Query 004746
Match_columns 732
No_of_seqs 623 out of 3889
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 12:13:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1145 Mitochondrial translat 100.0 2.4E-54 5.3E-59 474.4 27.6 320 409-732 65-391 (683)
2 PRK05306 infB translation init 100.0 2.3E-48 4.9E-53 454.7 42.3 308 409-732 220-527 (787)
3 CHL00189 infB translation init 100.0 2.7E-47 5.8E-52 442.7 34.4 323 409-732 163-485 (742)
4 TIGR00487 IF-2 translation ini 100.0 4.4E-47 9.6E-52 433.9 35.2 317 409-732 9-325 (587)
5 COG0532 InfB Translation initi 100.0 5.7E-47 1.2E-51 419.3 25.5 244 488-732 2-245 (509)
6 TIGR00491 aIF-2 translation in 100.0 5.9E-34 1.3E-38 326.0 25.9 243 489-731 2-308 (590)
7 PRK04004 translation initiatio 100.0 3.4E-33 7.3E-38 320.1 26.2 246 487-732 2-311 (586)
8 PRK14845 translation initiatio 100.0 1.6E-30 3.6E-35 310.8 25.7 229 504-732 474-766 (1049)
9 TIGR00475 selB selenocysteine- 100.0 1.2E-29 2.6E-34 290.9 24.7 230 492-732 1-241 (581)
10 PRK12317 elongation factor 1-a 100.0 6.5E-29 1.4E-33 274.4 22.2 232 489-732 4-290 (425)
11 PRK10512 selenocysteinyl-tRNA- 100.0 1.7E-28 3.6E-33 282.9 25.5 231 492-732 1-239 (614)
12 PRK12736 elongation factor Tu; 100.0 8.1E-28 1.7E-32 264.0 24.9 234 488-732 9-277 (394)
13 TIGR00483 EF-1_alpha translati 100.0 7.9E-28 1.7E-32 266.0 22.2 233 488-732 4-292 (426)
14 PRK12735 elongation factor Tu; 100.0 1.6E-27 3.5E-32 261.8 23.4 233 489-732 10-279 (396)
15 PTZ00141 elongation factor 1- 100.0 1.2E-27 2.7E-32 266.7 22.0 232 489-732 5-298 (446)
16 TIGR00485 EF-Tu translation el 100.0 2.7E-27 5.9E-32 259.6 23.4 233 489-732 10-277 (394)
17 CHL00071 tufA elongation facto 100.0 4.3E-27 9.3E-32 259.4 24.1 233 489-732 10-287 (409)
18 PLN03127 Elongation factor Tu; 100.0 4.6E-27 1E-31 262.2 23.7 234 488-732 58-330 (447)
19 PLN00043 elongation factor 1-a 100.0 4.8E-27 1E-31 262.1 23.8 232 489-732 5-298 (447)
20 PTZ00327 eukaryotic translatio 100.0 2E-27 4.4E-32 265.6 20.7 237 491-732 34-328 (460)
21 TIGR01393 lepA GTP-binding pro 100.0 8.8E-27 1.9E-31 267.9 26.3 232 491-730 3-255 (595)
22 TIGR01394 TypA_BipA GTP-bindin 100.0 5.4E-27 1.2E-31 269.4 24.5 233 492-732 2-272 (594)
23 PRK00049 elongation factor Tu; 100.0 9.3E-27 2E-31 255.9 24.2 233 489-732 10-279 (396)
24 TIGR03680 eif2g_arch translati 99.9 8.9E-27 1.9E-31 256.7 22.7 237 491-732 4-290 (406)
25 PLN03126 Elongation factor Tu; 99.9 1.1E-26 2.4E-31 260.9 23.4 234 488-732 78-356 (478)
26 PRK10218 GTP-binding protein; 99.9 2.1E-26 4.5E-31 264.8 25.6 238 489-732 3-276 (607)
27 PRK05433 GTP-binding protein L 99.9 3.3E-26 7.1E-31 263.4 26.4 233 490-730 6-259 (600)
28 PRK04000 translation initiatio 99.9 3.6E-26 7.7E-31 252.5 22.8 238 490-732 8-295 (411)
29 KOG0462 Elongation factor-type 99.9 2.3E-26 5E-31 254.5 20.8 231 489-728 58-308 (650)
30 COG5256 TEF1 Translation elong 99.9 3.3E-26 7.1E-31 248.2 20.8 231 490-732 6-296 (428)
31 TIGR02034 CysN sulfate adenyly 99.9 6.4E-26 1.4E-30 250.0 21.0 227 492-732 1-282 (406)
32 COG0481 LepA Membrane GTPase L 99.9 2.4E-25 5.2E-30 243.4 22.3 207 489-703 7-230 (603)
33 COG3276 SelB Selenocysteine-sp 99.9 2.7E-25 5.8E-30 242.5 20.7 227 493-732 2-236 (447)
34 COG1217 TypA Predicted membran 99.9 6.4E-25 1.4E-29 239.5 22.4 235 490-732 4-276 (603)
35 PRK05124 cysN sulfate adenylyl 99.9 5.7E-25 1.2E-29 247.1 21.0 238 489-732 25-310 (474)
36 PRK05506 bifunctional sulfate 99.9 2.2E-24 4.8E-29 249.7 21.0 229 490-732 23-306 (632)
37 COG0486 ThdF Predicted GTPase 99.9 1.6E-25 3.5E-30 246.3 9.7 226 411-658 143-377 (454)
38 KOG1144 Translation initiation 99.9 9.1E-25 2E-29 246.7 15.9 226 489-714 473-749 (1064)
39 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 9.8E-24 2.1E-28 199.6 18.0 164 492-656 1-165 (168)
40 PRK00741 prfC peptide chain re 99.9 1.1E-22 2.3E-27 231.3 21.4 240 489-732 8-364 (526)
41 PRK12739 elongation factor G; 99.9 1.7E-22 3.6E-27 236.3 23.7 240 489-732 6-375 (691)
42 TIGR00484 EF-G translation elo 99.9 3E-22 6.4E-27 234.2 24.7 240 489-732 8-376 (689)
43 PRK13351 elongation factor G; 99.9 3.1E-22 6.7E-27 233.8 23.8 239 490-732 7-374 (687)
44 PF00009 GTP_EFTU: Elongation 99.9 1.2E-23 2.7E-28 207.0 9.7 164 490-655 2-185 (188)
45 COG2895 CysN GTPases - Sulfate 99.9 7.1E-23 1.5E-27 218.1 15.6 229 490-732 5-288 (431)
46 TIGR00503 prfC peptide chain r 99.9 5.7E-22 1.2E-26 225.4 24.0 240 489-732 9-365 (527)
47 PRK00007 elongation factor G; 99.9 6.4E-22 1.4E-26 231.6 23.9 240 489-732 8-378 (693)
48 cd04171 SelB SelB subfamily. 99.9 6.4E-22 1.4E-26 185.7 16.5 157 493-654 2-163 (164)
49 cd01890 LepA LepA subfamily. 99.9 9.2E-22 2E-26 189.0 17.3 158 492-655 1-175 (179)
50 PRK05291 trmE tRNA modificatio 99.9 9.8E-23 2.1E-27 227.7 11.5 220 411-656 141-369 (449)
51 PRK07560 elongation factor EF- 99.9 1.6E-21 3.4E-26 229.5 20.1 244 489-732 18-359 (731)
52 cd04124 RabL2 RabL2 subfamily. 99.9 2.5E-21 5.3E-26 184.9 17.3 154 492-656 1-157 (161)
53 COG0050 TufB GTPases - transla 99.9 8.7E-22 1.9E-26 205.7 14.8 230 491-731 12-276 (394)
54 PRK12740 elongation factor G; 99.9 4.4E-21 9.5E-26 223.4 22.2 232 497-732 1-357 (668)
55 cd04119 RJL RJL (RabJ-Like) su 99.9 3.9E-21 8.4E-26 180.7 16.2 153 492-655 1-165 (168)
56 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.4E-21 3.1E-26 218.0 14.7 218 411-656 133-359 (442)
57 TIGR00490 aEF-2 translation el 99.9 4E-21 8.7E-26 225.7 19.2 244 489-732 17-358 (720)
58 cd01889 SelB_euk SelB subfamil 99.9 2.7E-21 5.8E-26 190.6 14.3 166 492-657 1-186 (192)
59 KOG0460 Mitochondrial translat 99.9 3.6E-21 7.7E-26 204.2 15.8 230 491-731 54-320 (449)
60 cd04138 H_N_K_Ras_like H-Ras/N 99.9 5.7E-21 1.2E-25 178.6 15.4 151 492-654 2-159 (162)
61 KOG0458 Elongation factor 1 al 99.9 7.3E-21 1.6E-25 212.9 19.0 234 490-732 176-470 (603)
62 cd04145 M_R_Ras_like M-Ras/R-R 99.9 7.9E-21 1.7E-25 179.1 16.5 152 492-655 3-162 (164)
63 cd04136 Rap_like Rap-like subf 99.9 6E-21 1.3E-25 179.7 15.3 153 492-655 2-161 (163)
64 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.5E-20 3.2E-25 186.6 18.4 155 492-656 1-167 (201)
65 COG5257 GCD11 Translation init 99.9 1.1E-20 2.4E-25 199.5 18.0 237 490-731 9-295 (415)
66 cd00877 Ran Ran (Ras-related n 99.9 1.4E-20 3E-25 181.5 17.2 155 492-656 1-158 (166)
67 smart00173 RAS Ras subfamily o 99.9 9.6E-21 2.1E-25 179.2 15.6 153 492-655 1-160 (164)
68 KOG0084 GTPase Rab1/YPT1, smal 99.9 7.4E-21 1.6E-25 189.5 15.4 158 489-657 7-172 (205)
69 cd01865 Rab3 Rab3 subfamily. 99.9 1.4E-20 3.1E-25 179.8 16.8 153 492-655 2-161 (165)
70 KOG0461 Selenocysteine-specifi 99.9 9.5E-21 2.1E-25 201.0 16.9 236 492-731 8-266 (522)
71 cd04120 Rab12 Rab12 subfamily. 99.9 1.2E-20 2.7E-25 190.0 16.8 155 493-656 2-162 (202)
72 cd04122 Rab14 Rab14 subfamily. 99.9 1.3E-20 2.9E-25 179.8 16.2 153 492-655 3-162 (166)
73 cd04175 Rap1 Rap1 subgroup. T 99.9 1.3E-20 2.8E-25 179.0 15.6 153 492-655 2-161 (164)
74 cd04106 Rab23_lke Rab23-like s 99.9 2.1E-20 4.6E-25 176.2 17.0 152 492-654 1-160 (162)
75 cd01867 Rab8_Rab10_Rab13_like 99.9 1.6E-20 3.5E-25 179.7 16.4 155 491-656 3-164 (167)
76 cd01864 Rab19 Rab19 subfamily. 99.8 1.9E-20 4.1E-25 178.3 16.3 154 491-654 3-163 (165)
77 cd04133 Rop_like Rop subfamily 99.8 2.8E-20 6.1E-25 183.2 17.4 154 492-656 2-172 (176)
78 PTZ00369 Ras-like protein; Pro 99.8 2.1E-20 4.5E-25 183.8 16.0 155 490-656 4-166 (189)
79 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 2.4E-20 5.3E-25 181.2 16.3 153 491-655 2-162 (172)
80 cd04113 Rab4 Rab4 subfamily. 99.8 2.7E-20 5.9E-25 175.9 16.1 152 492-654 1-159 (161)
81 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 3.2E-20 6.9E-25 176.6 16.3 154 492-656 3-163 (166)
82 cd04140 ARHI_like ARHI subfami 99.8 3.8E-20 8.3E-25 176.8 16.7 153 492-655 2-163 (165)
83 cd04116 Rab9 Rab9 subfamily. 99.8 3.4E-20 7.4E-25 177.1 16.4 154 491-654 5-168 (170)
84 cd01875 RhoG RhoG subfamily. 99.8 4.1E-20 9E-25 182.7 17.3 161 491-656 3-176 (191)
85 COG5258 GTPBP1 GTPase [General 99.8 1.4E-20 3E-25 202.1 14.9 241 489-732 115-417 (527)
86 cd01874 Cdc42 Cdc42 subfamily. 99.8 4.3E-20 9.4E-25 180.2 17.0 159 492-655 2-173 (175)
87 cd04154 Arl2 Arl2 subfamily. 99.8 2.4E-20 5.1E-25 179.9 14.9 155 488-653 11-171 (173)
88 cd01891 TypA_BipA TypA (tyrosi 99.8 1.1E-20 2.4E-25 186.4 12.5 157 491-653 2-178 (194)
89 smart00174 RHO Rho (Ras homolo 99.8 5.1E-20 1.1E-24 176.2 16.4 152 494-656 1-171 (174)
90 cd04176 Rap2 Rap2 subgroup. T 99.8 3.1E-20 6.7E-25 175.9 14.8 152 492-654 2-160 (163)
91 KOG0092 GTPase Rab5/YPT51 and 99.8 2.6E-20 5.7E-25 185.0 14.8 159 489-658 3-168 (200)
92 cd01862 Rab7 Rab7 subfamily. 99.8 8.1E-20 1.8E-24 173.5 17.5 155 492-656 1-166 (172)
93 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 5.5E-20 1.2E-24 181.9 16.9 155 490-655 4-178 (182)
94 cd04121 Rab40 Rab40 subfamily. 99.8 6.3E-20 1.4E-24 182.8 17.3 156 490-656 5-166 (189)
95 cd04112 Rab26 Rab26 subfamily. 99.8 7.1E-20 1.5E-24 180.3 17.5 156 492-657 1-163 (191)
96 cd01861 Rab6 Rab6 subfamily. 99.8 6.4E-20 1.4E-24 172.7 16.3 153 492-654 1-159 (161)
97 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 4.9E-20 1.1E-24 180.6 16.0 161 490-656 2-169 (183)
98 cd01868 Rab11_like Rab11-like. 99.8 5.6E-20 1.2E-24 174.4 16.0 154 492-655 4-163 (165)
99 cd04134 Rho3 Rho3 subfamily. 99.8 6.6E-20 1.4E-24 180.5 17.0 162 492-656 1-173 (189)
100 TIGR03156 GTP_HflX GTP-binding 99.8 3.3E-20 7.1E-25 201.6 16.2 217 412-654 116-349 (351)
101 KOG0394 Ras-related GTPase [Ge 99.8 2E-20 4.3E-25 184.8 13.0 159 489-657 7-178 (210)
102 cd04132 Rho4_like Rho4-like su 99.8 1.1E-19 2.3E-24 176.9 18.1 156 492-658 1-168 (187)
103 cd04127 Rab27A Rab27a subfamil 99.8 6.8E-20 1.5E-24 176.6 16.4 154 491-655 4-175 (180)
104 cd01866 Rab2 Rab2 subfamily. 99.8 8.8E-20 1.9E-24 175.1 17.1 154 492-656 5-165 (168)
105 cd04131 Rnd Rnd subfamily. Th 99.8 8.7E-20 1.9E-24 179.3 17.2 153 492-655 2-174 (178)
106 cd01871 Rac1_like Rac1-like su 99.8 9E-20 2E-24 177.8 17.2 153 492-654 2-172 (174)
107 KOG0078 GTP-binding protein SE 99.8 3.4E-20 7.5E-25 186.5 14.6 158 488-656 9-173 (207)
108 PLN03071 GTP-binding nuclear p 99.8 6.3E-20 1.4E-24 186.1 16.4 157 489-656 11-171 (219)
109 cd01897 NOG NOG1 is a nucleola 99.8 9.7E-20 2.1E-24 173.0 16.7 152 492-655 1-166 (168)
110 smart00175 RAB Rab subfamily o 99.8 1.2E-19 2.6E-24 170.7 17.1 153 492-655 1-160 (164)
111 cd04144 Ras2 Ras2 subfamily. 99.8 8.9E-20 1.9E-24 179.5 16.8 152 493-656 1-162 (190)
112 cd04149 Arf6 Arf6 subfamily. 99.8 4.5E-20 9.8E-25 178.7 14.3 155 489-654 7-167 (168)
113 cd04160 Arfrp1 Arfrp1 subfamil 99.8 4.1E-20 9E-25 175.4 13.8 156 493-654 1-166 (167)
114 cd04135 Tc10 TC10 subfamily. 99.8 1.3E-19 2.8E-24 173.4 17.1 153 492-655 1-172 (174)
115 cd04150 Arf1_5_like Arf1-Arf5- 99.8 6.5E-20 1.4E-24 175.6 15.0 151 492-653 1-157 (159)
116 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 1.1E-19 2.4E-24 176.3 16.8 153 493-656 2-164 (170)
117 cd01860 Rab5_related Rab5-rela 99.8 1.1E-19 2.4E-24 171.4 16.1 153 492-655 2-161 (163)
118 cd01884 EF_Tu EF-Tu subfamily. 99.8 7.6E-20 1.6E-24 183.5 15.8 147 492-646 3-172 (195)
119 cd04157 Arl6 Arl6 subfamily. 99.8 4.3E-20 9.3E-25 173.7 13.1 152 493-654 1-161 (162)
120 COG1160 Predicted GTPases [Gen 99.8 5.4E-20 1.2E-24 202.5 15.6 151 492-656 4-164 (444)
121 cd04117 Rab15 Rab15 subfamily. 99.8 1.3E-19 2.9E-24 173.3 16.3 153 492-654 1-159 (161)
122 cd04110 Rab35 Rab35 subfamily. 99.8 1.5E-19 3.2E-24 179.7 17.2 155 491-656 6-166 (199)
123 cd00881 GTP_translation_factor 99.8 1.5E-19 3.3E-24 173.4 16.8 159 493-655 1-185 (189)
124 cd04128 Spg1 Spg1p. Spg1p (se 99.8 4E-20 8.6E-25 182.2 12.8 157 492-656 1-165 (182)
125 cd01894 EngA1 EngA1 subfamily. 99.8 1.4E-19 3.1E-24 168.3 15.6 146 495-654 1-155 (157)
126 cd04109 Rab28 Rab28 subfamily. 99.8 3.1E-19 6.8E-24 179.6 19.3 155 492-656 1-165 (215)
127 COG0480 FusA Translation elong 99.8 2.2E-19 4.7E-24 209.1 20.7 242 488-732 7-376 (697)
128 cd04101 RabL4 RabL4 (Rab-like4 99.8 2.2E-19 4.9E-24 169.8 17.1 155 492-656 1-163 (164)
129 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 1.6E-19 3.4E-24 179.9 16.6 157 489-656 20-184 (221)
130 cd04118 Rab24 Rab24 subfamily. 99.8 2.7E-19 5.8E-24 175.2 18.2 155 492-656 1-165 (193)
131 cd01863 Rab18 Rab18 subfamily. 99.8 1.7E-19 3.6E-24 170.2 16.0 152 492-654 1-159 (161)
132 COG1160 Predicted GTPases [Gen 99.8 7.6E-20 1.6E-24 201.3 15.4 161 489-657 176-351 (444)
133 cd04130 Wrch_1 Wrch-1 subfamil 99.8 2.6E-19 5.6E-24 172.7 17.3 153 492-655 1-172 (173)
134 cd04151 Arl1 Arl1 subfamily. 99.8 9.4E-20 2E-24 172.7 14.0 151 493-654 1-157 (158)
135 cd04139 RalA_RalB RalA/RalB su 99.8 1.8E-19 3.9E-24 169.1 15.8 153 492-656 1-161 (164)
136 cd04156 ARLTS1 ARLTS1 subfamil 99.8 7.8E-20 1.7E-24 172.3 13.3 153 493-654 1-159 (160)
137 cd04125 RabA_like RabA-like su 99.8 2.4E-19 5.3E-24 175.3 17.2 155 492-656 1-161 (188)
138 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 2.1E-19 4.6E-24 185.1 17.2 154 491-656 13-187 (232)
139 smart00177 ARF ARF-like small 99.8 2.1E-19 4.6E-24 174.9 15.8 156 489-655 11-172 (175)
140 cd04115 Rab33B_Rab33A Rab33B/R 99.8 2.3E-19 5.1E-24 172.5 15.9 155 491-655 2-167 (170)
141 cd04114 Rab30 Rab30 subfamily. 99.8 2.9E-19 6.2E-24 169.9 16.3 156 490-655 6-167 (169)
142 cd01870 RhoA_like RhoA-like su 99.8 3.9E-19 8.5E-24 170.2 16.9 160 492-656 2-174 (175)
143 cd04123 Rab21 Rab21 subfamily. 99.8 3.9E-19 8.4E-24 166.2 16.2 153 492-655 1-160 (162)
144 smart00176 RAN Ran (Ras-relate 99.8 2.2E-19 4.7E-24 180.7 15.5 149 497-656 1-153 (200)
145 cd00154 Rab Rab family. Rab G 99.8 4.4E-19 9.5E-24 163.5 16.1 151 492-653 1-158 (159)
146 cd00157 Rho Rho (Ras homology) 99.8 3.5E-19 7.6E-24 169.0 15.7 152 492-654 1-170 (171)
147 cd04158 ARD1 ARD1 subfamily. 99.8 2.7E-19 5.8E-24 172.5 14.9 153 493-655 1-159 (169)
148 PLN03110 Rab GTPase; Provision 99.8 3.6E-19 7.7E-24 179.9 16.4 157 490-656 11-173 (216)
149 cd00879 Sar1 Sar1 subfamily. 99.8 2.6E-19 5.6E-24 174.6 14.7 160 488-654 16-188 (190)
150 cd04142 RRP22 RRP22 subfamily. 99.8 4.5E-19 9.8E-24 177.4 16.7 156 492-656 1-173 (198)
151 cd04143 Rhes_like Rhes_like su 99.8 3.8E-19 8.2E-24 184.4 16.7 156 492-658 1-172 (247)
152 PLN00223 ADP-ribosylation fact 99.8 3.2E-19 6.8E-24 175.4 15.2 156 489-655 15-176 (181)
153 cd04111 Rab39 Rab39 subfamily. 99.8 4.3E-19 9.3E-24 178.9 16.0 155 492-656 3-165 (211)
154 TIGR00436 era GTP-binding prot 99.8 4.1E-19 8.8E-24 185.5 16.4 155 493-658 2-165 (270)
155 PRK15494 era GTPase Era; Provi 99.8 3.5E-19 7.5E-24 192.6 16.3 159 489-658 50-217 (339)
156 cd01888 eIF2_gamma eIF2-gamma 99.8 3.2E-19 6.9E-24 178.6 14.9 161 492-654 1-196 (203)
157 cd04166 CysN_ATPS CysN_ATPS su 99.8 1E-19 2.2E-24 182.9 11.3 146 493-648 1-185 (208)
158 PRK04213 GTP-binding protein; 99.8 5.8E-19 1.3E-23 174.1 16.5 154 490-655 8-190 (201)
159 cd01892 Miro2 Miro2 subfamily. 99.8 4E-19 8.6E-24 172.0 15.0 158 489-656 2-165 (169)
160 PLN03118 Rab family protein; P 99.8 7.5E-19 1.6E-23 175.9 17.4 155 490-656 13-176 (211)
161 COG4108 PrfC Peptide chain rel 99.8 5.4E-19 1.2E-23 192.7 17.6 238 490-732 11-366 (528)
162 cd04177 RSR1 RSR1 subgroup. R 99.8 5.8E-19 1.2E-23 169.2 15.9 153 492-655 2-162 (168)
163 cd00878 Arf_Arl Arf (ADP-ribos 99.8 2.8E-19 6E-24 168.5 13.3 151 493-654 1-157 (158)
164 PF02421 FeoB_N: Ferrous iron 99.8 2.6E-19 5.6E-24 174.6 13.4 143 492-652 1-156 (156)
165 PRK03003 GTP-binding protein D 99.8 4E-19 8.6E-24 199.6 16.7 161 489-657 209-382 (472)
166 TIGR03594 GTPase_EngA ribosome 99.8 4E-19 8.6E-24 195.6 16.4 161 489-657 170-344 (429)
167 cd01893 Miro1 Miro1 subfamily. 99.8 8.1E-19 1.8E-23 168.1 16.3 154 492-656 1-163 (166)
168 cd01879 FeoB Ferrous iron tran 99.8 5E-19 1.1E-23 165.5 14.5 147 496-656 1-156 (158)
169 KOG0098 GTPase Rab2, small G p 99.8 2.6E-19 5.6E-24 177.2 12.5 154 491-655 6-166 (216)
170 cd04147 Ras_dva Ras-dva subfam 99.8 5.8E-19 1.3E-23 175.0 15.1 158 493-658 1-164 (198)
171 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 5.9E-19 1.3E-23 171.1 14.5 153 490-653 14-172 (174)
172 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 9.5E-19 2.1E-23 179.1 16.7 160 492-656 2-175 (222)
173 cd04146 RERG_RasL11_like RERG/ 99.8 6.2E-19 1.3E-23 167.9 14.3 151 493-655 1-162 (165)
174 cd01895 EngA2 EngA2 subfamily. 99.8 1.5E-18 3.2E-23 163.0 16.6 157 490-654 1-172 (174)
175 PTZ00133 ADP-ribosylation fact 99.8 9.8E-19 2.1E-23 171.9 15.8 156 489-655 15-176 (182)
176 cd04159 Arl10_like Arl10-like 99.8 6.8E-19 1.5E-23 162.6 13.7 151 494-654 2-158 (159)
177 cd01898 Obg Obg subfamily. Th 99.8 1.1E-18 2.4E-23 165.8 15.4 153 493-655 2-169 (170)
178 cd04137 RheB Rheb (Ras Homolog 99.8 1.2E-18 2.6E-23 168.2 16.0 158 492-660 2-166 (180)
179 PF00071 Ras: Ras family; Int 99.8 1.7E-18 3.6E-23 163.6 15.9 153 493-656 1-160 (162)
180 PLN03108 Rab family protein; P 99.8 1.8E-18 3.9E-23 173.8 17.1 155 491-656 6-167 (210)
181 cd04126 Rab20 Rab20 subfamily. 99.8 1.3E-18 2.9E-23 177.7 15.8 158 492-656 1-189 (220)
182 smart00178 SAR Sar1p-like memb 99.8 1.3E-18 2.8E-23 170.9 15.0 159 489-654 15-182 (184)
183 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.4E-18 3.1E-23 167.6 14.8 153 493-653 1-165 (167)
184 cd04165 GTPBP1_like GTPBP1-lik 99.8 9E-19 2E-23 179.3 14.1 162 493-654 1-220 (224)
185 cd00876 Ras Ras family. The R 99.8 1.4E-18 3.1E-23 162.0 14.2 150 493-654 1-158 (160)
186 PRK03003 GTP-binding protein D 99.8 1.5E-18 3.3E-23 194.9 17.2 153 490-656 37-198 (472)
187 cd01883 EF1_alpha Eukaryotic e 99.8 4.3E-19 9.2E-24 179.9 11.3 147 493-647 1-195 (219)
188 cd01873 RhoBTB RhoBTB subfamil 99.8 3E-18 6.6E-23 171.4 17.2 152 492-655 3-194 (195)
189 COG1159 Era GTPase [General fu 99.8 1.1E-18 2.3E-23 183.9 14.5 156 490-656 5-171 (298)
190 cd04164 trmE TrmE (MnmE, ThdF, 99.8 2.7E-18 5.9E-23 159.3 15.6 146 491-655 1-155 (157)
191 PRK00093 GTP-binding protein D 99.8 2.2E-18 4.7E-23 190.5 16.9 161 489-657 171-344 (435)
192 PLN00116 translation elongatio 99.8 8.8E-18 1.9E-22 200.6 23.3 120 488-607 16-163 (843)
193 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 1.4E-18 3.1E-23 167.4 12.9 152 494-654 2-163 (164)
194 TIGR00231 small_GTP small GTP- 99.8 3.9E-18 8.5E-23 155.4 15.0 151 492-653 2-160 (161)
195 cd04155 Arl3 Arl3 subfamily. 99.8 2.6E-18 5.7E-23 164.2 14.1 154 490-654 13-172 (173)
196 PRK00093 GTP-binding protein D 99.8 5.4E-18 1.2E-22 187.4 17.7 150 492-655 2-160 (435)
197 cd04148 RGK RGK subfamily. Th 99.8 8.9E-18 1.9E-22 170.6 16.9 155 492-658 1-164 (221)
198 TIGR03594 GTPase_EngA ribosome 99.8 5.6E-18 1.2E-22 186.6 16.6 150 493-656 1-159 (429)
199 cd01878 HflX HflX subfamily. 99.8 5.2E-18 1.1E-22 168.0 14.6 151 489-654 39-202 (204)
200 PTZ00416 elongation factor 2; 99.8 2.4E-17 5.2E-22 196.7 23.0 119 489-607 17-157 (836)
201 KOG0080 GTPase Rab18, small G 99.8 2.1E-18 4.5E-23 167.3 11.0 153 491-654 11-171 (209)
202 TIGR03598 GTPase_YsxC ribosome 99.8 4.1E-18 8.9E-23 166.2 13.2 148 489-646 16-179 (179)
203 TIGR02528 EutP ethanolamine ut 99.8 4.2E-18 9.1E-23 158.4 12.6 133 493-653 2-141 (142)
204 cd04103 Centaurin_gamma Centau 99.8 1.6E-17 3.5E-22 160.0 16.0 147 492-654 1-156 (158)
205 PRK00089 era GTPase Era; Revie 99.8 1E-17 2.2E-22 176.0 15.8 157 490-657 4-171 (292)
206 cd01885 EF2 EF2 (for archaea a 99.8 4.7E-18 1E-22 174.1 12.8 116 492-607 1-138 (222)
207 cd04168 TetM_like Tet(M)-like 99.8 7.7E-18 1.7E-22 173.7 14.3 160 493-656 1-234 (237)
208 cd04163 Era Era subfamily. Er 99.8 2.7E-17 5.8E-22 152.5 16.3 153 491-654 3-166 (168)
209 PRK09518 bifunctional cytidyla 99.8 1.7E-17 3.7E-22 195.0 18.4 155 488-656 272-435 (712)
210 cd04129 Rho2 Rho2 subfamily. 99.8 2.5E-17 5.5E-22 161.7 16.7 154 492-656 2-172 (187)
211 PRK09518 bifunctional cytidyla 99.7 1.1E-17 2.4E-22 196.6 16.6 160 490-657 449-621 (712)
212 KOG0093 GTPase Rab3, small G p 99.7 6E-18 1.3E-22 162.2 11.1 156 491-657 21-183 (193)
213 KOG0087 GTPase Rab11/YPT3, sma 99.7 7.8E-18 1.7E-22 169.5 12.2 157 489-655 12-174 (222)
214 PF00025 Arf: ADP-ribosylation 99.7 1.4E-17 3.1E-22 163.1 13.5 157 489-655 12-174 (175)
215 PRK00454 engB GTP-binding prot 99.7 2.8E-17 6.2E-22 160.4 15.4 156 488-655 21-192 (196)
216 KOG0095 GTPase Rab30, small G 99.7 8.8E-18 1.9E-22 161.3 11.2 153 491-653 7-165 (213)
217 PRK15467 ethanolamine utilizat 99.7 1.8E-17 3.9E-22 160.1 13.3 140 493-656 3-146 (158)
218 PTZ00132 GTP-binding nuclear p 99.7 5.4E-17 1.2E-21 162.7 17.1 155 491-656 9-167 (215)
219 cd04167 Snu114p Snu114p subfam 99.7 1.1E-17 2.3E-22 168.4 11.8 116 492-607 1-136 (213)
220 cd00880 Era_like Era (E. coli 99.7 4.3E-17 9.4E-22 148.5 14.3 153 496-655 1-162 (163)
221 PRK12299 obgE GTPase CgtA; Rev 99.7 5.8E-17 1.3E-21 175.4 17.6 155 491-656 158-327 (335)
222 cd01881 Obg_like The Obg-like 99.7 2.7E-17 5.8E-22 156.5 12.1 150 496-654 1-174 (176)
223 KOG0079 GTP-binding protein H- 99.7 2.4E-17 5.2E-22 158.2 11.7 158 492-660 9-172 (198)
224 KOG0463 GTP-binding protein GP 99.7 4.3E-17 9.4E-22 174.7 13.8 237 491-730 133-434 (641)
225 cd01886 EF-G Elongation factor 99.7 5.5E-17 1.2E-21 170.7 14.1 124 493-620 1-142 (270)
226 COG0218 Predicted GTPase [Gene 99.7 1.6E-16 3.5E-21 159.8 16.5 157 490-656 23-196 (200)
227 PRK11058 GTPase HflX; Provisio 99.7 8.5E-17 1.8E-21 179.1 16.0 151 491-656 197-361 (426)
228 cd00882 Ras_like_GTPase Ras-li 99.7 8.5E-17 1.9E-21 144.0 13.0 148 496-653 1-156 (157)
229 KOG1143 Predicted translation 99.7 6.7E-17 1.5E-21 173.3 14.2 310 413-732 80-471 (591)
230 TIGR02729 Obg_CgtA Obg family 99.7 1.6E-16 3.4E-21 171.6 15.8 154 491-655 157-327 (329)
231 KOG1191 Mitochondrial GTPase [ 99.7 5.7E-17 1.2E-21 179.2 12.2 172 480-658 257-451 (531)
232 KOG0086 GTPase Rab4, small G p 99.7 5.3E-17 1.2E-21 156.5 10.4 156 491-654 9-168 (214)
233 PRK12298 obgE GTPase CgtA; Rev 99.7 3.8E-16 8.2E-21 172.2 17.1 158 492-658 160-334 (390)
234 PRK12297 obgE GTPase CgtA; Rev 99.7 5.1E-16 1.1E-20 172.7 17.8 151 492-656 159-326 (424)
235 cd04169 RF3 RF3 subfamily. Pe 99.7 2.2E-16 4.7E-21 165.9 13.8 129 492-620 3-149 (267)
236 PRK12296 obgE GTPase CgtA; Rev 99.7 4.2E-16 9.1E-21 176.0 16.3 155 491-658 159-341 (500)
237 cd01876 YihA_EngB The YihA (En 99.7 7E-16 1.5E-20 143.6 14.1 152 494-655 2-169 (170)
238 KOG0395 Ras-related GTPase [Ge 99.7 5.5E-16 1.2E-20 156.2 13.1 158 490-658 2-166 (196)
239 PRK09554 feoB ferrous iron tra 99.7 1.1E-15 2.3E-20 181.0 17.5 152 491-656 3-167 (772)
240 cd04102 RabL3 RabL3 (Rab-like3 99.6 1.4E-15 2.9E-20 153.8 13.6 148 492-643 1-176 (202)
241 cd04105 SR_beta Signal recogni 99.6 2E-15 4.4E-20 151.7 14.5 160 492-654 1-202 (203)
242 TIGR00437 feoB ferrous iron tr 99.6 1.2E-15 2.6E-20 176.1 14.7 145 498-656 1-154 (591)
243 KOG0459 Polypeptide release fa 99.6 1.4E-15 3E-20 164.8 12.5 238 485-732 73-370 (501)
244 KOG0088 GTPase Rab21, small G 99.6 5.3E-16 1.1E-20 150.4 8.2 154 490-654 12-172 (218)
245 PF10662 PduV-EutP: Ethanolami 99.6 1.6E-15 3.5E-20 146.0 10.9 135 492-653 2-142 (143)
246 cd04170 EF-G_bact Elongation f 99.6 8.5E-16 1.8E-20 160.1 9.6 124 493-620 1-142 (268)
247 COG2229 Predicted GTPase [Gene 99.6 8.6E-15 1.9E-19 145.2 16.0 160 487-655 6-176 (187)
248 KOG0091 GTPase Rab39, small G 99.6 1.2E-15 2.6E-20 148.6 9.1 155 489-655 6-171 (213)
249 COG1100 GTPase SAR1 and relate 99.6 7.7E-15 1.7E-19 146.0 14.3 163 492-656 6-184 (219)
250 KOG0465 Mitochondrial elongati 99.6 7.2E-15 1.6E-19 165.4 15.4 237 490-731 38-405 (721)
251 cd01896 DRG The developmentall 99.6 1.9E-14 4.1E-19 148.1 15.2 148 493-657 2-226 (233)
252 KOG0097 GTPase Rab14, small G 99.6 1.3E-14 2.9E-19 138.5 12.8 153 490-653 10-169 (215)
253 KOG0073 GTP-binding ADP-ribosy 99.6 2.5E-14 5.3E-19 139.6 13.3 158 488-655 13-176 (185)
254 KOG0070 GTP-binding ADP-ribosy 99.6 8E-15 1.7E-19 145.3 9.7 158 488-656 14-177 (181)
255 KOG0393 Ras-related small GTPa 99.6 6.4E-15 1.4E-19 148.5 9.1 161 490-656 3-178 (198)
256 PLN00023 GTP-binding protein; 99.6 2.6E-14 5.6E-19 154.0 14.3 119 488-608 18-165 (334)
257 KOG0081 GTPase Rab27, small G 99.6 1.8E-15 3.9E-20 146.9 4.2 153 492-655 10-179 (219)
258 KOG1423 Ras-like GTPase ERA [C 99.6 2.8E-14 6E-19 150.8 12.7 172 488-663 69-277 (379)
259 PTZ00099 rab6; Provisional 99.5 5.3E-14 1.1E-18 138.8 13.1 124 524-656 11-141 (176)
260 KOG0075 GTP-binding ADP-ribosy 99.5 1.6E-14 3.4E-19 138.8 8.7 159 491-658 20-183 (186)
261 KOG0083 GTPase Rab26/Rab37, sm 99.5 4.9E-15 1.1E-19 140.4 5.2 181 496-687 2-188 (192)
262 KOG0466 Translation initiation 99.5 4.7E-15 1E-19 156.1 4.9 235 491-730 38-334 (466)
263 cd04104 p47_IIGP_like p47 (47- 99.5 1.6E-13 3.5E-18 136.9 14.0 158 491-655 1-182 (197)
264 COG0370 FeoB Fe2+ transport sy 99.5 1.5E-13 3.3E-18 157.7 15.3 149 491-657 3-164 (653)
265 COG1084 Predicted GTPase [Gene 99.5 1.6E-13 3.4E-18 146.6 14.2 162 483-656 160-335 (346)
266 PF08477 Miro: Miro-like prote 99.5 5.2E-14 1.1E-18 127.1 8.3 109 493-605 1-119 (119)
267 PF01926 MMR_HSR1: 50S ribosom 99.5 1.7E-13 3.7E-18 124.5 11.0 106 493-603 1-116 (116)
268 KOG1489 Predicted GTP-binding 99.4 1.7E-12 3.8E-17 137.9 13.4 153 491-654 196-364 (366)
269 COG2262 HflX GTPases [General 99.4 1.7E-12 3.8E-17 142.0 13.7 155 488-657 189-356 (411)
270 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 3.5E-12 7.5E-17 126.9 13.8 152 492-657 1-184 (196)
271 KOG0071 GTP-binding ADP-ribosy 99.4 2E-12 4.4E-17 123.7 10.9 157 489-656 15-177 (180)
272 KOG0076 GTP-binding ADP-ribosy 99.4 6.3E-13 1.4E-17 131.0 7.5 162 489-657 15-187 (197)
273 PRK09866 hypothetical protein; 99.4 3.4E-12 7.4E-17 146.5 14.0 112 542-655 230-351 (741)
274 COG1163 DRG Predicted GTPase [ 99.4 9.1E-12 2E-16 133.0 14.3 152 492-660 64-292 (365)
275 cd01899 Ygr210 Ygr210 subfamil 99.3 8.1E-12 1.8E-16 134.8 13.9 84 494-577 1-111 (318)
276 cd01850 CDC_Septin CDC/Septin. 99.3 1.8E-11 3.9E-16 129.4 15.8 116 492-608 5-157 (276)
277 cd01882 BMS1 Bms1. Bms1 is an 99.3 2.2E-11 4.7E-16 124.8 14.9 143 488-645 36-184 (225)
278 KOG4252 GTP-binding protein [S 99.3 7.4E-13 1.6E-17 131.0 3.0 156 489-655 18-179 (246)
279 KOG0464 Elongation factor G [T 99.3 1.8E-12 3.8E-17 140.9 4.9 120 490-613 36-173 (753)
280 cd03702 IF2_mtIF2_II This fami 99.3 8.2E-12 1.8E-16 112.9 8.2 64 669-732 1-64 (95)
281 KOG0074 GTP-binding ADP-ribosy 99.3 7E-12 1.5E-16 120.2 7.3 156 488-653 14-175 (185)
282 COG0536 Obg Predicted GTPase [ 99.3 4.2E-11 9E-16 128.8 13.7 157 493-659 161-335 (369)
283 cd03701 IF2_IF5B_II IF2_IF5B_I 99.3 1.3E-11 2.7E-16 111.5 8.3 64 669-732 1-64 (95)
284 KOG0468 U5 snRNP-specific prot 99.3 1.3E-11 2.9E-16 140.0 10.3 122 485-606 122-261 (971)
285 COG3596 Predicted GTPase [Gene 99.3 1.6E-11 3.4E-16 129.0 9.7 166 488-656 36-221 (296)
286 PRK09602 translation-associate 99.2 1.3E-10 2.7E-15 129.0 14.5 85 492-576 2-113 (396)
287 KOG0096 GTPase Ran/TC4/GSP1 (n 99.2 4.2E-11 9E-16 119.7 9.2 152 491-654 10-166 (216)
288 KOG0467 Translation elongation 99.2 8.5E-11 1.8E-15 135.5 13.0 118 489-606 7-136 (887)
289 PF09439 SRPRB: Signal recogni 99.2 5.1E-11 1.1E-15 119.2 9.5 115 490-611 2-129 (181)
290 KOG1532 GTPase XAB1, interacts 99.2 4.3E-11 9.3E-16 125.4 7.1 172 485-656 13-263 (366)
291 KOG0072 GTP-binding ADP-ribosy 99.1 7.7E-11 1.7E-15 113.4 5.6 156 490-656 17-178 (182)
292 KOG0090 Signal recognition par 99.1 3.3E-10 7.1E-15 115.3 10.2 157 490-654 37-236 (238)
293 COG4917 EutP Ethanolamine util 99.1 1.9E-10 4.2E-15 108.5 7.8 138 492-655 2-144 (148)
294 PRK13768 GTPase; Provisional 99.1 1E-09 2.3E-14 114.6 11.8 113 543-655 98-245 (253)
295 KOG2486 Predicted GTPase [Gene 99.0 4.1E-10 8.9E-15 118.4 8.6 159 488-655 133-314 (320)
296 PTZ00258 GTP-binding protein; 99.0 1.2E-09 2.5E-14 121.0 12.6 87 489-576 19-126 (390)
297 KOG1707 Predicted Ras related/ 99.0 3.8E-10 8.3E-15 127.7 7.3 151 488-652 6-170 (625)
298 KOG0469 Elongation factor 2 [T 99.0 1.8E-09 3.8E-14 120.1 11.3 119 488-606 16-162 (842)
299 KOG1490 GTP-binding protein CR 99.0 1E-09 2.2E-14 122.5 8.9 156 484-651 161-335 (620)
300 KOG3883 Ras family small GTPas 99.0 7.4E-09 1.6E-13 100.8 13.7 156 489-654 7-172 (198)
301 PF00350 Dynamin_N: Dynamin fa 99.0 2.1E-09 4.5E-14 103.0 9.9 111 494-604 1-168 (168)
302 TIGR00073 hypB hydrogenase acc 99.0 5E-09 1.1E-13 105.6 13.0 151 490-655 21-205 (207)
303 PRK09435 membrane ATPase/prote 99.0 5.4E-09 1.2E-13 113.6 13.8 111 540-657 147-260 (332)
304 PF05049 IIGP: Interferon-indu 99.0 8.5E-10 1.8E-14 121.3 7.6 157 485-654 29-215 (376)
305 cd01853 Toc34_like Toc34-like 99.0 5.7E-09 1.2E-13 109.2 13.4 118 486-607 26-162 (249)
306 KOG0077 Vesicle coat complex C 99.0 1.3E-09 2.8E-14 107.2 7.9 160 487-653 16-189 (193)
307 KOG4423 GTP-binding protein-li 99.0 2.1E-10 4.6E-15 114.4 2.4 156 492-657 26-194 (229)
308 TIGR02836 spore_IV_A stage IV 99.0 6.1E-09 1.3E-13 115.3 13.6 156 491-654 17-234 (492)
309 KOG1673 Ras GTPases [General f 98.9 2E-09 4.3E-14 104.9 8.0 156 491-653 20-182 (205)
310 TIGR00750 lao LAO/AO transport 98.9 1.1E-08 2.4E-13 109.3 13.9 109 540-657 125-238 (300)
311 TIGR00101 ureG urease accessor 98.9 9.9E-09 2.1E-13 103.8 12.5 99 541-655 91-194 (199)
312 PF03029 ATP_bind_1: Conserved 98.9 3.2E-10 6.9E-15 117.8 1.5 114 543-656 92-236 (238)
313 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 1.8E-08 4E-13 104.6 14.2 152 493-654 1-173 (232)
314 smart00053 DYNc Dynamin, GTPas 98.9 1.9E-08 4.1E-13 104.9 14.2 130 490-620 25-217 (240)
315 KOG0410 Predicted GTP binding 98.8 4.3E-09 9.4E-14 112.7 7.1 147 488-654 175-338 (410)
316 TIGR00991 3a0901s02IAP34 GTP-b 98.8 5.6E-08 1.2E-12 104.8 14.6 115 489-607 36-166 (313)
317 PF03308 ArgK: ArgK protein; 98.7 3.2E-08 7E-13 104.0 9.8 159 489-658 27-231 (266)
318 COG1703 ArgK Putative periplas 98.7 1.1E-07 2.4E-12 101.5 12.7 164 487-659 47-256 (323)
319 cd03703 aeIF5B_II aeIF5B_II: T 98.7 3.4E-08 7.3E-13 91.7 7.4 63 670-732 2-78 (110)
320 COG0378 HypB Ni2+-binding GTPa 98.7 7.7E-08 1.7E-12 97.3 10.5 97 542-655 97-199 (202)
321 PF04548 AIG1: AIG1 family; I 98.7 1.9E-07 4E-12 95.0 12.5 155 493-657 2-186 (212)
322 PF00735 Septin: Septin; Inte 98.6 1.1E-07 2.3E-12 101.4 10.2 116 492-608 5-156 (281)
323 COG0012 Predicted GTPase, prob 98.6 3E-07 6.4E-12 100.7 13.6 87 491-577 2-109 (372)
324 PRK10463 hydrogenase nickel in 98.6 6.5E-08 1.4E-12 103.5 8.4 152 489-655 102-287 (290)
325 cd01859 MJ1464 MJ1464. This f 98.6 1.2E-07 2.7E-12 90.6 9.2 92 557-656 4-95 (156)
326 cd01900 YchF YchF subfamily. 98.5 1.2E-07 2.6E-12 100.8 6.6 83 494-576 1-103 (274)
327 PRK09601 GTP-binding protein Y 98.5 1.8E-07 3.9E-12 102.9 8.0 85 492-576 3-107 (364)
328 COG5192 BMS1 GTP-binding prote 98.5 7.3E-07 1.6E-11 100.7 12.5 139 488-641 66-210 (1077)
329 TIGR00157 ribosome small subun 98.5 4.8E-07 1E-11 94.4 10.0 92 553-653 24-119 (245)
330 cd01855 YqeH YqeH. YqeH is an 98.5 7.7E-07 1.7E-11 88.1 10.1 97 552-656 21-124 (190)
331 cd01858 NGP_1 NGP-1. Autoanti 98.4 4.8E-07 1E-11 87.1 6.4 55 490-551 101-156 (157)
332 KOG3886 GTP-binding protein [S 98.4 3.8E-07 8.3E-12 94.3 4.9 118 491-611 4-133 (295)
333 cd04178 Nucleostemin_like Nucl 98.3 8.2E-07 1.8E-11 88.1 6.5 57 488-551 114-171 (172)
334 TIGR00993 3a0901s04IAP86 chlor 98.3 2.3E-06 5E-11 99.7 10.9 113 490-607 117-249 (763)
335 smart00010 small_GTPase Small 98.3 6.7E-07 1.4E-11 80.5 4.7 112 492-646 1-115 (124)
336 KOG1954 Endocytosis/signaling 98.3 4.1E-06 8.9E-11 91.5 11.3 117 490-608 57-225 (532)
337 cd01856 YlqF YlqF. Proteins o 98.3 4.3E-06 9.4E-11 81.8 10.6 97 549-655 2-99 (171)
338 cd01855 YqeH YqeH. YqeH is an 98.3 1.8E-06 3.9E-11 85.5 7.1 56 490-552 126-190 (190)
339 cd01858 NGP_1 NGP-1. Autoanti 98.3 4.9E-06 1.1E-10 80.1 9.7 89 561-656 4-94 (157)
340 COG5019 CDC3 Septin family pro 98.2 9.2E-06 2E-10 88.9 12.0 118 490-608 22-176 (373)
341 cd01849 YlqF_related_GTPase Yl 98.2 4.7E-06 1E-10 80.2 8.5 82 567-655 1-83 (155)
342 KOG1486 GTP-binding protein DR 98.2 2.7E-05 5.8E-10 81.8 13.5 83 491-577 62-151 (364)
343 KOG2655 Septin family protein 98.2 1.1E-05 2.3E-10 88.8 11.2 117 491-608 21-172 (366)
344 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 4E-06 8.6E-11 79.5 6.5 53 493-552 85-138 (141)
345 PRK10416 signal recognition pa 98.1 4E-05 8.6E-10 83.3 14.6 148 489-650 112-303 (318)
346 TIGR03596 GTPase_YlqF ribosome 98.1 7.4E-06 1.6E-10 86.7 8.5 97 549-656 4-102 (276)
347 PRK09563 rbgA GTPase YlqF; Rev 98.1 4.6E-06 9.9E-11 88.8 7.0 58 488-552 118-176 (287)
348 PRK12289 GTPase RsgA; Reviewed 98.1 1E-05 2.2E-10 89.0 9.6 85 561-654 85-172 (352)
349 KOG1547 Septin CDC10 and relat 98.1 1.8E-05 3.8E-10 82.6 10.5 130 492-623 47-218 (336)
350 cd01849 YlqF_related_GTPase Yl 98.1 5.9E-06 1.3E-10 79.5 6.6 57 488-551 97-154 (155)
351 KOG0448 Mitofusin 1 GTPase, in 98.1 1.5E-05 3.3E-10 92.5 10.9 154 487-641 105-310 (749)
352 cd01856 YlqF YlqF. Proteins o 98.1 7.6E-06 1.7E-10 80.1 7.3 58 488-552 112-170 (171)
353 TIGR00064 ftsY signal recognit 98.1 5.6E-05 1.2E-09 80.4 13.9 95 540-649 153-260 (272)
354 PRK00098 GTPase RsgA; Reviewed 98.1 1.5E-05 3.3E-10 85.5 9.5 84 563-653 78-163 (298)
355 TIGR03596 GTPase_YlqF ribosome 98.0 7E-06 1.5E-10 86.9 6.6 57 489-552 116-173 (276)
356 COG1161 Predicted GTPases [Gen 98.0 5.6E-06 1.2E-10 89.9 6.0 59 487-552 128-187 (322)
357 TIGR03597 GTPase_YqeH ribosome 98.0 2E-05 4.4E-10 86.7 10.1 96 552-655 50-151 (360)
358 TIGR03597 GTPase_YqeH ribosome 98.0 3.8E-06 8.2E-11 92.4 4.3 111 491-608 154-280 (360)
359 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 1.1E-05 2.5E-10 76.5 6.9 75 561-644 7-84 (141)
360 cd01851 GBP Guanylate-binding 98.0 1.1E-05 2.3E-10 83.2 6.6 85 491-576 7-102 (224)
361 KOG1487 GTP-binding protein DR 98.0 2.2E-05 4.7E-10 82.7 8.5 81 493-577 61-148 (358)
362 PRK14974 cell division protein 98.0 9.9E-05 2.1E-09 80.9 13.8 96 541-650 222-323 (336)
363 cd01854 YjeQ_engC YjeQ/EngC. 98.0 2.7E-05 5.9E-10 83.1 9.1 83 563-653 76-160 (287)
364 PRK09563 rbgA GTPase YlqF; Rev 98.0 2.1E-05 4.4E-10 83.9 8.1 98 549-657 7-106 (287)
365 cd03694 GTPBP_II Domain II of 97.9 3.3E-05 7.2E-10 68.4 8.0 61 671-732 3-69 (87)
366 PRK01889 GTPase RsgA; Reviewed 97.9 0.00011 2.5E-09 80.8 12.0 83 563-653 110-193 (356)
367 KOG3905 Dynein light intermedi 97.8 0.00013 2.9E-09 78.9 11.9 86 488-578 49-140 (473)
368 TIGR00092 GTP-binding protein 97.8 3.5E-05 7.5E-10 85.3 7.7 85 492-576 3-108 (368)
369 cd03693 EF1_alpha_II EF1_alpha 97.8 8.4E-05 1.8E-09 66.3 8.4 65 667-732 3-69 (91)
370 TIGR01425 SRP54_euk signal rec 97.8 8.6E-05 1.9E-09 83.7 10.4 116 490-607 99-252 (429)
371 PRK13796 GTPase YqeH; Provisio 97.8 2.8E-05 6E-10 85.8 6.4 55 491-552 160-220 (365)
372 PF05783 DLIC: Dynein light in 97.8 0.00019 4.1E-09 82.0 13.2 86 490-578 24-113 (472)
373 PRK12288 GTPase RsgA; Reviewed 97.8 0.0001 2.3E-09 81.0 10.8 86 563-654 118-205 (347)
374 cd03698 eRF3_II_like eRF3_II_l 97.8 9.9E-05 2.2E-09 64.6 8.4 62 669-732 2-65 (83)
375 cd01859 MJ1464 MJ1464. This f 97.8 4.1E-05 8.9E-10 73.3 6.5 56 489-551 99-155 (156)
376 PF03193 DUF258: Protein of un 97.7 5.4E-05 1.2E-09 75.0 6.5 58 492-556 36-101 (161)
377 KOG1491 Predicted GTP-binding 97.7 6.8E-05 1.5E-09 81.6 7.5 87 491-577 20-126 (391)
378 PRK12289 GTPase RsgA; Reviewed 97.7 5.3E-05 1.1E-09 83.5 6.1 57 493-556 174-238 (352)
379 PRK12288 GTPase RsgA; Reviewed 97.7 5.1E-05 1.1E-09 83.4 5.6 57 493-556 207-271 (347)
380 PRK14722 flhF flagellar biosyn 97.7 0.0003 6.5E-09 78.2 11.5 149 486-647 132-322 (374)
381 cd03696 selB_II selB_II: this 97.6 0.00021 4.6E-09 62.4 8.1 61 671-732 3-65 (83)
382 PRK12727 flagellar biosynthesi 97.6 0.001 2.2E-08 76.9 15.5 145 487-645 346-523 (559)
383 cd03112 CobW_like The function 97.6 0.00023 5E-09 69.4 8.9 112 492-606 1-158 (158)
384 KOG0447 Dynamin-like GTP bindi 97.6 0.00046 9.9E-09 78.7 11.7 135 486-622 303-510 (980)
385 KOG1707 Predicted Ras related/ 97.6 0.0011 2.4E-08 76.4 14.7 161 487-660 421-586 (625)
386 cd00066 G-alpha G protein alph 97.6 0.00039 8.4E-09 75.4 10.5 79 524-606 147-240 (317)
387 cd03697 EFTU_II EFTU_II: Elong 97.5 0.0002 4.2E-09 63.4 6.4 61 671-732 3-67 (87)
388 TIGR00157 ribosome small subun 97.5 0.00012 2.6E-09 76.6 5.7 56 492-555 121-184 (245)
389 cd03695 CysN_NodQ_II CysN_NodQ 97.5 0.00041 9E-09 60.8 8.2 60 672-732 4-65 (81)
390 PRK00771 signal recognition pa 97.5 0.00082 1.8E-08 76.2 12.5 116 489-607 93-245 (437)
391 smart00275 G_alpha G protein a 97.5 0.00068 1.5E-08 74.4 11.2 79 524-606 170-263 (342)
392 cd04089 eRF3_II eRF3_II: domai 97.5 0.0005 1.1E-08 60.1 8.0 60 670-732 3-64 (82)
393 COG1162 Predicted GTPases [Gen 97.4 0.00024 5.3E-09 76.6 6.0 59 492-557 165-231 (301)
394 KOG1424 Predicted GTP-binding 97.3 0.00016 3.6E-09 82.0 4.4 55 491-552 314-369 (562)
395 PRK13796 GTPase YqeH; Provisio 97.3 0.00095 2.1E-08 73.8 10.1 93 554-655 58-157 (365)
396 cd03114 ArgK-like The function 97.3 0.00059 1.3E-08 66.2 7.5 58 541-605 91-148 (148)
397 PRK06995 flhF flagellar biosyn 97.2 0.0032 6.9E-08 72.3 13.2 148 488-649 253-435 (484)
398 KOG0082 G-protein alpha subuni 97.2 0.00097 2.1E-08 73.5 8.6 67 540-606 193-274 (354)
399 PRK00098 GTPase RsgA; Reviewed 97.2 0.00046 1E-08 74.1 5.7 58 491-555 164-229 (298)
400 KOG0052 Translation elongation 97.1 0.00039 8.5E-09 76.9 4.5 115 490-608 6-156 (391)
401 PRK13695 putative NTPase; Prov 97.1 0.0037 8.1E-08 61.3 10.9 74 563-654 94-170 (174)
402 TIGR03348 VI_IcmF type VI secr 97.1 0.0013 2.8E-08 82.7 8.9 108 491-607 111-256 (1169)
403 cd03115 SRP The signal recogni 97.1 0.0031 6.6E-08 61.5 9.7 65 541-608 82-153 (173)
404 cd01854 YjeQ_engC YjeQ/EngC. 97.1 0.001 2.2E-08 71.2 6.7 58 492-556 162-227 (287)
405 PF00448 SRP54: SRP54-type pro 97.1 0.0015 3.2E-08 66.4 7.6 93 541-647 83-181 (196)
406 TIGR00959 ffh signal recogniti 97.1 0.0037 8E-08 70.8 11.3 63 541-606 182-251 (428)
407 PRK14723 flhF flagellar biosyn 97.1 0.0048 1E-07 74.1 12.8 145 490-648 184-366 (767)
408 KOG2484 GTPase [General functi 97.0 0.00049 1.1E-08 76.3 3.5 64 482-552 243-307 (435)
409 PRK10867 signal recognition pa 97.0 0.006 1.3E-07 69.3 12.3 64 541-607 183-253 (433)
410 PRK11889 flhF flagellar biosyn 97.0 0.0036 7.7E-08 70.4 10.2 145 489-647 239-418 (436)
411 PRK14721 flhF flagellar biosyn 97.0 0.0016 3.6E-08 73.4 7.7 148 487-649 187-370 (420)
412 PRK12723 flagellar biosynthesi 97.0 0.0048 1E-07 69.1 11.2 147 489-649 172-356 (388)
413 PRK11537 putative GTP-binding 97.0 0.01 2.2E-07 64.7 13.2 129 490-622 3-177 (318)
414 KOG0705 GTPase-activating prot 96.9 0.00071 1.5E-08 77.3 4.4 147 492-655 31-187 (749)
415 PF04760 IF2_N: Translation in 96.9 0.00027 5.7E-09 57.4 0.7 51 410-460 2-54 (54)
416 PRK05703 flhF flagellar biosyn 96.9 0.0065 1.4E-07 68.8 11.6 94 541-648 299-400 (424)
417 COG1618 Predicted nucleotide k 96.9 0.016 3.5E-07 57.9 12.8 142 490-655 4-174 (179)
418 KOG2485 Conserved ATP/GTP bind 96.9 0.0014 3E-08 71.0 5.7 61 488-552 140-206 (335)
419 cd01342 Translation_Factor_II_ 96.9 0.0053 1.1E-07 50.5 7.9 62 670-732 2-67 (83)
420 COG3640 CooC CO dehydrogenase 96.8 0.0033 7.1E-08 66.0 7.7 63 542-607 134-198 (255)
421 KOG3859 Septins (P-loop GTPase 96.8 0.0012 2.7E-08 70.4 4.2 117 491-608 42-190 (406)
422 COG0523 Putative GTPases (G3E 96.8 0.01 2.2E-07 65.0 11.3 148 492-650 2-194 (323)
423 cd03688 eIF2_gamma_II eIF2_gam 96.7 0.0087 1.9E-07 56.2 8.8 66 666-732 3-90 (113)
424 cd04178 Nucleostemin_like Nucl 96.6 0.005 1.1E-07 61.3 7.0 41 567-607 1-43 (172)
425 cd04092 mtEFG2_II_like mtEFG2_ 96.6 0.0077 1.7E-07 52.5 7.4 63 670-732 2-69 (83)
426 cd03690 Tet_II Tet_II: This su 96.6 0.0082 1.8E-07 53.0 7.5 66 667-732 2-71 (85)
427 cd04088 EFG_mtEFG_II EFG_mtEFG 96.6 0.0078 1.7E-07 52.3 7.3 63 670-732 2-69 (83)
428 cd03110 Fer4_NifH_child This p 96.6 0.0078 1.7E-07 58.9 8.1 81 540-622 91-171 (179)
429 cd03692 mtIF2_IVc mtIF2_IVc: t 96.6 0.012 2.7E-07 51.9 8.6 60 672-732 4-68 (84)
430 cd03691 BipA_TypA_II BipA_TypA 96.6 0.01 2.2E-07 51.9 7.9 63 670-732 2-72 (86)
431 PF02492 cobW: CobW/HypB/UreG, 96.5 0.0041 8.8E-08 61.7 5.9 127 492-621 1-170 (178)
432 PF09547 Spore_IV_A: Stage IV 96.5 0.013 2.8E-07 66.2 9.8 156 491-654 17-234 (492)
433 PRK12724 flagellar biosynthesi 96.5 0.0068 1.5E-07 68.5 7.8 144 490-647 222-400 (432)
434 cd02036 MinD Bacterial cell di 96.5 0.023 4.9E-07 54.8 10.3 75 543-619 64-139 (179)
435 PF14578 GTP_EFTU_D4: Elongati 96.4 0.012 2.7E-07 52.3 7.6 63 667-732 3-65 (81)
436 COG0552 FtsY Signal recognitio 96.4 0.007 1.5E-07 66.3 6.8 25 488-512 136-160 (340)
437 cd03689 RF3_II RF3_II: this su 96.4 0.014 3.1E-07 51.6 7.6 62 671-732 1-70 (85)
438 KOG2423 Nucleolar GTPase [Gene 96.3 0.0018 3.9E-08 71.9 2.1 58 488-552 304-362 (572)
439 PF00503 G-alpha: G-protein al 96.3 0.022 4.7E-07 63.3 10.7 67 540-606 234-315 (389)
440 KOG3887 Predicted small GTPase 96.3 0.021 4.6E-07 60.3 9.7 149 492-653 28-198 (347)
441 cd04091 mtEFG1_II_like mtEFG1_ 96.3 0.016 3.4E-07 50.5 7.5 61 670-731 2-67 (81)
442 cd03699 lepA_II lepA_II: This 96.3 0.018 3.9E-07 50.7 7.8 63 670-732 2-68 (86)
443 COG3523 IcmF Type VI protein s 96.2 0.0072 1.6E-07 75.5 6.7 106 492-607 126-269 (1188)
444 COG1162 Predicted GTPases [Gen 96.2 0.024 5.3E-07 61.5 9.9 81 564-653 78-163 (301)
445 TIGR02475 CobW cobalamin biosy 96.1 0.046 1E-06 60.2 11.9 25 490-514 3-27 (341)
446 PRK06731 flhF flagellar biosyn 96.1 0.037 8.1E-07 59.2 10.8 145 489-647 73-252 (270)
447 COG1419 FlhF Flagellar GTP-bin 96.0 0.014 3.1E-07 65.4 7.4 128 489-621 201-364 (407)
448 PRK12726 flagellar biosynthesi 95.9 0.022 4.8E-07 63.9 8.1 144 489-647 204-383 (407)
449 PF03144 GTP_EFTU_D2: Elongati 95.7 0.0081 1.7E-07 50.8 2.9 45 683-728 1-52 (74)
450 cd04090 eEF2_II_snRNP Loc2 eEF 95.6 0.038 8.2E-07 49.6 6.9 62 671-732 3-79 (94)
451 cd02042 ParA ParA and ParB of 95.5 0.036 7.9E-07 49.4 6.4 71 494-577 2-73 (104)
452 cd02038 FleN-like FleN is a me 95.5 0.059 1.3E-06 51.3 8.1 104 495-606 4-109 (139)
453 KOG0780 Signal recognition par 95.4 0.023 4.9E-07 63.5 5.8 91 488-578 98-226 (483)
454 cd03111 CpaE_like This protein 95.3 0.07 1.5E-06 48.7 7.5 100 494-603 2-106 (106)
455 cd01983 Fer4_NifH The Fer4_Nif 95.2 0.054 1.2E-06 46.0 6.3 74 494-583 2-76 (99)
456 PF03266 NTPase_1: NTPase; In 95.2 0.12 2.7E-06 51.3 9.7 21 493-513 1-21 (168)
457 cd03700 eEF2_snRNP_like_II EF2 95.2 0.064 1.4E-06 47.9 6.9 62 671-732 3-79 (93)
458 PRK01889 GTPase RsgA; Reviewed 95.0 0.027 5.8E-07 62.4 4.7 26 489-514 193-218 (356)
459 COG0541 Ffh Signal recognition 94.6 0.15 3.3E-06 57.9 9.4 90 489-578 98-225 (451)
460 PF06858 NOG1: Nucleolar GTP-b 94.4 0.082 1.8E-06 44.3 5.1 42 564-605 12-58 (58)
461 TIGR03574 selen_PSTK L-seryl-t 94.1 0.26 5.7E-06 51.3 9.3 150 494-655 2-166 (249)
462 PRK14738 gmk guanylate kinase; 93.9 0.17 3.7E-06 51.5 7.5 26 489-514 11-36 (206)
463 PRK14737 gmk guanylate kinase; 93.8 0.18 3.8E-06 50.9 7.3 26 490-515 3-28 (186)
464 PF05621 TniB: Bacterial TniB 93.8 0.039 8.5E-07 60.0 2.6 100 488-603 58-189 (302)
465 PF13555 AAA_29: P-loop contai 93.6 0.082 1.8E-06 44.8 3.7 23 490-512 22-44 (62)
466 cd02032 Bchl_like This family 93.6 0.5 1.1E-05 49.5 10.4 65 541-606 115-184 (267)
467 COG1161 Predicted GTPases [Gen 93.5 0.27 5.9E-06 53.8 8.6 101 545-655 13-115 (322)
468 PF13207 AAA_17: AAA domain; P 93.4 0.073 1.6E-06 48.4 3.4 22 493-514 1-22 (121)
469 PF08433 KTI12: Chromatin asso 93.4 0.25 5.5E-06 52.9 7.9 151 492-656 2-173 (270)
470 PRK10751 molybdopterin-guanine 93.3 0.35 7.5E-06 48.8 8.3 25 490-514 5-29 (173)
471 PF05729 NACHT: NACHT domain 93.3 0.15 3.2E-06 48.0 5.4 21 493-513 2-22 (166)
472 PF02263 GBP: Guanylate-bindin 93.0 0.13 2.7E-06 54.6 4.9 62 492-554 22-86 (260)
473 cd01120 RecA-like_NTPases RecA 92.7 0.31 6.7E-06 45.3 6.6 21 494-514 2-22 (165)
474 PRK05480 uridine/cytidine kina 92.6 0.1 2.2E-06 52.6 3.5 28 487-514 2-29 (209)
475 PF00005 ABC_tran: ABC transpo 92.3 0.13 2.9E-06 47.7 3.5 27 489-515 9-35 (137)
476 smart00382 AAA ATPases associa 92.3 0.14 3.1E-06 45.3 3.6 25 491-515 2-26 (148)
477 PF03205 MobB: Molybdopterin g 92.3 0.12 2.6E-06 49.9 3.4 23 492-514 1-23 (140)
478 KOG2743 Cobalamin synthesis pr 92.3 0.37 8E-06 52.7 7.2 27 487-513 53-79 (391)
479 COG0194 Gmk Guanylate kinase [ 92.2 0.35 7.6E-06 49.5 6.7 26 490-515 3-28 (191)
480 KOG0446 Vacuolar sorting prote 92.1 0.055 1.2E-06 64.5 1.0 65 542-607 132-212 (657)
481 PF13671 AAA_33: AAA domain; P 91.9 0.14 3.1E-06 47.7 3.2 21 493-513 1-21 (143)
482 TIGR00235 udk uridine kinase. 91.8 0.13 2.9E-06 51.9 3.2 26 488-513 3-28 (207)
483 PRK00300 gmk guanylate kinase; 91.4 0.19 4.2E-06 50.2 3.8 27 488-514 2-28 (205)
484 COG1136 SalX ABC-type antimicr 91.3 0.17 3.7E-06 53.0 3.5 26 488-513 28-53 (226)
485 COG1116 TauB ABC-type nitrate/ 91.3 0.18 3.9E-06 53.5 3.6 26 488-513 26-51 (248)
486 PRK08233 hypothetical protein; 91.2 0.19 4.2E-06 48.7 3.5 24 491-514 3-26 (182)
487 PF13521 AAA_28: AAA domain; P 91.2 0.13 2.8E-06 49.8 2.2 22 493-514 1-22 (163)
488 PF13238 AAA_18: AAA domain; P 91.2 0.19 4.1E-06 45.5 3.1 21 494-514 1-21 (129)
489 KOG4181 Uncharacterized conser 91.0 0.26 5.6E-06 54.7 4.4 23 492-514 189-211 (491)
490 KOG0781 Signal recognition par 90.9 0.35 7.5E-06 55.6 5.5 121 488-608 375-544 (587)
491 PRK07261 topology modulation p 90.8 0.19 4.2E-06 49.7 3.0 21 493-513 2-22 (171)
492 TIGR01360 aden_kin_iso1 adenyl 90.8 0.22 4.8E-06 48.6 3.4 23 491-513 3-25 (188)
493 COG1126 GlnQ ABC-type polar am 90.7 0.22 4.7E-06 52.3 3.4 26 488-513 25-50 (240)
494 cd02019 NK Nucleoside/nucleoti 90.6 0.23 5E-06 42.0 3.0 21 494-514 2-22 (69)
495 TIGR03499 FlhF flagellar biosy 90.6 0.56 1.2E-05 50.3 6.5 26 488-513 191-216 (282)
496 cd03264 ABC_drug_resistance_li 90.4 0.22 4.9E-06 50.1 3.3 24 490-514 25-48 (211)
497 PRK08118 topology modulation p 90.4 0.22 4.8E-06 49.2 3.1 22 492-513 2-23 (167)
498 PRK04195 replication factor C 90.4 0.71 1.5E-05 53.0 7.6 24 491-514 39-62 (482)
499 cd01130 VirB11-like_ATPase Typ 90.4 0.24 5.2E-06 49.4 3.4 27 488-514 22-48 (186)
500 TIGR02322 phosphon_PhnN phosph 90.4 0.24 5.3E-06 48.4 3.3 22 493-514 3-24 (179)
No 1
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-54 Score=474.38 Aligned_cols=320 Identities=55% Similarity=0.808 Sum_probs=288.1
Q ss_pred CccchHHHHHHHhcCCHHHHHHHHHhCCCccccc---ccCCH----HHHHHhhhhcCCeeeecCchhhHHHhhhccccCh
Q 004746 409 EKGMLIEELARNLAIGEGEILGSLYSKGIKPEGV---QTLDK----DMVKMICKDYEVEVLDADPVKMEEMARKKDLFDE 481 (732)
Q Consensus 409 ~~~iav~qLag~Ls~~i~eiik~L~~lG~~~~in---~~Ld~----e~ie~ia~e~~~~~i~~~~~~ieell~~~~~~~e 481 (732)
...+++.+|+..|+..+.++...|++.+...++. ..||. |.+++++.+|++..+..... .++.........+
T Consensus 65 ~~~m~~~kla~~~~~~~~~v~e~l~sv~~a~~~~~~~~~ld~~~I~ev~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~ 143 (683)
T KOG1145|consen 65 WNYMTAAKLAAALKCSVDEVQEALLSVGFAYNLAIADSNLDTKGILEVVELILMKYRFVLLPAETS-VEEKAADVAPQPE 143 (683)
T ss_pred cccccHHHHhhhhcCCHHHHHHHHHhccccccccccccccchHHHHHHHHHHhhccccccCChhhh-hhhhhhhcccCCc
Confidence 3579999999999999999999999998832222 23443 44556677777665543322 2222111223355
Q ss_pred hhhhcccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcc
Q 004746 482 EDLDKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRAR 561 (732)
Q Consensus 482 ~~~~~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r 561 (732)
.+...+.+|+|.|+||||++|||||||++|++..++.++.+||||||++|.+.++ .| ..++|+|||||.+|..||.+
T Consensus 144 a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaR 220 (683)
T KOG1145|consen 144 ADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRAR 220 (683)
T ss_pred cCHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhc
Confidence 6778899999999999999999999999999999999999999999999999987 55 58999999999999999999
Q ss_pred cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 562 ~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+++.+|+++||++++|++++|+.|.|.|++.+++|+||++||||.+++++++++++|..+++..++||++++++++||++
T Consensus 221 GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred cCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcCeeEEEEEEEcCCCCcc
Q 004746 642 GEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRV 721 (732)
Q Consensus 642 GeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~~gkVrsI~~~~g~~V 721 (732)
|.|++.|.++|+.++++++++++|..+++++|+|+..++++|.++|+.|++|||++|+.++||..|+|||+|+|++|+.+
T Consensus 301 g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G~~w~KVr~l~D~nGk~i 380 (683)
T KOG1145|consen 301 GENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAGKSWCKVRALFDHNGKPI 380 (683)
T ss_pred CCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEechhhhhhhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCCeeC
Q 004746 722 DEAGPSIPVQV 732 (732)
Q Consensus 722 ~~A~pG~~V~I 732 (732)
++|.||+||+|
T Consensus 381 ~~A~Ps~pv~V 391 (683)
T KOG1145|consen 381 DEATPSQPVEV 391 (683)
T ss_pred cccCCCCceEe
Confidence 99999999986
No 2
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=2.3e-48 Score=454.74 Aligned_cols=308 Identities=59% Similarity=0.923 Sum_probs=282.1
Q ss_pred CccchHHHHHHHhcCCHHHHHHHHHhCCCcccccccCCHHHHHHhhhhcCCeeeecCchhhHHHhhhccccChhhhhccc
Q 004746 409 EKGMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLE 488 (732)
Q Consensus 409 ~~~iav~qLag~Ls~~i~eiik~L~~lG~~~~in~~Ld~e~ie~ia~e~~~~~i~~~~~~ieell~~~~~~~e~~~~~l~ 488 (732)
++++++.+||.+|+....+|++.||.+|+|+++|+.||+|++++++++|++.+....... ..+...+.
