +   DG    W  QT + IK           V+    D ++  +  D+T K  
Sbjct: 265 FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS-VVKIACSDNILCLATSDDTFKTN 319

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.9 bits (130), Expect = 1e-08
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 18  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 77
           H G V  ++W+  G+ + S S D  I +W+ ++ K+  +I  G          +   + +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQ 294

Query: 78  LVVSGAGDAEVRLFNL 93
            +VS + +  +   N 
Sbjct: 295 ALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKML-LGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT 666
           G  IAS S D    IW   T ++ K + +G       +        + +   +  I    
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

Query: 667 P 667
           P
Sbjct: 310 P 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 9e-05
 Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 667
           GD I   +     +     +    ++           +  P     A+  +   ++IW  
Sbjct: 29  GDKIQYCNGTSV-YTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT 87

Query: 668 S 668
           +
Sbjct: 88  T 88

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.6 bits (129), Expect = 1e-08
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 584 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWE-KQTGRLIKMLLGDEAVVN 642
            +   +   +     K A+      D +A+GS D   FI+  K+  ++IK L   +  VN
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN 262

Query: 643 CVQCHPFDCVVATSGIDNTIKIWT 666
            +        + +SG D  IK W 
Sbjct: 263 NLLWET-PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
          + + GH   + A++ N     LISGS D  I  WS        S+   HS  +       
Sbjct: 7  KTISGHNKGITALTVNP----LISGSYDGRIMEWS------SSSMHQDHSNLIVSLDNSK 56

Query: 73 ET 74
            
Sbjct: 57 AQ 58

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (108), Expect = 5e-06
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 18  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 77
                 A     +  L+ +GS DT+I ++S      +      H   V    +       
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET---PS 270

Query: 78  LVVSGAGDAEVRLFN 92
            +VS   DA ++ +N
Sbjct: 271 TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 13  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 47
           + L  H+  VN + W +  + L+S   D  I  W+
Sbjct: 252 KALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.9 bits (130), Expect = 2e-08
 Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVV 80
          ++  +WN   + +    ++  ++++  S  K +   E   H+  V    + P      +V
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP--DSNRIV 67

Query: 81 SGAGDAEVRLFN 92
          +   D    ++ 
Sbjct: 68 TCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.8 bits (122), Expect = 2e-07
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 608 GDYIASGSDDGRWFIWEKQTGR--LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
              IA   ++    I+EK   +   +  L      V  V   P    + T G D    +W
Sbjct: 19  RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 78

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 6e-06
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 7  RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY 48
           +  Q  EL+ H G V  + W    + +++   D +  VW+ 
Sbjct: 39 NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 80

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 12/134 (8%)

Query: 18  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 77
               + A+++ ++ SL+ +G D     +++Y S     S   G       +     T+ E
Sbjct: 242 ETLPLLAVTFITESSLVAAGHDC-FPVLFTYDSAAGKLSF-GGRLDVPKQSSQRGLTARE 299

Query: 78  LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 137
              +    A       +      L  N+++  ++      +  +            +   
Sbjct: 300 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC----------TTGM 349

Query: 138 DGTLRQHDFRQGSS 151
           DG +   D R   S
Sbjct: 350 DGGMSIWDVRSLES 363

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 1e-06
 Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 2/77 (2%)

Query: 18  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET-GHSANVFCTKFVPETSD 76
                             +   D  I VW  ++ K +                 V  T +
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-TGN 308

Query: 77  ELVVSGAGDAEVRLFNL 93
             ++S + D  +  + L
Sbjct: 309 GRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 3e-06
 Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ---CHPFDCVVATSGIDNTIKI 664
               A+   D    +W+  T + ++    D+  +   Q       +  + +  +D T+  
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 665 W 665
           +
Sbjct: 323 Y 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 4e-05
 Identities = 11/119 (9%), Positives = 37/119 (31%), Gaps = 5/119 (4%)

Query: 18  HQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPET 74
            +     +S++   + +         +        K+  +       S+ V   KF P  
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 75  SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 133
             + + SG    +V ++  +    +  +   +   + +Q     +  ++ +     +  
Sbjct: 76  GSQYLCSGDESGKVIVWGWT--FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 7/89 (7%)

Query: 7   RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF 66
                   LE      +        +      +   +  +   +RK+     T    N+ 
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-----TEVKNNLT 318

Query: 67  CTKFVPETSDELVVSGAGDAEVRLFNLSR 95
             +   +   + V+    D ++  F L +
Sbjct: 319 DLRLSAD--RKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 6/49 (12%), Positives = 20/49 (40%)

Query: 11  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET 59
           + R++   +  +  +  ++    ++   DD  I  +     +   ++ET
Sbjct: 306 KTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET 354

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 14/147 (9%), Positives = 38/147 (25%), Gaps = 4/147 (2%)

Query: 519 DFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQP 578
                 P     +     +     + +     +  + V  + +S +      +      P
Sbjct: 199 RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP 258

Query: 579 ETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE 638
             V     R +        I      G+   Y     + G    ++ +T ++   +  + 
Sbjct: 259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-TEVKNN- 316

Query: 639 AVVNCVQCHPFDCVVATSGIDNTIKIW 665
             +  ++       V     D  I  +
Sbjct: 317 --LTDLRLSADRKTVMVRKDDGKIYTF 341

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 5e-04
 Identities = 9/85 (10%), Positives = 23/85 (27%), Gaps = 2/85 (2%)

Query: 10  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
              +++  H+          +       +    + V    + + L   E GH   +    
Sbjct: 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE--IDSIN 306

Query: 70  FVPETSDELVVSGAGDAEVRLFNLS 94
              +    L     GD  + + +  
Sbjct: 307 VSQDEKPLLYALSTGDKTLYIHDAE 331

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 350 YYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 409
                +  E  + + + +     H       A + + +   + + A+R    A  +    
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ--GNIEEAVRLYRKALEVFPEF 338

Query: 410 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 444
             AH  ++  L+Q  K +EAL     A  + P+ +
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 2/131 (1%)

Query: 388 WKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 447
                + A+ DC  A  +D  S +AH ++ +   ++  Y EA+     A  L     +  
Sbjct: 50  KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-- 107

Query: 448 EKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSER 507
              ++I   +  A+ ++ N   +     E      L+      R     +  ++    E 
Sbjct: 108 NFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167

Query: 508 EDSDYDEEVEV 518
           +     ++  +
Sbjct: 168 DGHIRAQQACI 178

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 5/63 (7%), Positives = 19/63 (30%), Gaps = 2/63 (3%)

Query: 1   MHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIET 59
           +             +         I+    G  + ++ S    ++V   ++  +  ++  
Sbjct: 226 VSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284

Query: 60  GHS 62
           G +
Sbjct: 285 GKN 287

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 33/272 (12%), Positives = 82/272 (30%), Gaps = 31/272 (11%)

Query: 35  ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 94
           I+ S+  +I+V   +S K+  +I  G  +N       P+ + ++ V+ A   +V + + +
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGT-KVYVANAHSNDVSIIDTA 62

Query: 95  ---RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 151
                +      +    +         V  +A    +     S +  GT++      G +
Sbjct: 63  TNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLA 122

Query: 152 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 211
             P G       N    +      + A     ++      I+ T     +   +     +
Sbjct: 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSI 182

Query: 212 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL-------------------- 251
                +        ++   P      P     +  +                        
Sbjct: 183 SVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV 242

Query: 252 ----THVTFSPNGEEVLLSYSGEH-VYLMDVN 278
                 +  +P+G++V ++ S  + V ++D  
Sbjct: 243 GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTA 274

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 7/61 (11%), Positives = 22/61 (36%)

Query: 17  GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD 76
                  +++ ++ GS +  G     +  +   + +    ++   +A++        T D
Sbjct: 277 PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336

Query: 77  E 77
           E
Sbjct: 337 E 337

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	732
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.98
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.98
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.8
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.79
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.76
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.68
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.66
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.61
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.51
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.45
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.37
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.35
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.23
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.2
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.95
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.85
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.79
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.52
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.49
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.45
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.38
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.35
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.31
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.27
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.26
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.23
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.18
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.12
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.09
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.05
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.81
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.41
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.23
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.14
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.03
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.94
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.61
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.45
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.23
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.22
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.04
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.61
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.38
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.33
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.54
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	90.15
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	89.84
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	83.95
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	83.01
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	82.83
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	82.12

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.6e-40  Score=333.07  Aligned_cols=196  Identities=17%  Similarity=0.296  Sum_probs=165.1

Q ss_pred             hhhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004745            4 SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA   83 (732)
Q Consensus         4 ~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~   83 (732)
                      +|..+.....+|+||.++|++++|+|++++||||+.||+|+|||+.+++.+..+ .+|...|.+++|+|+  +.+++++.
T Consensus         2 ~w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-~~h~~~V~~~~~~~~--~~~~~~~~   78 (317)
T d1vyhc1           2 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS--GKLLASCS   78 (317)
T ss_dssp             CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT--SSEEEEEE
T ss_pred             ccCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCcEEEEeeecc--cccccccc
Confidence            456677788899999999999999999999999999999999999999999999 799999999999999  59999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                      .++.+.+|+.....          ....+.+|...+.++.++|++ +.+++++.|+.+++||+++++..           
T Consensus        79 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~-----------  136 (317)
T d1vyhc1          79 ADMTIKLWDFQGFE----------CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV-----------  136 (317)
T ss_dssp             TTSCCCEEETTSSC----------EEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE-----------
T ss_pred             cccccccccccccc----------cccccccccccceeeeccCCC-ceEEeeccCcceeEeecccceee-----------
Confidence            99999999988532          256677899999999999955 88999999999999999887621           


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                                    .....+...+.+++|+|+ +.+|++++.|+.|++|++.+.+.+..+                    
T Consensus       137 --------------~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~--------------------  181 (317)
T d1vyhc1         137 --------------KTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAEL--------------------  181 (317)
T ss_dssp             --------------EEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEE--------------------
T ss_pred             --------------eEEccCCCcceeeecccC-CCEEEEEeCCCeEEEEeeccceeeEEE--------------------
Confidence                          112235567899999998 789999999999999999987654433                    


Q ss_pred             CCCccccEEEEEEcCCC
Q 004745          244 HGRSSLHLTHVTFSPNG  260 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g  260 (732)
                      .++.. .+.++.|+|++
T Consensus       182 ~~~~~-~i~~~~~~~~~  197 (317)
T d1vyhc1         182 REHRH-VVECISWAPES  197 (317)
T ss_dssp             CCCSS-CEEEEEECCSC
T ss_pred             ecCCC-CceEEEEeecc
Confidence            33333 47888887754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-39  Score=331.60  Aligned_cols=213  Identities=20%  Similarity=0.268  Sum_probs=174.1

Q ss_pred             hhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE---EE-EccCCCcCeEEEEEecCCCCCEEEE
Q 004745            6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL---HS-IETGHSANVFCTKFVPETSDELVVS   81 (732)
Q Consensus         6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~---~~-~~~~h~~~V~~~~~s~~~~g~~l~s   81 (732)
                      .++.+.++++ +|...|++++|+|+|++||||+ ||.|+|||+.++...   .. ...+|.+.|.+++|+|+  |++|++
T Consensus        39 p~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d--g~~l~s  114 (337)
T d1gxra_          39 PRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIV  114 (337)
T ss_dssp             CSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEE
T ss_pred             CCCceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC--CCEEEE
Confidence            3455677777 7999999999999999999987 899999999765321   11 22579999999999999  599999


Q ss_pred             EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004745           82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      |+.||+|++||+......        ....+..|...+..+.|+|+ +.++++++.|+.|++|++.+++.          
T Consensus       115 ~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~~~~~~~~----------  175 (337)
T d1gxra_         115 GGEASTLSIWDLAAPTPR--------IKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTL----------  175 (337)
T ss_dssp             EESSSEEEEEECCCC--E--------EEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEE----------
T ss_pred             eecccccccccccccccc--------cccccccccccccccccccc-ccccccccccccccccccccccc----------
Confidence            999999999999864432        25677889999999999995 48999999999999999987652          


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                                     ......|...|.+++|+++ +..+++++.|+.|++||+++.+.+..+                  
T Consensus       176 ---------------~~~~~~~~~~v~~l~~s~~-~~~~~~~~~d~~v~i~d~~~~~~~~~~------------------  221 (337)
T d1gxra_         176 ---------------VRQFQGHTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQLQQH------------------  221 (337)
T ss_dssp             ---------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE------------------
T ss_pred             ---------------ccccccccccccccccccc-ccccccccccccccccccccceeeccc------------------
Confidence                           1112345668999999998 789999999999999999987644332                  


Q ss_pred             ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                         .+.. .|.+++|+|++++|++++.|+.|++||+.+
T Consensus       222 ---~~~~-~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~  255 (337)
T d1gxra_         222 ---DFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             ---ECSS-CEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             ---cccc-ceEEEEEcccccccceeccccccccccccc
Confidence               1223 599999999999999999999999999876

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-38  Score=333.07  Aligned_cols=209  Identities=19%  Similarity=0.300  Sum_probs=166.1

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc-----------------cCCCcCeEEEEEecCCCCCEE
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-----------------TGHSANVFCTKFVPETSDELV   79 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~-----------------~~h~~~V~~~~~s~~~~g~~l   79 (732)
                      +|++.|+|++|+|||++||+|+ |++|+|||+.+++.+..+.                 ..|...|++++|+|+  |++|
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--~~~l  136 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GKFL  136 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT--SSEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC--CCcc
Confidence            6999999999999999999986 8999999999988877662                 246777999999999  5999


Q ss_pred             EEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004745           80 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH  159 (732)
Q Consensus        80 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  159 (732)
                      ++|+.||.|++||....          ..+..+.+|...|.++.++++ +..+++++.++.+++||+.+....       
T Consensus       137 ~s~~~dg~v~i~~~~~~----------~~~~~~~~h~~~v~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~-------  198 (388)
T d1erja_         137 ATGAEDRLIRIWDIENR----------KIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCS-------  198 (388)
T ss_dssp             EEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEE-------
T ss_pred             eeccccccccccccccc----------ccccccccccccccccccccc-cccccccccceeeeeeeccccccc-------
Confidence            99999999999999864          236778889999999999995 488899999999999999876421       


Q ss_pred             cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccc
Q 004745          160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  239 (732)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (732)
                             ..           . .+.....++.+.+.++.+|++|+.|+.|++||.++...+..+...             
T Consensus       199 -------~~-----------~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-------------  246 (388)
T d1erja_         199 -------LT-----------L-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE-------------  246 (388)
T ss_dssp             -------EE-----------E-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------------
T ss_pred             -------cc-----------c-ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccc-------------
Confidence                   00           0 112244566677665899999999999999999987655443211             


Q ss_pred             ccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          240 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       240 ~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .....+|.. .|++++|+|++++|++++.||.|++||+.+
T Consensus       247 ~~~~~~h~~-~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~  285 (388)
T d1erja_         247 NESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  285 (388)
T ss_dssp             ----CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cccccCCCC-CEEEEEECCCCCEEEEEECCCcEEEEeccC
Confidence            111134555 699999999999999999999999999987

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-37  Score=319.51  Aligned_cols=213  Identities=23%  Similarity=0.336  Sum_probs=175.3

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      ++..++|+||.++|++++|+|++++||||+.||+|+|||+.+++.+..+ ..|...|.+++|+|+  +.++++|+.|+.+
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~v~~~~~--~~~l~~~~~d~~i  121 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPS--GNYVACGGLDNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE-ECSCSCEEEEEECTT--SSEEEEEETTCCE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEE-ecccccEEeeEeecc--ceeeeeeccccee
Confidence            4677899999999999999999999999999999999999999999998 799999999999999  5999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      ++|+........      .....+.+|........... + ..+.....+.....+........                
T Consensus       122 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~----------------  177 (340)
T d1tbga_         122 SIYNLKTREGNV------RVSRELAGHTGYLSCCRFLD-D-NQIVTSSGDTTCALWDIETGQQT----------------  177 (340)
T ss_dssp             EEEESSSSCSCC------CEEEEECCCSSCEEEEEEEE-T-TEEEEEETTTEEEEEETTTTEEE----------------
T ss_pred             eccccccccccc------ccceeccccccccccccccc-c-ccccccccccccccccccccccc----------------
Confidence            999987643221      33556777887777766665 3 57778888999999987665411                


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                               .....+...+....+.+. ..++++|+.|+.|++||+++.+.+..+                    .+|..
T Consensus       178 ---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~v~i~d~~~~~~~~~~--------------------~~h~~  227 (340)
T d1tbga_         178 ---------TTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTF--------------------TGHES  227 (340)
T ss_dssp             ---------EEEECCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEE--------------------CCCSS
T ss_pred             ---------ccccccceeEeeeccccc-cceeEEeecCceEEEEECCCCcEEEEE--------------------eCCCC
Confidence                     111123346788888887 789999999999999999987655443                    44555


Q ss_pred             ccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                       .|++++|+|++++|++++.||.|++|++..
T Consensus       228 -~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~  257 (340)
T d1tbga_         228 -DINAICFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             -CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             -CeEEEEECCCCCEEEEEeCCCeEEEEeecc
Confidence             599999999999999999999999999877

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.4e-37  Score=310.68  Aligned_cols=205  Identities=15%  Similarity=0.188  Sum_probs=169.9

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF   96 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~   96 (732)
                      .+.+.+.+++++|+|+.||.++ ++.|.+||+.+++....+ .+|...|++++|+|+  |++|++|+.||+|+|||+...
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~-~~H~~~v~~~~~sp~--g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPS--GYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEEEESSST
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEE-cCCCCCEEEEEEeCC--CCeEeccccCceEeeeeeecc
Confidence            3456677899999999999886 567999999999888888 799999999999999  599999999999999999874


Q ss_pred             CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004745           97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  174 (732)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (732)
                      ..        .....+.+|...|.+++|+|++ ++|++++.  +..+++|++.+++.                       
T Consensus        91 ~~--------~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~~-----------------------  138 (311)
T d1nr0a1          91 TH--------ILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTS-----------------------  138 (311)
T ss_dssp             TC--------CEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCB-----------------------
T ss_pred             cc--------ccccccccccCccccccccccc-cccccccccccccccccccccccc-----------------------
Confidence            32        1235678899999999999955 78888875  45699999987762                       


Q ss_pred             ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004745          175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  254 (732)
Q Consensus       175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  254 (732)
                        ......|...|.+++|+|++...|++|+.|+.|++||+++.+....+                    .+|.. +|+++
T Consensus       139 --~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~--------------------~~~~~-~i~~v  195 (311)
T d1nr0a1         139 --NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF--------------------GEHTK-FVHSV  195 (311)
T ss_dssp             --CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE--------------------CCCSS-CEEEE
T ss_pred             --cccccccccccccccccccceeeeccccccccccccccccccccccc--------------------ccccc-ccccc
Confidence              22334567789999999996557899999999999999986544332                    34444 59999


Q ss_pred             EEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          255 TFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       255 ~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      .|+|++++|++++.|+.|++||+.++
T Consensus       196 ~~~p~~~~l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         196 RYNPDGSLFASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ccCccccccccccccccccccccccc
Confidence            99999999999999999999998873

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-36  Score=312.90  Aligned_cols=229  Identities=18%  Similarity=0.290  Sum_probs=158.7

Q ss_pred             cEeeeccCCce-eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004745           12 ERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL   90 (732)
Q Consensus        12 ~~~l~~h~~~V-~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v   90 (732)
                      ..+|+||.+.| +|++|  ++++||||+.||+|+|||+.+++++..+ .+|.+.|++++|+|+   .+|++|+.|++|++
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l-~~H~~~V~~l~~s~~---~~l~s~s~D~~i~i   78 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG---GILVSGSTDRTVRV   78 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEEETT---TEEEEEETTCCEEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEE-ECCCCCEEEEEEcCC---CEEEEEeccccccc
Confidence            56799999886 56655  5789999999999999999999999999 799999999999986   68999999999999


Q ss_pred             EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004745           91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  170 (732)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  170 (732)
                      |++.......        ......+........+.+ ++.++++++.|+.|++||+.+..............  ......
T Consensus        79 w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~  147 (355)
T d1nexb2          79 WDIKKGCCTH--------VFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP--LVFHTP  147 (355)
T ss_dssp             EETTTTEEEE--------EECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCC--EEESCT
T ss_pred             cccccccccc--------cccccccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceec--cceecc
Confidence            9998643211        112222333445566677 45889999999999999998876432211111110  011101


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  250 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (732)
                      ............+...+....  ++ +++++++..|+.|++||+++.+.+...                    .++.. .
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~--~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~--------------------~~~~~-~  203 (355)
T d1nexb2         148 EENPYFVGVLRGHMASVRTVS--GH-GNIVVSGSYDNTLIVWDVAQMKCLYIL--------------------SGHTD-R  203 (355)
T ss_dssp             TTCTTEEEEEECCSSCEEEEE--EE-TTEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS-C
T ss_pred             ccccceeeeeeeccccccccc--cc-cceeeeecccceeeeeecccccceeee--------------------ecccc-c
Confidence            111111111122333444433  33 679999999999999999887544332                    22333 4


Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          251 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       251 i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      +.++.|+|+++++++++.|+.|++||+.++.
T Consensus       204 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  234 (355)
T d1nexb2         204 IYSTIYDHERKRCISASMDTTIRIWDLENGE  234 (355)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETTTCC
T ss_pred             cccccccccceeeecccccceEEeeeccccc
Confidence            8899999999999999999999999998854

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-36  Score=304.74  Aligned_cols=209  Identities=17%  Similarity=0.187  Sum_probs=164.8

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      ++..+++.||.++|++++|+|||++||||+.||+|++||+.+++.+..+...|...|++++|+|+  |. +++++.|+.+
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~--g~-~~~~~~d~~v   78 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK--GD-LFTVSWDDHL   78 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT--SC-EEEEETTTEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc--ce-eecccceeeE
Confidence            35678999999999999999999999999999999999999999998886689999999999998  34 6677889999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      ++|+........       .......+...+.+++|+|++ .++++++ ++.+++|+......                 
T Consensus        79 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~~g-~~~~~~~-~~~i~~~~~~~~~~-----------------  132 (299)
T d1nr0a2          79 KVVPAGGSGVDS-------SKAVANKLSSQPLGLAVSADG-DIAVAAC-YKHIAIYSHGKLTE-----------------  132 (299)
T ss_dssp             EEECSSSSSSCT-------TSCCEEECSSCEEEEEECTTS-SCEEEEE-SSEEEEEETTEEEE-----------------
T ss_pred             EEeccCCccccc-------ccccccccccccccccccccc-ccccccc-cccccccccccccc-----------------
Confidence            999987532211       123345577889999999955 6665554 57899998543210                 


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                      .            .....+.+++|+|+ +++|++|+.|+.|++||+++.+.....                   ...|..
T Consensus       133 ~------------~~~~~~~~~~~s~~-~~~l~~g~~dg~i~~~d~~~~~~~~~~-------------------~~~~~~  180 (299)
T d1nr0a2         133 V------------PISYNSSCVALSND-KQFVAVGGQDSKVHVYKLSGASVSEVK-------------------TIVHPA  180 (299)
T ss_dssp             E------------ECSSCEEEEEECTT-SCEEEEEETTSEEEEEEEETTEEEEEE-------------------EEECSS
T ss_pred             c------------cccccccccccccc-ccccccccccccccccccccccccccc-------------------cccccc
Confidence            0            01225688999998 789999999999999999865321110                   022333


Q ss_pred             ccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                       +|++++|+|++++|++++.|+.|++||+.+
T Consensus       181 -~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         181 -EITSVAFSNNGAFLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             -CEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             -cccccccccccccccccccccccccccccc
Confidence             599999999999999999999999999876

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-35  Score=308.56  Aligned_cols=225  Identities=15%  Similarity=0.171  Sum_probs=172.7

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR   95 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~   95 (732)
                      +.++|+|++|+|||++||+|+.|+.|+|||+.+++  ++..+ .+|.++|.+++|+|+  +++|++|+.|++|+|||+..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l-~gH~~~V~~l~fsp~--~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETT--TTEEEEEETTSCEEEEEEET
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEe-cCCCCCEEEEEECCC--CCEEEEEECCCeEEEEeecc
Confidence            35899999999999999999999999999998775  55666 799999999999999  58999999999999999986


Q ss_pred             CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004745           96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  175 (732)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (732)
                      ...        .+...+.+|...|++++|+|++ +.|++++.|+.|++|++......                     ..
T Consensus        83 ~~~--------~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~---------------------~~  132 (371)
T d1k8kc_          83 RTW--------KPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDW---------------------WV  132 (371)
T ss_dssp             TEE--------EEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTE---------------------EE
T ss_pred             ccc--------cccccccccccccccccccccc-ccceeecccCcceeeeeeccccc---------------------cc
Confidence            432        2245667889999999999954 89999999999999998765421                     00


Q ss_pred             cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEE
Q 004745          176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  255 (732)
Q Consensus       176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  255 (732)
                      .......+...|.+++|+|+ +.+|++|+.|+.|++||+.................  ..+........+|.. .|++++
T Consensus       133 ~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~v~~~~  208 (371)
T d1k8kc_         133 CKHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK--MPFGELMFESSSSCG-WVHGVC  208 (371)
T ss_dssp             EEEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSC--CCTTCEEEECCCCSS-CEEEEE
T ss_pred             cccccccccccccccccccc-ccceeccccCcEEEEEeeccCcccccccccccccc--ccceeeeeeccCccC-cEEEEE
Confidence            11123346668999999998 78999999999999999876543222111000000  000000111134444 599999


Q ss_pred             EcCCCCEEEEEecCCeEEEEECCC
Q 004745          256 FSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       256 ~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      |+|+|++|++++.|+.|++||+.+
T Consensus       209 ~s~~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         209 FSANGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             ECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             eecccccccccccCCcceEEeeec
Confidence            999999999999999999999876

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=297.04  Aligned_cols=205  Identities=22%  Similarity=0.352  Sum_probs=152.6

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      .++++.++|+||++.|.+ +++++|++||||+.||+|+|||+.+++++..+ .+|...|.+++|+|+    +|++|+.|+
T Consensus         4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~V~~v~~~~~----~l~s~s~D~   77 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRDN----IIISGSTDR   77 (342)
T ss_dssp             SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEETT----EEEEEETTS
T ss_pred             CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCCEEEEEeCCC----ccccceecc
Confidence            456788999999999865 46668999999999999999999999999998 799999999999874    899999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      .+++|+......          ......+...+......+   ..++.+..|+.+.+|+..+++..            ..
T Consensus        78 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~~~------------~~  132 (342)
T d2ovrb2          78 TLKVWNAETGEC----------IHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL------------HV  132 (342)
T ss_dssp             CEEEEETTTTEE----------EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE------------EE
T ss_pred             cccccccccccc----------eecccccceeEeeeeccc---ccccccccceeEEEeecccccce------------ee
Confidence            999999885321          333444455555555543   67788999999999999887621            00