T Consensus 220 ~~~itv~ela~~~~~~~~~ii~~l~~~g~~~~~n~~l~~~~~~~i~~e~g~~~~~~~~~~------------~~~~~~~~ 287 (787)
T PRK05306 220 PETITVAELAEKMAVKAAEVIKKLFKLGVMATINQSLDQETAELLAEEFGHEVKLVSLLE------------DDDEEDLV 287 (787)
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHcCCeecCCCccCHHHHHHHHHHcCCEEEEccccc------------cccccccc
Confidence 689999999999999999999999999999999999999999999999999875432211 12233568
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.|+++|+||||+|||||||+++|+..++..++.+|+|++++.+.+.+ + ++.|+|||||||+.|..++.+++..+|+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~--~--~~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET--N--GGKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE--C--CEEEEEEECCCCccchhHHHhhhhhCCE
Confidence 89999999999999999999999998888888899999999887764 2 3689999999999999999999999999
Q ss_pred EEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHH
Q 004746 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (732)
Q Consensus 569 VILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeL 648 (732)
+|||||+++++++++.+++.++...++|+|||+||+|+.+.+.+++..++..+++..+.|++++++|++||++|.||++|
T Consensus 364 aILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eL 443 (787)
T PRK05306 364 VVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDEL 443 (787)
T ss_pred EEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHH
Confidence 99999999999999999999999999999999999999887788888888888887788888899999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcCeeEEEEEEEcCCCCccceecCCC
Q 004746 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSI 728 (732)
Q Consensus 649 fe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~~gkVrsI~~~~g~~V~~A~pG~ 728 (732)
+++|..+.++.++..+++.++.++|++++.++++|++++++|++|+|+.||.|++|+.+++|++|++++|+.+++|.||+
T Consensus 444 le~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~~~gkVr~m~~~~~~~v~~A~pGd 523 (787)
T PRK05306 444 LEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGTTYGRVRAMVDDNGKRVKEAGPST 523 (787)
T ss_pred HHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEECCcEEEEEEEECCCCCCCCEEcCCC
Confidence 99999877777788889999999999999999999999999999999999999999999999999998899999999999
Q ss_pred CeeC
Q 004746 729 PVQV 732 (732)
Q Consensus 729 ~V~I 732 (732)
+|.|
T Consensus 524 ~V~I 527 (787)
T PRK05306 524 PVEI 527 (787)
T ss_pred eEEE
Confidence 9975
No 3
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=2.7e-47 Score=442.70 Aligned_cols=323 Identities=49% Similarity=0.797 Sum_probs=287.1
Q ss_pred CccchHHHHHHHhcCCHHHHHHHHHhCCCcccccccCCHHHHHHhhhhcCCeeeecCchhhHHHhhhccccChhhhhccc
Q 004746 409 EKGMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLE 488 (732)
Q Consensus 409 ~~~iav~qLag~Ls~~i~eiik~L~~lG~~~~in~~Ld~e~ie~ia~e~~~~~i~~~~~~ieell~~~~~~~e~~~~~l~ 488 (732)
++++++.+||.+|+....+|++.||.+|+|+++|+.||+|+++++|++|++++........+++... ......+...+.
T Consensus 163 ~~~~tv~~la~~~~~~~~~ii~~l~~~g~~~~~n~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 241 (742)
T CHL00189 163 HSPLTIQELSTLLCIPETEIIKSLFLKGISVTVNQIIDISIISQVADDFGINIISEEKNNINEKTSN-LDNTSAFTENSI 241 (742)
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHcCcCccCCCccCHHHHHHHHHHcCCeEEEeccchhhhhhhc-ccccccchhhhc
Confidence 6799999999999999999999999999999999999999999999999998754333322222211 000111234578
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.++++|+||||+|||||||+++|+...+...+.+|+|++++.|.+.+..++..+.|+|||||||+.|..++.+++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 89999999999999999999999998888888899999999988887666667899999999999999999999999999
Q ss_pred EEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHH
Q 004746 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (732)
Q Consensus 569 VILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeL 648 (732)
+|||||++++.++++.+++.++...++|+|||+||+|+...+.+++.+++..+++..+.|++.++++++||++|.||++|
T Consensus 322 aILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeL 401 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKL 401 (742)
T ss_pred EEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHH
Confidence 99999999999999999999999999999999999999877777777777777776777777889999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcCeeEEEEEEEcCCCCccceecCCC
Q 004746 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSI 728 (732)
Q Consensus 649 fe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~~gkVrsI~~~~g~~V~~A~pG~ 728 (732)
+++|..+.++..+..++..++.+.++++.+++++|++++++|++|+|+.||.|++|+.+++|++|++..|+.+++|.||+
T Consensus 402 le~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~~~gkVr~m~~~~~~~v~~a~pgd 481 (742)
T CHL00189 402 LETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGTSYAKIRGMINSLGNKINLATPSS 481 (742)
T ss_pred HHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECCcceEEEEEEcCCCcCccEEcCCC
Confidence 99999888877888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeC
Q 004746 729 PVQV 732 (732)
Q Consensus 729 ~V~I 732 (732)
+|.|
T Consensus 482 iV~I 485 (742)
T CHL00189 482 VVEI 485 (742)
T ss_pred ceEe
Confidence 9976
No 4
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=4.4e-47 Score=433.85 Aligned_cols=317 Identities=56% Similarity=0.852 Sum_probs=282.7
Q ss_pred CccchHHHHHHHhcCCHHHHHHHHHhCCCcccccccCCHHHHHHhhhhcCCeeeecCchhhHHHhhhccccChhhhhccc
Q 004746 409 EKGMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLE 488 (732)
Q Consensus 409 ~~~iav~qLag~Ls~~i~eiik~L~~lG~~~~in~~Ld~e~ie~ia~e~~~~~i~~~~~~ieell~~~~~~~e~~~~~l~ 488 (732)
++++++.+||.+|+....+|++.||.+|+++++|+.||+|++++++++|++++........++.. ...+++...+.
T Consensus 9 ~~~~~v~~la~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 84 (587)
T TIGR00487 9 GGTLTVSELANKMNIKVSDIIKKLMLLGVMVTINQVLDKETAELVAEEFGVKVEVRVTLEETEAE----EQDEDSGDLLV 84 (587)
T ss_pred CCCeEHHHHHHHHCcCHHHHHHHHHHCCCEecCCcCcCHHHHHHHHHHhCCceEEeccchhhhhh----ccccccccccc
Confidence 67999999999999999999999999999999999999999999999999986532222211111 01223344678
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.++++|+|+||+|||||||+++|++.++...+.+|+|++++.+.+.+. + ...++|||||||++|..++.+++..+|+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~--~-~~~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE--D-GKMITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC--C-CcEEEEEECCCCcchhhHHHhhhccCCE
Confidence 899999999999999999999999998888888999999988776652 2 2279999999999999999999999999
Q ss_pred EEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHH
Q 004746 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (732)
Q Consensus 569 VILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeL 648 (732)
+|||||++++..+++.+++.+++..++|+|+++||+|+.+.+.+++.+++...++....|+++++++++||++|+||++|
T Consensus 162 aILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eL 241 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDEL 241 (587)
T ss_pred EEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHH
Confidence 99999999999999999999999899999999999999887888888888888877778888889999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcCeeEEEEEEEcCCCCccceecCCC
Q 004746 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSI 728 (732)
Q Consensus 649 fe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~~gkVrsI~~~~g~~V~~A~pG~ 728 (732)
+++|..+.++..+..+++.++.+.|++++.++++|++++++|.+|+|++||.|++|+.+++||+|++.+|+.+++|.||+
T Consensus 242 l~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~~~kVr~l~~~~g~~v~~a~~g~ 321 (587)
T TIGR00487 242 LDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAAYGRVRAMIDENGKSVKEAGPSK 321 (587)
T ss_pred HHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCCccEEEEEECCCCCCCCEECCCC
Confidence 99999887787888889999999999999999999999999999999999999999999999999998899999999999
Q ss_pred CeeC
Q 004746 729 PVQV 732 (732)
Q Consensus 729 ~V~I 732 (732)
+|.|
T Consensus 322 ~v~i 325 (587)
T TIGR00487 322 PVEI 325 (587)
T ss_pred EEEE
Confidence 9975
No 5
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-47 Score=419.30 Aligned_cols=244 Identities=67% Similarity=1.022 Sum_probs=235.9
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
..|+|.|+||||++|||||||++|++.++...+.+|+||||++|++.+... ....|+|+|||||+.|..||.++++.+|
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-~~~~itFiDTPGHeAFt~mRaRGa~vtD 80 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-KIPGITFIDTPGHEAFTAMRARGASVTD 80 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-CCceEEEEcCCcHHHHHHHHhcCCcccc
Confidence 468999999999999999999999999999999999999999999987532 2346999999999999999999999999
Q ss_pred eEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 568 IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 568 iVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
++|||+|++|++++|+.|.++|++.+++|+||++||||+++.+++++..++.++++..+.|++++.|+++||++|+||++
T Consensus 81 IaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~e 160 (509)
T COG0532 81 IAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDE 160 (509)
T ss_pred EEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcCeeEEEEEEEcCCCCccceecCC
Q 004746 648 LLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPS 727 (732)
Q Consensus 648 Lfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~~gkVrsI~~~~g~~V~~A~pG 727 (732)
|++.|+.+++..+++++|+.++.|+++|+..++|+|.+++++|++|||++||.|++|..||+|++|++..|++++.|.||
T Consensus 161 LL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps 240 (509)
T COG0532 161 LLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPS 240 (509)
T ss_pred HHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEEEccCCCceEEeehhcCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeC
Q 004746 728 IPVQV 732 (732)
Q Consensus 728 ~~V~I 732 (732)
.||+|
T Consensus 241 ~~v~i 245 (509)
T COG0532 241 KPVEI 245 (509)
T ss_pred CCeEE
Confidence 99985
No 6
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=100.00 E-value=5.9e-34 Score=326.04 Aligned_cols=243 Identities=37% Similarity=0.601 Sum_probs=203.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCc--------------ceeEEEEeCCCccc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK--------------LQPCVFLDTPGHEA 554 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk--------------~i~ItLIDTPGhE~ 554 (732)
.|+|.|+|+||+|||||||+|+|++..+...+.+++|++++++.+....... ...++|||||||+.
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 3688999999999999999999999988877888899999887765432110 12389999999999
Q ss_pred cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC-C--------------hHHH-----
Q 004746 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-N--------------PERV----- 614 (732)
Q Consensus 555 f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a-~--------------~erv----- 614 (732)
|..++.+++..+|++|||||+++++.+++.+++.+++..++|+|+++||+|+... . ...+
T Consensus 82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~ 161 (590)
T TIGR00491 82 FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLD 161 (590)
T ss_pred HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999999999999999999998889999999999999531 0 1111
Q ss_pred ------HHHHHHcCCCCC------CCCCCCCEEEEecCCCCCHHHHHHHHHHHHhh---hhhccCCCCCccceEEEEeec
Q 004746 615 ------MQELSSIGLMPE------DWGGDIPMVQISALKGEKVDDLLETIMLVAEL---QELKANPHRNAKGTVIEAGLH 679 (732)
Q Consensus 615 ------~~eL~elgl~~e------~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael---~~lk~~p~r~a~g~Vies~~d 679 (732)
..++.++++..+ +|+++++++++||++|+|+++|+++|..+++. ..++.+++.++.++|++++.+
T Consensus 162 ~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~ 241 (590)
T TIGR00491 162 TKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEE 241 (590)
T ss_pred HHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEEc
Confidence 123456666654 57788999999999999999999999865542 357778899999999999999
Q ss_pred cCCCceEEEEEEeeEEecCCEEEEcCee----EEEEEEEcCC-----------CCccceecCCCCee
Q 004746 680 KSKGPVATFILQNGTLKKGDVVVCGEAF----GKVRALFDDS-----------GNRVDEAGPSIPVQ 731 (732)
Q Consensus 680 kgrG~VatglV~~GtLk~GD~Iv~G~~~----gkVrsI~~~~-----------g~~V~~A~pG~~V~ 731 (732)
+|.|++++++|++|+|++||.|++|+.+ ++||+|.+.+ ++.+.+|.|+..|.
T Consensus 242 ~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~ 308 (590)
T TIGR00491 242 TGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVK 308 (590)
T ss_pred CCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCcee
Confidence 9999999999999999999999998876 5999999885 25677877766553
No 7
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=3.4e-33 Score=320.13 Aligned_cols=246 Identities=44% Similarity=0.658 Sum_probs=206.0
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecC----Ccc-----e-----eEEEEeCCCc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD----GKL-----Q-----PCVFLDTPGH 552 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~id----gk~-----i-----~ItLIDTPGh 552 (732)
+..|+|.|+||||+|||||||+++|++..+...+.+++|++++++.+..... +.. . .++|||||||
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 3568899999999999999999999988777778889999998776543221 111 1 2799999999
Q ss_pred cccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC-CCh--------------H-----
Q 004746 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG-ANP--------------E----- 612 (732)
Q Consensus 553 E~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~-a~~--------------e----- 612 (732)
+.|..++.+++..+|++|||||+++++.+++.+++.++...++|+|+++||+|+.. +.. .
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~ 161 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQE 161 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999889999999999999852 110 1
Q ss_pred ------HHHHHHHHcCCCCC------CCCCCCCEEEEecCCCCCHHHHHHHHHHHHh--h-hhhccCCCCCccceEEEEe
Q 004746 613 ------RVMQELSSIGLMPE------DWGGDIPMVQISALKGEKVDDLLETIMLVAE--L-QELKANPHRNAKGTVIEAG 677 (732)
Q Consensus 613 ------rv~~eL~elgl~~e------~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lae--l-~~lk~~p~r~a~g~Vies~ 677 (732)
++..++...++..+ +|+++++++++||++|+|+++|++.|....+ + ..+..+++.++.++|++++
T Consensus 162 f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~ 241 (586)
T PRK04004 162 LEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVK 241 (586)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEE
Confidence 12234555666554 5678899999999999999999999875543 2 3567778899999999999
Q ss_pred eccCCCceEEEEEEeeEEecCCEEEEcCeeE----EEEEEEcC-----------CCCccceecCCCCeeC
Q 004746 678 LHKSKGPVATFILQNGTLKKGDVVVCGEAFG----KVRALFDD-----------SGNRVDEAGPSIPVQV 732 (732)
Q Consensus 678 ~dkgrG~VatglV~~GtLk~GD~Iv~G~~~g----kVrsI~~~-----------~g~~V~~A~pG~~V~I 732 (732)
.++|+|++++++|++|+|++||.|++++.++ +||+|+++ .++.+++|.|+++|.|
T Consensus 242 ~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i 311 (586)
T PRK04004 242 EERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKI 311 (586)
T ss_pred EeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEE
Confidence 9999999999999999999999999988764 99999986 4688999999999875
No 8
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.97 E-value=1.6e-30 Score=310.84 Aligned_cols=229 Identities=41% Similarity=0.612 Sum_probs=195.2
Q ss_pred HHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCc--------------ceeEEEEeCCCccccchhhcccccccCeE
Q 004746 504 KTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK--------------LQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 504 KSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk--------------~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
|||||++|++.++...+.+||||+|+++.+.+....+ ...++|||||||+.|..++.+++..+|++
T Consensus 474 KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDiv 553 (1049)
T PRK14845 474 NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLA 553 (1049)
T ss_pred cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEE
Confidence 9999999999999999999999999999988642111 11389999999999999999999999999
Q ss_pred EEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCC-CCCh--------------HHHH-----------HHHHHcCC
Q 004746 570 VIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD-GANP--------------ERVM-----------QELSSIGL 623 (732)
Q Consensus 570 ILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~-~a~~--------------erv~-----------~eL~elgl 623 (732)
|||||+++++++++.+++..++..++|+|+|+||+|+. ++.. ++.. .++.++++
T Consensus 554 lLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~ 633 (1049)
T PRK14845 554 VLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGF 633 (1049)
T ss_pred EEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCc
Confidence 99999999999999999999999999999999999995 3321 1222 22345555
Q ss_pred CC------CCCCCCCCEEEEecCCCCCHHHHHHHHHHHHhh---hhhccCCCCCccceEEEEeeccCCCceEEEEEEeeE
Q 004746 624 MP------EDWGGDIPMVQISALKGEKVDDLLETIMLVAEL---QELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGT 694 (732)
Q Consensus 624 ~~------e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael---~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~Gt 694 (732)
.. ++|++.+++|+|||++|+||++|+++|..+++. ..+..+++.++.++|++++.++|.|++++++|.+|+
T Consensus 634 ~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~ 713 (1049)
T PRK14845 634 DADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGT 713 (1049)
T ss_pred chhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeEEEEEEEcCE
Confidence 43 467889999999999999999999999876652 356777888999999999999999999999999999
Q ss_pred EecCCEEEEcCe----eEEEEEEEcC-----------CCCccceecCCCCeeC
Q 004746 695 LKKGDVVVCGEA----FGKVRALFDD-----------SGNRVDEAGPSIPVQV 732 (732)
Q Consensus 695 Lk~GD~Iv~G~~----~gkVrsI~~~-----------~g~~V~~A~pG~~V~I 732 (732)
|++||.|++|+. +++||+|.+. +++.+++|.|+++|.|
T Consensus 714 Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki 766 (1049)
T PRK14845 714 LRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKI 766 (1049)
T ss_pred EecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEE
Confidence 999999999886 8999999853 3568999999999975
No 9
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=1.2e-29 Score=290.91 Aligned_cols=230 Identities=26% Similarity=0.335 Sum_probs=189.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC---CccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKT---KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~---k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
++|+++||+|||||||+++|++. .+.....+|+|+++++..+.+ ++ +.++|||||||+.|..++..++..+|+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~--~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~ 76 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL--PD--YRLGFIDVPGHEKFISNAIAGGGGIDA 76 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe--CC--EEEEEEECCCHHHHHHHHHhhhccCCE
Confidence 47999999999999999999963 334455779999987766554 33 789999999999999999999999999
Q ss_pred EEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCCh-HHHHHHH----HHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANP-ERVMQEL----SSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~~-erv~~eL----~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|||||+++++++++.+++..+...++| +|||+||+|+.+... +....++ ...++ ..++++|++||++|
T Consensus 77 aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-----~~~~~ii~vSA~tG 151 (581)
T TIGR00475 77 ALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-----LKNAKIFKTSAKTG 151 (581)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-----CCCCcEEEEeCCCC
Confidence 9999999999999999999999888999 999999999965321 1122222 22221 12478999999999
Q ss_pred CCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCc
Q 004746 643 EKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNR 720 (732)
Q Consensus 643 eGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~ 720 (732)
+||++++++|..+.+..... ..+.++...|.+++..+|.|+|++|+|.+|+|++||.+.+++ ...+|++|+.+ ++.
T Consensus 152 ~GI~eL~~~L~~l~~~~~~~-~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~-~~~ 229 (581)
T TIGR00475 152 QGIGELKKELKNLLESLDIK-RIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQ-NQD 229 (581)
T ss_pred CCchhHHHHHHHHHHhCCCc-CcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEEC-Ccc
Confidence 99999999998765543322 245678888889998899999999999999999999999965 57899999998 699
Q ss_pred cceecCCCCeeC
Q 004746 721 VDEAGPSIPVQV 732 (732)
Q Consensus 721 V~~A~pG~~V~I 732 (732)
+++|.||++|.|
T Consensus 230 v~~a~aG~rval 241 (581)
T TIGR00475 230 VEIAYAGQRIAL 241 (581)
T ss_pred CCEEECCCEEEE
Confidence 999999999975
No 10
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.96 E-value=6.5e-29 Score=274.37 Aligned_cols=232 Identities=30% Similarity=0.446 Sum_probs=180.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc-------------------------------ccccCCceeeeeeEEEEeec
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-------------------------------AAEAGGITQGIGAYKVQVPV 537 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~-------------------------------vse~~GtTrdI~~y~v~i~i 537 (732)
...++|+|+||+|||||||+++|+..... ....+|+|+++....+.
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~--- 80 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE--- 80 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe---
Confidence 34578999999999999999999843211 12267999998665543
Q ss_pred CCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecC--CCChhhHHHHHHHHhcCC-CEEEEEeCCCCCCCChHH-
Q 004746 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD--GIRPQTNEAIAHAKAAGV-PIVIAINKIDKDGANPER- 613 (732)
Q Consensus 538 dgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasd--gi~~qt~EiL~~ak~~~v-PIIVViNKiDL~~a~~er- 613 (732)
.+++.++|||||||++|...+..++..+|++|||+|+++ ++..++.+++..+...++ ++|+|+||+|+...+.++
T Consensus 81 -~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 81 -TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred -cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHH
Confidence 356789999999999998877778899999999999999 888999999988888887 499999999997543322
Q ss_pred --HHHHH----HHcCCCCCCCCCCCCEEEEecCCCCCHHHH------------HHHHHHHHhhhhhccCCCCCccceEEE
Q 004746 614 --VMQEL----SSIGLMPEDWGGDIPMVQISALKGEKVDDL------------LETIMLVAELQELKANPHRNAKGTVIE 675 (732)
Q Consensus 614 --v~~eL----~elgl~~e~~gg~ipiVeVSAKtGeGIdeL------------fe~Ii~lael~~lk~~p~r~a~g~Vie 675 (732)
...++ ...++.. ..++++++||++|+||+++ ++.|.. +.......+.++...|.+
T Consensus 160 ~~~~~~i~~~l~~~g~~~----~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~---~~~~~~~~~~p~r~~i~~ 232 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKP----DDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN---LKPPEKPTDKPLRIPIQD 232 (425)
T ss_pred HHHHHHHHHHHHhhCCCc----CcceEEEeecccCCCccccccCCCcccHHHHHHHHhc---CCCCccccCCCcEEEEEE
Confidence 22222 2233321 1368999999999999874 444321 222222345788889999
Q ss_pred EeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 676 AGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 676 s~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
++..++.|+|++|+|.+|+|++||.|.+++ ...+|++|+.+ ++.++.|.||+.|.|
T Consensus 233 ~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i 290 (425)
T PRK12317 233 VYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMH-HEELPQAEPGDNIGF 290 (425)
T ss_pred EEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEEC-CcccCEECCCCeEEE
Confidence 999999999999999999999999999954 57899999998 589999999999864
No 11
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.96 E-value=1.7e-28 Score=282.91 Aligned_cols=231 Identities=27% Similarity=0.387 Sum_probs=184.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC---CccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKT---KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~---k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
+.|+++||+|||||||+++|.+. ++......|+|+++++..+... .+..++|||||||+.|...+..++..+|+
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~---~g~~i~~IDtPGhe~fi~~m~~g~~~~D~ 77 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP---DGRVLGFIDVPGHEKFLSNMLAGVGGIDH 77 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC---CCcEEEEEECCCHHHHHHHHHHHhhcCCE
Confidence 36899999999999999999963 3344556799999876654431 23468999999999999888888999999
Q ss_pred EEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCC-CCCCEEEEecCCCCCH
Q 004746 569 AVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN-PERVMQELSSIGLMPEDWG-GDIPMVQISALKGEKV 645 (732)
Q Consensus 569 VILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~-~erv~~eL~elgl~~e~~g-g~ipiVeVSAKtGeGI 645 (732)
++||||+++++++|+.+++..+...++| +|||+||+|+.+.. .+.+..++... ...++ ...++|++||++|+||
T Consensus 78 ~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~---l~~~~~~~~~ii~VSA~tG~gI 154 (614)
T PRK10512 78 ALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAV---LREYGFAEAKLFVTAATEGRGI 154 (614)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHH---HHhcCCCCCcEEEEeCCCCCCC
Confidence 9999999999999999999999888888 58999999996421 22222333221 00001 2468999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccce
Q 004746 646 DDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDE 723 (732)
Q Consensus 646 deLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~ 723 (732)
++|++.|..+... ....+.++...|.+++..+|.|+|++|+|.+|+|++||.|.+.+ ...+|++|+.+ ++.+++
T Consensus 155 ~~L~~~L~~~~~~---~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~-~~~v~~ 230 (614)
T PRK10512 155 DALREHLLQLPER---EHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQ-NQPTEQ 230 (614)
T ss_pred HHHHHHHHHhhcc---ccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecC-CcCCCE
Confidence 9999999865322 22355678888889998999999999999999999999999844 46799999999 689999
Q ss_pred ecCCCCeeC
Q 004746 724 AGPSIPVQV 732 (732)
Q Consensus 724 A~pG~~V~I 732 (732)
|.||++|.|
T Consensus 231 a~aG~rval 239 (614)
T PRK10512 231 AQAGQRIAL 239 (614)
T ss_pred EeCCCeEEE
Confidence 999999864
No 12
>PRK12736 elongation factor Tu; Reviewed
Probab=99.96 E-value=8.1e-28 Score=264.02 Aligned_cols=234 Identities=29% Similarity=0.330 Sum_probs=183.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCC-------c---------cccccCCceeeeeeEEEEeecCCcceeEEEEeCCC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK-------V---------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k-------~---------~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG 551 (732)
.+..++|+|+||+|||||||+++|++.. + ......|+|++..... +..+...++||||||
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~----~~~~~~~i~~iDtPG 84 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVE----YETEKRHYAHVDCPG 84 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeE----ecCCCcEEEEEECCC
Confidence 4456789999999999999999998521 0 1223678888874333 333456899999999
Q ss_pred ccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCC--hH----HHHHHHHHcCCC
Q 004746 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN--PE----RVMQELSSIGLM 624 (732)
Q Consensus 552 hE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~--~e----rv~~eL~elgl~ 624 (732)
|++|...+..++..+|++|||+|+++++..++.+++..+...++| +|+|+||+|+.... .+ ++...+...++.
T Consensus 85 h~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 999998888888999999999999999999999999999999999 68899999986321 11 112222233332
Q ss_pred CCCCCCCCCEEEEecCCCC--------CHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEe
Q 004746 625 PEDWGGDIPMVQISALKGE--------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLK 696 (732)
Q Consensus 625 ~e~~gg~ipiVeVSAKtGe--------GIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk 696 (732)
. ..++++++||++|. ++++|++.|..... ......+.++...|.+++.+++.|+|++|+|.+|+|+
T Consensus 165 ~----~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp--~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~ 238 (394)
T PRK12736 165 G----DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP--TPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVK 238 (394)
T ss_pred c----CCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC--CCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEe
Confidence 1 24789999999983 57788887775432 2223456788889999999999999999999999999
Q ss_pred cCCEEEEcC----eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 697 KGDVVVCGE----AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 697 ~GD~Iv~G~----~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
.||.|++.+ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 239 ~gd~v~i~p~~~~~~~~V~sI~~~-~~~~~~a~aGd~v~l 277 (394)
T PRK12736 239 VGDEVEIVGIKETQKTVVTGVEMF-RKLLDEGQAGDNVGV 277 (394)
T ss_pred cCCEEEEecCCCCeEEEEEEEEEC-CEEccEECCCCEEEE
Confidence 999998843 45899999998 689999999998864
No 13
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.96 E-value=7.9e-28 Score=266.02 Aligned_cols=233 Identities=28% Similarity=0.452 Sum_probs=179.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCC--cc-----------------------------ccccCCceeeeeeEEEEee
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK--VA-----------------------------AAEAGGITQGIGAYKVQVP 536 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k--~~-----------------------------vse~~GtTrdI~~y~v~i~ 536 (732)
....++|+|+||+|+|||||+++|+... +. .....|+|+++....+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~-- 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE-- 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc--
Confidence 3455789999999999999999998421 10 12355888887665543
Q ss_pred cCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCC---CChhhHHHHHHHHhcCC-CEEEEEeCCCCCCCChH
Q 004746 537 VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG---IRPQTNEAIAHAKAAGV-PIVIAINKIDKDGANPE 612 (732)
Q Consensus 537 idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdg---i~~qt~EiL~~ak~~~v-PIIVViNKiDL~~a~~e 612 (732)
...+.++|||||||+.|...+..++..+|++|||||++++ ...++.+++..+...++ ++|||+||+|+...+.+
T Consensus 82 --~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 82 --TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEE 159 (426)
T ss_pred --cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHH
Confidence 3457899999999999988888888999999999999998 77788887777766665 58999999999754333
Q ss_pred HH---HHH----HHHcCCCCCCCCCCCCEEEEecCCCCCHHH------------HHHHHHHHHhhhhhccCCCCCccceE
Q 004746 613 RV---MQE----LSSIGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRNAKGTV 673 (732)
Q Consensus 613 rv---~~e----L~elgl~~e~~gg~ipiVeVSAKtGeGIde------------Lfe~Ii~lael~~lk~~p~r~a~g~V 673 (732)
++ ..+ +...++.. ..++++++||++|.||++ |++.|.. +.......+.++...|
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~----~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~---~~~~~~~~~~p~r~~i 232 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNP----DTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA---LEPPEKPTDKPLRIPI 232 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCc----ccceEEEeeccccccccccccCCccccchHHHHHHhc---CCCCCCccCCCcEEEE
Confidence 22 222 22233221 246899999999999986 5555532 2222223456788899
Q ss_pred EEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 674 IEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 674 ies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
.+++..+|.|+|++|+|.+|+|++||.|.+++ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 233 ~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i 292 (426)
T TIGR00483 233 QDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMH-HEQIEQAEPGDNIGF 292 (426)
T ss_pred EEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEEC-CcccCEEcCCCEEEE
Confidence 99999999999999999999999999999954 57899999998 589999999999864
No 14
>PRK12735 elongation factor Tu; Reviewed
Probab=99.96 E-value=1.6e-27 Score=261.82 Aligned_cols=233 Identities=30% Similarity=0.328 Sum_probs=181.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC-------Cc---------cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT-------KV---------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~-------k~---------~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
+..++|+|+||+|||||||+++|++. ++ ......|+|++.....+ ..++..++|+|||||
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~----~~~~~~i~~iDtPGh 85 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEY----ETANRHYAHVDCPGH 85 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEE----cCCCcEEEEEECCCH
Confidence 34478999999999999999999852 11 12336788988644332 334557999999999
Q ss_pred cccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEE-EEEeCCCCCCCC--hHHHHHH----HHHcCCCC
Q 004746 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDKDGAN--PERVMQE----LSSIGLMP 625 (732)
Q Consensus 553 E~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPII-VViNKiDL~~a~--~erv~~e----L~elgl~~ 625 (732)
++|...+..++..+|++|||+|+.+++..++.+++..+...++|.| +++||+|+.... .+.+..+ +...++.
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~- 164 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP- 164 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC-
Confidence 9998888888999999999999999999999999999998999955 689999996421 1111122 2223321
Q ss_pred CCCCCCCCEEEEecCCCC----------CHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEE
Q 004746 626 EDWGGDIPMVQISALKGE----------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTL 695 (732)
Q Consensus 626 e~~gg~ipiVeVSAKtGe----------GIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtL 695 (732)
+.+++++++||++|. ++..|++.|..... ......+.++...|.+++..+|.|+|++|+|.+|+|
T Consensus 165 ---~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~--~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i 239 (396)
T PRK12735 165 ---GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP--EPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIV 239 (396)
T ss_pred ---cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC--CCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEE
Confidence 125789999999994 67888888876432 122345678888999999999999999999999999
Q ss_pred ecCCEEEEcC----eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 696 KKGDVVVCGE----AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 696 k~GD~Iv~G~----~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
++||.|.+.+ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 240 ~~gd~v~i~p~~~~~~~~VksI~~~-~~~v~~a~aGd~v~l 279 (396)
T PRK12735 240 KVGDEVEIVGIKETQKTTVTGVEMF-RKLLDEGQAGDNVGV 279 (396)
T ss_pred eCCCEEEEecCCCCeEEEEEEEEEC-CeEeCEECCCCEEEE
Confidence 9999998853 46789999998 689999999999864
No 15
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.95 E-value=1.2e-27 Score=266.73 Aligned_cols=232 Identities=27% Similarity=0.370 Sum_probs=182.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCC-------------------------------ccccccCCceeeeeeEEEEeec
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK-------------------------------VAAAEAGGITQGIGAYKVQVPV 537 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k-------------------------------~~vse~~GtTrdI~~y~v~i~i 537 (732)
....+|+++||+++|||||+.+|+... .......|+|+++.++.++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~--- 81 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE--- 81 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc---
Confidence 344689999999999999999997411 0122456888888665543
Q ss_pred CCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCC-------ChhhHHHHHHHHhcCCC-EEEEEeCCCCCC-
Q 004746 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-------RPQTNEAIAHAKAAGVP-IVIAINKIDKDG- 608 (732)
Q Consensus 538 dgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi-------~~qt~EiL~~ak~~~vP-IIVViNKiDL~~- 608 (732)
.+++.++|+|||||++|...+..++..+|++|||+|+++++ ..|+.+++..+...++| +||++||+|+..
T Consensus 82 -~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 82 -TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTV 160 (446)
T ss_pred -cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 45678999999999999999999999999999999999987 47999999999999998 679999999532
Q ss_pred -CC---hHHHHHHHHH----cCCCCCCCCCCCCEEEEecCCCCCHHH------------HHHHHHHHHhhhhhccCCCCC
Q 004746 609 -AN---PERVMQELSS----IGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRN 668 (732)
Q Consensus 609 -a~---~erv~~eL~e----lgl~~e~~gg~ipiVeVSAKtGeGIde------------Lfe~Ii~lael~~lk~~p~r~ 668 (732)
.+ .+++..++.. .++.. .+++||++||.+|+||.+ |++.|..+ .......+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~----~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~---~~~~~~~~~p 233 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNP----EKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL---EPPKRPVDKP 233 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCc----ccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC---CCCCcCCCCC
Confidence 22 2333333332 23321 248999999999999964 66665432 1122234567
Q ss_pred ccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 669 a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+...|.+++..+|.|+|++|+|.+|+|++||.|++++ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 234 ~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i 298 (446)
T PTZ00141 234 LRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMH-HEQLAEAVPGDNVGF 298 (446)
T ss_pred eEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEec-CcccCEECCCCEEEE
Confidence 8888999999999999999999999999999999965 56899999998 589999999999875
No 16
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.95 E-value=2.7e-27 Score=259.64 Aligned_cols=233 Identities=27% Similarity=0.314 Sum_probs=175.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC----------------CccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT----------------KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~----------------k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
+..++|+|+||+|||||||+++|++. ........|+|++..... +...+..++|||||||
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~----~~~~~~~~~liDtpGh 85 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVE----YETENRHYAHVDCPGH 85 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEE----EcCCCEEEEEEECCch
Confidence 44578999999999999999999732 011234578998864333 3345568999999999
Q ss_pred cccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEE-EEEeCCCCCCCC--hH----HHHHHHHHcCCCC
Q 004746 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDKDGAN--PE----RVMQELSSIGLMP 625 (732)
Q Consensus 553 E~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPII-VViNKiDL~~a~--~e----rv~~eL~elgl~~ 625 (732)
++|...+..++..+|++|||+|+++++..++.+++..+...++|.+ +|+||+|+.+.. .+ ++...+...++.
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~- 164 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP- 164 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC-
Confidence 9999888888899999999999999999999999999999999965 689999986421 11 112222222321
Q ss_pred CCCCCCCCEEEEecCCCC-CHH-------HHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEec
Q 004746 626 EDWGGDIPMVQISALKGE-KVD-------DLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKK 697 (732)
Q Consensus 626 e~~gg~ipiVeVSAKtGe-GId-------eLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~ 697 (732)
+..++++++||++|. |.. .|+++|.... .....+.+.++...|.+++.+++.|+|++|+|.+|+|++
T Consensus 165 ---~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~--~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~ 239 (394)
T TIGR00485 165 ---GDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI--PTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKV 239 (394)
T ss_pred ---ccCccEEECccccccccCCchhHhHHHHHHHHHhcC--CCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeC
Confidence 124799999999985 333 3443333211 111223456788899999999999999999999999999
Q ss_pred CCEEEEcC----eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 698 GDVVVCGE----AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 698 GD~Iv~G~----~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
||.|.+.+ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 240 gd~v~i~p~~~~~~~~VksI~~~-~~~~~~a~aGd~v~l 277 (394)
T TIGR00485 240 GEEVEIVGLKDTRKTTVTGVEMF-RKELDEGRAGDNVGL 277 (394)
T ss_pred CCEEEEecCCCCcEEEEEEEEEC-CeEEEEECCCCEEEE
Confidence 99998843 46799999998 589999999999864
No 17
>CHL00071 tufA elongation factor Tu
Probab=99.95 E-value=4.3e-27 Score=259.43 Aligned_cols=233 Identities=30% Similarity=0.337 Sum_probs=179.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc----------------cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV----------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~----------------~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
...++|+|+||+|||||||+++|++... .....+|+|++.....+ ..++..+.|+|||||
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~----~~~~~~~~~iDtPGh 85 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEY----ETENRHYAHVDCPGH 85 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEE----ccCCeEEEEEECCCh
Confidence 4457899999999999999999985311 12345788888654332 334568999999999
Q ss_pred cccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCCh--H----HHHHHHHHcCCCC
Q 004746 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANP--E----RVMQELSSIGLMP 625 (732)
Q Consensus 553 E~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~~--e----rv~~eL~elgl~~ 625 (732)
.+|...+..++..+|+++||+|+.+++..++.+++..+...++| +|+++||+|+..... + ++...+...++..
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~ 165 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG 165 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99988888889999999999999999999999999999999999 779999999964221 1 1222233333321
Q ss_pred CCCCCCCCEEEEecCCCCC------------------HHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEE
Q 004746 626 EDWGGDIPMVQISALKGEK------------------VDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVAT 687 (732)
Q Consensus 626 e~~gg~ipiVeVSAKtGeG------------------IdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~Vat 687 (732)
..++++++||++|.| +..|++.|..... ......+.++...|.+++.+++.|+|++
T Consensus 166 ----~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~--~p~~~~~~p~r~~I~~v~~~~g~G~Vv~ 239 (409)
T CHL00071 166 ----DDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP--TPERDTDKPFLMAIEDVFSITGRGTVAT 239 (409)
T ss_pred ----CcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC--CCCCCCCCCEEEEEEEEEEeCCCeEEEE
Confidence 247899999999974 3455555543321 1123345778889999999999999999
Q ss_pred EEEEeeEEecCCEEEEc----CeeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 688 FILQNGTLKKGDVVVCG----EAFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 688 glV~~GtLk~GD~Iv~G----~~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
|+|.+|+|+.||.+.+. ....+|++|+.+ ++.+++|.||+.|.|
T Consensus 240 G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~-~~~v~~a~aGd~v~i 287 (409)
T CHL00071 240 GRIERGTVKVGDTVEIVGLRETKTTTVTGLEMF-QKTLDEGLAGDNVGI 287 (409)
T ss_pred EEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEc-CcCCCEECCCceeEE
Confidence 99999999999999862 245799999988 579999999999864
No 18
>PLN03127 Elongation factor Tu; Provisional
Probab=99.95 E-value=4.6e-27 Score=262.18 Aligned_cols=234 Identities=28% Similarity=0.331 Sum_probs=180.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC------C----------ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT------K----------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~------k----------~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG 551 (732)
.+..++|+|+||+|||||||+++|.+. . ......+|+|++.....+ ..++..++|+||||
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~----~~~~~~i~~iDtPG 133 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEY----ETAKRHYAHVDCPG 133 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEE----cCCCeEEEEEECCC
Confidence 345678999999999999999999621 1 112345789988754443 33456899999999
Q ss_pred ccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCC--hHHHHHHHHH----cCCC
Q 004746 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN--PERVMQELSS----IGLM 624 (732)
Q Consensus 552 hE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~--~erv~~eL~e----lgl~ 624 (732)
|.+|...+..++..+|+++||+|+++++..|+.+++..+...++| +|+++||+|+.+.. .+.+..++.+ .++.
T Consensus 134 h~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 134 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred ccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 999988888888889999999999999999999999999999999 57899999996421 1111112222 2221
Q ss_pred CCCCCCCCCEEEEecC---CCCC-------HHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeE
Q 004746 625 PEDWGGDIPMVQISAL---KGEK-------VDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGT 694 (732)
Q Consensus 625 ~e~~gg~ipiVeVSAK---tGeG-------IdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~Gt 694 (732)
...++++++||. +|.| +.+|+++|..... ......+.++...|.+++..+|.|+|++|+|.+|.
T Consensus 214 ----~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp--~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~ 287 (447)
T PLN03127 214 ----GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP--EPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGT 287 (447)
T ss_pred ----CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC--CCCcccccceEeeEEEEEEcCCceEEEEEEEEccE
Confidence 235789999886 5555 6788888775432 22233456788889999999999999999999999
Q ss_pred EecCCEEEEc------CeeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 695 LKKGDVVVCG------EAFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 695 Lk~GD~Iv~G------~~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
|++||.|.+. ....+|++|+.+ ++.+++|.||+.|.|
T Consensus 288 i~~Gd~v~i~p~~~~g~~~~~VksI~~~-~~~v~~a~aGd~v~l 330 (447)
T PLN03127 288 IKVGEEVEIVGLRPGGPLKTTVTGVEMF-KKILDQGQAGDNVGL 330 (447)
T ss_pred EecCCEEEEcccCCCCcEEEEEEEEEEE-CcEeCEEcCCCEEEE
Confidence 9999999774 346899999988 589999999999864
No 19
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.95 E-value=4.8e-27 Score=262.07 Aligned_cols=232 Identities=27% Similarity=0.376 Sum_probs=181.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc-------------------------------cccccCCceeeeeeEEEEeec
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-------------------------------AAAEAGGITQGIGAYKVQVPV 537 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~-------------------------------~vse~~GtTrdI~~y~v~i~i 537 (732)
+...+|+++||.++|||||+.+|+...- ......|+|.++.++.+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~---- 80 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF---- 80 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe----
Confidence 3456899999999999999999873110 11235688888765554
Q ss_pred CCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCC-------ChhhHHHHHHHHhcCCC-EEEEEeCCCCCC-
Q 004746 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-------RPQTNEAIAHAKAAGVP-IVIAINKIDKDG- 608 (732)
Q Consensus 538 dgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi-------~~qt~EiL~~ak~~~vP-IIVViNKiDL~~- 608 (732)
...++.++|+|||||++|...+..++..+|++|||+|++++. ..|+.+++..+...++| +||++||+|+..
T Consensus 81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160 (447)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCch
Confidence 345678999999999999999999999999999999999873 27999999999999996 789999999862
Q ss_pred -CC---hHHHHHH----HHHcCCCCCCCCCCCCEEEEecCCCCCHHH------------HHHHHHHHHhhhhhccCCCCC
Q 004746 609 -AN---PERVMQE----LSSIGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRN 668 (732)
Q Consensus 609 -a~---~erv~~e----L~elgl~~e~~gg~ipiVeVSAKtGeGIde------------Lfe~Ii~lael~~lk~~p~r~ 668 (732)
.. .+++.++ +.+.++... +++|+++||++|+||.+ |++.|.. +.......+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~----~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~---i~~p~~~~~~p 233 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPD----KIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ---INEPKRPSDKP 233 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcc----cceEEEEeccccccccccccCCcccchHHHHHHHhh---cCCCccccCCC
Confidence 22 2222333 333444322 47899999999999864 4444432 22223345678
Q ss_pred ccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 669 a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+...|.+++..++.|+|++|+|.+|+|++||.|++++ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 234 lr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~-~~~v~~a~aGd~v~i 298 (447)
T PLN00043 234 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMH-HESLQEALPGDNVGF 298 (447)
T ss_pred cEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEEC-CeEeCEecCCCeEEE
Confidence 8889999999999999999999999999999999976 46899999998 589999999999864
No 20
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.95 E-value=2e-27 Score=265.59 Aligned_cols=237 Identities=26% Similarity=0.348 Sum_probs=181.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCC---ccccccCCceeeeeeEEEEe-------------ecCCc--------------
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTK---VAAAEAGGITQGIGAYKVQV-------------PVDGK-------------- 540 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k---~~vse~~GtTrdI~~y~v~i-------------~idgk-------------- 540 (732)
..+|+++||++||||||+.+|.+.. +..+...|+|+++++..... .+...
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 4689999999999999999999643 34566789999988764421 01100
Q ss_pred --ceeEEEEeCCCccccchhhcccccccCeEEEEEEecCC-CChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCC-hHHHH
Q 004746 541 --LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN-PERVM 615 (732)
Q Consensus 541 --~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdg-i~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~-~erv~ 615 (732)
...++|+|||||++|...+..++..+|++|||+|++++ +++|+.+++..+...+++ +|+|+||+|+.+.. .++..
T Consensus 114 ~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~ 193 (460)
T PTZ00327 114 TLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQY 193 (460)
T ss_pred cccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHH
Confidence 24689999999999999999999999999999999986 799999999988888886 89999999996421 22223
Q ss_pred HHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeecc--------CCCceEE
Q 004746 616 QELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHK--------SKGPVAT 687 (732)
Q Consensus 616 ~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dk--------grG~Vat 687 (732)
.++..+ ....+...+++|++||++|+||+.|++.|...... .....+.++...|.+++... ++|+|++
T Consensus 194 ~ei~~~--l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~--~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~ 269 (460)
T PTZ00327 194 EEIRNF--VKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI--PKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAG 269 (460)
T ss_pred HHHHHH--HHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC--CCCCCCCCcEEEEEEEEeecccCCcccCCceEEEE
Confidence 333221 00112245799999999999999999999853322 22233556667777666433 3799999
Q ss_pred EEEEeeEEecCCEEEEcCe---------------eEEEEEEEcCCCCccceecCCCCeeC
Q 004746 688 FILQNGTLKKGDVVVCGEA---------------FGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 688 glV~~GtLk~GD~Iv~G~~---------------~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
|+|.+|+|++||.|.+++. ..+|++|+.+ ++.+++|.||+.|.|
T Consensus 270 G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~-~~~v~~a~aG~~vai 328 (460)
T PTZ00327 270 GSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAE-NNELQYAVPGGLIGV 328 (460)
T ss_pred EEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEEC-CeECCEEcCCCEEEE
Confidence 9999999999999999763 4699999988 689999999998864
No 21
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.95 E-value=8.8e-27 Score=267.91 Aligned_cols=232 Identities=28% Similarity=0.353 Sum_probs=182.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCcc---------------ccccCCceeeeeeEEEEee-cCCcceeEEEEeCCCccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA---------------AAEAGGITQGIGAYKVQVP-VDGKLQPCVFLDTPGHEA 554 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~---------------vse~~GtTrdI~~y~v~i~-idgk~i~ItLIDTPGhE~ 554 (732)
..+|+|+||+|||||||+++|+..... .....|+|.......+.+. .++..+.++|||||||++
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 468999999999999999999864211 0123467766544444332 145668999999999999
Q ss_pred cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCCCCCCCCCCC
Q 004746 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDIP 633 (732)
Q Consensus 555 f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~~e~~gg~ip 633 (732)
|..++.+++..+|++|||||++++...++.+.+..+...++|+|+|+||+|+...+.++...++... ++. ...
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~------~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD------ASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC------cce
Confidence 9999999999999999999999999999988887777788999999999999766655555555432 221 125
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEE
Q 004746 634 MVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVR 711 (732)
Q Consensus 634 iVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVr 711 (732)
++++||++|.||++||++|.... +....+++.++.+.|++++.++++|.+++++|.+|+|+.||.|.+.+ ...+|.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l--p~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~ 234 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV--PPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVD 234 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC--CCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEe
Confidence 89999999999999999998643 33445677889999999999999999999999999999999998833 345777
Q ss_pred EEEcCCC--CccceecCCCCe
Q 004746 712 ALFDDSG--NRVDEAGPSIPV 730 (732)
Q Consensus 712 sI~~~~g--~~V~~A~pG~~V 730 (732)
.|....+ ..+++|.||+.+
T Consensus 235 ~i~~~~~~~~~v~~~~aGdIg 255 (595)
T TIGR01393 235 EVGVFTPKLTKTDELSAGEVG 255 (595)
T ss_pred EEEEecCCceECCEEcCCCEE
Confidence 7765433 567899999943
No 22
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.95 E-value=5.4e-27 Score=269.44 Aligned_cols=233 Identities=29% Similarity=0.378 Sum_probs=186.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCC--cc--------------ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTK--VA--------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF 555 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k--~~--------------vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f 555 (732)
.+|+|+||++||||||+++|+... +. .....|+|+......+. ++++.|+|||||||.+|
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~----~~~~kinlIDTPGh~DF 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR----YNGTKINIVDTPGHADF 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE----ECCEEEEEEECCCHHHH
Confidence 489999999999999999998531 11 12345677665444333 34679999999999999
Q ss_pred chhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHH----cCCCCCCCCCC
Q 004746 556 GAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS----IGLMPEDWGGD 631 (732)
Q Consensus 556 ~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~e----lgl~~e~~gg~ 631 (732)
...+.++++.+|++|||||+.++...|+.+++..+...++|+|||+||+|+.....+++..++.. ++...+ ...
T Consensus 78 ~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e--~l~ 155 (594)
T TIGR01394 78 GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDE--QLD 155 (594)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccc--ccc
Confidence 99999999999999999999999999999999999999999999999999977666555444332 222111 124
Q ss_pred CCEEEEecCCCC----------CHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEE
Q 004746 632 IPMVQISALKGE----------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVV 701 (732)
Q Consensus 632 ipiVeVSAKtGe----------GIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~I 701 (732)
++++++||++|. |++.||+.|+... +....+++.++...|+.+..+++.|.++.|+|.+|+|+.||.|
T Consensus 156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l--P~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V 233 (594)
T TIGR01394 156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV--PAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQV 233 (594)
T ss_pred CcEEechhhcCcccccCcccccCHHHHHHHHHHhC--CCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEE
Confidence 789999999996 8999999998654 2333456788999999999999999999999999999999999
Q ss_pred EEcCe-----eEEEEEEEcCC---CCccceecCCCCeeC
Q 004746 702 VCGEA-----FGKVRALFDDS---GNRVDEAGPSIPVQV 732 (732)
Q Consensus 702 v~G~~-----~gkVrsI~~~~---g~~V~~A~pG~~V~I 732 (732)
.+.+. ..+|.+|+... ...+++|.||+.|.|
T Consensus 234 ~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i 272 (594)
T TIGR01394 234 ALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAV 272 (594)
T ss_pred EEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEE
Confidence 98543 46899998653 357999999998864
No 23
>PRK00049 elongation factor Tu; Reviewed
Probab=99.95 E-value=9.3e-27 Score=255.91 Aligned_cols=233 Identities=28% Similarity=0.315 Sum_probs=181.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc----------------cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV----------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~----------------~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
+..++|+|+||+|||||||+++|++... .....+|+|++..... +..++..++|+|||||
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~----~~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVE----YETEKRHYAHVDCPGH 85 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEE----EcCCCeEEEEEECCCH
Confidence 3457899999999999999999986210 1223678898875433 2334568999999999
Q ss_pred cccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEE-EEEeCCCCCCCC--hHHHHHH----HHHcCCCC
Q 004746 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDKDGAN--PERVMQE----LSSIGLMP 625 (732)
Q Consensus 553 E~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPII-VViNKiDL~~a~--~erv~~e----L~elgl~~ 625 (732)
.+|......++..+|+++||+|+.+++..++.+++.++...++|+| +++||+|+.... .+.+..+ +...++.