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                      +.             .......  .+.+. ...+++++.|+.|++||++....+..+                    .+|
T Consensus       133 ~~-------------~~~~~~~--~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~--------------------~~~  176 (342)
T d2ovrb2         133 LM-------------GHVAAVR--CVQYD-GRRVVSGAYDFMVKVWDPETETCLHTL--------------------QGH  176 (342)
T ss_dssp             EE-------------CCSSCEE--EEEEC-SSCEEEEETTSCEEEEEGGGTEEEEEE--------------------CCC
T ss_pred             ee-------------cccccce--eeccc-cceeeeecCCCeEEEeecccceeeEEE--------------------cCc
Confidence            00             0011111  22233 458899999999999999876543332                    334


Q ss_pred             ccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      ..   ....+++++.+|++++.||.|++||+..++
T Consensus       177 ~~---~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~  208 (342)
T d2ovrb2         177 TN---RVYSLQFDGIHVVSGSLDTSIRVWDVETGN  208 (342)
T ss_dssp             SS---CEEEEEECSSEEEEEETTSCEEEEETTTCC
T ss_pred             cc---ccccccCCCCEEEEEeCCCeEEEeecccce
Confidence            32   234556688999999999999999998753

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.8e-34  Score=287.82  Aligned_cols=175  Identities=15%  Similarity=0.198  Sum_probs=144.4

Q ss_pred             EEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEE
Q 004745           45 VWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV  124 (732)
Q Consensus        45 vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  124 (732)
                      .|... ......+ .+|.++|++++|+|+  +++|+||+.||+|+|||+.++          .++..+.+|...|.+++|
T Consensus         2 ~w~p~-~~~~~~L-~GH~~~I~~l~~sp~--~~~l~s~s~Dg~i~iWd~~~~----------~~~~~~~~h~~~V~~~~~   67 (317)
T d1vyhc1           2 EWIPR-PPEKYAL-SGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETG----------DFERTLKGHTDSVQDISF   67 (317)
T ss_dssp             CCCCC-SSCSCEE-ECCSSCEEEEEECSS--SSEEEEEESSSCEEEEETTTC----------CCCEEECCCSSCEEEEEE
T ss_pred             ccCCC-CCccEEE-cCCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC----------CEEEEEeCCCCcEEEEee
Confidence            35433 3334566 799999999999998  589999999999999999864          337888999999999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe
Q 004745          125 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG  204 (732)
Q Consensus       125 ~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~  204 (732)
                      +|++ .++++++.++.+.+|+....+.                         ......+...+.++.|+|+ +..+++++
T Consensus        68 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~  120 (317)
T d1vyhc1          68 DHSG-KLLASCSADMTIKLWDFQGFEC-------------------------IRTMHGHDHNVSSVSIMPN-GDHIVSAS  120 (317)
T ss_dssp             CTTS-SEEEEEETTSCCCEEETTSSCE-------------------------EECCCCCSSCEEEEEECSS-SSEEEEEE
T ss_pred             eccc-cccccccccccccccccccccc-------------------------ccccccccccceeeeccCC-CceEEeec
Confidence            9954 8999999999999999877652                         2223446668899999998 78999999


Q ss_pred             CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004745          205 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  281 (732)
Q Consensus       205 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~  281 (732)
                      .|+.+++||+++.+.+..+                    .+|.. .+.+++|+|++++|++++.|+.|++|++.+..
T Consensus       121 ~d~~~~~~~~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~  176 (317)
T d1vyhc1         121 RDKTIKMWEVQTGYCVKTF--------------------TGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKE  176 (317)
T ss_dssp             TTSEEEEEETTTCCEEEEE--------------------ECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             cCcceeEeecccceeeeEE--------------------ccCCC-cceeeecccCCCEEEEEeCCCeEEEEeeccce
Confidence            9999999999987654433                    33444 58999999999999999999999999998854

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-32  Score=277.14  Aligned_cols=221  Identities=14%  Similarity=0.152  Sum_probs=183.7

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE--EEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~--~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      ...+..+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++..  ..+ ..|..+|.+++|+|+  +++|++++.
T Consensus        46 ~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~d--~~~l~~~~~  122 (311)
T d1nr0a1          46 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSE--SKRIAAVGE  122 (311)
T ss_dssp             TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTT--SCEEEEEEC
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccc-ccccCcccccccccc--ccccccccc
Confidence            456788889999999999999999999999999999999999887644  334 689999999999999  588998886


Q ss_pred             --CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004745           85 --DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  162 (732)
Q Consensus        85 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  162 (732)
                        +..++||++++..          +...+.+|...|++++|+|++..+|++|+.|+.|++||+++.+.           
T Consensus       123 ~~~~~~~v~~~~~~~----------~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-----------  181 (311)
T d1nr0a1         123 GRERFGHVFLFDTGT----------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-----------  181 (311)
T ss_dssp             CSSCSEEEEETTTCC----------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-----------
T ss_pred             ccccccccccccccc----------ccccccccccccccccccccceeeeccccccccccccccccccc-----------
Confidence              4569999998642          35678899999999999998766799999999999999987652           


Q ss_pred             ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004745          163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  242 (732)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (732)
                                    ......|...|.++.|+|+ +++|++++.|+.|++||+++...+..+..             ....
T Consensus       182 --------------~~~~~~~~~~i~~v~~~p~-~~~l~~~~~d~~v~~~d~~~~~~~~~~~~-------------~~~~  233 (311)
T d1nr0a1         182 --------------KSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFED-------------DSLK  233 (311)
T ss_dssp             --------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBC-------------TTSS
T ss_pred             --------------ccccccccccccccccCcc-ccccccccccccccccccccccccccccc-------------cccc
Confidence                          1222346668999999998 78999999999999999998765544321             1112


Q ss_pred             cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       243 ~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      ..+|.. +|++++|+|++++|++|+.||.|+|||++++
T Consensus       234 ~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         234 NVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             SCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccccc-cccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            245665 6999999999999999999999999999874

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.2e-32  Score=274.96  Aligned_cols=213  Identities=16%  Similarity=0.247  Sum_probs=155.8

Q ss_pred             CceeEEEEcCCCCEEEEEeCCC-cEEEEeCCCC--eeEEEEccCC-CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004745           20 GCVNAISWNSKGSLLISGSDDT-HINVWSYSSR--KLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR   95 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~dg-~i~vWd~~~~--~~~~~~~~~h-~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~   95 (732)
                      ..+++++|+|+|+.||.++.+. .|+.||....  ..+..+ .+| ...|++++|+|..+|.+|++|+.||+|+|||+..
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~-~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEE-eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            3567899999999999887553 3566765443  345566 566 5689999999976578999999999999999975


Q ss_pred             CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe--CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745           96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                      ......  ........+..|..+|.+++|++++ .++++++  .++.+++|+..+++.                      
T Consensus        97 ~~~~~~--~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~~~~~~~~----------------------  151 (325)
T d1pgua1          97 DKESNS--VEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSGNS----------------------  151 (325)
T ss_dssp             EGGGTE--EEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTCCE----------------------
T ss_pred             Ccceee--eecccccccccccCcEEEEEECCCC-CccceeeccccceEEEEeeccccc----------------------
Confidence            322110  0001112345688899999999965 6666655  467899999987652                      


Q ss_pred             cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004745          174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  253 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (732)
                         +....+|...|.+++|+|++..++++++.|+.|++||+...+.......                 ..+|.. .|++
T Consensus       152 ---~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~-----------------~~~~~~-~v~~  210 (325)
T d1pgua1         152 ---LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT-----------------HHKQGS-FVRD  210 (325)
T ss_dssp             ---EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS-----------------SSCTTC-CEEE
T ss_pred             ---ceeeeecccccccccccccccceEEEeecccccccccccccccceeccc-----------------ccCCCC-ccEE
Confidence               2223456778999999999666788999999999999876543322210                 023434 5999


Q ss_pred             EEEcCC-CCEEEEEecCCeEEEEECCC
Q 004745          254 VTFSPN-GEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       254 l~~sp~-g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ++|+|+ +.+|++++.||.|++||+++
T Consensus       211 v~~~pd~~~~l~s~~~d~~i~iwd~~~  237 (325)
T d1pgua1         211 VEFSPDSGEFVITVGSDRKISCFDGKS  237 (325)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred             eeeccccceeccccccccceeeeeecc
Confidence            999996 68899999999999999877

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-32  Score=281.14  Aligned_cols=201  Identities=11%  Similarity=0.099  Sum_probs=145.5

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCC
Q 004745           23 NAISWNSKGSLLISGSDDTHINVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  101 (732)
Q Consensus        23 ~~l~~s~dg~~lasg~~dg~i~vWd-~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~  101 (732)
                      ..+..+++|+..........+..=. ....+.+..+  .|...|.+++|+|+  |++|++|+ ||.|+|||+........
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~H~~~V~~v~fs~~--g~~latg~-dg~V~iWd~~~~~~~~~   87 (337)
T d1gxra_          13 YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL--NHGEVVCAVTISNP--TRHVYTGG-KGCVKVWDISHPGNKSP   87 (337)
T ss_dssp             CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEE--CCSSCCCEEEECSS--SSEEEEEC-BSEEEEEETTSTTCCSC
T ss_pred             ccccCCCCCCEEeeccCCcceecCCCCCCceEEEEC--CCCCcEEEEEECCC--CCEEEEEE-CCEEEEEEccCCcccce
Confidence            3455666665444332222111000 1223455555  79999999999999  59999987 89999999986533211


Q ss_pred             CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004745          102 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  181 (732)
Q Consensus       102 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (732)
                           .......+|...|.+++|+|++ ++|++++.||.|++||+......                       ......
T Consensus        88 -----~~~~~~~~h~~~I~~v~~s~dg-~~l~s~~~dg~i~iwd~~~~~~~-----------------------~~~~~~  138 (337)
T d1gxra_          88 -----VSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPR-----------------------IKAELT  138 (337)
T ss_dssp             -----SEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--E-----------------------EEEEEE
T ss_pred             -----eEEeeecCCCCcEEEEEEcCCC-CEEEEeecccccccccccccccc-----------------------cccccc
Confidence                 1223445789999999999955 89999999999999998765411                       111223


Q ss_pred             CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC
Q 004745          182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  261 (732)
Q Consensus       182 ~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~  261 (732)
                      .|...+..+.|+|+ +.++++++.|+.|++||+.+.+.....                    .+|.. .|++++|++++.
T Consensus       139 ~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~~~~~~~~~~~~--------------------~~~~~-~v~~l~~s~~~~  196 (337)
T d1gxra_         139 SSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVRQF--------------------QGHTD-GASCIDISNDGT  196 (337)
T ss_dssp             CSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEEECTTSS
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccc--------------------ccccc-cccccccccccc
Confidence            45568899999998 789999999999999999876543322                    33444 599999999999


Q ss_pred             EEEEEecCCeEEEEECCC
Q 004745          262 EVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       262 ~l~~~~~dg~v~iwd~~~  279 (732)
                      .+++++.|+.|++||+++
T Consensus       197 ~~~~~~~d~~v~i~d~~~  214 (337)
T d1gxra_         197 KLWTGGLDNTVRSWDLRE  214 (337)
T ss_dssp             EEEEEETTSEEEEEETTT
T ss_pred             cccccccccccccccccc
Confidence            999999999999999877

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-31  Score=280.32  Aligned_cols=242  Identities=15%  Similarity=0.127  Sum_probs=155.3

Q ss_pred             ccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee------EEEEccCCCcCeEEEEE------ecCCCCCE
Q 004745           11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------LHSIETGHSANVFCTKF------VPETSDEL   78 (732)
Q Consensus        11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~------~~~~~~~h~~~V~~~~~------s~~~~g~~   78 (732)
                      .....++|.+.|+++++++  ++|+|++.|++|+|||..+.+.      .... ..|...+..+..      .+.. +.+
T Consensus         6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~   81 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFE-LCL   81 (393)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEE-EEE
T ss_pred             eeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEee-eeccCCceEeeeEeeeccCCCC-CcE
Confidence            4466789999999999875  6899999999999999765431      1122 244444333322      1111 247


Q ss_pred             EEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC----CcEEEEEeCCCcEEEEECCCCCCCCC
Q 004745           79 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN----PHVVWSASEDGTLRQHDFRQGSSCPP  154 (732)
Q Consensus        79 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~----~~~l~s~s~dg~i~vwd~~~~~~~~~  154 (732)
                      +++++.||.|++|++.....................+...+..++|.++.    .+++++++.||.+++|++........
T Consensus        82 ~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~  161 (393)
T d1sq9a_          82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  161 (393)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence            88999999999999875432211000000011122355667788887743    36889999999999999865432111


Q ss_pred             CCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccc
Q 004745          155 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  234 (732)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  234 (732)
                      ....+......+       .........+...+.+++|+|+ + +|++|+.|++|+|||+.+.+++..+...       .
T Consensus       162 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~s~d-g-~lasgs~Dg~i~iwd~~~~~~~~~~~~~-------~  225 (393)
T d1sq9a_         162 SLTLNWSPTLEL-------QGTVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYNFESQ-------H  225 (393)
T ss_dssp             HTTTCCCCEEEE-------EEEECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEEEECC-------C
T ss_pred             eeeeeeccceec-------ccceecccCCCCcEEEEEECCC-C-EEEEEeCCCcEEEEeecccccccccccc-------c
Confidence            111111100000       0112223334556889999998 4 8999999999999999987655443211       0


Q ss_pred             cccccccccCCCccccEEEEEEcCCCCEEEEEecCC---eEEEEECCCC
Q 004745          235 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHA  280 (732)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg---~v~iwd~~~~  280 (732)
                      .+       .+|.. +|++++|+|+|++|++|+.|+   .|++||++++
T Consensus       226 ~l-------~~h~~-~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g  266 (393)
T d1sq9a_         226 SM-------INNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  266 (393)
T ss_dssp             ----------CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             cc-------ccccc-eEEEcccccccceeeeecCCCCcceeeecccccc
Confidence            10       44555 699999999999999999987   4899999884

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-32  Score=270.91  Aligned_cols=190  Identities=16%  Similarity=0.143  Sum_probs=140.8

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      .+++++|+||.++|++++|+|    |+||+.||+|++||+.++.      .+|...|.++.|+++   ..+++++.|++|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~------~~h~~~V~~~~~~~~---~~~~s~s~D~~v   69 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH------QDHSNLIVSLDNSKA---QEYSSISWDDTL   69 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE------CCCCSCEEEEECCST---TCCEEEETTTEE
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC------CCCCCCEEEEEecCC---CeEEEEeecccc
Confidence            478999999999999999997    9999999999999987642      589999999999986   578999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      ++|++...              .   ....+..+.+.+++ ..+++ +.++.+.+|+..+++..            ..+.
T Consensus        70 ~~w~~~~~--------------~---~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~------------~~~~  118 (287)
T d1pgua2          70 KVNGITKH--------------E---FGSQPKVASANNDG-FTAVL-TNDDDLLILQSFTGDII------------KSVR  118 (287)
T ss_dssp             EETTEEEE--------------E---CSSCEEEEEECSSS-EEEEE-ETTSEEEEEETTTCCEE------------EEEE
T ss_pred             cccccccc--------------c---cccceeeeeeccCC-ceEEE-eecccceeeeccceeee------------eecc
Confidence            99988731              1   23456778888743 55544 55667889998776521            0000


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                                    ....+  .+++++ +..+++++.+ +.|++|++...+....+.                   ..+.
T Consensus       119 --------------~~~~~--~~~~~~-~~~~~v~~~~~~~v~~~~~~~~~~~~~~~-------------------~~~~  162 (287)
T d1pgua2         119 --------------LNSPG--SAVSLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDLK-------------------TPLR  162 (287)
T ss_dssp             --------------CSSCE--EEEEEC-SSEEEEEETTTSCEEEEETTEEEEEEECS-------------------SCCS
T ss_pred             --------------cccee--eeeecc-Ccceeeeccccceeeeeeccccceeeeee-------------------eccC
Confidence                          11123  345555 5577777766 479999987543221110                   1122


Q ss_pred             cccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      . .+++++|+|++++|++++.||.|++||+.+
T Consensus       163 ~-~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~  193 (287)
T d1pgua2         163 A-KPSYISISPSETYIAAGDVMGKILLYDLQS  193 (287)
T ss_dssp             S-CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             C-ceeEEEeccCccccccccccccccceeecc
Confidence            2 599999999999999999999999999987

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2e-30  Score=258.89  Aligned_cols=203  Identities=15%  Similarity=0.291  Sum_probs=153.4

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV   88 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i   88 (732)
                      ++.++...+|...|+|++|  ||++||||+.||+|+|||+.+++++..+ .+|.+.|++++|+    +++|++|+.|+.|
T Consensus         5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l-~~H~~~V~~v~~~----~~~l~s~s~D~~i   77 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQYD----ERVIITGSSDSTV   77 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEECC----SSEEEEEETTSCE
T ss_pred             EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEeeeecc----cceeecccccccc
Confidence            4566777889999998765  7899999999999999999999999999 7999999999884    3799999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004745           89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  168 (732)
Q Consensus        89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  168 (732)
                      ++|++.....          ......+....  ..+.+ ....++++..++.+++||.......                
T Consensus        78 ~~~~~~~~~~----------~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------------  128 (293)
T d1p22a2          78 RVWDVNTGEM----------LNTLIHHCEAV--LHLRF-NNGMMVTCSKDRSIAVWDMASPTDI----------------  128 (293)
T ss_dssp             EEEESSSCCE----------EEEECCCCSCE--EEEEC-CTTEEEEEETTSCEEEEECSSSSCC----------------
T ss_pred             cccccccccc----------ccccccccccc--ccccc-cccceeecccccceeEeeccccccc----------------
Confidence            9999986432          22333222222  23334 3367889999999999998876522                


Q ss_pred             ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004745          169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  248 (732)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (732)
                            ........+...+..+.+.+   ..+++++.|+.|++||+++.+.+..+                    .++..
T Consensus       129 ------~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~--------------------~~~~~  179 (293)
T d1p22a2         129 ------TLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTL--------------------NGHKR  179 (293)
T ss_dssp             ------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEE--------------------ECCSS
T ss_pred             ------cccccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEE--------------------ccccc
Confidence                  01112234555777777775   47889999999999999987655443                    23333


Q ss_pred             ccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                       .+..+.++  +.+|++++.||.|++||+++
T Consensus       180 -~v~~~~~~--~~~l~~~~~dg~i~i~d~~~  207 (293)
T d1p22a2         180 -GIACLQYR--DRLVVSGSSDNTIRLWDIEC  207 (293)
T ss_dssp             -CEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred             -ccccccCC--CCeEEEecCCCEEEEEeccc
Confidence             47666664  56899999999999999887

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1e-31  Score=281.22  Aligned_cols=194  Identities=15%  Similarity=0.174  Sum_probs=139.9

Q ss_pred             EEEEeCCCcEEEEeCCCCeeE----EEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCC--------
Q 004745           34 LISGSDDTHINVWSYSSRKLL----HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL--------  101 (732)
Q Consensus        34 lasg~~dg~i~vWd~~~~~~~----~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~--------  101 (732)
                      .+.+..++.+.+|+....+..    ... .+|.+.|+|++|+|+  |++|++|+ |++|+|||+.++.....        
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~H~~~V~~l~fs~d--g~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~  106 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKS-LDHTSVVCCVKFSND--GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN  106 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEE-EECSSCCCEEEECTT--SSEEEEEC-BSCEEEEETTTCCEEEEECC-----
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEee-CCCCCcEEEEEECCC--CCEEEEEe-CCeEEEEEecccceEeeeccccccc
Confidence            446777889999997655432    222 269999999999999  58999986 89999999986432100        


Q ss_pred             CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004745          102 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  181 (732)
Q Consensus       102 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (732)
                      .............|...|++++|+|+ +++|++|+.||.|++||...++.                         +....
T Consensus       107 ~~~~~~~~~~~~~~~~~V~~l~~s~~-~~~l~s~~~dg~v~i~~~~~~~~-------------------------~~~~~  160 (388)
T d1erja_         107 KDPENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKI-------------------------VMILQ  160 (388)
T ss_dssp             ------------CCCCBEEEEEECTT-SSEEEEEETTSCEEEEETTTTEE-------------------------EEEEC
T ss_pred             ccccccccccccCCCCCEEEEEECCC-CCcceeccccccccccccccccc-------------------------ccccc
Confidence            00000112233467888999999995 58999999999999999887652                         22233


Q ss_pred             CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc-CCC
Q 004745          182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS-PNG  260 (732)
Q Consensus       182 ~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-p~g  260 (732)
                      +|...|.++.++++ +..+++++.++.+++||.++.......                    ..+ . ...++.+. +++
T Consensus       161 ~h~~~v~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~--------------------~~~-~-~~~~~~~~~~~~  217 (388)
T d1erja_         161 GHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTL--------------------SIE-D-GVTTVAVSPGDG  217 (388)
T ss_dssp             CCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE--------------------ECS-S-CEEEEEECSTTC
T ss_pred             cccccccccccccc-cccccccccceeeeeeecccccccccc--------------------ccc-c-ccccccccCCCC
Confidence            56778999999998 789999999999999999876433221                    112 2 24455555 488


Q ss_pred             CEEEEEecCCeEEEEECCCC
Q 004745          261 EEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       261 ~~l~~~~~dg~v~iwd~~~~  280 (732)
                      ++|++++.||.|++|++.++
T Consensus       218 ~~l~~~~~d~~i~i~~~~~~  237 (388)
T d1erja_         218 KYIAAGSLDRAVRVWDSETG  237 (388)
T ss_dssp             CEEEEEETTSCEEEEETTTC
T ss_pred             CeEEEEcCCCeEEEeecccC
Confidence            99999999999999999873

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=3.6e-31  Score=275.31  Aligned_cols=167  Identities=8%  Similarity=0.044  Sum_probs=133.7

Q ss_pred             CCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc
Q 004745           61 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT  140 (732)
Q Consensus        61 h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  140 (732)
                      ...+|+|++|+|+  |.+|++|+.|+.|+|||+...+.        .++..+.+|...|++++|+|++ ++|++++.|+.
T Consensus         6 ~~~pIt~~~~s~d--g~~la~~~~~~~i~iw~~~~~~~--------~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~   74 (371)
T d1k8kc_           6 LVEPISCHAWNKD--RTQIAICPNNHEVHIYEKSGNKW--------VQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRN   74 (371)
T ss_dssp             CSSCCCEEEECTT--SSEEEEECSSSEEEEEEEETTEE--------EEEEEEECCSSCEEEEEEETTT-TEEEEEETTSC
T ss_pred             CCCCeEEEEECCC--CCEEEEEeCCCEEEEEECCCCCE--------EEEEEecCCCCCEEEEEECCCC-CEEEEEECCCe
Confidence            3478999999999  59999999999999999975332        3367889999999999999955 89999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCC
Q 004745          141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  220 (732)
Q Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~  220 (732)
                      |++||+.++...                       .......+...|.+++|+|+ ++.|++|+.|++|++|++......
T Consensus        75 i~vWd~~~~~~~-----------------------~~~~~~~~~~~v~~i~~~p~-~~~l~~~s~d~~i~i~~~~~~~~~  130 (371)
T d1k8kc_          75 AYVWTLKGRTWK-----------------------PTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQENDW  130 (371)
T ss_dssp             EEEEEEETTEEE-----------------------EEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTTTE
T ss_pred             EEEEeecccccc-----------------------cccccccccccccccccccc-cccceeecccCcceeeeeeccccc
Confidence            999999765411                       11223346668999999999 789999999999999998765432


Q ss_pred             cccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          221 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ....          .      ...+|.. .|.+++|+|++++|++|+.|+.|++|++..
T Consensus       131 ~~~~----------~------~~~~~~~-~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_         131 WVCK----------H------IKKPIRS-TVLSLDWHPNSVLLAAGSCDFKCRIFSAYI  172 (371)
T ss_dssp             EEEE----------E------ECTTCCS-CEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred             cccc----------c------ccccccc-ccccccccccccceeccccCcEEEEEeecc
Confidence            2110          0      0033444 599999999999999999999999999876

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=4.1e-31  Score=270.12  Aligned_cols=221  Identities=14%  Similarity=0.121  Sum_probs=155.0

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEE--ccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI--ETGHSANVFCTKFVPETSDELVVSGAGDA   86 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~--~~~h~~~V~~~~~s~~~~g~~l~s~~~dg   86 (732)
                      |++++.+++|.+.|++|+|+|++++||+|+.||+|+|||+.++.....+  ..+|..+|++++|+|++ +.+|++|+.|+
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~-~~~l~sg~~d~   79 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQG   79 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTS
T ss_pred             CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCC-CCEEEEccccc
Confidence            5778899999999999999999999999999999999998765432222  13799999999999975 57899999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCCceeeccccCce-eEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV-KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      .|++|++.....          ......+.... ....+.+ +...+++++.++.+++||++......          ..
T Consensus        80 ~v~~w~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~----------~~  138 (342)
T d1yfqa_          80 EILKVDLIGSPS----------FQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGV----------IA  138 (342)
T ss_dssp             CEEEECSSSSSS----------EEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBC----------EE
T ss_pred             ceeeeecccccc----------ccccccccccccccccccc-ccccccccccccccceeeccccccce----------ee
Confidence            999999986432          23333333333 3444444 56899999999999999987654220          00


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  245 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (732)
                      .....         ............+.+. +..+++++.|+.|++||++...........                 ..
T Consensus       139 ~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-----------------~~  191 (342)
T d1yfqa_         139 VKNLN---------SNNTKVKNKIFTMDTN-SSRLIVGMNNSQVQWFRLPLCEDDNGTIEE-----------------SG  191 (342)
T ss_dssp             EEESC---------SSSSSSCCCEEEEEEC-SSEEEEEESTTEEEEEESSCCTTCCCEEEE-----------------CS
T ss_pred             ecccc---------cccccceeeeeeeecc-CCceeeecCCCcEEEEecccCcccceeeee-----------------cc
Confidence            00000         0001112334455555 679999999999999999876543322110                 11


Q ss_pred             CccccEEEEEEc-CCCCEEEEEecCCeEEEEECCC
Q 004745          246 RSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       246 ~~~~~i~~l~~s-p~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ... .+.+..+. .++..+++++.||.+.+|++..
T Consensus       192 ~~~-~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~  225 (342)
T d1yfqa_         192 LKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             CSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             ccc-ceeeeEeecCCCCEEEeecCCCeEEEEEecC
Confidence            112 24555554 4678899999999999999876

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=3.8e-30  Score=258.82  Aligned_cols=165  Identities=11%  Similarity=0.126  Sum_probs=122.5

Q ss_pred             CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceee-ccccCceeEEEEecCCC
Q 004745           51 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNP  129 (732)
Q Consensus        51 ~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~  129 (732)
                      |+..+.+ .||..+|++++|+|+  |++|+||+.||+|++||+.++..          +..+ .+|...|++++|+|++ 
T Consensus         2 g~~~~~~-~GH~~~V~~l~~s~d--g~~l~s~s~Dg~v~vWd~~~~~~----------~~~~~~~h~~~v~~v~~~~~g-   67 (299)
T d1nr0a2           2 GSIDQVR-YGHNKAITALSSSAD--GKTLFSADAEGHINSWDISTGIS----------NRVFPDVHATMITGIKTTSKG-   67 (299)
T ss_dssp             TEEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCE----------EECSSCSCSSCEEEEEECTTS-
T ss_pred             CccceEc-CCCCCCcEEEEECCC--CCEEEEEcCCCeEEEEECCCCcE----------EEEEcCCCCCcEEEEEeeccc-
Confidence            4455556 899999999999999  59999999999999999986432          3444 4789999999999954 


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeE
Q 004745          130 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  209 (732)
Q Consensus       130 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v  209 (732)
                      + +++++.|+.+++|+.........                      ......+...+.+++|+|+ +.++++++ ++.+
T Consensus        68 ~-~~~~~~d~~v~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~s~~-g~~~~~~~-~~~i  122 (299)
T d1nr0a2          68 D-LFTVSWDDHLKVVPAGGSGVDSS----------------------KAVANKLSSQPLGLAVSAD-GDIAVAAC-YKHI  122 (299)
T ss_dssp             C-EEEEETTTEEEEECSSSSSSCTT----------------------SCCEEECSSCEEEEEECTT-SSCEEEEE-SSEE
T ss_pred             e-eecccceeeEEEeccCCcccccc----------------------ccccccccccccccccccc-cccccccc-cccc
Confidence            5 45677899999999876442100                      0001123446789999998 66665554 6789


Q ss_pred             EEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          210 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       210 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ++|+.......                         .....+++++|+|++++|++++.||.|++||+.+
T Consensus       123 ~~~~~~~~~~~-------------------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~  167 (299)
T d1nr0a2         123 AIYSHGKLTEV-------------------------PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG  167 (299)
T ss_dssp             EEEETTEEEEE-------------------------ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred             ccccccccccc-------------------------cccccccccccccccccccccccccccccccccc
Confidence            99986532110                         0011478899999999999999999999999876

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.3e-30  Score=265.22  Aligned_cols=179  Identities=18%  Similarity=0.199  Sum_probs=118.6

Q ss_pred             cCCCcCe-EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC
Q 004745           59 TGHSANV-FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE  137 (732)
Q Consensus        59 ~~h~~~V-~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  137 (732)
                      ++|...| +|++|+    |++|+||+.||+|+|||+.++          +++..+.+|...|++++|+| + ++|++++.
T Consensus         9 ~GH~~~vitc~~~~----~~~l~tgs~Dg~i~vWd~~~~----------~~~~~l~~H~~~V~~l~~s~-~-~~l~s~s~   72 (355)
T d1nexb2           9 RGHMTSVITCLQFE----DNYVITGADDKMIRVYDSINK----------KFLLQLSGHDGGVWALKYAH-G-GILVSGST   72 (355)
T ss_dssp             ECCSSSCEEEEEEE----TTEEEEEETTTEEEEEETTTT----------EEEEEEECCSSCEEEEEEET-T-TEEEEEET
T ss_pred             CCcCCCcEEEEEEC----CCEEEEEeCCCeEEEEECCCC----------cEEEEEECCCCCEEEEEEcC-C-CEEEEEec
Confidence            7998876 666664    379999999999999999864          34788999999999999998 4 58999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004745          138 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  217 (732)
Q Consensus       138 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~  217 (732)
                      |+.|++|++...+..                       ..............+.+.++ +..+++++.|+.|++||+++.
T Consensus        73 D~~i~iw~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~iw~~~~~  128 (355)
T d1nexb2          73 DRTVRVWDIKKGCCT-----------------------HVFEGHNSTVRCLDIVEYKN-IKYIVTGSRDNTLHVWKLPKE  128 (355)
T ss_dssp             TCCEEEEETTTTEEE-----------------------EEECCCSSCEEEEEEEEETT-EEEEEEEETTSEEEEEECCC-
T ss_pred             ccccccccccccccc-----------------------cccccccccccccccccccc-cceeeeecCCCcEEEEEccCC
Confidence            999999999876521                       11111223334566677787 789999999999999999877


Q ss_pred             CCCcccccCCCCCCcccccccc---ccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          218 PPLTSCQKRMSPPPCVNYFCPM---HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      ............+.........   ......|.. .+  ..+.+++++++++..|+.|++||+.++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~  191 (355)
T d1nexb2         129 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA-SV--RTVSGHGNIVVSGSYDNTLIVWDVAQM  191 (355)
T ss_dssp             ----------CCCEEESCTTTCTTEEEEEECCSS-CE--EEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred             ceeccccccceeccceeccccccceeeeeeeccc-cc--cccccccceeeeecccceeeeeecccc
Confidence            6543322111110000000000   000011111 12  345667889999999999999999874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.5e-29  Score=258.98  Aligned_cols=288  Identities=14%  Similarity=0.168  Sum_probs=225.5

Q ss_pred             eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcE
Q 004745           52 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  131 (732)
Q Consensus        52 ~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  131 (732)
                      +..+++ .+|.+.|++++|+|+  +++|+||+.||+|+|||+.++          ..+..+..|...|.+++|+|++ .+
T Consensus        46 ~~~~tL-~GH~~~I~~l~~s~~--~~~l~sgs~Dg~v~iWd~~~~----------~~~~~~~~~~~~v~~v~~~~~~-~~  111 (340)
T d1tbga_          46 RTRRTL-RGHLAKIYAMHWGTD--SRLLVSASQDGKLIIWDSYTT----------NKVHAIPLRSSWVMTCAYAPSG-NY  111 (340)
T ss_dssp             CEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTTEEEEEETTTT----------EEEEEEECSCSCEEEEEECTTS-SE
T ss_pred             eeeEEE-CCCCCCEEEEEECCC--CCEEEEEECCCceeeeecccc----------eeEEEEecccccEEeeEeeccc-ee
Confidence            455666 899999999999999  599999999999999999864          3367888999999999999954 89


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEE
Q 004745          132 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  211 (732)
Q Consensus       132 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~i  211 (732)
                      +++++.|+.+++|+.........                     ......++...........  ...+.....+.....
T Consensus       112 l~~~~~d~~i~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  168 (340)
T d1tbga_         112 VACGGLDNICSIYNLKTREGNVR---------------------VSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCAL  168 (340)
T ss_dssp             EEEEETTCCEEEEESSSSCSCCC---------------------EEEEECCCSSCEEEEEEEE--TTEEEEEETTTEEEE
T ss_pred             eeeecccceeecccccccccccc---------------------cceeccccccccccccccc--ccccccccccccccc
Confidence            99999999999999876652210                     0111123333444444444  457888889999999


Q ss_pred             EECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCC
Q 004745          212 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD  291 (732)
Q Consensus       212 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  291 (732)
                      ++..........                    ..+.. .+....+.+.+.++++++.|+.|++||+.+++          
T Consensus       169 ~~~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~----------  217 (340)
T d1tbga_         169 WDIETGQQTTTF--------------------TGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREGM----------  217 (340)
T ss_dssp             EETTTTEEEEEE--------------------ECCSS-CEEEEEECTTSSEEEEEETTTEEEEEETTTTE----------
T ss_pred             cccccccccccc--------------------cccce-eEeeeccccccceeEEeecCceEEEEECCCCc----------
Confidence            988764322111                    11222 48889999999999999999999999987621          


Q ss_pred             CCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCcc
Q 004745          292 ASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPML  371 (732)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  371 (732)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (340)
T d1tbga_         218 --------------------------------------------------------------------------------  217 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHH
Q 004745          372 RHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVE  451 (732)
Q Consensus       372 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  451 (732)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (340)
T d1tbga_         218 --------------------------------------------------------------------------------  217 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcc
Q 004745          452 NIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRD  531 (732)
Q Consensus       452 ~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~  531 (732)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (340)
T d1tbga_         218 --------------------------------------------------------------------------------  217 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEE
Q 004745          532 VEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYI  611 (732)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~l  611 (732)
                                                                          .++++.+|...++++.    |+|++++|
T Consensus       218 ----------------------------------------------------~~~~~~~h~~~i~~v~----~~p~~~~l  241 (340)
T d1tbga_         218 ----------------------------------------------------CRQTFTGHESDINAIC----FFPNGNAF  241 (340)
T ss_dssp             ----------------------------------------------------EEEEECCCSSCEEEEE----ECTTSSEE
T ss_pred             ----------------------------------------------------EEEEEeCCCCCeEEEE----ECCCCCEE
Confidence                                                                2234456666655555    69999999


Q ss_pred             EEecCCCcEEEEEcCcccEEEEEe--cCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCc-----
Q 004745          612 ASGSDDGRWFIWEKQTGRLIKMLL--GDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT-----  684 (732)
Q Consensus       612 asgs~Dg~i~iWd~~tg~~~~~l~--gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~-----  684 (732)
                      ++|+.||+|++||+...+.+..+.  .|...|++++|+|++++|++|+.||+|+|||+.+++++..+.||.+++.     
T Consensus       242 ~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s  321 (340)
T d1tbga_         242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT  321 (340)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEe
Confidence            999999999999999999888764  4778899999999999999999999999999999999999999999874     


Q ss_pred             hhHHHHHHHHHHHhhhccc
Q 004745          685 ADVLEAMESNQRKLSRNRE  703 (732)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~  703 (732)
                      ++...+++.+.|...++||
T Consensus       322 ~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         322 DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEccCCEEEEeC
Confidence            4555666666667777775

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=8.7e-30  Score=263.18  Aligned_cols=191  Identities=10%  Similarity=0.066  Sum_probs=149.5

Q ss_pred             eEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC--cEEEEEcCCCCCC
Q 004745           23 NAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGR   99 (732)
Q Consensus        23 ~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg--~i~vwd~~~~~~~   99 (732)
                      ..-.||| ||+++|+++. |.|+|||+.++..+. +  +|...|.+++|+|+  |++|++++.+.  .|++||+.++.  
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~-~--~~~~~v~~~~~spD--g~~l~~~~~~~g~~v~v~d~~~~~--   77 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGK--   77 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEE-C--SCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCC--
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCCcEEE-c--cCCCCEEEEEECCC--CCEEEEEEcCCCCEEEEEECCCCc--
Confidence            4567999 9999999875 799999998887654 3  69999999999999  58887776553  79999998632  


Q ss_pred             CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004745          100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  179 (732)
Q Consensus       100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (732)
                               ...+..|...|.+++|+|++ ++|++++.++.+++|++.+++..                         ..
T Consensus        78 ---------~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~-------------------------~~  122 (360)
T d1k32a3          78 ---------AEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT-------------------------VI  122 (360)
T ss_dssp             ---------EEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE-------------------------EE
T ss_pred             ---------EEEeeCCCceEEeeeecccc-cccceecccccccccccccccee-------------------------ee
Confidence                     56777899999999999955 89999999999999999877621                         11


Q ss_pred             CCCCccceEEEEecCCCCCEEEEEe----------CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004745          180 PPKQTLSLKSCDISSTRPHLLLVGG----------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       180 ~~~~~~~v~~i~~~~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                      ...+...+.+++|+|+ +++|+.+.          .++.+++||+.+.+....                     ..+.. 
T Consensus       123 ~~~~~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~---------------------~~~~~-  179 (360)
T d1k32a3         123 ERSREAMITDFTISDN-SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA---------------------TTENS-  179 (360)
T ss_dssp             EECSSSCCCCEEECTT-SCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC---------------------SCSSS-
T ss_pred             eecccccccchhhccc-eeeeeeeccccccceeeccccceeeeccccCceeee---------------------ccccc-
Confidence            1224446788999999 77887543          345699999987643211                     11222 


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      .+..++|+|+|++|+.++.++.+.+|+...
T Consensus       180 ~~~~~~~spdg~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         180 HDYAPAFDADSKNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             BEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ccccccccCCCCEEEEEeCCCceEcccccc
Confidence            478899999999999999999999998765

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-29  Score=265.60  Aligned_cols=95  Identities=14%  Similarity=0.216  Sum_probs=84.2

Q ss_pred             eeEeeeccccceeeecccccCCCCEEEEecCCCc---EEEEEcCcccEEEEEe-------------cCcccEEEEeecCC
Q 004745          586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGR---WFIWEKQTGRLIKMLL-------------GDEAVVNCVQCHPF  649 (732)
Q Consensus       586 ~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~---i~iWd~~tg~~~~~l~-------------gH~~~V~~v~fsp~  649 (732)
                      ..+.+|...+.++.    |||||++||+|+.|++   |++||+++|+++..|.             ||.+.|++|+|+|+
T Consensus       225 ~~l~~h~~~V~~l~----~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd  300 (393)
T d1sq9a_         225 HSMINNSNSIRSVK----FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS  300 (393)
T ss_dssp             C---CCCCCEEEEE----ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred             cccccccceEEEcc----cccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCC
Confidence            44567888866665    6999999999999975   9999999999999885             89999999999999


Q ss_pred             CCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCc
Q 004745          650 DCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT  684 (732)
Q Consensus       650 ~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~  684 (732)
                      +++|||+|.|++|||||+++++++.++.||.+++.
T Consensus       301 ~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         301 GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             CCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence            99999999999999999999999999999988774

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.8e-28  Score=248.06  Aligned_cols=215  Identities=13%  Similarity=0.126  Sum_probs=168.8

Q ss_pred             cccEeeeccC-CceeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeeE--------EEEccCCCcCeEEEEEecCCCCCE
Q 004745           10 SQERELEGHQ-GCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLL--------HSIETGHSANVFCTKFVPETSDEL   78 (732)
Q Consensus        10 ~~~~~l~~h~-~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~~~~~--------~~~~~~h~~~V~~~~~s~~~~g~~   78 (732)
                      ..+..+.+|. ..|++++|+|  +|++||+|+.||+|+|||+..++..        ..+ ..|.++|.+++|+++  +.+
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~s~~--~~~  129 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISDISWDFE--GRR  129 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEEEEECTT--SSE
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccccc-ccccCcEEEEEECCC--CCc
Confidence            4456777885 6899999998  6789999999999999998754322        223 468899999999999  588


Q ss_pred             EEEEEC--CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004745           79 VVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  156 (732)
Q Consensus        79 l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  156 (732)
                      |++++.  ++.+++|+..++          .++..+.+|...|++++|+|+++.++++++.|+.|++||+...+..    
T Consensus       130 l~~~~~~~~~~~~~~~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~----  195 (325)
T d1pgua1         130 LCVVGEGRDNFGVFISWDSG----------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS----  195 (325)
T ss_dssp             EEEEECCSSCSEEEEETTTC----------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE----
T ss_pred             cceeeccccceEEEEeeccc----------ccceeeeecccccccccccccccceEEEeecccccccccccccccc----
Confidence            877764  678999999863          3367888999999999999987778889999999999998765411    


Q ss_pred             CCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccc
Q 004745          157 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  236 (732)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  236 (732)
                                        ........+...|.+++|+|+.+.+|++++.|+.|++||+++++.+..+             
T Consensus       196 ------------------~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l-------------  244 (325)
T d1pgua1         196 ------------------ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI-------------  244 (325)
T ss_dssp             ------------------EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC-------------
T ss_pred             ------------------eecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccc-------------
Confidence                              1222344567789999999987889999999999999999988665544             


Q ss_pred             cccccccCCCcc---ccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          237 CPMHLSEHGRSS---LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       237 ~~~~~~~~~~~~---~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                             .+|..   ..+.++.| |+|++|++++.|+.|+|||+.++
T Consensus       245 -------~~~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         245 -------EDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             -------CBTTBCCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTT
T ss_pred             -------cccccccccceeeeec-cCCCEEEEEeCCCeEEEEECCCC
Confidence                   22222   12344444 68899999999999999999873

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=2.2e-27  Score=251.26  Aligned_cols=213  Identities=10%  Similarity=0.018  Sum_probs=140.0

Q ss_pred             EEcCCCC--EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCC
Q 004745           26 SWNSKGS--LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  103 (732)
Q Consensus        26 ~~s~dg~--~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~  103 (732)
                      .++.|.+  ++++.+.||+|+|||+.+++.+.++ ..| ..+..++|+|+  |++|++++.|++|++||+.+.+....  
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l-~~g-~~~~~vafSPD--Gk~l~~~~~d~~v~vwd~~t~~~~~~--   98 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI-DTG-YAVHISRMSAS--GRYLLVIGRDARIDMIDLWAKEPTKV--   98 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEE-ECC-SSEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCEEE--
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEE-eCC-CCeeEEEECCC--CCEEEEEeCCCCEEEEEccCCceeEE--
Confidence            3555543  5677889999999999999999999 455 46899999999  69999999999999999997543210  


Q ss_pred             CCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC
Q 004745          104 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ  183 (732)
Q Consensus       104 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (732)
                         ..+....+|...+.+++|+|++..+++++..++.+++||..+....            ...........  ......
T Consensus        99 ---~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~------------~~~~~~~~~~~--~~~~~~  161 (426)
T d1hzua2          99 ---AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK------------QIVSTRGMTVD--TQTYHP  161 (426)
T ss_dssp             ---EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE------------EEEECCEECSS--SCCEES
T ss_pred             ---EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcccee------------EEeeccCCCcc--ceeecC
Confidence               1122334667777888889977555667778999999999887632            11110000000  000012


Q ss_pred             ccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEE
Q 004745          184 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV  263 (732)
Q Consensus       184 ~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l  263 (732)
                      ......+.+++++..++++....+.+.+++......+...           .        .++ +..+..+.|+|+++++
T Consensus       162 ~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~--------~~~-~~~~~~~~~~~~g~~~  221 (426)
T d1hzua2         162 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT-----------S--------IGA-APFLADGGWDSSHRYF  221 (426)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEE-----------E--------EEC-CSSEEEEEECTTSCEE
T ss_pred             CCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeE-----------E--------ecc-CCccEeeeECCCCcEE
Confidence            2244566777774333334444566767766554322110           0        112 2248899999999998


Q ss_pred             EEEec-CCeEEEEECCCCC
Q 004745          264 LLSYS-GEHVYLMDVNHAG  281 (732)
Q Consensus       264 ~~~~~-dg~v~iwd~~~~~  281 (732)
                      +++.. +..+.+++..+.+
T Consensus       222 ~~a~~~~~~~~~~~~~~~~  240 (426)
T d1hzua2         222 MTAANNSNKVAVIDSKDRR  240 (426)
T ss_dssp             EEEETTCSEEEEEETTTTE
T ss_pred             Eeeeecccceeeeeccccc
Confidence            88876 6789999998854

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.2e-27  Score=238.13  Aligned_cols=167  Identities=18%  Similarity=0.181  Sum_probs=121.6

Q ss_pred             EeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe
Q 004745           46 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE  125 (732)
Q Consensus        46 Wd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  125 (732)
                      |+..+.+....+ ++|.+.|.+ +++++  |++|+||+.||+|+|||+.++          +++..+.+|...|.+++|+
T Consensus         1 W~~~~~~~~~~l-~GH~~~V~s-~~~~~--g~~l~sgs~Dg~i~vWd~~~~----------~~~~~~~~h~~~V~~v~~~   66 (342)
T d2ovrb2           1 WRRGELKSPKVL-KGHDDHVIT-CLQFC--GNRIVSGSDDNTLKVWSAVTG----------KCLRTLVGHTGGVWSSQMR   66 (342)
T ss_dssp             HHHSCCCCCEEE-ECSTTSCEE-EEEEE--TTEEEEEETTSCEEEEETTTC----------CEEEECCCCSSCEEEEEEE
T ss_pred             CCCCCCCcCEEE-CCcCCceEE-EEEEC--CCEEEEEeCCCeEEEEECCCC----------CEEEEEeCCCCCEEEEEeC
Confidence            555666777777 799999865 35566  489999999999999999864          3478899999999999998


Q ss_pred             cCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC
Q 004745          126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS  205 (732)
Q Consensus       126 p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~  205 (732)
                      |   ++|++++.|+.+++|+.......                         .........+......   ...++.+..
T Consensus        67 ~---~~l~s~s~D~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~---~~~~~~~~~  115 (342)
T d2ovrb2          67 D---NIIISGSTDRTLKVWNAETGECI-------------------------HTLYGHTSTVRCMHLH---EKRVVSGSR  115 (342)
T ss_dssp             T---TEEEEEETTSCEEEEETTTTEEE-------------------------EEECCCSSCEEEEEEE---TTEEEEEET
T ss_pred             C---Cccccceecccccccccccccce-------------------------ecccccceeEeeeecc---ccccccccc
Confidence            6   48999999999999998765411                         0011122244444444   357889999


Q ss_pred             CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          206 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       206 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      |+.+.+|+..+.+....+.                    ...   .....+.+....+++++.|+.|++||....
T Consensus       116 d~~i~~~~~~~~~~~~~~~--------------------~~~---~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~  167 (342)
T d2ovrb2         116 DATLRVWDIETGQCLHVLM--------------------GHV---AAVRCVQYDGRRVVSGAYDFMVKVWDPETE  167 (342)
T ss_dssp             TSEEEEEESSSCCEEEEEE--------------------CCS---SCEEEEEECSSCEEEEETTSCEEEEEGGGT
T ss_pred             ceeEEEeecccccceeeee--------------------ccc---ccceeeccccceeeeecCCCeEEEeecccc
Confidence            9999999998775433221                    011   112334456677999999999999998773

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=1.5e-27  Score=251.90  Aligned_cols=209  Identities=9%  Similarity=-0.013  Sum_probs=146.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004745           30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  109 (732)
Q Consensus        30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  109 (732)
                      +.-++++.+.||+|.|||..+++++..+. .+ ..+..++|+|+  |+++++++.|++|++||+.+.+....     ..+
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~-~g-~~~~~v~fSpD--G~~l~~~s~dg~v~~~d~~t~~~~~~-----~~i  101 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLD-TG-YAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEPTTV-----AEI  101 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEE-CS-SCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCCEE-----EEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEe-CC-CCeeEEEECCC--CCEEEEEcCCCCEEEEEeeCCCceEE-----EEE
Confidence            33346888999999999999999999994 44 46999999999  69999999999999999987543210     112


Q ss_pred             eeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEE
Q 004745          110 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  189 (732)
Q Consensus       110 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  189 (732)
                      ....+|...+.+..|+||+..++++++.++.|++||..+++...            .+.......  .............
T Consensus       102 ~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~------------~~~~~~~~~--~~~~~~~~~~~~~  167 (432)
T d1qksa2         102 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK------------IQSTRGMTY--DEQEYHPEPRVAA  167 (432)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE------------EEECCEECT--TTCCEESCCCEEE
T ss_pred             ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccccee------------eeccCCccc--cceeccCCCceeE
Confidence            33345666777778888775566889999999999999877321            111100000  0001112335677


Q ss_pred             EEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-
Q 004745          190 CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-  268 (732)
Q Consensus       190 i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-  268 (732)
                      +.++|++..++++...++.|.+||..+.+.....                    ..+.+..+..++|+|+|+++++++. 
T Consensus       168 v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~--------------------~i~~g~~~~~~~~spdg~~~~va~~~  227 (432)
T d1qksa2         168 ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT--------------------EISAERFLHDGGLDGSHRYFITAANA  227 (432)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE--------------------EEECCSSEEEEEECTTSCEEEEEEGG
T ss_pred             EEECCCCCEEEEEEccCCeEEEEEccCCCcceEE--------------------EEcccCccccceECCCCCEEEEeccc
Confidence            8999995555677777899999998876432211                    0011224788999999998888876 


Q ss_pred             CCeEEEEECCCCC
Q 004745          269 GEHVYLMDVNHAG  281 (732)
Q Consensus       269 dg~v~iwd~~~~~  281 (732)
                      ++.+.++|..+.+
T Consensus       228 ~~~v~v~d~~~~~  240 (432)
T d1qksa2         228 RNKLVVIDTKEGK  240 (432)
T ss_dssp             GTEEEEEETTTTE
T ss_pred             cceEEEeecccce
Confidence            5689999998744

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.4e-26  Score=232.32  Aligned_cols=178  Identities=10%  Similarity=0.087  Sum_probs=126.6

Q ss_pred             eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004745           53 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  132 (732)
Q Consensus        53 ~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  132 (732)
                      .+. +.++|++.|++|+|+|+  +++|++|+.||+|+|||+.......       .+....+|..+|.+++|+|+++.+|
T Consensus         3 ~v~-~~~~h~d~I~~l~fsp~--~~~L~s~s~Dg~v~iwd~~~~~~~~-------~~~~~~~h~~~V~~v~f~~~~~~~l   72 (342)
T d1yfqa_           3 IVQ-IEQAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKNV-------DLLQSLRYKHPLLCCNFIDNTDLQI   72 (342)
T ss_dssp             EEE-CSSCCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETTTTEE-------EEEEEEECSSCEEEEEEEESSSEEE
T ss_pred             eEE-cCCCCCCCEEEEEEeCC--CCEEEEEECCCeEEEEEccCCCcce-------EEEEecCCCCCEEEEEEeCCCCCEE
Confidence            344 44899999999999999  5899999999999999998643211       1334447999999999999777899


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004745          133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  212 (732)
Q Consensus       133 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw  212 (732)
                      ++|+.||.|++|++........                      .  ...+........+.++ ...+++++.++.+++|
T Consensus        73 ~sg~~d~~v~~w~~~~~~~~~~----------------------~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w  127 (342)
T d1yfqa_          73 YVGTVQGEILKVDLIGSPSFQA----------------------L--TNNEANLGICRICKYG-DDKLIAASWDGLIEVI  127 (342)
T ss_dssp             EEEETTSCEEEECSSSSSSEEE----------------------C--BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEE
T ss_pred             EEcccccceeeeeccccccccc----------------------c--cccccccccccccccc-ccccccccccccccee
Confidence            9999999999999987653200                      0  0111112333444444 6799999999999999


Q ss_pred             ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      |++............              . ..........+.+.+.+..+++++.|+.|++|++...
T Consensus       128 d~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  180 (342)
T d1yfqa_         128 DPRNYGDGVIAVKNL--------------N-SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC  180 (342)
T ss_dssp             CHHHHTTBCEEEEES--------------C-SSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCC
T ss_pred             eccccccceeeeccc--------------c-cccccceeeeeeeeccCCceeeecCCCcEEEEecccC
Confidence            987654332211000              0 0011112455677888999999999999999999873

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.7e-24  Score=215.57  Aligned_cols=101  Identities=15%  Similarity=0.170  Sum_probs=83.9

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEE-EEecCcccEEEEeecCCC----------CeEEEecCCCcEEEEcCCC-CC
Q 004745          604 LGQRGDYIASGSDDGRWFIWEKQTGRLIK-MLLGDEAVVNCVQCHPFD----------CVVATSGIDNTIKIWTPSA-SV  671 (732)
Q Consensus       604 ~s~dg~~lasgs~Dg~i~iWd~~tg~~~~-~l~gH~~~V~~v~fsp~~----------~~l~S~s~D~~i~vW~~~~-~~  671 (732)
                      |+|||++||+|+.||.|++||+.+++.+. .+.+|...|++++|+|.+          .+|||||.|++|+||++.. .+
T Consensus       170 ~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~  249 (287)
T d1pgua2         170 ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK  249 (287)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC
T ss_pred             eccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe
Confidence            69999999999999999999999998765 578999999999999754          6899999999999999976 55