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~- 164 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP- 164 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC-
Confidence 9998888888999999999999999999999999999999999975 689999996421 1112222 2223331
Q ss_pred CCCCCCCCEEEEecCCCC----------CHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEE
Q 004746 626 EDWGGDIPMVQISALKGE----------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTL 695 (732)
Q Consensus 626 e~~gg~ipiVeVSAKtGe----------GIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtL 695 (732)
..+++++++||++|. |+..|++.|...... .....+.++...|.+++..+|.|+|++|+|.+|+|
T Consensus 165 ---~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~--p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i 239 (396)
T PRK00049 165 ---GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPT--PERAIDKPFLMPIEDVFSISGRGTVVTGRVERGII 239 (396)
T ss_pred ---ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCC--CCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEE
Confidence 235899999999985 567788777754221 22234577888899999999999999999999999
Q ss_pred ecCCEEEEc----CeeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 696 KKGDVVVCG----EAFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 696 k~GD~Iv~G----~~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
++||.+.+. ....+|++|+.+ ++.+++|.||+.|.|
T Consensus 240 ~~gd~v~i~p~~~~~~~~VksI~~~-~~~~~~a~~Gd~v~l 279 (396)
T PRK00049 240 KVGEEVEIVGIRDTQKTTVTGVEMF-RKLLDEGQAGDNVGA 279 (396)
T ss_pred ecCCEEEEeecCCCceEEEEEEEEC-CcEeCEEcCCCEEEE
Confidence 999999874 356899999988 589999999999864
No 24
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.95 E-value=8.9e-27 Score=256.73 Aligned_cols=237 Identities=29% Similarity=0.382 Sum_probs=179.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCc---cccccCCceeeeeeEEEEee------------c----CC------cceeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKV---AAAEAGGITQGIGAYKVQVP------------V----DG------KLQPCV 545 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~---~vse~~GtTrdI~~y~v~i~------------i----dg------k~i~It 545 (732)
.++|+++||+|||||||+++|..... ......|+|.++++...... . ++ ....++
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 46899999999999999999975322 23345678887764432211 0 11 146799
Q ss_pred EEeCCCccccchhhcccccccCeEEEEEEecCCC-ChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCChH-HHHHHHHHcC
Q 004746 546 FLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-RPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPE-RVMQELSSIG 622 (732)
Q Consensus 546 LIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi-~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~~e-rv~~eL~elg 622 (732)
|||||||++|...+..++..+|++|||||++++. ..++.+++..+...+++ +|+|+||+|+...... ....++..+
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~- 162 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEF- 162 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhh-
Confidence 9999999999999988899999999999999988 88999999888877764 8999999999653211 112222221
Q ss_pred CCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccC--------CCceEEEEEEeeE
Q 004746 623 LMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKS--------KGPVATFILQNGT 694 (732)
Q Consensus 623 l~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkg--------rG~VatglV~~Gt 694 (732)
....+...++++++||++|+|+++|+++|..... ....+.+.++...|.+++...+ +|+|++|+|.+|+
T Consensus 163 -l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~--~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~ 239 (406)
T TIGR03680 163 -VKGTVAENAPIIPVSALHNANIDALLEAIEKFIP--TPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGK 239 (406)
T ss_pred -hhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC--CCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCE
Confidence 1111223578999999999999999999986432 2233346678888888774433 6889999999999
Q ss_pred EecCCEEEEcCe--------------eEEEEEEEcCCCCccceecCCCCeeC
Q 004746 695 LKKGDVVVCGEA--------------FGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 695 Lk~GD~Iv~G~~--------------~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
|++||.|.+++. ..+|++|+.+ ++++++|.||+.|.|
T Consensus 240 i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~-~~~~~~a~~G~~v~i 290 (406)
T TIGR03680 240 LKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAG-GYKVEEARPGGLVGV 290 (406)
T ss_pred EeCCCEEEEccCccccccccccccccceEEeEEEEC-CEECCEEcCCCEEEE
Confidence 999999999754 3589999988 689999999999864
No 25
>PLN03126 Elongation factor Tu; Provisional
Probab=99.95 E-value=1.1e-26 Score=260.91 Aligned_cols=234 Identities=29% Similarity=0.306 Sum_probs=180.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCC----------------ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK----------------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k----------------~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG 551 (732)
.+..++|+++||+|||||||+++|+... .......|+|++.....+. .++..++||||||
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~----~~~~~i~liDtPG 153 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE----TENRHYAHVDCPG 153 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe----cCCcEEEEEECCC
Confidence 4556789999999999999999998521 1124456888776544433 3456899999999
Q ss_pred ccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCC--hHHHH----HHHHHcCCC
Q 004746 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN--PERVM----QELSSIGLM 624 (732)
Q Consensus 552 hE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~--~erv~----~eL~elgl~ 624 (732)
|++|...+..++..+|++|||+|+.+++..|+.+++..+...++| +|+++||+|+.... .+.+. ..+...++.
T Consensus 154 h~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 154 HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999998999999999999999999999999999999999999 78899999996421 11122 223333332
Q ss_pred CCCCCCCCCEEEEecCCCCC------------------HHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceE
Q 004746 625 PEDWGGDIPMVQISALKGEK------------------VDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVA 686 (732)
Q Consensus 625 ~e~~gg~ipiVeVSAKtGeG------------------IdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~Va 686 (732)
. .+++++++||.+|.+ +..|++.|...... .....+.++...|.+++..+++|+|+
T Consensus 234 ~----~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~--p~r~~~~p~r~~I~~vf~v~g~GtVv 307 (478)
T PLN03126 234 G----DDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPI--PQRQTDLPFLLAVEDVFSITGRGTVA 307 (478)
T ss_pred c----CcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCC--CCCccccceeeEEEEEEEeCCceEEE
Confidence 1 358999999999853 33455554432111 11234567888999999999999999
Q ss_pred EEEEEeeEEecCCEEEEcC----eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 687 TFILQNGTLKKGDVVVCGE----AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 687 tglV~~GtLk~GD~Iv~G~----~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+|+|.+|.|++||.|.+++ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 308 ~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~-~~~v~~A~aG~~v~l 356 (478)
T PLN03126 308 TGRVERGTVKVGETVDIVGLRETRSTTVTGVEMF-QKILDEALAGDNVGL 356 (478)
T ss_pred EEEEEcCeEecCCEEEEecCCCceEEEEEEEEEC-CeECCEEeCCceeee
Confidence 9999999999999999965 35799999988 589999999999875
No 26
>PRK10218 GTP-binding protein; Provisional
Probab=99.95 E-value=2.1e-26 Score=264.84 Aligned_cols=238 Identities=26% Similarity=0.323 Sum_probs=186.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCC--ccc--------------cccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK--VAA--------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k--~~v--------------se~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
.+..+|+|+||++||||||+++|+... +.. ....|+|..... ..+..+++.++|||||||
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~----~~i~~~~~~inliDTPG~ 78 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKN----TAIKWNDYRINIVDTPGH 78 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEE----EEEecCCEEEEEEECCCc
Confidence 456799999999999999999998622 111 123455544322 233456689999999999
Q ss_pred cccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcC--CCCCCCCC
Q 004746 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIG--LMPEDWGG 630 (732)
Q Consensus 553 E~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elg--l~~e~~gg 630 (732)
.+|..++..+++.+|++|||||+.++...++..++..+...++|+|+++||+|+..++.+.+..++..+- +.......
T Consensus 79 ~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 79 ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 9999999999999999999999999999999999999988999999999999998877766666554431 11111224
Q ss_pred CCCEEEEecCCCC----------CHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCE
Q 004746 631 DIPMVQISALKGE----------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDV 700 (732)
Q Consensus 631 ~ipiVeVSAKtGe----------GIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~ 700 (732)
+++++++||++|. |+..|++.|+.... ....+++.++...|+.+.++++.|.+++++|.+|+|+.||.
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP--~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~ 236 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP--APDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQ 236 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC--CCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCE
Confidence 5899999999998 58889988876443 22335678899999999999999999999999999999999
Q ss_pred EEEcCe-----eEEEEEEEcC---CCCccceecCCCCeeC
Q 004746 701 VVCGEA-----FGKVRALFDD---SGNRVDEAGPSIPVQV 732 (732)
Q Consensus 701 Iv~G~~-----~gkVrsI~~~---~g~~V~~A~pG~~V~I 732 (732)
|.+... ..+|..|+.. ....+++|.||+.|.|
T Consensus 237 v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai 276 (607)
T PRK10218 237 VTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI 276 (607)
T ss_pred EEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEE
Confidence 988432 3567777544 3457999999998864
No 27
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.95 E-value=3.3e-26 Score=263.44 Aligned_cols=233 Identities=28% Similarity=0.346 Sum_probs=184.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc---------------ccccCCceeeeeeEEEEee-cCCcceeEEEEeCCCcc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA---------------AAEAGGITQGIGAYKVQVP-VDGKLQPCVFLDTPGHE 553 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~---------------vse~~GtTrdI~~y~v~i~-idgk~i~ItLIDTPGhE 553 (732)
+..+|+|+||.+||||||+++|+...-. .....|+|.......+.+. .++..+.++|||||||.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 4569999999999999999999853111 1224567765544444332 25667899999999999
Q ss_pred ccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCCCCCCCCCC
Q 004746 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDI 632 (732)
Q Consensus 554 ~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~~e~~gg~i 632 (732)
+|...+.+++..+|++|||||+++++..++.+.+..+...++|+|+|+||+|+...+.+....++... ++. ..
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~------~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID------AS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC------cc
Confidence 99999999999999999999999999999998888887789999999999999776665555555442 221 12
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEE
Q 004746 633 PMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKV 710 (732)
Q Consensus 633 piVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkV 710 (732)
.++++||++|.||++|+++|.... +....+++.++.+.|+++.+++++|.++.++|.+|+|+.||.|.+.+ ...+|
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~l--p~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V 237 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERI--PPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEV 237 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhC--ccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEE
Confidence 489999999999999999998654 33334667889999999999999999999999999999999998843 34577
Q ss_pred EEEEcC--CCCccceecCCCCe
Q 004746 711 RALFDD--SGNRVDEAGPSIPV 730 (732)
Q Consensus 711 rsI~~~--~g~~V~~A~pG~~V 730 (732)
..|... +...+++|.||+.+
T Consensus 238 ~~i~~~~~~~~~v~~~~aGdIg 259 (600)
T PRK05433 238 DEVGVFTPKMVPVDELSAGEVG 259 (600)
T ss_pred EEeeccCCCceECcEEcCCCEE
Confidence 777644 24578999999953
No 28
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.94 E-value=3.6e-26 Score=252.54 Aligned_cols=238 Identities=29% Similarity=0.388 Sum_probs=177.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC---CccccccCCceeeeeeEEEEee----------------cC--C----cceeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT---KVAAAEAGGITQGIGAYKVQVP----------------VD--G----KLQPC 544 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~---k~~vse~~GtTrdI~~y~v~i~----------------id--g----k~i~I 544 (732)
..++|+++||.+||||||+.+|.+. ........|+|.++++....+. .+ + ..+.+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 3478999999999999999999753 1223446788888765332221 00 0 13579
Q ss_pred EEEeCCCccccchhhcccccccCeEEEEEEecCCC-ChhhHHHHHHHHhcCC-CEEEEEeCCCCCCCChH-HHHHHHHHc
Q 004746 545 VFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-RPQTNEAIAHAKAAGV-PIVIAINKIDKDGANPE-RVMQELSSI 621 (732)
Q Consensus 545 tLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi-~~qt~EiL~~ak~~~v-PIIVViNKiDL~~a~~e-rv~~eL~el 621 (732)
+|||||||+.|......++..+|++|+|+|++++. ..++.+++..+...++ |+|+|+||+|+...... ....++..+
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~ 167 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEF 167 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHH
Confidence 99999999999888878888899999999999987 7888888888877776 59999999999653221 112222221
Q ss_pred CCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeec--------cCCCceEEEEEEee
Q 004746 622 GLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLH--------KSKGPVATFILQNG 693 (732)
Q Consensus 622 gl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~d--------kgrG~VatglV~~G 693 (732)
....+...++++++||++|+|+++|+++|..... ......+.++...|.+++.. +++|+|++|+|.+|
T Consensus 168 --l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~--~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G 243 (411)
T PRK04000 168 --VKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP--TPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQG 243 (411)
T ss_pred --hccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC--CCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeC
Confidence 1011123478999999999999999999986432 22233466778888887743 34678999999999
Q ss_pred EEecCCEEEEcCe--------------eEEEEEEEcCCCCccceecCCCCeeC
Q 004746 694 TLKKGDVVVCGEA--------------FGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 694 tLk~GD~Iv~G~~--------------~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+|++||.|.+++. ..+|++|+.+ ++.+++|.||+.|.|
T Consensus 244 ~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~-~~~~~~a~~G~~v~i 295 (411)
T PRK04000 244 VLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAG-GEKVEEARPGGLVGV 295 (411)
T ss_pred EEecCCEEEEcCCcceecccccccccceEEEeEEEEC-CEECCEEcCCCEEEE
Confidence 9999999999763 3689999988 689999999999864
No 29
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.3e-26 Score=254.53 Aligned_cols=231 Identities=27% Similarity=0.366 Sum_probs=194.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCC---------------ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK---------------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k---------------~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE 553 (732)
.+..+++||-|.+||||||.++|+... ..+....|||+.....++.+.. +..+.+++||||||-
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~-~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD-GQSYLLNLIDTPGHV 136 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc-CCceEEEeecCCCcc
Confidence 455789999999999999999997321 1235678999887777766654 788999999999999
Q ss_pred ccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCCCCCCCCCC
Q 004746 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDI 632 (732)
Q Consensus 554 ~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~~e~~gg~i 632 (732)
+|..+..+.+..||++|||+|+++|++.|+...+..+...+.-+|.|+||+|++.++++++..++.+. ++. ..
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~------~~ 210 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIP------PA 210 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC------cc
Confidence 99999999999999999999999999999999999999999999999999999999999999988764 222 23
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEc---C-eeE
Q 004746 633 PMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCG---E-AFG 708 (732)
Q Consensus 633 piVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G---~-~~g 708 (732)
+++.+|||+|.|+++++++|++ .++..+...+.++...++++++|..+|.++.++|..|.+++||.|.+. . ...
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~--rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev 288 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIR--RVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEV 288 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHh--hCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEe
Confidence 7999999999999999999997 456677788999999999999999999999999999999999999882 2 234
Q ss_pred EEEEEEcCCCCccceecCCC
Q 004746 709 KVRALFDDSGNRVDEAGPSI 728 (732)
Q Consensus 709 kVrsI~~~~g~~V~~A~pG~ 728 (732)
++-.+..-+...+.+..+|+
T Consensus 289 ~~vgvm~p~~~~~~~l~agq 308 (650)
T KOG0462|consen 289 KVVGVMRPEMTPVVELDAGQ 308 (650)
T ss_pred EEeEEeccCceeeeeecccc
Confidence 55555544455555555554
No 30
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3.3e-26 Score=248.19 Aligned_cols=231 Identities=27% Similarity=0.400 Sum_probs=187.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-------------------------------ccccCCceeeeeeEEEEeecC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-------------------------------AAEAGGITQGIGAYKVQVPVD 538 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-------------------------------vse~~GtTrdI~~y~v~i~id 538 (732)
...+++|+||++||||||+.+|+..--. ...+.|.|.++....++.
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet--- 82 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET--- 82 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec---
Confidence 4468999999999999999998632111 123668888876666553
Q ss_pred CcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCC-------CChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCC
Q 004746 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-------IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN 610 (732)
Q Consensus 539 gk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdg-------i~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~ 610 (732)
..+.++|+|+|||.+|...+..++.+||++|||+|+.++ ...|++|++-.++..++. +||++||||+..++
T Consensus 83 -~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wd 161 (428)
T COG5256 83 -DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred -CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccC
Confidence 446899999999999999999999999999999999987 899999999999999987 99999999999887
Q ss_pred hHHHHHHHHH-------cCCCCCCCCCCCCEEEEecCCCCCHHH------------HHHHHHHHHhhhhhccCCCCCccc
Q 004746 611 PERVMQELSS-------IGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRNAKG 671 (732)
Q Consensus 611 ~erv~~eL~e-------lgl~~e~~gg~ipiVeVSAKtGeGIde------------Lfe~Ii~lael~~lk~~p~r~a~g 671 (732)
.+++.+...+ .++.. .+++|++|||..|.|+.+ |+++|.. +.......+.|+..
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~----~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd~---~~~p~~~~d~Plr~ 234 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNP----KDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALDQ---LEPPERPLDKPLRL 234 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc----cCCeEEecccccCCcccccCcCCcCccCChHHHHHhc---cCCCCCCCCCCeEe
Confidence 7665543322 33332 247899999999999865 5555541 22222335678888
Q ss_pred eEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 672 TVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 672 ~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
.|.+++...+.|+|..|+|.+|.|++||.|++.+ ..+.|++++.+ .+.+..|.||+.|.+
T Consensus 235 pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~-~~~~~~a~~GD~i~~ 296 (428)
T COG5256 235 PIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH-HEEISQAEPGDNVGF 296 (428)
T ss_pred EeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeec-ccccccCCCCCeEEE
Confidence 9999888889999999999999999999999954 57899999999 689999999999863
No 31
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.94 E-value=6.4e-26 Score=250.01 Aligned_cols=227 Identities=25% Similarity=0.319 Sum_probs=165.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcc---------------------------------ccccCCceeeeeeEEEEeecC
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVA---------------------------------AAEAGGITQGIGAYKVQVPVD 538 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~---------------------------------vse~~GtTrdI~~y~v~i~id 538 (732)
.+|+|+||+|+|||||+++|+...-. .....|+|++..+..+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~---- 76 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS---- 76 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc----
Confidence 47999999999999999999732110 12245677776544433
Q ss_pred CcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCChHHH---
Q 004746 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPERV--- 614 (732)
Q Consensus 539 gk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~~erv--- 614 (732)
.++..++|||||||++|...+..++..+|++|||+|+.+++.+|+.+++..+...+++ +|+++||+|+...+.+.+
T Consensus 77 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 77 TDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred cCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHH
Confidence 3456899999999999988888889999999999999999999999999988887776 889999999975443322
Q ss_pred HHHHH----HcCCCCCCCCCCCCEEEEecCCCCCHHH------------HHHHHHHHHhhhhhccCCCCCccceEEEEee
Q 004746 615 MQELS----SIGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRNAKGTVIEAGL 678 (732)
Q Consensus 615 ~~eL~----elgl~~e~~gg~ipiVeVSAKtGeGIde------------Lfe~Ii~lael~~lk~~p~r~a~g~Vies~~ 678 (732)
...+. ..++ .+++++++||++|+|+++ |++.|..+ .......+.++...|..++.
T Consensus 157 ~~~~~~~~~~~~~------~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~---~~~~~~~~~p~r~~i~~v~~ 227 (406)
T TIGR02034 157 KKDYLAFAEQLGF------RDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETV---EVERDAQDLPLRFPVQYVNR 227 (406)
T ss_pred HHHHHHHHHHcCC------CCccEEEeecccCCCCcccccCCCccchhHHHHHHHhc---CCCCCcCCCCcccceEEEee
Confidence 22221 2222 246899999999999986 34444322 11111233455555554432
Q ss_pred ccCCCceEEEEEEeeEEecCCEEEEc--CeeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 679 HKSKGPVATFILQNGTLKKGDVVVCG--EAFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 679 dkgrG~VatglV~~GtLk~GD~Iv~G--~~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
....+.-+.|+|.+|+|++||.|.+. ....+|++|+.+ +..+++|.||++|.|
T Consensus 228 ~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~-~~~~~~a~~G~~v~l 282 (406)
T TIGR02034 228 PNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTF-DGDLEQARAGQAVTL 282 (406)
T ss_pred cCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEEC-CcccCEeCCCCEEEE
Confidence 22222236799999999999999994 467899999988 578999999999874
No 32
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=2.4e-25 Score=243.35 Aligned_cols=207 Identities=31% Similarity=0.431 Sum_probs=182.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc---------------cccccCCceeeeeeEEEEeec-CCcceeEEEEeCCCc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV---------------AAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGH 552 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~---------------~vse~~GtTrdI~~y~v~i~i-dgk~i~ItLIDTPGh 552 (732)
.+..+..|+-|.+||||||.++|+.... .....+|||+......+.+.. +|..+.++|||||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 4456899999999999999999974221 234678999888777777664 568899999999999
Q ss_pred cccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHH-cCCCCCCCCCC
Q 004746 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS-IGLMPEDWGGD 631 (732)
Q Consensus 553 E~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~e-lgl~~e~~gg~ 631 (732)
-+|....++.+..|.++|||+|++.|+..|+......+-..+.-+|-|+||+||+.++++++.+++++ +|+..
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~------ 160 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA------ 160 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc------
Confidence 99999999999999999999999999999999988888888999999999999999999999999887 45443
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEE
Q 004746 632 IPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVC 703 (732)
Q Consensus 632 ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~ 703 (732)
...+.||||+|.||++++++|+.. ++..+..++.+..+.++++++|..+|.|+.++|..|+|++||.|.+
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~~--iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~ 230 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVEK--IPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRM 230 (603)
T ss_pred chheeEecccCCCHHHHHHHHHhh--CCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEE
Confidence 358999999999999999999874 4566688999999999999999999999999999999999999988
No 33
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.7e-25 Score=242.55 Aligned_cols=227 Identities=26% Similarity=0.365 Sum_probs=191.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCC---ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTK---VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k---~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
.|+.+||.+||||||+..+.+.. .......|+|+|+++|.... ....+.|+|+|||++|...+..++...|.+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~----~d~~~~fIDvpgh~~~i~~miag~~~~d~a 77 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL----EDGVMGFIDVPGHPDFISNLLAGLGGIDYA 77 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC----CCCceEEeeCCCcHHHHHHHHhhhcCCceE
Confidence 58899999999999999998643 33556789999999988664 334899999999999999999999999999
Q ss_pred EEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCC-ChHHHHHHHH-HcCCCCCCCCCCCCEEEEecCCCCCHH
Q 004746 570 VIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGA-NPERVMQELS-SIGLMPEDWGGDIPMVQISALKGEKVD 646 (732)
Q Consensus 570 ILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a-~~erv~~eL~-elgl~~e~~gg~ipiVeVSAKtGeGId 646 (732)
+||||++++++.|+.|++..+...+++ .|+|+||+|..+. ..+....++. ... ..+.++|.+|+++|+||+
T Consensus 78 lLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~------l~~~~i~~~s~~~g~GI~ 151 (447)
T COG3276 78 LLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS------LANAKIFKTSAKTGRGIE 151 (447)
T ss_pred EEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc------cccccccccccccCCCHH
Confidence 999999999999999999999999998 6999999998642 1222222222 222 135788999999999999
Q ss_pred HHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCcccee
Q 004746 647 DLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEA 724 (732)
Q Consensus 647 eLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A 724 (732)
+|.+.|..+.+ ....+.+.++.-.|..++..+|.|+|++|.+.+|++++||.+++.+ ...+||+|+.+ ++++++|
T Consensus 152 ~Lk~~l~~L~~--~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~-d~d~~~a 228 (447)
T COG3276 152 ELKNELIDLLE--EIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAH-DVDVEEA 228 (447)
T ss_pred HHHHHHHHhhh--hhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeeeec-Ccchhhc
Confidence 99999998776 3445667788888889999999999999999999999999999964 56899999999 5999999
Q ss_pred cCCCCeeC
Q 004746 725 GPSIPVQV 732 (732)
Q Consensus 725 ~pG~~V~I 732 (732)
.+|++|.+
T Consensus 229 ~AG~RVgL 236 (447)
T COG3276 229 KAGQRVGL 236 (447)
T ss_pred cccceeee
Confidence 99999864
No 34
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.93 E-value=6.4e-25 Score=239.47 Aligned_cols=235 Identities=29% Similarity=0.370 Sum_probs=195.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccc----------------cccCCceeeeeeEEEEeecCCcceeEEEEeCCCcc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAA----------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~v----------------se~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE 553 (732)
.-.+|+||-|++||||||++.|+++.-.. ....|||+- .....+.++++.|+|+|||||.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITIL----aKnTav~~~~~~INIvDTPGHA 79 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITIL----AKNTAVNYNGTRINIVDTPGHA 79 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEE----eccceeecCCeEEEEecCCCcC
Confidence 44689999999999999999998543221 234566643 3333445667899999999999
Q ss_pred ccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHH----cCCCCCCCC
Q 004746 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS----IGLMPEDWG 629 (732)
Q Consensus 554 ~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~e----lgl~~e~~g 629 (732)
+|+....+.+...|.++|++|+.+|.++|++-.+..+...+.+.|||+||+|.+++.++++..+... ++... ..
T Consensus 80 DFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~d--eQ 157 (603)
T COG1217 80 DFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATD--EQ 157 (603)
T ss_pred CccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCh--hh
Confidence 9999999999999999999999999999999999999999999999999999999998887766443 33333 33
Q ss_pred CCCCEEEEecCCCC----------CHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCC
Q 004746 630 GDIPMVQISALKGE----------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGD 699 (732)
Q Consensus 630 g~ipiVeVSAKtGe----------GIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD 699 (732)
.++|++..||+.|. ++.-||+.|+... +....+++.|++..|....++...|.+..|+|.+|++++|+
T Consensus 158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv--p~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q 235 (603)
T COG1217 158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV--PAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQ 235 (603)
T ss_pred CCCcEEEeeccCceeccCccccccchhHHHHHHHHhC--CCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCC
Confidence 57899999999984 6888999998743 44557889999999999999999999999999999999999
Q ss_pred EEEE----c-CeeEEEEEEEcCCCC---ccceecCCCCeeC
Q 004746 700 VVVC----G-EAFGKVRALFDDSGN---RVDEAGPSIPVQV 732 (732)
Q Consensus 700 ~Iv~----G-~~~gkVrsI~~~~g~---~V~~A~pG~~V~I 732 (732)
.+.+ | ...+||..++.+.|- .+++|.+|+.|.|
T Consensus 236 ~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVai 276 (603)
T COG1217 236 QVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAI 276 (603)
T ss_pred eEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEE
Confidence 9888 2 357899999988775 4899999999875
No 35
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.93 E-value=5.7e-25 Score=247.06 Aligned_cols=238 Identities=23% Similarity=0.245 Sum_probs=166.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc---------------------------------ccccCCceeeeeeEEEEe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA---------------------------------AAEAGGITQGIGAYKVQV 535 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~---------------------------------vse~~GtTrdI~~y~v~i 535 (732)
+..++|+|+||+|+|||||+++|+...-. .....|+|+++.+..+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~-- 102 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF-- 102 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe--
Confidence 45689999999999999999999743211 0123466777654443
Q ss_pred ecCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCC-CEEEEEeCCCCCCCChHH-
Q 004746 536 PVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGV-PIVIAINKIDKDGANPER- 613 (732)
Q Consensus 536 ~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~v-PIIVViNKiDL~~a~~er- 613 (732)
..+...++|||||||++|...+..++..+|++|||+|+.+++..++.+++..+...++ ++||++||+|+...+.+.
T Consensus 103 --~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 103 --STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred --ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHH
Confidence 3345689999999999998888888899999999999999999999998888887775 589999999997544322
Q ss_pred --HHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHH--------HHHHHhhh-hhccCCCCCccceEEEEeeccCC
Q 004746 614 --VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLET--------IMLVAELQ-ELKANPHRNAKGTVIEAGLHKSK 682 (732)
Q Consensus 614 --v~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~--------Ii~lael~-~lk~~p~r~a~g~Vies~~dkgr 682 (732)
+..++..+... ..+...++++++||++|+||+++.+. |+...+.. ......+.++...|..++.....
T Consensus 181 ~~i~~~l~~~~~~-~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~ 259 (474)
T PRK05124 181 ERIREDYLTFAEQ-LPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLD 259 (474)
T ss_pred HHHHHHHHHHHHh-cCCCCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCc
Confidence 22222221000 00112478999999999999875321 22222211 11122345566555554322121
Q ss_pred CceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 683 GPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 683 G~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
...+.|+|.+|+|++||.|++++ ...+|++|+.+ +..++.|.||+.|.|
T Consensus 260 ~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~-~~~v~~A~aG~~V~l 310 (474)
T PRK05124 260 FRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTF-DGDLEEAFAGEAITL 310 (474)
T ss_pred ccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEc-CccccCcCCCCEEEE
Confidence 12257999999999999999965 46899999988 478999999999875
No 36
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.92 E-value=2.2e-24 Score=249.72 Aligned_cols=229 Identities=26% Similarity=0.328 Sum_probs=163.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-c--------------------------------cccCCceeeeeeEEEEee
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-A--------------------------------AEAGGITQGIGAYKVQVP 536 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-v--------------------------------se~~GtTrdI~~y~v~i~ 536 (732)
..++|+|+||+|+|||||+++|+..... . ....|+|++..+..+.
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~-- 100 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA-- 100 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc--
Confidence 3468999999999999999999853211 1 1124556655443332
Q ss_pred cCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCC-CEEEEEeCCCCCCCChHH--
Q 004746 537 VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGV-PIVIAINKIDKDGANPER-- 613 (732)
Q Consensus 537 idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~v-PIIVViNKiDL~~a~~er-- 613 (732)
..+..++|+|||||++|...+..++..+|++|||+|+++++..++.+++..+...++ ++|||+||+|+...+.++
T Consensus 101 --~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 101 --TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred --cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHH
Confidence 345679999999999998888888999999999999999999999999988887775 588999999996533332
Q ss_pred -HHHHHH----HcCCCCCCCCCCCCEEEEecCCCCCHHH------------HHHHHHHHHhhhhhccCCCCCccceEEEE
Q 004746 614 -VMQELS----SIGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRNAKGTVIEA 676 (732)
Q Consensus 614 -v~~eL~----elgl~~e~~gg~ipiVeVSAKtGeGIde------------Lfe~Ii~lael~~lk~~p~r~a~g~Vies 676 (732)
+..++. ..++ .+++++++||++|.|+++ |++.|..+ .......+.++...|..+
T Consensus 179 ~i~~~i~~~~~~~~~------~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~---~~~~~~~~~p~r~~i~~v 249 (632)
T PRK05506 179 EIVADYRAFAAKLGL------HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETV---EIASDRNLKDFRFPVQYV 249 (632)
T ss_pred HHHHHHHHHHHHcCC------CCccEEEEecccCCCccccccCCCcccHhHHHHHHhcC---CCCCCcCCCCceeeEEEE
Confidence 222222 2232 246899999999999984 44443322 111111334555555444
Q ss_pred eeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 677 GLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 677 ~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+.....+..+.|+|.+|+|++||.|++++ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 250 ~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i 306 (632)
T PRK05506 250 NRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTP-DGDLDEAFAGQAVTL 306 (632)
T ss_pred EecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEEC-CceeCEEcCCCeEEE
Confidence 32211112257999999999999999954 57899999998 578999999999875
No 37
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.92 E-value=1.6e-25 Score=246.30 Aligned_cols=226 Identities=19% Similarity=0.249 Sum_probs=173.2
Q ss_pred cchHHHHHHHhcCCHHHHHHHHHhCCCcccccccCCHHHHHHhhhhcCCeeeecCchhhHHHhhhccccChhhhhcccCC
Q 004746 411 GMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLEDR 490 (732)
Q Consensus 411 ~iav~qLag~Ls~~i~eiik~L~~lG~~~~in~~Ld~e~ie~ia~e~~~~~i~~~~~~ieell~~~~~~~e~~~~~l~~r 490 (732)
.+++++|.|.|+..+.++++.|+++-++++.+.++++|+++....+.....+......+ +.++...+.+.+.+.
T Consensus 143 r~A~~~l~G~ls~~i~~lr~~li~~~a~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l------~~ll~~~~~g~ilr~ 216 (454)
T COG0486 143 RIALRQLQGALSQLINELREALLELLAQVEANIDFPEEDIEELVLEKIREKLEELIAEL------DELLATAKQGKILRE 216 (454)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHheEeCCCCcccccchhHHHHHHHHHHHHHHH------HHHHHhhhhhhhhhc
Confidence 58999999999999999999999997778888888777554433322221111111222 334467888999999
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCC-ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc-------cccchhhccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-------EAFGAMRARG 562 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k-~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh-------E~f~~~r~r~ 562 (732)
+.+|+|+|.||+|||||+|+|++.+ .++++++|||||+ ++..++-+++++.++||+|. |+.+..++..
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDv----iee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDV----IEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccce----EEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 9999999999999999999999665 5699999999997 55555667789999999993 5566666654
Q ss_pred c-cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 563 A-RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 563 ~-~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
. ..||++|+|+|++..+..++...+. +...+.|+++|+||+|+......... .+....+++.+||++
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----------~~~~~~~~i~iSa~t 360 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE-----------KLANGDAIISISAKT 360 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh-----------hccCCCceEEEEecC
Confidence 4 8999999999999987777777777 44457899999999999654321111 112245799999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 004746 642 GEKVDDLLETIMLVAEL 658 (732)
Q Consensus 642 GeGIdeLfe~Ii~lael 658 (732)
|+|++.|.++|......
T Consensus 361 ~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 361 GEGLDALREAIKQLFGK 377 (454)
T ss_pred ccCHHHHHHHHHHHHhh
Confidence 99999999999876543
No 38
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=9.1e-25 Score=246.69 Aligned_cols=226 Identities=37% Similarity=0.568 Sum_probs=180.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeec----------C----CcceeEEEEeCCCccc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV----------D----GKLQPCVFLDTPGHEA 554 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~i----------d----gk~i~ItLIDTPGhE~ 554 (732)
-|.|.+|||||++.|||-|++.|++.++..++++|+|+.|++..+.... + .+---+.+||||||+.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 3678999999999999999999999999999999999999876554320 0 1112488999999999
Q ss_pred cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC-C------Ch----------------
Q 004746 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG-A------NP---------------- 611 (732)
Q Consensus 555 f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~-a------~~---------------- 611 (732)
|..++.++...||++|||+|+.+|+.+|++|.++.++..+.||||++||+|... + ..
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~ 632 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFK 632 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999632 1 10
Q ss_pred ---HHHHHHHHHcCCCC------CCCCCCCCEEEEecCCCCCHHHHHHHHHHHHhhh-hhccCCCCCccceEEEEeeccC
Q 004746 612 ---ERVMQELSSIGLMP------EDWGGDIPMVQISALKGEKVDDLLETIMLVAELQ-ELKANPHRNAKGTVIEAGLHKS 681 (732)
Q Consensus 612 ---erv~~eL~elgl~~------e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~-~lk~~p~r~a~g~Vies~~dkg 681 (732)
..+..++.+.|+.. .+.+..+.++++||.+|+||-+|+-+|+.+..-. .-+-..-....++|+++....|
T Consensus 633 ~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG 712 (1064)
T KOG1144|consen 633 ERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEG 712 (1064)
T ss_pred HHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecC
Confidence 11223344444433 2344567899999999999999999999776532 2122244567899999999999
Q ss_pred CCceEEEEEEeeEEecCCEEEE----cCeeEEEEEEE
Q 004746 682 KGPVATFILQNGTLKKGDVVVC----GEAFGKVRALF 714 (732)
Q Consensus 682 rG~VatglV~~GtLk~GD~Iv~----G~~~gkVrsI~ 714 (732)
.|+.+.+.+.+|.|+.||.|++ |+....||+|.
T Consensus 713 ~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLL 749 (1064)
T KOG1144|consen 713 HGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALL 749 (1064)
T ss_pred CCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhc
Confidence 9999999999999999999887 34444445443
No 39
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=9.8e-24 Score=199.56 Aligned_cols=164 Identities=66% Similarity=0.994 Sum_probs=134.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
|.|+|+|++|+|||||+++|....+...+.+++|+++..+.+.... +..+.++||||||++.|..++..++..+|++++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~ 79 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-LKIPGITFIDTPGHEAFTNMRARGASLTDIAIL 79 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-CCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEE
Confidence 5799999999999999999998887777777889888766665421 245689999999999999888888999999999
Q ss_pred EEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCC-CCCCCCCCEEEEecCCCCCHHHHHH
Q 004746 572 VVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMP-EDWGGDIPMVQISALKGEKVDDLLE 650 (732)
Q Consensus 572 VVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~-e~~gg~ipiVeVSAKtGeGIdeLfe 650 (732)
|+|++++...++.+.+..+...++|+++|+||+|+.....+.+...+..+.... +.|+..++++++||++|+|+++|++
T Consensus 80 v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (168)
T cd01887 80 VVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLE 159 (168)
T ss_pred EEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHH
Confidence 999999888888888888888899999999999997655555555554433222 2344567899999999999999999
Q ss_pred HHHHHH
Q 004746 651 TIMLVA 656 (732)
Q Consensus 651 ~Ii~la 656 (732)
+|....
T Consensus 160 ~l~~~~ 165 (168)
T cd01887 160 AILLLA 165 (168)
T ss_pred HHHHhh
Confidence 998654
No 40
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.90 E-value=1.1e-22 Score=231.30 Aligned_cols=240 Identities=25% Similarity=0.331 Sum_probs=176.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCC-cc--c-------------------cccCCceeeeeeEEEEeecCCcceeEEE
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK-VA--A-------------------AEAGGITQGIGAYKVQVPVDGKLQPCVF 546 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k-~~--v-------------------se~~GtTrdI~~y~v~i~idgk~i~ItL 546 (732)
.+..+|+|+||+|+|||||+++|+... .. . ....|+|..... .. +..+++.++|
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~--~~--~~~~~~~inl 83 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSV--MQ--FPYRDCLINL 83 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeee--EE--EEECCEEEEE
Confidence 356799999999999999999997311 10 0 011233322222 22 3345678999
Q ss_pred EeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHH-cCCC-
Q 004746 547 LDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS-IGLM- 624 (732)
Q Consensus 547 IDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~e-lgl~- 624 (732)
||||||++|.....+++..+|++|+|+|+++++..++..++..+...++|+|+++||+|+..++..++..++.. ++..
T Consensus 84 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~ 163 (526)
T PRK00741 84 LDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIAC 163 (526)
T ss_pred EECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCC
Confidence 99999999998888889999999999999999999999999999889999999999999987776555544432 1100
Q ss_pred --------------------------C-C----------------------CC---------------------------
Q 004746 625 --------------------------P-E----------------------DW--------------------------- 628 (732)
Q Consensus 625 --------------------------~-e----------------------~~--------------------------- 628 (732)
. . .+
T Consensus 164 ~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~ 243 (526)
T PRK00741 164 APITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAF 243 (526)
T ss_pred eeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHH
Confidence 0 0 00
Q ss_pred --CCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhcc-------CCCCCccceEEEEe---eccCCCceEEEEEEeeEEe
Q 004746 629 --GGDIPMVQISALKGEKVDDLLETIMLVAELQELKA-------NPHRNAKGTVIEAG---LHKSKGPVATFILQNGTLK 696 (732)
Q Consensus 629 --gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~-------~p~r~a~g~Vies~---~dkgrG~VatglV~~GtLk 696 (732)
+.-+|++..||+++.||..|++.|......+.... ....++.++|+.+. .++.+|.++.++|.+|+|+
T Consensus 244 ~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV~sG~l~ 323 (526)
T PRK00741 244 LAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRVCSGKFE 323 (526)
T ss_pred hcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEEeccEEC
Confidence 01167999999999999999999998765432111 11235788999987 3568999999999999999
Q ss_pred cCCEEEEcC--e---eEEEEEEEcCCCCccceecCCCCeeC
Q 004746 697 KGDVVVCGE--A---FGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 697 ~GD~Iv~G~--~---~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
.|+.|.... . .+++..++...-..+++|.||+.+.|
T Consensus 324 ~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v 364 (526)
T PRK00741 324 KGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGL 364 (526)
T ss_pred CCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEE
Confidence 999997632 2 23445566555667999999998754
No 41
>PRK12739 elongation factor G; Reviewed
Probab=99.90 E-value=1.7e-22 Score=236.34 Aligned_cols=240 Identities=25% Similarity=0.309 Sum_probs=184.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc------------------ccccCCceeeeeeEEEEeecCCcceeEEEEeCC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTP 550 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~------------------vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTP 550 (732)
.+..+|+|+||+|+|||||+++|+..... ....+|+|++.....+.+ +++.++|||||
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~----~~~~i~liDTP 81 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW----KGHRINIIDTP 81 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE----CCEEEEEEcCC
Confidence 35678999999999999999999742110 113567888775555443 45789999999
Q ss_pred CccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHH-cCCCC----
Q 004746 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS-IGLMP---- 625 (732)
Q Consensus 551 GhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~e-lgl~~---- 625 (732)
||.+|...+.+++..+|++|+|+|+.+++..++..++.++...++|+|+++||+|+...+..+...++.. +++..
T Consensus 82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 161 (691)
T PRK12739 82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQ 161 (691)
T ss_pred CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEE
Confidence 9999999988999999999999999999999999999999999999999999999987665555544433 11100
Q ss_pred --------------------CCCC--------------------------------------------------------
Q 004746 626 --------------------EDWG-------------------------------------------------------- 629 (732)
Q Consensus 626 --------------------e~~g-------------------------------------------------------- 629 (732)
..|+
T Consensus 162 iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~ 241 (691)
T PRK12739 162 LPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKA 241 (691)
T ss_pred ecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHH
Confidence 0011
Q ss_pred ---------CCCCEEEEecCCCCCHHHHHHHHHHHHhhhh-----------------hccCCCCCccceEEEEeeccCCC
Q 004746 630 ---------GDIPMVQISALKGEKVDDLLETIMLVAELQE-----------------LKANPHRNAKGTVIEAGLHKSKG 683 (732)
Q Consensus 630 ---------g~ipiVeVSAKtGeGIdeLfe~Ii~lael~~-----------------lk~~p~r~a~g~Vies~~dkgrG 683 (732)
.-+|++..||.++.|++.|++.|......+. ...+++.++.+.|+....++.+|
T Consensus 242 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G 321 (691)
T PRK12739 242 AIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVG 321 (691)
T ss_pred HHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCC
Confidence 1136788899999999999999987654321 11245667889999999999999
Q ss_pred ceEEEEEEeeEEecCCEEEEcC-----eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 684 PVATFILQNGTLKKGDVVVCGE-----AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 684 ~VatglV~~GtLk~GD~Iv~G~-----~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
.++.++|.+|+|+.||.|.... ..+++..|....-..+++|.+|+.+.|
T Consensus 322 ~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i 375 (691)
T PRK12739 322 RLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAA 375 (691)
T ss_pred eEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEE
Confidence 9999999999999999997632 123555566555567999999998754
No 42
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.90 E-value=3e-22 Score=234.17 Aligned_cols=240 Identities=26% Similarity=0.288 Sum_probs=182.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc------------------ccccCCceeeeeeEEEEeecCCcceeEEEEeCC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTP 550 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~------------------vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTP 550 (732)
.+..+|+|+||+|+|||||+++|+..... .....|+|++.....+.+ +++.++|||||
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~----~~~~i~liDTP 83 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW----KGHRINIIDTP 83 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE----CCeEEEEEECC
Confidence 34569999999999999999999742111 012467887765555443 45789999999
Q ss_pred CccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCCC----
Q 004746 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP---- 625 (732)
Q Consensus 551 GhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~~---- 625 (732)
||.+|...+..+++.+|++|||+|+.++...++.+++.++...++|+|+++||+|+..++..+...++... ++..
T Consensus 84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 163 (689)
T TIGR00484 84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQ 163 (689)
T ss_pred CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEE
Confidence 99999888888899999999999999999999999999998899999999999999876655555444331 1100
Q ss_pred ------------------------C--------------------------------------------------C----
Q 004746 626 ------------------------E--------------------------------------------------D---- 627 (732)
Q Consensus 626 ------------------------e--------------------------------------------------~---- 627 (732)
. .
T Consensus 164 ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~ 243 (689)
T TIGR00484 164 LPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNA 243 (689)
T ss_pred eccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHH
Confidence 0 0
Q ss_pred ------CCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhh-----------------hccCCCCCccceEEEEeeccCCCc
Q 004746 628 ------WGGDIPMVQISALKGEKVDDLLETIMLVAELQE-----------------LKANPHRNAKGTVIEAGLHKSKGP 684 (732)
Q Consensus 628 ------~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~-----------------lk~~p~r~a~g~Vies~~dkgrG~ 684 (732)
.+.-+|++..||+++.|++.|++.|.....-+. ....++.++.++|+....++..|.
T Consensus 244 l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ 323 (689)
T TIGR00484 244 IRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQ 323 (689)
T ss_pred HHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCCCe
Confidence 012246778899999999999999987654321 112345678899999999999999
Q ss_pred eEEEEEEeeEEecCCEEEEcC-----eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 685 VATFILQNGTLKKGDVVVCGE-----AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 685 VatglV~~GtLk~GD~Iv~G~-----~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
++.++|.+|+|+.||.|.... ..+++..+.......+++|.+|+.+.|
T Consensus 324 i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i 376 (689)
T TIGR00484 324 LTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAA 376 (689)
T ss_pred EEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEE
Confidence 999999999999999997632 223455555554567999999998754
No 43
>PRK13351 elongation factor G; Reviewed
Probab=99.89 E-value=3.1e-22 Score=233.83 Aligned_cols=239 Identities=28% Similarity=0.374 Sum_probs=183.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc------------------ccccCCceeeeeeEEEEeecCCcceeEEEEeCCC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~------------------vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG 551 (732)
+..+|+|+||.|||||||+++|+..... .....++|+......+. ..++.++||||||
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~----~~~~~i~liDtPG 82 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD----WDNHRINLIDTPG 82 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE----ECCEEEEEEECCC
Confidence 4579999999999999999999842110 01134556554444433 2457899999999
Q ss_pred ccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCCC-----
Q 004746 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP----- 625 (732)
Q Consensus 552 hE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~~----- 625 (732)
|.+|..++..+++.+|++|+|+|++++...++..++.++...++|+++++||+|+...+..+...++... +...
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 162 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQL 162 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEe
Confidence 9999999999999999999999999999999999999998889999999999999887766665554321 1100
Q ss_pred -------------------CCC----------------------------------------------------------
Q 004746 626 -------------------EDW---------------------------------------------------------- 628 (732)
Q Consensus 626 -------------------e~~---------------------------------------------------------- 628 (732)
..|
T Consensus 163 P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~ 242 (687)
T PRK13351 163 PIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAP 242 (687)
T ss_pred ccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHH
Confidence 001
Q ss_pred -------CCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhh----------------ccCCCCCccceEEEEeeccCCCce
Q 004746 629 -------GGDIPMVQISALKGEKVDDLLETIMLVAELQEL----------------KANPHRNAKGTVIEAGLHKSKGPV 685 (732)
Q Consensus 629 -------gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~l----------------k~~p~r~a~g~Vies~~dkgrG~V 685 (732)
+.-+|++..||++|.||+.|++.|......+.. ..+++.++.+.|+++..++++|.+
T Consensus 243 ~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i 322 (687)
T PRK13351 243 LREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKL 322 (687)
T ss_pred HHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceE
Confidence 012567888999999999999999976543321 124567888999999999999999
Q ss_pred EEEEEEeeEEecCCEEEEcC-----eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 686 ATFILQNGTLKKGDVVVCGE-----AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 686 atglV~~GtLk~GD~Iv~G~-----~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+.++|.+|+|+.||.|.+.. ..++|..+.......+++|.||+.+.|
T Consensus 323 ~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i 374 (687)
T PRK13351 323 TYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAV 374 (687)
T ss_pred EEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEE
Confidence 99999999999999998743 234566666555678999999998754
No 44
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.89 E-value=1.2e-23 Score=207.03 Aligned_cols=164 Identities=35% Similarity=0.540 Sum_probs=127.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc------------------ccccCCceeeeeeEEEEeecCCcceeEEEEeCCC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~------------------vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG 551 (732)
+.++|+|+|+.+||||||+++|+..... .....++|.++..+.+. .....+.++|+||||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~--~~~~~~~i~~iDtPG 79 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE--KNENNRKITLIDTPG 79 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE--BTESSEEEEEEEESS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc--ccccccceeeccccc
Confidence 3468999999999999999999843211 12346778777666655 134567899999999
Q ss_pred ccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCC--
Q 004746 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWG-- 629 (732)
Q Consensus 552 hE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~g-- 629 (732)
|.+|...+..++..+|++|+|+|+.+++..++.+++..+...++|+|||+||+|+......+...++...-+....+.
T Consensus 80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~ 159 (188)
T PF00009_consen 80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGE 159 (188)
T ss_dssp SHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTT
T ss_pred ccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCcc
Confidence 999999999999999999999999999999999999999999999999999999974333344433331100001111
Q ss_pred CCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 630 GDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 630 g~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
..++++++||++|.|+++|++.|...
T Consensus 160 ~~~~vi~~Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 160 EIVPVIPISALTGDGIDELLEALVEL 185 (188)
T ss_dssp STEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ccceEEEEecCCCCCHHHHHHHHHHh
Confidence 14789999999999999999999864
No 45
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.89 E-value=7.1e-23 Score=218.13 Aligned_cols=229 Identities=28% Similarity=0.370 Sum_probs=174.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccc---------------------------------cccCCceeeeeeEEEEee
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAA---------------------------------AEAGGITQGIGAYKVQVP 536 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~v---------------------------------se~~GtTrdI~~y~v~i~ 536 (732)
...+++.+|+++.||||||.+|++..-.+ ....|||+|+.+..+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF--- 81 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF--- 81 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec---
Confidence 45689999999999999999997432211 235589999843332
Q ss_pred cCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCChHHHH
Q 004746 537 VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPERVM 615 (732)
Q Consensus 537 idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~~erv~ 615 (732)
.-...+|.+.|||||++|...+..++..||++|+++|+..++..|++.+--.+...+++ +|+++|||||.+.+.+.+.
T Consensus 82 -sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 82 -STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred -ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHH
Confidence 33556899999999999999999999999999999999999999999998888888988 8999999999887765544
Q ss_pred HHHH-------HcCCCCCCCCCCCCEEEEecCCCCCHHH------------HHHHHHHHHhhhhhccCCCCCccceEEEE
Q 004746 616 QELS-------SIGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRNAKGTVIEA 676 (732)
Q Consensus 616 ~eL~-------elgl~~e~~gg~ipiVeVSAKtGeGIde------------Lfe~Ii~lael~~lk~~p~r~a~g~Vies 676 (732)
+... ++++. ...++|+||+.|+||-. |++.|....-.......+.++...+|...
T Consensus 161 ~I~~dy~~fa~~L~~~------~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp 234 (431)
T COG2895 161 AIVADYLAFAAQLGLK------DVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRP 234 (431)
T ss_pred HHHHHHHHHHHHcCCC------cceEEechhccCCcccccccCCCcccCccHHHHHhhccccccccccceeeceEEecCC
Confidence 3322 33332 35799999999999854 44444332222233344566666666655
Q ss_pred eeccCCCceEEEEEEeeEEecCCEEEE--cCeeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 677 GLHKSKGPVATFILQNGTLKKGDVVVC--GEAFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 677 ~~dkgrG~VatglV~~GtLk~GD~Iv~--G~~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
.. ..||.. |++.+|++++||.+++ .+...+|..|...+| .+++|.+|+.|.+
T Consensus 235 ~~-dfRGya--GtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg-~~~~A~aG~aVtl 288 (431)
T COG2895 235 NL-DFRGYA--GTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG-ELAQASAGEAVTL 288 (431)
T ss_pred CC-cccccc--eeeeccceecCCeEEEccCCCeeeEEEEeccCC-chhhccCCceEEE
Confidence 43 356654 5789999999999988 446779999999965 7999999999864
No 46
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.89 E-value=5.7e-22 Score=225.42 Aligned_cols=240 Identities=22% Similarity=0.279 Sum_probs=176.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc-CCcc--cc-------------------ccCCceeeeeeEEEEeecCCcceeEEE
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK-TKVA--AA-------------------EAGGITQGIGAYKVQVPVDGKLQPCVF 546 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~-~k~~--vs-------------------e~~GtTrdI~~y~v~i~idgk~i~ItL 546 (732)
.+..+|+|+||+|+|||||+++|+. .... .+ ...|+|... ....++.+++.++|
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~----~~~~~~~~~~~inl 84 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITT----SVMQFPYRDCLVNL 84 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEE----EEEEEeeCCeEEEE
Confidence 4567999999999999999999863 2111 00 112333222 22223456689999
Q ss_pred EeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCC-
Q 004746 547 LDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLM- 624 (732)
Q Consensus 547 IDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~- 624 (732)
||||||.+|.....+++..+|++|+|+|+.+++..++..+++.++..++|+|+++||+|+...+.+++...+... +..
T Consensus 85 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~ 164 (527)
T TIGR00503 85 LDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINC 164 (527)
T ss_pred EECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCC
Confidence 999999999888888889999999999999999999999998888889999999999999776666655544431 100
Q ss_pred --------------------------C-CC--------------------------------------------------
Q 004746 625 --------------------------P-ED-------------------------------------------------- 627 (732)
Q Consensus 625 --------------------------~-e~-------------------------------------------------- 627 (732)
+ ..
T Consensus 165 ~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ 244 (527)
T TIGR00503 165 APITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAF 244 (527)
T ss_pred ccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHH
Confidence 0 00
Q ss_pred -CCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhcc-------CCCCCccceEEEEee--c-cCCCceEEEEEEeeEEe
Q 004746 628 -WGGDIPMVQISALKGEKVDDLLETIMLVAELQELKA-------NPHRNAKGTVIEAGL--H-KSKGPVATFILQNGTLK 696 (732)
Q Consensus 628 -~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~-------~p~r~a~g~Vies~~--d-kgrG~VatglV~~GtLk 696 (732)
-+.-+|++..||.++.||+.|++.|......+.-.. ....++.++|+.+.. | +.+|.++.++|.+|+|+
T Consensus 245 ~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~ 324 (527)
T TIGR00503 245 HGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYE 324 (527)
T ss_pred hcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEEEeeeEEc
Confidence 011246789999999999999999998765432111 123458899999987 7 58999999999999999
Q ss_pred cCCEEEEcC--eeEEEEEE---EcCCCCccceecCCCCeeC
Q 004746 697 KGDVVVCGE--AFGKVRAL---FDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 697 ~GD~Iv~G~--~~gkVrsI---~~~~g~~V~~A~pG~~V~I 732 (732)
.|+.|.... ..-+|..+ +...-..+++|.||+.+.|
T Consensus 325 ~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~ 365 (527)
T TIGR00503 325 KGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGL 365 (527)
T ss_pred CCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEE
Confidence 999997632 23355544 4444467999999998753
No 47
>PRK00007 elongation factor G; Reviewed
Probab=99.89 E-value=6.4e-22 Score=231.57 Aligned_cols=240 Identities=26% Similarity=0.330 Sum_probs=182.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc---c---c------------cccCCceeeeeeEEEEeecCCcceeEEEEeCC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV---A---A------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTP 550 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~---~---v------------se~~GtTrdI~~y~v~i~idgk~i~ItLIDTP 550 (732)
.+..+|+|+||+|+|||||+++|+...- . + ...+|+|++.....+.+ .++.++|+|||
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~----~~~~~~liDTP 83 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW----KDHRINIIDTP 83 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE----CCeEEEEEeCC
Confidence 3457999999999999999999973111 0 1 13567887765544433 35789999999
Q ss_pred CccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHH-cCCCC----
Q 004746 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS-IGLMP---- 625 (732)
Q Consensus 551 GhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~e-lgl~~---- 625 (732)
||.+|.....+.+..+|++|||+|+.+++..++.+++.++...++|+|+++||+|+...+..+...++.+ ++...
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 163 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQ 163 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEE
Confidence 9999988888889999999999999999999999999999999999999999999987665555544432 11100
Q ss_pred --------------------CCC---------------------------------------------------------
Q 004746 626 --------------------EDW--------------------------------------------------------- 628 (732)
Q Consensus 626 --------------------e~~--------------------------------------------------------- 628 (732)
..|
T Consensus 164 ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~ 243 (693)
T PRK00007 164 LPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKA 243 (693)
T ss_pred ecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHH
Confidence 001
Q ss_pred --------CCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhh------------------ccCCCCCccceEEEEeeccCC
Q 004746 629 --------GGDIPMVQISALKGEKVDDLLETIMLVAELQEL------------------KANPHRNAKGTVIEAGLHKSK 682 (732)
Q Consensus 629 --------gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~l------------------k~~p~r~a~g~Vies~~dkgr 682 (732)
+.-+|++..||+++.|++.|++.|......+.. ..+++.++.++|+....++..
T Consensus 244 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~ 323 (693)
T PRK00007 244 ALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFV 323 (693)
T ss_pred HHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCC
Confidence 022467778999999999999999876543210 113456788899999999999
Q ss_pred CceEEEEEEeeEEecCCEEEEcC-----eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 683 GPVATFILQNGTLKKGDVVVCGE-----AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 683 G~VatglV~~GtLk~GD~Iv~G~-----~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
|.++.++|.+|+|+.||.|.... ..+++..+.......+++|.+|+.+.|
T Consensus 324 G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i 378 (693)
T PRK00007 324 GKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAA 378 (693)
T ss_pred CcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEE
Confidence 99999999999999999997532 223555555555567999999998754
No 48
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=6.4e-22 Score=185.70 Aligned_cols=157 Identities=31% Similarity=0.491 Sum_probs=115.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCC---ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTK---VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k---~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+|+|+|++|+|||||+++|.+.. +.....+++|.++.++.+.+ .. ++.+.||||||++.|......++..+|++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~i 78 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDL--PS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLV 78 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEe--cC-CcEEEEEECCChHHHHHHHHhhhhcCCEE
Confidence 69999999999999999998643 22334567888877665544 21 45899999999999987777788999999
Q ss_pred EEEEEecCCCChhhHHHHHHHHhcCC-CEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 570 VIVVAADDGIRPQTNEAIAHAKAAGV-PIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 570 ILVVDasdgi~~qt~EiL~~ak~~~v-PIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
|+|+|+++++..+..+.+..+...+. |+|+|+||+|+.... ......++.+. + ...+....+++++||++|.|+++
T Consensus 79 i~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 79 LLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIREL-L-AGTFLADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred EEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHH-H-HhcCcCCCcEEEEeCCCCcCHHH
Confidence 99999998877887777766666666 899999999996532 11122222211 0 00001246899999999999999
Q ss_pred HHHHHHH
Q 004746 648 LLETIML 654 (732)
Q Consensus 648 Lfe~Ii~ 654 (732)
+++.|..
T Consensus 157 l~~~l~~ 163 (164)
T cd04171 157 LKEYLDE 163 (164)
T ss_pred HHHHHhh
Confidence 9998753
No 49
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.88 E-value=9.2e-22 Score=189.03 Aligned_cols=158 Identities=32% Similarity=0.449 Sum_probs=116.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccc---------------cccCCceeeeeeEEEEeec-CCcceeEEEEeCCCcccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAA---------------AEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAF 555 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~v---------------se~~GtTrdI~~y~v~i~i-dgk~i~ItLIDTPGhE~f 555 (732)
.+|+++|++|||||||+++|++..... ....|+|.......+.+.. ++..+.++||||||+++|
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 379999999999999999998642110 1123444433222222211 566788999999999999
Q ss_pred chhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHH-cCCCCCCCCCCCCE
Q 004746 556 GAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS-IGLMPEDWGGDIPM 634 (732)
Q Consensus 556 ~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~e-lgl~~e~~gg~ipi 634 (732)
..++..++..+|++|+|||++++...++.+.+..+...++|+|+|+||+|+.........+++.+ +++. ...+
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~------~~~~ 154 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLD------PSEA 154 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC------cccE
Confidence 99999999999999999999988877777777666667899999999999965444433344433 2221 1358
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q 004746 635 VQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~l 655 (732)
+++||++|.||++|+++|...
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred EEeeccCCCCHHHHHHHHHhh
Confidence 999999999999999999754
No 50
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=9.8e-23 Score=227.65 Aligned_cols=220 Identities=19% Similarity=0.284 Sum_probs=155.8
Q ss_pred cchHHHHHHHhcCCHHHHHHHHHhCCCcccccccCCHHHHHHhhhhcCCeeeecCchhhHHHhhhccccChhhhhcccCC
Q 004746 411 GMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLEDR 490 (732)
Q Consensus 411 ~iav~qLag~Ls~~i~eiik~L~~lG~~~~in~~Ld~e~ie~ia~e~~~~~i~~~~~~ieell~~~~~~~e~~~~~l~~r 490 (732)
.++++||.|.|+..+..+++.|+.+...++...++++|+......+.....+.....+++++. .....+...+.
T Consensus 141 ~~al~~l~G~l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~l~~l~------~~~~~~~~~~~ 214 (449)
T PRK05291 141 RLALRQLQGALSKLINELREELLELLALVEAAIDFPEEDIEFLSDEKILEKLEELIAELEALL------ASARQGEILRE 214 (449)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHheEEccCCCCCcccccHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhc
Confidence 478999999999999999999999977667766666654321111111111111122223222 33445556677
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh--------hcc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM--------RAR 561 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~--------r~r 561 (732)
+++|+|+|++|+|||||+|+|++... .+++.+++|+++....+. ++ ++.+.||||||+..+... ...
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~--~~--g~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHIN--LD--GIPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEE--EC--CeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 89999999999999999999998765 467888999886444443 33 357999999998665432 223
Q ss_pred cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 562 ~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
++..+|++|+|||+++....+..+.+.. ..+.|+|+|+||+|+....... . ....+++++||++
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~------~--------~~~~~~i~iSAkt 354 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE------E--------ENGKPVIRISAKT 354 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh------h--------ccCCceEEEEeeC
Confidence 5688999999999998766655555544 4578999999999996432111 0 1135799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|.|+++|+++|....
T Consensus 355 g~GI~~L~~~L~~~l 369 (449)
T PRK05291 355 GEGIDELREAIKELA 369 (449)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998754
No 51
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.87 E-value=1.6e-21 Score=229.46 Aligned_cols=244 Identities=28% Similarity=0.314 Sum_probs=176.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc----------------ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA----------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~----------------vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
.+..+|+|+||++||||||+++|+...-. .....|+|++.....+.+.+++.++.++|+|||||
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 45679999999999999999999842211 12244677666555555444566789999999999
Q ss_pred cccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC----hHHHHHHHH---------
Q 004746 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN----PERVMQELS--------- 619 (732)
Q Consensus 553 E~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~----~erv~~eL~--------- 619 (732)
.+|......++..+|++|+|+|+.+++..++..++.++...++|+|+++||+|+...+ .+.....+.
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~ 177 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKL 177 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHH
Confidence 9999888899999999999999999999999999999888889999999999986432 222111111
Q ss_pred --HcCC--CCCCC---CCCCCEEEEecCCCCCHH----------------------------------HHHHHHHHHHhh
Q 004746 620 --SIGL--MPEDW---GGDIPMVQISALKGEKVD----------------------------------DLLETIMLVAEL 658 (732)
Q Consensus 620 --elgl--~~e~~---gg~ipiVeVSAKtGeGId----------------------------------eLfe~Ii~lael 658 (732)
.+.- ....| ..+-.+++.||+.+.++. .|++.|......
T Consensus 178 l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPs 257 (731)
T PRK07560 178 IKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPN 257 (731)
T ss_pred HHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCC
Confidence 1100 00011 112346788999987775 566666553322
Q ss_pred hh-----------------------hccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEE
Q 004746 659 QE-----------------------LKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRAL 713 (732)
Q Consensus 659 ~~-----------------------lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI 713 (732)
+. ...+++.++.+.|+....++++|.+++++|.+|+|+.||.|.... ...+|..|
T Consensus 258 P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i 337 (731)
T PRK07560 258 PIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQV 337 (731)
T ss_pred hhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEehee
Confidence 21 012345577889999999999999999999999999999998732 34577777
Q ss_pred EcCC---CCccceecCCCCeeC
Q 004746 714 FDDS---GNRVDEAGPSIPVQV 732 (732)
Q Consensus 714 ~~~~---g~~V~~A~pG~~V~I 732 (732)
+... ...+++|.||+.|.|
T Consensus 338 ~~~~g~~~~~v~~a~AGdIv~i 359 (731)
T PRK07560 338 GIYMGPEREEVEEIPAGNIAAV 359 (731)
T ss_pred hhhhcCCCceeeeECCCCEEEE
Confidence 6553 457999999998864
No 52
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.87 E-value=2.5e-21 Score=184.94 Aligned_cols=154 Identities=21% Similarity=0.335 Sum_probs=114.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|++|+|||||+++|+...+.....+ |.....+.....+++..+.+.||||||++.|..++..+++.+|++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLS--TYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCC--ceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEE
Confidence 4799999999999999999998877644433 33334455555567778899999999999999999999999999999
Q ss_pred EEEecCCCChhh-HHHHHHHHhc--CCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHH
Q 004746 572 VVAADDGIRPQT-NEAIAHAKAA--GVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (732)
Q Consensus 572 VVDasdgi~~qt-~EiL~~ak~~--~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeL 648 (732)
|||+++....+. .+++..++.. ++|+|+|+||+|+......+.. .+... ..++++++||++|.|++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~~--------~~~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKF-NFAEK--------HNLPLYYVSAADGTNVVKL 149 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHH-HHHHH--------cCCeEEEEeCCCCCCHHHH
Confidence 999987544333 2344444333 7899999999998432211111 11111 1357999999999999999
Q ss_pred HHHHHHHH
Q 004746 649 LETIMLVA 656 (732)
Q Consensus 649 fe~Ii~la 656 (732)
|+.|+...