Q ss_pred             CccccCCCCCCCch----hHHHHHHHHHHHhhhcccc
Q 004745          672 PSIVSGGAAGPDTA----DVLEAMESNQRKLSRNREH  704 (732)
Q Consensus       672 ~~~~~~gh~~~~~~----~~~~~~~~~~~~~~~~~~~  704 (732)
                      .+..+.||.+.+..    +...+++...|...++|+.
T Consensus       250 ~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         250 IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             CEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             EEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            67788899988752    1224666667777777764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.8e-24  Score=211.46  Aligned_cols=157  Identities=16%  Similarity=0.274  Sum_probs=113.9

Q ss_pred             cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004745           59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  138 (732)
Q Consensus        59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  138 (732)
                      ..|...|+|++|  +  |++|+||+.||+|+|||+.+.          +++..+.+|...|++++|.   +++|++|+.|
T Consensus        12 ~~~~~~V~c~~~--d--~~~l~sgs~Dg~i~vWd~~~~----------~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D   74 (293)
T d1p22a2          12 SETSKGVYCLQY--D--DQKIVSGLRDNTIKIWDKNTL----------ECKRILTGHTGSVLCLQYD---ERVIITGSSD   74 (293)
T ss_dssp             CSSCCCEEEEEC--C--SSEEEEEESSSCEEEEESSSC----------CEEEEECCCSSCEEEEECC---SSEEEEEETT
T ss_pred             CCCCCCEEEEEE--c--CCEEEEEeCCCeEEEEECCCC----------cEEEEEecCCCCEeeeecc---cceeeccccc
Confidence            578889999765  5  489999999999999999864          3478899999999999874   4799999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      +.|++|++..+...              ..           .......  ...+.+. ...++++..++.+++||.....
T Consensus        75 ~~i~~~~~~~~~~~--------------~~-----------~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  126 (293)
T d1p22a2          75 STVRVWDVNTGEML--------------NT-----------LIHHCEA--VLHLRFN-NGMMVTCSKDRSIAVWDMASPT  126 (293)
T ss_dssp             SCEEEEESSSCCEE--------------EE-----------ECCCCSC--EEEEECC-TTEEEEEETTSCEEEEECSSSS
T ss_pred             cccccccccccccc--------------cc-----------ccccccc--ccccccc-ccceeecccccceeEeeccccc
Confidence            99999999887621              00           0001111  2223333 5589999999999999998764


Q ss_pred             CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                      ......          .+       ..|.. .+..+.+.+  ..+++++.|+.|++||+.++
T Consensus       127 ~~~~~~----------~~-------~~~~~-~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~  168 (293)
T d1p22a2         127 DITLRR----------VL-------VGHRA-AVNVVDFDD--KYIVSASGDRTIKVWNTSTC  168 (293)
T ss_dssp             CCEEEE----------EE-------CCCSS-CEEEEEEET--TEEEEEETTSEEEEEETTTC
T ss_pred             cccccc----------cc-------ccccc-ccccceecc--cccccccCCCceeeecCCCC
Confidence            322110          00       22333 476666654  56889999999999999874

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=4.4e-23  Score=217.23  Aligned_cols=219  Identities=10%  Similarity=0.055  Sum_probs=149.6

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee--EEEEc--cCCCcCeEEEEEecCCCCCEE-EE
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIE--TGHSANVFCTKFVPETSDELV-VS   81 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~--~~~~~--~~h~~~V~~~~~s~~~~g~~l-~s   81 (732)
                      .+.++++.+..| ..+..++|||||++|++++.|++|++||+.+++.  +..+.  ..|.+.+.+..|+|+  |++| ++
T Consensus        50 ~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD--G~~l~vs  126 (432)
T d1qksa2          50 STYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE--DKYAIAG  126 (432)
T ss_dssp             TTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT--TTEEEEE
T ss_pred             CCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC--CCEEEEE
Confidence            567888899877 4699999999999999999999999999988763  33332  245666777788888  5765 78


Q ss_pred             EECCCcEEEEEcCCCCCCCCCCCCCCCceeec-----------cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004745           82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-----------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  150 (732)
Q Consensus        82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-----------~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~  150 (732)
                      ++.+++|++||..+.+.          +..+.           .+......+.++|++..++++...++.|.+||..+.+
T Consensus       127 ~~~~~~v~i~d~~t~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~  196 (432)
T d1qksa2         127 AYWPPQYVIMDGETLEP----------KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN  196 (432)
T ss_dssp             EEETTEEEEEETTTCCE----------EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred             cCCCCeEEEEeCccccc----------eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCC
Confidence            88899999999987532          22222           2345567889999876777888889999999987765


Q ss_pred             CCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe-CCCeEEEEECCCCCCCcccccCCCC
Q 004745          151 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSP  229 (732)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~  229 (732)
                      ..            .+..+..            ...+..+.|+|+ ++++++++ .++.+.++|..+.+.+..+..... 
T Consensus       197 ~~------------~~~~i~~------------g~~~~~~~~spd-g~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~-  250 (432)
T d1qksa2         197 NL------------KTTEISA------------ERFLHDGGLDGS-HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ-  250 (432)
T ss_dssp             EE------------EEEEEEC------------CSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-
T ss_pred             cc------------eEEEEcc------------cCccccceECCC-CCEEEEeccccceEEEeecccceEEEEeccCcc-
Confidence            21            1122211            225688999999 66665555 467899999988765433321110 


Q ss_pred             CCccccccccccccCCCccccEEEEEEcCCCCEEEEEe-cCCeEEEEECCC
Q 004745          230 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH  279 (732)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-~dg~v~iwd~~~  279 (732)
                                    ..+.. ......+...+....+.. .++.|.+|+...
T Consensus       251 --------------~~~~~-~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         251 --------------TPHPG-RGANFVHPTFGPVWATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             --------------SBCCT-TCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             --------------ccccC-cccceecCCCCceecccccCCceEEeccccc
Confidence                          11112 233445555555444443 378999998765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=8.1e-23  Score=215.73  Aligned_cols=188  Identities=9%  Similarity=0.030  Sum_probs=119.9

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEE--EEc--cCCCcCeEEEEEecCCCCCEE-EE
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH--SIE--TGHSANVFCTKFVPETSDELV-VS   81 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~--~~~--~~h~~~V~~~~~s~~~~g~~l-~s   81 (732)
                      .+.++++++..|. .+..++|||||++|++++.|++|++||+.+++...  .+.  .+|.+.+.+++|+|+  |+++ ++
T Consensus        50 ~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spD--G~~l~v~  126 (426)
T d1hzua2          50 DSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYE--DRYTIAG  126 (426)
T ss_dssp             TTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCT--TTEEEEE
T ss_pred             CCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCC--CCEEEEe
Confidence            4678888998874 58999999999999999999999999999887443  331  256677788888999  4765 55


Q ss_pred             EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004745           82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  161 (732)
                      +..++.+++||..+..          ++..+..|...+....+.+++....+..+.|+...++.......          
T Consensus       127 ~~~~~~v~i~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~----------  186 (426)
T d1hzua2         127 AYWPPQFAIMDGETLE----------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK----------  186 (426)
T ss_dssp             EEESSEEEEEETTTCC----------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE----------
T ss_pred             ecCCCeEEEEcCCccc----------eeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCe----------
Confidence            5689999999998742          24555555555555555554433444555555544444332210          


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEE-eCCCeEEEEECCCCCCCc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-GSDAFARLYDRRMLPPLT  221 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg-~~dg~v~iwd~~~~~~~~  221 (732)
                        ..++.........+ ....+...+..+.|+|+ +++++++ ..+..+.+++..+.+...
T Consensus       187 --i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~~~~a~~~~~~~~~~~~~~~~~~~  243 (426)
T d1hzua2         187 --VLLVNYKDIDNLTV-TSIGAAPFLADGGWDSS-HRYFMTAANNSNKVAVIDSKDRRLSA  243 (426)
T ss_dssp             --EEEEECSSSSSCEE-EEEECCSSEEEEEECTT-SCEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             --EEEEEeccccceee-EEeccCCccEeeeECCC-CcEEEeeeecccceeeeecccccEEE
Confidence              01111111100000 01123346789999999 4555544 566789999999876443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=1.2e-21  Score=201.27  Aligned_cols=159  Identities=9%  Similarity=0.083  Sum_probs=127.8

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004745           17 GHQGCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS   94 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~~dg--~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~   94 (732)
                      +|...|++++|+|||++|++++.+.  .|++||+.+++... + ..|...|.+++|+|+  |++|++++.++.+++|++.
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~-~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~~~~~  115 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-F-EENLGNVFAMGVDRN--GKFAVVANDRFEIMTVDLE  115 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-C-CCCCCSEEEEEECTT--SSEEEEEETTSEEEEEETT
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-e-eCCCceEEeeeeccc--ccccceecccccccccccc
Confidence            6999999999999999998776553  79999999877654 4 589999999999999  5999999999999999998


Q ss_pred             CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe----------CCCcEEEEECCCCCCCCCCCCCCcccce
Q 004745           95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS----------EDGTLRQHDFRQGSSCPPAGSSHQECRN  164 (732)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~  164 (732)
                      ...          ....+..|...+.+++|+|++ ++|+.+.          .++.+++||+.+++..            
T Consensus       116 ~~~----------~~~~~~~~~~~~~~~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~------------  172 (360)
T d1k32a3         116 TGK----------PTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF------------  172 (360)
T ss_dssp             TCC----------EEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE------------
T ss_pred             ccc----------eeeeeecccccccchhhccce-eeeeeeccccccceeeccccceeeeccccCcee------------
Confidence            642          256677888999999999965 7776543          3446889998776421            


Q ss_pred             EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004745          165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  217 (732)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~  217 (732)
                                    ....+...+..+.|+|+ +++|++++.++.+++||....
T Consensus       173 --------------~~~~~~~~~~~~~~spd-g~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         173 --------------AATTENSHDYAPAFDAD-SKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             --------------ECSCSSSBEEEEEECTT-SCEEEEEESCCCCCEECSSSS
T ss_pred             --------------eecccccccccccccCC-CCEEEEEeCCCceEccccccc
Confidence                          11123446788999999 789999999999999987643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=1.2e-20  Score=188.43  Aligned_cols=183  Identities=16%  Similarity=0.179  Sum_probs=133.3

Q ss_pred             EEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-EEEECCCcEEEEEcCCCCCCCCCCCCCCCceee
Q 004745           34 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY  112 (732)
Q Consensus        34 lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  112 (732)
                      .++++.|++|.|||+.+++.+.++.  ....+..++|+|+  |++| ++++.++.|++||+.+..          .+..+
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~--~g~~p~~va~spd--G~~l~v~~~~~~~i~v~d~~t~~----------~~~~~   70 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIP--VGSNPMGAVISPD--GTKVYVANAHSNDVSIIDTATNN----------VIATV   70 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTT--SSEEEEEEGGGTEEEEEETTTTE----------EEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEE--CCCCceEEEEeCC--CCEEEEEECCCCEEEEEECCCCc----------eeeee
Confidence            3567789999999999999999883  3355789999999  4766 567789999999998642          25666


Q ss_pred             ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEe
Q 004745          113 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  192 (732)
Q Consensus       113 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  192 (732)
                      ..+. .+..++|++++..+++++..++.+.+|+..+++..              ..+            .+.....++.|
T Consensus        71 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~------------~~~~~~~~~~~  123 (301)
T d1l0qa2          71 PAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA--------------GTV------------KTGKSPLGLAL  123 (301)
T ss_dssp             ECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--------------EEE------------ECSSSEEEEEE
T ss_pred             eccc-cccccccccccccccccccccceeeecccccceee--------------eec------------cccccceEEEe
Confidence            6554 46889999977667777888889999999876521              000            11225678999


Q ss_pred             cCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC-Ce
Q 004745          193 SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-EH  271 (732)
Q Consensus       193 ~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d-g~  271 (732)
                      +|++..+++++..++.+.+|+..+...+..+                    ..+.  .+..++++|+++.+++++.+ +.
T Consensus       124 ~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~  181 (301)
T d1l0qa2         124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTV--------------------SVGR--SPKGIAVTPDGTKVYVANFDSMS  181 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEE--------------------ECCS--SEEEEEECTTSSEEEEEETTTTE
T ss_pred             ecCCCeeeeeeccccceeeeeccccceeeec--------------------ccCC--CceEEEeeccccceeeecccccc
Confidence            9995545566677889999999887544332                    1111  37889999999988888775 55


Q ss_pred             EEEEECCC
Q 004745          272 VYLMDVNH  279 (732)
Q Consensus       272 v~iwd~~~  279 (732)
                      +.+|+...
T Consensus       182 ~~~~~~~~  189 (301)
T d1l0qa2         182 ISVIDTVT  189 (301)
T ss_dssp             EEEEETTT
T ss_pred             cccccccc
Confidence            55665444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=1.9e-21  Score=198.59  Aligned_cols=113  Identities=11%  Similarity=0.084  Sum_probs=85.9

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-EEEECCCcEEEEEcCCCCCCCCCC
Q 004745           25 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDD  103 (732)
Q Consensus        25 l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-~s~~~dg~i~vwd~~~~~~~~~~~  103 (732)
                      ++|++++++|++++.|++|.|||+.+++.+.++...|...+.+++|+|+  |+++ +++..++.|++||+.+.+.     
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spD--G~~l~v~~~~~~~v~~~d~~t~~~-----   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTCKN-----   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTTEE-----
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCC--CCEEEEEECCCCcEEEEeCccCee-----
Confidence            4789999999999999999999999999999884467777899999999  4766 5666789999999987432     


Q ss_pred             CCCCCceeec------cccCceeEEEEecCCCcEEEEEe------------CCCcEEEEECCCCC
Q 004745          104 NAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSAS------------EDGTLRQHDFRQGS  150 (732)
Q Consensus       104 ~~~~~~~~~~------~h~~~v~~l~~~p~~~~~l~s~s------------~dg~i~vwd~~~~~  150 (732)
                           +..+.      .+...+..++|+|++ +++++++            .++.+.+||..+++
T Consensus        75 -----~~~~~~~~~~~~~~~~~~~v~~s~DG-~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~  133 (346)
T d1jmxb_          75 -----TFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  133 (346)
T ss_dssp             -----EEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             -----eeeecccccccccCCceEEEEEecCC-CEEEEEecCCcceeeeeccCcceEEEEecccce
Confidence                 22221      122346789999966 5555544            46678888877654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=3.4e-20  Score=188.27  Aligned_cols=84  Identities=6%  Similarity=-0.151  Sum_probs=69.6

Q ss_pred             eEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEc
Q 004745          587 RYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT  666 (732)
Q Consensus       587 ~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~  666 (732)
                      .+.+|......+.    +++++.+++.+  ++.|++||+++++++..+. |...+.+++|+|||++|++++.|++|+|||
T Consensus       235 ~~~~~~~~~~~~~----~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         235 EVRIMDVFYFSTA----VNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEEECSSCEEEEE----ECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             EecCCCcceEEEE----ecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            3444544433333    58999999877  5899999999999999886 677899999999999999999999999999


Q ss_pred             CCCCCCccccC
Q 004745          667 PSASVPSIVSG  677 (732)
Q Consensus       667 ~~~~~~~~~~~  677 (732)
                      ..+.+.+.++.
T Consensus       308 ~~t~~~v~~i~  318 (337)
T d1pbyb_         308 AETLEKKGQVD  318 (337)
T ss_dssp             TTTCCEEEEEE
T ss_pred             CCCCcEEEEEE
Confidence            99999887653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.80  E-value=4.6e-17  Score=167.78  Aligned_cols=206  Identities=10%  Similarity=-0.032  Sum_probs=135.8

Q ss_pred             eeccCCceeEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE------
Q 004745           15 LEGHQGCVNAISWNSKGSLLISGS-----DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA------   83 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg~~lasg~-----~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~------   83 (732)
                      ...+..++..++++|||+.++...     ..+.|.+||..+++.+.++ ..+..  ..++|+|+  |++|++++      
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~-~~~~~--~~~a~SpD--G~~l~va~~~~~~~   90 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV-NGGFL--PNPVAAHS--GSEFALASTSFSRI   90 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE-eCCCC--ccEEEcCC--CCEEEEEeecCCcc
Confidence            346889999999999999887652     3467999999999999988 45543  37999999  58888764      


Q ss_pred             ----CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCc-------eeEEEEecCCCcEEEE-EeCCCcEEEEECCCCCC
Q 004745           84 ----GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR-------VKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSS  151 (732)
Q Consensus        84 ----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~-------v~~l~~~p~~~~~l~s-~s~dg~i~vwd~~~~~~  151 (732)
                          .++.|.+||+.+.+.          +..+..+...       ...+.|+|++..+++. ...++.+.+|+....+.
T Consensus        91 ~~~~~~~~v~v~D~~t~~~----------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  160 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFLP----------IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD  160 (373)
T ss_pred             cccccceEEEEEECCCCcE----------EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE
Confidence                457899999997532          3333333322       2456777755333322 23455677787766541


Q ss_pred             CCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCC
Q 004745          152 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  231 (732)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~  231 (732)
                      .                             .+.....++.++|++...+++.+.|+.+.+||.............     
T Consensus       161 ~-----------------------------~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~-----  206 (373)
T d2madh_         161 D-----------------------------QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGA-----  206 (373)
T ss_pred             E-----------------------------EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeee-----
Confidence            1                             111245678899996667788999999999999876544322110     


Q ss_pred             ccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                               ....+... ....+.+++++. ++..+.++.+++|+..+.
T Consensus       207 ---------~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         207 ---------MLTAAQNL-LTQPAQANKSGR-IVWPVYSGKILQADISAA  244 (373)
T ss_pred             ---------ccccCccc-eeeeEEECCCce-EEEecCCceEEEEEcCCC
Confidence                     00011111 244566777665 456667889999998873

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.79  E-value=2.5e-17  Score=163.92  Aligned_cols=209  Identities=8%  Similarity=0.089  Sum_probs=149.0

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD   85 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d   85 (732)
                      .+.+.++++... ..+..++|+|||++|+ +++.++.|++||+.+++.+..+ ..+. .+..+.|++++ ...++++..+
T Consensus        20 ~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~-~~~~-~~~~~~~~~~~-~~~~~~~~~~   95 (301)
T d1l0qa2          20 TSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-PAGS-SPQGVAVSPDG-KQVYVTNMAS   95 (301)
T ss_dssp             TTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-ECSS-SEEEEEECTTS-SEEEEEETTT
T ss_pred             CCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee-eccc-ccccccccccc-cccccccccc
Confidence            456777777644 4578999999999874 6678899999999999999988 4554 46899999985 2455666678


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      +.+.+|+..+..          ....+. +...+.++.|+|++..+++++..++.+.+|+..+....             
T Consensus        96 ~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~-------------  151 (301)
T d1l0qa2          96 STLSVIDTTSNT----------VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI-------------  151 (301)
T ss_dssp             TEEEEEETTTTE----------EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-------------
T ss_pred             ceeeecccccce----------eeeecc-ccccceEEEeecCCCeeeeeeccccceeeeecccccee-------------
Confidence            899999998632          234444 45667889999987666777888899999999876521             


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC-CCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                       ..+            .....+..+.++|+ +..+++++. ++.+.+|+....+.....                    .
T Consensus       152 -~~~------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~  197 (301)
T d1l0qa2         152 -NTV------------SVGRSPKGIAVTPD-GTKVYVANFDSMSISVIDTVTNSVIDTV--------------------K  197 (301)
T ss_dssp             -EEE------------ECCSSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEE--------------------E
T ss_pred             -eec------------ccCCCceEEEeecc-ccceeeecccccccccccccceeeeecc--------------------c
Confidence             000            01125678899999 556665555 467778877765432221                    1


Q ss_pred             CCccccEEEEEEcCCCCEEEEEec---CCeEEEEECCC
Q 004745          245 GRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNH  279 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g~~l~~~~~---dg~v~iwd~~~  279 (732)
                      .+  ..+..++|+++++.+++++.   ++.|++||+.+
T Consensus       198 ~~--~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t  233 (301)
T d1l0qa2         198 VE--AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (301)
T ss_dssp             CS--SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             cc--CCcceeeccccccccccccccceeeeeeeeecCC
Confidence            11  13778999999998877654   36799999877

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=4e-18  Score=172.68  Aligned_cols=149  Identities=7%  Similarity=-0.026  Sum_probs=105.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeEEEEccC-CCcCeEEEEEecCCCCCEE-EEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004745           32 SLLISGSDDTHINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPS  109 (732)
Q Consensus        32 ~~lasg~~dg~i~vWd~~~~~~~~~~~~~-h~~~V~~~~~s~~~~g~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  109 (732)
                      ++|++++.|++|+|||+.+++.+..+... +...+.+++|+|+  |+++ ++++.++.|.+||+.+++.          +
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spD--g~~l~v~~~~~~~v~v~D~~t~~~----------~   69 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTGET----------L   69 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTCCE----------E
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCC--CCEEEEEECCCCeEEEEECCCCcE----------E
Confidence            48999999999999999999999988432 3456889999999  5776 5667899999999997432          3


Q ss_pred             eeeccc-----cCceeEEEEecCCCcEEEEEeC------------CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004745          110 ALYQCH-----TRRVKKLAVEVGNPHVVWSASE------------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus       110 ~~~~~h-----~~~v~~l~~~p~~~~~l~s~s~------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                      ..+..+     ...+..++|+|++ ++++++..            +..+.+||..+++..              ..    
T Consensus        70 ~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--------------~~----  130 (337)
T d1pbyb_          70 GRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR--------------KA----  130 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE--------------EE----
T ss_pred             EEEecCCCcccccceeeEEEcCCC-cEEEEeecCCcceeeeccccccceeeccccCCeEE--------------Ee----
Confidence            333332     3345678999966 66666553            456777777665411              00    


Q ss_pred             ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Q 004745          173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  222 (732)
Q Consensus       173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~  222 (732)
                          +.    ....+..++|+|+ ++++++++.  .+.+||..+.+....
T Consensus       131 ----~~----~~~~~~~~~~s~d-g~~l~~~~~--~~~~~d~~~~~~~~~  169 (337)
T d1pbyb_         131 ----FE----APRQITMLAWARD-GSKLYGLGR--DLHVMDPEAGTLVED  169 (337)
T ss_dssp             ----EE----CCSSCCCEEECTT-SSCEEEESS--SEEEEETTTTEEEEE
T ss_pred             ----cc----ccCCceEEEEcCC-CCEEEEEcC--CcceeeeecCcEEEE
Confidence                00    1124667899999 778888764  477899988765443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=2e-16  Score=161.55  Aligned_cols=201  Identities=8%  Similarity=-0.014  Sum_probs=120.9

Q ss_pred             CceeEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEE----------EC
Q 004745           20 GCVNAISWNSKGSLLISGS-----DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG----------AG   84 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~-----~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~----------~~   84 (732)
                      +|+.-.+.+|||+.+++..     .++.|.+||..+++.+.++ ..+.  +..++|+|+  |++|+..          ..
T Consensus         2 ~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~-~~g~--~~~~a~SpD--g~~l~v~~~~~~~~~~g~~   76 (355)
T d2bbkh_           2 EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-DGGF--LPNPVVADD--GSFIAHASTVFSRIARGER   76 (355)
T ss_dssp             CCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE-EECS--SCEEEECTT--SSCEEEEEEEEEETTEEEE
T ss_pred             CCcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE-ECCC--CCceEEcCC--CCEEEEEeCCCccccccCC
Confidence            3455556789999887653     3567999999999999988 4443  347999999  4766653          34


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeecc-------ccCceeEEEEecCCCcEEEEE--eCCCcEEEEECCCCCCCCCC
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFRQGSSCPPA  155 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~--s~dg~i~vwd~~~~~~~~~~  155 (732)
                      |+.|++||+.+...          +..+..       .......++|+|++ +.++.+  +.+..+.+|+..+++...  
T Consensus        77 d~~v~v~D~~t~~~----------~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~~~~~~~~~~~~~~~~--  143 (355)
T d2bbkh_          77 TDYVEVFDPVTLLP----------TADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKR--  143 (355)
T ss_dssp             EEEEEEECTTTCCE----------EEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEE--
T ss_pred             CCEEEEEECCCCCE----------EEEEecCCcceeecCCCCceEEEecCC-CeeEEecCCCCceeeeeecCCCcEee--
Confidence            78999999987432          222221       12334568999966 555444  356689999998875220  


Q ss_pred             CCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccc
Q 004745          156 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  235 (732)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  235 (732)
                                  .+.........    .......+.+++++..+++....++.+.+++.......               
T Consensus       144 ------------~~~~~~~~~~~----~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~---------------  192 (355)
T d2bbkh_         144 ------------MLDVPDCYHIF----PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE---------------  192 (355)
T ss_dssp             ------------EEECCSEEEEE----EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT---------------
T ss_pred             ------------EEecCCcceEe----ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce---------------
Confidence                        00000000000    00122334555553222223333444555554433211               


Q ss_pred             ccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004745          236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  280 (732)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~  280 (732)
                                +.. .+....+.+++..++.++.++.+++|++..+
T Consensus       193 ----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  226 (355)
T d2bbkh_         193 ----------DEF-LINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  226 (355)
T ss_dssp             ----------TSC-BCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             ----------ecc-eeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence                      111 2445677888888999999999999999874

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.7e-15  Score=152.92  Aligned_cols=196  Identities=14%  Similarity=0.176  Sum_probs=125.2

Q ss_pred             EEEEEeCCCcEEEEeCCCCee---EEEEccCCCcCeEEEEEecCCCCCEEEEEE-CCCcEEEEEcCCCCCCCCCCCCCCC
Q 004745           33 LLISGSDDTHINVWSYSSRKL---LHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITP  108 (732)
Q Consensus        33 ~lasg~~dg~i~vWd~~~~~~---~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~  108 (732)
                      .+++++.|++|+||++.....   +..+  .|.+.|.+++|+|+  |++|++++ .|+.|++|++.......      . 
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~--~~~~~v~~la~spD--G~~L~v~~~~d~~i~~~~i~~~~~~~------~-   74 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGAL------T-   74 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCCE------E-
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE--cCCCCEeEEEEeCC--CCEEEEEECCCCeEEEEEEeCCCCcE------E-
Confidence            457778999999999875433   3333  67889999999999  58885555 58999999998643221      0 


Q ss_pred             ceeeccccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccce
Q 004745          109 SALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL  187 (732)
Q Consensus       109 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  187 (732)
                      ......+...+..++|+|++ ++|++++ .++.|.+|+.......            ...           ....+...+
T Consensus        75 ~~~~~~~~~~p~~l~~spDg-~~l~v~~~~~~~v~~~~~~~~~~~------------~~~-----------~~~~~~~~~  130 (333)
T d1ri6a_          75 FAAESALPGSLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPV------------GVV-----------DVVEGLDGC  130 (333)
T ss_dssp             EEEEEECSSCCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEE------------EEE-----------EEECCCTTB
T ss_pred             EeeecccCCCceEEEEcCCC-CEEeecccCCCceeeeccccccce------------ecc-----------cccCCCccc
Confidence            11222344567889999966 6666665 5778999987665411            000           011123356


Q ss_pred             EEEEecCCCCCEEEEEe-CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEE
Q 004745          188 KSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS  266 (732)
Q Consensus       188 ~~i~~~~~~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~  266 (732)
                      .++.++|+ ++++++++ .+..|.+|+............            ....  . ..+.....++|++++.+++..
T Consensus       131 ~~v~~s~d-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------~~~~--~-~~g~~p~~i~~~~~~~~~~~~  194 (333)
T d1ri6a_         131 HSANISPD-NRTLWVPALKQDRICLFTVSDDGHLVAQDP------------AEVT--T-VEGAGPRHMVFHPNEQYAYCV  194 (333)
T ss_dssp             CCCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEEEEE------------EEEE--C-STTCCEEEEEECTTSSEEEEE
T ss_pred             eEEEeeec-ceeeeccccccceeeEEEeccCCcceeeec------------eeee--e-ecCCCccEEEEeccceeEEee
Confidence            77899999 56666655 556799999876543221100            0000  0 111236789999999888766


Q ss_pred             ec-CCeEEEEECCC
Q 004745          267 YS-GEHVYLMDVNH  279 (732)
Q Consensus       267 ~~-dg~v~iwd~~~  279 (732)
                      .. .+...+|+...
T Consensus       195 ~~~~~~~~v~~~~~  208 (333)
T d1ri6a_         195 NELNSSVDVWELKD  208 (333)
T ss_dssp             ETTTTEEEEEESSC
T ss_pred             ccccCceEEEeecc
Confidence            54 56777777654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.66  E-value=1.6e-14  Score=148.25  Aligned_cols=172  Identities=12%  Similarity=-0.003  Sum_probs=115.6

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeeEEEEccCCCcCe-------EEEE
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGHSANV-------FCTK   69 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~i~vWd~~~~~~~~~~~~~h~~~V-------~~~~   69 (732)
                      .+.+.+.++.++..+  .++|+|||++|++++          .++.|.|||+.+++.+..+ ..+....       ..+.
T Consensus        55 ~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~~~~~~~~~~~  131 (373)
T d2madh_          55 GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADI-ELPDAPRFDVGPYSWMNA  131 (373)
T ss_pred             CCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEE-ecCCcceeEeccCCCcEE
Confidence            466777777766654  799999999999875          3578999999999998887 4444433       4467


Q ss_pred             EecCCCCCEEEEE--ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004745           70 FVPETSDELVVSG--AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  147 (732)
Q Consensus        70 ~s~~~~g~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~  147 (732)
                      |++++  +.++..  ..++.+.+|+....              ....+.....++.++|++...+++.+.|+.+.+|+..
T Consensus       132 ~s~dg--~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~  195 (373)
T d2madh_         132 NTPNN--ADLLFFQFAAGPAVGLVVQGGS--------------SDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA  195 (373)
T ss_pred             EEeCC--CcEEEEEEcCCCceEEeeccCC--------------eEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcC
Confidence            88884  444333  34567888887742              2233445677889999887788899999999999988


Q ss_pred             CCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          148 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      ..+.....           .        ..............+.+.++ + .++..+.++.+.+|+.....
T Consensus       196 ~~~~~~~~-----------~--------~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         196 GGAAGAGL-----------V--------GAMLTAAQNLLTQPAQANKS-G-RIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             CceeeEEE-----------e--------eeccccCccceeeeEEECCC-c-eEEEecCCceEEEEEcCCCe
Confidence            77632100           0        00011112223344555654 3 56667788999999988654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.61  E-value=3.4e-14  Score=143.78  Aligned_cols=236  Identities=8%  Similarity=-0.053  Sum_probs=131.2

Q ss_pred             hhccccEeee-ccCCceeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeeEEEEccC-----CCcCeEEEEEecCCCCCEE
Q 004745            7 RRLSQERELE-GHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETG-----HSANVFCTKFVPETSDELV   79 (732)
Q Consensus         7 ~~~~~~~~l~-~h~~~V~~l~~s~dg~~l-asg~~dg~i~vWd~~~~~~~~~~~~~-----h~~~V~~~~~s~~~~g~~l   79 (732)
                      .+.+++++++ .|...+.+++|+|||++| ++++.++.|++||+.+++.+..+...     +...+..++|+|+  |+++
T Consensus        26 ~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~D--G~~l  103 (346)
T d1jmxb_          26 ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD--GKEV  103 (346)
T ss_dssp             TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTT--SSEE
T ss_pred             CCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecC--CCEE
Confidence            4567778877 456778999999999987 55567899999999999998877322     1234678999999  5777


Q ss_pred             EEEE------------CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004745           80 VSGA------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  147 (732)
Q Consensus        80 ~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~  147 (732)
                      +.++            .++.+.+|+..+.....       .+... .....+..+.+++ ++.++++   ++.+.+|++.
T Consensus       104 ~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~  171 (346)
T d1jmxb_         104 YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-------PVRTF-PMPRQVYLMRAAD-DGSLYVA---GPDIYKMDVK  171 (346)
T ss_dssp             EEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC-------CSEEE-ECCSSCCCEEECT-TSCEEEE---SSSEEEECTT
T ss_pred             EEEecCCcceeeeeccCcceEEEEecccceeee-------EEEee-eccCceEEEEecC-CCEEEEe---CCcceEEEcc
Confidence            6664            46788999988643211       11111 1234455566666 4355543   2468899988


Q ss_pred             CCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccce-EEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccC
Q 004745          148 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL-KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  226 (732)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~  226 (732)
                      +++......... ......+. ..+..............+ ............++++..+..+.+||+.+........  
T Consensus       172 ~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  247 (346)
T d1jmxb_         172 TGKYTVALPLRN-WNRKGYSA-PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF--  247 (346)
T ss_dssp             TCCEEEEECSTT-CCCTTBCC-CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE--
T ss_pred             CCCEEEEEecCC-CccceEEe-ccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEe--
Confidence            766321110000 00000000 000000000000111111 1112222224456666667788889988764322110  


Q ss_pred             CCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          227 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                                       ..+.. .+..+.+++++.+++.... +.|++||+.+
T Consensus       248 -----------------~~~~~-~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~  281 (346)
T d1jmxb_         248 -----------------ADLTE-LYFTGLRSPKDPNQIYGVL-NRLAKYDLKQ  281 (346)
T ss_dssp             -----------------EECSS-CEEEEEECSSCTTEEEEEE-SEEEEEETTT
T ss_pred             -----------------ecccc-eeEEEEEeCCCCEEEEecC-CeEEEEECCC
Confidence                             11222 4778888888877766554 5789998876

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=1.8e-13  Score=139.23  Aligned_cols=174  Identities=11%  Similarity=0.050  Sum_probs=101.0

Q ss_pred             hhccccEeeeccCCceeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeeEEEEccC------CCcCeEEEEE
Q 004745            7 RRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------HSANVFCTKF   70 (732)
Q Consensus         7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~i~vWd~~~~~~~~~~~~~------h~~~V~~~~~   70 (732)
                      .+.+++.++..+..+  .++|||||++|++.+          .|+.|++||+.+++.+..+...      .......++|
T Consensus        36 ~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (355)
T d2bbkh_          36 EAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL  113 (355)
T ss_dssp             TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred             CCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEE
Confidence            355667777665544  799999999887643          4789999999999988776211      1223456899


Q ss_pred             ecCCCCCEEEEEE--CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004745           71 VPETSDELVVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  148 (732)
Q Consensus        71 s~~~~g~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  148 (732)
                      +|+  |++++.+.  .+..+.+|+..+...          +..+..+... .  .+ +.+....+..+.|+...++....
T Consensus       114 s~d--g~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-~--~~-~~~~~~~~~~~~dg~~~~v~~~~  177 (355)
T d2bbkh_         114 TPD--GKTLLFYQFSPAPAVGVVDLEGKAF----------KRMLDVPDCY-H--IF-PTAPDTFFMHCRDGSLAKVAFGT  177 (355)
T ss_dssp             CTT--SSEEEEEECSSSCEEEEEETTTTEE----------EEEEECCSEE-E--EE-EEETTEEEEEETTSCEEEEECCS
T ss_pred             ecC--CCeeEEecCCCCceeeeeecCCCcE----------eeEEecCCcc-e--Ee-ecCCcceEEEcCCCCEEEEEecC
Confidence            999  47766654  467899999986421          2333322111 1  11 11223333444455444444333


Q ss_pred             CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          149 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      ....            ...+....       ...+...+....+.++ +..++.++.++.+++|++....
T Consensus       178 ~~~~------------~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~  227 (355)
T d2bbkh_         178 EGTP------------EITHTEVF-------HPEDEFLINHPAYSQK-AGRLVWPTYTGKIHQIDLSSGD  227 (355)
T ss_dssp             SSCC------------EEEECCCC-------SCTTSCBCSCCEEETT-TTEEEEEBTTSEEEEEECTTSS
T ss_pred             CCeE------------EEEecccc-------cceecceeeeccccCC-CCeEEEecCCCeEEEEecCCCc
Confidence            2211            01111000       0111223344556666 5688888999999999998764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=4e-13  Score=135.06  Aligned_cols=264  Identities=9%  Similarity=0.030  Sum_probs=163.0

Q ss_pred             ccCCceeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeeEEEE--ccCCCcCeEEEEEecCCCCCEEEEEEC-CCcEEEEE
Q 004745           17 GHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSI--ETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFN   92 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~-~dg~i~vWd~~~~~~~~~~--~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg~i~vwd   92 (732)
                      .|.+.|..|+|+|||++|++++ .|+.|++|++........+  ...+...+..++|+|+  |++|++++. ++.|.+|+
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spD--g~~l~v~~~~~~~v~~~~  111 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ--GQFVFVGSYNAGNVSVTR  111 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTT--SSEEEEEETTTTEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCC--CCEEeecccCCCceeeec
Confidence            5889999999999999886554 5899999998765433222  1234556788999999  588888875 67899998


Q ss_pred             cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004745           93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  172 (732)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (732)
                      .......        .......+...+.++.++|++...++....+..|.+|+........          .....    
T Consensus       112 ~~~~~~~--------~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~----  169 (333)
T d1ri6a_         112 LEDGLPV--------GVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV----------AQDPA----  169 (333)
T ss_dssp             EETTEEE--------EEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE----------EEEEE----
T ss_pred             cccccce--------ecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce----------eeece----
Confidence            8753221        1233445667788999999764444444456679999987654210          00000    


Q ss_pred             ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004745          173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  252 (732)
Q Consensus       173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (732)
                         ...  .........++|++++...+.+....+...+|+...........         ........  .........
T Consensus       170 ---~~~--~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------~~~~~~~~--~~~~~~~~~  233 (333)
T d1ri6a_         170 ---EVT--TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV---------QTLDMMPE--NFSDTRWAA  233 (333)
T ss_dssp             ---EEE--CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE---------EEEECSCT--TCCSCCCEE
T ss_pred             ---eee--eecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeee---------eeeeeeec--CCCccccce
Confidence               000  11122457899999844444455566788899876443211100         00000000  001112467


Q ss_pred             EEEEcCCCCEEEEEec-CCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcch
Q 004745          253 HVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGK  331 (732)
Q Consensus       253 ~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~  331 (732)
                      .+++++++++++.... ++.+.+|++...........         ..    .....+..++|+|||+++.  ++.+.++
T Consensus       234 ~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~~~~p~~~a~spDGk~l~--va~~~~~  298 (333)
T d1ri6a_         234 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG---------FQ----PTETQPRGFNVDHSGKYLI--AAGQKSH  298 (333)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE---------EE----ECSSSCCCEEECTTSSEEE--EECTTTC
T ss_pred             eEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEE---------Ee----CCCCCeeEEEEeCCCCEEE--EEECCCC
Confidence            7899999998776655 78999999887543322221         11    1123466789999999876  2455667


Q ss_pred             hhHH
Q 004745          332 CRML  335 (732)
Q Consensus       332 ~~~l  335 (732)
                      .+.+
T Consensus       299 ~v~v  302 (333)
T d1ri6a_         299 HISV  302 (333)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            8887

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.45  E-value=5.5e-13  Score=141.43  Aligned_cols=166  Identities=8%  Similarity=0.020  Sum_probs=109.3

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc----cCCCcCeEEEEEecCCCCCEEEEEEC---------CCcEEE
Q 004745           24 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAG---------DAEVRL   90 (732)
Q Consensus        24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~----~~h~~~V~~~~~s~~~~g~~l~s~~~---------dg~i~v   90 (732)
                      .+.|.++++++..  .|+.|.+||+.+++....+.    ..|...|.++.|||+  |++|+.++.         ++.+.+
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpD--g~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTT--SSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCC--CCEEEEEECCcceeeeccCceEEE
Confidence            5789999987764  57889999999998776551    235578999999999  588887753         467889


Q ss_pred             EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004745           91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  170 (732)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  170 (732)
                      ||+.++.           +..+..|...+..+.|+|++ +.||.. .++.+.+|+..+++............   .+...
T Consensus        97 ~d~~~~~-----------~~~l~~~~~~~~~~~~SPDG-~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~---~~~g~  160 (470)
T d2bgra1          97 YDLNKRQ-----------LITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI---IYNGI  160 (470)
T ss_dssp             EETTTTE-----------ECCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTT---EEESB
T ss_pred             EECCCCc-----------ccccccCCccccccccccCc-ceeeEe-ecccceEEECCCCceeeeeeccCCCc---ccccc
Confidence            9999743           45567788899999999966 677665 46789999998876432221111110   00000


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCe-EEEEEC
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDR  214 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~-v~iwd~  214 (732)
                      ......    .........+.|+|| |+.|+....|.. +..|++
T Consensus       161 ~d~~~~----~~~~~~~~~~~wSPD-Gk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         161 TDWVYE----EEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             CCHHHH----HHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEE
T ss_pred             cceeee----eeecCCccccEECCC-CCccceeEecCCcCceEEE
Confidence            000000    001123456789999 788888766533 555544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.37  E-value=4.3e-12  Score=129.64  Aligned_cols=64  Identities=9%  Similarity=0.006  Sum_probs=54.5

Q ss_pred             CcEEEEEcCcccEEEEEecCcccEEEEeecCCCC--eEEEecCCCcEEEEcCCCCCCccccCCCCCC
Q 004745          618 GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC--VVATSGIDNTIKIWTPSASVPSIVSGGAAGP  682 (732)
Q Consensus       618 g~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~--~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~  682 (732)
                      .+|.+||..+++.+.++.. ...+.+++|+|||+  ++++++.|++|+|||..+++.+.++....+|
T Consensus       294 ~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P  359 (368)
T d1mdah_         294 ENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP  359 (368)
T ss_dssp             EEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC
T ss_pred             ceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCC
Confidence            4699999999999998874 46799999999997  4678888999999999999999887755444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.35  E-value=4.5e-14  Score=143.29  Aligned_cols=112  Identities=9%  Similarity=0.025  Sum_probs=77.7

Q ss_pred             CCCccccccCCCCCCCCC-CCCCCCCCcccccccc-------ccceeEeeeccccceeeecccccCCCCEEEEecCCCcE
Q 004745          549 GDSARETVDANGSSGSPS-SSSQNDRIPYQPETVI-------DMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRW  620 (732)
Q Consensus       549 ~~~v~~~~~s~d~~~l~~-~~~~~~~~~~~~~~~~-------~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i  620 (732)
                      ...+..+++||||+++.. +..+.+..+|+.....       +....+.++.....-.....| +++|..+.|..-|..|
T Consensus       257 gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f-d~~g~~yts~~~ds~v  335 (441)
T d1qnia2         257 PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF-DGRGNAYTTLFIDSQV  335 (441)
T ss_dssp             BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE-CSSSEEEEEETTTTEE
T ss_pred             CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccccee-cCCceEEEcccccceE
Confidence            344678999999998754 5556677778865521       122333333322211122344 9999999999999999


Q ss_pred             EEEEcCcc----------cEEEEE-----ecCcccEEEEeecCCCCeEEEe---cCCCc
Q 004745          621 FIWEKQTG----------RLIKML-----LGDEAVVNCVQCHPFDCVVATS---GIDNT  661 (732)
Q Consensus       621 ~iWd~~tg----------~~~~~l-----~gH~~~V~~v~fsp~~~~l~S~---s~D~~  661 (732)
                      ..|++...          ..+..+     .||...+.+.+|+|||++|+|+   |.|..
T Consensus       336 ~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~  394 (441)
T d1qnia2         336 CKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRF  394 (441)
T ss_dssp             EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGS
T ss_pred             EEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccC
Confidence            99998522          244455     6999999999999999999999   55543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.23  E-value=1.4e-10  Score=122.36  Aligned_cols=126  Identities=8%  Similarity=0.093  Sum_probs=85.3

Q ss_pred             eeeccCCceeEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004745           14 ELEGHQGCVNAISWNSKGSLLISGSD---------DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG   84 (732)
Q Consensus        14 ~l~~h~~~V~~l~~s~dg~~lasg~~---------dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~   84 (732)
                      .|..|...|.++.|||||++|+.++.         ++.+.|||+.+++.. .+ ..|...+..+.|||+  |+.|+.. .
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l-~~~~~~~~~~~~SPD--G~~ia~~-~  130 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TE-ERIPNNTQWVTWSPV--GHKLAYV-W  130 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CS-SCCCTTEEEEEECSS--TTCEEEE-E
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-cc-ccCCccccccccccC--cceeeEe-e
Confidence            34456688999999999999998753         567899999998754 45 688899999999999  5888885 4


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCCceeecc---------ccCceeEEEEecCCCcEEEEEeCCC-cEEEEEC
Q 004745           85 DAEVRLFNLSRFSGRGLDDNAITPSALYQC---------HTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDF  146 (732)
Q Consensus        85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---------h~~~v~~l~~~p~~~~~l~s~s~dg-~i~vwd~  146 (732)
                      ++.+.+|+...+....... ....-..+.+         ..+....+.|+|++ +.|+....|. .+..|.+
T Consensus       131 ~~~l~~~~~~~g~~~~~t~-~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG-k~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         131 NNDIYVKIEPNLPSYRITW-TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             TTEEEEESSTTSCCEECCS-CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEE
T ss_pred             cccceEEECCCCceeeeee-ccCCCcccccccceeeeeeecCCccccEECCCC-CccceeEecCCcCceEEE
Confidence            7789999988653221100 0000001111         22345678899966 7777766543 3555554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.20  E-value=1e-10  Score=119.06  Aligned_cols=235  Identities=9%  Similarity=-0.005  Sum_probs=138.5

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeeEEEEccCCC-------cCeEEEEE
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGHS-------ANVFCTKF   70 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~i~vWd~~~~~~~~~~~~~h~-------~~V~~~~~   70 (732)
                      +.+++..+.++..+  .++|+|||+.|++.+          .|+.|++||..+++.+..+. .+.       .....++|
T Consensus        55 ~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~-~p~~~~~~~g~~p~~~a~  131 (368)
T d1mdah_          55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGN  131 (368)
T ss_dssp             TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEE
T ss_pred             CCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeec-CCccceecccCCccceEE
Confidence            44556666666654  589999999888764          36789999999999988773 222       22346899


Q ss_pred             ecCCCCCEEEEEE-CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004745           71 VPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  149 (732)
Q Consensus        71 s~~~~g~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~  149 (732)
                      +|+  |++|+.+. .++.+.+||+.+.+          .+..+..+...    .+.|.+...++..+.||.+.+|++...
T Consensus       132 SpD--Gk~l~va~~~~~~v~~~d~~~~~----------~~~~~~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~  195 (368)
T d1mdah_         132 CAS--SACLLFFLFGSSAAAGLSVPGAS----------DDQLTKSASCF----HIHPGAAATHYLGSCPASLAASDLAAA  195 (368)
T ss_dssp             CTT--SSCEEEEECSSSCEEEEEETTTE----------EEEEEECSSCC----CCEEEETTEEECCCCTTSCEEEECCSS
T ss_pred             CCC--CCEEEEEeCCCCeEEEEECCCCc----------EeEEeeccCcc----eEccCCCceEEEEcCCCCEEEEEecCC
Confidence            999  57777665 57999999998742          13333332221    122334466777777888888877654


Q ss_pred             CCCCCC-----CCCC----------cc--------cceEEeeccCCccccccCCCC----------CccceEEEEecCCC
Q 004745          150 SSCPPA-----GSSH----------QE--------CRNILLDLRCGAKRSLADPPK----------QTLSLKSCDISSTR  196 (732)
Q Consensus       150 ~~~~~~-----~~~~----------~~--------~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~i~~~~~~  196 (732)
                      ......     ...+          ..        ....+.+...+....+.....          .......+++++++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~  275 (368)
T d1mdah_         196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT  275 (368)
T ss_dssp             CCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred             ceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCC
Confidence            432100     0000          00        001112222111111111110          01112346788884


Q ss_pred             CCEEEEEe-CC--------CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EE-EE
Q 004745          197 PHLLLVGG-SD--------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EV-LL  265 (732)
Q Consensus       197 ~~~l~tg~-~d--------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l-~~  265 (732)
                       ..+++.. .+        ..|.+||..+++.+..+.                     . ...+.+++|+|||+ +| ++
T Consensus       276 -~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~---------------------~-~~~~~~~a~spDG~~~ly~s  332 (368)
T d1mdah_         276 -DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS---------------------N-GHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             -TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE---------------------E-EEEECEEEECCSSSCEEEEE
T ss_pred             -CEEEEEecCCCceeecCCceEEEEECCCCcEeEEec---------------------C-CCceeEEEECCCCCEEEEEE
Confidence             4444432 22        358999999887654431                     1 12488899999997 34 45


Q ss_pred             EecCCeEEEEECCCCCCcc
Q 004745          266 SYSGEHVYLMDVNHAGGRA  284 (732)
Q Consensus       266 ~~~dg~v~iwd~~~~~~~~  284 (732)
                      +..++.|++||..+++...
T Consensus       333 ~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         333 SAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             ETTTTEEEEEESSSCEEEE
T ss_pred             eCCCCeEEEEECCCCCEEE
Confidence            5668999999999976543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.95  E-value=1.6e-09  Score=109.49  Aligned_cols=279  Identities=8%  Similarity=-0.027  Sum_probs=153.7

Q ss_pred             eccCCceeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc-------
Q 004745           16 EGHQGCVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE-------   87 (732)
Q Consensus        16 ~~h~~~V~~l~~s~dg~~lasg-~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~-------   87 (732)
                      ..|.-......++|||++|++. ..+++|.++|+.++++...+...+...+..++|+|+++-.+++..+.+..       
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            3466666777778999988665 46889999999999988877456778899999999852124444443321       


Q ss_pred             ----------EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCCC---
Q 004745           88 ----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCP---  153 (732)
Q Consensus        88 ----------i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-g~i~vwd~~~~~~~~---  153 (732)
                                +..+|..+..          ....... ......+.++|++ +++++.+.+ ..+..++..+.....   
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~----------v~~qI~v-~~~p~~v~~spdG-k~a~vt~~nse~~~~id~~t~~~~d~i~  215 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMD----------VAWQVIV-DGNLDNTDADYTG-KYATSTCYNSERAVDLAGTMRNDRDWVV  215 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCS----------EEEEEEE-SSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSSBCEEE
T ss_pred             ccccccccceEEeecCccce----------eeEEEec-CCCccceEECCCC-CEEEEEecCCCceEEEeccCcceEEEEE
Confidence                      2345555421          1222222 3457789999976 555555443 333333332222110   


Q ss_pred             --------------CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004745          154 --------------PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  219 (732)
Q Consensus       154 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~  219 (732)
                                    ............+........  +...+.. .....+.++|++..+++++..+++|.|||+.+.+.
T Consensus       216 v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v--~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~  292 (441)
T d1qnia2         216 VFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEF--TRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD  292 (441)
T ss_dssp             EEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSS--EEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH
T ss_pred             eCCccceEEEecCCCEEEeCCCCcEEEEcccCCce--EEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhh
Confidence                          000000111122222221111  1111111 13467899999444456677899999999876432


Q ss_pred             CcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeec
Q 004745          220 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT  299 (732)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  299 (732)
                      .  +........|+...        ...+......+|+++|..+.+...|.+|..|++....   ..+........+.-.
T Consensus       293 ~--~~~~~~~~~~~~~~--------~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~---~~~~~~~~~~v~~~~  359 (441)
T d1qnia2         293 L--FEDKIELRDTIVAE--------PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAI---KHYNGDRVNYIRQKL  359 (441)
T ss_dssp             H--TTTSSCGGGGEEEC--------CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHH---HHHTTCCCCCEEEEE
T ss_pred             H--hhccCCcceEEEee--------cccccCcccceecCCceEEEcccccceEEEeccchhh---hhhccCCCceeEecc
Confidence            1  11111111111111        0011124567899999877777889999999985311   000000111111100


Q ss_pred             c--CCCCccCCCCCCccCCCccccc
Q 004745          300 P--TLNGLELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       300 ~--~~~~~~~~~~~~~~~~~g~~~~  322 (732)
                      +  -..+|...+....++|||++++
T Consensus       360 ~v~y~~GH~~~~~~~t~~pdGk~l~  384 (441)
T d1qnia2         360 DVQYQPGHNHASLTESRDADGKWLV  384 (441)
T ss_dssp             ECSSCEEEEEETTTTSTTCCCCEEE
T ss_pred             ccccCCCCCccccccccCCCCcEEE
Confidence            0  1247888899999999999999

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.85  E-value=2.5e-07  Score=90.36  Aligned_cols=220  Identities=9%  Similarity=0.024  Sum_probs=140.6

Q ss_pred             cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      +++..+... ..+..++++|||+++++...+++|..|+......  .+ ......+.+++|+++  |+++++...++.+.
T Consensus        19 ~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--~~-~~~~~~~~gla~~~d--G~l~v~~~~~~~~~   92 (302)
T d2p4oa1          19 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IH-ATVEGKVSGLAFTSN--GDLVATGWNADSIP   92 (302)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--EE-EECSSEEEEEEECTT--SCEEEEEECTTSCE
T ss_pred             cEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE--EE-EcCCCCcceEEEcCC--CCeEEEecCCceEE
Confidence            344444322 2578899999999999999999999998664422  23 345677999999999  58888888888898


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  169 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  169 (732)
                      .|+.....+..      ..+.. .......+.+++.+++ +++++-+.++.+..+|...+..             .++..
T Consensus        93 ~~~~~~~~~~~------~~~~~-~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~-------------~~~~~  151 (302)
T d2p4oa1          93 VVSLVKSDGTV------ETLLT-LPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSG-------------SIWLE  151 (302)
T ss_dssp             EEEEECTTSCE------EEEEE-CTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEE-------------EEEEE
T ss_pred             EEEecccccce------eeccc-cCCccccceeEEccCC-CEEeeccccccceeeeccCCcc-------------eeEec
Confidence            88876543321      01111 1234568899999954 8888888888888888776531             11110