T Consensus 150 ~~~l~~~~ 157 (161)
T cd04124 150 FQDAIKLA 157 (161)
T ss_pred HHHHHHHH
Confidence 99998643
No 53
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=8.7e-22 Score=205.73 Aligned_cols=230 Identities=31% Similarity=0.364 Sum_probs=173.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCC----------------ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTK----------------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k----------------~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~ 554 (732)
..+|..|||.+||||||..+|...- .......|+|+. ..++++. -....+-++|+|||.+
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIn--tahveye--t~~rhyahVDcPGHaD 87 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITIN--TAHVEYE--TANRHYAHVDCPGHAD 87 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceec--cceeEEe--cCCceEEeccCCChHH
Confidence 4589999999999999999885211 112345688854 4455543 3456899999999999
Q ss_pred cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCC-C-----hHHHHHHHHHcCCCCCC
Q 004746 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGA-N-----PERVMQELSSIGLMPED 627 (732)
Q Consensus 555 f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a-~-----~erv~~eL~elgl~~e~ 627 (732)
|.+.+..++.+.|++|||++++++.++|++|++..++..++| +++++||+|+.+. + ..+++..|..++|.
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~--- 164 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP--- 164 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC---
Confidence 999999999999999999999999999999999999999998 8899999999752 2 12344455666654
Q ss_pred CCCCCCEEEEecCCC-CC-------HHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCC
Q 004746 628 WGGDIPMVQISALKG-EK-------VDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGD 699 (732)
Q Consensus 628 ~gg~ipiVeVSAKtG-eG-------IdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD 699 (732)
+.+.|++.-||+.- +| |.+|++++.... +......+.++.-.|-+++...|+|+|++|+|.+|+|++||
T Consensus 165 -gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi--p~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~ 241 (394)
T COG0050 165 -GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI--PTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGE 241 (394)
T ss_pred -CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC--CCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCC
Confidence 34578888887653 32 344554444322 22233445677778888888899999999999999999999
Q ss_pred EEEE-cC---eeEEEEEEEcCCCCccceecCCCCee
Q 004746 700 VVVC-GE---AFGKVRALFDDSGNRVDEAGPSIPVQ 731 (732)
Q Consensus 700 ~Iv~-G~---~~gkVrsI~~~~g~~V~~A~pG~~V~ 731 (732)
.+.+ |. ....|..+...+ +.++++.+|+.|-
T Consensus 242 eveivG~~~~~kttvtgvemfr-k~ld~~~AGdnvg 276 (394)
T COG0050 242 EVEIVGIKETQKTTVTGVEMFR-KLLDEGQAGDNVG 276 (394)
T ss_pred EEEEecccccceeEEEhHHHHH-HHHhccccCCCcc
Confidence 9988 33 345677776674 6788999998874
No 54
>PRK12740 elongation factor G; Reviewed
Probab=99.87 E-value=4.4e-21 Score=223.41 Aligned_cols=232 Identities=31% Similarity=0.379 Sum_probs=177.6
Q ss_pred EeCCCCCHHHHHHHHHcCCcc------------------ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh
Q 004746 497 MGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM 558 (732)
Q Consensus 497 VG~~nvGKSSLLnrLl~~k~~------------------vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~ 558 (732)
+||+|||||||+++|+...-. ....+|+|.+.....+.+ .++.++|||||||.+|...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~----~~~~i~liDtPG~~~~~~~ 76 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW----KGHKINLIDTPGHVDFTGE 76 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE----CCEEEEEEECCCcHHHHHH
Confidence 699999999999999632211 112456776654444432 4578999999999999888
Q ss_pred hcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCCC------------
Q 004746 559 RARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP------------ 625 (732)
Q Consensus 559 r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~~------------ 625 (732)
+..++..+|++|+|+|++++...++..++..+...++|+|+|+||+|+...+..+....+.+. +...
T Consensus 77 ~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~ 156 (668)
T PRK12740 77 VERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDD 156 (668)
T ss_pred HHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCC
Confidence 888899999999999999999999988888888889999999999999876655555555431 1100
Q ss_pred --------C---------------------------------------------------C---------------CCCC
Q 004746 626 --------E---------------------------------------------------D---------------WGGD 631 (732)
Q Consensus 626 --------e---------------------------------------------------~---------------~gg~ 631 (732)
. . .+.-
T Consensus 157 ~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~ 236 (668)
T PRK12740 157 FTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEI 236 (668)
T ss_pred ceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCE
Confidence 0 0 0012
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHhhhh---------------hccCCCCCccceEEEEeeccCCCceEEEEEEeeEEe
Q 004746 632 IPMVQISALKGEKVDDLLETIMLVAELQE---------------LKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLK 696 (732)
Q Consensus 632 ipiVeVSAKtGeGIdeLfe~Ii~lael~~---------------lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk 696 (732)
+|++..||++|.|++.|++.|......+. ...+++.++.++|+++..+++.|.++.++|.+|+|+
T Consensus 237 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~ 316 (668)
T PRK12740 237 VPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLK 316 (668)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEc
Confidence 56889999999999999999987644332 123556778899999999999999999999999999
Q ss_pred cCCEEEEcCe-----eEEEEEEEcCCCCccceecCCCCeeC
Q 004746 697 KGDVVVCGEA-----FGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 697 ~GD~Iv~G~~-----~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
.||.|.++.. .++|..+.......+++|.+|+.+.|
T Consensus 317 ~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i 357 (668)
T PRK12740 317 KGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAV 357 (668)
T ss_pred CCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEE
Confidence 9999988542 24566666555678999999998754
No 55
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.86 E-value=3.9e-21 Score=180.73 Aligned_cols=153 Identities=19% Similarity=0.211 Sum_probs=112.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|++++|||||+++|++..+...+.+.++ +.+....+.+++..+.++||||||++.|..++..+++.+|++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIG--IDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLL 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--eeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEE
Confidence 4899999999999999999998887665555333 33334444556778899999999999999998889999999999
Q ss_pred EEEecCCCChhh-HHHHHHH----Hh----cCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 572 VVAADDGIRPQT-NEAIAHA----KA----AGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 572 VVDasdgi~~qt-~EiL~~a----k~----~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
|+|+++....+. .+++..+ .. .+.|+|+|+||+|+.. ...+......... .++++++||
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa 149 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESK---------GFKYFETSA 149 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHc---------CCeEEEEEC
Confidence 999987432221 1222222 11 3588999999999862 1222322222222 257999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 004746 640 LKGEKVDDLLETIMLV 655 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~l 655 (732)
++|.|++++|++|...
T Consensus 150 ~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 150 CTGEGVNEMFQTLFSS 165 (168)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999998753
No 56
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.86 E-value=1.4e-21 Score=218.01 Aligned_cols=218 Identities=17% Similarity=0.188 Sum_probs=153.6
Q ss_pred cchHHHHHHHhcCCHHHHHHHHHhCCCcccccccCCHHHHHHhhhhcCCeeeecCchhhHHHhhhccccChhhhhcccCC
Q 004746 411 GMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLEDR 490 (732)
Q Consensus 411 ~iav~qLag~Ls~~i~eiik~L~~lG~~~~in~~Ld~e~ie~ia~e~~~~~i~~~~~~ieell~~~~~~~e~~~~~l~~r 490 (732)
.++++||.|.|+..+..+++.|+.+.+.++.+.++++|+... .++. ..+......++.++ ... .....+.
T Consensus 133 ~~A~~~l~G~ls~~~~~~r~~l~~~~a~iea~iDf~ee~~~~--~~~~-~~l~~~~~~l~~ll------~~~-~~~~~~~ 202 (442)
T TIGR00450 133 DIALNKLAGELDQKIEAIRKSLLQLLAQVEVNIDYEEDDDEQ--DSLN-QLLLSIIAELKDIL------NSY-KLEKLDD 202 (442)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHeeEECCcCCCCccH--HHHH-HHHHHHHHHHHHHH------HHH-HHHHhhc
Confidence 589999999999999999999999977777777776654221 1110 11111222333333 333 3356778
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh--------hcc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM--------RAR 561 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~--------r~r 561 (732)
+++|+|+|++|+|||||+|+|++... .++..+|+|+++....+. ++ ++.+.||||||+..+... ...
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~--~~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFE--LN--GILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEE--EC--CEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 89999999999999999999998754 467889999886444443 33 467899999997554321 234
Q ss_pred cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 562 ~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+++.+|++|+|||+++....+.. ++..+...++|+|+|+||+|+...+. ..+.. .+ ..+++++||++
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~~----~~~~~------~~--~~~~~~vSak~ 345 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINSL----EFFVS------SK--VLNSSNLSAKQ 345 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcch----hhhhh------hc--CCceEEEEEec
Confidence 66899999999999987665554 55556556899999999999964321 11111 11 24689999998
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
.||+++++.|....
T Consensus 346 -~gI~~~~~~L~~~i 359 (442)
T TIGR00450 346 -LKIKALVDLLTQKI 359 (442)
T ss_pred -CCHHHHHHHHHHHH
Confidence 69999998887643
No 57
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.86 E-value=4e-21 Score=225.73 Aligned_cols=244 Identities=27% Similarity=0.325 Sum_probs=168.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC---------------Ccc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT---------------KVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~---------------k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
.+..+|+|+||.|||||||+++|+.. .+. .....++|++.......+.+++.++.++|||||||
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34579999999999999999999742 111 12236777776655544445677889999999999
Q ss_pred cccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCCh----HHHHHHHHH----c-CC
Q 004746 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP----ERVMQELSS----I-GL 623 (732)
Q Consensus 553 E~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~----erv~~eL~e----l-gl 623 (732)
.+|......++..+|++|+|+|+.+++..++.++++++...++|+|+++||+|+...+. +.+...+.. . .+
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~ 176 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNKL 176 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhh
Confidence 99998888899999999999999999999999999998888999999999999864322 222221111 0 00
Q ss_pred C----CCC----CC---CCCCEEEEecCCC------------CCHHH----------------------HHHHHHHHHhh
Q 004746 624 M----PED----WG---GDIPMVQISALKG------------EKVDD----------------------LLETIMLVAEL 658 (732)
Q Consensus 624 ~----~e~----~g---g~ipiVeVSAKtG------------eGIde----------------------Lfe~Ii~lael 658 (732)
. ... |. .+......|++.+ ...++ |++.|......
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPs 256 (720)
T TIGR00490 177 IKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLPS 256 (720)
T ss_pred hhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCCC
Confidence 0 000 00 0011222333333 22222 34444332211
Q ss_pred hh-----------------------hccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEc--CeeEEEEEE
Q 004746 659 QE-----------------------LKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCG--EAFGKVRAL 713 (732)
Q Consensus 659 ~~-----------------------lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G--~~~gkVrsI 713 (732)
+. ...+++.++.++|++...+++.|.+++++|.+|+|+.||.|++. ....+|+.|
T Consensus 257 P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l 336 (720)
T TIGR00490 257 PIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQV 336 (720)
T ss_pred hhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEE
Confidence 10 01134556788999999999999999999999999999999773 345678887
Q ss_pred EcCC---CCccceecCCCCeeC
Q 004746 714 FDDS---GNRVDEAGPSIPVQV 732 (732)
Q Consensus 714 ~~~~---g~~V~~A~pG~~V~I 732 (732)
+... ...+++|.||+.|.|
T Consensus 337 ~~~~g~~~~~v~~a~aGdIv~i 358 (720)
T TIGR00490 337 GVYMGPERVEVDEIPAGNIVAV 358 (720)
T ss_pred EEeccCCccCccEECCCCEEEE
Confidence 6543 457999999998864
No 58
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.86 E-value=2.7e-21 Score=190.58 Aligned_cols=166 Identities=24% Similarity=0.353 Sum_probs=121.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC-------CccccccCCceeeeeeEEEEee----------cCCcceeEEEEeCCCccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKT-------KVAAAEAGGITQGIGAYKVQVP----------VDGKLQPCVFLDTPGHEA 554 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~-------k~~vse~~GtTrdI~~y~v~i~----------idgk~i~ItLIDTPGhE~ 554 (732)
++|+|+|++|||||||+++|+.. .......+|+|+++.+..+.+. ..+..+.++|||||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999862 2234456789999887777654 124467899999999987
Q ss_pred cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHH-cCCCC-CCCCCC
Q 004746 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSS-IGLMP-EDWGGD 631 (732)
Q Consensus 555 f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~e-lgl~~-e~~gg~ 631 (732)
|......++..+|++++|+|++++...++.+.+..+...++|+++++||+|+.... .+....++.+ +.... ......
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKN 160 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 76665566688999999999999888887777766666789999999999986422 2222222211 00000 000124
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHh
Q 004746 632 IPMVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 632 ipiVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
++++++||++|.|+++|+++|..+..
T Consensus 161 ~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 161 SPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CCEEEEeccCCCCHHHHHHHHHhccc
Confidence 78999999999999999999987653
No 59
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.6e-21 Score=204.18 Aligned_cols=230 Identities=32% Similarity=0.372 Sum_probs=175.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC-------C---------ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT-------K---------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~-------k---------~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~ 554 (732)
..+|.-|||++||||||.-++.+- + .......|||+. ..++++. -...++--+|+|||.+
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn--~aHveYe--Ta~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITIN--AAHVEYE--TAKRHYAHTDCPGHAD 129 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEe--eeeeeee--ccccccccCCCCchHH
Confidence 358999999999999999988521 1 112346688854 5566653 3445788999999999
Q ss_pred cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCC-CCh-----HHHHHHHHHcCCCCCC
Q 004746 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDG-ANP-----ERVMQELSSIGLMPED 627 (732)
Q Consensus 555 f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~-a~~-----erv~~eL~elgl~~e~ 627 (732)
|.+.+..++.+-|++|||++++|+.++|++|++..++.-+++ ++|.+||.|+.+ .+. -++++.|.+++|.
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~--- 206 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD--- 206 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC---
Confidence 999999999999999999999999999999999999999998 889999999973 222 2344556667764
Q ss_pred CCCCCCEEEEecCC---CC----C---HHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEec
Q 004746 628 WGGDIPMVQISALK---GE----K---VDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKK 697 (732)
Q Consensus 628 ~gg~ipiVeVSAKt---Ge----G---IdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~ 697 (732)
|.++|++.-||+. |. | |.+|++++... ++....+.+.+|...|-+++...|||+|++|++.+|+|++
T Consensus 207 -Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsy--ip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKk 283 (449)
T KOG0460|consen 207 -GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSY--IPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKK 283 (449)
T ss_pred -CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhcc--CCCcccccCCCceeehhheeeecCCceEEEEEEeeccccc
Confidence 4568999988764 42 2 34444444322 2222334456777778788889999999999999999999
Q ss_pred CCEEEE-cC---eeEEEEEEEcCCCCccceecCCCCee
Q 004746 698 GDVVVC-GE---AFGKVRALFDDSGNRVDEAGPSIPVQ 731 (732)
Q Consensus 698 GD~Iv~-G~---~~gkVrsI~~~~g~~V~~A~pG~~V~ 731 (732)
||.+.+ |. ....|..|+.+ .+.+++|.+|+.+.
T Consensus 284 G~e~eivG~~~~lkttvtgiemF-~K~ld~a~AGDn~G 320 (449)
T KOG0460|consen 284 GDEVEIVGHNKTLKTTVTGIEMF-RKSLDEAQAGDNLG 320 (449)
T ss_pred CCEEEEeccCcceeeEeehHHHH-HHHHHhccccccee
Confidence 999988 32 34578888888 58999999999875
No 60
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.86 E-value=5.7e-21 Score=178.57 Aligned_cols=151 Identities=23% Similarity=0.273 Sum_probs=109.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|.+|+|||||+++|.+..+.....+.+ .+ .+...+.+++..+.+.||||||++.|..++..+++.+|++++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~-~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~ 78 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-ED--SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 78 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcc-hh--eEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEE
Confidence 589999999999999999999877654443322 22 233444556777789999999999999999999999999999
Q ss_pred EEEecCCCChhhH-HHHHHH----HhcCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRPQTN-EAIAHA----KAAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~qt~-EiL~~a----k~~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|||+++....+.. .++..+ ...++|+|+|+||+|+.... ........... .++++++||++|.|
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~g 149 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSY---------GIPYIETSAKTRQG 149 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHh---------CCeEEEecCCCCCC
Confidence 9999874322221 122222 23478999999999986522 12222222222 25799999999999
Q ss_pred HHHHHHHHHH
Q 004746 645 VDDLLETIML 654 (732)
Q Consensus 645 IdeLfe~Ii~ 654 (732)
++++|++|+.
T Consensus 150 i~~l~~~l~~ 159 (162)
T cd04138 150 VEEAFYTLVR 159 (162)
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 61
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7.3e-21 Score=212.85 Aligned_cols=234 Identities=23% Similarity=0.284 Sum_probs=182.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-------------------------------ccccCCceeeeeeEEEEeecC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-------------------------------AAEAGGITQGIGAYKVQVPVD 538 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-------------------------------vse~~GtTrdI~~y~v~i~id 538 (732)
....++++||+++|||||+.+|+..--. .....|+|.++....++
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe---- 251 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE---- 251 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe----
Confidence 4468999999999999999998532110 13456778777555544
Q ss_pred CcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCC-------CChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCC
Q 004746 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-------IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN 610 (732)
Q Consensus 539 gk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdg-------i~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~ 610 (732)
.....++|+|+|||.+|...+..++..||+++||+|++.+ ...|++|+...++.+|+. +||++||+|+.+++
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence 4567899999999999999999999999999999999953 467899999999999987 99999999999998
Q ss_pred hHHHHHHHHH--------cCCCCCCCCCCCCEEEEecCCCCCHHH------HHHHH-----HHHHhh-hhhccCCCCCcc
Q 004746 611 PERVMQELSS--------IGLMPEDWGGDIPMVQISALKGEKVDD------LLETI-----MLVAEL-QELKANPHRNAK 670 (732)
Q Consensus 611 ~erv~~eL~e--------lgl~~e~~gg~ipiVeVSAKtGeGIde------Lfe~I-----i~lael-~~lk~~p~r~a~ 670 (732)
.+++...... .||.. .++.|++||+.+|+|+-. |.+|- +.+.+. .......+.|+.
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~e----s~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ 407 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKE----SSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLR 407 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCccc----CCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeE
Confidence 8776654333 33332 346899999999999853 33332 111111 111122456888
Q ss_pred ceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 671 GTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 671 g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
..|.+++..++.|..++|+|..|.|+.||.|++++ ..+.|+.|..+ .++...|.+|+.|.+
T Consensus 408 ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~-~~~~~~a~AGD~Vsl 470 (603)
T KOG0458|consen 408 LTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSN-DEPKTWAVAGDNVSL 470 (603)
T ss_pred EEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecC-CCcceeEeeCCEEEE
Confidence 89999998999999999999999999999999966 46899999988 589999999999864
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.86 E-value=7.9e-21 Score=179.05 Aligned_cols=152 Identities=22% Similarity=0.253 Sum_probs=109.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+++|.+|+|||||+++|++..+..... .++.+. +.....+++..+.+.||||||+++|..++..+++.+|++++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~-~t~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYD-PTIEDS--YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccC-CCccce--EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 689999999999999999999876643333 333322 23333456777889999999999999999999999999999
Q ss_pred EEEecCCCChhhH-HHH----HHHHhcCCCEEEEEeCCCCCCCC---hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 572 VVAADDGIRPQTN-EAI----AHAKAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 572 VVDasdgi~~qt~-EiL----~~ak~~~vPIIVViNKiDL~~a~---~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
|||+++....+.. .++ +.....++|+|+|+||+|+.... .+......... .++++++||++|.
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 150 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKL---------KIPYIETSAKDRL 150 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHc---------CCcEEEeeCCCCC
Confidence 9999974322221 122 22223478999999999986432 22222222221 2579999999999
Q ss_pred CHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLV 655 (732)
Q Consensus 644 GIdeLfe~Ii~l 655 (732)
||+++|++|+..
T Consensus 151 ~i~~l~~~l~~~ 162 (164)
T cd04145 151 NVDKAFHDLVRV 162 (164)
T ss_pred CHHHHHHHHHHh
Confidence 999999999754
No 63
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.86 E-value=6e-21 Score=179.71 Aligned_cols=153 Identities=22% Similarity=0.281 Sum_probs=110.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|.+|+|||||+++|....+.....+ ++. ..+...+.+++..+.+.||||||++.|..++..+++.+|++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~-t~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 78 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDP-TIE--DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVL 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCC-chh--hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEE
Confidence 6899999999999999999998776544333 222 2344445567777889999999999999999999999999999
Q ss_pred EEEecCCCChhh-HHHHHHHH----hcCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~qt-~EiL~~ak----~~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|||+++....+. ..++..+. ..++|+|+|+||+|+.... .......+.. .+ ..+++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~ 150 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR------QW--GCPFYETSAKSKIN 150 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH------Hc--CCeEEEecCCCCCC
Confidence 999987433222 22222222 2368999999999985421 1111222222 12 26799999999999
Q ss_pred HHHHHHHHHHH
Q 004746 645 VDDLLETIMLV 655 (732)
Q Consensus 645 IdeLfe~Ii~l 655 (732)
++++|++|...
T Consensus 151 v~~l~~~l~~~ 161 (163)
T cd04136 151 VDEVFADLVRQ 161 (163)
T ss_pred HHHHHHHHHHh
Confidence 99999999753
No 64
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=1.5e-20 Score=186.60 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=114.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecC-CcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-GKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~id-gk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
++|+|+|.+|+|||||+++|+...+...+.+ |.+..++...+.++ +..+.+.||||||++.|..++..+++.+|++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~--t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~i 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKA--TIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAI 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEE
Confidence 4899999999999999999998877654444 44444444444455 67789999999999999999999999999999
Q ss_pred EEEEecCCCChhhHH-HHHHHH-------hcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 571 IVVAADDGIRPQTNE-AIAHAK-------AAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 571 LVVDasdgi~~qt~E-iL~~ak-------~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
||||+++....+... ++..+. ..++|+|+|+||+|+.. ...++..+.....++ ..++++||
T Consensus 79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~e~Sa 150 (201)
T cd04107 79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGF--------IGWFETSA 150 (201)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCC--------ceEEEEeC
Confidence 999998743332221 112111 24689999999999952 233344333333321 46999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 004746 640 LKGEKVDDLLETIMLVA 656 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~la 656 (732)
++|.||+++|++|....
T Consensus 151 k~~~~v~e~f~~l~~~l 167 (201)
T cd04107 151 KEGINIEEAMRFLVKNI 167 (201)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998654
No 65
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.1e-20 Score=199.48 Aligned_cols=237 Identities=28% Similarity=0.368 Sum_probs=184.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC---CccccccCCceeeeeeEEEEeec------------------C----CcceeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT---KVAAAEAGGITQGIGAYKVQVPV------------------D----GKLQPC 544 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~---k~~vse~~GtTrdI~~y~v~i~i------------------d----gk~i~I 544 (732)
-..+|.++||++||||||..+|.+- ++...-..|+|+.+++....+.- . .--..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 3468999999999999999999853 33344567788777654433210 0 012468
Q ss_pred EEEeCCCccccchhhcccccccCeEEEEEEecC-CCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCChHHHHHHHHH-c
Q 004746 545 VFLDTPGHEAFGAMRARGARVTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPERVMQELSS-I 621 (732)
Q Consensus 545 tLIDTPGhE~f~~~r~r~~~~ADiVILVVDasd-gi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~~erv~~eL~e-l 621 (732)
.|+|.||||-+...+..++..-|++|||+++++ ..++|+.|++..+.-.++. +|++-||+|+.. .++..+...+ .
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~--~E~AlE~y~qIk 166 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS--RERALENYEQIK 166 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec--HHHHHHHHHHHH
Confidence 899999999999988899999999999999997 4689999999988877876 999999999954 3333333333 2
Q ss_pred CCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEee--------ccCCCceEEEEEEee
Q 004746 622 GLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGL--------HKSKGPVATFILQNG 693 (732)
Q Consensus 622 gl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~--------dkgrG~VatglV~~G 693 (732)
.|....|..+.|++++||..+.|||.|+++|.... +....+++.++..+|+.++- ++-+|-|+-|.+.+|
T Consensus 167 ~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I--ptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G 244 (415)
T COG5257 167 EFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI--PTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQG 244 (415)
T ss_pred HHhcccccCCCceeeehhhhccCHHHHHHHHHHhC--CCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeee
Confidence 34455666789999999999999999999998743 45556778888888888873 234789999999999
Q ss_pred EEecCCEEEE--c------------CeeEEEEEEEcCCCCccceecCCCCee
Q 004746 694 TLKKGDVVVC--G------------EAFGKVRALFDDSGNRVDEAGPSIPVQ 731 (732)
Q Consensus 694 tLk~GD~Iv~--G------------~~~gkVrsI~~~~g~~V~~A~pG~~V~ 731 (732)
.|++||.|.+ | +.+.+|.+|+-. ++.+++|.||--|.
T Consensus 245 ~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag-~~~~~ea~PGGLvg 295 (415)
T COG5257 245 VLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAG-GEDVEEARPGGLVG 295 (415)
T ss_pred eEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeC-CeeeeeccCCceEE
Confidence 9999999987 1 246789999876 79999999996654
No 66
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.85 E-value=1.4e-20 Score=181.46 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=114.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+++|.+|+|||||+++|+...+.....+ |.++..+.+.+..++..+.+.+|||||++.|..++..++..+|++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVA--TLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAII 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEE
Confidence 4899999999999999999997766543333 55555556666567777899999999999999888888899999999
Q ss_pred EEEecCCCChhhH-HHHHHHHh--cCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHH
Q 004746 572 VVAADDGIRPQTN-EAIAHAKA--AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (732)
Q Consensus 572 VVDasdgi~~qt~-EiL~~ak~--~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeL 648 (732)
|||+++....+.. .++..+.. .++|+|+|+||+|+...........+... ..+.++++||++|+||+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~--------~~~~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRK--------KNLQYYEISAKSNYNFEKP 150 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHH--------cCCEEEEEeCCCCCChHHH
Confidence 9999975443322 22233322 16999999999999643221111222221 2367999999999999999
Q ss_pred HHHHHHHH
Q 004746 649 LETIMLVA 656 (732)
Q Consensus 649 fe~Ii~la 656 (732)
|++|....
T Consensus 151 f~~l~~~~ 158 (166)
T cd00877 151 FLWLARKL 158 (166)
T ss_pred HHHHHHHH
Confidence 99998643
No 67
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.85 E-value=9.6e-21 Score=179.18 Aligned_cols=153 Identities=24% Similarity=0.317 Sum_probs=110.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|++|+|||||+++|.+..+.....+. +.+ .+.....+++..+.+.||||||++.|..++..+++.+|++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t-~~~--~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 77 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPT-IED--SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCc-hhh--hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEE
Confidence 48999999999999999999987765444432 222 233444456777889999999999999999999999999999
Q ss_pred EEEecCCCChhhH-HHHHH----HHhcCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRPQTN-EAIAH----AKAAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~qt~-EiL~~----ak~~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|||+++....+.. .+... ....++|+|+|+||+|+.... .......+... + .++++++||++|.|
T Consensus 78 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~------~--~~~~~~~Sa~~~~~ 149 (164)
T smart00173 78 VYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ------W--GCPFLETSAKERVN 149 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH------c--CCEEEEeecCCCCC
Confidence 9999874322221 11122 222368999999999986421 11222222221 1 25799999999999
Q ss_pred HHHHHHHHHHH
Q 004746 645 VDDLLETIMLV 655 (732)
Q Consensus 645 IdeLfe~Ii~l 655 (732)
++++|++|+..
T Consensus 150 i~~l~~~l~~~ 160 (164)
T smart00173 150 VDEAFYDLVRE 160 (164)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 68
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.4e-21 Score=189.48 Aligned_cols=158 Identities=22% Similarity=0.230 Sum_probs=124.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+-+||+++|+.|||||+|+.++....+...+.. |+++++....+.++|+.+++++|||+|+|+|..+...||+.|++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~s--TIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYIS--TIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcc--eeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 3457999999999999999999999988766554 77777777777789999999999999999999999999999999
Q ss_pred EEEEEEecCCCCh----hhHHHHHHHHhcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCC-EEEEecC
Q 004746 569 AVIVVAADDGIRP----QTNEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIP-MVQISAL 640 (732)
Q Consensus 569 VILVVDasdgi~~----qt~EiL~~ak~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ip-iVeVSAK 640 (732)
||+|||+++.... +|++-+......++|.++|+||||+.+. ..+.......++ +.+ |+++|||
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~---------~~~~f~ETSAK 155 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADEL---------GIPIFLETSAK 155 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhc---------CCcceeecccC
Confidence 9999999984332 2333333334457899999999999653 223332222232 245 9999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 004746 641 KGEKVDDLLETIMLVAE 657 (732)
Q Consensus 641 tGeGIdeLfe~Ii~lae 657 (732)
++.|+++.|..|.....
T Consensus 156 ~~~NVe~~F~~la~~lk 172 (205)
T KOG0084|consen 156 DSTNVEDAFLTLAKELK 172 (205)
T ss_pred CccCHHHHHHHHHHHHH
Confidence 99999999999986543
No 69
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.85 E-value=1.4e-20 Score=179.76 Aligned_cols=153 Identities=19% Similarity=0.184 Sum_probs=111.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|.+|+|||||+++|.+.++...+.+ |.++.+....+..++..+.+.||||||++.|..++..+++.+|++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVS--TVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEE
Confidence 5899999999999999999998887654444 33333333344446667889999999999999999999999999999
Q ss_pred EEEecCCCChh-hHHHHHHHHh---cCCCEEEEEeCCCCCCCC---hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRPQ-TNEAIAHAKA---AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~q-t~EiL~~ak~---~~vPIIVViNKiDL~~a~---~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|||+++....+ ..+++..+.. .+.|+++|+||+|+.... .++..+....+ .++++++||++|.|
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~g 150 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQL---------GFEFFEASAKENIN 150 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHc---------CCEEEEEECCCCCC
Confidence 99998642222 2223333322 367899999999995432 22222222222 24799999999999
Q ss_pred HHHHHHHHHHH
Q 004746 645 VDDLLETIMLV 655 (732)
Q Consensus 645 IdeLfe~Ii~l 655 (732)
+++||++|...
T Consensus 151 v~~l~~~l~~~ 161 (165)
T cd01865 151 VKQVFERLVDI 161 (165)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 70
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=9.5e-21 Score=201.00 Aligned_cols=236 Identities=27% Similarity=0.326 Sum_probs=184.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC-------CccccccCCceeeeeeEEEEeec-----CCcceeEEEEeCCCccccchhh
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKT-------KVAAAEAGGITQGIGAYKVQVPV-----DGKLQPCVFLDTPGHEAFGAMR 559 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~-------k~~vse~~GtTrdI~~y~v~i~i-----dgk~i~ItLIDTPGhE~f~~~r 559 (732)
.++.|+||.++|||||..+|... ....+...|+|.|+++..+.... .+....++|+|+|||..+....
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRti 87 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTI 87 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHH
Confidence 68999999999999999999732 22245568999999887766532 4566788999999999888777
Q ss_pred cccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-----hHHHHHHHHHcCCCCCCCCCCCCE
Q 004746 560 ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-----PERVMQELSSIGLMPEDWGGDIPM 634 (732)
Q Consensus 560 ~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-----~erv~~eL~elgl~~e~~gg~ipi 634 (732)
..++...|+.++|+|+..+.+.|+.|.+-.....-...|||+||+|+...+ .++....+ ...+....++++.|+
T Consensus 88 iggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~-~KtLe~t~f~g~~PI 166 (522)
T KOG0461|consen 88 IGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKV-RKTLESTGFDGNSPI 166 (522)
T ss_pred HhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHH-HHHHHhcCcCCCCce
Confidence 788899999999999999999999999887777677799999999974321 11111111 112333446678999
Q ss_pred EEEecCCC----CCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEE--cCeeE
Q 004746 635 VQISALKG----EKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVC--GEAFG 708 (732)
Q Consensus 635 VeVSAKtG----eGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~--G~~~g 708 (732)
+++||+.| ++|.+|.+.|... +.....++..++.-.|..-+..+|.|+|.||.|.+|.|+.|+.|.+ -+..-
T Consensus 167 ~~vsa~~G~~~~~~i~eL~e~l~s~--if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~r 244 (522)
T KOG0461|consen 167 VEVSAADGYFKEEMIQELKEALESR--IFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKR 244 (522)
T ss_pred eEEecCCCccchhHHHHHHHHHHHh--hcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhh
Confidence 99999999 7888888777643 3344556666666666666677999999999999999999999998 34566
Q ss_pred EEEEEEcCCCCccceecCCCCee
Q 004746 709 KVRALFDDSGNRVDEAGPSIPVQ 731 (732)
Q Consensus 709 kVrsI~~~~g~~V~~A~pG~~V~ 731 (732)
+|++|+.++ ++|.+|..|++..
T Consensus 245 kVKslqmf~-~~vtsa~~GdR~g 266 (522)
T KOG0461|consen 245 KVKSLQMFK-QRVTSAAAGDRAG 266 (522)
T ss_pred hhhhHHHHh-hhhhhhhccccee
Confidence 999999994 8999999999875
No 71
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.85 E-value=1.2e-20 Score=189.97 Aligned_cols=155 Identities=16% Similarity=0.177 Sum_probs=115.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILV 572 (732)
.|+++|..|||||||+.+|....+...+.+ |...+++...+.+++..+.+.||||+|++.|..++..+++.+|++|||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~--Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlV 79 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKS--GVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 79 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCC--cceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEE
Confidence 589999999999999999998888655444 444455555556677789999999999999999999999999999999
Q ss_pred EEecCCCChhhHH-HHHHHH---hcCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHH
Q 004746 573 VAADDGIRPQTNE-AIAHAK---AAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (732)
Q Consensus 573 VDasdgi~~qt~E-iL~~ak---~~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGId 646 (732)
||+++....+... ++..+. ..++|+|+|+||+|+.... .......+... . .++.|+++||++|.||+
T Consensus 80 fDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~-----~--~~~~~~etSAktg~gV~ 152 (202)
T cd04120 80 YDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQ-----I--TGMRFCEASAKDNFNVD 152 (202)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHh-----c--CCCEEEEecCCCCCCHH
Confidence 9999854433322 222222 3468999999999995321 11222222211 0 12579999999999999
Q ss_pred HHHHHHHHHH
Q 004746 647 DLLETIMLVA 656 (732)
Q Consensus 647 eLfe~Ii~la 656 (732)
++|++|+...
T Consensus 153 e~F~~l~~~~ 162 (202)
T cd04120 153 EIFLKLVDDI 162 (202)
T ss_pred HHHHHHHHHH
Confidence 9999998643
No 72
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.85 E-value=1.3e-20 Score=179.83 Aligned_cols=153 Identities=22% Similarity=0.199 Sum_probs=112.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|++|+|||||+++|....+...+.+ |.+..+....+.+++..+.+.||||||++.|..++..+++.+|++||
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPH--TIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 80 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCc--ccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 6899999999999999999998877544333 33334444444567777899999999999999998889999999999
Q ss_pred EEEecCCCChhhH-HHHHHHH---hcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~qt~-EiL~~ak---~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|||+++....+.. +++..+. ..+.|+++|+||+|+... ..++........ .++++++||++|.|
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~ 151 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADEN---------GLLFLECSAKTGEN 151 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHc---------CCEEEEEECCCCCC
Confidence 9999975433322 2333222 246789999999999643 223333222221 35799999999999
Q ss_pred HHHHHHHHHHH
Q 004746 645 VDDLLETIMLV 655 (732)
Q Consensus 645 IdeLfe~Ii~l 655 (732)
|+++|+.+...
T Consensus 152 i~e~f~~l~~~ 162 (166)
T cd04122 152 VEDAFLETAKK 162 (166)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 73
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.85 E-value=1.3e-20 Score=178.99 Aligned_cols=153 Identities=22% Similarity=0.263 Sum_probs=110.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|.+|+|||||+++|+...+.....+ ++.+ .+...+.+++..+.+.||||||++.|..++..+++.+|++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDP-TIED--SYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVL 78 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCC-cchh--eEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEE
Confidence 6899999999999999999997766543333 3322 223445556777889999999999999999999999999999
Q ss_pred EEEecCCCChhh-HHHHHHH----HhcCCCEEEEEeCCCCCCCCh--HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRPQT-NEAIAHA----KAAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~qt-~EiL~~a----k~~~vPIIVViNKiDL~~a~~--erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|||.++....+. .+++..+ ...++|+|+|+||+|+..... ......+.+. + .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------~--~~~~~~~Sa~~~~~ 150 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ------W--GCAFLETSAKAKIN 150 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHH------h--CCEEEEeeCCCCCC
Confidence 999986433222 1222222 235789999999999964211 1112222211 1 25799999999999
Q ss_pred HHHHHHHHHHH
Q 004746 645 VDDLLETIMLV 655 (732)
Q Consensus 645 IdeLfe~Ii~l 655 (732)
++++|++|...
T Consensus 151 v~~~~~~l~~~ 161 (164)
T cd04175 151 VNEIFYDLVRQ 161 (164)
T ss_pred HHHHHHHHHHH
Confidence 99999999753
No 74
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.85 E-value=2.1e-20 Score=176.17 Aligned_cols=152 Identities=18% Similarity=0.227 Sum_probs=110.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecC--CcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD--GKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~id--gk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
++|+|+|++|+|||||+++|....+.....+.+..+ +....+.+. +..+.+.||||||++.|...+..+++.+|++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 78 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVD--FLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEE--EEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEE
Confidence 479999999999999999999877765444433333 333333334 6678899999999999999998899999999
Q ss_pred EEEEEecCCCChhhHH-HHHHHH--hcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 570 VIVVAADDGIRPQTNE-AIAHAK--AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 570 ILVVDasdgi~~qt~E-iL~~ak--~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
++|||+++....+... ++..+. ..++|+|+|+||+|+... ..++........ .++++++||++|.
T Consensus 79 v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 149 (162)
T cd04106 79 ILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRL---------QLPLFRTSVKDDF 149 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHc---------CCeEEEEECCCCC
Confidence 9999998744333222 222222 247899999999998542 122222222222 2579999999999
Q ss_pred CHHHHHHHHHH
Q 004746 644 KVDDLLETIML 654 (732)
Q Consensus 644 GIdeLfe~Ii~ 654 (732)
|+++++++|..
T Consensus 150 ~v~~l~~~l~~ 160 (162)
T cd04106 150 NVTELFEYLAE 160 (162)
T ss_pred CHHHHHHHHHH
Confidence 99999999864
No 75
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.85 E-value=1.6e-20 Score=179.72 Aligned_cols=155 Identities=19% Similarity=0.155 Sum_probs=113.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+|+|.+|+|||||+++|....+...+.+.++ +.+....+.+++..+.+.||||||++.|..++..+++.+|++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~--~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIG--IDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCcc--ceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 47999999999999999999998887665544333 3333334445677789999999999999988888889999999
Q ss_pred EEEEecCCCChhh-HHHHHHHH---hcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 571 IVVAADDGIRPQT-NEAIAHAK---AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 571 LVVDasdgi~~qt-~EiL~~ak---~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
+|||+++....+. .+++..+. ..++|+++|+||+|+.+. ..++........ .++++++||++|.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 151 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEY---------GIKFLETSAKANI 151 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCC
Confidence 9999987543222 22222222 246899999999999642 222222222222 2579999999999
Q ss_pred CHHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLVA 656 (732)
Q Consensus 644 GIdeLfe~Ii~la 656 (732)
|++++|++|....
T Consensus 152 ~v~~~~~~i~~~~ 164 (167)
T cd01867 152 NVEEAFFTLAKDI 164 (167)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998643
No 76
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=1.9e-20 Score=178.31 Aligned_cols=154 Identities=18% Similarity=0.228 Sum_probs=111.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+|+|++|+|||||+++|....+...+.+ |....+....+.+++..+.+.||||||++.|..++..+++.+|++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGN--TIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCC--ccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 47899999999999999999998776544333 3333333344445666678999999999999988888899999999
Q ss_pred EEEEecCCCChhh-HHHHHHHH---hcCCCEEEEEeCCCCCCCC---hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 571 IVVAADDGIRPQT-NEAIAHAK---AAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 571 LVVDasdgi~~qt-~EiL~~ak---~~~vPIIVViNKiDL~~a~---~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
+|||+++....+. ..++..+. ..++|+|+|+||+|+.... ...........+ ...++++||++|.
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~e~Sa~~~~ 152 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNG--------MLAVLETSAKESQ 152 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcC--------CcEEEEEECCCCC
Confidence 9999998543322 22333332 3478999999999986432 222222222222 2468999999999
Q ss_pred CHHHHHHHHHH
Q 004746 644 KVDDLLETIML 654 (732)
Q Consensus 644 GIdeLfe~Ii~ 654 (732)
|++++|++|..
T Consensus 153 ~v~~~~~~l~~ 163 (165)
T cd01864 153 NVEEAFLLMAT 163 (165)
T ss_pred CHHHHHHHHHH
Confidence 99999999874
No 77
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.85 E-value=2.8e-20 Score=183.23 Aligned_cols=154 Identities=19% Similarity=0.212 Sum_probs=115.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+++|+.++|||||+.++....+...+.+ |... .+...+.+++..+.+.||||+|++.|..++..+++.+|++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~--Ti~~-~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~il 78 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFD-NFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 78 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCC--ccee-eeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEE
Confidence 5899999999999999999998888655544 3332 234445567888999999999999999999999999999999
Q ss_pred EEEecCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCCC------------hHHHHHHHHHcCCCCCCCCCCC-CE
Q 004746 572 VVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGAN------------PERVMQELSSIGLMPEDWGGDI-PM 634 (732)
Q Consensus 572 VVDasdgi~~qt~--EiL~~ak~--~~vPIIVViNKiDL~~a~------------~erv~~eL~elgl~~e~~gg~i-pi 634 (732)
|||+++....+.. .++..++. .++|+|+|+||+|+.+.. ..+....+... ... .|
T Consensus 79 vyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~--------~~~~~~ 150 (176)
T cd04133 79 AFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ--------IGAAAY 150 (176)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH--------cCCCEE
Confidence 9999986554432 34444432 378999999999995421 11112222221 123 59
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q 004746 635 VQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~la 656 (732)
++|||++|.||+++|+.++...
T Consensus 151 ~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 151 IECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EECCCCcccCHHHHHHHHHHHH
Confidence 9999999999999999998753
No 78
>PTZ00369 Ras-like protein; Provisional
Probab=99.85 E-value=2.1e-20 Score=183.82 Aligned_cols=155 Identities=21% Similarity=0.221 Sum_probs=112.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
..++|+|+|++|+|||||+++|.+..+.....+.+ . ..+...+.+++..+.+.||||||+++|..++..+++.+|++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~--~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~i 80 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI--E-DSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGF 80 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCch--h-hEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEE
Confidence 35799999999999999999999887654433322 2 12334445677778899999999999999999999999999
Q ss_pred EEEEEecCCCChhh-HHHHHHH----HhcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 570 VIVVAADDGIRPQT-NEAIAHA----KAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~~a----k~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
|+|||+++....+. .+++..+ ...++|+|+|+||+|+... ...........+ .++++++||++
T Consensus 81 ilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~---------~~~~~e~Sak~ 151 (189)
T PTZ00369 81 LCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSF---------GIPFLETSAKQ 151 (189)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHh---------CCEEEEeeCCC
Confidence 99999997533222 1222222 2237899999999998542 222222222221 25799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|.||+++|++|+...
T Consensus 152 ~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 152 RVNVDEAFYELVREI 166 (189)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998643
No 79
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.85 E-value=2.4e-20 Score=181.22 Aligned_cols=153 Identities=22% Similarity=0.268 Sum_probs=113.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+|+|..|+|||||+++|....+...+.+ |.. ..+...+.+++..+.+.||||||++.|..++..++..+|++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~--t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~i 78 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDP--TIE-DAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFI 78 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCC--ccc-ceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEE
Confidence 46899999999999999999998877543333 322 123334556777789999999999999999999999999999
Q ss_pred EEEEecCCCChhhHH----HHHHHH-hcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 571 IVVAADDGIRPQTNE----AIAHAK-AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 571 LVVDasdgi~~qt~E----iL~~ak-~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|||+++....+... .+.... ..++|+|+|+||+|+... ..++........ +++|++|||++|
T Consensus 79 lv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~---------~~~~~e~Sa~~~ 149 (172)
T cd04141 79 ICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF---------NCPFFETSAALR 149 (172)
T ss_pred EEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh---------CCEEEEEecCCC
Confidence 999999865544432 233222 246899999999998542 122222211121 368999999999
Q ss_pred CCHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLV 655 (732)
Q Consensus 643 eGIdeLfe~Ii~l 655 (732)
.||+++|++|+..
T Consensus 150 ~~v~~~f~~l~~~ 162 (172)
T cd04141 150 HYIDDAFHGLVRE 162 (172)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999853
No 80
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.84 E-value=2.7e-20 Score=175.90 Aligned_cols=152 Identities=18% Similarity=0.158 Sum_probs=113.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|++|+|||||+++|+...+.....+..+.+ +....+.+++..+.+.||||||++.|..++..+++.+|++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVE--FGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee--EEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999888765555444433 333444456777889999999999999888888999999999
Q ss_pred EEEecCCCChhhH-HH---HHHHHhcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRPQTN-EA---IAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~qt~-Ei---L~~ak~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|||+++....+.. ++ +..+...++|+++|+||+|+... ..++........ .+.++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~ 149 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQEN---------GLLFLETSALTGEN 149 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHc---------CCEEEEEECCCCCC
Confidence 9999985433322 22 22333457899999999998542 222333333222 25799999999999
Q ss_pred HHHHHHHHHH
Q 004746 645 VDDLLETIML 654 (732)
Q Consensus 645 IdeLfe~Ii~ 654 (732)
|+++|++|..
T Consensus 150 i~~~~~~~~~ 159 (161)
T cd04113 150 VEEAFLKCAR 159 (161)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 81
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.84 E-value=3.2e-20 Score=176.63 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=112.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|.+|+|||||+++|....+...+.+.++.+ ++...+.+++..+.+.||||||++.|..++..+++.+|++|+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVD--FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 689999999999999999999887765555544433 333344456777889999999999999988888999999999
Q ss_pred EEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCC---hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~a~---~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|||+++...... .+++..+.. .+.|+|+|+||+|+.... .++........ .++++++||++|+|
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~ 151 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADEL---------GIPFLETSAKNATN 151 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHc---------CCeEEEEECCCCcC
Confidence 999987432221 223333322 368999999999985432 22222222221 35799999999999
Q ss_pred HHHHHHHHHHHH
Q 004746 645 VDDLLETIMLVA 656 (732)
Q Consensus 645 IdeLfe~Ii~la 656 (732)
++++|++|....
T Consensus 152 v~~~~~~i~~~~ 163 (166)
T cd01869 152 VEQAFMTMAREI 163 (166)
T ss_pred HHHHHHHHHHHH
Confidence 999999998643
No 82
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.84 E-value=3.8e-20 Score=176.85 Aligned_cols=153 Identities=16% Similarity=0.237 Sum_probs=109.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+++|++|+|||||+++|+...+...+.+.+ . ..+...+..+...+.+.||||||++.|..++..++..+|++|+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~--~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 78 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--E-DTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcc--h-heEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEE
Confidence 689999999999999999999887754443322 2 2233333445667889999999999999888888899999999
Q ss_pred EEEecCCCChhh-HHHHHHHHh------cCCCEEEEEeCCCCCCC-Ch-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 572 VVAADDGIRPQT-NEAIAHAKA------AGVPIVIAINKIDKDGA-NP-ERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 572 VVDasdgi~~qt-~EiL~~ak~------~~vPIIVViNKiDL~~a-~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|||+++...... ..++..++. .++|+|+|+||+|+... .. ......+.. .+ .+.+++|||++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~e~SA~~g 150 (165)
T cd04140 79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACAT------EW--NCAFMETSAKTN 150 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHH------Hh--CCcEEEeecCCC
Confidence 999997543322 222222222 46899999999999542 11 111111111 11 357999999999
Q ss_pred CCHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLV 655 (732)
Q Consensus 643 eGIdeLfe~Ii~l 655 (732)
+||+++|++|+.+
T Consensus 151 ~~v~~~f~~l~~~ 163 (165)
T cd04140 151 HNVQELFQELLNL 163 (165)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999999854
No 83
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.84 E-value=3.4e-20 Score=177.08 Aligned_cols=154 Identities=25% Similarity=0.278 Sum_probs=113.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+++|++|+|||||+++|+...+.....+ |.+..++...+.+++..+.+.||||||++.|..++..+++.+|++|
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFH--TIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCC--ceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 46899999999999999999998877654444 3334444445556788889999999999999999999999999999
Q ss_pred EEEEecCCCChhhH-----HHHHHHH---hcCCCEEEEEeCCCCCCC--ChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 571 IVVAADDGIRPQTN-----EAIAHAK---AAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 571 LVVDasdgi~~qt~-----EiL~~ak---~~~vPIIVViNKiDL~~a--~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
+|||+++....+.. +++.+.. ..++|+|+|+||+|+... ..++..+...+.+ ..+++++||+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~e~Sa~ 154 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENG--------DYPYFETSAK 154 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCC--------CCeEEEEECC
Confidence 99999975322222 1222211 135899999999998532 2233333333332 2479999999
Q ss_pred CCCCHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIML 654 (732)
Q Consensus 641 tGeGIdeLfe~Ii~ 654 (732)
+|.|++++|++++.
T Consensus 155 ~~~~v~~~~~~~~~ 168 (170)
T cd04116 155 DATNVAAAFEEAVR 168 (170)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999999875
No 84
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.84 E-value=4.1e-20 Score=182.71 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=113.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+++|+.++|||||+.++....+...+.+ |... .|...+.+++..+.+.||||+|++.|..++..+++.+|++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~--t~~~-~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i 79 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIP--TVFD-NYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI 79 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCC--ceEe-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence 47999999999999999999998887655444 3332 33334456788899999999999999999999999999999
Q ss_pred EEEEecCCCChhhHH--HHHHHH--hcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCC---------CCCCCCCCEEEE
Q 004746 571 IVVAADDGIRPQTNE--AIAHAK--AAGVPIVIAINKIDKDGANPERVMQELSSIGLMP---------EDWGGDIPMVQI 637 (732)
Q Consensus 571 LVVDasdgi~~qt~E--iL~~ak--~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~---------e~~gg~ipiVeV 637 (732)
+|||+++....+... ++..+. ..++|+|+|+||+||.+.... ...+...+... ....+.++|+++
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~--~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 157 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADT--LKKLKEQGQAPITPQQGGALAKQIHAVKYLEC 157 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhh--HHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999854433332 222222 247899999999999543110 01111100000 000112579999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 004746 638 SALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 638 SAKtGeGIdeLfe~Ii~la 656 (732)
||++|+||+++|++|+...
T Consensus 158 SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 158 SALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998654
No 85
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.84 E-value=1.4e-20 Score=202.08 Aligned_cols=241 Identities=26% Similarity=0.367 Sum_probs=180.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccc--------------cCCceeeeeeEEEEeec-----------------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAE--------------AGGITQGIGAYKVQVPV----------------- 537 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse--------------~~GtTrdI~~y~v~i~i----------------- 537 (732)
+....|+.+||+|||||||+..|...+...+. ..|.|.++.+..+-+.-
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 34568999999999999999998754433211 23555555544433311
Q ss_pred --CCcceeEEEEeCCCccccchhhcccc--cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC-ChH
Q 004746 538 --DGKLQPCVFLDTPGHEAFGAMRARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPE 612 (732)
Q Consensus 538 --dgk~i~ItLIDTPGhE~f~~~r~r~~--~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a-~~e 612 (732)
+..+.-+.|+||-|||.|.....+++ +..|..+|++.++++.+..+.|++-.+...++|+|+|++|||+... ...
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~ 274 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQ 274 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHHHH
Confidence 11124588999999999988888887 8899999999999999999999999999999999999999999543 222
Q ss_pred HHHHHHH----HcCCCC---C------------CCC-CCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccce
Q 004746 613 RVMQELS----SIGLMP---E------------DWG-GDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGT 672 (732)
Q Consensus 613 rv~~eL~----elgl~~---e------------~~g-g~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~ 672 (732)
.+.+++. ..+..+ . ..+ +-+|+|.+|+.+|+|++-|.+.+.++-.-. ...-..++.-+
T Consensus 275 ~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~rr--~~~d~g~flmY 352 (527)
T COG5258 275 GVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPKRR--RWDDEGPFLMY 352 (527)
T ss_pred HHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCCccc--ccCCCCCeEEE
Confidence 2222222 111111 0 111 247999999999999998877766432111 22345667888
Q ss_pred EEEEeeccCCCceEEEEEEeeEEecCCEEEEcCe------eEEEEEEEcCCCCccceecCCCCeeC
Q 004746 673 VIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA------FGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 673 Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~------~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
|.+++...|.|+|+.|.|++|.|+.||.+++|+. ..+|++|+.+ ..++++|.||..+.|
T Consensus 353 Id~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh-~~rvdsa~aG~iig~ 417 (527)
T COG5258 353 IDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMH-HYRVDSAKAGSIIGI 417 (527)
T ss_pred EEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEe-eEEeccccCCcEEEE
Confidence 9999999999999999999999999999999874 3689999998 479999999987754
No 86
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.84 E-value=4.3e-20 Score=180.18 Aligned_cols=159 Identities=17% Similarity=0.204 Sum_probs=111.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|..|+|||||+++|....+...+.+.+ .. .+...+.+++..+.+.||||+|++.|..++..+++.+|++||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~--~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~il 78 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--FD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 78 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce--ee-eeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEE
Confidence 589999999999999999999888765444433 22 233344566777899999999999999998889999999999
Q ss_pred EEEecCCCChhhH--HHHHHHH--hcCCCEEEEEeCCCCCCCChHHHHHHHHHcC--CC-------CCCCCCCCCEEEEe
Q 004746 572 VVAADDGIRPQTN--EAIAHAK--AAGVPIVIAINKIDKDGANPERVMQELSSIG--LM-------PEDWGGDIPMVQIS 638 (732)
Q Consensus 572 VVDasdgi~~qt~--EiL~~ak--~~~vPIIVViNKiDL~~a~~erv~~eL~elg--l~-------~e~~gg~ipiVeVS 638 (732)
|||+++....+.. .++..+. ..++|+|+|+||+|+.... ...+.+.... .. .....+.+.|++||
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~--~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~S 156 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP--STIEKLAKNKQKPITPETGEKLARDLKAVKYVECS 156 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh--hhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEec
Confidence 9999985443332 1333332 2368999999999985421 1111111100 00 00001235799999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 004746 639 ALKGEKVDDLLETIMLV 655 (732)
Q Consensus 639 AKtGeGIdeLfe~Ii~l 655 (732)
|++|.||+++|+.++..
T Consensus 157 A~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 157 ALTQKGLKNVFDEAILA 173 (175)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999874
No 87
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.84 E-value=2.4e-20 Score=179.89 Aligned_cols=155 Identities=21% Similarity=0.256 Sum_probs=107.7
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
....++|+++|++|+|||||+++|.+..+. ... .|.++....+.+ + .+.+.||||||++.|..++..++..+|
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~--~t~g~~~~~~~~--~--~~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID-TIS--PTLGFQIKTLEY--E--GYKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC-CcC--CccccceEEEEE--C--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 345689999999999999999999976442 111 233333333332 3 478999999999999888888899999
Q ss_pred eEEEEEEecCCCChh-h----HHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 568 IAVIVVAADDGIRPQ-T----NEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 568 iVILVVDasdgi~~q-t----~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
++++|||+++..... . .+++......++|+++|+||+|+.... .+++...+..... ....++++++||++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~ 159 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKI----SSHHWRIQPCSAVT 159 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCcccc----CCCceEEEeccCCC
Confidence 999999998752211 1 122222223578999999999996543 2332222211110 11246899999999
Q ss_pred CCCHHHHHHHHH
Q 004746 642 GEKVDDLLETIM 653 (732)
Q Consensus 642 GeGIdeLfe~Ii 653 (732)
|.||+++|++|.
T Consensus 160 g~gi~~l~~~l~ 171 (173)
T cd04154 160 GEGLLQGIDWLV 171 (173)
T ss_pred CcCHHHHHHHHh
Confidence 999999999986
No 88
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.84 E-value=1.1e-20 Score=186.42 Aligned_cols=157 Identities=34% Similarity=0.437 Sum_probs=114.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc--CCccccc--------------cCCceeeeeeEEEEeecCCcceeEEEEeCCCccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK--TKVAAAE--------------AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~--~k~~vse--------------~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~ 554 (732)
..+|+|+|++|+|||||+++|+. ..+.... ..|+|.+. ....+..+.+.++||||||++.
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~----~~~~~~~~~~~~~l~DtpG~~~ 77 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILA----KNTAVTYKDTKINIVDTPGHAD 77 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhccccccc----ceeEEEECCEEEEEEECCCcHH
Confidence 35899999999999999999996 3332211 13344332 2222344567899999999999
Q ss_pred cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHH----cCCCCCCCCC
Q 004746 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS----IGLMPEDWGG 630 (732)
Q Consensus 555 f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~e----lgl~~e~~gg 630 (732)
|..++..+++.+|++|+|||++++...++..++..+...++|+++|+||+|+..........++.. ++..... .
T Consensus 78 ~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 155 (194)
T cd01891 78 FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQ--L 155 (194)
T ss_pred HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcccc--C
Confidence 999999999999999999999988777777777777777899999999999976554443333322 2222111 2
Q ss_pred CCCEEEEecCCCCCHHHHHHHHH
Q 004746 631 DIPMVQISALKGEKVDDLLETIM 653 (732)
Q Consensus 631 ~ipiVeVSAKtGeGIdeLfe~Ii 653 (732)
+++++++||++|.|++++.++..
T Consensus 156 ~~~iv~~Sa~~g~~~~~~~~~~~ 178 (194)
T cd01891 156 DFPVLYASAKNGWASLNLEDPSE 178 (194)
T ss_pred ccCEEEeehhccccccccccchh
Confidence 46899999999998876654433
No 89
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.84 E-value=5.1e-20 Score=176.22 Aligned_cols=152 Identities=24% Similarity=0.295 Sum_probs=109.3
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEEE
Q 004746 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVV 573 (732)
Q Consensus 494 VaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVV 573 (732)
|+|+|++|+|||||+++|....+...+.+.+. ..+...+.+++..+.+.||||||++.|..++..++..+|++||||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 77 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVF---ENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICF 77 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEE---eeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEE
Confidence 68999999999999999998887654444322 223334455777788999999999999999888899999999999
Q ss_pred EecCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCCC---------------hHHHHHHHHHcCCCCCCCCCCCCE
Q 004746 574 AADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGAN---------------PERVMQELSSIGLMPEDWGGDIPM 634 (732)
Q Consensus 574 Dasdgi~~qt~--EiL~~ak~--~~vPIIVViNKiDL~~a~---------------~erv~~eL~elgl~~e~~gg~ipi 634 (732)
|+++....+.. .++..+.. .++|+|+|+||+|+.... .++..+....+ +...+
T Consensus 78 d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~~ 149 (174)
T smart00174 78 SVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI--------GAVKY 149 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc--------CCcEE
Confidence 99874333222 12333332 378999999999985411 11111111111 12479
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q 004746 635 VQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~la 656 (732)
++|||++|.||+++|+.|+...
T Consensus 150 ~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 150 LECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998653
No 90
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.84 E-value=3.1e-20 Score=175.87 Aligned_cols=152 Identities=20% Similarity=0.260 Sum_probs=110.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|.+|+|||||++++....+.....+ +.. ..+...+.+++..+.+.||||||++.|..++..++..+|++|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~-t~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 78 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDP-TIE--DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIV 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-chh--heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEE
Confidence 5899999999999999999998877644433 222 3344455567777789999999999999999999999999999
Q ss_pred EEEecCCCChh-hHHHHHHHHh----cCCCEEEEEeCCCCCCCCh--HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRPQ-TNEAIAHAKA----AGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~q-t~EiL~~ak~----~~vPIIVViNKiDL~~a~~--erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|||+++....+ ..+++..+.. .++|+++|+||+|+..... ......+... + .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~------~--~~~~~~~Sa~~~~~ 150 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEE------W--GCPFMETSAKSKTM 150 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHH------h--CCEEEEecCCCCCC
Confidence 99999743222 2233333322 4789999999999853211 1112222211 1 25799999999999
Q ss_pred HHHHHHHHHH
Q 004746 645 VDDLLETIML 654 (732)
Q Consensus 645 IdeLfe~Ii~ 654 (732)
++++|++|..
T Consensus 151 v~~l~~~l~~ 160 (163)
T cd04176 151 VNELFAEIVR 160 (163)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 91
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.6e-20 Score=184.96 Aligned_cols=159 Identities=21% Similarity=0.230 Sum_probs=125.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.+||+++|..+||||||+-++....|.....+ |++..++...+.++...+++.||||+|+|+|..+...||+.|++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~--TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~A 80 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEP--TIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANA 80 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCcccccccc--ccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcE
Confidence 3567999999999999999999999988765444 67777788888888888999999999999999999999999999
Q ss_pred EEEEEEecCCCChh-hHHHHHHHHhcCCC---EEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 569 AVIVVAADDGIRPQ-TNEAIAHAKAAGVP---IVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 569 VILVVDasdgi~~q-t~EiL~~ak~~~vP---IIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+|+|||+++.-..+ ...++..++...-| |.+|+||+||.. ...++........+ ..|+++||||
T Consensus 81 AivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~g---------ll~~ETSAKT 151 (200)
T KOG0092|consen 81 AIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQG---------LLFFETSAKT 151 (200)
T ss_pred EEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcC---------CEEEEEeccc
Confidence 99999999854333 34555666543334 567999999965 23333433344433 5799999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 004746 642 GEKVDDLLETIMLVAEL 658 (732)
Q Consensus 642 GeGIdeLfe~Ii~lael 658 (732)
|.||+++|..|......
T Consensus 152 g~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 152 GENVNEIFQAIAEKLPC 168 (200)
T ss_pred ccCHHHHHHHHHHhccC
Confidence 99999999999875543
No 92
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.84 E-value=8.1e-20 Score=173.47 Aligned_cols=155 Identities=26% Similarity=0.302 Sum_probs=112.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|++|+|||||+++|.+..+.....+.++.+ +....+.+.+..+.+.||||||++.|..++..+++.+|++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVL 78 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceE--EEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEE
Confidence 489999999999999999999887765444333322 333344456677889999999999999999899999999999
Q ss_pred EEEecCCCChhhHH-HHH----HHH---hcCCCEEEEEeCCCCCC--C-ChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 572 VVAADDGIRPQTNE-AIA----HAK---AAGVPIVIAINKIDKDG--A-NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 572 VVDasdgi~~qt~E-iL~----~ak---~~~vPIIVViNKiDL~~--a-~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
|||+++....+... +.. .+. ..++|+++|+||+|+.. . ..+.....+...+ .++++++||+
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~ 150 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNG--------NIPYFETSAK 150 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcC--------CceEEEEECC
Confidence 99998754322221 111 111 12689999999999963 1 2333333333322 3579999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLVA 656 (732)
Q Consensus 641 tGeGIdeLfe~Ii~la 656 (732)
+|.|+++++++|....
T Consensus 151 ~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 151 EAINVEQAFETIARKA 166 (172)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998653
No 93
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.84 E-value=5.5e-20 Score=181.86 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=114.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
..++|+++|+.++|||||+.+|....+...+.+ |... .|...+.+++..+.+.||||+|++.|..++..+++.+|++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~p--T~~~-~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVP--TVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCC--ceee-eeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 346899999999999999999998887654444 3322 3344556678889999999999999999999999999999
Q ss_pred EEEEEecCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCC---------------ChHHHHHHHHHcCCCCCCCCC
Q 004746 570 VIVVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGA---------------NPERVMQELSSIGLMPEDWGG 630 (732)
Q Consensus 570 ILVVDasdgi~~qt~--EiL~~ak~--~~vPIIVViNKiDL~~a---------------~~erv~~eL~elgl~~e~~gg 630 (732)
|||||+++....+.. .++..++. .+.|+|+|+||+||... ..++..+...+++
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~-------- 152 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG-------- 152 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC--------
Confidence 999999986444332 23333332 36899999999998531 1112222222222
Q ss_pred CCCEEEEecCCCCC-HHHHHHHHHHH
Q 004746 631 DIPMVQISALKGEK-VDDLLETIMLV 655 (732)
Q Consensus 631 ~ipiVeVSAKtGeG-IdeLfe~Ii~l 655 (732)
.++|++|||++|+| |+++|+.+++.