Q ss_pred             cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004745          170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  249 (732)
Q Consensus       170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (732)
                      . ... ..............+.+..  ..++++.+..+.|+.+++..........          .+     .   . ..
T Consensus       152 ~-~~~-~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~----------~~-----~---~-~~  208 (302)
T d2p4oa1         152 H-PML-ARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPE----------IF-----V---E-QT  208 (302)
T ss_dssp             C-GGG-SCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCE----------EE-----E---E-SC
T ss_pred             C-Ccc-ceeeccCcccccccccccC--CceeeecCCCCeEEeccccccccccccc----------cc-----c---C-CC
Confidence            0 000 0111112223456677764  4577777888999999887543221110          00     0   0 01


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ....++++++|++.++...++.|..++...
T Consensus       209 ~pdgia~d~dG~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         209 NIDDFAFDVEGNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             CCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             CCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence            245699999999777777889999987654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=1.8e-06  Score=82.35  Aligned_cols=232  Identities=11%  Similarity=0.116  Sum_probs=132.4

Q ss_pred             hccccEeeeccCCceeEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE-
Q 004745            8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDT---HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-   83 (732)
Q Consensus         8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg---~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~-   83 (732)
                      .+...+.+..+...+..-+|||||+.||-.....   .+.+.+...+.....  ..+........|+|++  ..++... 
T Consensus        27 dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg--~~i~~~~~  102 (269)
T d2hqsa1          27 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDG--SKLAFALS  102 (269)
T ss_dssp             TSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE--ECCSSCEEEEEECTTS--SEEEEEEC
T ss_pred             CCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEE--eeeecccccceecCCC--CeeeEeee
Confidence            3445566666788889999999999999765432   466667666655433  3677888999999994  6666554 


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEE--ECCCCCCCCCCCCCCcc
Q 004745           84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH--DFRQGSSCPPAGSSHQE  161 (732)
Q Consensus        84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vw--d~~~~~~~~~~~~~~~~  161 (732)
                      .++...++........         ...............+++++...+++...++...+|  ++......         
T Consensus       103 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~---------  164 (269)
T d2hqsa1         103 KTGSLNLYVMDLASGQ---------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ---------  164 (269)
T ss_dssp             TTSSCEEEEEETTTCC---------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE---------
T ss_pred             cCCccceeeccccccc---------ceeeeeccccccccccccccccceecccccCCceEeeeecccccce---------
Confidence            3444444433322111         222233344455556777665666666666654444  44443311         


Q ss_pred             cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEE-eCCCeEEEEECCCCCCCcccccCCCCCCccccccccc
Q 004745          162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  240 (732)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (732)
                                    .+   ...........|+|+ +..++.. ..++...+|...........                 
T Consensus       165 --------------~~---~~~~~~~~~~~~spd-g~~~~~~~~~~~~~~i~~~~~~~~~~~~-----------------  209 (269)
T d2hqsa1         165 --------------RI---TWEGSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQV-----------------  209 (269)
T ss_dssp             --------------EC---CCSSSEEEEEEECTT-SSEEEEEEECSSCEEEEEEETTTCCEEE-----------------
T ss_pred             --------------ee---ecccccccccccccc-cceeEEEeecCCceeeeEeecccccceE-----------------
Confidence                          01   112235667789999 5555554 44455555544322111111                 


Q ss_pred             cccCCCccccEEEEEEcCCCCEEEEEec---CCeEEEEECCCCCCcceeeecCCCCceeeeccC
Q 004745          241 LSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  301 (732)
Q Consensus       241 ~~~~~~~~~~i~~l~~sp~g~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  301 (732)
                         ..... ......|+|||+.|+-.+.   ...|+++++..... ..+..........+|+|-
T Consensus       210 ---~~~~~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         210 ---LSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             ---CCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECCC
T ss_pred             ---eecCc-cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCCC
Confidence               00111 3566789999998876654   34788999987543 333333334445566663

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.52  E-value=6e-06  Score=78.17  Aligned_cols=204  Identities=7%  Similarity=-0.032  Sum_probs=123.4

Q ss_pred             eeeccCC--ceeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004745           14 ELEGHQG--CVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL   90 (732)
Q Consensus        14 ~l~~h~~--~V~~l~~s~dg~~lasg-~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v   90 (732)
                      .+.++..  .-..+++.++|+..++. +..+.+..++.......... ..-......++++++  |.++++....+.+++
T Consensus         6 ~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~gvav~~~--g~i~v~d~~~~~i~~   82 (260)
T d1rwia_           6 PFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGA--GTVYVTDFNNRVVTL   82 (260)
T ss_dssp             CCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC-CCSCCSCCCEEECTT--CCEEEEETTTEEEEE
T ss_pred             ecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec-cCCccCceEEEEcCC--CCEEEeeeeeceeee
Confidence            3445443  34799999999966654 45577777765544333222 222344678999998  577777666666666


Q ss_pred             EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004745           91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  170 (732)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  170 (732)
                      ++-...  .        .+.... ......++++.+++ +++++-..+..+..++.......                  
T Consensus        83 ~~~~~~--~--------~~~~~~-~~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~~~------------------  132 (260)
T d1rwia_          83 AAGSNN--Q--------TVLPFD-GLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQT------------------  132 (260)
T ss_dssp             CTTCSC--C--------EECCCC-SCCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSSCE------------------
T ss_pred             eeeccc--e--------eeeeee-eeeecccccccccc-eeEeeccccccccccccccceee------------------
Confidence            544321  1        111222 23457889999854 77776666666777776543311                  


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  250 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (732)
                            .... .......+++++++ ++++++...++.|..+|..........                    ..... .
T Consensus       133 ------~~~~-~~~~~p~~i~~~~~-g~~~v~~~~~~~i~~~d~~~~~~~~~~--------------------~~~~~-~  183 (260)
T d1rwia_         133 ------VLPF-TGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVVLP--------------------FTDIT-A  183 (260)
T ss_dssp             ------ECCC-CSCCSCCEEEECTT-CCEEEEEGGGTEEEEECTTTCCEEECC--------------------CSSCC-S
T ss_pred             ------eeee-cccCCcceeeecCC-CCEeeeccccccccccccccceeeeee--------------------ccccC-C
Confidence                  0000 01123467899998 778888888889999998754321100                    01111 3


Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          251 LTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       251 i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ...|+++++|+++++....+.|..++...
T Consensus       184 p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         184 PWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             EEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             CccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            67899999999777777788888887655

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.49  E-value=7.3e-05  Score=72.19  Aligned_cols=130  Identities=13%  Similarity=0.101  Sum_probs=91.0

Q ss_pred             CCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC
Q 004745           48 YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG  127 (732)
Q Consensus        48 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~  127 (732)
                      +...+.+..+..  ...+..++++|+  |+++++...+++|..|+....            ...+......+.+++|.|+
T Consensus        15 ~~~~~v~~~~p~--~~~~e~iAv~pd--G~l~vt~~~~~~I~~i~p~g~------------~~~~~~~~~~~~gla~~~d   78 (302)
T d2p4oa1          15 LAPAKIITSFPV--NTFLENLASAPD--GTIFVTNHEVGEIVSITPDGN------------QQIHATVEGKVSGLAFTSN   78 (302)
T ss_dssp             CCCEEEEEEECT--TCCEEEEEECTT--SCEEEEETTTTEEEEECTTCC------------EEEEEECSSEEEEEEECTT
T ss_pred             CCcccEEEECCC--CCCcCCEEECCC--CCEEEEeCCCCEEEEEeCCCC------------EEEEEcCCCCcceEEEcCC
Confidence            344556666632  235889999999  689999888999988886531            3444556678999999996


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC
Q 004745          128 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  207 (732)
Q Consensus       128 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg  207 (732)
                      + +++++...++.+..|+.......          ...+....            .......+.+.++ ++++++.+.++
T Consensus        79 G-~l~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~------------~~~~~n~i~~~~~-g~~~v~~~~~~  134 (302)
T d2p4oa1          79 G-DLVATGWNADSIPVVSLVKSDGT----------VETLLTLP------------DAIFLNGITPLSD-TQYLTADSYRG  134 (302)
T ss_dssp             S-CEEEEEECTTSCEEEEEECTTSC----------EEEEEECT------------TCSCEEEEEESSS-SEEEEEETTTT
T ss_pred             C-CeEEEecCCceEEEEEecccccc----------eeeccccC------------CccccceeEEccC-CCEEeeccccc
Confidence            5 78888888888888887654311          11111111            1225688999998 77888888888


Q ss_pred             eEEEEECCCC
Q 004745          208 FARLYDRRML  217 (732)
Q Consensus       208 ~v~iwd~~~~  217 (732)
                      .+..+|....
T Consensus       135 ~i~~~~~~~~  144 (302)
T d2p4oa1         135 AIWLIDVVQP  144 (302)
T ss_dssp             EEEEEETTTT
T ss_pred             cceeeeccCC
Confidence            8988888765

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.45  E-value=1.2e-05  Score=78.16  Aligned_cols=205  Identities=11%  Similarity=0.106  Sum_probs=125.3

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC----cCeEEEEEecCCCCCEEEEEEC-------------
Q 004745           22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS----ANVFCTKFVPETSDELVVSGAG-------------   84 (732)
Q Consensus        22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~----~~V~~~~~s~~~~g~~l~s~~~-------------   84 (732)
                      -..++|.++|+.|+++...+.|...+.......... ....    ...+.+++.++  |.+.++-..             
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~-~~~~g~~~~~pndl~~d~~--G~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAK-KDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCS-BCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTS
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEe-ccccccccCCCcEEEECCC--CCEEEecCccCcccccccceec
Confidence            356999999998888877777888897765432211 1111    23578999998  577776432             


Q ss_pred             --CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC----cEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004745           85 --DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP----HVVWSASEDGTLRQHDFRQGSSCPPAGSS  158 (732)
Q Consensus        85 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  158 (732)
                        .|.|..++..   +.         ...+.......+.++|+|++.    .++++-+..+.|..||+.....+      
T Consensus       150 ~~~G~v~~~~~d---g~---------~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~------  211 (314)
T d1pjxa_         150 EKFGSIYCFTTD---GQ---------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI------  211 (314)
T ss_dssp             SSCEEEEEECTT---SC---------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE------
T ss_pred             cCCceEEEEeec---Cc---------eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccc------
Confidence              1233333322   11         122223334557899998653    25556677788988887643211      


Q ss_pred             CcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccc
Q 004745          159 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  238 (732)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  238 (732)
                        .....+..+          ..........+++.++ |+++++....+.|.+||.+.++.+..+.              
T Consensus       212 --~~~~~~~~~----------~~~~~~~pdGiavD~~-GnlyVa~~~~g~I~~~dp~~g~~~~~i~--------------  264 (314)
T d1pjxa_         212 --ENKKVWGHI----------PGTHEGGADGMDFDED-NNLLVANWGSSHIEVFGPDGGQPKMRIR--------------  264 (314)
T ss_dssp             --EEEEEEEEC----------CCCSSCEEEEEEEBTT-CCEEEEEETTTEEEEECTTCBSCSEEEE--------------
T ss_pred             --ceeeEEEEc----------cccccccceeeEEecC-CcEEEEEcCCCEEEEEeCCCCEEEEEEE--------------
Confidence              001111111          1111224568999998 7888888888999999988765443321              


Q ss_pred             cccccCCCccccEEEEEEcCCCCEEEE-EecCCeEEEEECCCCC
Q 004745          239 MHLSEHGRSSLHLTHVTFSPNGEEVLL-SYSGEHVYLMDVNHAG  281 (732)
Q Consensus       239 ~~~~~~~~~~~~i~~l~~sp~g~~l~~-~~~dg~v~iwd~~~~~  281 (732)
                            ... ...++++|.|+++.|++ .+.+|.|+.+++....
T Consensus       265 ------~p~-~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         265 ------CPF-EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             ------CSS-SCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             ------CCC-CCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence                  111 14789999999986644 4567899999887654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.38  E-value=2.2e-05  Score=78.33  Aligned_cols=279  Identities=9%  Similarity=0.056  Sum_probs=140.2

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeeEEEEccCCCcCeEEEEEecCCCCCE--EEEEE-CCCcEEEEEc
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDEL--VVSGA-GDAEVRLFNL   93 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~-~~~~~~~~~~h~~~V~~~~~s~~~~g~~--l~s~~-~dg~i~vwd~   93 (732)
                      ...++.-|+|+|++++|.++.. +.+..|.+.. +................+.+++++  +.  +++.. ..+.|..+.+
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~--~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNT--RAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCC--EEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCC--CEEEEEEecCCCCEEEEeEc
Confidence            4566778999999999887765 5678886653 222222211223345677788884  43  33322 2455655544


Q ss_pred             CCCCCCCC----C-CCCC-CCce-eeccccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004745           94 SRFSGRGL----D-DNAI-TPSA-LYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNI  165 (732)
Q Consensus        94 ~~~~~~~~----~-~~~~-~~~~-~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (732)
                      ........    . .... .+.. ........+.++.|+|++ ++++++. ....|.+|+.......            .
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG-~~l~v~d~g~d~v~~~~~~~~g~~------------~  181 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEV------------E  181 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCE------------E
T ss_pred             cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCC-CEEEEeeCCCCEEEEEEccCCCce------------e
Confidence            32111000    0 0000 0000 011123357899999976 5554544 4457888876543211            0


Q ss_pred             EeeccCCccccccCCCCCccceEEEEecCCCCCEE-EEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004745          166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  244 (732)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (732)
                      ...       .... .........+.|+|+ ++++ ++.-.+++|.+|++............. . ..+....+......
T Consensus       182 ~~~-------~~~~-~~~g~gPr~i~f~pd-g~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~  250 (365)
T d1jofa_         182 LVG-------SVDA-PDPGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPVYTHHS-F-PLIPPGIPDRDPET  250 (365)
T ss_dssp             EEE-------EEEC-SSTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-E-ESSCTTCCCBCTTT
T ss_pred             ecc-------ceee-cCCCCceEEEEECCC-CceEEEeccCCCEEEEEEecCCCceEEEEeee-e-cccccccccccccc
Confidence            000       0001 111235688999999 5555 555568999999987654321110000 0 00000000000001


Q ss_pred             CCccccEEEEEEcCCCCEEEEEec-C-----CeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCC-C
Q 004745          245 GRSSLHLTHVTFSPNGEEVLLSYS-G-----EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQ-T  317 (732)
Q Consensus       245 ~~~~~~i~~l~~sp~g~~l~~~~~-d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  317 (732)
                      .........+.++|+|++|+++.. +     +.|..|++..........         ... ...........++++| +
T Consensus       251 ~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~---------~~~-~~~~~G~~p~~i~~~p~~  320 (365)
T d1jofa_         251 GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL---------FLS-PTPTSGGHSNAVSPCPWS  320 (365)
T ss_dssp             SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE---------EEE-ECSSCCTTCCCEEECTTC
T ss_pred             ccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe---------Eee-EEEcCCCCccEEEecCCC
Confidence            111223677899999999988854 2     347777776533221110         000 0111123456677887 7


Q ss_pred             ccccccccccCcchhhHH
Q 004745          318 NIRVRGEVATGLGKCRML  335 (732)
Q Consensus       318 g~~~~~~~~~~~d~~~~l  335 (732)
                      |+++.  ++...++.+.+
T Consensus       321 G~~l~--va~~~s~~v~v  336 (365)
T d1jofa_         321 DEWMA--ITDDQEGWLEI  336 (365)
T ss_dssp             TTEEE--EECSSSCEEEE
T ss_pred             CCEEE--EEeCCCCeEEE
Confidence            88665  25566677777

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.35  E-value=2.4e-05  Score=73.86  Aligned_cols=196  Identities=6%  Similarity=0.009  Sum_probs=125.5

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCC
Q 004745           21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  100 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~  100 (732)
                      ....++++++|+++++....+.+++++-.+...+...  .......++++.++  |+++++-..+..+..++....... 
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~--~~~~~p~~iavd~~--g~i~v~d~~~~~~~~~~~~~~~~~-  132 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF--DGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKTQT-  132 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC--CSCCSEEEEEECTT--CCEEEEEGGGTEEEEECTTCSSCE-
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee--eeeeeccccccccc--ceeEeeccccccccccccccceee-
Confidence            4567899999998888777777777765555544333  33356789999998  477776666676777776542110 


Q ss_pred             CCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCC
Q 004745          101 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  180 (732)
Q Consensus       101 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (732)
                              .... .-.....++++.|++ +++++...++.|..+|.......             .            ..
T Consensus       133 --------~~~~-~~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~~~~~~~-------------~------------~~  177 (260)
T d1rwia_         133 --------VLPF-TGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQV-------------V------------LP  177 (260)
T ss_dssp             --------ECCC-CSCCSCCEEEECTTC-CEEEEEGGGTEEEEECTTTCCEE-------------E------------CC
T ss_pred             --------eeee-cccCCcceeeecCCC-CEeeeccccccccccccccceee-------------e------------ee
Confidence                    1111 112345789999954 78888888888999987654311             0            00


Q ss_pred             CCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC
Q 004745          181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  260 (732)
Q Consensus       181 ~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g  260 (732)
                      .........++++++ ++++++....+.|..++....... .+             .      ...-. ....|+++++|
T Consensus       178 ~~~~~~p~gi~~d~~-g~l~vsd~~~~~i~~~~~~~~~~~-~~-------------~------~~~~~-~P~~i~~d~~g  235 (260)
T d1rwia_         178 FTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTST-VL-------------P------FTGLN-TPLAVAVDSDR  235 (260)
T ss_dssp             CSSCCSEEEEEECTT-CCEEEEETTTTEEEEECTTCSCCE-EC-------------C------CCSCC-CEEEEEECTTC
T ss_pred             ccccCCCccceeeee-eeeeeeecCCCEEEEEeCCCCeEE-EE-------------c------cCCCC-CeEEEEEeCCC
Confidence            111224578999998 788888888888988876543211 00             0      00111 36789999999


Q ss_pred             CEEEEEecCCeEEEEECC
Q 004745          261 EEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       261 ~~l~~~~~dg~v~iwd~~  278 (732)
                      .++++-..++.|+.++..
T Consensus       236 ~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         236 TVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             CEEEEEGGGTEEEEECCC
T ss_pred             CEEEEECCCCEEEEEeCC
Confidence            877776667777766543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.31  E-value=7.3e-05  Score=72.76  Aligned_cols=209  Identities=9%  Similarity=0.067  Sum_probs=122.2

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC--CcEEEEEcCC
Q 004745           18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AEVRLFNLSR   95 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d--g~i~vwd~~~   95 (732)
                      ....+..++|.++|++.++-...+.|..|+..+++....+ .........++|+++  |+++++...+  ....++.+..
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-~~~~~~p~gla~~~d--G~l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD--GRLFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT--SCEEEEECTTSSSCCEEEEECT
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE-eCCCCCeeEEEECCC--CCEEEEecCCCccceeEEEEcC
Confidence            3445578999999998888778899999998887666555 455667899999998  5777665432  2334444432


Q ss_pred             CCCCCCCCCCCCCceeecc---ccCceeEEEEecCCCcEEEEEeCC------CcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           96 FSGRGLDDNAITPSALYQC---HTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      ....         +.....   -....+.+++.+++ ++.++-...      +.+..++.....                
T Consensus       115 ~~~~---------~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~----------------  168 (319)
T d2dg1a1         115 NGDN---------LQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRT----------------  168 (319)
T ss_dssp             TSCS---------CEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCC----------------
T ss_pred             CCce---------eeeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEecccce----------------
Confidence            2111         111111   12347788898855 666553221      123333322211                


Q ss_pred             eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004745          167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  246 (732)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (732)
                             ...+.   ......+.++|+|++..++++-+..+.|+.||+..........         ........  .+.
T Consensus       169 -------~~~~~---~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~---------~~~~~~~~--~~~  227 (319)
T d2dg1a1         169 -------VTPII---QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF---------GATIPYYF--TGH  227 (319)
T ss_dssp             -------EEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE---------EEEEEEEC--CSS
T ss_pred             -------eEEEe---eccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccc---------cceeeecc--CCc
Confidence                   00000   0111347899999943355666778899999986432111000         00000000  111


Q ss_pred             ccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004745          247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  278 (732)
Q Consensus       247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~  278 (732)
                       . ....+++.++|++.++....+.|.+||..
T Consensus       228 -~-~PdGl~vD~~G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         228 -E-GPDSCCIDSDDNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             -S-EEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             -c-ceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence             1 25679999999988888889999999964

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.27  E-value=0.00046  Score=65.40  Aligned_cols=68  Identities=21%  Similarity=0.236  Sum_probs=52.0

Q ss_pred             ccCCCCEEEEec-CCCcEEEEEcCcccEEEEEecC--cccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCc
Q 004745          604 LGQRGDYIASGS-DDGRWFIWEKQTGRLIKMLLGD--EAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPS  673 (732)
Q Consensus       604 ~s~dg~~lasgs-~Dg~i~iWd~~tg~~~~~l~gH--~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~  673 (732)
                      ++++|+.+++-+ .++.|.+++ .+|+.+.++...  ....+.|++.|+|.++++ +.+..|++|...+..++
T Consensus       207 vD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~~~~  277 (279)
T d1q7fa_         207 INSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAPV  277 (279)
T ss_dssp             ECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCCT
T ss_pred             cccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeeecCC
Confidence            578888777654 455788888 678888877543  346889999999986665 56899999999888765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.26  E-value=0.00012  Score=69.60  Aligned_cols=120  Identities=11%  Similarity=0.135  Sum_probs=77.2

Q ss_pred             cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEec
Q 004745          114 CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  193 (732)
Q Consensus       114 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  193 (732)
                      .+......+++.+++ +++++....+.|.+||.....               +...         ...+......+|+++
T Consensus       154 ~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~G~~---------------~~~~---------g~~g~~~~P~giavD  208 (279)
T d1q7fa_         154 KHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY---------------LRQI---------GGEGITNYPIGVGIN  208 (279)
T ss_dssp             TTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE---------------EEEE---------SCTTTSCSEEEEEEC
T ss_pred             ccccccceeeeccce-eEEeeeccccceeeeecCCce---------------eeee---------cccccccCCcccccc
Confidence            345667788888844 788888888899999864321               1111         011223356789999


Q ss_pred             CCCCCEEEEEeC-CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeE
Q 004745          194 STRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV  272 (732)
Q Consensus       194 ~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v  272 (732)
                      ++ ++++++-.. ++.|.+|+.. ++.+..+..                  ... ......|++.|+|. |+++..++.|
T Consensus       209 ~~-G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~------------------~~~-~~~p~~vav~~dG~-l~V~~~n~~v  266 (279)
T d1q7fa_         209 SN-GEILIADNHNNFNLTIFTQD-GQLISALES------------------KVK-HAQCFDVALMDDGS-VVLASKDYRL  266 (279)
T ss_dssp             TT-CCEEEEECSSSCEEEEECTT-SCEEEEEEE------------------SSC-CSCEEEEEEETTTE-EEEEETTTEE
T ss_pred             cC-CeEEEEECCCCcEEEEECCC-CCEEEEEeC------------------CCC-CCCEeEEEEeCCCc-EEEEeCCCeE
Confidence            98 677776544 4579999854 433322211                  001 11367899999997 5556678999


Q ss_pred             EEEECCCC
Q 004745          273 YLMDVNHA  280 (732)
Q Consensus       273 ~iwd~~~~  280 (732)
                      ++|.....
T Consensus       267 ~~fr~~~~  274 (279)
T d1q7fa_         267 YIYRYVQL  274 (279)
T ss_dssp             EEEECSCC
T ss_pred             EEEEeeee
Confidence            99998873

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.23  E-value=5e-05  Score=75.58  Aligned_cols=187  Identities=7%  Similarity=0.012  Sum_probs=105.0

Q ss_pred             cCeEEEEEecCCCCCEEEEEEC-CCcEEEEEcCCCCCCCCCCCCCCCceee--ccccCceeEEEEecCCCcEEEEEeCCC
Q 004745           63 ANVFCTKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDG  139 (732)
Q Consensus        63 ~~V~~~~~s~~~~g~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~dg  139 (732)
                      ..+.++.|+|+  |+++++++. ...|.+|+...... .      ......  .........++|+|++..+.++...++
T Consensus       145 ~h~h~v~~sPd--G~~l~v~d~g~d~v~~~~~~~~g~-~------~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~  215 (365)
T d1jofa_         145 TGIHGMVFDPT--ETYLYSADLTANKLWTHRKLASGE-V------ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN  215 (365)
T ss_dssp             CCEEEEEECTT--SSEEEEEETTTTEEEEEEECTTSC-E------EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             CcceEEEECCC--CCEEEEeeCCCCEEEEEEccCCCc-e------eeccceeecCCCCceEEEEECCCCceEEEeccCCC
Confidence            34789999999  587777754 45788887664211 1      001111  123457889999997755556666788


Q ss_pred             cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC------CCeEEEEE
Q 004745          140 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYD  213 (732)
Q Consensus       140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~------dg~v~iwd  213 (732)
                      .|.+|++.........      ....+--...+.................+.++|+ +++|+++..      .+.|..|+
T Consensus       216 ~V~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spd-G~~lyvsnr~~~~~~~~~i~~~~  288 (365)
T d1jofa_         216 RICEYVIDPATHMPVY------THHSFPLIPPGIPDRDPETGKGLYRADVCALTFS-GKYMFASSRANKFELQGYIAGFK  288 (365)
T ss_dssp             EEEEEEECTTTCCEEE------EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT-SSEEEEEEEESSTTSCCEEEEEE
T ss_pred             EEEEEEecCCCceEEE------EeeeeccccccccccccccccccCCccceEECCC-CCEEEEEcccCCCccceEEEEEE
Confidence            9999998766532000      0000000000000011111223335668899999 677776642      22377777


Q ss_pred             CCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCEEEEEec-CCeEEEEECCCC
Q 004745          214 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYS-GEHVYLMDVNHA  280 (732)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~-dg~v~iwd~~~~  280 (732)
                      +.....+.....       +     ..   ....+.....++++| +|++|+++.. ++.|.+|++...
T Consensus       289 ~~~~g~~~~~~~-------~-----~~---~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         289 LRDCGSIEKQLF-------L-----SP---TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECTTSCEEEEEE-------E-----EE---CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ecCCCceeeEeE-------e-----eE---EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            765432211100       0     00   001111356689998 8998888865 799999998763

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.18  E-value=0.00034  Score=67.61  Aligned_cols=226  Identities=8%  Similarity=0.034  Sum_probs=120.6