T Consensus 153 ~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 153 AATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 14799999999998 99999998874
No 94
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.84 E-value=6.3e-20 Score=182.79 Aligned_cols=156 Identities=15% Similarity=0.177 Sum_probs=116.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
..++|+|+|..++|||||+.+|....+...+.+.++ ..++...+.+++..+.+.||||+|++.|..++..+++.+|++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~--~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMG--IDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcce--eEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 457999999999999999999998776544444333 334445555677789999999999999999999899999999
Q ss_pred EEEEEecCCCChhhH-HHHHHHH--hcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 570 VIVVAADDGIRPQTN-EAIAHAK--AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 570 ILVVDasdgi~~qt~-EiL~~ak--~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
|||||+++....+.. .++..+. ..++|+|||+||+|+... ..++........ .++|++|||++|.
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~---------~~~~~e~SAk~g~ 153 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERN---------GMTFFEVSPLCNF 153 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHc---------CCEEEEecCCCCC
Confidence 999999975433322 2333332 247899999999999542 222222222222 3579999999999
Q ss_pred CHHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLVA 656 (732)
Q Consensus 644 GIdeLfe~Ii~la 656 (732)
||+++|++|....
T Consensus 154 ~V~~~F~~l~~~i 166 (189)
T cd04121 154 NITESFTELARIV 166 (189)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998644
No 95
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=7.1e-20 Score=180.32 Aligned_cols=156 Identities=21% Similarity=0.230 Sum_probs=112.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcccc-ccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAA-EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vs-e~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
++|+|+|.+|+|||||+++|....+... ..+ |....+....+.+++..+.+.||||||++.|..++..+++.+|++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i 78 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIA--TVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALL 78 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCC--cccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEE
Confidence 4799999999999999999998877543 233 3333333334456777789999999999999888888899999999
Q ss_pred EEEEecCCCChh-hHHHHHHHH---hcCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 571 IVVAADDGIRPQ-TNEAIAHAK---AAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 571 LVVDasdgi~~q-t~EiL~~ak---~~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
+|||+++....+ ...++..+. ..++|+|+|+||+|+.... .......+... + .++++++||++|.|
T Consensus 79 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~------~--~~~~~e~Sa~~~~~ 150 (191)
T cd04112 79 LLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKE------Y--GVPFMETSAKTGLN 150 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHH------c--CCeEEEEeCCCCCC
Confidence 999998743322 122233332 2368999999999985321 11222222221 1 25799999999999
Q ss_pred HHHHHHHHHHHHh
Q 004746 645 VDDLLETIMLVAE 657 (732)
Q Consensus 645 IdeLfe~Ii~lae 657 (732)
+++||++|.....
T Consensus 151 v~~l~~~l~~~~~ 163 (191)
T cd04112 151 VELAFTAVAKELK 163 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 96
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.84 E-value=6.4e-20 Score=172.70 Aligned_cols=153 Identities=19% Similarity=0.211 Sum_probs=113.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
.+|+++|++|+|||||+++|++.++...+.++++.++....+ .+++..+.+.||||||++.|..++..+++.+|++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~ 78 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTM--YLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEE--EECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 379999999999999999999988877777766665544444 345666789999999999999988889999999999
Q ss_pred EEEecCCCChhh-HHHHHHHH-hc--CCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 572 VVAADDGIRPQT-NEAIAHAK-AA--GVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 572 VVDasdgi~~qt-~EiL~~ak-~~--~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
|+|+++....+. ..++..+. .. +.|+++|+||+|+.... ..+....+... ..++++++||++|.|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~~~v 150 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE--------LNAMFIETSAKAGHNV 150 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHH--------hCCEEEEEeCCCCCCH
Confidence 999987543322 23333332 22 48999999999994321 22222222221 1267999999999999
Q ss_pred HHHHHHHHH
Q 004746 646 DDLLETIML 654 (732)
Q Consensus 646 deLfe~Ii~ 654 (732)
++++++|..
T Consensus 151 ~~l~~~i~~ 159 (161)
T cd01861 151 KELFRKIAS 159 (161)
T ss_pred HHHHHHHHH
Confidence 999999875
No 97
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.84 E-value=4.9e-20 Score=180.56 Aligned_cols=161 Identities=23% Similarity=0.309 Sum_probs=112.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeec-CCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~i-dgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
..++|+++|++|+|||||+++|....+... .+ |.++..+.+.+.. ++..+.+.||||||++.|..++..+++.+|+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~--t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 78 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VP--TKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDG 78 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CC--ccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCE
Confidence 357899999999999999999998766532 22 3344444444433 3466889999999999999988888999999
Q ss_pred EEEEEEecCCCChhh-----HHHHHHHHhcCCCEEEEEeCCCCCCC-ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIRPQT-----NEAIAHAKAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~~qt-----~EiL~~ak~~~vPIIVViNKiDL~~a-~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|+|||+++...... .++.......++|+++|+||+|+... ..+.. ..+........ ...+++++|||++|
T Consensus 79 ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~SA~~~ 155 (183)
T cd04152 79 IVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEV-EKLLALHELSA--STPWHVQPACAIIG 155 (183)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHH-HHHhCccccCC--CCceEEEEeecccC
Confidence 999999987422111 12222233357899999999998643 22332 22222111100 11256899999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
+||++++++|....
T Consensus 156 ~gi~~l~~~l~~~l 169 (183)
T cd04152 156 EGLQEGLEKLYEMI 169 (183)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
No 98
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.84 E-value=5.6e-20 Score=174.44 Aligned_cols=154 Identities=18% Similarity=0.256 Sum_probs=112.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|.+|+|||||+++|....+.....+.++.+ +....+..++..+.+.||||||++.|..++..+++.+|++|+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVE--FATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceE--EEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 689999999999999999999888765555544433 344444556767789999999999999988888999999999
Q ss_pred EEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 572 VVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 572 VVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
|+|+++....+. .+++..+.. .++|+++|+||+|+.... ..+....+... + .++++++||++|.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~------~--~~~~~~~Sa~~~~~v 153 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK------N--GLSFIETSALDGTNV 153 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHH------c--CCEEEEEECCCCCCH
Confidence 999986433222 223333322 358999999999986421 11222222221 1 357999999999999
Q ss_pred HHHHHHHHHH
Q 004746 646 DDLLETIMLV 655 (732)
Q Consensus 646 deLfe~Ii~l 655 (732)
+++|++|+..
T Consensus 154 ~~l~~~l~~~ 163 (165)
T cd01868 154 EEAFKQLLTE 163 (165)
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 99
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.84 E-value=6.6e-20 Score=180.51 Aligned_cols=162 Identities=22% Similarity=0.262 Sum_probs=112.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
.+|+|+|+.|+|||||+++|....+...+.+.+. .. |...+.+++..+.+.||||+|++.|..++..++..+|++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~--~~-~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~il 77 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVF--EN-YVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIML 77 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcce--ee-eEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEE
Confidence 3799999999999999999998877654443222 22 22334456677899999999999999998889999999999
Q ss_pred EEEecCCCChhhHH--HHHHHHh--cCCCEEEEEeCCCCCCCChHH-HHHHHH------HcCCCCCCCCCCCCEEEEecC
Q 004746 572 VVAADDGIRPQTNE--AIAHAKA--AGVPIVIAINKIDKDGANPER-VMQELS------SIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 572 VVDasdgi~~qt~E--iL~~ak~--~~vPIIVViNKiDL~~a~~er-v~~eL~------elgl~~e~~gg~ipiVeVSAK 640 (732)
|||+++....+..+ ++..+.. .+.|+|+|+||+|+....... ....+. +.+.......+.++|++|||+
T Consensus 78 v~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 157 (189)
T cd04134 78 CFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence 99999864443332 3333332 378999999999996532211 100000 000000001123679999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLVA 656 (732)
Q Consensus 641 tGeGIdeLfe~Ii~la 656 (732)
+|.||+++|++|....
T Consensus 158 ~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 158 LNRGVNEAFTEAARVA 173 (189)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999998765
No 100
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.84 E-value=3.3e-20 Score=201.64 Aligned_cols=217 Identities=24% Similarity=0.261 Sum_probs=137.8
Q ss_pred chHHHHHHHhcCCHHHHHHHHHhCCCcccccccCCHHH-HHHhhhhcCCeeeecCchhhHHHhhhccccChhhhhcccC-
Q 004746 412 MLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDM-VKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLED- 489 (732)
Q Consensus 412 iav~qLag~Ls~~i~eiik~L~~lG~~~~in~~Ld~e~-ie~ia~e~~~~~i~~~~~~ieell~~~~~~~e~~~~~l~~- 489 (732)
+++++|.+.|+..+..... |..++..+.. ..+.|+ ++ +........+......++++. .....+...+
T Consensus 116 v~la~l~~~l~r~~~~~~~-l~~~~~~i~~--~g~gE~~~~-~~~~~i~~ri~~l~~~L~~~~------~~~~~~r~~r~ 185 (351)
T TIGR03156 116 VELAQLKYLLPRLVGGWTH-LSRQGGGIGT--RGPGETQLE-TDRRLIRERIAQLKKELEKVE------KQRERQRRRRK 185 (351)
T ss_pred HHHHhccchhhhhhhhHHH-HHhhcCCCCC--CCCChhHHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhc
Confidence 6788899999888887776 6655432222 222222 21 111111111111122223222 2222333333
Q ss_pred --CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc---------cccchh
Q 004746 490 --RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH---------EAFGAM 558 (732)
Q Consensus 490 --r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh---------E~f~~~ 558 (732)
..++|+|+|.+|+|||||+|+|++..+.+.+.+++|++.....+.+. + +..+.||||||. +.|...
T Consensus 186 ~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~-~--~~~i~l~DT~G~~~~l~~~lie~f~~t 262 (351)
T TIGR03156 186 RADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP-D--GGEVLLTDTVGFIRDLPHELVAAFRAT 262 (351)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC-C--CceEEEEecCcccccCCHHHHHHHHHH
Confidence 55899999999999999999999988777788889988766655542 2 357999999996 223222
Q ss_pred hcccccccCeEEEEEEecCCCChhhH----HHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCE
Q 004746 559 RARGARVTDIAVIVVAADDGIRPQTN----EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPM 634 (732)
Q Consensus 559 r~r~~~~ADiVILVVDasdgi~~qt~----EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipi 634 (732)
+ ..+..+|++|+|+|+++....+.. +++..+...++|+|+|+||+|+... ..+ ..+.. ...++
T Consensus 263 l-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--~~v-~~~~~---------~~~~~ 329 (351)
T TIGR03156 263 L-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--PRI-ERLEE---------GYPEA 329 (351)
T ss_pred H-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--HhH-HHHHh---------CCCCE
Confidence 2 246889999999999986544332 2333333347899999999998542 121 11111 11368
Q ss_pred EEEecCCCCCHHHHHHHHHH
Q 004746 635 VQISALKGEKVDDLLETIML 654 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~ 654 (732)
++|||++|.||++|+++|..
T Consensus 330 i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 330 VFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred EEEEccCCCCHHHHHHHHHh
Confidence 99999999999999999864
No 101
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.84 E-value=2e-20 Score=184.76 Aligned_cols=159 Identities=27% Similarity=0.323 Sum_probs=128.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
+...+|.|+|++|||||||+|++...+|...+.. |++..+.+.++.++++.+.+.||||+|+|+|..+...+++.+|+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qyka--TIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKA--TIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhcc--ccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 3457999999999999999999999888755443 77777888888889999999999999999999999999999999
Q ss_pred EEEEEEecCCC-----ChhhHHHHHHHHh---cCCCEEEEEeCCCCCCC-----ChHHHHHHHHHcCCCCCCCCCCCCEE
Q 004746 569 AVIVVAADDGI-----RPQTNEAIAHAKA---AGVPIVIAINKIDKDGA-----NPERVMQELSSIGLMPEDWGGDIPMV 635 (732)
Q Consensus 569 VILVVDasdgi-----~~qt~EiL~~ak~---~~vPIIVViNKiDL~~a-----~~erv~~eL~elgl~~e~~gg~ipiV 635 (732)
++||||+++.- ..|-.|.+.++.. ...|+||++||+|+.+. ...+..+..... +++|||
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~--------gnipyf 156 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK--------GNIPYF 156 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc--------CCceeE
Confidence 99999999743 3344455555532 35689999999999652 233444444443 478999
Q ss_pred EEecCCCCCHHHHHHHHHHHHh
Q 004746 636 QISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 636 eVSAKtGeGIdeLfe~Ii~lae 657 (732)
++|||.+.||++.|+.+...+.
T Consensus 157 EtSAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 157 ETSAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred EecccccccHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 102
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.84 E-value=1.1e-19 Score=176.85 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=111.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecC-CcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-GKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~id-gk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
++|+|+|++|+|||||+++|.+..+...+.+.+..+ +. ..+... +..+.+.||||||++.|..++..++..+|++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~--~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 77 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFEN--YV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLL 77 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeee--eE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEE
Confidence 489999999999999999999888765544432222 22 223333 66788999999999999999888999999999
Q ss_pred EEEEecCCCChhhHH--HHHHHH--hcCCCEEEEEeCCCCCCCC-------hHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 571 IVVAADDGIRPQTNE--AIAHAK--AAGVPIVIAINKIDKDGAN-------PERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 571 LVVDasdgi~~qt~E--iL~~ak--~~~vPIIVViNKiDL~~a~-------~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
+|||+++....+... ++.... ..++|+|+|+||+|+.... .++..+.....+ ..+++++||
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~--------~~~~~e~Sa 149 (187)
T cd04132 78 ICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG--------AFAYLECSA 149 (187)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC--------CcEEEEccC
Confidence 999999754433321 222222 2468999999999985422 222222222222 127999999
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q 004746 640 LKGEKVDDLLETIMLVAEL 658 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~lael 658 (732)
++|.||+++|+.|...+..
T Consensus 150 ~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 150 KTMENVEEVFDTAIEEALK 168 (187)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999876543
No 103
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.83 E-value=6.8e-20 Score=176.59 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=110.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecC----------CcceeEEEEeCCCccccchhhc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD----------GKLQPCVFLDTPGHEAFGAMRA 560 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~id----------gk~i~ItLIDTPGhE~f~~~r~ 560 (732)
.++|+++|.+|+|||||+++|....+.....+ |....++...+.+. +..+.+.||||||++.|..++.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFIT--TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCC--ccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 47899999999999999999998877654444 33333333323222 4567899999999999999999
Q ss_pred ccccccCeEEEEEEecCCCChhhH-HHHHHHHh----cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCC
Q 004746 561 RGARVTDIAVIVVAADDGIRPQTN-EAIAHAKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDI 632 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt~-EiL~~ak~----~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~i 632 (732)
.+++.+|++|+|||+++....+.. .++..+.. .+.|+++|+||+|+... ..++..+..... .+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~ 152 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKY---------GI 152 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHc---------CC
Confidence 999999999999999874332222 22222322 36789999999998542 222332222222 25
Q ss_pred CEEEEecCCCCCHHHHHHHHHHH
Q 004746 633 PMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 633 piVeVSAKtGeGIdeLfe~Ii~l 655 (732)
+++++||++|.|++++|++|...
T Consensus 153 ~~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 153 PYFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 79999999999999999999853
No 104
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.83 E-value=8.8e-20 Score=175.12 Aligned_cols=154 Identities=18% Similarity=0.142 Sum_probs=113.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|++|||||||+++|+...+...+.+.++.+ +....+.+++....+.||||||++.|..++..+++.+|++||
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE--FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcccee--EEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 689999999999999999999887765544433333 333344456777789999999999999988888999999999
Q ss_pred EEEecCCCChhhH-HHHHHHHh---cCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~qt~-EiL~~ak~---~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|+|+++....+.. .++..++. .++|+|+|+||+|+.. ...++........ ...++++||++|.|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~ 153 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEH---------GLIFMETSAKTASN 153 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCCC
Confidence 9999874333222 23333332 4689999999999863 2233333333222 25699999999999
Q ss_pred HHHHHHHHHHHH
Q 004746 645 VDDLLETIMLVA 656 (732)
Q Consensus 645 IdeLfe~Ii~la 656 (732)
|+++|+++....
T Consensus 154 i~~~~~~~~~~~ 165 (168)
T cd01866 154 VEEAFINTAKEI 165 (168)
T ss_pred HHHHHHHHHHHH
Confidence 999999987643
No 105
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=8.7e-20 Score=179.33 Aligned_cols=153 Identities=17% Similarity=0.185 Sum_probs=112.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
.+|+++|+.++|||||+++|....+...+.+.+ .. .|...+.+++..+.+.||||+|++.|..++..+++.+|++||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~--~~-~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~il 78 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTV--FE-NYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLI 78 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCce--EE-EEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEE
Confidence 589999999999999999999887765544432 22 234455567888999999999999999999999999999999
Q ss_pred EEEecCCCChhh--HHHHHHHHh--cCCCEEEEEeCCCCCCC---------------ChHHHHHHHHHcCCCCCCCCCCC
Q 004746 572 VVAADDGIRPQT--NEAIAHAKA--AGVPIVIAINKIDKDGA---------------NPERVMQELSSIGLMPEDWGGDI 632 (732)
Q Consensus 572 VVDasdgi~~qt--~EiL~~ak~--~~vPIIVViNKiDL~~a---------------~~erv~~eL~elgl~~e~~gg~i 632 (732)
|||+++....+. ..++..++. .+.|+|+|+||+||... ..++..+...+++ ..
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~--------~~ 150 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLG--------AE 150 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhC--------CC
Confidence 999998554433 133333332 36899999999998531 1111111111221 13
Q ss_pred CEEEEecCCCCC-HHHHHHHHHHH
Q 004746 633 PMVQISALKGEK-VDDLLETIMLV 655 (732)
Q Consensus 633 piVeVSAKtGeG-IdeLfe~Ii~l 655 (732)
+|++|||++|+| |+++|..+++.
T Consensus 151 ~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred EEEECccCcCCcCHHHHHHHHHHH
Confidence 799999999995 99999998874
No 106
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.83 E-value=9e-20 Score=177.79 Aligned_cols=153 Identities=19% Similarity=0.247 Sum_probs=110.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|..|+|||||+.+++...+...+.+. .. ..+...+.+++..+.+.||||||++.|..++..++..+|++||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t--~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT--VF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 78 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCc--ce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEE
Confidence 58999999999999999999988776544442 22 2344455567778899999999999999998889999999999
Q ss_pred EEEecCCCChhhH--HHHHHHH--hcCCCEEEEEeCCCCCCCCh--HHHH------------HHHHHcCCCCCCCCCCCC
Q 004746 572 VVAADDGIRPQTN--EAIAHAK--AAGVPIVIAINKIDKDGANP--ERVM------------QELSSIGLMPEDWGGDIP 633 (732)
Q Consensus 572 VVDasdgi~~qt~--EiL~~ak--~~~vPIIVViNKiDL~~a~~--erv~------------~eL~elgl~~e~~gg~ip 633 (732)
|||+++....+.. .++..+. ..++|+|+|+||+|+..... +... ..+.. .+ +.++
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~-~~~~ 151 (174)
T cd01871 79 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK------EI-GAVK 151 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHH------Hc-CCcE
Confidence 9999975443332 1233222 23689999999999953211 1110 01111 01 1257
Q ss_pred EEEEecCCCCCHHHHHHHHHH
Q 004746 634 MVQISALKGEKVDDLLETIML 654 (732)
Q Consensus 634 iVeVSAKtGeGIdeLfe~Ii~ 654 (732)
|++|||++|+||+++|+.++.
T Consensus 152 ~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 152 YLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred EEEecccccCCHHHHHHHHHH
Confidence 999999999999999999874
No 107
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.4e-20 Score=186.46 Aligned_cols=158 Identities=20% Similarity=0.150 Sum_probs=126.8
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
..+.++|+++|+++||||+|+.++..+.+..+... |++|++....+.+++..+.+.+|||+|+++|..+...|++.|+
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~s--TiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFIS--TIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccc--eEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 34567999999999999999999999888766554 7788888888888999999999999999999999999999999
Q ss_pred eEEEEEEecCCCChh----hHHHHHHHHhcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 568 IAVIVVAADDGIRPQ----TNEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 568 iVILVVDasdgi~~q----t~EiL~~ak~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
+++||||+++....+ |++.++.....++++|+|+||+|+... ..++-.+...++ .+.|+++||+
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~---------G~~F~EtSAk 157 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREY---------GIKFFETSAK 157 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHh---------CCeEEEcccc
Confidence 999999999743322 344444444558999999999999652 222222223333 3689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLVA 656 (732)
Q Consensus 641 tGeGIdeLfe~Ii~la 656 (732)
+|.||++.|-.|++..
T Consensus 158 ~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 158 TNFNIEEAFLSLARDI 173 (207)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988643
No 108
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.83 E-value=6.3e-20 Score=186.11 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=116.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
...++|+|+|..|+|||||+++++...+...+.+ |.++.++...+..++..+.+.||||+|++.|..++..+++.+|+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~--tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 88 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCC--ccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence 4457999999999999999999998777644433 44455555555556677899999999999999999999999999
Q ss_pred EEEEEEecCCCChhhH-HHHHHHH--hcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 569 AVIVVAADDGIRPQTN-EAIAHAK--AAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 569 VILVVDasdgi~~qt~-EiL~~ak--~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
+|+|||+++....+.. .++..+. ..++|+|+|+||+|+..... .... .+... ..++|++|||++|.|
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~--------~~~~~~e~SAk~~~~ 159 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRK--------KNLQYYEISAKSNYN 159 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHHHh--------cCCEEEEcCCCCCCC
Confidence 9999999985443322 2222222 24689999999999854221 1111 22211 136799999999999
Q ss_pred HHHHHHHHHHHH
Q 004746 645 VDDLLETIMLVA 656 (732)
Q Consensus 645 IdeLfe~Ii~la 656 (732)
|+++|++|+...
T Consensus 160 i~~~f~~l~~~~ 171 (219)
T PLN03071 160 FEKPFLYLARKL 171 (219)
T ss_pred HHHHHHHHHHHH
Confidence 999999998644
No 109
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=9.7e-20 Score=172.98 Aligned_cols=152 Identities=19% Similarity=0.213 Sum_probs=103.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh---------hccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM---------RARG 562 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~---------r~r~ 562 (732)
++|+++|++|+|||||+++|.+..+.....+++|.++....+. ..++.++||||||+...... ....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFD----YKYLRWQVIDTPGLLDRPLEERNTIEMQAITAL 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEc----cCceEEEEEECCCcCCccccCCchHHHHHHHHH
Confidence 5899999999999999999998877655566777665433332 23568999999997432110 0011
Q ss_pred ccccCeEEEEEEecCCCC---hhhHHHHHHHHhc--CCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEE
Q 004746 563 ARVTDIAVIVVAADDGIR---PQTNEAIAHAKAA--GVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQI 637 (732)
Q Consensus 563 ~~~ADiVILVVDasdgi~---~qt~EiL~~ak~~--~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeV 637 (732)
...+|++|+|+|+++... ....+++..++.. +.|+|+|+||+|+...........+... ...+++++
T Consensus 77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~--------~~~~~~~~ 148 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEEL--------EGEEVLKI 148 (168)
T ss_pred HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhh--------ccCceEEE
Confidence 133699999999987432 2223455555444 7899999999998643221111122111 23679999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 004746 638 SALKGEKVDDLLETIMLV 655 (732)
Q Consensus 638 SAKtGeGIdeLfe~Ii~l 655 (732)
||++|.|+++++++|...
T Consensus 149 Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 149 STLTEEGVDEVKNKACEL 166 (168)
T ss_pred EecccCCHHHHHHHHHHH
Confidence 999999999999998753
No 110
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.83 E-value=1.2e-19 Score=170.66 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=113.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|++|+|||||+++|.+..+.....+.++ ..+....+.+++..+.+.||||||++.|..++..++..+|++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~il 78 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIG--VDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALL 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEE
Confidence 4899999999999999999998877554444333 33334444456766789999999999999888889999999999
Q ss_pred EEEecCCCChhhHH-HHHHHHh---cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRPQTNE-AIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~qt~E-iL~~ak~---~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|||+++....+... ++..+.. .++|+++|+||+|+... ..+......... +++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~ 149 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEH---------GLPFFETSAKTNTN 149 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHc---------CCeEEEEeCCCCCC
Confidence 99998744333322 2222222 46899999999998542 223333333222 25699999999999
Q ss_pred HHHHHHHHHHH
Q 004746 645 VDDLLETIMLV 655 (732)
Q Consensus 645 IdeLfe~Ii~l 655 (732)
+++++++|...
T Consensus 150 i~~l~~~i~~~ 160 (164)
T smart00175 150 VEEAFEELARE 160 (164)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 111
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.83 E-value=8.9e-20 Score=179.49 Aligned_cols=152 Identities=24% Similarity=0.248 Sum_probs=109.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILV 572 (732)
+|+|+|.+|+|||||+++|....+.....+.+. ..+...+.+++..+.+.||||||++.|..++..+++.+|++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 77 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIE---DSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILV 77 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchH---hhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEE
Confidence 589999999999999999998777544333222 12233344567777899999999999999999999999999999
Q ss_pred EEecCCCChhh-HHHHHHHHh------cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 573 VAADDGIRPQT-NEAIAHAKA------AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 573 VDasdgi~~qt-~EiL~~ak~------~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
||+++...... .+++..+.. .++|+|+|+||+|+... ...........+ .++++++||++|
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~e~SAk~~ 148 (190)
T cd04144 78 YSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRL---------GCEFIEASAKTN 148 (190)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHh---------CCEEEEecCCCC
Confidence 99987543222 223332321 36899999999998542 112221111111 257999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.||+++|++|+...
T Consensus 149 ~~v~~l~~~l~~~l 162 (190)
T cd04144 149 VNVERAFYTLVRAL 162 (190)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998644
No 112
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.83 E-value=4.5e-20 Score=178.69 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=107.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|....+. ...+ |.++....+. ...+.+.||||||++.|..++..++..+|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~--t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ 79 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIP--TVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 79 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccC--CcccceEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 34679999999999999999999866553 2223 3333332222 245789999999999999888888999999
Q ss_pred EEEEEEecCCCC-hhhHHHHHHH-H---hcCCCEEEEEeCCCCCCC-ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIR-PQTNEAIAHA-K---AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~-~qt~EiL~~a-k---~~~vPIIVViNKiDL~~a-~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|||||+++... ....+.+... . ..++|+++|+||+|+... ..+++...+ ..... ....+.++++||++|
T Consensus 80 ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~-~~~~~---~~~~~~~~~~SAk~g 155 (168)
T cd04149 80 LIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKL-GLTRI---RDRNWYVQPSCATSG 155 (168)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHc-CCCcc---CCCcEEEEEeeCCCC
Confidence 999999997432 2222223222 2 246899999999999653 233333322 11111 112246899999999
Q ss_pred CCHHHHHHHHHH
Q 004746 643 EKVDDLLETIML 654 (732)
Q Consensus 643 eGIdeLfe~Ii~ 654 (732)
.|++++|++|..
T Consensus 156 ~gv~~~~~~l~~ 167 (168)
T cd04149 156 DGLYEGLTWLSS 167 (168)
T ss_pred CChHHHHHHHhc
Confidence 999999999863
No 113
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.83 E-value=4.1e-20 Score=175.36 Aligned_cols=156 Identities=22% Similarity=0.274 Sum_probs=106.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCcc----ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVA----AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~----vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
+|+|+|++|+|||||+++|...... ......+|.++....+.+ + +..+.||||||++.|..++..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV--G--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE--C--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 5899999999999999999754321 111223455554444443 2 5689999999999999988888999999
Q ss_pred EEEEEEecCCCC-hhhHHHHHHH----HhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIR-PQTNEAIAHA----KAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~-~qt~EiL~~a----k~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+++|+|+++... .....++..+ ...++|+|+++||+|+.... ..+....+..... ......++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAE--EIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccc--cccCCceEEEEeeCCCC
Confidence 999999986421 1112222222 23479999999999986543 2333333222110 01112468999999999
Q ss_pred CCHHHHHHHHHH
Q 004746 643 EKVDDLLETIML 654 (732)
Q Consensus 643 eGIdeLfe~Ii~ 654 (732)
+|+++++++|..
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999863
No 114
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.83 E-value=1.3e-19 Score=173.42 Aligned_cols=153 Identities=23% Similarity=0.262 Sum_probs=110.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|++|+|||||+++|....+...+.+.+ . ..+...+.+++..+.+.||||||++.|..++..++..+|++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~-~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 77 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-F--DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-e--eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEE
Confidence 489999999999999999999887754443322 1 2334445567777889999999999999999989999999999
Q ss_pred EEEecCCCChhhH--HHHHHHH--hcCCCEEEEEeCCCCCCCChH---------------HHHHHHHHcCCCCCCCCCCC
Q 004746 572 VVAADDGIRPQTN--EAIAHAK--AAGVPIVIAINKIDKDGANPE---------------RVMQELSSIGLMPEDWGGDI 632 (732)
Q Consensus 572 VVDasdgi~~qt~--EiL~~ak--~~~vPIIVViNKiDL~~a~~e---------------rv~~eL~elgl~~e~~gg~i 632 (732)
|+|+++....+.. .++..+. ..++|+|+|+||+|+.+.... +.......+ +..
T Consensus 78 v~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~ 149 (174)
T cd04135 78 CFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI--------GAH 149 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc--------CCC
Confidence 9999875433322 1222222 357899999999998543211 111111111 224
Q ss_pred CEEEEecCCCCCHHHHHHHHHHH
Q 004746 633 PMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 633 piVeVSAKtGeGIdeLfe~Ii~l 655 (732)
++++|||++|.||+++|+.++..
T Consensus 150 ~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 150 CYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred EEEEecCCcCCCHHHHHHHHHHH
Confidence 69999999999999999998864
No 115
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.83 E-value=6.5e-20 Score=175.61 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=105.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+++|..++|||||+++|....+. ...+ |.+.....+. ...+.+.||||||++.|..++..+++.+|++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~p--t~g~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCC--CCCcceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 47999999999999999999866664 2333 3343333222 245789999999999999999999999999999
Q ss_pred EEEecCCCC-hhhHHHHHHH-H---hcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 572 VVAADDGIR-PQTNEAIAHA-K---AAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 572 VVDasdgi~-~qt~EiL~~a-k---~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
|||+++... .+..+.+..+ . ..+.|+++++||+|+.+... .++...+ ..... ....+.++++||++|+||
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~-~~~~~---~~~~~~~~~~Sak~g~gv 149 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKL-GLHSL---RNRNWYIQATCATSGDGL 149 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHh-Ccccc---CCCCEEEEEeeCCCCCCH
Confidence 999987321 1122222222 1 23589999999999965422 2333332 11111 112346789999999999
Q ss_pred HHHHHHHH
Q 004746 646 DDLLETIM 653 (732)
Q Consensus 646 deLfe~Ii 653 (732)
+++|++|.
T Consensus 150 ~~~~~~l~ 157 (159)
T cd04150 150 YEGLDWLS 157 (159)
T ss_pred HHHHHHHh
Confidence 99999986
No 116
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.83 E-value=1.1e-19 Score=176.30 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=112.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILV 572 (732)
+|+++|+.++|||||+++|+...+...+.+ |....++...+.+++..+.+.||||||++.|..++..+++.+|++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKA--TIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEE
Confidence 799999999999999999999887655544 433444444555677778999999999999999999999999999999
Q ss_pred EEecCCCChh-hHHHHHHHHhc----CCCEEEEEeCCCCCCCCh----HHHHHHH-HHcCCCCCCCCCCCCEEEEecCCC
Q 004746 573 VAADDGIRPQ-TNEAIAHAKAA----GVPIVIAINKIDKDGANP----ERVMQEL-SSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 573 VDasdgi~~q-t~EiL~~ak~~----~vPIIVViNKiDL~~a~~----erv~~eL-~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
||+++..... ..+++..+... ..|+|+|+||+|+..... +.....+ .++ ..+++++||++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~g 150 (170)
T cd04108 80 FDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEM---------QAEYWSVSALSG 150 (170)
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHc---------CCeEEEEECCCC
Confidence 9998732222 22333333222 356999999999854321 1111122 121 257899999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.|++++|+.|+.++
T Consensus 151 ~~v~~lf~~l~~~~ 164 (170)
T cd04108 151 ENVREFFFRVAALT 164 (170)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 117
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.83 E-value=1.1e-19 Score=171.38 Aligned_cols=153 Identities=20% Similarity=0.249 Sum_probs=112.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|++|+|||||+++|++..+.....+ |.+..+....+.+++..+.+.+|||||++.|...+..+++.+|++||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQES--TIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence 6899999999999999999998877653333 33333334444567778899999999999998888888899999999
Q ss_pred EEEecCCCCh-hhHHHHHHHHh---cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRP-QTNEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~-qt~EiL~~ak~---~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|+|+++.... +...++..+.. .++|+|+++||+|+... +.+.........+ +.++++||++|.|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~ 150 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENG---------LLFFETSAKTGEN 150 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcC---------CEEEEEECCCCCC
Confidence 9999864322 22233333333 35789999999998632 2333333333322 5799999999999
Q ss_pred HHHHHHHHHHH
Q 004746 645 VDDLLETIMLV 655 (732)
Q Consensus 645 IdeLfe~Ii~l 655 (732)
++++|++|...
T Consensus 151 v~~l~~~l~~~ 161 (163)
T cd01860 151 VNELFTEIAKK 161 (163)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 118
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.83 E-value=7.6e-20 Score=183.45 Aligned_cols=147 Identities=37% Similarity=0.462 Sum_probs=112.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCc----------------cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKV----------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF 555 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~----------------~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f 555 (732)
++|+++||+|+|||||+++|+.... .....+|+|++..... +..++..++|+|||||..|
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~----~~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVE----YETANRHYAHVDCPGHADY 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeE----ecCCCeEEEEEECcCHHHH
Confidence 6899999999999999999985310 1123567887764333 3345668999999999999
Q ss_pred chhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCC--hH----HHHHHHHHcCCCCCCC
Q 004746 556 GAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN--PE----RVMQELSSIGLMPEDW 628 (732)
Q Consensus 556 ~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~--~e----rv~~eL~elgl~~e~~ 628 (732)
......++..+|++|+|+|+.+++..++.+++..+...++| +|+|+||+|+.... .+ ++...+...++..
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~--- 155 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG--- 155 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc---
Confidence 88888889999999999999999999999999999999998 78999999985311 11 1222333334422
Q ss_pred CCCCCEEEEecCCCCCHH
Q 004746 629 GGDIPMVQISALKGEKVD 646 (732)
Q Consensus 629 gg~ipiVeVSAKtGeGId 646 (732)
.+++++++||++|.|+.
T Consensus 156 -~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 -DNTPIVRGSALKALEGD 172 (195)
T ss_pred -cCCeEEEeeCccccCCC
Confidence 25899999999999863
No 119
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.83 E-value=4.3e-20 Score=173.73 Aligned_cols=152 Identities=18% Similarity=0.243 Sum_probs=103.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
+|+++|.+|+|||||+++|....+ .....+ |.++....+ ....+.+.||||||++.|..++..++..+|++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~--t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 74 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVP--TVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIF 74 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecC--ccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEE
Confidence 489999999999999999997653 222222 333222222 2345789999999999999999999999999999
Q ss_pred EEEecCCCChh-hHHHHHHH------HhcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 572 VVAADDGIRPQ-TNEAIAHA------KAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 572 VVDasdgi~~q-t~EiL~~a------k~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
|+|+++..... ....+..+ ...++|+++|+||+|+..... .++...+ . +.. .....+.++++||++|.
T Consensus 75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l-~--~~~-~~~~~~~~~~~Sa~~g~ 150 (162)
T cd04157 75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLL-G--LEN-IKDKPWHIFASNALTGE 150 (162)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHh-C--Ccc-ccCceEEEEEeeCCCCC
Confidence 99999754321 11122211 124799999999999965432 2222222 1 110 01123468999999999
Q ss_pred CHHHHHHHHHH
Q 004746 644 KVDDLLETIML 654 (732)
Q Consensus 644 GIdeLfe~Ii~ 654 (732)
|++++|++|..
T Consensus 151 gv~~~~~~l~~ 161 (162)
T cd04157 151 GLDEGVQWLQA 161 (162)
T ss_pred chHHHHHHHhc
Confidence 99999999864
No 120
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=5.4e-20 Score=202.48 Aligned_cols=151 Identities=25% Similarity=0.430 Sum_probs=125.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc-----cchh----hcc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-----FGAM----RAR 561 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~-----f~~~----r~r 561 (732)
+.|+|+|+||||||||+|+|++.+.+ +.+.+|+|+|-.+...++ .+..+.++||+|.+. +... ...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~----~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW----LGREFILIDTGGLDDGDEDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE----cCceEEEEECCCCCcCCchHHHHHHHHHHHH
Confidence 78999999999999999999988765 889999999986666554 234699999999653 2222 224
Q ss_pred cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 562 ~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
.+..||++|||+|+..|+++++.++.++++..++|+|+|+||+|-. ..+....++..+|+ -.++++||..
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~--~~e~~~~efyslG~--------g~~~~ISA~H 149 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL--KAEELAYEFYSLGF--------GEPVPISAEH 149 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc--hhhhhHHHHHhcCC--------CCceEeehhh
Confidence 5588999999999999999999999999998889999999999974 34555666667665 3689999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|.|+.+|+++++...
T Consensus 150 g~Gi~dLld~v~~~l 164 (444)
T COG1160 150 GRGIGDLLDAVLELL 164 (444)
T ss_pred ccCHHHHHHHHHhhc
Confidence 999999999999764
No 121
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.83 E-value=1.3e-19 Score=173.28 Aligned_cols=153 Identities=18% Similarity=0.223 Sum_probs=112.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+++|++++|||||+++|....+...+.+ |....++...+.+++..+.+.||||+|++.|..++..+++.+|++++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHIS--TIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFL 78 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEE
Confidence 4799999999999999999998887654444 44444444455566767889999999999999888889999999999
Q ss_pred EEEecCCCChhhH-HHHHHHH---hcCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 572 VVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 572 VVDasdgi~~qt~-EiL~~ak---~~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
|||+++....+.. .++..+. ..++|+++|+||+|+.... .......+.+. + .++|+++||++|.||
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~------~--~~~~~e~Sa~~~~~v 150 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKE------Y--GMDFFETSACTNSNI 150 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHH------c--CCEEEEEeCCCCCCH
Confidence 9999874332222 2222222 2368999999999985432 12222333221 1 257999999999999
Q ss_pred HHHHHHHHH
Q 004746 646 DDLLETIML 654 (732)
Q Consensus 646 deLfe~Ii~ 654 (732)
+++|++|..
T Consensus 151 ~~~f~~l~~ 159 (161)
T cd04117 151 KESFTRLTE 159 (161)
T ss_pred HHHHHHHHh
Confidence 999999975
No 122
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.83 E-value=1.5e-19 Score=179.69 Aligned_cols=155 Identities=20% Similarity=0.224 Sum_probs=115.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+|+|++|+|||||+++|.+..+...+.+ |..+.++...+.+++..+.+.||||||++.|..++..++..+|++|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYIT--TIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCc--cccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 57999999999999999999998877544433 4444444455556677788999999999999999999999999999
Q ss_pred EEEEecCCCChhh-HHHHHHHHh--cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 571 IVVAADDGIRPQT-NEAIAHAKA--AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 571 LVVDasdgi~~qt-~EiL~~ak~--~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
||||+++....+. ..++..+.. ...|++||+||+|+... ..+......... .++++++||++|.|
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~g 154 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQM---------GISLFETSAKENIN 154 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEECCCCcC
Confidence 9999987533222 223333322 35789999999998643 222222222222 25799999999999
Q ss_pred HHHHHHHHHHHH
Q 004746 645 VDDLLETIMLVA 656 (732)
Q Consensus 645 IdeLfe~Ii~la 656 (732)
|+++|++|....
T Consensus 155 i~~lf~~l~~~~ 166 (199)
T cd04110 155 VEEMFNCITELV 166 (199)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 123
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.83 E-value=1.5e-19 Score=173.39 Aligned_cols=159 Identities=40% Similarity=0.610 Sum_probs=118.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccc----------------cCCceeeeeeEEEEeecCCcceeEEEEeCCCccccc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAE----------------AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse----------------~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~ 556 (732)
+|+|+|.+|+|||||+|+|+........ ..++|.+.....+.. ....+.||||||+..|.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~liDtpG~~~~~ 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW----PDRRVNFIDTPGHEDFS 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee----CCEEEEEEeCCCcHHHH
Confidence 4899999999999999999876554321 234555543333332 34689999999999988
Q ss_pred hhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC-CChHHHHHHHHH----cCCCC-----C
Q 004746 557 AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG-ANPERVMQELSS----IGLMP-----E 626 (732)
Q Consensus 557 ~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~-a~~erv~~eL~e----lgl~~-----e 626 (732)
..+..++..+|++++|+|++++...+..+.+.++...+.|+++|+||+|+.. ........++.+ .+... .
T Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 77 SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 8888888999999999999998888888888888878999999999999965 232333333222 11100 0
Q ss_pred CCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 627 DWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 627 ~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
......+++++||++|.|+++++++|...
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 01135789999999999999999998864
No 124
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.83 E-value=4e-20 Score=182.16 Aligned_cols=157 Identities=14% Similarity=0.183 Sum_probs=112.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+++|..++|||||+++|+...+...+.+ |.+..++...+.+++..+.+.||||+|++.|..++..+++.+|++|+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~--T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iil 78 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQ--TLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILF 78 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEE
Confidence 4799999999999999999998887654444 55555555555667778899999999999999999899999999999
Q ss_pred EEEecCCCChhhH-HHHHHHHh---cCCCEEEEEeCCCCCCCC---h-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 572 VVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDGAN---P-ERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 572 VVDasdgi~~qt~-EiL~~ak~---~~vPIIVViNKiDL~~a~---~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
|||+++....+.. +++..+.. ...| |+|+||+|+.... . ..+..+...+. ..+ +++++++||++|.
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a---~~~--~~~~~e~SAk~g~ 152 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYA---KAM--KAPLIFCSTSHSI 152 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHH---HHc--CCEEEEEeCCCCC
Confidence 9999875433222 23333322 2455 6889999985311 1 11111111110 111 2679999999999
Q ss_pred CHHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLVA 656 (732)
Q Consensus 644 GIdeLfe~Ii~la 656 (732)
|++++|++|....
T Consensus 153 ~v~~lf~~l~~~l 165 (182)
T cd04128 153 NVQKIFKIVLAKA 165 (182)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998643
No 125
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=1.4e-19 Score=168.27 Aligned_cols=146 Identities=24% Similarity=0.363 Sum_probs=110.9
Q ss_pred EEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch--------hhcccccc
Q 004746 495 TIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA--------MRARGARV 565 (732)
Q Consensus 495 aIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~--------~r~r~~~~ 565 (732)
+++|++|+|||||+++|.+.... ....+++|++...+.... .++.+.||||||+..+.. .....+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW----GGREFILIDTGGIEPDDEGISKEIREQAELAIEE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE----CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHh
Confidence 58999999999999999977633 445667787764444432 336799999999887543 23345688
Q ss_pred cCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 566 TDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 566 ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
+|++++|+|+.+.......+++.+++..+.|+++|+||+|+...... ...+...+ ..+++++||++|.|+
T Consensus 77 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~--------~~~~~~~Sa~~~~gv 146 (157)
T cd01894 77 ADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE--AAEFYSLG--------FGEPIPISAEHGRGI 146 (157)
T ss_pred CCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH--HHHHHhcC--------CCCeEEEecccCCCH
Confidence 99999999999877777777778887788999999999999654322 22333222 126899999999999
Q ss_pred HHHHHHHHH
Q 004746 646 DDLLETIML 654 (732)
Q Consensus 646 deLfe~Ii~ 654 (732)
++++++|..
T Consensus 147 ~~l~~~l~~ 155 (157)
T cd01894 147 GDLLDAILE 155 (157)
T ss_pred HHHHHHHHh
Confidence 999999875
No 126
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.82 E-value=3.1e-19 Score=179.56 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=111.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCC-cceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDG-KLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idg-k~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
++|+|+|.+|+|||||+++|.+..+...+.+ |..+.++...+.+++ ..+.+.||||||++.|..++..+++.+|++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~--T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~ii 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQ--TIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVF 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCC--ceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEE
Confidence 4799999999999999999998887655555 444444544444443 4688999999999999999999999999999
Q ss_pred EEEEecCCCChhh-HHHHHHHHh------cCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 571 IVVAADDGIRPQT-NEAIAHAKA------AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 571 LVVDasdgi~~qt-~EiL~~ak~------~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
||||+++....+. .+++..+.. .+.|+|+|+||+|+.... .......+.... .++++++||++
T Consensus 79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~--------~~~~~~iSAkt 150 (215)
T cd04109 79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQAN--------GMESCLVSAKT 150 (215)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHc--------CCEEEEEECCC
Confidence 9999997433222 223333322 245799999999995321 112222222210 25689999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|+||+++|++|....
T Consensus 151 g~gv~~lf~~l~~~l 165 (215)
T cd04109 151 GDRVNLLFQQLAAEL 165 (215)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998653
No 127
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.2e-19 Score=209.10 Aligned_cols=242 Identities=29% Similarity=0.360 Sum_probs=183.2
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCcc------------------ccccCCceeeeeeEEEEeecCCcceeEEEEeC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDT 549 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~------------------vse~~GtTrdI~~y~v~i~idgk~i~ItLIDT 549 (732)
..+..+|+|+||.+||||||..+|+...-. ....+|+|+.....++.. .+ .+.|+||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~--~~-~~~iNlIDT 83 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW--KG-DYRINLIDT 83 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE--cC-ceEEEEeCC
Confidence 456679999999999999999999732111 123457776654444432 33 589999999
Q ss_pred CCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc--------
Q 004746 550 PGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-------- 621 (732)
Q Consensus 550 PGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-------- 621 (732)
|||-+|.....+.++.+|++|+|+|+.+++++|+...|+++...++|.|+++||+|...++......++...
T Consensus 84 PGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v 163 (697)
T COG0480 84 PGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPV 163 (697)
T ss_pred CCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceee
Confidence 999999999999999999999999999999999999999999999999999999998766554444333221
Q ss_pred -----------C-----------CC---CCCC------------------------------------------------
Q 004746 622 -----------G-----------LM---PEDW------------------------------------------------ 628 (732)
Q Consensus 622 -----------g-----------l~---~e~~------------------------------------------------ 628 (732)
+ +. ...|
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred eccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence 0 00 0000
Q ss_pred ------CCCCCEEEEecCCCCCHHHHHHHHHHHHhhhh------------------hccCCCCCccceEEEEeeccCCCc
Q 004746 629 ------GGDIPMVQISALKGEKVDDLLETIMLVAELQE------------------LKANPHRNAKGTVIEAGLHKSKGP 684 (732)
Q Consensus 629 ------gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~------------------lk~~p~r~a~g~Vies~~dkgrG~ 684 (732)
+..++++.-||..+.|++.|++++......+. .....+.++.+.++.+..++..|.
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~ 323 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK 323 (697)
T ss_pred HHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCe
Confidence 01467888899999999999999987654320 022346788899999999999999
Q ss_pred eEEEEEEeeEEecCCEEEEcCe-----eEEEEEEEcCCCCccceecCCCCeeC
Q 004746 685 VATFILQNGTLKKGDVVVCGEA-----FGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 685 VatglV~~GtLk~GD~Iv~G~~-----~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+..++|.+|+|+.||.++.++. .+++..|....-..++++.+|+.|.+
T Consensus 324 l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~ 376 (697)
T COG0480 324 LTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVAL 376 (697)
T ss_pred EEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEE
Confidence 9999999999999999888643 34444444444456999999998753
No 128
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.82 E-value=2.2e-19 Score=169.84 Aligned_cols=155 Identities=16% Similarity=0.232 Sum_probs=108.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC--CccccccCCceeeeeeEEEEeec-CCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKT--KVAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~--k~~vse~~GtTrdI~~y~v~i~i-dgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
++|+|+|.+++|||||+++|... .+...+.+ |.+..++...+.+ .+..+.+.||||||++.|..++..++..+|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLM--TTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCC--ceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCE
Confidence 48999999999999999999864 34333333 3433343333333 3567899999999999999998889999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHHh--cCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAKA--AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak~--~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
+|+|||+++...... ..++..+.. .++|+|+|+||+|+.... .......+... ..++++++||++|.
T Consensus 79 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~~ 150 (164)
T cd04101 79 FILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQA--------NQLKFFKTSALRGV 150 (164)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHH--------cCCeEEEEeCCCCC
Confidence 999999987433221 223333332 368999999999985431 11111222211 12579999999999
Q ss_pred CHHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLVA 656 (732)
Q Consensus 644 GIdeLfe~Ii~la 656 (732)
|++++|+.|....
T Consensus 151 gi~~l~~~l~~~~ 163 (164)
T cd04101 151 GYEEPFESLARAF 163 (164)
T ss_pred ChHHHHHHHHHHh
Confidence 9999999998653
No 129
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.6e-19 Score=179.88 Aligned_cols=157 Identities=23% Similarity=0.263 Sum_probs=125.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
-+..||+|+|+.+|||||||++++.+.|...+.+ |+++++....+.+.+..+.+.+|||+|||+|..+...|++.+.+
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqA--TIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccc--eeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 3458999999999999999999999998877665 77788888778888999999999999999999999999999999
Q ss_pred EEEEEEecCC-CChhhHHHHHHHHhc----CCCEEEEEeCCCCCCCC---hHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 569 AVIVVAADDG-IRPQTNEAIAHAKAA----GVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 569 VILVVDasdg-i~~qt~EiL~~ak~~----~vPIIVViNKiDL~~a~---~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
+|+|||+++. ...++..+|+-+... ++-|++|+||.||.+.. .++-.....++ +..|+++||+
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel---------~a~f~etsak 168 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKEL---------NAEFIETSAK 168 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHh---------CcEEEEeccc
Confidence 9999999984 445566666666543 24488999999996531 11111111122 3579999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLVA 656 (732)
Q Consensus 641 tGeGIdeLfe~Ii~la 656 (732)
.|+||.+||..|....
T Consensus 169 ~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 169 AGENVKQLFRRIAAAL 184 (221)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999987544
No 130
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.82 E-value=2.7e-19 Score=175.19 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=112.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
.+|+|+|++|+|||||+++|...++....... |.+..++...+.+++..+.+.||||||++.|..++..++..+|++||
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQN-TIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCccc-ceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 47999999999999999999988876432222 33333444455567777889999999999998888888899999999
Q ss_pred EEEecCCCChhh-HHHHHHHHh--cCCCEEEEEeCCCCCCCCh-------HHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 572 VVAADDGIRPQT-NEAIAHAKA--AGVPIVIAINKIDKDGANP-------ERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 572 VVDasdgi~~qt-~EiL~~ak~--~~vPIIVViNKiDL~~a~~-------erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
|||+++....+. ..++..+.. .++|+|+|+||+|+..... ....+..... .++++++||++
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~ 150 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI---------KAQHFETSSKT 150 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHc---------CCeEEEEeCCC
Confidence 999987533222 233333333 2689999999999853211 1111111111 25789999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|.|+++||++|....
T Consensus 151 ~~gv~~l~~~i~~~~ 165 (193)
T cd04118 151 GQNVDELFQKVAEDF 165 (193)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998655
No 131
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.82 E-value=1.7e-19 Score=170.22 Aligned_cols=152 Identities=19% Similarity=0.202 Sum_probs=109.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|++|+|||||+++|....+.....+.++.+ +....+.+++..+.+.||||||++.|..+....++.+|++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVD--FKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccce--EEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEE
Confidence 489999999999999999999877654443333322 222333345667889999999999998888888899999999
Q ss_pred EEEecCCCChhhHH-HHH----HHHhcCCCEEEEEeCCCCCCC--ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRPQTNE-AIA----HAKAAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~qt~E-iL~----~ak~~~vPIIVViNKiDL~~a--~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|+|+++....+... ++. +....+.|+++|+||+|+... ..++........ .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~g 149 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKH---------NMLFIETSAKTRDG 149 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHc---------CCEEEEEecCCCCC
Confidence 99998744333222 222 222357889999999999632 233322222222 36799999999999
Q ss_pred HHHHHHHHHH
Q 004746 645 VDDLLETIML 654 (732)
Q Consensus 645 IdeLfe~Ii~ 654 (732)
++++++.|..
T Consensus 150 i~~~~~~~~~ 159 (161)
T cd01863 150 VQQAFEELVE 159 (161)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 132
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=7.6e-20 Score=201.33 Aligned_cols=161 Identities=29% Similarity=0.416 Sum_probs=129.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC-CccccccCCceeeeeeEEEEeecCCcceeEEEEeCCC----------ccccch
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT-KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----------HEAFGA 557 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~-k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG----------hE~f~~ 557 (732)
..+++|+|+|.||+|||||+|+|+++ +..++..+|||+|. +...+..++..+.|+||+| +|.|..
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~----I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv 251 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDS----IDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSV 251 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccc----eeeeEEECCeEEEEEECCCCCcccccccceEEEee
Confidence 46899999999999999999999965 46689999999995 3333344456899999999 466766
Q ss_pred hhcc-cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCC
Q 004746 558 MRAR-GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIP 633 (732)
Q Consensus 558 ~r~r-~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ip 633 (732)
.+.. .+..+|+|+||+|+++++..|+..++.++...+.++|||+||||+... ..+.....+.. .+.... ..+
T Consensus 252 ~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~-~l~~l~---~a~ 327 (444)
T COG1160 252 ARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRR-KLPFLD---FAP 327 (444)
T ss_pred hhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHH-Hhcccc---CCe
Confidence 6654 448899999999999999999999999999999999999999998653 33444444444 222222 368
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHh
Q 004746 634 MVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 634 iVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
++++||++|.|+++||+.+....+
T Consensus 328 i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 328 IVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHH
Confidence 999999999999999999987554
No 133
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.82 E-value=2.6e-19 Score=172.68 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=111.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|++|+|||||+.++....+...+.+ ++ ...+...+.+++..+.+.||||||++.|..++..+++.+|++|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~-t~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~ 77 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVP-TA--FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLL 77 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ce--eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEE
Confidence 4799999999999999999998776544333 33 23455556667777889999999999999999888999999999
Q ss_pred EEEecCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCCC---------------hHHHHHHHHHcCCCCCCCCCCC
Q 004746 572 VVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGAN---------------PERVMQELSSIGLMPEDWGGDI 632 (732)
Q Consensus 572 VVDasdgi~~qt~--EiL~~ak~--~~vPIIVViNKiDL~~a~---------------~erv~~eL~elgl~~e~~gg~i 632 (732)
|||+++....+.. .++..+.. .++|+|+|+||+|+.... .++........ +..
T Consensus 78 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~--------~~~ 149 (173)
T cd04130 78 CFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKI--------GAC 149 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHh--------CCC
Confidence 9999985443332 23433433 368999999999985321 11111111111 123
Q ss_pred CEEEEecCCCCCHHHHHHHHHHH
Q 004746 633 PMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 633 piVeVSAKtGeGIdeLfe~Ii~l 655 (732)
.|++|||++|.||+++|+.+++.
T Consensus 150 ~~~e~Sa~~~~~v~~lf~~~~~~ 172 (173)
T cd04130 150 EYIECSALTQKNLKEVFDTAILA 172 (173)
T ss_pred eEEEEeCCCCCCHHHHHHHHHhh
Confidence 79999999999999999998753
No 134
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.82 E-value=9.4e-20 Score=172.67 Aligned_cols=151 Identities=23% Similarity=0.258 Sum_probs=105.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILV 572 (732)
+|+|+|++++|||||+++|....+.. ..+ |.+...+.+. +..+.+.||||||++.|..++..++..+|++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~--t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIP--TIGFNVETVT----YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCC--ccCcCeEEEE----ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999998766542 222 4344333332 3457899999999999999888899999999999
Q ss_pred EEecCCCChh-hHHHHH-HH---HhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHH
Q 004746 573 VAADDGIRPQ-TNEAIA-HA---KAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (732)
Q Consensus 573 VDasdgi~~q-t~EiL~-~a---k~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGId 646 (732)
+|+++..... ..+.+. .+ ...+.|+++|+||+|+.... ..++...+. ..... ....++++|||++|.||+
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~-~~~~~---~~~~~~~~~Sa~~~~gi~ 149 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLG-LSELK---DRTWSIFKTSAIKGEGLD 149 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhC-ccccC---CCcEEEEEeeccCCCCHH
Confidence 9998742211 122222 22 22478999999999996543 233322221 11111 113479999999999999
Q ss_pred HHHHHHHH
Q 004746 647 DLLETIML 654 (732)
Q Consensus 647 eLfe~Ii~ 654 (732)
++|++|.+
T Consensus 150 ~l~~~l~~ 157 (158)
T cd04151 150 EGMDWLVN 157 (158)
T ss_pred HHHHHHhc
Confidence 99999863
No 135
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.82 E-value=1.8e-19 Score=169.11 Aligned_cols=153 Identities=20% Similarity=0.241 Sum_probs=109.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+++|.+|+|||||+++|....+.....+ ++.+ .+.....+++..+.+.||||||++.|..++..+++.+|++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 77 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEP-TKAD--SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCC-cchh--hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEE
Confidence 4899999999999999999998776543332 2222 233344467777899999999999999999999999999999
Q ss_pred EEEecCCCChh-hHHHHHHH----HhcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 572 VVAADDGIRPQ-TNEAIAHA----KAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 572 VVDasdgi~~q-t~EiL~~a----k~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
|+|+++..... ..+++..+ ...++|+++|+||+|+... ............ .++++++||++|.
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 148 (164)
T cd04139 78 VFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQW---------GVPYVETSAKTRQ 148 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHh---------CCeEEEeeCCCCC
Confidence 99988632111 11222222 2257999999999998651 122222222222 2579999999999
Q ss_pred CHHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLVA 656 (732)
Q Consensus 644 GIdeLfe~Ii~la 656 (732)
|++++|++|....
T Consensus 149 gi~~l~~~l~~~~ 161 (164)
T cd04139 149 NVEKAFYDLVREI 161 (164)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998543
No 136
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.82 E-value=7.8e-20 Score=172.29 Aligned_cols=153 Identities=24% Similarity=0.302 Sum_probs=105.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILV 572 (732)
+|+|+|.+|+|||||+++|....+... . .|.++....+.. ...+.+.||||||++.|..++..++..+|++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~--~t~~~~~~~~~~---~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v 74 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-I--PTVGFNVEMLQL---EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYV 74 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-c--CccCcceEEEEe---CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 489999999999999999998776432 2 244443333332 2457899999999999988888889999999999
Q ss_pred EEecCCCC-hhhHHHHHH----HHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHH
Q 004746 573 VAADDGIR-PQTNEAIAH----AKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (732)
Q Consensus 573 VDasdgi~-~qt~EiL~~----ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGId 646 (732)
+|+++... ......+.. ....+.|+++|+||+|+.... ...+...+....+. ....+++++|||++|+||+
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~Sa~~~~gv~ 151 (160)
T cd04156 75 VDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYC---SDRDWYVQPCSAVTGEGLA 151 (160)
T ss_pred EECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccC---CCCcEEEEecccccCCChH
Confidence 99987532 111122222 122578999999999996532 23332222111111 1123579999999999999
Q ss_pred HHHHHHHH
Q 004746 647 DLLETIML 654 (732)
Q Consensus 647 eLfe~Ii~ 654 (732)
++|++|..
T Consensus 152 ~~~~~i~~ 159 (160)
T cd04156 152 EAFRKLAS 159 (160)
T ss_pred HHHHHHhc
Confidence 99999863
No 137
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=2.4e-19 Score=175.33 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=111.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|..|+|||||+++|....+...+.+ |....+....+.+++..+.+.||||||++.|..++..+++.+|++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iil 78 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKS--TIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLL 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEE
Confidence 4899999999999999999998877643433 33333333344456777889999999999999899999999999999
Q ss_pred EEEecCCCChhh-HHHHHHHH---hcCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 572 VVAADDGIRPQT-NEAIAHAK---AAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 572 VVDasdgi~~qt-~EiL~~ak---~~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
|||+++...... ..++..+. ..+.|+|+|+||+|+.... .......+... ..++++++||++|.|+
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~--------~~~~~~evSa~~~~~i 150 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDS--------LNIPFFETSAKQSINV 150 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHH--------cCCeEEEEeCCCCCCH
Confidence 999987433222 12222222 2357899999999986321 11222222221 1247999999999999
Q ss_pred HHHHHHHHHHH
Q 004746 646 DDLLETIMLVA 656 (732)
Q Consensus 646 deLfe~Ii~la 656 (732)
+++|++|+...
T Consensus 151 ~~~f~~l~~~~ 161 (188)
T cd04125 151 EEAFILLVKLI 161 (188)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 138
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=2.1e-19 Score=185.13 Aligned_cols=154 Identities=15% Similarity=0.159 Sum_probs=114.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+++|+.+||||||+.+|....+...+.+.+ .. .|...+.+++..+.+.||||+|++.|..++..+++.+|++|
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi--~~-~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--FE-NYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCce--ee-eeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 4689999999999999999999888776555433 32 23445566888899999999999999999999999999999
Q ss_pred EEEEecCCCChhh--HHHHHHHHh--cCCCEEEEEeCCCCCCC---------------ChHHHHHHHHHcCCCCCCCCCC
Q 004746 571 IVVAADDGIRPQT--NEAIAHAKA--AGVPIVIAINKIDKDGA---------------NPERVMQELSSIGLMPEDWGGD 631 (732)
Q Consensus 571 LVVDasdgi~~qt--~EiL~~ak~--~~vPIIVViNKiDL~~a---------------~~erv~~eL~elgl~~e~~gg~ 631 (732)
||||+++....+. ..++..+.. .+.|+|+|+||+|+... ..++..+...++ +
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~---------~ 160 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQL---------G 160 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHc---------C
Confidence 9999998554432 233333332 36899999999998531 112222222222 2
Q ss_pred C-CEEEEecCCCC-CHHHHHHHHHHHH
Q 004746 632 I-PMVQISALKGE-KVDDLLETIMLVA 656 (732)
Q Consensus 632 i-piVeVSAKtGe-GIdeLfe~Ii~la 656 (732)
+ .|++|||++|+ ||+++|+.|+...
T Consensus 161 ~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 161 AEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred CCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 4 58999999998 8999999998754
No 139
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.82 E-value=2.1e-19 Score=174.87 Aligned_cols=156 Identities=19% Similarity=0.175 Sum_probs=108.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+++|.+++|||||+++|....+. ...+ |.+.....+. ...+.+.||||||++.|..++..+++.+|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~--t~~~~~~~~~----~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ 83 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIP--TIGFNVETVT----YKNISFTVWDVGGQDKIRPLWRHYYTNTQG 83 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCC--ccccceEEEE----ECCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 34689999999999999999999866653 2333 4343333332 245789999999999999999999999999
Q ss_pred EEEEEEecCCCC-hhhHHHHHHHH----hcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIR-PQTNEAIAHAK----AAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~-~qt~EiL~~ak----~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|+|||+++... ....+.+..+. ..++|++||+||+|+.+... +++...+ ++... ....+.++++||++|
T Consensus 84 ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~---~~~~~-~~~~~~~~~~Sa~~g 159 (175)
T smart00177 84 LIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKL---GLHSI-RDRNWYIQPTCATSG 159 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHh---Ccccc-CCCcEEEEEeeCCCC
Confidence 999999987422 22233333321 23689999999999975432 2332222 21110 112345778999999
Q ss_pred CCHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLV 655 (732)
Q Consensus 643 eGIdeLfe~Ii~l 655 (732)
.||+++|++|...
T Consensus 160 ~gv~e~~~~l~~~ 172 (175)
T smart00177 160 DGLYEGLTWLSNN 172 (175)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998754
No 140
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.82 E-value=2.3e-19 Score=172.51 Aligned_cols=155 Identities=21% Similarity=0.263 Sum_probs=113.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccc-hhhcccccccCeE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG-AMRARGARVTDIA 569 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~-~~r~r~~~~ADiV 569 (732)
.++|+++|++|+|||||+++|+...+.....+ |....++...+.+++..+.+.||||||++.|. .++..+++.+|++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~ 79 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEA--TIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAV 79 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcccc--ceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEE
Confidence 47899999999999999999998776544433 44444455555567777899999999999886 4677788999999
Q ss_pred EEEEEecCCCChhhH-HHHHHHHh----cCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCC-
Q 004746 570 VIVVAADDGIRPQTN-EAIAHAKA----AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALK- 641 (732)
Q Consensus 570 ILVVDasdgi~~qt~-EiL~~ak~----~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKt- 641 (732)
|+|||+++....+.. .++..+.. .++|+|+|+||+|+.... .......+... ..++|+++||++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~e~Sa~~~ 151 (170)
T cd04115 80 VFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADA--------HSMPLFETSAKDP 151 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHH--------cCCcEEEEeccCC
Confidence 999999976544433 23333322 368999999999985422 22333333321 136799999999
Q ss_pred --CCCHHHHHHHHHHH
Q 004746 642 --GEKVDDLLETIMLV 655 (732)
Q Consensus 642 --GeGIdeLfe~Ii~l 655 (732)
+.||+++|..|+..
T Consensus 152 ~~~~~i~~~f~~l~~~ 167 (170)
T cd04115 152 SENDHVEAIFMTLAHK 167 (170)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 89999999888753
No 141
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=2.9e-19 Score=169.92 Aligned_cols=156 Identities=18% Similarity=0.204 Sum_probs=113.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
..++|+++|++|+|||||+++|....+...+. .|....+....+.+++..+.+.||||||++.|...+..++..+|++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQG--ATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 34789999999999999999999766654433 3433334444455667777899999999999998888889999999
Q ss_pred EEEEEecCCCChh----hHHHHHHHHhcCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 570 VIVVAADDGIRPQ----TNEAIAHAKAAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 570 ILVVDasdgi~~q----t~EiL~~ak~~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
|+|||+++....+ +...+..+...++|+|+|+||+|+.... .......+.... ...++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~--------~~~~~~~Sa~~~~ 155 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQ--------DMYYLETSAKESD 155 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHc--------CCeEEEeeCCCCC
Confidence 9999998753322 2222233333478999999999985421 122233333321 2579999999999
Q ss_pred CHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLV 655 (732)
Q Consensus 644 GIdeLfe~Ii~l 655 (732)
|++++|++|...
T Consensus 156 gv~~l~~~i~~~ 167 (169)
T cd04114 156 NVEKLFLDLACR 167 (169)
T ss_pred CHHHHHHHHHHH
Confidence 999999999853
No 142
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.82 E-value=3.9e-19 Score=170.24 Aligned_cols=160 Identities=25% Similarity=0.280 Sum_probs=108.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
.+|+|+|++++|||||+++|.+..+...+.+.+ .. .+...+.+++..+.+.||||||++.|..++..++..+|++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~--~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--FE-NYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 78 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--cc-ceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEE
Confidence 589999999999999999999887764443322 21 122334456777889999999999999888888899999999
Q ss_pred EEEecCCCChhhH-H-HHHHHHh--cCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCC---------CCCCCCCEEEEe
Q 004746 572 VVAADDGIRPQTN-E-AIAHAKA--AGVPIVIAINKIDKDGANPERVMQELSSIGLMPE---------DWGGDIPMVQIS 638 (732)
Q Consensus 572 VVDasdgi~~qt~-E-iL~~ak~--~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e---------~~gg~ipiVeVS 638 (732)
|||+++....+.. + ++..+.. .++|+++|+||+|+..... ....+........ .-.+..++++||
T Consensus 79 v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 156 (175)
T cd01870 79 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH--TRRELAKMKQEPVKPEEGRDMANKIGAFGYMECS 156 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh--hhhhhhhccCCCccHHHHHHHHHHcCCcEEEEec
Confidence 9999864322222 1 2222222 4789999999999854211 1000100000000 000134799999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 004746 639 ALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 639 AKtGeGIdeLfe~Ii~la 656 (732)
|++|.|++++|++|...+
T Consensus 157 a~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 157 AKTKEGVREVFEMATRAA 174 (175)
T ss_pred cccCcCHHHHHHHHHHHh
Confidence 999999999999998643
No 143
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.81 E-value=3.9e-19 Score=166.18 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=109.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
.+|+|+|.+|+|||||+++|+...+.....+.++.++ ....+.+.+..+.+.+|||||++.|..++..++..+|++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASF--FQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAIL 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeE--EEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEE
Confidence 4899999999999999999998877644444333333 23333345666789999999999999888888899999999
Q ss_pred EEEecCCCChhhH-HH---HHHHHhcCCCEEEEEeCCCCCCCC---hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRPQTN-EA---IAHAKAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~qt~-Ei---L~~ak~~~vPIIVViNKiDL~~a~---~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|+|+++....+.. .+ +......++|+|+|+||+|+.... ........... .++++++||++|+|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~s~~~~~g 149 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSV---------GAKHFETSAKTGKG 149 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCCC
Confidence 9999875432222 22 222222368999999999986421 22222222222 35789999999999
Q ss_pred HHHHHHHHHHH
Q 004746 645 VDDLLETIMLV 655 (732)
Q Consensus 645 IdeLfe~Ii~l 655 (732)
+++++++|...
T Consensus 150 i~~~~~~l~~~ 160 (162)
T cd04123 150 IEELFLSLAKR 160 (162)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 144
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.81 E-value=2.2e-19 Score=180.70 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=112.5
Q ss_pred EeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEec
Q 004746 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAAD 576 (732)
Q Consensus 497 VG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDas 576 (732)
+|+.++|||||+++|+...+...+. .|.++.++...+.+++..+.+.||||+|++.|..++..+++.+|++|||||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~--~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYV--ATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECC
Confidence 6999999999999999777654333 36666666666667788899999999999999999999999999999999999
Q ss_pred CCCChhhH-HHHHHHHh--cCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHH
Q 004746 577 DGIRPQTN-EAIAHAKA--AGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETI 652 (732)
Q Consensus 577 dgi~~qt~-EiL~~ak~--~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~I 652 (732)
+....+.. .++..+.. .++|+|+|+||+|+..... .+.. .+... ..+.|++|||++|.||+++|++|
T Consensus 79 ~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~--------~~~~~~e~SAk~~~~v~~~F~~l 149 (200)
T smart00176 79 ARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSI-TFHRK--------KNLQYYDISAKSNYNFEKPFLWL 149 (200)
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHH-HHHHH--------cCCEEEEEeCCCCCCHHHHHHHH
Confidence 86544322 23333332 4789999999999854221 1111 12111 13679999999999999999999
Q ss_pred HHHH
Q 004746 653 MLVA 656 (732)
Q Consensus 653 i~la 656 (732)
+...
T Consensus 150 ~~~i 153 (200)
T smart00176 150 ARKL 153 (200)
T ss_pred HHHH
Confidence 8654
No 145
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.81 E-value=4.4e-19 Score=163.45 Aligned_cols=151 Identities=23% Similarity=0.318 Sum_probs=111.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+++|.+++|||||+++|.+..+...+.+ |.....+...+..++..+.+.|||+||++.|......++..+|++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~ 78 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKS--TIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAIL 78 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCC--ceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEE
Confidence 4799999999999999999998877655333 33444455555556677889999999999998888888899999999
Q ss_pred EEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCC--CC-ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKD--GA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~--~a-~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|+|+++....+. ..++..+.. .+.|+++++||+|+. .. ..+........ ..++++++||++|.|
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~~~~sa~~~~~ 149 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKE---------NGLLFFETSAKTGEN 149 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHH---------cCCeEEEEecCCCCC
Confidence 999987332222 233334433 358999999999995 22 23333333322 136799999999999
Q ss_pred HHHHHHHHH
Q 004746 645 VDDLLETIM 653 (732)
Q Consensus 645 IdeLfe~Ii 653 (732)
+++++++|.
T Consensus 150 i~~~~~~i~ 158 (159)
T cd00154 150 VEELFQSLA 158 (159)
T ss_pred HHHHHHHHh
Confidence 999999885
No 146
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.81 E-value=3.5e-19 Score=168.97 Aligned_cols=152 Identities=25% Similarity=0.311 Sum_probs=108.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|.+|+|||||+++|++..+.....+.+. + .+.......+..+.+.||||||++.|...+...+..+|++++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~ 77 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-D--NYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLI 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-e--eeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEE
Confidence 4899999999999999999998877544333222 1 223333456777899999999999988887788899999999
Q ss_pred EEEecCCCChhh--HHHHHHHHh--cCCCEEEEEeCCCCCCCChH--------------HHHHHHHHcCCCCCCCCCCCC
Q 004746 572 VVAADDGIRPQT--NEAIAHAKA--AGVPIVIAINKIDKDGANPE--------------RVMQELSSIGLMPEDWGGDIP 633 (732)
Q Consensus 572 VVDasdgi~~qt--~EiL~~ak~--~~vPIIVViNKiDL~~a~~e--------------rv~~eL~elgl~~e~~gg~ip 633 (732)
|||+++....+. .+++..+.. .++|+++|+||+|+...... .........+ ..+
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~~~ 149 (171)
T cd00157 78 CFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG--------AIG 149 (171)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC--------CeE
Confidence 999987433222 223333332 35999999999998654321 1122222221 237
Q ss_pred EEEEecCCCCCHHHHHHHHHH
Q 004746 634 MVQISALKGEKVDDLLETIML 654 (732)
Q Consensus 634 iVeVSAKtGeGIdeLfe~Ii~ 654 (732)
++++||++|.|+++++++|..
T Consensus 150 ~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 150 YMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEEeecCCCCCHHHHHHHHhh
Confidence 999999999999999999874
No 147
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.81 E-value=2.7e-19 Score=172.48 Aligned_cols=153 Identities=20% Similarity=0.156 Sum_probs=105.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILV 572 (732)
+|+++|.+++|||||+++|....+.. ...|.+.....+. ...+.+.||||||++.|..++..++..+|++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~---~~~T~~~~~~~~~----~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ---PIPTIGFNVETVE----YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC---cCCcCceeEEEEE----ECCEEEEEEECCCChhcchHHHHHhccCCEEEEE
Confidence 58999999999999999999875432 2335444443332 3457899999999999988888889999999999
Q ss_pred EEecCCCCh-hhHHHHHHHH----hcCCCEEEEEeCCCCCCC-ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHH
Q 004746 573 VAADDGIRP-QTNEAIAHAK----AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (732)
Q Consensus 573 VDasdgi~~-qt~EiL~~ak----~~~vPIIVViNKiDL~~a-~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGId 646 (732)
+|+++.... ...+++..+. ..+.|+++|+||+|+... ..++..+.+ ... .......+.+++|||++|.||+
T Consensus 74 ~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~Sa~~g~gv~ 150 (169)
T cd04158 74 VDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELL-SLH--KLCCGRSWYIQGCDARSGMGLY 150 (169)
T ss_pred EeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHh-CCc--cccCCCcEEEEeCcCCCCCCHH
Confidence 999874211 1222222221 235799999999999654 223333222 211 0001112468899999999999
Q ss_pred HHHHHHHHH
Q 004746 647 DLLETIMLV 655 (732)
Q Consensus 647 eLfe~Ii~l 655 (732)
++|++|...
T Consensus 151 ~~f~~l~~~ 159 (169)
T cd04158 151 EGLDWLSRQ 159 (169)
T ss_pred HHHHHHHHH
Confidence 999999753
No 148
>PLN03110 Rab GTPase; Provisional
Probab=99.81 E-value=3.6e-19 Score=179.88 Aligned_cols=157 Identities=20% Similarity=0.255 Sum_probs=117.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
..++|+|+|++|+|||||+++|.+..+...+.+ |..+.+....+.+++..+.+.||||||++.|..++..+++.+|++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~--t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKS--TIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 347999999999999999999998877654444 444455555556677788999999999999999998999999999
Q ss_pred EEEEEecCCCChhhH-HHHHHHHh---cCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 570 VIVVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 570 ILVVDasdgi~~qt~-EiL~~ak~---~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
|||||+++....+.. .++..+.. .++|+|+|+||+|+.... ..+....+... ..++|+++||++|.
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~--------~~~~~~e~SA~~g~ 160 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK--------EGLSFLETSALEAT 160 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHH--------cCCEEEEEeCCCCC
Confidence 999999875443332 23333332 478999999999985421 22233333321 13689999999999
Q ss_pred CHHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLVA 656 (732)
Q Consensus 644 GIdeLfe~Ii~la 656 (732)
|++++|++|+...
T Consensus 161 ~v~~lf~~l~~~i 173 (216)
T PLN03110 161 NVEKAFQTILLEI 173 (216)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997543
No 149
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.81 E-value=2.6e-19 Score=174.59 Aligned_cols=160 Identities=23% Similarity=0.226 Sum_probs=110.5
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
..+.++|+|+|+.|+|||||+++|....+. ... .|.+.....+. ++ ++.+.+|||||++.|...+..++..+|
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~--~T~~~~~~~i~--~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad 88 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHV--PTLHPTSEELT--IG--NIKFKTFDLGGHEQARRLWKDYFPEVD 88 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccC--CccCcceEEEE--EC--CEEEEEEECCCCHHHHHHHHHHhccCC
Confidence 456789999999999999999999977653 222 24433333333 33 468999999999998888888889999
Q ss_pred eEEEEEEecCCCCh-hhHHHHHHH----HhcCCCEEEEEeCCCCCCC-ChHHHHHHHHHcCCCC-------CCCCCCCCE
Q 004746 568 IAVIVVAADDGIRP-QTNEAIAHA----KAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMP-------EDWGGDIPM 634 (732)
Q Consensus 568 iVILVVDasdgi~~-qt~EiL~~a----k~~~vPIIVViNKiDL~~a-~~erv~~eL~elgl~~-------e~~gg~ipi 634 (732)
++++|+|+++.... ...+.+..+ ...+.|+++++||+|+... ..+++...+....... +.....+.+
T Consensus 89 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 89 GIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 99999999864221 122222222 2356899999999998653 3334433332221111 112234579
Q ss_pred EEEecCCCCCHHHHHHHHHH
Q 004746 635 VQISALKGEKVDDLLETIML 654 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~ 654 (732)
++|||++|+|++++|++|..
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred EEeEecCCCChHHHHHHHHh
Confidence 99999999999999999975
No 150
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.81 E-value=4.5e-19 Score=177.42 Aligned_cols=156 Identities=18% Similarity=0.191 Sum_probs=108.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch--------hhcccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA--------MRARGA 563 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~--------~r~r~~ 563 (732)
.+|+|+|.+|||||||+++|.+..+...+.+.++.+ .+...+.+++..+.++||||||++.|.. .+...+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~--~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~ 78 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRR--LYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL 78 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccc--cceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhh
Confidence 479999999999999999999888765555544333 3333444577778899999999765421 123456
Q ss_pred cccCeEEEEEEecCCCChhhH-HHHHHHH------hcCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCE
Q 004746 564 RVTDIAVIVVAADDGIRPQTN-EAIAHAK------AAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPM 634 (732)
Q Consensus 564 ~~ADiVILVVDasdgi~~qt~-EiL~~ak------~~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipi 634 (732)
..+|++|||||+++....+.. .++..+. ..++|+|+|+||+|+.... .....+.+... . ..++|
T Consensus 79 ~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~ 151 (198)
T cd04142 79 RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRK-----S--WKCGY 151 (198)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHH-----h--cCCcE
Confidence 889999999999975433322 2222221 2468999999999995421 11222222111 1 14689
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q 004746 635 VQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~la 656 (732)
+++||++|.||++||+.++...
T Consensus 152 ~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 152 LECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998654
No 151
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.81 E-value=3.8e-19 Score=184.44 Aligned_cols=156 Identities=21% Similarity=0.293 Sum_probs=113.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|..|+|||||+++|+...+...+.+.+ . .++...+.+++..+.+.||||+|++.|..++..++..+|++||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi-~--d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIl 77 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-E--DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFIL 77 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCh-h--HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 479999999999999999999887765444322 2 2344455567778899999999999999888888899999999
Q ss_pred EEEecCCCChhhH-HHHHHHH------------hcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEE
Q 004746 572 VVAADDGIRPQTN-EAIAHAK------------AAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMV 635 (732)
Q Consensus 572 VVDasdgi~~qt~-EiL~~ak------------~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiV 635 (732)
|||+++....+.. .++..+. ..++|+|+|+||+|+.. ...+++.+.+... ..+.++
T Consensus 78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~--------~~~~~~ 149 (247)
T cd04143 78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD--------ENCAYF 149 (247)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc--------CCCEEE
Confidence 9999975332221 2222221 13689999999999953 1223333222211 135799
Q ss_pred EEecCCCCCHHHHHHHHHHHHhh
Q 004746 636 QISALKGEKVDDLLETIMLVAEL 658 (732)
Q Consensus 636 eVSAKtGeGIdeLfe~Ii~lael 658 (732)
++||++|.||+++|++|..++.+
T Consensus 150 evSAktg~gI~elf~~L~~~~~~ 172 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLAKL 172 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999986644
No 152
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.81 E-value=3.2e-19 Score=175.45 Aligned_cols=156 Identities=18% Similarity=0.180 Sum_probs=108.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+++|..++|||||+++|....+. ... .|.++....+ +...+.+.||||||++.|..++..+++.+|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~--pt~g~~~~~~----~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~ 87 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-ccc--CCcceeEEEE----EECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 44579999999999999999999876654 222 3444433332 2345789999999999999999999999999
Q ss_pred EEEEEEecCCCChh-hHHHHHHH-H---hcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIRPQ-TNEAIAHA-K---AAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~~q-t~EiL~~a-k---~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|+|||+++..... ..+.+..+ . ..++|++||+||+|+.+... +++...+ ++....+ ..+.++++||++|
T Consensus 88 iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l---~l~~~~~-~~~~~~~~Sa~~g 163 (181)
T PLN00223 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL---GLHSLRQ-RHWYIQSTCATSG 163 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHh---CccccCC-CceEEEeccCCCC
Confidence 99999999743221 22222222 1 13689999999999976432 2222222 2211111 1235678999999
Q ss_pred CCHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLV 655 (732)
Q Consensus 643 eGIdeLfe~Ii~l 655 (732)
+||+++|++|...
T Consensus 164 ~gv~e~~~~l~~~ 176 (181)
T PLN00223 164 EGLYEGLDWLSNN 176 (181)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999754
No 153
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=4.3e-19 Score=178.87 Aligned_cols=155 Identities=17% Similarity=0.245 Sum_probs=111.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeec-CCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~i-dgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
++|+|+|.+|+|||||+++|....+.....+ |.+..++...+.+ ++..+.+.||||||++.|..++..+++.+|++|
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~--ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDP--TVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCc--eeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 6899999999999999999998877644443 4444444444443 456678999999999999998888999999999
Q ss_pred EEEEecCCCChhh-HHHHHHHH----hcCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 571 IVVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 571 LVVDasdgi~~qt-~EiL~~ak----~~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
+|||+++...... .+++..+. ....|+|+|+||+|+.... .......+... + .++++++||++|.
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~------~--~~~~~e~Sak~g~ 152 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKD------L--GMKYIETSARTGD 152 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHH------h--CCEEEEEeCCCCC
Confidence 9999987432221 22222222 2346789999999985421 11222222221 1 2679999999999
Q ss_pred CHHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLVA 656 (732)
Q Consensus 644 GIdeLfe~Ii~la 656 (732)
||+++|++|....
T Consensus 153 ~v~e~f~~l~~~~ 165 (211)
T cd04111 153 NVEEAFELLTQEI 165 (211)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998643
No 154
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.81 E-value=4.1e-19 Score=185.50 Aligned_cols=155 Identities=20% Similarity=0.281 Sum_probs=109.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcccc-ch-------hhcccc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF-GA-------MRARGA 563 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f-~~-------~r~r~~ 563 (732)
+|+|+|++|+|||||+|+|++.++. ++..+++|++.- ..+. .. .+..+.||||||+... .. ....++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i-~~i~--~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI-SGIH--TT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAI 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE-EEEE--Ec-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHH
Confidence 6899999999999999999988764 677888998742 1221 12 2357999999996432 11 123456
Q ss_pred cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 564 RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 564 ~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
..+|++++|+|+++....+ ..++..+...+.|+|+|+||+|+.. .......+..+.. +....+++++||++|.
T Consensus 78 ~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~----~~~~~~v~~iSA~~g~ 150 (270)
T TIGR00436 78 GGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF--KDKLLPLIDKYAI----LEDFKDIVPISALTGD 150 (270)
T ss_pred hhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC--HHHHHHHHHHHHh----hcCCCceEEEecCCCC
Confidence 8999999999999865543 4556666777899999999999853 2222222222110 0111379999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 004746 644 KVDDLLETIMLVAEL 658 (732)
Q Consensus 644 GIdeLfe~Ii~lael 658 (732)
|+++|+++|......
T Consensus 151 gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 151 NTSFLAAFIEVHLPE 165 (270)
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999876543
No 155
>PRK15494 era GTPase Era; Provisional
Probab=99.81 E-value=3.5e-19 Score=192.59 Aligned_cols=159 Identities=23% Similarity=0.325 Sum_probs=115.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcc-ccchhh-------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE-AFGAMR------- 559 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE-~f~~~r------- 559 (732)
.+..+|+|+|++|||||||+|+|++.++. ++..+++|++.....+. . .+..+.||||||+. .+..+.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~--~--~~~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIIT--L--KDTQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEE--e--CCeEEEEEECCCcCCCcccHHHHHHHHH
Confidence 35569999999999999999999988765 45667788765333332 2 34579999999963 332211
Q ss_pred cccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 560 ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 560 ~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
...+..+|++|||+|+.+.+......++..++..+.|.|+|+||+|+.........+.+.... ....+|++||
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~-------~~~~i~~iSA 198 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENH-------PDSLLFPISA 198 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcC-------CCcEEEEEec
Confidence 124678999999999988776666667777777788989999999996543333333333221 1357999999
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q 004746 640 LKGEKVDDLLETIMLVAEL 658 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~lael 658 (732)
++|.|+++|+++|...+..
T Consensus 199 ktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred cCccCHHHHHHHHHHhCCC
Confidence 9999999999999875543
No 156
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.81 E-value=3.2e-19 Score=178.61 Aligned_cols=161 Identities=29% Similarity=0.396 Sum_probs=114.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCC---ccccccCCceeeeeeEEEEee-----------------------cC--C----
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTK---VAAAEAGGITQGIGAYKVQVP-----------------------VD--G---- 539 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k---~~vse~~GtTrdI~~y~v~i~-----------------------id--g---- 539 (732)
++|+|+||.|+|||||+.+|.... .......+.|...++..+.+. .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997542 123334455655554443321 00 1
Q ss_pred cceeEEEEeCCCccccchhhcccccccCeEEEEEEecCC-CChhhHHHHHHHHhcCC-CEEEEEeCCCCCCCC-hHHHHH
Q 004746 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-IRPQTNEAIAHAKAAGV-PIVIAINKIDKDGAN-PERVMQ 616 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdg-i~~qt~EiL~~ak~~~v-PIIVViNKiDL~~a~-~erv~~ 616 (732)
....++|||||||+.|...+..++..+|++|||+|++++ ...++.+.+..+...++ |+|+|+||+|+.... .....+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYE 160 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHH
Confidence 126899999999999988888888999999999999984 56777788877766665 599999999996421 222222
Q ss_pred HHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHH
Q 004746 617 ELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (732)
Q Consensus 617 eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~ 654 (732)
.+.+.- .......+++|++||++|+||++|+++|..
T Consensus 161 ~i~~~~--~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 161 QIKKFV--KGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred HHHHHH--hccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 222210 000112468999999999999999999975
No 157
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=1e-19 Score=182.88 Aligned_cols=146 Identities=28% Similarity=0.431 Sum_probs=108.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCC-ccc------------------------------cccCCceeeeeeEEEEeecCCcc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTK-VAA------------------------------AEAGGITQGIGAYKVQVPVDGKL 541 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k-~~v------------------------------se~~GtTrdI~~y~v~i~idgk~ 541 (732)
+|+|+||+|+|||||+++|+... ... ...+|+|++.....+. ..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~----~~~ 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS----TPK 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe----cCC
Confidence 58999999999999999997432 111 1236788877554433 345
Q ss_pred eeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCChH---HHHHH
Q 004746 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPE---RVMQE 617 (732)
Q Consensus 542 i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~~e---rv~~e 617 (732)
..++|||||||++|...+..++..+|++|+|+|+++++..++.+++..+...+.| +|+|+||+|+.....+ .+...
T Consensus 77 ~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 77 RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 6899999999999987777788999999999999999888888777777777765 7889999999754332 22222
Q ss_pred HH----HcCCCCCCCCCCCCEEEEecCCCCCHHHH
Q 004746 618 LS----SIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (732)
Q Consensus 618 L~----elgl~~e~~gg~ipiVeVSAKtGeGIdeL 648 (732)
+. .+++ ...++|+|||++|.|+++.
T Consensus 157 ~~~~~~~~~~------~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFAAKLGI------EDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHcCC------CCceEEEEeCCCCCCCccC
Confidence 22 2222 1357999999999999864
No 158
>PRK04213 GTP-binding protein; Provisional
Probab=99.81 E-value=5.8e-19 Score=174.15 Aligned_cols=154 Identities=28% Similarity=0.408 Sum_probs=107.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc-----------cccchh
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-----------EAFGAM 558 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh-----------E~f~~~ 558 (732)
+.++|+|+|++|+|||||+|+|.+..+.....+++|++... +. +. .+.||||||+ +.|..+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~--~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YD--WG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Ee--ec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 45799999999999999999999887776677788776422 21 22 5899999993 445444
Q ss_pred hcccc----cccCeEEEEEEecCCC-----------ChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHH-HHcC
Q 004746 559 RARGA----RVTDIAVIVVAADDGI-----------RPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQEL-SSIG 622 (732)
Q Consensus 559 r~r~~----~~ADiVILVVDasdgi-----------~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL-~elg 622 (732)
+..++ ..+|++++|+|.+... ...+.+++..+...++|+|+|+||+|+.... .....++ ..++
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~ 158 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-DEVLDEIAERLG 158 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-HHHHHHHHHHhc
Confidence 33333 4568999999986421 1234556666667789999999999996543 2222232 2233
Q ss_pred C--CCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 623 L--MPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 623 l--~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
. ....| ..+++++||++| ||++++++|...
T Consensus 159 ~~~~~~~~--~~~~~~~SA~~g-gi~~l~~~l~~~ 190 (201)
T PRK04213 159 LYPPWRQW--QDIIAPISAKKG-GIEELKEAIRKR 190 (201)
T ss_pred CCcccccc--CCcEEEEecccC-CHHHHHHHHHHh
Confidence 2 11111 246899999999 999999999864
No 159
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=4e-19 Score=172.04 Aligned_cols=158 Identities=18% Similarity=0.181 Sum_probs=111.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
++.++|+++|.+|+|||||+++|+...+. ..+.+ |....+....+.+++..+.+.||||+|++.|..++..++..+|
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~--T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d 79 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSP--TIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACD 79 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCC--ccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCC
Confidence 45689999999999999999999988876 44444 3222222223445677778999999999999888888899999
Q ss_pred eEEEEEEecCCCChhh-HHHHHHHH-hcCCCEEEEEeCCCCCCCCh--HHHHHHHHH-cCCCCCCCCCCCCEEEEecCCC
Q 004746 568 IAVIVVAADDGIRPQT-NEAIAHAK-AAGVPIVIAINKIDKDGANP--ERVMQELSS-IGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 568 iVILVVDasdgi~~qt-~EiL~~ak-~~~vPIIVViNKiDL~~a~~--erv~~eL~e-lgl~~e~~gg~ipiVeVSAKtG 642 (732)
++|||||+++....+. .+++..+. ..++|+|+|+||+|+..... ......+.. +++ ..++++||++|
T Consensus 80 ~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~ 151 (169)
T cd01892 80 VACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL--------PPPLHFSSKLG 151 (169)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCC--------CCCEEEEeccC
Confidence 9999999987432221 23333332 23689999999999854221 011122221 221 23689999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.|++++|+.|....
T Consensus 152 ~~v~~lf~~l~~~~ 165 (169)
T cd01892 152 DSSNELFTKLATAA 165 (169)
T ss_pred ccHHHHHHHHHHHh
Confidence 99999999998653
No 160
>PLN03118 Rab family protein; Provisional
Probab=99.81 E-value=7.5e-19 Score=175.89 Aligned_cols=155 Identities=20% Similarity=0.198 Sum_probs=111.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
..++|+|+|++|+|||||+++|....+. ...+ |....+....+.+++..+.+.||||||++.|..++..+++.+|++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAP--TIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCC--CceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 3579999999999999999999987653 2222 333333334444566678899999999999999999999999999
Q ss_pred EEEEEecCCCChhhHH-HH-HHHH----hcCCCEEEEEeCCCCCCCC---hHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 570 VIVVAADDGIRPQTNE-AI-AHAK----AAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 570 ILVVDasdgi~~qt~E-iL-~~ak----~~~vPIIVViNKiDL~~a~---~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
|||||+++....+... .+ ..+. ..+.|+|+|+||+|+.... .+......... .++||++||+
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~---------~~~~~e~SAk 160 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEH---------GCLFLECSAK 160 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc---------CCEEEEEeCC
Confidence 9999999754333332 12 1121 2357899999999986422 12222222222 2579999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLVA 656 (732)
Q Consensus 641 tGeGIdeLfe~Ii~la 656 (732)
+|.|++++|++|....
T Consensus 161 ~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 161 TRENVEQCFEELALKI 176 (211)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 161
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=5.4e-19 Score=192.67 Aligned_cols=238 Identities=26% Similarity=0.362 Sum_probs=179.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc-CCcc---------------c------cccCCceeeeeeEEEEeecCCcceeEEEE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK-TKVA---------------A------AEAGGITQGIGAYKVQVPVDGKLQPCVFL 547 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~-~k~~---------------v------se~~GtTrdI~~y~v~i~idgk~i~ItLI 547 (732)
+....+||-||++|||||...|+- ...+ . ....||.. .+--++++..++.++|+
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISV----tsSVMqF~Y~~~~iNLL 86 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISV----TSSVMQFDYADCLVNLL 86 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceE----EeeEEEeccCCeEEecc
Confidence 446799999999999999998862 1111 0 11234433 23233345567899999
Q ss_pred eCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CC--C
Q 004746 548 DTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GL--M 624 (732)
Q Consensus 548 DTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl--~ 624 (732)
|||||++|..-..+.+..+|.++.|||+..|+.+|++.+++-++..++||+-++||+|....++-++..++++. ++ .
T Consensus 87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~ 166 (528)
T COG4108 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCA 166 (528)
T ss_pred CCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCccee
Confidence 99999999999999999999999999999999999999999999999999999999999888887777766541 10 0
Q ss_pred CCC-----------------------------------------------------------------------------
Q 004746 625 PED----------------------------------------------------------------------------- 627 (732)
Q Consensus 625 ~e~----------------------------------------------------------------------------- 627 (732)
+-.
T Consensus 167 PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl 246 (528)
T COG4108 167 PITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFL 246 (528)
T ss_pred cccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHh
Confidence 000
Q ss_pred CCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhcc-------CCCCCccceEEEEeec---cCCCceEEEEEEeeEEec
Q 004746 628 WGGDIPMVQISALKGEKVDDLLETIMLVAELQELKA-------NPHRNAKGTVIEAGLH---KSKGPVATFILQNGTLKK 697 (732)
Q Consensus 628 ~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~-------~p~r~a~g~Vies~~d---kgrG~VatglV~~GtLk~ 697 (732)
-|.-.|+|+-||+++.||+.+++.+...+..+.... ..+..+.|+|+.+... ++|.++|..+|++|.+.+
T Consensus 247 ~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkfer 326 (528)
T COG4108 247 AGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFER 326 (528)
T ss_pred cCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccC
Confidence 023479999999999999999999998876543211 1234588999987753 678999999999999999
Q ss_pred CCEEEE---cCeeEEEEE---EEcCCCCccceecCCCCeeC
Q 004746 698 GDVVVC---GEAFGKVRA---LFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 698 GD~Iv~---G~~~gkVrs---I~~~~g~~V~~A~pG~~V~I 732 (732)
|+.+.. |.. .++.. .+-..-+.+++|.||+.|.|
T Consensus 327 GMkv~h~rtGK~-~~ls~~~~f~A~dRe~ve~A~aGDIIGl 366 (528)
T COG4108 327 GMKVTHVRTGKD-VKLSDALTFMAQDRETVEEAYAGDIIGL 366 (528)
T ss_pred CceeeeeecCCc-eEecchHhhhhhhhhhhhhccCCCeEec
Confidence 999876 322 22222 22233356999999998764
No 162
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.81 E-value=5.8e-19 Score=169.20 Aligned_cols=153 Identities=23% Similarity=0.325 Sum_probs=109.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+++|.+|+|||||+++|.+..+.....+ ++.+ .+...+.+++..+.+.+|||||++.|..++..+++.+|++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vl 78 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDP-TIED--SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLL 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCC-cchh--eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEE
Confidence 5899999999999999999998776544333 2222 233444556777889999999999999999999999999999
Q ss_pred EEEecCCCChhhH----H-HHHHHHhcCCCEEEEEeCCCCCCCC---hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 572 VVAADDGIRPQTN----E-AIAHAKAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 572 VVDasdgi~~qt~----E-iL~~ak~~~vPIIVViNKiDL~~a~---~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
|||+++....+.. + +.......++|+|+++||+|+.... .+........ | +.++++++||++|.
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~SA~~~~ 150 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQ-------W-GNVPFYETSARKRT 150 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHH-------c-CCceEEEeeCCCCC
Confidence 9999874322221 1 2122223478999999999985422 1222222111 2 13679999999999
Q ss_pred CHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLV 655 (732)
Q Consensus 644 GIdeLfe~Ii~l 655 (732)
||+++|++|...
T Consensus 151 ~i~~~f~~i~~~ 162 (168)
T cd04177 151 NVDEVFIDLVRQ 162 (168)
T ss_pred CHHHHHHHHHHH
Confidence 999999999853
No 163
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.81 E-value=2.8e-19 Score=168.55 Aligned_cols=151 Identities=23% Similarity=0.298 Sum_probs=105.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILV 572 (732)
+|+++|++|+|||||+++|+...... ...|.++....+.+ ..+.+.||||||++.|...+..++..+|++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~---~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT---TIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEE
Confidence 58999999999999999999876321 12233333333332 346899999999999988888888999999999
Q ss_pred EEecCCC-ChhhHHHHH----HHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHH
Q 004746 573 VAADDGI-RPQTNEAIA----HAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (732)
Q Consensus 573 VDasdgi-~~qt~EiL~----~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGId 646 (732)
||+++.. ..+...++. .....+.|+++|+||+|+.... .+++.+.+...... ...++++++||++|.|++
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~ 149 (158)
T cd00878 74 VDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKIL----GRRWHIQPCSAVTGDGLD 149 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhcc----CCcEEEEEeeCCCCCCHH
Confidence 9999752 111222222 2223578999999999986543 33333333221111 124689999999999999
Q ss_pred HHHHHHHH
Q 004746 647 DLLETIML 654 (732)
Q Consensus 647 eLfe~Ii~ 654 (732)
++|++|..
T Consensus 150 ~~~~~l~~ 157 (158)
T cd00878 150 EGLDWLLQ 157 (158)
T ss_pred HHHHHHhh
Confidence 99999864
No 164
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.81 E-value=2.6e-19 Score=174.63 Aligned_cols=143 Identities=22% Similarity=0.376 Sum_probs=105.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch------hhcccc--
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA------MRARGA-- 563 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~------~r~r~~-- 563 (732)
++|+++|.||+|||||+|+|++.+..++..+|+|.+.....+.+ .+..+.|+|+||...+.. ....++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~----~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL----GDQQVELVDLPGIYSLSSKSEEERVARDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE----TTEEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe----cCceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence 57999999999999999999999988999999999876666554 236899999999433321 122333
Q ss_pred cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC-----ChHHHHHHHHHcCCCCCCCCCCCCEEEEe
Q 004746 564 RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-----NPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (732)
Q Consensus 564 ~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a-----~~erv~~eL~elgl~~e~~gg~ipiVeVS 638 (732)
...|++|+|+|+++ .....+++.++...++|+|+|+||+|+... +.+.+.+.+ .++++++|
T Consensus 77 ~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L------------g~pvi~~s 142 (156)
T PF02421_consen 77 EKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERL------------GVPVIPVS 142 (156)
T ss_dssp TSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH------------TS-EEEEB
T ss_pred cCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHh------------CCCEEEEE
Confidence 67999999999986 355567778888899999999999997321 222222222 37899999
Q ss_pred cCCCCCHHHHHHHH
Q 004746 639 ALKGEKVDDLLETI 652 (732)
Q Consensus 639 AKtGeGIdeLfe~I 652 (732)
|++|+|+++|+++|
T Consensus 143 a~~~~g~~~L~~~I 156 (156)
T PF02421_consen 143 ARTGEGIDELKDAI 156 (156)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred eCCCcCHHHHHhhC
Confidence 99999999999876
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=4e-19 Score=199.62 Aligned_cols=161 Identities=24% Similarity=0.386 Sum_probs=120.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc----------cccch
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EAFGA 557 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh----------E~f~~ 557 (732)
...++|+|+|++|||||||+|+|++..+ ..+..+|+|++.....+. +++ ..+.||||||. +.|..
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~--~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~ 284 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIE--LGG--KTWRFVDTAGLRRRVKQASGHEYYAS 284 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEE--ECC--EEEEEEECCCccccccccchHHHHHH
Confidence 3568999999999999999999998765 467788999876433333 344 46789999994 34444
Q ss_pred hhc-ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChH-HHHHHHHHcCCCCCCCCCCCCEE
Q 004746 558 MRA-RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMV 635 (732)
Q Consensus 558 ~r~-r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~e-rv~~eL~elgl~~e~~gg~ipiV 635 (732)
++. .+++.+|++|+|+|++++...++..++..+...++|+|+|+||+|+...... ....++.. .+... ..++++
T Consensus 285 ~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~-~l~~~---~~~~~~ 360 (472)
T PRK03003 285 LRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDR-ELAQV---PWAPRV 360 (472)
T ss_pred HHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHH-hcccC---CCCCEE
Confidence 433 3468999999999999999999988888888889999999999999653221 12222222 11111 136899
Q ss_pred EEecCCCCCHHHHHHHHHHHHh
Q 004746 636 QISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 636 eVSAKtGeGIdeLfe~Ii~lae 657 (732)
++||++|.||+++|+.|..+.+
T Consensus 361 ~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 361 NISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 166
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.80 E-value=4e-19 Score=195.63 Aligned_cols=161 Identities=29% Similarity=0.389 Sum_probs=121.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch----------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA---------- 557 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~---------- 557 (732)
...++|+|+|++|+|||||+|+|++... ...+.+++|++.....+. .++ ..+.||||||+..+..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~--~~~--~~~~liDT~G~~~~~~~~~~~e~~~~ 245 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFE--RNG--KKYLLIDTAGIRRKGKVTEGVEKYSV 245 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEE--ECC--cEEEEEECCCccccccchhhHHHHHH
Confidence 3567999999999999999999997654 467788999875333333 333 4799999999754332
Q ss_pred hh-cccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC-C-ChHHHHHHHHHcCCCCCCCCCCCCE
Q 004746 558 MR-ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG-A-NPERVMQELSSIGLMPEDWGGDIPM 634 (732)
Q Consensus 558 ~r-~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~-a-~~erv~~eL~elgl~~e~~gg~ipi 634 (732)
++ ..+++.+|++|+|+|++++...++.+++.++...++|+|+|+||+|+.. . ..+.+...+... +.. ...+++
T Consensus 246 ~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~-~~~---~~~~~v 321 (429)
T TIGR03594 246 LRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRK-LPF---LDFAPI 321 (429)
T ss_pred HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHh-ccc---CCCCce
Confidence 22 2356899999999999999999999999888888999999999999962 1 122333333321 111 124789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHh
Q 004746 635 VQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~lae 657 (732)
+++||++|.|++++|++|....+
T Consensus 322 i~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 322 VFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987654
No 167
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.80 E-value=8.1e-19 Score=168.14 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=108.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
.+|+|+|+.|+|||||+++|....+... .+.+..+ +.+...+++..+.+.||||||++.+...+..++..+|+++|
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~il 76 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPE---ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICL 76 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccc---eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEE
Confidence 3799999999999999999998877533 2222211 22333445677899999999998887777777899999999
Q ss_pred EEEecCCCChhhH--HHHHHHH--hcCCCEEEEEeCCCCCCCChH----HHHHHHH-HcCCCCCCCCCCCCEEEEecCCC
Q 004746 572 VVAADDGIRPQTN--EAIAHAK--AAGVPIVIAINKIDKDGANPE----RVMQELS-SIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 572 VVDasdgi~~qt~--EiL~~ak--~~~vPIIVViNKiDL~~a~~e----rv~~eL~-elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|||+++....+.. .++..++ ..++|+++|+||+|+.+.... .....+. ... ...+++++||++|
T Consensus 77 v~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~~e~Sa~~~ 149 (166)
T cd01893 77 VYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFR-------EIETCVECSAKTL 149 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHh-------cccEEEEeccccc
Confidence 9999875444332 1223332 237899999999999653321 1111111 111 1136999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.|++++|+.+....
T Consensus 150 ~~v~~lf~~~~~~~ 163 (166)
T cd01893 150 INVSEVFYYAQKAV 163 (166)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999987653
No 168
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.80 E-value=5e-19 Score=165.46 Aligned_cols=147 Identities=25% Similarity=0.355 Sum_probs=108.0
Q ss_pred EEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh------hcccc--cccC
Q 004746 496 IMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM------RARGA--RVTD 567 (732)
Q Consensus 496 IVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~------r~r~~--~~AD 567 (732)
|+|++|+|||||+++|.+..+...+.+++|.+.....+.+ ++ ..+.||||||++.|..+ +..++ ..+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d 76 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL--GG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPD 76 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee--CC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCc
Confidence 5899999999999999988766677788888765544443 33 57999999999877643 33444 4899
Q ss_pred eEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHH
Q 004746 568 IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (732)
Q Consensus 568 iVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGId 646 (732)
++|+|+|+++. ......+.++...++|+|+|+||+|+.... .......+... .+++++++||++|.|++
T Consensus 77 ~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~iSa~~~~~~~ 146 (158)
T cd01879 77 LIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSEL--------LGVPVVPTSARKGEGID 146 (158)
T ss_pred EEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHh--------hCCCeEEEEccCCCCHH
Confidence 99999999863 233445556666789999999999996532 11112222221 12579999999999999
Q ss_pred HHHHHHHHHH
Q 004746 647 DLLETIMLVA 656 (732)
Q Consensus 647 eLfe~Ii~la 656 (732)
+++++|....
T Consensus 147 ~l~~~l~~~~ 156 (158)
T cd01879 147 ELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHh
Confidence 9999998653
No 169
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.6e-19 Score=177.22 Aligned_cols=154 Identities=21% Similarity=0.189 Sum_probs=124.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
-+|+.+||+.+||||+||-+++..+|..... .|+++.+..-.+.++++.+++++|||+|||.|...+..||+.|.++|
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd--~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD--LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc--ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 4689999999999999999999988875444 57777777777778999999999999999999999999999999999
Q ss_pred EEEEecCCCC----hhhHHHHHHHHhcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 571 IVVAADDGIR----PQTNEAIAHAKAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 571 LVVDasdgi~----~qt~EiL~~ak~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
||||++.... .++++-+++....+.-|++++||+||.. ...++-.....++++ .|+++||++++
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL---------ifmETSakt~~ 154 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL---------IFMETSAKTAE 154 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc---------eeehhhhhhhh
Confidence 9999997433 2333333444345777999999999954 234455555555654 58899999999
Q ss_pred CHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLV 655 (732)
Q Consensus 644 GIdeLfe~Ii~l 655 (732)
||++.|..+...
T Consensus 155 ~VEEaF~nta~~ 166 (216)
T KOG0098|consen 155 NVEEAFINTAKE 166 (216)
T ss_pred hHHHHHHHHHHH
Confidence 999999888753
No 170
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.80 E-value=5.8e-19 Score=175.04 Aligned_cols=158 Identities=25% Similarity=0.252 Sum_probs=109.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILV 572 (732)
+|+|+|++|+|||||+++|+...+...+. .++.+ .+...+.+.+..+.++||||||++.|..++..++..+|++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~-~t~~~--~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv 77 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYR-RTVEE--MHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCC-Cchhh--heeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEE
Confidence 58999999999999999999877653322 22222 3334444566667899999999999998888899999999999
Q ss_pred EEecCCCChhhH-H----HHHHHHhcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHH
Q 004746 573 VAADDGIRPQTN-E----AIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (732)
Q Consensus 573 VDasdgi~~qt~-E----iL~~ak~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGId 646 (732)
||+++....+.. . ++......++|+|+|+||+|+..... ........... .. ...+++++||++|.||+
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~---~~--~~~~~~~~Sa~~g~gv~ 152 (198)
T cd04147 78 YAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE---LD--WNCGFVETSAKDNENVL 152 (198)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH---hh--cCCcEEEecCCCCCCHH
Confidence 999874333222 1 22222224799999999999854211 11111111100 01 13579999999999999
Q ss_pred HHHHHHHHHHhh
Q 004746 647 DLLETIMLVAEL 658 (732)
Q Consensus 647 eLfe~Ii~lael 658 (732)
++|++|......
T Consensus 153 ~l~~~l~~~~~~ 164 (198)
T cd04147 153 EVFKELLRQANL 164 (198)
T ss_pred HHHHHHHHHhhc
Confidence 999999876543
No 171
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.80 E-value=5.9e-19 Score=171.11 Aligned_cols=153 Identities=23% Similarity=0.260 Sum_probs=107.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
...+|+++|++|+|||||+++|....+.. .. .|.+.....+. + ....+.||||||++.|...+..+++.+|++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~--~t~~~~~~~~~--~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 86 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TS--PTIGSNVEEIV--Y--KNIRFLMWDIGGQESLRSSWNTYYTNTDAV 86 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cC--CccccceEEEE--E--CCeEEEEEECCCCHHHHHHHHHHhhcCCEE
Confidence 35799999999999999999998776643 22 24333333322 2 356899999999999998888889999999
Q ss_pred EEEEEecCCCChh-hHHHHH-HHH---hcCCCEEEEEeCCCCCCC-ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 570 VIVVAADDGIRPQ-TNEAIA-HAK---AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 570 ILVVDasdgi~~q-t~EiL~-~ak---~~~vPIIVViNKiDL~~a-~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
|||+|+++..... ..+.+. .+. ..++|+++++||+|+.+. +.+++.+.+..... .. ..+++++|||++|.
T Consensus 87 i~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~--~~--~~~~~~~~SA~~g~ 162 (174)
T cd04153 87 ILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSI--RD--HTWHIQGCCALTGE 162 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccc--cC--CceEEEecccCCCC
Confidence 9999998753221 112222 222 236899999999999653 33333333321111 11 23579999999999
Q ss_pred CHHHHHHHHH
Q 004746 644 KVDDLLETIM 653 (732)
Q Consensus 644 GIdeLfe~Ii 653 (732)
||+++|++|.
T Consensus 163 gi~e~~~~l~ 172 (174)
T cd04153 163 GLPEGLDWIA 172 (174)
T ss_pred CHHHHHHHHh
Confidence 9999999986
No 172
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.80 E-value=9.5e-19 Score=179.10 Aligned_cols=160 Identities=18% Similarity=0.253 Sum_probs=112.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
.+|+|+|+.++|||||+.+|....+...+.+.+ . ..|...+.+++..+.+.||||+|++.|..++..++..+|++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi--~-~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~ill 78 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTV--F-ENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLI 78 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCcc--c-cceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEE
Confidence 589999999999999999999888765555533 2 2334556678888999999999999999999999999999999
Q ss_pred EEEecCCCChhhH-HHH-HHHH--hcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCC---------CCCCCCCCEEEEe
Q 004746 572 VVAADDGIRPQTN-EAI-AHAK--AAGVPIVIAINKIDKDGANPERVMQELSSIGLMP---------EDWGGDIPMVQIS 638 (732)
Q Consensus 572 VVDasdgi~~qt~-EiL-~~ak--~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~---------e~~gg~ipiVeVS 638 (732)
|||+++....+.. +.| ..+. ..++|+|+|+||+|+.... .....+.+....+ ..-.+.++|++||
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~--~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~S 156 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL--ATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECS 156 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch--hhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcC
Confidence 9999985333222 112 1221 2478999999999995421 0011111000000 0001234899999
Q ss_pred cCCCCC-HHHHHHHHHHHH
Q 004746 639 ALKGEK-VDDLLETIMLVA 656 (732)
Q Consensus 639 AKtGeG-IdeLfe~Ii~la 656 (732)
|++++| |+++|+.....+
T Consensus 157 Ak~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 157 SRSSERSVRDVFHVATVAS 175 (222)
T ss_pred CCcCCcCHHHHHHHHHHHH
Confidence 999995 999999988754
No 173
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.80 E-value=6.2e-19 Score=167.93 Aligned_cols=151 Identities=20% Similarity=0.238 Sum_probs=104.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc-cchhhcccccccCeEEE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-FGAMRARGARVTDIAVI 571 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~-f~~~r~r~~~~ADiVIL 571 (732)
+|+|+|++|+|||||+++|+...+...+.+ ++.. .+...+.+++..+.+.||||||++. +..+...+++.+|++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 77 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDP-NLES--LYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVL 77 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCC-ChHH--hceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEE
Confidence 589999999999999999997666433333 2222 2233444577778899999999985 34556677899999999
Q ss_pred EEEecCCCChhh----HHHHHHHH--hcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 572 VVAADDGIRPQT----NEAIAHAK--AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 572 VVDasdgi~~qt----~EiL~~ak--~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|+|+++....+. .+.+.... ..++|+|+|+||+|+... ..+......... .++|+++||++|
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~e~Sa~~~ 148 (165)
T cd04146 78 VYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASEL---------GCLFFEVSAAED 148 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHc---------CCEEEEeCCCCC
Confidence 999997543332 22222222 237899999999998432 222222222222 257999999999
Q ss_pred -CCHHHHHHHHHHH
Q 004746 643 -EKVDDLLETIMLV 655 (732)
Q Consensus 643 -eGIdeLfe~Ii~l 655 (732)
.||+++|+.|...
T Consensus 149 ~~~v~~~f~~l~~~ 162 (165)
T cd04146 149 YDGVHSVFHELCRE 162 (165)
T ss_pred chhHHHHHHHHHHH
Confidence 5999999999854
No 174
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=1.5e-18 Score=163.00 Aligned_cols=157 Identities=24% Similarity=0.335 Sum_probs=112.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcccc----------chh
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF----------GAM 558 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f----------~~~ 558 (732)
++++|+++|++|+|||||+++|++.... ....+++|+......+. .+ +..+.||||||+... ..+
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~ 76 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFE--YD--GKKYTLIDTAGIRRKGKVEEGIEKYSVL 76 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEE--EC--CeeEEEEECCCCccccchhccHHHHHHH
Confidence 3578999999999999999999987643 45566666654322222 23 346899999996433 111
Q ss_pred h-cccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC---hHHHHHHHHHcCCCCCCCCCCCCE
Q 004746 559 R-ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPM 634 (732)
Q Consensus 559 r-~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~---~erv~~eL~elgl~~e~~gg~ipi 634 (732)
. ...+..+|++|+|+|+++....+...++..+...+.|+++++||+|+.... .+.+.+.+... +. . ....++
T Consensus 77 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~--~-~~~~~~ 152 (174)
T cd01895 77 RTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRK-LP--F-LDYAPI 152 (174)
T ss_pred HHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhh-cc--c-ccCCce
Confidence 1 234578999999999999888777777777777789999999999996542 22233333321 11 0 123689
Q ss_pred EEEecCCCCCHHHHHHHHHH
Q 004746 635 VQISALKGEKVDDLLETIML 654 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~ 654 (732)
+++||++++|++++++++..
T Consensus 153 ~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 153 VFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred EEEeccCCCCHHHHHHHHHH
Confidence 99999999999999999875
No 175
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.80 E-value=9.8e-19 Score=171.88 Aligned_cols=156 Identities=18% Similarity=0.189 Sum_probs=107.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
++.++|+++|++|+|||||++++....+.. ..+ |.......+. ...+.+.||||||++.|..++..+++.+|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~--T~~~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ 87 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIP--TIGFNVETVE----YKNLKFTMWDVGGQDKLRPLWRHYYQNTNG 87 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCC--ccccceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence 445899999999999999999998666542 222 4333333222 345789999999999999999999999999
Q ss_pred EEEEEEecCCCC-hhhHHHHHHH-H---hcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIR-PQTNEAIAHA-K---AAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~-~qt~EiL~~a-k---~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|+|||+++... ....+.+..+ . ..+.|+|||+||+|+.+... +++... +++.. .....+.++++||++|
T Consensus 88 iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~---l~~~~-~~~~~~~~~~~Sa~tg 163 (182)
T PTZ00133 88 LIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEK---LGLHS-VRQRNWYIQGCCATTA 163 (182)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHH---hCCCc-ccCCcEEEEeeeCCCC
Confidence 999999986321 1112222222 2 13689999999999965432 322222 22210 0112345779999999
Q ss_pred CCHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLV 655 (732)
Q Consensus 643 eGIdeLfe~Ii~l 655 (732)
.|++++|++|...
T Consensus 164 ~gv~e~~~~l~~~ 176 (182)
T PTZ00133 164 QGLYEGLDWLSAN 176 (182)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999853
No 176
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.80 E-value=6.8e-19 Score=162.57 Aligned_cols=151 Identities=23% Similarity=0.306 Sum_probs=106.7
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEEE
Q 004746 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVV 573 (732)
Q Consensus 494 VaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVV 573 (732)
|+|+|++|+|||||+++|.+..+.....+ |..+....+. . ..+.+.+|||||++.|..++..++..+|++++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 75 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVT--K--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVV 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEE--E--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEE
Confidence 79999999999999999998877655544 3333333332 2 2378999999999999998889999999999999
Q ss_pred EecCCCC-hhhHHHHHHH----HhcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 574 AADDGIR-PQTNEAIAHA----KAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 574 Dasdgi~-~qt~EiL~~a----k~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
|+++... .+..+.+..+ ...++|+++|+||+|+..... ..... ..++... ....++++++||++|.|+++
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~Sa~~~~gi~~ 151 (159)
T cd04159 76 DAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIE---QMNLKSI-TDREVSCYSISCKEKTNIDI 151 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHH---HhCcccc-cCCceEEEEEEeccCCChHH
Confidence 9986322 1222222222 124789999999999865432 22222 2221111 12246799999999999999
Q ss_pred HHHHHHH
Q 004746 648 LLETIML 654 (732)
Q Consensus 648 Lfe~Ii~ 654 (732)
++++|..
T Consensus 152 l~~~l~~ 158 (159)
T cd04159 152 VLDWLIK 158 (159)
T ss_pred HHHHHhh
Confidence 9999864
No 177
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.80 E-value=1.1e-18 Score=165.76 Aligned_cols=153 Identities=24% Similarity=0.232 Sum_probs=102.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc----cchhhc---ccccc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA----FGAMRA---RGARV 565 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~----f~~~r~---r~~~~ 565 (732)
+|+|+|++|||||||+++|.+....+...+++|++.....+.+ .+ ...+.||||||+.+ +..+.. +.+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~--~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRV--DD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEc--CC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 5899999999999999999987766566666776654443332 22 24799999999632 111222 23456
Q ss_pred cCeEEEEEEecCC-CChhh-HHHHHHHHh-----cCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEE
Q 004746 566 TDIAVIVVAADDG-IRPQT-NEAIAHAKA-----AGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQI 637 (732)
Q Consensus 566 ADiVILVVDasdg-i~~qt-~EiL~~ak~-----~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeV 637 (732)
+|++|+|+|+++. ...+. ..+++.+.. .++|+++|+||+|+..... ......+.... ...+++++
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~ 151 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL-------WGKPVFPI 151 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC-------CCCCEEEE
Confidence 9999999999976 22222 233333332 3689999999999854322 22222222110 13579999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 004746 638 SALKGEKVDDLLETIMLV 655 (732)
Q Consensus 638 SAKtGeGIdeLfe~Ii~l 655 (732)
||+++.|+++++++|..+
T Consensus 152 Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 152 SALTGEGLDELLRKLAEL 169 (170)
T ss_pred ecCCCCCHHHHHHHHHhh
Confidence 999999999999998753
No 178
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.80 E-value=1.2e-18 Score=168.19 Aligned_cols=158 Identities=17% Similarity=0.231 Sum_probs=111.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
.+|+|+|++|+|||||+++|....+.....+.+. .. +...+.+++..+.+.||||||++.|..++..++..+|++|+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~-~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIE-NT--FSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYIL 78 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchh-hh--EEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEE
Confidence 5899999999999999999998776544444221 11 12233345666789999999999999888888999999999
Q ss_pred EEEecCCCChhhH-----HHHHHHHhcCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 572 VVAADDGIRPQTN-----EAIAHAKAAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 572 VVDasdgi~~qt~-----EiL~~ak~~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
|||+++....+.. .+++.....+.|+|+|+||+|+.... .......+.. .+ ..+++++||++|.|
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 150 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE------SW--GAAFLESSARENEN 150 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH------Hc--CCeEEEEeCCCCCC
Confidence 9999975332222 22222222467999999999985321 1111122221 11 25799999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 004746 645 VDDLLETIMLVAELQE 660 (732)
Q Consensus 645 IdeLfe~Ii~lael~~ 660 (732)
+++++++|........
T Consensus 151 v~~l~~~l~~~~~~~~ 166 (180)
T cd04137 151 VEEAFELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999997665433
No 179
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.79 E-value=1.7e-18 Score=163.59 Aligned_cols=153 Identities=26% Similarity=0.401 Sum_probs=117.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILV 572 (732)
||+|+|+.++|||||+++|.+..+...+.+ |.+...+...+.+++..+.+.|||++|++.|..++...+..+|++|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~ 78 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIP--TIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIV 78 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSET--TSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccc--cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999998877654444 444556667777788889999999999999998888889999999999
Q ss_pred EEecCCCCh----hhHHHHHHHHhcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 573 VAADDGIRP----QTNEAIAHAKAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 573 VDasdgi~~----qt~EiL~~ak~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
||.++.... .+...+......+.|++|++||+|+.. ...++......+++ ++|+++||+++.||
T Consensus 79 fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~---------~~~~e~Sa~~~~~v 149 (162)
T PF00071_consen 79 FDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG---------VPYFEVSAKNGENV 149 (162)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT---------SEEEEEBTTTTTTH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC---------CEEEEEECCCCCCH
Confidence 999874222 222222223233578999999999864 23333443444432 68999999999999
Q ss_pred HHHHHHHHHHH
Q 004746 646 DDLLETIMLVA 656 (732)
Q Consensus 646 deLfe~Ii~la 656 (732)
.++|..++...
T Consensus 150 ~~~f~~~i~~i 160 (162)
T PF00071_consen 150 KEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 180
>PLN03108 Rab family protein; Provisional
Probab=99.79 E-value=1.8e-18 Score=173.85 Aligned_cols=155 Identities=19% Similarity=0.151 Sum_probs=113.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+|+|++|+|||||+++|....+.....+ |....+....+.+++..+.+.||||+|++.|..++..++..+|++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~--ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--CccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 47999999999999999999998877654443 3333333344455677788999999999999988888899999999
Q ss_pred EEEEecCCCChhhH-HHHHHHH---hcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 571 IVVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 571 LVVDasdgi~~qt~-EiL~~ak---~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
+|||+++....+.. +++..+. ..++|+|+|+||+|+... ..+...+....+ .++++++||++|.
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~ 154 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH---------GLIFMEASAKTAQ 154 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCC
Confidence 99999874433322 2222222 236899999999998642 222222233222 2579999999999
Q ss_pred CHHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLVA 656 (732)
Q Consensus 644 GIdeLfe~Ii~la 656 (732)
||+++|++++...
T Consensus 155 ~v~e~f~~l~~~~ 167 (210)
T PLN03108 155 NVEEAFIKTAAKI 167 (210)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998644
No 181
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.79 E-value=1.3e-18 Score=177.69 Aligned_cols=158 Identities=19% Similarity=0.201 Sum_probs=109.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|.+++|||||+++|+...+.. .. .|....++...+ ..+.+.||||||++.|..++..+++.+|++||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~--~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TV--STVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CC--CccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEE
Confidence 479999999999999999999888753 22 244443333322 45689999999999999999999999999999
Q ss_pred EEEecCCCChhhH-HHHHHHH---hcCCCEEEEEeCCCCCCC----------------------ChHHHHHHHHHcCCC-
Q 004746 572 VVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGA----------------------NPERVMQELSSIGLM- 624 (732)
Q Consensus 572 VVDasdgi~~qt~-EiL~~ak---~~~vPIIVViNKiDL~~a----------------------~~erv~~eL~elgl~- 624 (732)
|||+++....+.. +++..+. ..++|+|+|+||+|+... ..++......+++..
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~ 153 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYK 153 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccc
Confidence 9999985433332 2222222 246899999999998541 112222222222200
Q ss_pred --CCCC--CCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 625 --PEDW--GGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 625 --~e~~--gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
-++. ...++|++|||++|.||+++|+.|+...
T Consensus 154 ~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 154 MLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred cccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0000 1136899999999999999999998644
No 182
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.79 E-value=1.3e-18 Score=170.86 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=111.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|.+|+|||||+++|....+... ..|.+...+.+.+ .++.+.+|||||++.+..++..++..+|+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~---~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ 87 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH---QPTQHPTSEELAI----GNIKFTTFDLGGHQQARRLWKDYFPEVNG 87 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc---CCccccceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 5668999999999999999999998765421 2244443333332 34789999999999998888899999999
Q ss_pred EEEEEEecCCCCh-hhHHHHHHH----HhcCCCEEEEEeCCCCCCC-ChHHHHHHHHHcCCCC---CCCCCCCCEEEEec
Q 004746 569 AVIVVAADDGIRP-QTNEAIAHA----KAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMP---EDWGGDIPMVQISA 639 (732)
Q Consensus 569 VILVVDasdgi~~-qt~EiL~~a----k~~~vPIIVViNKiDL~~a-~~erv~~eL~elgl~~---e~~gg~ipiVeVSA 639 (732)
+|+|+|+++.... ...+.+..+ ...++|+++|+||+|+... +.+++...+.-..... ........+++|||
T Consensus 88 ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 88 IVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 9999999874221 122222222 2257899999999999654 4444444432111100 01113457999999
Q ss_pred CCCCCHHHHHHHHHH
Q 004746 640 LKGEKVDDLLETIML 654 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~ 654 (732)
++|.|++++++||..