Q ss_pred             CCceeEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCeeEEEEccC----CCcCeEEEEEecCCCCCEEEEEECCCc
Q 004745           19 QGCVNAISWNSKGSLLISGSD-------DTHINVWSYSSRKLLHSIETG----HSANVFCTKFVPETSDELVVSGAGDAE   87 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~-------dg~i~vWd~~~~~~~~~~~~~----h~~~V~~~~~s~~~~g~~l~s~~~dg~   87 (732)
                      -...-.++|.++|+++++...       +++|..||..+++..... ..    ....-..+.|.++  |+.++.+...+.
T Consensus        17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~-~~~~~~~~g~P~Gl~~~~d--g~~l~vad~~~~   93 (314)
T d1pjxa_          17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC-KPEVNGYGGIPAGCQCDRD--ANQLFVADMRLG   93 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE-CCEETTEECCEEEEEECSS--SSEEEEEETTTE
T ss_pred             CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEE-CCccccCCCcceeEEEeCC--CCEEEEEECCCe
Confidence            345667899999998876532       467999998887654433 22    1233578999998  477777777777


Q ss_pred             EEEEEcCCCCCCCCCCCCCCCceeecccc-CceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004745           88 VRLFNLSRFSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  166 (732)
Q Consensus        88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (732)
                      |...+.........       .....+.. ...+.+++.+++ ++.++-.. +....|+.....         ......+
T Consensus        94 i~~~~~~g~~~~~~-------~~~~~g~~~~~pndl~~d~~G-~lyvtd~~-~~~~~~~~~~~~---------~~~~G~v  155 (314)
T d1pjxa_          94 LLVVQTDGTFEEIA-------KKDSEGRRMQGCNDCAFDYEG-NLWITAPA-GEVAPADYTRSM---------QEKFGSI  155 (314)
T ss_dssp             EEEEETTSCEEECC-------SBCTTSCBCBCCCEEEECTTS-CEEEEECB-CBCTTSCCCBTT---------SSSCEEE
T ss_pred             EEEEeCCCcEEEEE-------eccccccccCCCcEEEECCCC-CEEEecCc-cCccccccccee---------ccCCceE
Confidence            88888764321110       00111111 135778888854 66655322 111111110000         0000111


Q ss_pred             eecc-CCccccccCCCCCccceEEEEecCCCC----CEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004745          167 LDLR-CGAKRSLADPPKQTLSLKSCDISSTRP----HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  241 (732)
Q Consensus       167 ~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~----~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (732)
                      +.+. .+....+.   .....-+.++|+|++.    .++++-+..+.|+.||+.....+...          +.+..  .
T Consensus       156 ~~~~~dg~~~~~~---~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~----------~~~~~--~  220 (314)
T d1pjxa_         156 YCFTTDGQMIQVD---TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK----------KVWGH--I  220 (314)
T ss_dssp             EEECTTSCEEEEE---EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE----------EEEEE--C
T ss_pred             EEEeecCceeEee---CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee----------eEEEE--c
Confidence            1110 01111000   0111235788988732    25556677889999987643222110          00000  0


Q ss_pred             ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Q 004745          242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  282 (732)
Q Consensus       242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~  282 (732)
                        .+........+++.++|++.++....+.|.+||...+..
T Consensus       221 --~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~  259 (314)
T d1pjxa_         221 --PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP  259 (314)
T ss_dssp             --CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC
T ss_pred             --cccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEE
Confidence              111111256799999999877777889999999877543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=0.00019  Score=73.63  Aligned_cols=113  Identities=8%  Similarity=0.080  Sum_probs=73.7

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccC---CCcCeEEEEEecCCCCCEEEEEE---------CCCcEEEEE
Q 004745           25 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG---HSANVFCTKFVPETSDELVVSGA---------GDAEVRLFN   92 (732)
Q Consensus        25 l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~---h~~~V~~~~~s~~~~g~~l~s~~---------~dg~i~vwd   92 (732)
                      ..|.+++.++.. ..+|.|.+||+.+++....+ ..   ..-.+....|||+  +++++...         ..+.+.++|
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~SpD--~~~vl~~~~~~~~~r~s~~~~~~i~d   97 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSYTGYYVLSK   97 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEE-cCccccccccceeEECCC--CCeEEEEEcccceeEeeccccEEEEE
Confidence            358888876654 45789999999988764434 22   2345778889999  47766653         346788999


Q ss_pred             cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004745           93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  151 (732)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~  151 (732)
                      +.++....        +.........+....|+|++ +.||-.. ++.|.+.+...+..
T Consensus        98 ~~~~~~~~--------l~~~~~~~~~l~~~~wSPDG-~~iafv~-~~nl~~~~~~~~~~  146 (465)
T d1xfda1          98 IPHGDPQS--------LDPPEVSNAKLQYAGWGPKG-QQLIFIF-ENNIYYCAHVGKQA  146 (465)
T ss_dssp             SSSCCCEE--------CCCTTCCSCCCSBCCBCSST-TCEEEEE-TTEEEEESSSSSCC
T ss_pred             ccCCceee--------ccCccCCccccceeeeccCC-ceEEEEe-cceEEEEecCCCce
Confidence            98754321        22222233445668899977 5555444 56788888876653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.09  E-value=0.00041  Score=67.26  Aligned_cols=207  Identities=13%  Similarity=0.078  Sum_probs=120.6

Q ss_pred             eeccCCceeEEEEcCCCCEEEEEeCC----CcEEEEeCCCCeeEEEEcc-CCCcCeEEEEEecCCCCCEEEEEECC----
Q 004745           15 LEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSSRKLLHSIET-GHSANVFCTKFVPETSDELVVSGAGD----   85 (732)
Q Consensus        15 l~~h~~~V~~l~~s~dg~~lasg~~d----g~i~vWd~~~~~~~~~~~~-~h~~~V~~~~~s~~~~g~~l~s~~~d----   85 (732)
                      +.........++|++||+++++...+    +.|...+............ .-....+.+.+.++  |.+.++....    
T Consensus        77 ~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~--G~l~vtd~~~~~~~  154 (319)
T d2dg1a1          77 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK--GGFYFTDFRGYSTN  154 (319)
T ss_dssp             EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT--SCEEEEECCCBTTB
T ss_pred             EeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEec--cceeeccccccccc
Confidence            33445567899999999988776432    3355555555544433311 12345788999998  5766664321    


Q ss_pred             --CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004745           86 --AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  163 (732)
Q Consensus        86 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  163 (732)
                        +.+..++....           .+..+...-...+.|+|+|++..++++-+..+.|..|++.......     .....
T Consensus       155 ~~g~v~~~~~dg~-----------~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~-----~~~~~  218 (319)
T d2dg1a1         155 PLGGVYYVSPDFR-----------TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI-----QPFGA  218 (319)
T ss_dssp             CCEEEEEECTTSC-----------CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE-----EEEEE
T ss_pred             CcceeEEEecccc-----------eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCcee-----ccccc
Confidence              22444443321           1333333345578899999775566777778899999986543110     00000


Q ss_pred             eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004745          164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  243 (732)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (732)
                      ....           . .........|++.++ |++.++....+.|.+||. .++.+..+..+...              
T Consensus       219 ~~~~-----------~-~~~~~~PdGl~vD~~-G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~--------------  270 (319)
T d2dg1a1         219 TIPY-----------Y-FTGHEGPDSCCIDSD-DNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD--------------  270 (319)
T ss_dssp             EEEE-----------E-CCSSSEEEEEEEBTT-CCEEEEEETTTEEEEECT-TSCEEEEEECTTGG--------------
T ss_pred             eeee-----------c-cCCccceeeeeEcCC-CCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcC--------------
Confidence            0000           0 011113467999998 788888888999999996 46655544321110              


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEec
Q 004745          244 HGRSSLHLTHVTFSPNGEEVLLSYS  268 (732)
Q Consensus       244 ~~~~~~~i~~l~~sp~g~~l~~~~~  268 (732)
                      .++.. .+++++|.|++..+++.+.
T Consensus       271 ~~~~~-~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         271 EGHML-RSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             GTCSC-BCCEEEECTTSCEEEEEEE
T ss_pred             CCcCc-eeeeEEEeCCCCEEEEEcC
Confidence            11222 3788999998887776654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.05  E-value=0.00077  Score=64.29  Aligned_cols=195  Identities=11%  Similarity=0.106  Sum_probs=122.0

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccC---CCcCeEEEEEecCCCCCEEEEEEC----CCcEEEE
Q 004745           19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG---HSANVFCTKFVPETSDELVVSGAG----DAEVRLF   91 (732)
Q Consensus        19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~---h~~~V~~~~~s~~~~g~~l~s~~~----dg~i~vw   91 (732)
                      ...+.++++.++|.++++ +.+ .|.++|..+++........   ....++.+.+.|+  |.+.++...    .+.-.+|
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~--G~iw~~~~~~~~~~~~g~l~  133 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIY  133 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCC--CCEEEEeccccccccceeEe
Confidence            457888999999887775 444 5899999988765433111   1235789999998  577666543    2344566


Q ss_pred             EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      .+..+.           +..+...-...+.++|++++..++++-+..+.|..+++.......      ......+     
T Consensus       134 ~~~~g~-----------~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~------~~~~~~~-----  191 (295)
T d2ghsa1         134 HVAKGK-----------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP------TGKAEVF-----  191 (295)
T ss_dssp             EEETTE-----------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB------SSCCEEE-----
T ss_pred             eecCCc-----------EEEEeeccCCcceeeecCCCceEEEeecccceeeEeeeccccccc------ccceEEE-----
Confidence            665321           222223344568899999776677777788899999875432110      0000111     


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  251 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (732)
                            ....+.......+++..+ |++.++.-..+.|..||.. ++.+..+..+                    .. .+
T Consensus       192 ------~~~~~~~g~pdG~~vD~~-GnlWva~~~~g~V~~~dp~-G~~~~~i~lP--------------------~~-~~  242 (295)
T d2ghsa1         192 ------IDSTGIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDTD-GNHIARYEVP--------------------GK-QT  242 (295)
T ss_dssp             ------EECTTSSSEEEEEEECTT-SCEEEEEETTTEEEEECTT-CCEEEEEECS--------------------CS-BE
T ss_pred             ------eccCcccccccceEEcCC-CCEEeeeeCCCceEEecCC-CcEeeEecCC--------------------CC-ce
Confidence                  112223345678899998 7788877778899999964 5555443211                    11 48


Q ss_pred             EEEEEc-CCCCEEEEEec
Q 004745          252 THVTFS-PNGEEVLLSYS  268 (732)
Q Consensus       252 ~~l~~s-p~g~~l~~~~~  268 (732)
                      ++++|- |+.+.|++.+.
T Consensus       243 T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         243 TCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEEEESTTSCEEEEEEB
T ss_pred             EEEEEeCCCCCEEEEEEC
Confidence            999996 67777766543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=0.0038  Score=58.13  Aligned_cols=204  Identities=9%  Similarity=0.042  Sum_probs=109.0

Q ss_pred             cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-C--cEEEEEcCCCCCCCCCCCCCCCceeeccccCc
Q 004745           42 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-A--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  118 (732)
Q Consensus        42 ~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  118 (732)
                      .|.|-|.. |.....+ ..+...+..-+|||+  |+.||-.... +  .+.+.+.....           ...+..+...
T Consensus        20 ~l~i~d~d-G~~~~~l-~~~~~~~~sP~wSPD--Gk~IAf~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~   84 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGA-----------VRQVASFPRH   84 (269)
T ss_dssp             EEEEEETT-SCSCEEE-EEESSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCC-----------EEEEECCSSC
T ss_pred             EEEEEcCC-CCCcEEE-ecCCCceeeeEECCC--CCEEEEEEeeccCcceeeeecccCc-----------eeEEeeeecc
Confidence            47777865 4333344 345677889999999  5888765443 3  35555555322           3455567788


Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCC
Q 004745          119 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH  198 (732)
Q Consensus       119 v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  198 (732)
                      .....|+|++..++.....++...++........                        ...............+++++..
T Consensus        85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~  140 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ------------------------IRQVTDGRSNNTEPTWFPDSQN  140 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC------------------------EEECCCCSSCEEEEEECTTSSE
T ss_pred             cccceecCCCCeeeEeeecCCccceeeccccccc------------------------ceeeeecccccccccccccccc
Confidence            8899999977555544444544444333222210                        0000111223344556666444


Q ss_pred             EEEEEeCCCe--EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC-CeEEEE
Q 004745          199 LLLVGGSDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-EHVYLM  275 (732)
Q Consensus       199 ~l~tg~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d-g~v~iw  275 (732)
                      .+++...++.  |.+.++........                     ..... ......|+|+++.++..+.+ +...+|
T Consensus       141 ~~~~~~~~g~~~i~~~~~~~~~~~~~---------------------~~~~~-~~~~~~~spdg~~~~~~~~~~~~~~i~  198 (269)
T d2hqsa1         141 LAFTSDQAGRPQVYKVNINGGAPQRI---------------------TWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIA  198 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTSSCCEEC---------------------CCSSS-EEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred             ceecccccCCceEeeeecccccceee---------------------ecccc-cccccccccccceeEEEeecCCceeee
Confidence            5556555665  44445544321100                     11111 36778999999988887764 444444


Q ss_pred             ECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004745          276 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR  322 (732)
Q Consensus       276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (732)
                      ...............                .......|+|||+.++
T Consensus       199 ~~~~~~~~~~~~~~~----------------~~~~~p~~SPDG~~i~  229 (269)
T d2hqsa1         199 KQDLATGGVQVLSST----------------FLDETPSLAPNGTMVI  229 (269)
T ss_dssp             EEETTTCCEEECCCS----------------SSCEEEEECTTSSEEE
T ss_pred             EeecccccceEeecC----------------ccccceEECCCCCEEE
Confidence            443322111111111                1122346899999988

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.41  E-value=0.035  Score=52.25  Aligned_cols=205  Identities=9%  Similarity=-0.024  Sum_probs=118.1

Q ss_pred             eEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCC
Q 004745           23 NAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  101 (732)
Q Consensus        23 ~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~  101 (732)
                      -+..|.+ ++.++.+--..+.|..||..+++... +  .....+.++++.++  |.++++ +.+ -|.++|..+++... 
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~--~~~~~~~~i~~~~d--g~l~va-~~~-gl~~~d~~tg~~~~-   92 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-H--ALPFMGSALAKISD--SKQLIA-SDD-GLFLRDTATGVLTL-   92 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E--ECSSCEEEEEEEET--TEEEEE-ETT-EEEEEETTTCCEEE-
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-E--ECCCCcEEEEEecC--CCEEEE-EeC-ccEEeecccceeeE-
Confidence            3466887 45555555567899999999886543 3  23456889999888  455554 554 58889988643211 


Q ss_pred             CCCCCCCceeecc--ccCceeEEEEecCCCcEEEEEeCC----CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004745          102 DDNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASED----GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  175 (732)
Q Consensus       102 ~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (732)
                             +.....  ....++.+.+.|++ ++.++...+    +.-.+|.+..++                       ..
T Consensus        93 -------l~~~~~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~~g~-----------------------~~  141 (295)
T d2ghsa1          93 -------HAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGK-----------------------VT  141 (295)
T ss_dssp             -------EECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTE-----------------------EE
T ss_pred             -------EeeeecCCCcccceeeEECCCC-CEEEEeccccccccceeEeeecCCc-----------------------EE
Confidence                   111111  12357888898855 555443221    223344443332                       11


Q ss_pred             cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEE
Q 004745          176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  255 (732)
Q Consensus       176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  255 (732)
                      .+.   ........+.|++++..++++-+..+.|..|++........-.      .  ..+.  ..  .+... ....++
T Consensus       142 ~~~---~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~------~--~~~~--~~--~~~~g-~pdG~~  205 (295)
T d2ghsa1         142 KLF---ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK------A--EVFI--DS--TGIKG-GMDGSV  205 (295)
T ss_dssp             EEE---EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC------C--EEEE--EC--TTSSS-EEEEEE
T ss_pred             EEe---eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccc------e--EEEe--cc--Ccccc-cccceE
Confidence            111   0112447889999955566677778899999876432111000      0  0000  00  11112 367899


Q ss_pred             EcCCCCEEEEEecCCeEEEEECCCCCCc
Q 004745          256 FSPNGEEVLLSYSGEHVYLMDVNHAGGR  283 (732)
Q Consensus       256 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~  283 (732)
                      +..+|++.++.-..+.|..||.. ++..
T Consensus       206 vD~~GnlWva~~~~g~V~~~dp~-G~~~  232 (295)
T d2ghsa1         206 CDAEGHIWNARWGEGAVDRYDTD-GNHI  232 (295)
T ss_dssp             ECTTSCEEEEEETTTEEEEECTT-CCEE
T ss_pred             EcCCCCEEeeeeCCCceEEecCC-CcEe
Confidence            99999977777778899999964 3433

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0093  Score=60.57  Aligned_cols=193  Identities=7%  Similarity=-0.027  Sum_probs=106.9

Q ss_pred             CceeEEEEcCCCCEEEEEe---------CCCcEEEEeCCCCeeEEEEc-cCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004745           20 GCVNAISWNSKGSLLISGS---------DDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVR   89 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~---------~dg~i~vWd~~~~~~~~~~~-~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~   89 (732)
                      ..+....||||+++|+...         ..+.+.|+|+.++....... ......+....|||+  |+.||-.. ++.|.
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPD--G~~iafv~-~~nl~  137 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK--GQQLIFIF-ENNIY  137 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS--TTCEEEEE-TTEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccC--CceEEEEe-cceEE
Confidence            4677889999999887763         35678999999886543221 223445667899999  47776654 67788


Q ss_pred             EEEcCCCCCCCCCCCCCCCceeeccccC---------ceeEEEEecCCCcEEEEE-eCCCcEEEEECCCCCCC-------
Q 004745           90 LFNLSRFSGRGLDDNAITPSALYQCHTR---------RVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSC-------  152 (732)
Q Consensus        90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~~p~~~~~l~s~-s~dg~i~vwd~~~~~~~-------  152 (732)
                      +.+...+......... ..-..+.+..+         .-.++.|+|++ +.||.. -.+..|..+.+......       
T Consensus       138 ~~~~~~~~~~~lt~~g-~~~~i~nG~~d~vyeee~~~~~~a~~WSPDg-k~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~  215 (465)
T d1xfda1         138 YCAHVGKQAIRVVSTG-KEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKP  215 (465)
T ss_dssp             EESSSSSCCEEEECCC-BTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEE
T ss_pred             EEecCCCceEEEeccc-CcceeeccccchhhhhhhccccceEEECCCC-CeEEEEEecccccceeecccccccccceeee
Confidence            8777653221100000 00011112111         12567899976 555554 45566766665332110       


Q ss_pred             ---CCCCCCCcccceEEeeccCCccccccCCCC----CccceEEEEecCCCCCEEEEEeC-C---CeEEEEECCCCC
Q 004745          153 ---PPAGSSHQECRNILLDLRCGAKRSLADPPK----QTLSLKSCDISSTRPHLLLVGGS-D---AFARLYDRRMLP  218 (732)
Q Consensus       153 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~tg~~-d---g~v~iwd~~~~~  218 (732)
                         .......+.....++++..+..........    ....+..+.|.|+ +++++.... +   ..|.++|..+++
T Consensus       216 ~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d-~~~~~~~~nR~q~~~~i~~~d~~tg~  291 (465)
T d1xfda1         216 YHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS-TKVAVTWLNRAQNVSILTLCDATTGV  291 (465)
T ss_dssp             EECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS-SEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             eeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCC-CeEEEEEEccccccceEEEEcCCCCc
Confidence               111122223345566766554332222221    2335788999998 555554322 2   357888888775

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.14  E-value=0.02  Score=53.25  Aligned_cols=99  Identities=10%  Similarity=0.059  Sum_probs=58.9

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE-CCC-----cEEEEEcCCCC
Q 004745           26 SWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDA-----EVRLFNLSRFS   97 (732)
Q Consensus        26 ~~s~d--g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~-~dg-----~i~vwd~~~~~   97 (732)
                      ..+||  |+.+|-.+ ++.|.+.|+.+++.. .+ ..+.+.+...+|||+  |+.|+-.. .++     .|.+.+...+.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~L-t~~~~~~~~p~~SPD--G~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KI-VSNLGVINNARFFPD--GRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EE-ECSSSEEEEEEECTT--SSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EE-ecCCCcccCEEECCC--CCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            46788  99888665 457888899988765 34 467778899999999  57777543 222     25555655432


Q ss_pred             CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEE
Q 004745           98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  134 (732)
Q Consensus        98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  134 (732)
                      ...+.    ..-..............|+|++ +.|+.
T Consensus        80 ~~~lt----~~~~~~~~~~~~~~~~~~spdg-~~l~~  111 (281)
T d1k32a2          80 IKRIT----YFSGKSTGRRMFTDVAGFDPDG-NLIIS  111 (281)
T ss_dssp             EEECC----CCCEEEETTEECSEEEEECTTC-CEEEE
T ss_pred             eEEee----ecCCCccCccccccccccCCCC-CEEEE
Confidence            21100    0000011122345678899966 55544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.12  Score=47.39  Aligned_cols=209  Identities=9%  Similarity=0.026  Sum_probs=122.8

Q ss_pred             eeeccCCceeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004745           14 ELEGHQGCVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN   92 (732)
Q Consensus        14 ~l~~h~~~V~~l~~s~dg~~lasg-~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd   92 (732)
                      .+..+...+.+++|.+..+.|.-. ..++.|+..++........+ ...-..+.++++...+ +++..+-...+.|.+.+
T Consensus        30 ~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~-~~~~~~p~~iAvD~~~-~~lY~~d~~~~~I~~~~  107 (263)
T d1npea_          30 FLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLG-RTIFWTDSQLDRIEVAK  107 (263)
T ss_dssp             EEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTT-TEEEEEETTTTEEEEEE
T ss_pred             ccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE-EeccccccEEEEeccC-CeEEEeccCCCEEEEEe
Confidence            344455567889999877766655 45678888888765554444 3334568899998764 34445555678999999


Q ss_pred             cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEE--ECCCCCCCCCCCCCCcccceEEeecc
Q 004745           93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH--DFRQGSSCPPAGSSHQECRNILLDLR  170 (732)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~  170 (732)
                      +.....          ..........+..+++.|..+.++.+-...+..+|+  ++.....            ..+..  
T Consensus       108 ~dg~~~----------~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~------------~~i~~--  163 (263)
T d1npea_         108 MDGTQR----------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------------RILAQ--  163 (263)
T ss_dssp             TTSCSC----------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC------------EEEEC--
T ss_pred             cCCceE----------EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc------------eeeee--
Confidence            875321          112222345788999999776666564333333344  4433221            01110  


Q ss_pred             CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004745          171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  250 (732)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (732)
                                 .......++++++.++++..+-...+.|...|+........+                    .+..  .
T Consensus       164 -----------~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~--------------------~~~~--~  210 (263)
T d1npea_         164 -----------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL--------------------EGLQ--Y  210 (263)
T ss_dssp             -----------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE--------------------ECCC--S
T ss_pred             -----------ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEE--------------------CCCC--C
Confidence                       011245789998874444455456788998988753211000                    1111  1


Q ss_pred             EEEEEEcCCCCEEEEEe-cCCeEEEEECCCCCCc
Q 004745          251 LTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGR  283 (732)
Q Consensus       251 i~~l~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~  283 (732)
                      ..+|++.  +.+|+... ..+.|...|..+++..
T Consensus       211 P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         211 PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM  242 (263)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cEEEEEE--CCEEEEEECCCCEEEEEECCCCccc
Confidence            3467775  44565554 5788998998876543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.58  Score=42.55  Aligned_cols=214  Identities=7%  Similarity=-0.002  Sum_probs=121.7

Q ss_pred             ccCCceeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCe---eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004745           17 GHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN   92 (732)
Q Consensus        17 ~h~~~V~~l~~s~dg~~lasg~-~dg~i~vWd~~~~~---~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd   92 (732)
                      .....+.+++|.+..+.|.-.. ..+.|+.-++....   ....+.......+.++++.+.+ +++..+-...+.|.+.+
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~-~~lY~~d~~~~~I~v~~  105 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVAD  105 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc-ceEEEEecCCCEEEeEe
Confidence            3455677899998777666554 45667766654321   1222212334557789988764 35556556678899999


Q ss_pred             cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004745           93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  171 (732)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (732)
                      +.....          .............+++.|..+.++++-. ..+.|...++.....            ..+..   
T Consensus       106 ~~g~~~----------~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~------------~~l~~---  160 (266)
T d1ijqa1         106 TKGVKR----------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT---  160 (266)
T ss_dssp             TTSSSE----------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC---
T ss_pred             cCCceE----------EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce------------ecccc---
Confidence            874321          2333344566889999996656665542 334566666544321            11110   


Q ss_pred             CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004745          172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  251 (732)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (732)
                                .......++++++.++++..+-...+.|...|+..........             .     ..... ..
T Consensus       161 ----------~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~-------------~-----~~~~~-~p  211 (266)
T d1ijqa1         161 ----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-------------D-----EKRLA-HP  211 (266)
T ss_dssp             ----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-------------C-----TTTTS-SE
T ss_pred             ----------cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEe-------------C-----CCccc-cc
Confidence                      1112457899998745455555667899999987543211000             0     00111 25


Q ss_pred             EEEEEcCCCCEEEEE-ecCCeEEEEECCCCCCcceee
Q 004745          252 THVTFSPNGEEVLLS-YSGEHVYLMDVNHAGGRAMRY  287 (732)
Q Consensus       252 ~~l~~sp~g~~l~~~-~~dg~v~iwd~~~~~~~~~~~  287 (732)
                      .++++.  +.+|+.+ ..++.|+..+..++.....+.
T Consensus       212 ~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         212 FSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            567776  3455555 457899888888876555444

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.61  E-value=0.57  Score=42.53  Aligned_cols=182  Identities=8%  Similarity=0.036  Sum_probs=105.5

Q ss_pred             CcEEEEeCCCCee-----EEEEccCCCcCeEEEEEecCCCCCEEEEE-ECCCcEEEEEcCCCCCCCCCCCCCCCceeecc
Q 004745           41 THINVWSYSSRKL-----LHSIETGHSANVFCTKFVPETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQC  114 (732)
Q Consensus        41 g~i~vWd~~~~~~-----~~~~~~~h~~~V~~~~~s~~~~g~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  114 (732)
                      +.|+-.+++....     ...+ ..+...+.+++|.+..  +.|+-. ..++.|+..++.....          ......
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~-~~~~~~~~~ld~D~~~--~~iywsd~~~~~I~~~~l~g~~~----------~~v~~~   76 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFL-HIPAKVIIGLAFDCVD--KVVYWTDISEPSIGRASLHGGEP----------TTIIRQ   76 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEE-EEEEEEEEEEEEETTT--TEEEEEETTTTEEEEEESSSCCC----------EEEECT
T ss_pred             CeEEEEECCCcccccccccccc-ccCCCcEEEEEEEeCC--CEEEEEECCCCeEEEEEcccCCc----------EEEEEe
Confidence            4676666653321     1112 2344568889999874  555544 4567788888875321          122222


Q ss_pred             ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecC
Q 004745          115 HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS  194 (732)
Q Consensus       115 h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  194 (732)
                      ....+.++++...++++.++-...+.|.+.++......            .+..             ........++++|
T Consensus        77 ~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~------------~l~~-------------~~l~~p~~l~vdp  131 (263)
T d1npea_          77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR------------VLFD-------------TGLVNPRGIVTDP  131 (263)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------------EEEC-------------SSCSSEEEEEEET
T ss_pred             ccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE------------EEec-------------ccccCCcEEEEec
Confidence            23568899998766566667677788999998654311            1110             0112567899999