T Consensus 168 ~~~~g~~~~~~wl~~ 182 (184)
T smart00178 168 VRRMGYGEGFKWLSQ 182 (184)
T ss_pred ccCCChHHHHHHHHh
Confidence 999999999999974
No 183
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.79 E-value=1.4e-18 Score=167.65 Aligned_cols=153 Identities=23% Similarity=0.241 Sum_probs=106.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILV 572 (732)
+|+++|.+++|||||+++|.+. +.... ..|.+.... .+. ...+.++||||||++.|..++..++..+|++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~--~~t~g~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKV--APTVGFTPT--KLR--LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccc--cCcccceEE--EEE--ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEE
Confidence 4899999999999999999865 32222 224333222 222 2457899999999999999999999999999999
Q ss_pred EEecCCCChh-hHHHHHHHHh----cCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC----
Q 004746 573 VAADDGIRPQ-TNEAIAHAKA----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG---- 642 (732)
Q Consensus 573 VDasdgi~~q-t~EiL~~ak~----~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG---- 642 (732)
||+++....+ ...++..+.. .++|+++|+||+|+.+.. ..++...+.-..+. ......+.+++|||++|
T Consensus 74 ~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~-~~~~~~~~~~~~Sa~~g~~~~ 152 (167)
T cd04161 74 VDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLV-NENKSLCHIEPCSAIEGLGKK 152 (167)
T ss_pred EECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCccccc-CCCCceEEEEEeEceeCCCCc
Confidence 9998753222 2333333322 478999999999997654 44444433211221 11223467889999998
Q ss_pred --CCHHHHHHHHH
Q 004746 643 --EKVDDLLETIM 653 (732)
Q Consensus 643 --eGIdeLfe~Ii 653 (732)
.||++.|+||.
T Consensus 153 ~~~g~~~~~~wl~ 165 (167)
T cd04161 153 IDPSIVEGLRWLL 165 (167)
T ss_pred cccCHHHHHHHHh
Confidence 89999999986
No 184
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.79 E-value=9e-19 Score=179.30 Aligned_cols=162 Identities=27% Similarity=0.384 Sum_probs=116.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCcccc--------------ccCCceeeeeeEEEEee--------------------cC
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAA--------------EAGGITQGIGAYKVQVP--------------------VD 538 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vs--------------e~~GtTrdI~~y~v~i~--------------------id 538 (732)
+|+++|+.++|||||+++|....+..+ ...|+|..+....+.+. +.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999986544321 11344432222111111 11
Q ss_pred CcceeEEEEeCCCccccchhhccccc--ccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC-ChHHHH
Q 004746 539 GKLQPCVFLDTPGHEAFGAMRARGAR--VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPERVM 615 (732)
Q Consensus 539 gk~i~ItLIDTPGhE~f~~~r~r~~~--~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a-~~erv~ 615 (732)
..+..++|+|||||+.|.....+++. .+|++++|+|++++...++.+++.++...++|+|+|+||+|+... ......
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~ 160 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETL 160 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHH
Confidence 23467999999999999877776664 799999999999999999999999999999999999999998542 223333
Q ss_pred HHHHHc-C---CC-----------------CCCCCCCCCEEEEecCCCCCHHHHHHHHHH
Q 004746 616 QELSSI-G---LM-----------------PEDWGGDIPMVQISALKGEKVDDLLETIML 654 (732)
Q Consensus 616 ~eL~el-g---l~-----------------~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~ 654 (732)
.++... . .. ...|...+++|.+||.+|+|+++|++.|..
T Consensus 161 ~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 161 KDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 333321 1 10 013445679999999999999999988764
No 185
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.79 E-value=1.4e-18 Score=162.03 Aligned_cols=150 Identities=22% Similarity=0.288 Sum_probs=107.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILV 572 (732)
+|+|+|++|+|||||+++|+...+.....+ ++. ..+...+.+++..+.+.+||+||++.+..++...+..+|++++|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 77 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDP-TIE--DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILV 77 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCC-Chh--HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEE
Confidence 589999999999999999997765443333 333 23344444556668899999999999998888889999999999
Q ss_pred EEecCCCChh-hHHHHHHHH----hcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 573 VAADDGIRPQ-TNEAIAHAK----AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 573 VDasdgi~~q-t~EiL~~ak----~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
+|.++..... ...++..+. ..+.|+++|+||+|+... ..+.........+ ++++++||++|.|
T Consensus 78 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~~ 148 (160)
T cd00876 78 YSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG---------CPFIETSAKDNIN 148 (160)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC---------CcEEEeccCCCCC
Confidence 9998743211 122222222 136899999999998652 2222223333222 5799999999999
Q ss_pred HHHHHHHHHH
Q 004746 645 VDDLLETIML 654 (732)
Q Consensus 645 IdeLfe~Ii~ 654 (732)
+++++++|..
T Consensus 149 i~~l~~~l~~ 158 (160)
T cd00876 149 IDEVFKLLVR 158 (160)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 186
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=1.5e-18 Score=194.89 Aligned_cols=153 Identities=25% Similarity=0.413 Sum_probs=116.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc--------cchhhc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--------FGAMRA 560 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~--------f~~~r~ 560 (732)
..++|+|+|++|||||||+|+|++... .....+|+|++...+.+. ++ +..+.||||||++. |.....
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~--~~--~~~~~l~DT~G~~~~~~~~~~~~~~~~~ 112 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAE--WN--GRRFTVVDTGGWEPDAKGLQASVAEQAE 112 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEE--EC--CcEEEEEeCCCcCCcchhHHHHHHHHHH
Confidence 458999999999999999999998764 366788899886554443 23 34699999999763 223344
Q ss_pred ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
.++..+|++|||||++++......+++..++..++|+|+|+||+|+.....+ ..++...++ -..++|||+
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~--~~~~~~~g~--------~~~~~iSA~ 182 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD--AAALWSLGL--------GEPHPVSAL 182 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh--hHHHHhcCC--------CCeEEEEcC
Confidence 5678999999999999988877778888888889999999999998643221 122222222 135799999
Q ss_pred CCCCHHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLVA 656 (732)
Q Consensus 641 tGeGIdeLfe~Ii~la 656 (732)
+|.||++|+++|....
T Consensus 183 ~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 183 HGRGVGDLLDAVLAAL 198 (472)
T ss_pred CCCCcHHHHHHHHhhc
Confidence 9999999999998653
No 187
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.79 E-value=4.3e-19 Score=179.86 Aligned_cols=147 Identities=31% Similarity=0.504 Sum_probs=109.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCC-------------------------------ccccccCCceeeeeeEEEEeecCCcc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTK-------------------------------VAAAEAGGITQGIGAYKVQVPVDGKL 541 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k-------------------------------~~vse~~GtTrdI~~y~v~i~idgk~ 541 (732)
+|+|+||+++|||||+++|+... .......|+|++...+.+.. .+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~----~~ 76 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET----EK 76 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee----CC
Confidence 58999999999999999996310 00123568888876666543 45
Q ss_pred eeEEEEeCCCccccchhhcccccccCeEEEEEEecC-------CCChhhHHHHHHHHhcC-CCEEEEEeCCCCCCC--C-
Q 004746 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD-------GIRPQTNEAIAHAKAAG-VPIVIAINKIDKDGA--N- 610 (732)
Q Consensus 542 i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasd-------gi~~qt~EiL~~ak~~~-vPIIVViNKiDL~~a--~- 610 (732)
+.++|||||||..|...+..++..+|++|+|+|+++ +...++.+++..+...+ .|+|+|+||+|+... +
T Consensus 77 ~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 77 YRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred eEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccH
Confidence 789999999999998877788899999999999998 45667888777776666 579999999999732 2
Q ss_pred --hHHHHHHH----HHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 611 --PERVMQEL----SSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 611 --~erv~~eL----~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
.+.+...+ ...++.. ..+++++|||++|.||++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~----~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNP----KDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCc----CCceEEEeecCcCCCCCc
Confidence 22333332 2222211 247899999999999973
No 188
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.79 E-value=3e-18 Score=171.39 Aligned_cols=152 Identities=19% Similarity=0.216 Sum_probs=102.2
Q ss_pred CEEEEEeCCCCCHHHHHH-HHHcCCc-----cccccCCceee-eeeEEEE--------eecCCcceeEEEEeCCCccccc
Q 004746 492 PVLTIMGHVDHGKTTLLD-HIRKTKV-----AAAEAGGITQG-IGAYKVQ--------VPVDGKLQPCVFLDTPGHEAFG 556 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLn-rLl~~k~-----~vse~~GtTrd-I~~y~v~--------i~idgk~i~ItLIDTPGhE~f~ 556 (732)
++|+++|+.+||||||+. ++.+..+ ...+.+ |.. ++.|... ..+++..+.+.||||+|++.+
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~p--Ti~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVP--TVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCC--ceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh-
Confidence 689999999999999996 5554333 222223 332 1223222 135778899999999998763
Q ss_pred hhhcccccccCeEEEEEEecCCCChhhHH--HHHHHHh--cCCCEEEEEeCCCCCCCC---------------------h
Q 004746 557 AMRARGARVTDIAVIVVAADDGIRPQTNE--AIAHAKA--AGVPIVIAINKIDKDGAN---------------------P 611 (732)
Q Consensus 557 ~~r~r~~~~ADiVILVVDasdgi~~qt~E--iL~~ak~--~~vPIIVViNKiDL~~a~---------------------~ 611 (732)
++..+++.+|++|||||+++....+..+ ++..++. .++|+|+|+||+||.... .
T Consensus 80 -~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 -DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred -hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566789999999999999865443331 3333332 368999999999985311 0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 612 erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
.+..+.+.. .+ +++|++|||++|+||+++|+.++.+
T Consensus 159 ~~e~~~~a~------~~--~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAK------EL--GIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHH------Hh--CCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 111112221 11 3589999999999999999998753
No 189
>COG1159 Era GTPase [General function prediction only]
Probab=99.79 E-value=1.1e-18 Score=183.87 Aligned_cols=156 Identities=29% Similarity=0.437 Sum_probs=118.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCC-ccc---cc----hhhc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG-HEA---FG----AMRA 560 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG-hE~---f~----~~r~ 560 (732)
+.-.|+|+|+||+|||||+|+|++.+.. ++..+.||++. +.--+..+...+.|+|||| |+. +. ....
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~----I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR----IRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhh----eeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 4457999999999999999999999876 78889999875 2222233467899999999 322 21 1222
Q ss_pred ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCCh--HHHHHHHHHcCCCCCCCCCCCCEEEEe
Q 004746 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQIS 638 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~--erv~~eL~elgl~~e~~gg~ipiVeVS 638 (732)
..+..+|+++||+|+++++...+..+++.++..+.|+|+++||+|+..... ....+.+.... ....+|++|
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~-------~f~~ivpiS 153 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL-------PFKEIVPIS 153 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhC-------CcceEEEee
Confidence 456889999999999999999999899999887789999999999855433 22333332221 124799999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 004746 639 ALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 639 AKtGeGIdeLfe~Ii~la 656 (732)
|++|.|++.|.+.|....
T Consensus 154 A~~g~n~~~L~~~i~~~L 171 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYL 171 (298)
T ss_pred ccccCCHHHHHHHHHHhC
Confidence 999999999999987543
No 190
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.79 E-value=2.7e-18 Score=159.33 Aligned_cols=146 Identities=23% Similarity=0.353 Sum_probs=107.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh--------hcc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM--------RAR 561 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~--------r~r 561 (732)
+++|+++|++|+|||||+++|.+.... ....+++|+++....+. + .+..+++|||||+..+... ...
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~ 76 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESID--I--GGIPVRLIDTAGIRETEDEIEKIGIERARE 76 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEE--e--CCEEEEEEECCCcCCCcchHHHHHHHHHHH
Confidence 468999999999999999999977653 45567777765433333 2 2467999999997665422 223
Q ss_pred cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 562 ~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
.+..+|++++|+|+++.........+.. ..+.|+|+|+||+|+...... . ......+++++||++
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-----~--------~~~~~~~~~~~Sa~~ 141 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-----L--------SLLAGKPIIAISAKT 141 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-----c--------cccCCCceEEEECCC
Confidence 5578999999999998665555554444 457999999999998653321 0 011246899999999
Q ss_pred CCCHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLV 655 (732)
Q Consensus 642 GeGIdeLfe~Ii~l 655 (732)
+.|+++|+++|...
T Consensus 142 ~~~v~~l~~~l~~~ 155 (157)
T cd04164 142 GEGLDELKEALLEL 155 (157)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998754
No 191
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=2.2e-18 Score=190.54 Aligned_cols=161 Identities=29% Similarity=0.403 Sum_probs=120.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCC-ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc----------cch
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA----------FGA 557 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k-~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~----------f~~ 557 (732)
...++|+|+|++|+|||||+|+|++.. ...++.+|+|++.....+. . .+..+.||||||+.. |..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~--~--~~~~~~lvDT~G~~~~~~~~~~~e~~~~ 246 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFE--R--DGQKYTLIDTAGIRRKGKVTEGVEKYSV 246 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEE--E--CCeeEEEEECCCCCCCcchhhHHHHHHH
Confidence 457899999999999999999999765 4577888999875322222 2 345789999999532 222
Q ss_pred hhc-ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEE
Q 004746 558 MRA-RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMV 635 (732)
Q Consensus 558 ~r~-r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiV 635 (732)
++. +++..+|++|+|+|++++...++..++.++...++|+|+|+||+|+.... ...+...+... +. +...++++
T Consensus 247 ~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~-l~---~~~~~~i~ 322 (435)
T PRK00093 247 IRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRR-LP---FLDYAPIV 322 (435)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHh-cc---cccCCCEE
Confidence 222 45688999999999999999999999988888899999999999986321 22233333221 11 11347899
Q ss_pred EEecCCCCCHHHHHHHHHHHHh
Q 004746 636 QISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 636 eVSAKtGeGIdeLfe~Ii~lae 657 (732)
++||++|.||+++++.+....+
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999876543
No 192
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.78 E-value=8.8e-18 Score=200.62 Aligned_cols=120 Identities=28% Similarity=0.399 Sum_probs=97.8
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCcc----------------ccccCCceeeeeeEEEEee------------cCC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVA----------------AAEAGGITQGIGAYKVQVP------------VDG 539 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~----------------vse~~GtTrdI~~y~v~i~------------idg 539 (732)
..+..+|+|+||+|||||||+++|+..... .....|+|.......+.+. ..+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 445679999999999999999999843211 1224466655444444432 123
Q ss_pred cceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCC
Q 004746 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD 607 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~ 607 (732)
.++.++|+|||||.+|......+++.+|++|+|+|+.+++..++..+++++...++|+|+++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999986
No 193
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.78 E-value=1.4e-18 Score=167.42 Aligned_cols=152 Identities=20% Similarity=0.237 Sum_probs=107.0
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEEE
Q 004746 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVV 573 (732)
Q Consensus 494 VaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVV 573 (732)
|+|+|+.|+|||||+++|.+..+...+.+ |.+... .. +++..+.+.||||||++.|..++..+++.+|++|+||
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~p--t~g~~~--~~--i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~ 75 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVP--TTGFNS--VA--IPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVV 75 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccc--cCCcce--EE--EeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 79999999999999999998766543333 333322 22 3455688999999999999999999999999999999
Q ss_pred EecCCCCh-hhHHHHHHHH--hcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCC------CC
Q 004746 574 AADDGIRP-QTNEAIAHAK--AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALK------GE 643 (732)
Q Consensus 574 Dasdgi~~-qt~EiL~~ak--~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKt------Ge 643 (732)
|+++.... ...+++..+. ..++|+++|+||+|+.... ...+...+....+. .. ..+.++++||++ ++
T Consensus 76 D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~-~~--~~~~~~~~Sa~~~~s~~~~~ 152 (164)
T cd04162 76 DSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIA-RG--RRWILQGTSLDDDGSPSRME 152 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhc-CC--CceEEEEeeecCCCChhHHH
Confidence 99874322 2223333332 2579999999999996543 22222222111111 11 246789999998 99
Q ss_pred CHHHHHHHHHH
Q 004746 644 KVDDLLETIML 654 (732)
Q Consensus 644 GIdeLfe~Ii~ 654 (732)
||+++|+.++.
T Consensus 153 ~v~~~~~~~~~ 163 (164)
T cd04162 153 AVKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHHhc
Confidence 99999998863
No 194
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.78 E-value=3.9e-18 Score=155.44 Aligned_cols=151 Identities=28% Similarity=0.377 Sum_probs=108.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+++|++|+|||||+++|....+...+.+++|.+...+.+. +++..+.+.+|||||+..|..++......++.+++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIE--EDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR 79 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEE--ECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence 6899999999999999999998886666777777766444343 34545789999999999998777766777777777
Q ss_pred EEEecCC-------CChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChH-HHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 572 VVAADDG-------IRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 572 VVDasdg-------i~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~e-rv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
++|.... ...+...+...+.. +.|+++++||+|+...... .....+...+ ..+++++||++|.
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--------~~~~~~~sa~~~~ 150 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAKLKTHVAFLFAKLN--------GEPIIPLSAETGK 150 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcchhhHHHHHHHhhcc--------CCceEEeecCCCC
Confidence 7777643 11222223333322 7899999999999654322 2222222221 2469999999999
Q ss_pred CHHHHHHHHH
Q 004746 644 KVDDLLETIM 653 (732)
Q Consensus 644 GIdeLfe~Ii 653 (732)
|+++++++|.
T Consensus 151 gv~~~~~~l~ 160 (161)
T TIGR00231 151 NIDSAFKIVE 160 (161)
T ss_pred CHHHHHHHhh
Confidence 9999998863
No 195
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.78 E-value=2.6e-18 Score=164.22 Aligned_cols=154 Identities=25% Similarity=0.285 Sum_probs=105.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|++|+|||||+++|.+..+.. ...|.++....+. ++ +..+.+|||||+..|..++..+++.+|++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~--~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQ--SD--GFKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEE--EC--CEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 36899999999999999999999765432 1223333333333 23 46799999999999888888888999999
Q ss_pred EEEEEecCCCCh-hhH----HHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 570 VIVVAADDGIRP-QTN----EAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 570 ILVVDasdgi~~-qt~----EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
++|+|+++.... ... ..+......++|+++++||+|+.... .+.+...+ ++... .....+++++||++|+
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l---~~~~~-~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEAL---NLHDL-RDRTWHIQACSAKTGE 161 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHc---CCccc-CCCeEEEEEeECCCCC
Confidence 999999863221 111 22222233578999999999986533 23333222 22110 1112358899999999
Q ss_pred CHHHHHHHHHH
Q 004746 644 KVDDLLETIML 654 (732)
Q Consensus 644 GIdeLfe~Ii~ 654 (732)
|++++|+||..
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 196
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=5.4e-18 Score=187.41 Aligned_cols=150 Identities=27% Similarity=0.425 Sum_probs=116.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc----c----chhhccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA----F----GAMRARG 562 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~----f----~~~r~r~ 562 (732)
++|+|+|++|||||||+|+|.+.+.. +...+++|++.....+.+ ++ +.+.||||||++. + ......+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~--~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW--LG--REFILIDTGGIEPDDDGFEKQIREQAELA 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE--CC--cEEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 68999999999999999999987653 667788998875554443 33 6899999999876 2 2223345
Q ss_pred ccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 563 ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 563 ~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+..+|++|+|+|+.++....+.+++.+++..++|+|+|+||+|+... +....++..+++ ..++++||++|
T Consensus 78 ~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~--~~~~~~~~~lg~--------~~~~~iSa~~g 147 (435)
T PRK00093 78 IEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE--EADAYEFYSLGL--------GEPYPISAEHG 147 (435)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc--hhhHHHHHhcCC--------CCCEEEEeeCC
Confidence 68999999999999988888878888888889999999999997542 222233333322 24799999999
Q ss_pred CCHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLV 655 (732)
Q Consensus 643 eGIdeLfe~Ii~l 655 (732)
.|+++|+++|...
T Consensus 148 ~gv~~l~~~I~~~ 160 (435)
T PRK00093 148 RGIGDLLDAILEE 160 (435)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999863
No 197
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.77 E-value=8.9e-18 Score=170.64 Aligned_cols=155 Identities=21% Similarity=0.231 Sum_probs=105.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccc-ccCeE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGAR-VTDIA 569 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~-~ADiV 569 (732)
++|+|+|.+|+|||||+++|....+. .... +|....++...+.+++..+.+.||||||++.+ ....++. .+|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~--~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~i 76 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYD--ASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAF 76 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcC--CCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEE
Confidence 48999999999999999999877664 2222 22222334444556677789999999999832 2334455 89999
Q ss_pred EEEEEecCCCChh-hHHHHHHHHh----cCCCEEEEEeCCCCCCCCh--HHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQ-TNEAIAHAKA----AGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~q-t~EiL~~ak~----~~vPIIVViNKiDL~~a~~--erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|||||+++..... ..+++..+.. .++|+|+|+||+|+..... ......+... ..++++++||++|
T Consensus 77 ilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~--------~~~~~~e~SA~~~ 148 (221)
T cd04148 77 VVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVV--------FDCKFIETSAGLQ 148 (221)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHH--------cCCeEEEecCCCC
Confidence 9999999853322 1223333322 4689999999999854321 1111222211 1257999999999
Q ss_pred CCHHHHHHHHHHHHhh
Q 004746 643 EKVDDLLETIMLVAEL 658 (732)
Q Consensus 643 eGIdeLfe~Ii~lael 658 (732)
.||+++|++|+.....
T Consensus 149 ~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 149 HNVDELLEGIVRQIRL 164 (221)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999876543
No 198
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.77 E-value=5.6e-18 Score=186.59 Aligned_cols=150 Identities=25% Similarity=0.429 Sum_probs=117.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcc--------ccchhhcccc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE--------AFGAMRARGA 563 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE--------~f~~~r~r~~ 563 (732)
+|+|+|++|||||||+|+|++.+.. +...+|+|++.....+.. + +..+.||||||+. .+......++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~--~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW--G--GREFILIDTGGIEEDDDGLDKQIREQAEIAI 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE--C--CeEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 4899999999999999999987653 667789998865444432 3 3479999999963 3344455667
Q ss_pred cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 564 RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 564 ~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
..+|++|+|+|+.++....+.+++..++..++|+|+|+||+|+..... ...++..+++ .+++++||++|.
T Consensus 77 ~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~--~~~~~~~lg~--------~~~~~vSa~~g~ 146 (429)
T TIGR03594 77 EEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA--VAAEFYSLGF--------GEPIPISAEHGR 146 (429)
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc--cHHHHHhcCC--------CCeEEEeCCcCC
Confidence 899999999999999999988888888888999999999999864332 2223333332 368999999999
Q ss_pred CHHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLVA 656 (732)
Q Consensus 644 GIdeLfe~Ii~la 656 (732)
|+++|++++....
T Consensus 147 gv~~ll~~i~~~l 159 (429)
T TIGR03594 147 GIGDLLDAILELL 159 (429)
T ss_pred ChHHHHHHHHHhc
Confidence 9999999998653
No 199
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.77 E-value=5.2e-18 Score=168.03 Aligned_cols=151 Identities=25% Similarity=0.312 Sum_probs=103.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc---------cchhh
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA---------FGAMR 559 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~---------f~~~r 559 (732)
+..++|+|+|++|||||||+++|.+..+......+.|.+.....+.+ .+ ...+.||||||+.. |....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL--PD-GREVLLTDTVGFIRDLPHQLVEAFRSTL 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe--cC-CceEEEeCCCccccCCCHHHHHHHHHHH
Confidence 33579999999999999999999987765555556666554433332 22 23799999999732 11111
Q ss_pred cccccccCeEEEEEEecCCCChhhH----HHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEE
Q 004746 560 ARGARVTDIAVIVVAADDGIRPQTN----EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMV 635 (732)
Q Consensus 560 ~r~~~~ADiVILVVDasdgi~~qt~----EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiV 635 (732)
..+..+|++++|+|+++....... +.+..+...++|+|+|+||+|+....... .... ....+++
T Consensus 116 -~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~--~~~~---------~~~~~~~ 183 (204)
T cd01878 116 -EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE--ERLE---------AGRPDAV 183 (204)
T ss_pred -HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH--HHhh---------cCCCceE
Confidence 235679999999999976544332 23333333468999999999986532211 1111 1246799
Q ss_pred EEecCCCCCHHHHHHHHHH
Q 004746 636 QISALKGEKVDDLLETIML 654 (732)
Q Consensus 636 eVSAKtGeGIdeLfe~Ii~ 654 (732)
++||++|.|+++++++|..
T Consensus 184 ~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 184 FISAKTGEGLDELLEAIEE 202 (204)
T ss_pred EEEcCCCCCHHHHHHHHHh
Confidence 9999999999999999864
No 200
>PTZ00416 elongation factor 2; Provisional
Probab=99.76 E-value=2.4e-17 Score=196.75 Aligned_cols=119 Identities=29% Similarity=0.396 Sum_probs=96.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc----------------ccccCCceeeeeeEEEEeec------CCcceeEEE
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA----------------AAEAGGITQGIGAYKVQVPV------DGKLQPCVF 546 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~----------------vse~~GtTrdI~~y~v~i~i------dgk~i~ItL 546 (732)
.+..+|+|+||+|||||||+++|+..... .....|+|.+.....+.+.. +++++.++|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 45569999999999999999999853211 12344666655444444321 123678999
Q ss_pred EeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCC
Q 004746 547 LDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD 607 (732)
Q Consensus 547 IDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~ 607 (732)
+|||||.+|.......+..+|++|+|+|+.+++..++..++.++...++|+|+++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 9999999999988889999999999999999999999999999999999999999999996
No 201
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.76 E-value=2.1e-18 Score=167.34 Aligned_cols=153 Identities=19% Similarity=0.176 Sum_probs=118.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|++||..|+||||||-++....|... ..+|+++++....+.++++.+++.||||+|+|+|..+...||+.|.++|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~--~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDL--HPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCcc--CCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 47999999999999999999998877643 4467888888888888999999999999999999999999999999999
Q ss_pred EEEEecCCCChhhHHHH-HHHH----hcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 571 IVVAADDGIRPQTNEAI-AHAK----AAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 571 LVVDasdgi~~qt~EiL-~~ak----~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|||++.......+++| +.+. ..++-.++|+||+|... .+.++-+.....+ .+-|+++||++.
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h---------~~LFiE~SAkt~ 159 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKH---------RCLFIECSAKTR 159 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhh---------CcEEEEcchhhh
Confidence 99999975433333322 2222 23445789999999753 1222222333333 367999999999
Q ss_pred CCHHHHHHHHHH
Q 004746 643 EKVDDLLETIML 654 (732)
Q Consensus 643 eGIdeLfe~Ii~ 654 (732)
+|+...|+.|++
T Consensus 160 ~~V~~~Feelve 171 (209)
T KOG0080|consen 160 ENVQCCFEELVE 171 (209)
T ss_pred ccHHHHHHHHHH
Confidence 999999998875
No 202
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.76 E-value=4.1e-18 Score=166.19 Aligned_cols=148 Identities=19% Similarity=0.312 Sum_probs=105.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc--cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcc----------ccc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV--AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE----------AFG 556 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~--~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE----------~f~ 556 (732)
.+.++|+|+|++|+|||||+|+|++..+ ......++|+++.++.+ +. .+.||||||+. .|.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV----ND---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe----CC---cEEEEeCCCCccccCChhHHHHHH
Confidence 5678999999999999999999998753 24456678887755543 22 59999999952 233
Q ss_pred hhhccccc---ccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCC
Q 004746 557 AMRARGAR---VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDI 632 (732)
Q Consensus 557 ~~r~r~~~---~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~i 632 (732)
.+...++. .+|++|+|+|++++......+++..+...++|+++|+||+|+.... .+....++.+. ....+...
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~---l~~~~~~~ 165 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKA---LKKDADDP 165 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHH---HhhccCCC
Confidence 33333443 4689999999999888888888888888899999999999986422 22222222221 01112345
Q ss_pred CEEEEecCCCCCHH
Q 004746 633 PMVQISALKGEKVD 646 (732)
Q Consensus 633 piVeVSAKtGeGId 646 (732)
.+|++||++|+||+
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 89999999999984
No 203
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.76 E-value=4.2e-18 Score=158.37 Aligned_cols=133 Identities=24% Similarity=0.321 Sum_probs=92.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcc-----ccchhhcccccccC
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE-----AFGAMRARGARVTD 567 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE-----~f~~~r~r~~~~AD 567 (732)
+|+|+|++|+|||||+++|.+..+. +. .|..+ . +. ..+|||||+. .|..+. ..++.+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~--~t~~~-----~--~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YK--KTQAV-----E--YN-----DGAIDTPGEYVENRRLYSALI-VTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cc--cceeE-----E--Ec-----CeeecCchhhhhhHHHHHHHH-HHhhcCC
Confidence 7999999999999999999977542 11 13221 1 11 1689999972 233332 3478999
Q ss_pred eEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 568 IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 568 iVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
++|+|||+++....+...++..+ ..|+|+|+||+|+.... .+...+.+...+ ..+++++||++|.|+
T Consensus 65 ~vilv~d~~~~~s~~~~~~~~~~---~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 65 VIALVQSATDPESRFPPGFASIF---VKPVIGLVTKIDLAEADVDIERAKELLETAG--------AEPIFEISSVDEQGL 133 (142)
T ss_pred EEEEEecCCCCCcCCChhHHHhc---cCCeEEEEEeeccCCcccCHHHHHHHHHHcC--------CCcEEEEecCCCCCH
Confidence 99999999987766554443332 45999999999986421 222222233222 137999999999999
Q ss_pred HHHHHHHH
Q 004746 646 DDLLETIM 653 (732)
Q Consensus 646 deLfe~Ii 653 (732)
+++|++|.
T Consensus 134 ~~l~~~l~ 141 (142)
T TIGR02528 134 EALVDYLN 141 (142)
T ss_pred HHHHHHHh
Confidence 99999874
No 204
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.76 E-value=1.6e-17 Score=160.02 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=102.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
.+|+++|+.|+|||||+.+++...+..... ++ .+.|...+.+++..+.+.||||+|++.+ .+++.+|+++|
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~--~~--~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~il 71 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLES--PE--GGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIF 71 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCC--CC--ccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEE
Confidence 479999999999999999998776653322 22 2233445556777788999999998752 35578999999
Q ss_pred EEEecCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCC----hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 572 VVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGAN----PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 572 VVDasdgi~~qt-~EiL~~ak~----~~vPIIVViNKiDL~~a~----~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|||+++....+. ..++..+.. .++|+++|+||+|+.... .......+... ...+.|++|||++|
T Consensus 72 v~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~-------~~~~~~~e~SAk~~ 144 (158)
T cd04103 72 VFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCAD-------MKRCSYYETCATYG 144 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHH-------hCCCcEEEEecCCC
Confidence 999998654444 233333322 357999999999984311 11112223221 02368999999999
Q ss_pred CCHHHHHHHHHH
Q 004746 643 EKVDDLLETIML 654 (732)
Q Consensus 643 eGIdeLfe~Ii~ 654 (732)
.||+++|+.++.
T Consensus 145 ~~i~~~f~~~~~ 156 (158)
T cd04103 145 LNVERVFQEAAQ 156 (158)
T ss_pred CCHHHHHHHHHh
Confidence 999999999874
No 205
>PRK00089 era GTPase Era; Reviewed
Probab=99.76 E-value=1e-17 Score=176.05 Aligned_cols=157 Identities=27% Similarity=0.378 Sum_probs=113.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccc--------hhhc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG--------AMRA 560 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~--------~~r~ 560 (732)
+.-.|+|+|++|+|||||+|+|++.++. ++..+.+|++... .+ +......+.||||||..... ....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~-~i---~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIR-GI---VTEDDAQIIFVDTPGIHKPKRALNRAMNKAAW 79 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEE-EE---EEcCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence 4457999999999999999999988765 5566667765321 11 11233689999999953321 2223
Q ss_pred ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC--ChHHHHHHHHHcCCCCCCCCCCCCEEEEe
Q 004746 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a--~~erv~~eL~elgl~~e~~gg~ipiVeVS 638 (732)
..+..+|++++|+|+++.+.....+++..+...+.|+++|+||+|+... ........+... ....+++++|
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~-------~~~~~i~~iS 152 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSEL-------MDFAEIVPIS 152 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhh-------CCCCeEEEec
Confidence 4568899999999999877777777777777778999999999999631 112222333221 1235799999
Q ss_pred cCCCCCHHHHHHHHHHHHh
Q 004746 639 ALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 639 AKtGeGIdeLfe~Ii~lae 657 (732)
|++|.|+++|+++|.....
T Consensus 153 A~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 153 ALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCCCCHHHHHHHHHHhCC
Confidence 9999999999999987653
No 206
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=4.7e-18 Score=174.14 Aligned_cols=116 Identities=33% Similarity=0.430 Sum_probs=95.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcc----------------ccccCCceeeeeeEEEEeecC------CcceeEEEEeC
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVA----------------AAEAGGITQGIGAYKVQVPVD------GKLQPCVFLDT 549 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~----------------vse~~GtTrdI~~y~v~i~id------gk~i~ItLIDT 549 (732)
.+|+|+||++||||||+++|+..... .....|+|.......+.+... +..+.++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 37999999999999999999843211 123456666654444444322 45789999999
Q ss_pred CCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCC
Q 004746 550 PGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD 607 (732)
Q Consensus 550 PGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~ 607 (732)
|||++|......+++.+|++|+|||+.++...++.+++.++...++|+|+|+||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 9999999999999999999999999999999999999999888899999999999985
No 207
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.75 E-value=7.7e-18 Score=173.73 Aligned_cols=160 Identities=33% Similarity=0.410 Sum_probs=120.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccc------------------cccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAA------------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~v------------------se~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~ 554 (732)
+|+|+||+|+|||||+++|+...... ....++|....... +..+++.++|||||||.+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~----~~~~~~~i~liDTPG~~~ 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVAS----FQWEDTKVNLIDTPGHMD 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEE----EEECCEEEEEEeCCCccc
Confidence 58999999999999999998532110 11223333332222 234567899999999999
Q ss_pred cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CC--CC------
Q 004746 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GL--MP------ 625 (732)
Q Consensus 555 f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl--~~------ 625 (732)
|...+..+++.+|++|+|+|+.+++..++.+++..+...++|+|+++||+|+..++.++...++... +. .+
T Consensus 77 f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~ 156 (237)
T cd04168 77 FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL 156 (237)
T ss_pred hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence 9998889999999999999999999999999999998889999999999999877766665555431 00 00
Q ss_pred --------------------------------CC---------------CCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 626 --------------------------------ED---------------WGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 626 --------------------------------e~---------------~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
+. -+.-+|++..||.++.|++.|++.|....
T Consensus 157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence 00 12336788889999999999999987643
No 208
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.75 E-value=2.7e-17 Score=152.52 Aligned_cols=153 Identities=26% Similarity=0.347 Sum_probs=107.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccc-cccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch--------hhcc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAA-AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA--------MRAR 561 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~v-se~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~--------~r~r 561 (732)
..+|+++|.+|+|||||+|+|.+..+.. .....++..... .........+.||||||...... ....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 78 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR----GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS 78 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE----EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH
Confidence 4689999999999999999999876542 233344433211 11233456899999999654332 2334
Q ss_pred cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC--ChHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 562 ~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a--~~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
.+..+|++++|+|+++........++..+...+.|+++|+||+|+... ...+....+... ....+++++|+
T Consensus 79 ~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~~s~ 151 (168)
T cd04163 79 ALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKEL-------GPFAEIFPISA 151 (168)
T ss_pred HHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhc-------cCCCceEEEEe
Confidence 568899999999999875555666667777678999999999998631 122222233221 11357999999
Q ss_pred CCCCCHHHHHHHHHH
Q 004746 640 LKGEKVDDLLETIML 654 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~ 654 (732)
+++.|+++++++|..
T Consensus 152 ~~~~~~~~l~~~l~~ 166 (168)
T cd04163 152 LKGENVDELLEEIVK 166 (168)
T ss_pred ccCCChHHHHHHHHh
Confidence 999999999999864
No 209
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=1.7e-17 Score=195.03 Aligned_cols=155 Identities=26% Similarity=0.385 Sum_probs=117.6
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc--------cchh
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--------FGAM 558 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~--------f~~~ 558 (732)
....++|+|+|++|||||||+|+|++.+. .+...+|+|++...+... + .+..+.||||||.+. |...
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~--~--~~~~~~liDT~G~~~~~~~~~~~~~~~ 347 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAE--W--AGTDFKLVDTGGWEADVEGIDSAIASQ 347 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEE--E--CCEEEEEEeCCCcCCCCccHHHHHHHH
Confidence 34457899999999999999999998765 356788999886443333 2 345799999999653 2233
Q ss_pred hcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEe
Q 004746 559 RARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (732)
Q Consensus 559 r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVS 638 (732)
...++..+|++|||+|+++++...+.+++..++..++|+|+|+||+|+.... ........+++ -..++||
T Consensus 348 ~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~--~~~~~~~~lg~--------~~~~~iS 417 (712)
T PRK09518 348 AQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASE--YDAAEFWKLGL--------GEPYPIS 417 (712)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccch--hhHHHHHHcCC--------CCeEEEE
Confidence 3456789999999999999888888888888888899999999999985432 11222222222 1357999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 004746 639 ALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 639 AKtGeGIdeLfe~Ii~la 656 (732)
|++|.||++|+++|....
T Consensus 418 A~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSL 435 (712)
T ss_pred CCCCCCchHHHHHHHHhc
Confidence 999999999999998654
No 210
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.75 E-value=2.5e-17 Score=161.71 Aligned_cols=154 Identities=25% Similarity=0.297 Sum_probs=106.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
.+|+|+|+.|+|||||+++|....+.....+.+.. .+...+.+++..+.+.+|||+|++.|..++...+..+|++|+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~ll 78 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFE---NYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILI 78 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccc---eEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEE
Confidence 48999999999999999999876664333322211 122234456666789999999999888777677899999999
Q ss_pred EEEecCCCChhhH--HHHHHHH--hcCCCEEEEEeCCCCCCCC-------------hHHHHHHHHHcCCCCCCCCCCCCE
Q 004746 572 VVAADDGIRPQTN--EAIAHAK--AAGVPIVIAINKIDKDGAN-------------PERVMQELSSIGLMPEDWGGDIPM 634 (732)
Q Consensus 572 VVDasdgi~~qt~--EiL~~ak--~~~vPIIVViNKiDL~~a~-------------~erv~~eL~elgl~~e~~gg~ipi 634 (732)
|+|+++....+.. .++..+. ..++|+|+|+||+|+.... .++........+ ..++
T Consensus 79 v~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 150 (187)
T cd04129 79 GFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIG--------AKKY 150 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhC--------CcEE
Confidence 9999864332222 1233322 2368999999999984321 111111111211 2479
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q 004746 635 VQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~la 656 (732)
|+|||++|.||+++|+++....
T Consensus 151 ~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 151 MECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred EEccCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998654
No 211
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=1.1e-17 Score=196.60 Aligned_cols=160 Identities=21% Similarity=0.291 Sum_probs=119.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcc----------ccchh
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE----------AFGAM 558 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE----------~f~~~ 558 (732)
..++|+|+|++|+|||||+|+|++... .+.+.+|+|++.....+. +++ ..+.||||||+. .|..+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~--~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVE--IDG--EDWLFIDTAGIKRRQHKLTGAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEE--ECC--CEEEEEECCCcccCcccchhHHHHHHH
Confidence 458999999999999999999998775 467788999875433333 344 468899999952 23333
Q ss_pred hc-ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEE
Q 004746 559 RA-RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQ 636 (732)
Q Consensus 559 r~-r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVe 636 (732)
+. .+++.+|++|+|+|++++...++..++..+...++|+|+|+||+|+..... +.+...+.. .+... ...++++
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~-~l~~~---~~~~ii~ 600 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKT-EFDRV---TWARRVN 600 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHH-hccCC---CCCCEEE
Confidence 32 345889999999999999999998888888778999999999999965322 222222222 11111 2357899
Q ss_pred EecCCCCCHHHHHHHHHHHHh
Q 004746 637 ISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 637 VSAKtGeGIdeLfe~Ii~lae 657 (732)
+||++|.|+++|++.+....+
T Consensus 601 iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987654
No 212
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=6e-18 Score=162.17 Aligned_cols=156 Identities=20% Similarity=0.169 Sum_probs=122.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
..+++|||+..+|||||+.++....+...... |.++.+....+.-..+.+.+.+|||+|+|.|......+++.++++|
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvs--TvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVS--TVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceee--eeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 35899999999999999999998887754443 5566555555545567789999999999999999999999999999
Q ss_pred EEEEecCCCChhh----HHHHHHHHhcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 571 IVVAADDGIRPQT----NEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 571 LVVDasdgi~~qt----~EiL~~ak~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
|+||+++...... .-.+.+....+.|+|+|+||||+... ..++..+...++|+ .||++|||.+.
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf---------efFEtSaK~Ni 169 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF---------EFFETSAKENI 169 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh---------HHhhhcccccc
Confidence 9999997543322 23333444568999999999999653 34556666666664 69999999999
Q ss_pred CHHHHHHHHHHHHh
Q 004746 644 KVDDLLETIMLVAE 657 (732)
Q Consensus 644 GIdeLfe~Ii~lae 657 (732)
|++++|+.++....
T Consensus 170 nVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 170 NVKQVFERLVDIIC 183 (193)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999986543
No 213
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=7.8e-18 Score=169.51 Aligned_cols=157 Identities=20% Similarity=0.252 Sum_probs=123.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
...++|+++|++++|||-||.++..+.|..... .|+++.+....+.++++.++..||||+|+|+|..+...||+.|-+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~Sk--sTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESK--STIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccc--cceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 345789999999999999999999988875544 388888888888889999999999999999999999999999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCC--CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDG--ANPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~--a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|||||++...+.+. ..++..++. .++++++|+||+||.+ +-+.+..+.+++.. ...|+++||+.+
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~--------~l~f~EtSAl~~ 161 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKE--------GLFFLETSALDA 161 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhc--------CceEEEeccccc
Confidence 999999987543332 223333433 4788999999999965 22333333333321 246999999999
Q ss_pred CCHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLV 655 (732)
Q Consensus 643 eGIdeLfe~Ii~l 655 (732)
.|+++.|+.++..
T Consensus 162 tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 162 TNVEKAFERVLTE 174 (222)
T ss_pred ccHHHHHHHHHHH
Confidence 9999999887754
No 214
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.74 E-value=1.4e-17 Score=163.12 Aligned_cols=157 Identities=24% Similarity=0.261 Sum_probs=115.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+..+|+|+|..|+|||||+++|....... ...|.++....+.+ .++.++|||.+|+..+...|..++..+|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~ 84 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADG 84 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc---cCcccccccceeee----CcEEEEEEeccccccccccceeeccccce
Confidence 566799999999999999999998765432 22255555555443 45789999999999999999999999999
Q ss_pred EEEEEEecCCC-ChhhHHHHHHH----HhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGI-RPQTNEAIAHA----KAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi-~~qt~EiL~~a----k~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|||+|+++.. ..+..+.+..+ ...++|++|++||+|+.++. .+++...+.-..+. ....+.++.|||++|
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~---~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLK---NKRPWSVFSCSAKTG 161 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTT---SSSCEEEEEEBTTTT
T ss_pred eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcc---cCCceEEEeeeccCC
Confidence 99999999742 22233333332 22478999999999998754 34444333222222 123567999999999
Q ss_pred CCHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLV 655 (732)
Q Consensus 643 eGIdeLfe~Ii~l 655 (732)
+|+.+.++||...
T Consensus 162 ~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 162 EGVDEGLEWLIEQ 174 (175)
T ss_dssp BTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhc
Confidence 9999999999864
No 215
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=2.8e-17 Score=160.44 Aligned_cols=156 Identities=22% Similarity=0.328 Sum_probs=109.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCc--cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc----------ccc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV--AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EAF 555 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~--~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh----------E~f 555 (732)
....++|+|+|++|+|||||+++|++..+ ......++|+++..+.+ ...+.||||||+ +.|
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-------~~~l~l~DtpG~~~~~~~~~~~~~~ 93 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-------NDKLRLVDLPGYGYAKVSKEEKEKW 93 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-------CCeEEEeCCCCCCCcCCCchHHHHH
Confidence 34668999999999999999999998653 24445677777655442 247999999995 233
Q ss_pred chhhccccc---ccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCC
Q 004746 556 GAMRARGAR---VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGD 631 (732)
Q Consensus 556 ~~~r~r~~~---~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ 631 (732)
..+...++. .++++++|+|+++.......+++..+...++|+++++||+|+.... .++....+... + ... .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l--~~~--~ 168 (196)
T PRK00454 94 QKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKA-L--KFG--D 168 (196)
T ss_pred HHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHH-H--Hhc--C
Confidence 333333443 4478899999888776666666666777789999999999985432 22222222221 0 000 3
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHH
Q 004746 632 IPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 632 ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
.+++++||++|.|++++++.|..+
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 579999999999999999998754
No 216
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=8.8e-18 Score=161.32 Aligned_cols=153 Identities=22% Similarity=0.275 Sum_probs=123.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
-++|+++|+.|+|||+|+.++...-|..+ .|.|+++++....+.+++..+++.||||+|+|+|......|++.|+++|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppg--qgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCC--CCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 36899999999999999999998887655 3558888888888888999999999999999999999999999999999
Q ss_pred EEEEecCCC----ChhhHHHHHHHHhcCCCEEEEEeCCCCCCC--ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 571 IVVAADDGI----RPQTNEAIAHAKAAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 571 LVVDasdgi----~~qt~EiL~~ak~~~vPIIVViNKiDL~~a--~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
||||++... .++|...++.....++--|+|+||+|+.+. -++++-+++.+.. +.-|+++||+...|
T Consensus 85 lvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~q--------dmyfletsakea~n 156 (213)
T KOG0095|consen 85 LVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQ--------DMYFLETSAKEADN 156 (213)
T ss_pred EEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhh--------hhhhhhhcccchhh
Confidence 999999743 445555555555556667999999999543 2344444444432 23478999999999
Q ss_pred HHHHHHHHH
Q 004746 645 VDDLLETIM 653 (732)
Q Consensus 645 IdeLfe~Ii 653 (732)
++.||..|.
T Consensus 157 ve~lf~~~a 165 (213)
T KOG0095|consen 157 VEKLFLDLA 165 (213)
T ss_pred HHHHHHHHH
Confidence 999999886
No 217
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.74 E-value=1.8e-17 Score=160.06 Aligned_cols=140 Identities=19% Similarity=0.269 Sum_probs=97.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcc----ccchhhcccccccCe
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE----AFGAMRARGARVTDI 568 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE----~f~~~r~r~~~~ADi 568 (732)
+|+++|++|+|||||+|+|.+.... ...|+.+ .+ ... .+|||||.. .+...+...+..+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~----~~~~~~v-----~~--~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~ 67 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL----ARKTQAV-----EF--NDK----GDIDTPGEYFSHPRWYHALITTLQDVDM 67 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc----CccceEE-----EE--CCC----CcccCCccccCCHHHHHHHHHHHhcCCE
Confidence 7999999999999999998864321 1123322 21 222 269999962 222222334689999
Q ss_pred EEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHH
Q 004746 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (732)
Q Consensus 569 VILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeL 648 (732)
+|+|+|+++........++.. ..+.|+++++||+|+...+.+...+.+...++ ..+++++||++|+||++|
T Consensus 68 il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~-------~~p~~~~Sa~~g~gi~~l 138 (158)
T PRK15467 68 LIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVAATRKLLLETGF-------EEPIFELNSHDPQSVQQL 138 (158)
T ss_pred EEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHHHHHHHHHHcCC-------CCCEEEEECCCccCHHHH
Confidence 999999997654433333222 23679999999999977666555555555442 258999999999999999
Q ss_pred HHHHHHHH
Q 004746 649 LETIMLVA 656 (732)
Q Consensus 649 fe~Ii~la 656 (732)
|++|....
T Consensus 139 ~~~l~~~~ 146 (158)
T PRK15467 139 VDYLASLT 146 (158)
T ss_pred HHHHHHhc
Confidence 99998654
No 218
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.74 E-value=5.4e-17 Score=162.74 Aligned_cols=155 Identities=18% Similarity=0.146 Sum_probs=114.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+++|++|+|||||+++++...+...+. .|.++.++...+..+++.+.+.+|||+|++.|..++..++..+|++|
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYI--PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCCC--CccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 4799999999999999999888766554333 35555566666666778899999999999999988888889999999
Q ss_pred EEEEecCCCChhhHH-HHHHHH--hcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHH
Q 004746 571 IVVAADDGIRPQTNE-AIAHAK--AAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (732)
Q Consensus 571 LVVDasdgi~~qt~E-iL~~ak--~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGId 646 (732)
+|||+++....+... ++..+. ..++|+++++||+|+..... .+........ .+.++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 87 IMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKK---------NLQYYDISAKSNYNFE 157 (215)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHc---------CCEEEEEeCCCCCCHH
Confidence 999999754433322 222221 24689999999999854321 2222222211 3579999999999999
Q ss_pred HHHHHHHHHH
Q 004746 647 DLLETIMLVA 656 (732)
Q Consensus 647 eLfe~Ii~la 656 (732)
++|.+|+...
T Consensus 158 ~~f~~ia~~l 167 (215)
T PTZ00132 158 KPFLWLARRL 167 (215)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 219
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=1.1e-17 Score=168.42 Aligned_cols=116 Identities=35% Similarity=0.517 Sum_probs=90.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccc-------------------cccCCceeeeeeEEEEeec-CCcceeEEEEeCCC
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAA-------------------AEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPG 551 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~v-------------------se~~GtTrdI~~y~v~i~i-dgk~i~ItLIDTPG 551 (732)
.+|+|+||+|||||||+++|+...... ....|+|.......+.+.. ++..+.++||||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 369999999999999999998543221 1223455444333333321 35568899999999
Q ss_pred ccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCC
Q 004746 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD 607 (732)
Q Consensus 552 hE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~ 607 (732)
|++|...+..++..+|++|+|||+.++...++.+++..+...++|+++|+||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 99998888888999999999999999888887777777777789999999999974
No 220
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.73 E-value=4.3e-17 Score=148.47 Aligned_cols=153 Identities=27% Similarity=0.418 Sum_probs=110.0
Q ss_pred EEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhc-------ccccccC
Q 004746 496 IMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRA-------RGARVTD 567 (732)
Q Consensus 496 IVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~-------r~~~~AD 567 (732)
|+|++|+|||||+++|.+.... .....++|.....+.... . ....+.||||||+..+..... ..+..+|
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d 77 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWEL--G-PLGPVVLIDTPGIDEAGGLGREREELARRVLERAD 77 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEe--c-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCC
Confidence 5899999999999999977655 556666676654444332 1 145799999999877654333 3568899
Q ss_pred eEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHH-HHHcCCCCCCCCCCCCEEEEecCCCCCHH
Q 004746 568 IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQE-LSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (732)
Q Consensus 568 iVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~e-L~elgl~~e~~gg~ipiVeVSAKtGeGId 646 (732)
++++|+|+.+........++......+.|+++|+||+|+........... .... .......+++++||+++.|++
T Consensus 78 ~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~sa~~~~~v~ 153 (163)
T cd00880 78 LILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLI----LLLLLGLPVIAVSALTGEGID 153 (163)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhh----cccccCCceEEEeeeccCCHH
Confidence 99999999987776666556666677899999999999865332221110 1111 111235789999999999999
Q ss_pred HHHHHHHHH
Q 004746 647 DLLETIMLV 655 (732)
Q Consensus 647 eLfe~Ii~l 655 (732)
+++++|..+
T Consensus 154 ~l~~~l~~~ 162 (163)
T cd00880 154 ELREALIEA 162 (163)
T ss_pred HHHHHHHhh
Confidence 999998753
No 221
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=5.8e-17 Score=175.39 Aligned_cols=155 Identities=22% Similarity=0.211 Sum_probs=109.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc-------cchhhcccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGA 563 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~-------f~~~r~r~~ 563 (732)
...|+|||.+||||||||++|...+..+..++++|++.....+.+. ....+.||||||.-. +.....+.+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~---~~~~~~i~D~PGli~ga~~~~gLg~~flrhi 234 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD---DYKSFVIADIPGLIEGASEGAGLGHRFLKHI 234 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC---CCcEEEEEeCCCccCCCCccccHHHHHHHHh
Confidence 3569999999999999999999887777888899988766665542 334699999999521 223334556
Q ss_pred cccCeEEEEEEecCCCChhhH-HHHHHHHh-----cCCCEEEEEeCCCCCCCChHH--HHHHHHHcCCCCCCCCCCCCEE
Q 004746 564 RVTDIAVIVVAADDGIRPQTN-EAIAHAKA-----AGVPIVIAINKIDKDGANPER--VMQELSSIGLMPEDWGGDIPMV 635 (732)
Q Consensus 564 ~~ADiVILVVDasdgi~~qt~-EiL~~ak~-----~~vPIIVViNKiDL~~a~~er--v~~eL~elgl~~e~~gg~ipiV 635 (732)
..+|++|+|||+++....+.. .++..+.. .++|+|+|+||+|+....... ....... . ...++|
T Consensus 235 e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~------~--~~~~i~ 306 (335)
T PRK12299 235 ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELA------A--LGGPVF 306 (335)
T ss_pred hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHH------h--cCCCEE
Confidence 789999999999864322222 23333332 368999999999996532211 1111111 0 125799
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 004746 636 QISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 636 eVSAKtGeGIdeLfe~Ii~la 656 (732)
+|||++++||++|+++|....
T Consensus 307 ~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 307 LISAVTGEGLDELLRALWELL 327 (335)
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 999999999999999998654
No 222
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.72 E-value=2.7e-17 Score=156.49 Aligned_cols=150 Identities=24% Similarity=0.189 Sum_probs=98.8
Q ss_pred EEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcccc----chh---hcccccccCe
Q 004746 496 IMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF----GAM---RARGARVTDI 568 (732)
Q Consensus 496 IVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f----~~~---r~r~~~~ADi 568 (732)
|+|++|+|||||+++|.+........+++|++.....+. +. .+..+.||||||+... ..+ ...++..+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVE--VP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEE--cC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 589999999999999998876556667778766544433 22 1457999999996321 111 2234678999
Q ss_pred EEEEEEecCCC-----C-hhh-HHHHHHHH----------hcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCC
Q 004746 569 AVIVVAADDGI-----R-PQT-NEAIAHAK----------AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGD 631 (732)
Q Consensus 569 VILVVDasdgi-----~-~qt-~EiL~~ak----------~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ 631 (732)
+++|+|+++.. . ... ..+...+. ..+.|+++|+||+|+............... ....
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~------~~~~ 151 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELA------LEEG 151 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHh------cCCC
Confidence 99999998763 1 111 11111111 147899999999999643221111000110 1124
Q ss_pred CCEEEEecCCCCCHHHHHHHHHH
Q 004746 632 IPMVQISALKGEKVDDLLETIML 654 (732)
Q Consensus 632 ipiVeVSAKtGeGIdeLfe~Ii~ 654 (732)
..++++||+++.|+++++++|..
T Consensus 152 ~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 152 AEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred CCEEEEehhhhcCHHHHHHHHHh
Confidence 67999999999999999999864
No 223
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.72 E-value=2.4e-17 Score=158.17 Aligned_cols=158 Identities=21% Similarity=0.236 Sum_probs=123.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
.+.+|+|++++|||+|+.++....|..+++ +|+++++....++++|..+.+.||||+|+|.|..+...+++..+++|+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYi--tTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYI--TTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceE--EEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 467899999999999999999888876665 466776666667778999999999999999999999999999999999
Q ss_pred EEEecCCCChhh-HHHHHHHHh--cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 572 VVAADDGIRPQT-NEAIAHAKA--AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 572 VVDasdgi~~qt-~EiL~~ak~--~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
|||++++..... ..+++.++. ..+|-++|+||+|.++. +.+.......++ ++.+|++||+..+|+
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~m---------gie~FETSaKe~~Nv 157 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQM---------GIELFETSAKENENV 157 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhc---------Cchheehhhhhcccc
Confidence 999998654332 334443332 25788999999999763 233334444343 367999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 004746 646 DDLLETIMLVAELQE 660 (732)
Q Consensus 646 deLfe~Ii~lael~~ 660 (732)
+.+|.-|..+.....
T Consensus 158 E~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 158 EAMFHCITKQVLQAK 172 (198)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999987654333
No 224
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.72 E-value=4.3e-17 Score=174.71 Aligned_cols=237 Identities=22% Similarity=0.308 Sum_probs=170.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCcccc--------------ccCCceeeeeeEEEEeec-------------------
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAA--------------EAGGITQGIGAYKVQVPV------------------- 537 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vs--------------e~~GtTrdI~~y~v~i~i------------------- 537 (732)
..+|+++|.+++||||||..|.+.....+ -..|.|..++...+.+..
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 35899999999999999988764433211 122333222211111111
Q ss_pred --CCcceeEEEEeCCCccccchhhcccc--cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHH
Q 004746 538 --DGKLQPCVFLDTPGHEAFGAMRARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER 613 (732)
Q Consensus 538 --dgk~i~ItLIDTPGhE~f~~~r~r~~--~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~er 613 (732)
.....-++|||.+|||.|......++ ...|..+|+|-++-++...+.|++..+...++|+++|++|||+..++..+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLq 292 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQ 292 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHH
Confidence 11223589999999999998888777 67899999999999999999999999999999999999999997765322
Q ss_pred -HHHHHHHc----CCC---------------CCCC--CCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccc
Q 004746 614 -VMQELSSI----GLM---------------PEDW--GGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKG 671 (732)
Q Consensus 614 -v~~eL~el----gl~---------------~e~~--gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g 671 (732)
....+..+ +.. ..+| ..-+|+|.+|..+|.|++-|...|..+.. ....+.+.++++
T Consensus 293 EtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLNlls~--R~~~~E~~PAeF 370 (641)
T KOG0463|consen 293 ETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLNLLSL--RRQLNENDPAEF 370 (641)
T ss_pred HHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHhhcCc--ccccccCCCcce
Confidence 12222111 100 0011 13489999999999999877766655432 223456788999
Q ss_pred eEEEEeeccCCCceEEEEEEeeEEecCCEEEEcCe------eEEEEEEEcCCCCccceecCCCCe
Q 004746 672 TVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA------FGKVRALFDDSGNRVDEAGPSIPV 730 (732)
Q Consensus 672 ~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~------~gkVrsI~~~~g~~V~~A~pG~~V 730 (732)
.|.+++..+|.|+|+.|...+|+++.+|.+.+|+. ...|++|...+ -+|..+.-|+.+
T Consensus 371 QIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKR-MpV~~VrcGQtA 434 (641)
T KOG0463|consen 371 QIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKR-MPVGIVRCGQTA 434 (641)
T ss_pred eecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhcc-ccceEEeccchh
Confidence 99999999999999999999999999999999863 34677776653 567777666643
No 225
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.72 E-value=5.5e-17 Score=170.65 Aligned_cols=124 Identities=33% Similarity=0.401 Sum_probs=102.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCc------------------cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKV------------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~------------------~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~ 554 (732)
+|+|+||+|+|||||+++|+...- ......|+|++.....+.. +++.++|||||||.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~----~~~~i~liDTPG~~d 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW----KDHRINIIDTPGHVD 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE----CCEEEEEEECCCcHH
Confidence 589999999999999999973211 0123557777665555443 457899999999999
Q ss_pred cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHH
Q 004746 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS 620 (732)
Q Consensus 555 f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~e 620 (732)
|...+..+++.+|++|||+|+.+++..++.+++..+...++|+|+++||+|+.+++.++...++..
T Consensus 77 f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~ 142 (270)
T cd01886 77 FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIRE 142 (270)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence 999888999999999999999999999999999999999999999999999988777666666654
No 226
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=1.6e-16 Score=159.80 Aligned_cols=157 Identities=21% Similarity=0.322 Sum_probs=121.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCC--ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCC----------ccccch
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTK--VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----------HEAFGA 557 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k--~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG----------hE~f~~ 557 (732)
..+.|+++|++|||||||||+|++.+ +..+..||.||.+++|.+. + .+.|+|.|| .+.+..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~---~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----D---ELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----C---cEEEEeCCCcccccCCHHHHHHHHH
Confidence 56789999999999999999999876 5588999999999888864 2 289999999 244555
Q ss_pred hhcccc---cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC-ChHHHHHHHH-HcCCCCCCCCCCC
Q 004746 558 MRARGA---RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPERVMQELS-SIGLMPEDWGGDI 632 (732)
Q Consensus 558 ~r~r~~---~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a-~~erv~~eL~-elgl~~e~~gg~i 632 (732)
+...|+ ....++++++|+.+++...+.++++++...++|++|++||+|+... ...+....+. .+.+... | ..
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~-~--~~ 172 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP-D--DQ 172 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC-c--cc
Confidence 555666 2357889999999999999999999999999999999999998653 2333333333 2222221 1 12
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHH
Q 004746 633 PMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 633 piVeVSAKtGeGIdeLfe~Ii~la 656 (732)
.++..|+.++.|+++|...|....
T Consensus 173 ~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 173 WVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred eEEEEecccccCHHHHHHHHHHHh
Confidence 288999999999999999987643
No 227
>PRK11058 GTPase HflX; Provisional
Probab=99.71 E-value=8.5e-17 Score=179.14 Aligned_cols=151 Identities=24% Similarity=0.301 Sum_probs=108.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc---------cchhhcc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA---------FGAMRAR 561 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~---------f~~~r~r 561 (732)
.++|+|+|.+|+|||||+|+|++.++.+...+++|.+.....+.+ .+ ...+.||||||... |.. ...
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l--~~-~~~~~l~DTaG~~r~lp~~lve~f~~-tl~ 272 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV--AD-VGETVLADTVGFIRHLPHDLVAAFKA-TLQ 272 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe--CC-CCeEEEEecCcccccCCHHHHHHHHH-HHH
Confidence 379999999999999999999988877778888998876555554 22 22689999999633 222 123
Q ss_pred cccccCeEEEEEEecCCCChhhH----HHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCC-EEE
Q 004746 562 GARVTDIAVIVVAADDGIRPQTN----EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIP-MVQ 636 (732)
Q Consensus 562 ~~~~ADiVILVVDasdgi~~qt~----EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ip-iVe 636 (732)
.+..+|++|+|+|+++....... +++..+...++|+|+|+||+|+........ . .... ..+ +++
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~-~-~~~~---------~~~~~v~ 341 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRI-D-RDEE---------NKPIRVW 341 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHH-H-HHhc---------CCCceEE
Confidence 45889999999999986543332 334444445789999999999854211111 1 1111 123 588
Q ss_pred EecCCCCCHHHHHHHHHHHH
Q 004746 637 ISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 637 VSAKtGeGIdeLfe~Ii~la 656 (732)
+||++|.||++|+++|....
T Consensus 342 ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 342 LSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred EeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998654
No 228
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.71 E-value=8.5e-17 Score=144.01 Aligned_cols=148 Identities=26% Similarity=0.348 Sum_probs=107.7
Q ss_pred EEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEe
Q 004746 496 IMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAA 575 (732)
Q Consensus 496 IVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDa 575 (732)
|+|++|+|||||+++|......... ...|. +..+............+.||||||+..+.......+..+|++++|+|+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~-~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 78 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE-YETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDV 78 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc-cccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEEC
Confidence 5899999999999999977653222 22343 555666665556678899999999988877777778999999999999
Q ss_pred cCCCChhhHHHH-----HHHHhcCCCEEEEEeCCCCCCCChHHHH---HHHHHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 576 DDGIRPQTNEAI-----AHAKAAGVPIVIAINKIDKDGANPERVM---QELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 576 sdgi~~qt~EiL-----~~ak~~~vPIIVViNKiDL~~a~~erv~---~eL~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
++.........+ ......++|+++++||+|+......... ...... ...+++++|++++.|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 79 TDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKE--------LGVPYFETSAKTGENVEE 150 (157)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhh--------cCCcEEEEecCCCCChHH
Confidence 986544443322 2334568999999999998654332222 111111 246899999999999999
Q ss_pred HHHHHH
Q 004746 648 LLETIM 653 (732)
Q Consensus 648 Lfe~Ii 653 (732)
++++|.