Q ss_pred             CCCCEEEEEeCCCeEEEE--ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe-cCCe
Q 004745          195 TRPHLLLVGGSDAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEH  271 (732)
Q Consensus       195 ~~~~~l~tg~~dg~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-~dg~  271 (732)
                      ..+.++.+-...+..+|+  ++...... .+             .      . ..-...+.+++++.++.|+.+. ..+.
T Consensus       132 ~~g~ly~t~~~~~~~~I~r~~~dG~~~~-~i-------------~------~-~~~~~P~glaiD~~~~~lYw~d~~~~~  190 (263)
T d1npea_         132 VRGNLYWTDWNRDNPKIETSHMDGTNRR-IL-------------A------Q-DNLGLPNGLTFDAFSSQLCWVDAGTHR  190 (263)
T ss_dssp             TTTEEEEEECCSSSCEEEEEETTSCCCE-EE-------------E------C-TTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ccCcEEEeecCCCCcEEEEecCCCCCce-ee-------------e------e-ecccccceEEEeecCcEEEEEeCCCCE
Confidence            866555554333333444  44432211 10             0      0 0111367899999888886664 4788


Q ss_pred             EEEEECCCCC
Q 004745          272 VYLMDVNHAG  281 (732)
Q Consensus       272 v~iwd~~~~~  281 (732)
                      |...++....
T Consensus       191 I~~~~~~g~~  200 (263)
T d1npea_         191 AECLNPAQPG  200 (263)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEECCCCC
Confidence            9999987643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.89  Score=41.22  Aligned_cols=185  Identities=11%  Similarity=0.052  Sum_probs=108.0

Q ss_pred             CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEE-ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCce
Q 004745           41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV  119 (732)
Q Consensus        41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v  119 (732)
                      ..|+-.++.+.+....+  .....+.+++|++..  +.|+-. ...+.|.-.++.......      ............+
T Consensus        10 ~~I~~~~l~~~~~~~~~--~~~~~~~~id~d~~~--~~lYw~D~~~~~I~~~~l~~~~~~~------~~~~~~~~~~~~p   79 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQAP   79 (266)
T ss_dssp             SSEEEEETTSCCCEEEE--CSCSSEEEEEEETTT--TEEEEEETTTTEEEEEEC--------------CEEEECSSCSCC
T ss_pred             CeEEEEECCCCcceeee--CCCCceEEEEEEeCC--CEEEEEECCCCEEEEEEecCCCCCc------ceEEEEeCCCCCc
Confidence            35888898876554444  345567899999874  555544 356667766665321110      0112222233557


Q ss_pred             eEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCE
Q 004745          120 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL  199 (732)
Q Consensus       120 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  199 (732)
                      .++++.+.++++.++-...+.|.+.++......            .+..             ........++++|..+.+
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~------------~~~~-------------~~~~~P~~l~vd~~~g~l  134 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK------------TLFR-------------ENGSKPRAIVVDPVHGFM  134 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEE------------EEEE-------------CTTCCEEEEEEETTTTEE
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCceEE------------EEEc-------------CCCCCcceEEEEcccCeE
Confidence            789998767677777777788999998654310            1110             111246788898875655


Q ss_pred             EEEEe-CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe-cCCeEEEEEC
Q 004745          200 LLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDV  277 (732)
Q Consensus       200 l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-~dg~v~iwd~  277 (732)
                      +.+-. ..+.|.-.++...... .+             .      . ..-...+.+++++.++.|+.+. ..+.|...++
T Consensus       135 y~~~~~~~~~I~r~~~dGs~~~-~l-------------~------~-~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~  193 (266)
T d1ijqa1         135 YWTDWGTPAKIKKGGLNGVDIY-SL-------------V------T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  193 (266)
T ss_dssp             EEEECSSSCEEEEEETTSCCEE-EE-------------E------C-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeccCCCcceeEeccCCCcee-cc-------------c------c-cccceeeEEEeeccccEEEEecCCcCEEEEEEC
Confidence            55542 3345666666543211 11             0      0 1111368899999888777774 4689999998


Q ss_pred             CCCC
Q 004745          278 NHAG  281 (732)
Q Consensus       278 ~~~~  281 (732)
                      ....
T Consensus       194 dG~~  197 (266)
T d1ijqa1         194 NGGN  197 (266)
T ss_dssp             TSCS
T ss_pred             CCCC
Confidence            7644

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.23  E-value=0.04  Score=53.23  Aligned_cols=234  Identities=12%  Similarity=0.123  Sum_probs=117.5

Q ss_pred             EEEEcC---CCCEEEEEe-CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC-------------
Q 004745           24 AISWNS---KGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-------------   86 (732)
Q Consensus        24 ~l~~s~---dg~~lasg~-~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg-------------   86 (732)
                      .+.+..   ||++|+... .++.|-+-|+.+.++...+.......+..+...++.+-.+++..+.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            566654   899888876 678999999999998775534556667777765543236777766633             


Q ss_pred             -----cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC---------------cEEEEEC
Q 004745           87 -----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---------------TLRQHDF  146 (732)
Q Consensus        87 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg---------------~i~vwd~  146 (732)
                           .+.+.|..+.+.          ..... -......+.++|++ +++++.+.+.               .+.+++.
T Consensus       169 ~~y~~~~t~ID~~tm~V----------~~QV~-V~g~ld~~~~s~dG-K~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~  236 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEV----------AWQVL-VSGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI  236 (459)
T ss_dssp             G-EEEEEEEEETTTTEE----------EEEEE-ESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH
T ss_pred             hhcceEEEEEecCCceE----------EEEee-eCCChhccccCCCC-CEEEEEeccccCCcchhhcccccceEEEEech
Confidence                 245566664321          11111 12345678889966 5555544321               1233332


Q ss_pred             CCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccC
Q 004745          147 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  226 (732)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~  226 (732)
                      ...+..........-....+++........+.....-......+.++||+...++++..+.++.|+|++....+.  ...
T Consensus       237 ~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~--~~~  314 (459)
T d1fwxa2         237 AEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--YEN  314 (459)
T ss_dssp             HHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--HSC
T ss_pred             HHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhh--ccc
Confidence            111100000000000001122221100000000000011345789999944444555568999999997543211  000


Q ss_pred             CCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004745          227 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  279 (732)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~  279 (732)
                      ..+..++..        +..-+.....-+|+..|.-..+---|.+|--|++..
T Consensus       315 ~~~~~~~~~--------e~elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         315 ADPRSAVVA--------EPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             C-GGGGEEE--------CCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CCccccEEe--------ecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            000111110        001111245678998885334444599999999865

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.22  E-value=0.0083  Score=56.00  Aligned_cols=96  Identities=8%  Similarity=0.104  Sum_probs=59.2

Q ss_pred             cccCCC--CCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEec----CC--CcEEEEEcC
Q 004745          555 TVDANG--SSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGS----DD--GRWFIWEKQ  626 (732)
Q Consensus       555 ~~~s~d--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs----~D--g~i~iWd~~  626 (732)
                      +..|||  |+.+|..+ .  ..+|-.+......+.+..+........    |||||++||-.+    .+  ..|.+++..
T Consensus         4 ~~~sPdi~G~~v~f~~-~--~dl~~~d~~~g~~~~Lt~~~~~~~~p~----~SPDG~~iaf~~~~~~~~~~~~i~~~~~~   76 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVC-C--DDLWEHDLKSGSTRKIVSNLGVINNAR----FFPDGRKIAIRVMRGSSLNTADLYFYNGE   76 (281)
T ss_dssp             CCEEEEEETTEEEEEE-T--TEEEEEETTTCCEEEEECSSSEEEEEE----ECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred             cccCCCCCCCEEEEEe-C--CcEEEEECCCCCEEEEecCCCcccCEE----ECCCCCEEEEEEeeCCCCCceEEEEEEec
Confidence            456888  88888663 2  246643222234455655554543344    699999998542    22  247788888


Q ss_pred             cccEEEEEe------cCcccEEEEeecCCCCeEEEec
Q 004745          627 TGRLIKMLL------GDEAVVNCVQCHPFDCVVATSG  657 (732)
Q Consensus       627 tg~~~~~l~------gH~~~V~~v~fsp~~~~l~S~s  657 (732)
                      +|+......      +....+...+|+|+|+.|+...
T Consensus        77 ~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          77 NGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             TTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             CCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            887654322      1234567889999999877643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.04  E-value=0.22  Score=48.31  Aligned_cols=77  Identities=13%  Similarity=0.235  Sum_probs=50.7

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCC-CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC------CcEEE
Q 004745           18 HQGCVNAISWNSKGSLLISGSDD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRL   90 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg~~d-g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d------g~i~v   90 (732)
                      |..-....++.++|++++.|+.+ ..+.+||..+......-.......-...+..++  |++++.|+.+      ..+.+
T Consensus        74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d--G~v~v~GG~~~~~~~~~~v~~  151 (387)
T d1k3ia3          74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD--GRVFTIGGSWSGGVFEKNGEV  151 (387)
T ss_dssp             CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT--SCEEEECCCCCSSSCCCCEEE
T ss_pred             cccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecC--Cceeeeccccccccccceeee
Confidence            33334567888999999988754 689999998876543221112222345666777  5788887643      35899


Q ss_pred             EEcCCC
Q 004745           91 FNLSRF   96 (732)
Q Consensus        91 wd~~~~   96 (732)
                      ||+.+.
T Consensus       152 yd~~~~  157 (387)
T d1k3ia3         152 YSPSSK  157 (387)
T ss_dssp             EETTTT
T ss_pred             ecCCCC
Confidence            998864

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.61  E-value=2.5  Score=38.23  Aligned_cols=207  Identities=11%  Similarity=0.152  Sum_probs=121.5

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCC
Q 004745           25 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  104 (732)
Q Consensus        25 l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~  104 (732)
                      .-.+|..+.||-=+ ..++.|+|+++.+.++.+  .....|.--.|..+   +.|+-.. +..|+.|+++...       
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~--~~~e~VvfWkWis~---~~L~lVT-~taVYHW~~~g~s-------  133 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH--TMTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGES-------  133 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE--ECSSCCCEEEESSS---SEEEEEC-SSEEEEEESSSSC-------
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceE--EcCCCcEEEEecCC---CEEEEEc-CCceEEEcccCCC-------
Confidence            44678888777655 468999999999999887  34557777788776   5666654 5679999996422       


Q ss_pred             CCCCceeecccc----CceeEEEEecCCCcEEEEEe---C----CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004745          105 AITPSALYQCHT----RRVKKLAVEVGNPHVVWSAS---E----DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  173 (732)
Q Consensus       105 ~~~~~~~~~~h~----~~v~~l~~~p~~~~~l~s~s---~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (732)
                        .|.+.+..|.    ..|..-..+++. +.++..+   .    .|.+.+|..+.....  ..                 
T Consensus       134 --~P~k~fdR~~~L~~~QIInY~~d~~~-kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ--~i-----------------  191 (327)
T d1utca2         134 --QPVKMFDRHSSLAGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PI-----------------  191 (327)
T ss_dssp             --CCEEEEECCGGGTTCEEEEEEECTTS-CEEEEEEEEEETTEEEEEEEEEETTTTEEE--EE-----------------
T ss_pred             --CchhhhhhcccccCceEEEEEECCCC-CEEEEEeEecCCCceeEEEEEEEeccCcCc--cc-----------------
Confidence              3455555443    456677777754 4443322   2    256778887665311  11                 


Q ss_pred             cccccCCCCCccceEEEEecCC--CCCEEEEE---eCCCeEEEEECCCCCC-CcccccCCCCCCccccccccccccCCCc
Q 004745          174 KRSLADPPKQTLSLKSCDISST--RPHLLLVG---GSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRS  247 (732)
Q Consensus       174 ~~~~~~~~~~~~~v~~i~~~~~--~~~~l~tg---~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (732)
                             .+|......+.+..+  ...+++-+   ...+.++|.++..... ...+..     ..+..+.|    +....
T Consensus       192 -------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~k-----k~vdi~fp----pea~~  255 (327)
T d1utca2         192 -------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK-----KAVDVFFP----PEAQN  255 (327)
T ss_dssp             -------CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCC-----EEEECCCC----TTCTT
T ss_pred             -------cceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcc-----eeEEEECC----ccccC
Confidence                   122222222222111  01122221   2346899999876421 111110     00111111    12223


Q ss_pred             cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcc
Q 004745          248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA  284 (732)
Q Consensus       248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~  284 (732)
                      +. ..++..++.-..++.-+.-|.|++||+.++....
T Consensus       256 DF-Pvamqvs~kygiiyviTK~G~i~lyDleTgt~i~  291 (327)
T d1utca2         256 DF-PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  291 (327)
T ss_dssp             CC-EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             Cc-EEEEEeeccCCEEEEEecCcEEEEEEcccccEEE
Confidence            43 5578899988899999999999999999976543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.38  E-value=4.8  Score=40.82  Aligned_cols=51  Identities=8%  Similarity=0.011  Sum_probs=36.1

Q ss_pred             CCCEEEEecCCCcEEEEEcCcccEEEEEecCc-ccEEEEeecCCCC-eEEEec
Q 004745          607 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDC-VVATSG  657 (732)
Q Consensus       607 dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~-~~V~~v~fsp~~~-~l~S~s  657 (732)
                      .+.+|+.|+.||.++.+|.+||+.+.+++--. ..-.-+.|..||+ |++...
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEe
Confidence            46788889999999999999999998775421 1111244556887 665544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.33  E-value=5.3  Score=38.70  Aligned_cols=103  Identities=10%  Similarity=0.076  Sum_probs=61.0

Q ss_pred             cCCceeEEEEcCCCCEEEEE-eC----CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-------
Q 004745           18 HQGCVNAISWNSKGSLLISG-SD----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------   85 (732)
Q Consensus        18 h~~~V~~l~~s~dg~~lasg-~~----dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-------   85 (732)
                      +.-.+..+++|||+++||-+ +.    -..|++.|+.+++.+.....  ......+.|++++  +.|+-...+       
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~D~--~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDG--KGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTS--SEEEEEECCCCSSCCS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcCCC--CEEEEEEeccccCccc
Confidence            33345567889999988854 22    34799999999987753311  1223568899994  666544322       


Q ss_pred             ---------CcEEEEEcCCCCCCCCCCCCCCCceeecc--ccCceeEEEEecCCCcEEE
Q 004745           86 ---------AEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVKKLAVEVGNPHVVW  133 (732)
Q Consensus        86 ---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~  133 (732)
                               ..|..|.+.+.....        ...+..  ....+..+..++++ ++++
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~~d--------~~v~~e~d~~~~~~~~~~s~d~-~~l~  248 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQSED--------ILCAEFPDEPKWMGGAELSDDG-RYVL  248 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGC--------EEEECCTTCTTCEEEEEECTTS-CEEE
T ss_pred             ccccccCCcceEEEEECCCCcccc--------ccccccccCCceEEeeeccCCc-ceee
Confidence                     247777777643221        223332  22345666777755 5543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.54  E-value=3.6  Score=38.44  Aligned_cols=165  Identities=11%  Similarity=0.017  Sum_probs=84.5

Q ss_pred             ceeEEEEcCCCCEEEEEeC------------CCcEEEEeCCCCeeEEEEcc--CC-----CcCeEEEEEecCCCCC-EEE
Q 004745           21 CVNAISWNSKGSLLISGSD------------DTHINVWSYSSRKLLHSIET--GH-----SANVFCTKFVPETSDE-LVV   80 (732)
Q Consensus        21 ~V~~l~~s~dg~~lasg~~------------dg~i~vWd~~~~~~~~~~~~--~h-----~~~V~~~~~s~~~~g~-~l~   80 (732)
                      +--.|+..|+|..+++++.            .|.|.++|+.+.+.......  +.     .-....+....+.+|. +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            4456888999987776542            48899999876543221101  11     1123455543322233 455


Q ss_pred             EEE---CCCcEEEEEcCCCCCCCCCCCCCCCceeec-cccCceeEEEEecCCCcEEEEEe---CC------------CcE
Q 004745           81 SGA---GDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSAS---ED------------GTL  141 (732)
Q Consensus        81 s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s---~d------------g~i  141 (732)
                      ...   ...+|.+|++.......      ..+.... ......+++++..++ .+++|-.   .+            +..
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l------~~~~~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g  188 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSL------LHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWS  188 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEE------EEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCE
T ss_pred             EEeccCCCceeEEEEEeCCCCeE------EEEeecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCce
Confidence            543   35678888876432211      1111221 112346777777644 5555521   00            112


Q ss_pred             EEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004745          142 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  218 (732)
Q Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~  218 (732)
                      .+|....++                       ...+.   ......+.|+++|++..++++-+..+.|++|++....
T Consensus       189 ~v~~~~~~~-----------------------~~~~~---~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         189 FVTYYSPND-----------------------VRVVA---EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             EEEEECSSC-----------------------EEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             eEEEEcCCc-----------------------eEEEc---CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            222222111                       10110   1122568899999955555666778899999987543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=90.15  E-value=1.9  Score=41.18  Aligned_cols=119  Identities=16%  Similarity=0.035  Sum_probs=72.0

Q ss_pred             CceeEEEEcCCCCEEEEEeCCC-----------cEEEEeCCCCeeEE--EEccCCCcCeEEEEEecCCCCCEEEEEECC-
Q 004745           20 GCVNAISWNSKGSLLISGSDDT-----------HINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGD-   85 (732)
Q Consensus        20 ~~V~~l~~s~dg~~lasg~~dg-----------~i~vWd~~~~~~~~--~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-   85 (732)
                      .++.......+|+.++.|+.+.           .+.+||+.+++...  .....|.....+..+.++  |.+++.|+.+ 
T Consensus        20 ~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~--g~i~v~Gg~~~   97 (387)
T d1k3ia3          20 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN--GQIVVTGGNDA   97 (387)
T ss_dssp             CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT--SCEEEECSSST
T ss_pred             cccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecC--CcEEEeecCCC
Confidence            3444555667889888887531           37799999876432  222344444456678888  5888887655 


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC------CcEEEEECCCCC
Q 004745           86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGS  150 (732)
Q Consensus        86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~~~  150 (732)
                      ..+.+||..+.....        ...+... ..-...+..++ +++++.++.+      ..+.+||..+.+
T Consensus        98 ~~~~~yd~~~~~w~~--------~~~~~~~-r~~~~~~~~~d-G~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          98 KKTSLYDSSSDSWIP--------GPDMQVA-RGYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TCEEEEEGGGTEEEE--------CCCCSSC-CSSCEEEECTT-SCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cceeEecCccCcccc--------ccccccc-ccccceeeecC-CceeeeccccccccccceeeeecCCCCc
Confidence            579999998643211        1111111 11234555564 4777777643      358899987764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.84  E-value=4.6  Score=38.49  Aligned_cols=189  Identities=10%  Similarity=0.047  Sum_probs=103.1

Q ss_pred             hccccEeeec-cCCceeEEEEcC--CCCEEEEEeCCC------------------cEEEEeCCCCeeEEEEccCCCcCeE
Q 004745            8 RLSQERELEG-HQGCVNAISWNS--KGSLLISGSDDT------------------HINVWSYSSRKLLHSIETGHSANVF   66 (732)
Q Consensus         8 ~~~~~~~l~~-h~~~V~~l~~s~--dg~~lasg~~dg------------------~i~vWd~~~~~~~~~~~~~h~~~V~   66 (732)
                      .++..+.+.- ....+..++..+  +..+++.++.+.                  .+.++|..+++....+.  -.....
T Consensus       119 ~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~--V~g~ld  196 (459)
T d1fwxa2         119 VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL--VSGNLD  196 (459)
T ss_dssp             TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEE--ESSCCC
T ss_pred             ceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEee--eCCChh
Confidence            4454444433 345666677655  445787776532                  36778999998887773  234567


Q ss_pred             EEEEecCCCCCEEEEEECCC---------------cEEEEEcCCC-------C-----CC-CCCC---CCCCCceeeccc
Q 004745           67 CTKFVPETSDELVVSGAGDA---------------EVRLFNLSRF-------S-----GR-GLDD---NAITPSALYQCH  115 (732)
Q Consensus        67 ~~~~s~~~~g~~l~s~~~dg---------------~i~vwd~~~~-------~-----~~-~~~~---~~~~~~~~~~~h  115 (732)
                      .++++++  |+++++.+.+.               .+.+++....       +     +. ....   .....+..+. -
T Consensus       197 ~~~~s~d--GK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-V  273 (459)
T d1fwxa2         197 NCDADYE--GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-I  273 (459)
T ss_dssp             CEEECSS--SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEE-E
T ss_pred             ccccCCC--CCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEe-c
Confidence            8999999  57877766432               1334443210       0     00 0000   0001111121 2


Q ss_pred             cCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004745          116 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  195 (732)
Q Consensus       116 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  195 (732)
                      ......+.++|++..+++++..+.++.++|+++-.....   ........+          ...+.-.. .-...+|+..
T Consensus       274 pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~---~~~~~~~~~----------~~e~elgl-gPLht~fd~~  339 (459)
T d1fwxa2         274 ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY---ENADPRSAV----------VAEPELGL-GPLHTAFDGR  339 (459)
T ss_dssp             ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH---SCC-GGGGE----------EECCBCCS-CEEEEEECTT
T ss_pred             CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhc---ccCCccccE----------EeecccCc-CccccccCCC
Confidence            344667899998755666667789999999975331100   000000001          01111111 2345678887


Q ss_pred             CCCEEEEEeCCCeEEEEECCC
Q 004745          196 RPHLLLVGGSDAFARLYDRRM  216 (732)
Q Consensus       196 ~~~~l~tg~~dg~v~iwd~~~  216 (732)
                       |+-..+-.-|..|.-|++..
T Consensus       340 -g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         340 -GNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             -SEEEEEETTTTEEEEEEHHH
T ss_pred             -ceEEEEeeccceEEEEecch
Confidence             66666667899999999853

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.95  E-value=20  Score=34.61  Aligned_cols=64  Identities=11%  Similarity=0.187  Sum_probs=42.8

Q ss_pred             ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE--EEEcc-----CCCcCeEEEEEecC
Q 004745            9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIET-----GHSANVFCTKFVPE   73 (732)
Q Consensus         9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~--~~~~~-----~h~~~V~~~~~s~~   73 (732)
                      ++......+- ..-++|+|.|||++|++--..|.|++++..+++..  ..+..     .-+.....|+|+|+
T Consensus        17 f~~~~ia~~L-~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          17 FDKKVILSNL-NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SCEEEEECCC-SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             cEEEEEECCC-CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3333334443 45669999999998887655799999998776543  22211     12356789999995

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=83.01  E-value=18  Score=33.45  Aligned_cols=212  Identities=9%  Similarity=0.100  Sum_probs=109.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEec----CCCCCEEEEEE-CC---CcEEEEEcCCCCCCCC
Q 004745           30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP----ETSDELVVSGA-GD---AEVRLFNLSRFSGRGL  101 (732)
Q Consensus        30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~----~~~g~~l~s~~-~d---g~i~vwd~~~~~~~~~  101 (732)
                      +..+++....++-|.+||+. |+.+..+.   .+.++.+..-.    .....-|+.++ .+   .+|.+|.+........
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            45677777777779999985 88877662   34566555432    21112344444 22   3588888763222110


Q ss_pred             CCCCCCCceeeccccCceeEEEE--ecCCCc-EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004745          102 DDNAITPSALYQCHTRRVKKLAV--EVGNPH-VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  178 (732)
Q Consensus       102 ~~~~~~~~~~~~~h~~~v~~l~~--~p~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (732)
                      ...  .+......-...+..+++  +|.++. +++....+|.+..|.+......      .. ....+..+.        
T Consensus       115 ~~~--~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g------~v-~~~lvr~f~--------  177 (353)
T d1h6la_         115 SIT--DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNG------YI-SGKKVRAFK--------  177 (353)
T ss_dssp             ECS--CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS------SE-EEEEEEEEE--------
T ss_pred             ccc--ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCC------ce-eeEeeeccC--------
Confidence            000  000001111234667776  565444 5566777899999987543211      00 001111111        


Q ss_pred             CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004745          179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  258 (732)
Q Consensus       179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  258 (732)
                          ....+..|.+... ...|..+-.+..|..+++........        ..+....      .++-...+-.|++-.
T Consensus       178 ----~~~q~EGCVvDde-~~~LyisEE~~Giw~~~a~~~~~~~~--------~~i~~~~------g~~l~~D~EGlaiy~  238 (353)
T d1h6la_         178 ----MNSQTEGMAADDE-YGSLYIAEEDEAIWKFSAEPDGGSNG--------TVIDRAD------GRHLTPDIEGLTIYY  238 (353)
T ss_dssp             ----CSSCEEEEEEETT-TTEEEEEETTTEEEEEESSTTSCSCC--------EEEEECS------SSSCCSCEEEEEEEE
T ss_pred             ----CCCccceEEEeCC-CCcEEEecCccceEEEEeccCCCccc--------eeeeccc------CccccCCccccEEEE
Confidence                1126789999988 45777777776666666542211000        0000000      111112366666543


Q ss_pred             --CCC-EEEEEec-CCeEEEEECCCCC
Q 004745          259 --NGE-EVLLSYS-GEHVYLMDVNHAG  281 (732)
Q Consensus       259 --~g~-~l~~~~~-dg~v~iwd~~~~~  281 (732)
                        ++. +|+++++ +++..|||...+.
T Consensus       239 ~~~~~GylivSsQG~n~f~vydr~~~~  265 (353)
T d1h6la_         239 AADGKGYLLASSQGNSSYAIYERQGQN  265 (353)
T ss_dssp             CGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             cCCCCeEEEEEcCCCCeEEEEecCCCc
Confidence              333 7777766 7899999998753

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.83  E-value=3.7  Score=41.72  Aligned_cols=27  Identities=15%  Similarity=0.110  Sum_probs=23.1

Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCccc
Q 004745          197 PHLLLVGGSDAFARLYDRRMLPPLTSC  223 (732)
Q Consensus       197 ~~~l~tg~~dg~v~iwd~~~~~~~~~~  223 (732)
                      +.++++|+.|+.++.+|.++++.+-++
T Consensus       475 gglVf~G~~dg~l~A~Da~tGe~lW~~  501 (571)
T d2ad6a1         475 GGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEE
Confidence            458888999999999999999877554

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.12  E-value=21  Score=35.88  Aligned_cols=25  Identities=12%  Similarity=0.023  Sum_probs=21.4

Q ss_pred             CCCEEEEEecCCeEEEEECCCCCCc
Q 004745          259 NGEEVLLSYSGEHVYLMDVNHAGGR  283 (732)
Q Consensus       259 ~g~~l~~~~~dg~v~iwd~~~~~~~  283 (732)
                      .|.+++.|+.||.++.+|..+++..
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~L  507 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLL  507 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEe
Confidence            4678888999999999999998743