T Consensus 151 ~~~~l~ 156 (157)
T cd00882 151 LFEELA 156 (157)
T ss_pred HHHHHh
Confidence 999875
No 229
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=6.7e-17 Score=173.26 Aligned_cols=310 Identities=20% Similarity=0.271 Sum_probs=211.5
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhCCCcccc-cccCCHHH-------HHHhhhhcCCeee--ec--------CchhhHHHhh
Q 004746 413 LIEELARNLAIGEGEILGSLYSKGIKPEG-VQTLDKDM-------VKMICKDYEVEVL--DA--------DPVKMEEMAR 474 (732)
Q Consensus 413 av~qLag~Ls~~i~eiik~L~~lG~~~~i-n~~Ld~e~-------ie~ia~e~~~~~i--~~--------~~~~ieell~ 474 (732)
.+.||+|+|.+..+| ++|++|+.... -+.|.+++ +..+++.+|.... .. ....+-+.+
T Consensus 80 litqMKWRLrEG~GE---AiYeIGVeD~G~l~GL~deemnaSL~TL~~MA~~lGAs~~vLrek~v~~~~~~~R~v~EVL- 155 (591)
T KOG1143|consen 80 LITQMKWRLREGQGE---AIYEIGVEDGGILSGLTDEEMNASLRTLRTMAQALGASMVVLREKDVTVKGSSRRTVVEVL- 155 (591)
T ss_pred HHHHHHhhhhcCCCc---EEEEeeeccCceeeccCHHHHHHHHHHHHHHHHHhCCceEEEEeeeeeccCCCcchhhhhh-
Confidence 478999999999999 88999887543 45676665 4466777775431 11 011111111
Q ss_pred hccccChhhhhcccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccc--------------cCCceeeeeeEEEEeec---
Q 004746 475 KKDLFDEEDLDKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAE--------------AGGITQGIGAYKVQVPV--- 537 (732)
Q Consensus 475 ~~~~~~e~~~~~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse--------------~~GtTrdI~~y~v~i~i--- 537 (732)
-..-.+....-..+|+++|..++|||||+..|.......+. ..|.|..|....+.+..
T Consensus 156 -----VRKvPd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~ 230 (591)
T KOG1143|consen 156 -----VRKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGK 230 (591)
T ss_pred -----hhhCCCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhccccccccc
Confidence 11111111222358999999999999999988754432211 12333333222221111
Q ss_pred --------------CCcceeEEEEeCCCccccchhhcccc--cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEE
Q 004746 538 --------------DGKLQPCVFLDTPGHEAFGAMRARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAI 601 (732)
Q Consensus 538 --------------dgk~i~ItLIDTPGhE~f~~~r~r~~--~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVVi 601 (732)
+.....++|+|.+||..|......++ -..|+++||++++.++...+.|++..+.+.++|++|++
T Consensus 231 vVNY~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlv 310 (591)
T KOG1143|consen 231 VVNYAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLV 310 (591)
T ss_pred ccchhhcccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEE
Confidence 11234689999999999988887777 44699999999999999999999999999999999999
Q ss_pred eCCCCCCC-ChHHHHHHHHH----cCCCCC-----------------CCCCCCCEEEEecCCCCCHHHHHHHHHHHHhhh
Q 004746 602 NKIDKDGA-NPERVMQELSS----IGLMPE-----------------DWGGDIPMVQISALKGEKVDDLLETIMLVAELQ 659 (732)
Q Consensus 602 NKiDL~~a-~~erv~~eL~e----lgl~~e-----------------~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~ 659 (732)
+|+|+... ..++..+++.. .+.... .-+.-+|+|.+|..+|+|++-|...|.-+...-
T Consensus 311 tK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~~ 390 (591)
T KOG1143|consen 311 TKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPAG 390 (591)
T ss_pred EeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCCcC
Confidence 99999654 23444444433 221111 012346999999999999988776665332211
Q ss_pred ---hhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcCe------eEEEEEEEcCCCCccceecCCCCe
Q 004746 660 ---ELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA------FGKVRALFDDSGNRVDEAGPSIPV 730 (732)
Q Consensus 660 ---~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~------~gkVrsI~~~~g~~V~~A~pG~~V 730 (732)
+.......++++.|.|++..+..|.|+-|.+.+|.|+.|+.+++|+. ..+|-+|+..+ ..+..+.||+.+
T Consensus 391 ~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr-~acrvvraGqaA 469 (591)
T KOG1143|consen 391 TAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNR-QACRVVRAGQAA 469 (591)
T ss_pred ChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeeccc-cceeeecCccce
Confidence 11112234677888899999999999999999999999999999873 46788898774 789999999887
Q ss_pred eC
Q 004746 731 QV 732 (732)
Q Consensus 731 ~I 732 (732)
.+
T Consensus 470 sl 471 (591)
T KOG1143|consen 470 SL 471 (591)
T ss_pred ee
Confidence 53
No 230
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.70 E-value=1.6e-16 Score=171.60 Aligned_cols=154 Identities=23% Similarity=0.248 Sum_probs=107.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc-------cchhhcccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGA 563 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~-------f~~~r~r~~ 563 (732)
...|+|+|.+|+|||||+++|...+..+..++++|.+.....+.+ + ....++||||||+.. +.....+.+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~--~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhi 233 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRV--D-DGRSFVIADIPGLIEGASEGAGLGHRFLKHI 233 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEe--C-CceEEEEEeCCCcccCCcccccHHHHHHHHH
Confidence 357999999999999999999988777777788888766655553 2 235799999999632 222233445
Q ss_pred cccCeEEEEEEecCC---CC-hhhHHHHHHHHh-----cCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCC
Q 004746 564 RVTDIAVIVVAADDG---IR-PQTNEAIAHAKA-----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIP 633 (732)
Q Consensus 564 ~~ADiVILVVDasdg---i~-~qt~EiL~~ak~-----~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ip 633 (732)
..+|++|+|||+++. .. .+...+.+.+.. .+.|+|+|+||+|+.... .+...+.+.+. + ..+
T Consensus 234 erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~------~--~~~ 305 (329)
T TIGR02729 234 ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA------L--GKP 305 (329)
T ss_pred HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH------c--CCc
Confidence 679999999999864 11 122222222322 368999999999996532 22222333221 1 257
Q ss_pred EEEEecCCCCCHHHHHHHHHHH
Q 004746 634 MVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 634 iVeVSAKtGeGIdeLfe~Ii~l 655 (732)
++++||++++||++|+++|...
T Consensus 306 vi~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 306 VFPISALTGEGLDELLYALAEL 327 (329)
T ss_pred EEEEEccCCcCHHHHHHHHHHH
Confidence 9999999999999999998754
No 231
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=5.7e-17 Score=179.23 Aligned_cols=172 Identities=21% Similarity=0.264 Sum_probs=120.8
Q ss_pred ChhhhhcccCCCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc------
Q 004746 480 DEEDLDKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH------ 552 (732)
Q Consensus 480 ~e~~~~~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh------ 552 (732)
...+..+....++.|+|+|+||+|||||+|+|.+... ++++.+|||+|. ++..++-.++++.|+||+|.
T Consensus 257 ~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDa----iea~v~~~G~~v~L~DTAGiRe~~~~ 332 (531)
T KOG1191|consen 257 NKADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDA----IEAQVTVNGVPVRLSDTAGIREESND 332 (531)
T ss_pred HhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhh----heeEeecCCeEEEEEeccccccccCC
Confidence 3445566678889999999999999999999997664 589999999996 44444556689999999994
Q ss_pred --cccchhhcc-cccccCeEEEEEEecCCCChhhHHHHHHHHhc------------CCCEEEEEeCCCCCCCChHHHHHH
Q 004746 553 --EAFGAMRAR-GARVTDIAVIVVAADDGIRPQTNEAIAHAKAA------------GVPIVIAINKIDKDGANPERVMQE 617 (732)
Q Consensus 553 --E~f~~~r~r-~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~------------~vPIIVViNKiDL~~a~~erv~~e 617 (732)
|..+.++++ .+..+|++++|+|+......++..+.+.+... ..++|++.||+|+...-.+.....
T Consensus 333 ~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~ 412 (531)
T KOG1191|consen 333 GIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP 412 (531)
T ss_pred hhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc
Confidence 445556654 34889999999999877777766655554432 257899999999853211000000
Q ss_pred HHHcCCCCCCCCCCCC-EEEEecCCCCCHHHHHHHHHHHHhh
Q 004746 618 LSSIGLMPEDWGGDIP-MVQISALKGEKVDDLLETIMLVAEL 658 (732)
Q Consensus 618 L~elgl~~e~~gg~ip-iVeVSAKtGeGIdeLfe~Ii~lael 658 (732)
..+........++ +.++|+++++|++.|.+.|....+.
T Consensus 413 ---~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 413 ---VVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ---eeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 0000011112334 4569999999999999999876543
No 232
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=5.3e-17 Score=156.49 Aligned_cols=156 Identities=22% Similarity=0.264 Sum_probs=118.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
-++++++|..|.|||+||.+++..++.... ..|+++.+....+.+.++.+++.||||+|+|.|......|++.|-+++
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDds--sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDS--SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccc--cceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 468999999999999999999988876433 347777777767777899999999999999999999999999999999
Q ss_pred EEEEecCCCChhh-HHHHHHHH---hcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHH
Q 004746 571 IVVAADDGIRPQT-NEAIAHAK---AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (732)
Q Consensus 571 LVVDasdgi~~qt-~EiL~~ak---~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGId 646 (732)
||||++....... -.++..++ ..++-+|+++||.||.. ++....++...|..++ .+.+.++||++|+|++
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~---~R~VtflEAs~FaqEn---el~flETSa~TGeNVE 160 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP---EREVTFLEASRFAQEN---ELMFLETSALTGENVE 160 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh---hhhhhHHHHHhhhccc---ceeeeeecccccccHH
Confidence 9999997433222 22333333 34566899999999953 3334444443343333 3578999999999999
Q ss_pred HHHHHHHH
Q 004746 647 DLLETIML 654 (732)
Q Consensus 647 eLfe~Ii~ 654 (732)
+.|-....
T Consensus 161 EaFl~c~~ 168 (214)
T KOG0086|consen 161 EAFLKCAR 168 (214)
T ss_pred HHHHHHHH
Confidence 99876553
No 233
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=3.8e-16 Score=172.21 Aligned_cols=158 Identities=20% Similarity=0.182 Sum_probs=110.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc-------cchhhccccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGAR 564 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~-------f~~~r~r~~~ 564 (732)
.-|+|||.||+|||||||+|+..+..++..++||+......+.+. ....|.|+||||... +.....+.+.
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~---~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ 236 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD---DERSFVVADIPGLIEGASEGAGLGIRFLKHLE 236 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC---CCcEEEEEeCCCccccccchhhHHHHHHHHHH
Confidence 359999999999999999999888888888999988776665542 234699999999532 2222334578
Q ss_pred ccCeEEEEEEecC----CCChhhHHHHHHHHh-----cCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCE
Q 004746 565 VTDIAVIVVAADD----GIRPQTNEAIAHAKA-----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPM 634 (732)
Q Consensus 565 ~ADiVILVVDasd----gi~~qt~EiL~~ak~-----~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipi 634 (732)
.+|++|+|+|++. ....+...+++.+.. .+.|+|+|+||+|+.... .......+... ++...++
T Consensus 237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~------~~~~~~V 310 (390)
T PRK12298 237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA------LGWEGPV 310 (390)
T ss_pred hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH------hCCCCCE
Confidence 8999999999872 122223334444443 368999999999985421 11122222221 1112368
Q ss_pred EEEecCCCCCHHHHHHHHHHHHhh
Q 004746 635 VQISALKGEKVDDLLETIMLVAEL 658 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~lael 658 (732)
+++||+++.||++|+++|......
T Consensus 311 i~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 311 YLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred EEEECCCCcCHHHHHHHHHHHhhh
Confidence 999999999999999999876543
No 234
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=5.1e-16 Score=172.72 Aligned_cols=151 Identities=24% Similarity=0.261 Sum_probs=107.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc-------cchhhccccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGAR 564 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~-------f~~~r~r~~~ 564 (732)
..|+|+|.+||||||||++|++.+..+...+++|.......+.+. ....++||||||... +.....+.+.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~---~~~~~~laD~PGliega~~~~gLg~~fLrhie 235 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD---DGRSFVMADIPGLIEGASEGVGLGHQFLRHIE 235 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe---CCceEEEEECCCCcccccccchHHHHHHHHHh
Confidence 469999999999999999999888777778899988876665542 135799999999532 1122234456
Q ss_pred ccCeEEEEEEecCC----CChhhHHHHHHHHh-----cCCCEEEEEeCCCCCCCChHHHHHHHHH-cCCCCCCCCCCCCE
Q 004746 565 VTDIAVIVVAADDG----IRPQTNEAIAHAKA-----AGVPIVIAINKIDKDGANPERVMQELSS-IGLMPEDWGGDIPM 634 (732)
Q Consensus 565 ~ADiVILVVDasdg----i~~qt~EiL~~ak~-----~~vPIIVViNKiDL~~a~~erv~~eL~e-lgl~~e~~gg~ipi 634 (732)
.+|++|+|||+++. .......+.+.+.. .++|+|||+||+|+... ......+.+ ++ .++
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l~---------~~i 304 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKLG---------PKV 304 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHhC---------CcE
Confidence 79999999999753 11222233333332 47899999999998532 222222222 21 469
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q 004746 635 VQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~la 656 (732)
+++||++++|+++|+++|....
T Consensus 305 ~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 305 FPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998654
No 235
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.69 E-value=2.2e-16 Score=165.85 Aligned_cols=129 Identities=32% Similarity=0.487 Sum_probs=96.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccc---------cCCce---------eeeeeEEEEeecCCcceeEEEEeCCCcc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAE---------AGGIT---------QGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse---------~~GtT---------rdI~~y~v~i~idgk~i~ItLIDTPGhE 553 (732)
.+|+|+||+|+|||||+++|+...-.... .+.++ +.+.++.....+..+++.++|||||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 68999999999999999999853211110 01111 1111122222234566899999999999
Q ss_pred ccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHH
Q 004746 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS 620 (732)
Q Consensus 554 ~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~e 620 (732)
+|......+++.+|++|+|+|+++++..++..++..+...++|+|+++||+|+..++..++..++..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~ 149 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEE 149 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHH
Confidence 9988888888999999999999999888888888888888999999999999988776555555543
No 236
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=4.2e-16 Score=176.03 Aligned_cols=155 Identities=24% Similarity=0.196 Sum_probs=107.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc-------cchhhcccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGA 563 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~-------f~~~r~r~~ 563 (732)
...|+|+|.+|+|||||||+|...+..+..++++|++.....+.+ ....|+||||||... +.....+.+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~----~~~~f~laDtPGliegas~g~gLg~~fLrhi 234 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA----GDTRFTVADVPGLIPGASEGKGLGLDFLRHI 234 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE----CCeEEEEEECCCCccccchhhHHHHHHHHHH
Confidence 357999999999999999999988877788899998876655543 235799999999421 112223456
Q ss_pred cccCeEEEEEEecCCC-----ChhhH----HHHHHH----------HhcCCCEEEEEeCCCCCCCCh--HHHHHHHHHcC
Q 004746 564 RVTDIAVIVVAADDGI-----RPQTN----EAIAHA----------KAAGVPIVIAINKIDKDGANP--ERVMQELSSIG 622 (732)
Q Consensus 564 ~~ADiVILVVDasdgi-----~~qt~----EiL~~a----------k~~~vPIIVViNKiDL~~a~~--erv~~eL~elg 622 (732)
..+|++|+|||+++.. ..+.. ++..+. ...+.|+|||+||+|+.+... +.+...+...
T Consensus 235 eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~- 313 (500)
T PRK12296 235 ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEAR- 313 (500)
T ss_pred HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc-
Confidence 7899999999997521 11111 222222 224689999999999964321 1112222221
Q ss_pred CCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHhh
Q 004746 623 LMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAEL 658 (732)
Q Consensus 623 l~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael 658 (732)
.+++|+|||++++||++|+++|..+...
T Consensus 314 --------g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 314 --------GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred --------CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2579999999999999999999876543
No 237
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.67 E-value=7e-16 Score=143.65 Aligned_cols=152 Identities=22% Similarity=0.360 Sum_probs=102.9
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCcc--ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc----------cchhhcc
Q 004746 494 LTIMGHVDHGKTTLLDHIRKTKVA--AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA----------FGAMRAR 561 (732)
Q Consensus 494 VaIVG~~nvGKSSLLnrLl~~k~~--vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~----------f~~~r~r 561 (732)
|+++|++|+|||||++.|.+.... .....+.|..+..+. .++ .+.||||||+.. +......
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 74 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFN----VND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEE 74 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEE----ccC---eEEEecCCCccccccCHHHHHHHHHHHHH
Confidence 799999999999999999954433 333344455432222 222 799999999533 2233333
Q ss_pred cc---cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEE
Q 004746 562 GA---RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQI 637 (732)
Q Consensus 562 ~~---~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeV 637 (732)
++ ...+++++++|.++.......++++.+...+.|+++++||+|+..... ......+... + ..+....+++++
T Consensus 75 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~-l--~~~~~~~~~~~~ 151 (170)
T cd01876 75 YLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKE-L--KLFEIDPPIILF 151 (170)
T ss_pred HHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHH-H--HhccCCCceEEE
Confidence 33 356889999999887777777777888888899999999999853221 1122222110 0 002234689999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 004746 638 SALKGEKVDDLLETIMLV 655 (732)
Q Consensus 638 SAKtGeGIdeLfe~Ii~l 655 (732)
||+++.|+++++++|...
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998753
No 238
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.66 E-value=5.5e-16 Score=156.19 Aligned_cols=158 Identities=24% Similarity=0.315 Sum_probs=123.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+++|.+|+|||+|+.+++...+...+.+.+. +.|...+.+++..+.+.|+||+|++.|..|+..++..+|++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie---d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF 78 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE---DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGF 78 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc---ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEE
Confidence 357899999999999999999999998877666443 56777777889999999999999999999999999999999
Q ss_pred EEEEEecCCCChhhHHH-HHHH---H-hcCCCEEEEEeCCCCCCC--ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQTNEA-IAHA---K-AAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~qt~Ei-L~~a---k-~~~vPIIVViNKiDL~~a--~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
++||++++....+.... +.++ + ...+|+|+|+||+|+... ...+.-..+. ..| .++|+++||+..
T Consensus 79 ~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la------~~~--~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 79 LLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALA------RSW--GCAFIETSAKLN 150 (196)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHH------Hhc--CCcEEEeeccCC
Confidence 99999998654444322 2222 2 245799999999999652 1222222221 123 467999999999
Q ss_pred CCHHHHHHHHHHHHhh
Q 004746 643 EKVDDLLETIMLVAEL 658 (732)
Q Consensus 643 eGIdeLfe~Ii~lael 658 (732)
.+++++|..|......
T Consensus 151 ~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 151 YNVDEVFYELVREIRL 166 (196)
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999986654
No 239
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.66 E-value=1.1e-15 Score=181.00 Aligned_cols=152 Identities=18% Similarity=0.248 Sum_probs=113.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhh----------c
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMR----------A 560 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r----------~ 560 (732)
.++|+++|++|+|||||+|+|.+.+..++..+|+|.+..... +...++.++||||||+..|.... .
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~----~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ----FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEE----EEcCceEEEEEECCCccccccccccccHHHHHHH
Confidence 468999999999999999999988777788899998753333 23455689999999987765321 1
Q ss_pred ccc--cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC-ChHHHHHHHHHcCCCCCCCCCCCCEEEE
Q 004746 561 RGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQI 637 (732)
Q Consensus 561 r~~--~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a-~~erv~~eL~elgl~~e~~gg~ipiVeV 637 (732)
.++ ..+|++|+|+|+++.. ....++.++...++|+|+|+||+|+.+. ......+.+.+. ..++++++
T Consensus 79 ~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~--------LG~pVvpi 148 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSAR--------LGCPVIPL 148 (772)
T ss_pred HHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHH--------hCCCEEEE
Confidence 222 4789999999998743 2344556677789999999999998532 222223333321 13689999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 004746 638 SALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 638 SAKtGeGIdeLfe~Ii~la 656 (732)
||++|+|++++++.+....
T Consensus 149 SA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 149 VSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EeecCCCHHHHHHHHHHhh
Confidence 9999999999999998653
No 240
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.64 E-value=1.4e-15 Score=153.79 Aligned_cols=148 Identities=17% Similarity=0.161 Sum_probs=97.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeec-----CCcceeEEEEeCCCccccchhhccccccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV-----DGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~i-----dgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
++|+++|..++|||||+++|....+...+.+ |.+..+....+.+ ++..+.+.||||+|++.|..++..+++.+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~--Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~a 78 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSW--TVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQV 78 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCc--ceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcC
Confidence 4799999999999999999998887655444 4443333222222 24668899999999999999999999999
Q ss_pred CeEEEEEEecCCCChhhH-HHHHHHH----------------------hcCCCEEEEEeCCCCCCCChHHHHHHHHHcCC
Q 004746 567 DIAVIVVAADDGIRPQTN-EAIAHAK----------------------AAGVPIVIAINKIDKDGANPERVMQELSSIGL 623 (732)
Q Consensus 567 DiVILVVDasdgi~~qt~-EiL~~ak----------------------~~~vPIIVViNKiDL~~a~~erv~~eL~elgl 623 (732)
|++|||||+++....+.. .++..+. ..++|+|+|+||+|+...........+...+.
T Consensus 79 d~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ 158 (202)
T cd04102 79 NGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGF 158 (202)
T ss_pred CEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhh
Confidence 999999999985433222 2222221 13689999999999854211111111111222
Q ss_pred CCCCCCCCCCEEEEecCCCC
Q 004746 624 MPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 624 ~~e~~gg~ipiVeVSAKtGe 643 (732)
...++ .++.+++++.+..
T Consensus 159 ia~~~--~~~~i~~~c~~~~ 176 (202)
T cd04102 159 VAEQG--NAEEINLNCTNGR 176 (202)
T ss_pred HHHhc--CCceEEEecCCcc
Confidence 22222 3567777877653
No 241
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.64 E-value=2e-15 Score=151.70 Aligned_cols=160 Identities=21% Similarity=0.283 Sum_probs=105.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccccc-CeEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT-DIAV 570 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A-DiVI 570 (732)
++|+|+|++++|||||+++|....+..+. ..++..+.. +..........+.|||||||+.|..++..+++.+ +++|
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~-~s~~~~~~~--~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV 77 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV-TSIEPNVAT--FILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIV 77 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc-CcEeecceE--EEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEE
Confidence 47999999999999999999987664332 222222222 2221123456899999999999988888888888 9999
Q ss_pred EEEEecCCC--ChhhHHHH----HHHH--hcCCCEEEEEeCCCCCCCCh-HHHHHHHHH----------cC---------
Q 004746 571 IVVAADDGI--RPQTNEAI----AHAK--AAGVPIVIAINKIDKDGANP-ERVMQELSS----------IG--------- 622 (732)
Q Consensus 571 LVVDasdgi--~~qt~EiL----~~ak--~~~vPIIVViNKiDL~~a~~-erv~~eL~e----------lg--------- 622 (732)
||||+.+.. .....+++ .... ..++|+++|+||+|+..+.. +.+.+.++. ..
T Consensus 78 ~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~ 157 (203)
T cd04105 78 FVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEG 157 (203)
T ss_pred EEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 999998752 11222222 2111 14799999999999865433 222222221 00
Q ss_pred ------------CCCCCCCCCCCEEEEecCCCC-CHHHHHHHHHH
Q 004746 623 ------------LMPEDWGGDIPMVQISALKGE-KVDDLLETIML 654 (732)
Q Consensus 623 ------------l~~e~~gg~ipiVeVSAKtGe-GIdeLfe~Ii~ 654 (732)
+.+......+.|+++|++.+. |++.+.+||..
T Consensus 158 ~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 158 SKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 011112356788999999876 69999999853
No 242
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.64 E-value=1.2e-15 Score=176.12 Aligned_cols=145 Identities=21% Similarity=0.283 Sum_probs=106.7
Q ss_pred eCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh------hcccc--cccCeE
Q 004746 498 GHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM------RARGA--RVTDIA 569 (732)
Q Consensus 498 G~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~------r~r~~--~~ADiV 569 (732)
|++|+|||||+|+|.+.++.++..+|+|.+.....+.+ ++ ..++||||||++.|... ...++ ..+|++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~--~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvv 76 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF--QG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLV 76 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE--CC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEE
Confidence 89999999999999988887888899998765444442 33 46899999999887543 22222 478999
Q ss_pred EEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHH
Q 004746 570 VIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (732)
Q Consensus 570 ILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeL 648 (732)
++|+|+++. ....+...++...++|+++|+||+|+.+.. .....+.+.+. .+++++++||++|+|++++
T Consensus 77 I~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~--------lg~pvv~tSA~tg~Gi~eL 146 (591)
T TIGR00437 77 VNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEER--------LGVPVVPTSATEGRGIERL 146 (591)
T ss_pred EEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHH--------cCCCEEEEECCCCCCHHHH
Confidence 999999862 234455556666789999999999985322 11122333321 1368999999999999999
Q ss_pred HHHHHHHH
Q 004746 649 LETIMLVA 656 (732)
Q Consensus 649 fe~Ii~la 656 (732)
+++|....
T Consensus 147 ~~~i~~~~ 154 (591)
T TIGR00437 147 KDAIRKAI 154 (591)
T ss_pred HHHHHHHh
Confidence 99998653
No 243
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.4e-15 Score=164.80 Aligned_cols=238 Identities=28% Similarity=0.383 Sum_probs=170.0
Q ss_pred hcccCCCCEEEEEeCCCCCHHHHHHHHHcCCcc-------------------------------ccccCCceeeeeeEEE
Q 004746 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-------------------------------AAEAGGITQGIGAYKV 533 (732)
Q Consensus 485 ~~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~-------------------------------vse~~GtTrdI~~y~v 533 (732)
+....+..+++|+||+++||||+-..|+...-. .....|-|..++...+
T Consensus 73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 444567889999999999999987765321000 0123345555554444
Q ss_pred EeecCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCC-------CChhhHHHHHHHHhcCCC-EEEEEeCCC
Q 004746 534 QVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-------IRPQTNEAIAHAKAAGVP-IVIAINKID 605 (732)
Q Consensus 534 ~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdg-------i~~qt~EiL~~ak~~~vP-IIVViNKiD 605 (732)
+. ...+++++|+|||..|...+..++.+||+.+||+.+..+ --.|++++...++..++. .|+++||+|
T Consensus 153 Et----e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMd 228 (501)
T KOG0459|consen 153 ET----ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMD 228 (501)
T ss_pred Ee----cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEecc
Confidence 43 335799999999999999999999999999999998643 235899999999988887 899999999
Q ss_pred CCCC--ChHHHHH-------HHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHH----------HHHhhhhhccCCC
Q 004746 606 KDGA--NPERVMQ-------ELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIM----------LVAELQELKANPH 666 (732)
Q Consensus 606 L~~a--~~erv~~-------eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii----------~lael~~lk~~p~ 666 (732)
-+.. ..+++.+ .|..+++... .+..|+++|..+|.++.+..+... -+..+..+....+
T Consensus 229 dPtvnWs~eRy~E~~~k~~~fLr~~g~n~~---~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~ 305 (501)
T KOG0459|consen 229 DPTVNWSNERYEECKEKLQPFLRKLGFNPK---PDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDELPHLERILN 305 (501)
T ss_pred CCccCcchhhHHHHHHHHHHHHHHhcccCC---CCceeeecccccccchhhcccccCCcccCCccceehhccCcccccCC
Confidence 7653 3333322 2333444332 467899999999999998775211 1111222233334
Q ss_pred CCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 667 RNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 667 r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
.|+...|.+-+ +..|+|+.|.+.+|.++.|+.+++-+ +...|.+|+++ ...++.+.||+.|.|
T Consensus 306 GP~~~pI~~Ky--kdmGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~d-dvE~~~~~pGenvk~ 370 (501)
T KOG0459|consen 306 GPIRCPVANKY--KDMGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSD-DVETDRVAPGENVKL 370 (501)
T ss_pred CCEEeehhhhc--cccceEEEEEecccceecCCeEEEccCCcceEEEEEecc-cceeeeccCCcceEE
Confidence 44444444333 34699999999999999999999954 56789999999 688999999999864
No 244
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.63 E-value=5.3e-16 Score=150.42 Aligned_cols=154 Identities=19% Similarity=0.163 Sum_probs=114.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
-.++|+++|..-+|||||+-++...+|...... |....+....+.+.+....+.||||+|+|.|..+-..||+.++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHls--TlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLS--TLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHH--HHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 357899999999999999999998888654432 333344445555667778899999999999999999999999999
Q ss_pred EEEEEecCCCChhhHH-HH---HHHHhcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQTNE-AI---AHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~qt~E-iL---~~ak~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|||||++|.-..|... +. +.+....+-++||+||+||... ..++.....+.. ...++++||+.+
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesv---------GA~y~eTSAk~N 160 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESV---------GALYMETSAKDN 160 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhh---------chhheecccccc
Confidence 9999999865554322 22 3333345679999999999532 122222222222 256999999999
Q ss_pred CCHHHHHHHHHH
Q 004746 643 EKVDDLLETIML 654 (732)
Q Consensus 643 eGIdeLfe~Ii~ 654 (732)
.||.+||+.|..
T Consensus 161 ~Gi~elFe~Lt~ 172 (218)
T KOG0088|consen 161 VGISELFESLTA 172 (218)
T ss_pred cCHHHHHHHHHH
Confidence 999999998864
No 245
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.62 E-value=1.6e-15 Score=146.04 Aligned_cols=135 Identities=26% Similarity=0.336 Sum_probs=100.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCC----ccccchhhcccccccC
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----HEAFGAMRARGARVTD 567 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG----hE~f~~~r~r~~~~AD 567 (732)
.+|.+||.+++|||||+++|.+.... ...|+.+.++ =.+||||| +..|..........||
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~----~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad 65 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR----YKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDAD 65 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC----cCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCC
Confidence 37999999999999999999986543 2236554211 14699999 2333333344457899
Q ss_pred eEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCC--CCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 568 IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD--GANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 568 iVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~--~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
++++|.|+++.....- -.++...+.|+|-|+||+|+. +++.++..+.|...|.. .+|++|+.+|+||
T Consensus 66 ~V~ll~dat~~~~~~p---P~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~--------~if~vS~~~~eGi 134 (143)
T PF10662_consen 66 VVLLLQDATEPRSVFP---PGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK--------EIFEVSAVTGEGI 134 (143)
T ss_pred EEEEEecCCCCCccCC---chhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC--------CeEEEECCCCcCH
Confidence 9999999997433222 233445679999999999998 67788888888887752 4799999999999
Q ss_pred HHHHHHHH
Q 004746 646 DDLLETIM 653 (732)
Q Consensus 646 deLfe~Ii 653 (732)
++|.++|.
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 99999874
No 246
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.62 E-value=8.5e-16 Score=160.14 Aligned_cols=124 Identities=27% Similarity=0.400 Sum_probs=95.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccc------------------cCCceeeeeeEEEEeecCCcceeEEEEeCCCccc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAE------------------AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse------------------~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~ 554 (732)
+|+|+|++|+|||||+++|+........ ..++|... ....+ ...++.++||||||+.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~--~~~~~--~~~~~~i~liDtPG~~~ 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSIST--SVAPL--EWKGHKINLIDTPGYAD 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccc--eeEEE--EECCEEEEEEECcCHHH
Confidence 5899999999999999999743211100 11222222 11222 23457899999999999
Q ss_pred cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHH
Q 004746 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS 620 (732)
Q Consensus 555 f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~e 620 (732)
|...+..++..+|++|+|+|++++...++..++.++...++|+++++||+|+...+.......+.+
T Consensus 77 f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~ 142 (268)
T cd04170 77 FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQE 142 (268)
T ss_pred HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHH
Confidence 888888889999999999999999998888888888888999999999999988777766666654
No 247
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=8.6e-15 Score=145.17 Aligned_cols=160 Identities=24% Similarity=0.347 Sum_probs=128.0
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccc-------cccCC---ceeeeeeEEEEeecCCcceeEEEEeCCCccccc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA-------AEAGG---ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~v-------se~~G---tTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~ 556 (732)
+.....+|+|+|..++||||++.++....... ....+ +|..+++..+.+. .+..++|+|||||++|.
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~---~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD---EDTGVHLFGTPGQERFK 82 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc---CcceEEEecCCCcHHHH
Confidence 34556899999999999999999998655311 12223 7777777776653 33579999999999999
Q ss_pred hhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcC-CCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEE
Q 004746 557 AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAG-VPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMV 635 (732)
Q Consensus 557 ~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~-vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiV 635 (732)
.||..+.+.++++|+++|.+.+......++++.+...+ +|++|++||.|+.++.+.+..+++....+ ...++|
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~------~~~~vi 156 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL------LSVPVI 156 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc------CCCcee
Confidence 99999999999999999999887777778888887777 99999999999998766655555554432 247899
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q 004746 636 QISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 636 eVSAKtGeGIdeLfe~Ii~l 655 (732)
+++|..+++..+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999999887653
No 248
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.61 E-value=1.2e-15 Score=148.60 Aligned_cols=155 Identities=19% Similarity=0.234 Sum_probs=114.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEE--EEeecCCcceeEEEEeCCCccccchhhccccccc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYK--VQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~--v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
...+++.+||+.-+||||||.++...+++.-..| |.++++|. +++. .|..+++.+|||+|+|.|......|++++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdp--tvgvdffarlie~~-pg~riklqlwdtagqerfrsitksyyrns 82 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDP--TVGVDFFARLIELR-PGYRIKLQLWDTAGQERFRSITKSYYRNS 82 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCC--ccchHHHHHHHhcC-CCcEEEEEEeeccchHHHHHHHHHHhhcc
Confidence 3456899999999999999999999998754444 66666654 3332 57778999999999999999999999999
Q ss_pred CeEEEEEEecCCCChhhHH-HHHHH----HhcCCC-EEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEE
Q 004746 567 DIAVIVVAADDGIRPQTNE-AIAHA----KAAGVP-IVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQI 637 (732)
Q Consensus 567 DiVILVVDasdgi~~qt~E-iL~~a----k~~~vP-IIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeV 637 (732)
-++++|||+++....+..+ ++..+ .....+ +.+|+.|+||.. .+.++.......++ ..|+++
T Consensus 83 vgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg---------M~FVET 153 (213)
T KOG0091|consen 83 VGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG---------MAFVET 153 (213)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcC---------ceEEEe
Confidence 9999999999854333322 22222 212222 789999999953 22333333333333 569999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 004746 638 SALKGEKVDDLLETIMLV 655 (732)
Q Consensus 638 SAKtGeGIdeLfe~Ii~l 655 (732)
||++|.|+++.|..|...
T Consensus 154 Sak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 154 SAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred cccCCCcHHHHHHHHHHH
Confidence 999999999999998864
No 249
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.61 E-value=7.7e-15 Score=145.99 Aligned_cols=163 Identities=20% Similarity=0.201 Sum_probs=112.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
.+|+|+|..|+|||||+++|.+..+...+.+.+...+...... .....+.+.+|||+|++.|..++..++..++++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIE--PYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEE--eCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 7999999999999999999999888766665444333222222 23336789999999999999999999999999999
Q ss_pred EEEecC-CCC-hhhHHHHHHHHh---cCCCEEEEEeCCCCCCCChHH--HHHHH-------HHcCCCCCCCCCCCCEEEE
Q 004746 572 VVAADD-GIR-PQTNEAIAHAKA---AGVPIVIAINKIDKDGANPER--VMQEL-------SSIGLMPEDWGGDIPMVQI 637 (732)
Q Consensus 572 VVDasd-gi~-~qt~EiL~~ak~---~~vPIIVViNKiDL~~a~~er--v~~eL-------~elgl~~e~~gg~ipiVeV 637 (732)
|+|... ... ....++...+.. .+.|+|+++||+|+....... +...+ ...............++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999986 222 222333333333 358999999999996643211 11110 0000000000112348999
Q ss_pred ecC--CCCCHHHHHHHHHHHH
Q 004746 638 SAL--KGEKVDDLLETIMLVA 656 (732)
Q Consensus 638 SAK--tGeGIdeLfe~Ii~la 656 (732)
||+ ++.+|.++|..+....
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHH
Confidence 999 9999999999988655
No 250
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=7.2e-15 Score=165.43 Aligned_cols=237 Identities=25% Similarity=0.283 Sum_probs=178.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc------------------ccccCCceeeeeeEEEEeecCCcceeEEEEeCCC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~------------------vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG 551 (732)
+..+|.|+-|-++|||||.++++..... .....|||+...+..+ .+..+.+++|||||
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~----~w~~~~iNiIDTPG 113 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYF----TWRDYRINIIDTPG 113 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeee----eeccceeEEecCCC
Confidence 5568999999999999999998632111 1223456655433332 23478999999999
Q ss_pred ccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCCC-----
Q 004746 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP----- 625 (732)
Q Consensus 552 hE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~~----- 625 (732)
|-+|.....+.++..|++++|+|+..++..|+.-.+++++.+++|.|..+||+|..++++-+..+++... +...
T Consensus 114 HvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqi 193 (721)
T KOG0465|consen 114 HVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQI 193 (721)
T ss_pred ceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEc
Confidence 9999999999999999999999999999999999999999999999999999999877766655554331 0000
Q ss_pred ------------------------------------------------------------------C--C----------
Q 004746 626 ------------------------------------------------------------------E--D---------- 627 (732)
Q Consensus 626 ------------------------------------------------------------------e--~---------- 627 (732)
+ .
T Consensus 194 Pig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aI 273 (721)
T KOG0465|consen 194 PIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAI 273 (721)
T ss_pred cccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHH
Confidence 0 0
Q ss_pred -----CCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhh------h------------ccCCCC-CccceEEEEeeccCCC
Q 004746 628 -----WGGDIPMVQISALKGEKVDDLLETIMLVAELQE------L------------KANPHR-NAKGTVIEAGLHKSKG 683 (732)
Q Consensus 628 -----~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~------l------------k~~p~r-~a~g~Vies~~dkgrG 683 (732)
-+..+|++.-||..+.||.-|+++++....-+. + ...++. |+.+..|....++. |
T Consensus 274 Rr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~f-G 352 (721)
T KOG0465|consen 274 RRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGRF-G 352 (721)
T ss_pred HHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecCc-c
Confidence 013478999999999999999999986533210 0 111222 78888888887777 9
Q ss_pred ceEEEEEEeeEEecCCEEEEcCeeE-----EEEEEEcCCCCccceecCCCCee
Q 004746 684 PVATFILQNGTLKKGDVVVCGEAFG-----KVRALFDDSGNRVDEAGPSIPVQ 731 (732)
Q Consensus 684 ~VatglV~~GtLk~GD~Iv~G~~~g-----kVrsI~~~~g~~V~~A~pG~~V~ 731 (732)
-..+++|.+|+|++||+|+-..+.- |.-.|+.+.-++|+++.+|+...
T Consensus 353 qLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~a 405 (721)
T KOG0465|consen 353 QLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICA 405 (721)
T ss_pred ceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceee
Confidence 9999999999999999999844332 33345555567899999998654
No 251
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.59 E-value=1.9e-14 Score=148.07 Aligned_cols=148 Identities=26% Similarity=0.209 Sum_probs=100.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccc-------hhhcccccc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG-------AMRARGARV 565 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~-------~~r~r~~~~ 565 (732)
+|+++|.+|+|||||+++|.+........+++|.+.....+.+ .+..+++|||||+..+. ......++.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ 77 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY----KGAKIQLLDLPGIIEGAADGKGRGRQVIAVART 77 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE----CCeEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence 6899999999999999999987766666677776654333332 34689999999974332 123346789
Q ss_pred cCeEEEEEEecCCCCh------------------------------------------hhHHHHH-HHHh----------
Q 004746 566 TDIAVIVVAADDGIRP------------------------------------------QTNEAIA-HAKA---------- 592 (732)
Q Consensus 566 ADiVILVVDasdgi~~------------------------------------------qt~EiL~-~ak~---------- 592 (732)
+|++++|+|+++.... .+.+.+. .++.
T Consensus 78 ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 78 ADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI 157 (233)
T ss_pred CCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence 9999999998753210 0001111 1111
Q ss_pred -----------------cCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 593 -----------------AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 593 -----------------~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
..+|+++|+||+|+... ++.. .+.. ...++++||++|.|+++|++.|...
T Consensus 158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~--~~~~-~~~~----------~~~~~~~SA~~g~gi~~l~~~i~~~ 224 (233)
T cd01896 158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI--EELD-LLAR----------QPNSVVISAEKGLNLDELKERIWDK 224 (233)
T ss_pred ccCCCHHHHHHHHhCCceEeeEEEEEECccCCCH--HHHH-HHhc----------CCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 12589999999998532 2222 1111 2358999999999999999999875
Q ss_pred Hh
Q 004746 656 AE 657 (732)
Q Consensus 656 ae 657 (732)
..
T Consensus 225 L~ 226 (233)
T cd01896 225 LG 226 (233)
T ss_pred hC
Confidence 44
No 252
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.3e-14 Score=138.51 Aligned_cols=153 Identities=22% Similarity=0.202 Sum_probs=114.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
..++-.|+|+-|+|||+|+..+...+|...- ..|+++.+..-.+.+.|..+++.||||+|+|+|......+++.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadc--phtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcC--CcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 3568899999999999999999988776432 23555655555556789999999999999999999999999999999
Q ss_pred EEEEEecCCCChhh-HHHHHHHHhc---CCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQT-NEAIAHAKAA---GVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~~ak~~---~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
++|+|++....... -.++..++.. +.-|++++||.||.. ...++..+..++.+ ..|+++||++|
T Consensus 88 lmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeeng---------l~fle~saktg 158 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENG---------LMFLEASAKTG 158 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcC---------eEEEEeccccc
Confidence 99999986433222 2233334433 333899999999954 34555555555544 46999999999
Q ss_pred CCHHHHHHHHH
Q 004746 643 EKVDDLLETIM 653 (732)
Q Consensus 643 eGIdeLfe~Ii 653 (732)
+|+++.|-.-.
T Consensus 159 ~nvedafle~a 169 (215)
T KOG0097|consen 159 QNVEDAFLETA 169 (215)
T ss_pred CcHHHHHHHHH
Confidence 99998775443
No 253
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.57 E-value=2.5e-14 Score=139.61 Aligned_cols=158 Identities=22% Similarity=0.267 Sum_probs=114.4
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
..+..+|.|+|..|+|||||+++|.+...... ..|.++...++. .+.+.+++||..|+..+...|..|+..+|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~~~i---~pt~gf~Iktl~----~~~~~L~iwDvGGq~~lr~~W~nYfestd 85 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDTDTI---SPTLGFQIKTLE----YKGYTLNIWDVGGQKTLRSYWKNYFESTD 85 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCcccc---CCccceeeEEEE----ecceEEEEEEcCCcchhHHHHHHhhhccC
Confidence 34568999999999999999999997663211 125554444444 35678999999999999999999999999
Q ss_pred eEEEEEEecCCCCh-hhHHHHHH----HHhcCCCEEEEEeCCCCCCC-ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 568 IAVIVVAADDGIRP-QTNEAIAH----AKAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 568 iVILVVDasdgi~~-qt~EiL~~----ak~~~vPIIVViNKiDL~~a-~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
++|+|||.++.... +....+.. -+.++.|++|+.||.|++.+ ..+.+...+.-..+.. ..+++++-|||.+
T Consensus 86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~k---s~~~~l~~cs~~t 162 (185)
T KOG0073|consen 86 GLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAK---SHHWRLVKCSAVT 162 (185)
T ss_pred eEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhcc---ccCceEEEEeccc
Confidence 99999999875432 23333332 34468899999999999854 3333332221111111 1357899999999
Q ss_pred CCCHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLV 655 (732)
Q Consensus 642 GeGIdeLfe~Ii~l 655 (732)
|+++.+-++||...
T Consensus 163 ge~l~~gidWL~~~ 176 (185)
T KOG0073|consen 163 GEDLLEGIDWLCDD 176 (185)
T ss_pred cccHHHHHHHHHHH
Confidence 99999999998753
No 254
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=8e-15 Score=145.30 Aligned_cols=158 Identities=20% Similarity=0.261 Sum_probs=122.4
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
..+..+|+++|--++||||+++.|...++..+ .| |.+++...+++ +++.+++||..|++.+...|..|++.++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vP--TiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~ 86 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VP--TIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQ 86 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CC--ccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCc
Confidence 45567899999999999999999987766544 33 77776666665 3679999999999999999999999999
Q ss_pred eEEEEEEecCCCC--hhhHHHHHHHHh---cCCCEEEEEeCCCCCCC-ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 568 IAVIVVAADDGIR--PQTNEAIAHAKA---AGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 568 iVILVVDasdgi~--~qt~EiL~~ak~---~~vPIIVViNKiDL~~a-~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
++|||+|.+|... +.-.|....+.. .+.|+++.+||.|++++ +..++.+.+.-..+....| .+..|+|.+
T Consensus 87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w----~iq~~~a~~ 162 (181)
T KOG0070|consen 87 GLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNW----HIQSTCAIS 162 (181)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCc----EEeeccccc
Confidence 9999999998432 212222233322 37899999999999876 4566666666555555554 588899999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|+|+.+-++||....
T Consensus 163 G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 163 GEGLYEGLDWLSNNL 177 (181)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999998654
No 255
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.56 E-value=6.4e-15 Score=148.52 Aligned_cols=161 Identities=23% Similarity=0.300 Sum_probs=119.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecC-CcceeEEEEeCCCccccchhhcccccccCe
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-GKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~id-gk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
..++++|+|+..+|||+|+..+....|...+.+.. ++.|...+.++ ++.+.+.+|||+|+++|...|...+..+|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTV---Fdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdv 79 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTV---FDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDV 79 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeE---EccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCE
Confidence 35789999999999999999999888877776633 36677777784 999999999999999999999889999999
Q ss_pred EEEEEEecCCCC-----hhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCC---------CCCCCCCCE
Q 004746 569 AVIVVAADDGIR-----PQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMP---------EDWGGDIPM 634 (732)
Q Consensus 569 VILVVDasdgi~-----~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~---------e~~gg~ipi 634 (732)
+|+||++.+... ..|...+.+.. .++|+|+|++|.||... ......+...+..+ ....+...|
T Consensus 80 fl~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d--~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y 156 (198)
T KOG0393|consen 80 FLLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDD--PSTLEKLQRQGLEPVTYEQGLELAKEIGAVKY 156 (198)
T ss_pred EEEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhC--HHHHHHHHhccCCcccHHHHHHHHHHhCccee
Confidence 999999987432 22222222222 47999999999999621 12222222211111 011245789
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q 004746 635 VQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~la 656 (732)
++|||++..|+.+.|+..++.+
T Consensus 157 ~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 157 LECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred eeehhhhhCCcHHHHHHHHHHH
Confidence 9999999999999999888655
No 256
>PLN00023 GTP-binding protein; Provisional
Probab=99.56 E-value=2.6e-14 Score=154.03 Aligned_cols=119 Identities=18% Similarity=0.134 Sum_probs=87.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecC-------------CcceeEEEEeCCCccc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-------------GKLQPCVFLDTPGHEA 554 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~id-------------gk~i~ItLIDTPGhE~ 554 (732)
....++|+|+|+.+||||||+++|....+...+.+ |++..++...+.++ +..+.+.||||+|++.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~p--TIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQ--TIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCC--ceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 34457999999999999999999998877654444 44443333323332 2457899999999999
Q ss_pred cchhhcccccccCeEEEEEEecCCCChhh-HHHHHHHHh---------------cCCCEEEEEeCCCCCC
Q 004746 555 FGAMRARGARVTDIAVIVVAADDGIRPQT-NEAIAHAKA---------------AGVPIVIAINKIDKDG 608 (732)
Q Consensus 555 f~~~r~r~~~~ADiVILVVDasdgi~~qt-~EiL~~ak~---------------~~vPIIVViNKiDL~~ 608 (732)
|..++..+++.+|++|||||+++...... ..++..+.. .++|+|||+||+||..
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 99999999999999999999998433322 223333332 1478999999999954
No 257
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.8e-15 Score=146.86 Aligned_cols=153 Identities=19% Similarity=0.229 Sum_probs=110.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecC---------CcceeEEEEeCCCccccchhhccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD---------GKLQPCVFLDTPGHEAFGAMRARG 562 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~id---------gk~i~ItLIDTPGhE~f~~~r~r~ 562 (732)
++...+|++|+||||++.++...+|...-+ +|.+|++....+.++ +..+.+.+|||+|+|+|..+...+
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFI--sTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFI--STVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeE--EEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 467889999999999999998877764433 255555544333222 234678999999999999999999
Q ss_pred ccccCeEEEEEEecCCCC-hhhHHHHHHHHh----cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCE
Q 004746 563 ARVTDIAVIVVAADDGIR-PQTNEAIAHAKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPM 634 (732)
Q Consensus 563 ~~~ADiVILVVDasdgi~-~qt~EiL~~ak~----~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipi 634 (732)
++.|-++||+||.++.-. .....++.+++. .+.-||+++||+||.+. +.++..+....++ +||
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyg---------lPY 158 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYG---------LPY 158 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhC---------CCe
Confidence 999999999999997422 223445554443 24459999999999653 2222222233333 689
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q 004746 635 VQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~l 655 (732)
|++||-+|.||++..+.|+.+
T Consensus 159 fETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 159 FETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred eeeccccCcCHHHHHHHHHHH
Confidence 999999999999988887754
No 258
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.55 E-value=2.8e-14 Score=150.83 Aligned_cols=172 Identities=23% Similarity=0.287 Sum_probs=112.4
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc------cccchh--
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH------EAFGAM-- 558 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh------E~f~~~-- 558 (732)
..+...|++||.||+|||||.|.+++.++. ++....||++-.... +..+...+.|+||||. ..+..+
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi----~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI----ITSGETQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE----EecCceEEEEecCCcccccchhhhHHHHHH
Confidence 345678999999999999999999998865 667777777642222 3345678999999992 222222
Q ss_pred ----hcccccccCeEEEEEEecCCCChhhHHHHHHHHh-cCCCEEEEEeCCCCCCCCh--------------HH-HHHHH
Q 004746 559 ----RARGARVTDIAVIVVAADDGIRPQTNEAIAHAKA-AGVPIVIAINKIDKDGANP--------------ER-VMQEL 618 (732)
Q Consensus 559 ----r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~-~~vPIIVViNKiDL~~a~~--------------er-v~~eL 618 (732)
-...+..||++++|+|+++.-.+.....+..++. .++|-|+|.||+|...... .. ..+..
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 2245688999999999996322222223333322 3799999999999743110 00 00111
Q ss_pred HHcCCCC--------CCCCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhcc
Q 004746 619 SSIGLMP--------EDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKA 663 (732)
Q Consensus 619 ~elgl~~--------e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~ 663 (732)
++....+ -.|.+.-.+|.+||++|+||++|.++|+.++...+++.
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y 277 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKY 277 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCC
Confidence 1111111 11444556999999999999999999998776555443
No 259
>PTZ00099 rab6; Provisional
Probab=99.54 E-value=5.3e-14 Score=138.79 Aligned_cols=124 Identities=21% Similarity=0.179 Sum_probs=91.3
Q ss_pred ceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhh-HHHHHHHH---hcCCCEEE
Q 004746 524 ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQT-NEAIAHAK---AAGVPIVI 599 (732)
Q Consensus 524 tTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt-~EiL~~ak---~~~vPIIV 599 (732)
.|.++.++...+.+++..+.+.||||||++.|..++..+++.+|++|||||+++....+. .+++..+. ..++|+|+
T Consensus 11 ~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piil 90 (176)
T PTZ00099 11 STIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIAL 90 (176)
T ss_pred CccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 366666666666778888999999999999999999999999999999999998533222 22333322 23678999
Q ss_pred EEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 600 AINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 600 ViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
|+||+|+... ..++........ ...|+++||++|.||+++|++|+...
T Consensus 91 VgNK~DL~~~~~v~~~e~~~~~~~~---------~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 91 VGNKTDLGDLRKVTYEEGMQKAQEY---------NTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred EEECcccccccCCCHHHHHHHHHHc---------CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999542 222322222222 24689999999999999999998654
No 260
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.54 E-value=1.6e-14 Score=138.84 Aligned_cols=159 Identities=24% Similarity=0.270 Sum_probs=117.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
...+.++|-.++|||||+|.+....+. +.-+.|.+++.+.+ ......+.+||.+|+..|..|+.+|++.+++++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~--edmiptvGfnmrk~----tkgnvtiklwD~gGq~rfrsmWerycR~v~aiv 93 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYL--EDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIV 93 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccch--hhhcccccceeEEe----ccCceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence 356999999999999999988766554 23345777666654 345678999999999999999999999999999
Q ss_pred EEEEecCCC--C---hhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 571 IVVAADDGI--R---PQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 571 LVVDasdgi--~---~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
+|+|+.+.- . .+...++......++|++|.+||+|++++-... ..+..+++..-. ...+-+|.+|+++..||
T Consensus 94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~--~li~rmgL~sit-dREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 94 YVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI--ALIERMGLSSIT-DREVCCFSISCKEKVNI 170 (186)
T ss_pred EEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH--HHHHHhCccccc-cceEEEEEEEEcCCccH
Confidence 999999832 1 111222222234589999999999998764322 223333433211 23577999999999999
Q ss_pred HHHHHHHHHHHhh
Q 004746 646 DDLLETIMLVAEL 658 (732)
Q Consensus 646 deLfe~Ii~lael 658 (732)
+.+++||......
T Consensus 171 d~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 171 DITLDWLIEHSKS 183 (186)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999976643
No 261
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.54 E-value=4.9e-15 Score=140.38 Aligned_cols=181 Identities=20% Similarity=0.207 Sum_probs=124.3
Q ss_pred EEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEe
Q 004746 496 IMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAA 575 (732)
Q Consensus 496 IVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDa 575 (732)
++|++.+|||+|+-++....+..+. --.|.+|++...-+.+++..+++++|||+|+|+|......|++.+|..+|+||+
T Consensus 2 llgds~~gktcllir~kdgafl~~~-fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGN-FISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred ccccCccCceEEEEEeccCceecCc-eeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 6899999999999776654443221 112667777777788899999999999999999999999999999999999999
Q ss_pred cCCCChhhH-HHHHHHHh---cCCCEEEEEeCCCCCCC--ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHH
Q 004746 576 DDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (732)
Q Consensus 576 sdgi~~qt~-EiL~~ak~---~~vPIIVViNKiDL~~a--~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLf 649 (732)
.+....... .++..++. ..+.+++++||||+... -....-+.+.+. + .+||.++||++|.|++..|
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~------y--~ipfmetsaktg~nvd~af 152 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEA------Y--GIPFMETSAKTGFNVDLAF 152 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHH------H--CCCceeccccccccHhHHH
Confidence 975443332 23333322 35678999999998431 111111222221 1 3789999999999999999
Q ss_pred HHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEE
Q 004746 650 ETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVAT 687 (732)
Q Consensus 650 e~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~Vat 687 (732)
-.|............|...+.- -.+..+.++|.++.
T Consensus 153 ~~ia~~l~k~~~~~~~~~~~~~--~~~v~~~~k~eia~ 188 (192)
T KOG0083|consen 153 LAIAEELKKLKMGAPPEGEFAD--HDSVADEGKGEIAR 188 (192)
T ss_pred HHHHHHHHHhccCCCCCCcccc--chhHHhcCCCcccc
Confidence 9988755444444444433222 22334567776653
No 262
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=4.7e-15 Score=156.10 Aligned_cols=235 Identities=25% Similarity=0.321 Sum_probs=168.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC---CccccccCCceeeeeeEEEEee-cCC--------------------------c
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT---KVAAAEAGGITQGIGAYKVQVP-VDG--------------------------K 540 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~---k~~vse~~GtTrdI~~y~v~i~-idg--------------------------k 540 (732)
.++|.-+||+.|||||++.++.+- +|...-...+|+.+++....++ .+. .
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 478999999999999999998754 3444556677877765443321 110 0
Q ss_pred ------ceeEEEEeCCCccccchhhcccccccCeEEEEEEecC-CCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCChH
Q 004746 541 ------LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPE 612 (732)
Q Consensus 541 ------~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasd-gi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~~e 612 (732)
-.++.|+|+|||+-+...+..++...|+++|++.+++ ..++|+-|++....-.... +|++-||+|+...+..
T Consensus 118 ~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A 197 (466)
T KOG0466|consen 118 EGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQA 197 (466)
T ss_pred CCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHHH
Confidence 1457899999999988888888889999999999987 4689999998877666654 8999999999643211
Q ss_pred -HHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEee--------ccCCC
Q 004746 613 -RVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGL--------HKSKG 683 (732)
Q Consensus 613 -rv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~--------dkgrG 683 (732)
+..+++. .|.........|++++||.-+.||+.+.+.|.....+ ...+-..+..-.|+.++- +.-+|
T Consensus 198 ~eq~e~I~--kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv--PvRdf~s~prlIVIRSFDVNkPG~ev~~lkG 273 (466)
T KOG0466|consen 198 LEQHEQIQ--KFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV--PVRDFTSPPRLIVIRSFDVNKPGSEVDDLKG 273 (466)
T ss_pred HHHHHHHH--HHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC--CccccCCCCcEEEEEeeccCCCCchhhcccC
Confidence 1111111 1222222345799999999999999999999875433 222333455667777663 34479
Q ss_pred ceEEEEEEeeEEecCCEEEE---------------cCeeEEEEEEEcCCCCccceecCCCCe
Q 004746 684 PVATFILQNGTLKKGDVVVC---------------GEAFGKVRALFDDSGNRVDEAGPSIPV 730 (732)
Q Consensus 684 ~VatglV~~GtLk~GD~Iv~---------------G~~~gkVrsI~~~~g~~V~~A~pG~~V 730 (732)
-|+-|.+..|.|++||.|.+ -+.+.+|.+++-+ ...++.|.||--+
T Consensus 274 gvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE-~n~L~~AvPGGLI 334 (466)
T KOG0466|consen 274 GVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAE-QNDLQFAVPGGLI 334 (466)
T ss_pred ccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhh-hccceeecCCcee
Confidence 99999999999999999877 1235678888887 4789999998543
No 263
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.51 E-value=1.6e-13 Score=136.95 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=99.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccc-cc----cCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch-----hhc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAA-AE----AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA-----MRA 560 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~v-se----~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~-----~r~ 560 (732)
+++|+|+|++|+|||||+|+|++..... +. ...+|+....|. ......+.+|||||...... +..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~-----~~~~~~l~l~DtpG~~~~~~~~~~~l~~ 75 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYP-----HPKFPNVTLWDLPGIGSTAFPPDDYLEE 75 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeee-----cCCCCCceEEeCCCCCcccCCHHHHHHH
Confidence 4689999999999999999999754321 11 111232221111 11234689999999643322 222
Q ss_pred ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC----------hHHHHHHHHHc--CCCCCCC
Q 004746 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN----------PERVMQELSSI--GLMPEDW 628 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~----------~erv~~eL~el--gl~~e~~ 628 (732)
..+..+|++|+|.| +.+......++..++..+.|+++|+||+|+...+ .+++.+++.+. .......
T Consensus 76 ~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 76 MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 33577899888753 4566667777788887889999999999984211 22333332221 0000111
Q ss_pred CCCCCEEEEecC--CCCCHHHHHHHHHHH
Q 004746 629 GGDIPMVQISAL--KGEKVDDLLETIMLV 655 (732)
Q Consensus 629 gg~ipiVeVSAK--tGeGIdeLfe~Ii~l 655 (732)
....++|.+|+. .+.|+..|.+.|...
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~ 182 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKD 182 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHH
Confidence 223589999999 689999999998853
No 264
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.5e-13 Score=157.75 Aligned_cols=149 Identities=24% Similarity=0.320 Sum_probs=110.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh------hcccc-
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM------RARGA- 563 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~------r~r~~- 563 (732)
..+|+++|+||+|||||+|+|++.+..++..+|.|.+..... +..++..++++|+||.-.+... ..+++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~----~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGK----LKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEE----EEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence 356999999999999999999999999999999997753333 3334557999999995433321 22333
Q ss_pred -cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC-----CChHHHHHHHHHcCCCCCCCCCCCCEEEE
Q 004746 564 -RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG-----ANPERVMQELSSIGLMPEDWGGDIPMVQI 637 (732)
Q Consensus 564 -~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~-----a~~erv~~eL~elgl~~e~~gg~ipiVeV 637 (732)
...|++|-|+|+++- +......-++...++|+|+++|++|... .+.++..+.+ .+|++++
T Consensus 79 ~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L------------GvPVv~t 144 (653)
T COG0370 79 EGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLL------------GVPVVPT 144 (653)
T ss_pred cCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHh------------CCCEEEE
Confidence 567999999999852 2233444556678999999999999732 2222222222 4799999
Q ss_pred ecCCCCCHHHHHHHHHHHHh
Q 004746 638 SALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 638 SAKtGeGIdeLfe~Ii~lae 657 (732)
||++|.|++++++.+....+
T Consensus 145 vA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 145 VAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred EeecCCCHHHHHHHHHHhcc
Confidence 99999999999999986544
No 265
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=1.6e-13 Score=146.58 Aligned_cols=162 Identities=23% Similarity=0.281 Sum_probs=114.6
Q ss_pred hhhcccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc------cccc
Q 004746 483 DLDKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH------EAFG 556 (732)
Q Consensus 483 ~~~~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh------E~f~ 556 (732)
++..+....+.|+|.|.||||||||+++|...+..+.+++.||.++...+++. +..++++|||||. |...
T Consensus 160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~----~~~R~QvIDTPGlLDRPl~ErN~ 235 (346)
T COG1084 160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER----GYLRIQVIDTPGLLDRPLEERNE 235 (346)
T ss_pred cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec----CCceEEEecCCcccCCChHHhcH
Confidence 34556677899999999999999999999999999999999999987777653 4458999999993 2222
Q ss_pred hhhc--ccc-cccCeEEEEEEecCCCChhhH---HHHHHHH-hcCCCEEEEEeCCCCCCC-ChHHHHHHHHHcCCCCCCC
Q 004746 557 AMRA--RGA-RVTDIAVIVVAADDGIRPQTN---EAIAHAK-AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDW 628 (732)
Q Consensus 557 ~~r~--r~~-~~ADiVILVVDasdgi~~qt~---EiL~~ak-~~~vPIIVViNKiDL~~a-~~erv~~eL~elgl~~e~~ 628 (732)
..+. ..+ ...++|||+||.+..+-.... .++..++ ..+.|+++|+||+|+.+. ..++....+...+
T Consensus 236 IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~------ 309 (346)
T COG1084 236 IERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEG------ 309 (346)
T ss_pred HHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHhhc------
Confidence 2222 122 567999999999963322222 2233333 245789999999998643 3333333333332
Q ss_pred CCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 629 GGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 629 gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
......+++..+.+++.+.+.+...+
T Consensus 310 --~~~~~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 310 --GEEPLKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred --cccccceeeeehhhHHHHHHHHHHHh
Confidence 23467789999999999998887653
No 266
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.50 E-value=5.2e-14 Score=127.14 Aligned_cols=109 Identities=24% Similarity=0.349 Sum_probs=74.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCcc----ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVA----AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~----vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
||+|+|..|+|||||+++|++.... .....+.+... ...........+.|||++|++.+.......+..+|+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 76 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGV----DVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADA 76 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEE----EEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEE----EEEEecCCceEEEEEecCccceecccccchhhcCcE
Confidence 6999999999999999999987765 11222223222 122234555569999999998888776666899999
Q ss_pred EEEEEEecCCCChhh-HH---HHHHHHh--cCCCEEEEEeCCC
Q 004746 569 AVIVVAADDGIRPQT-NE---AIAHAKA--AGVPIVIAINKID 605 (732)
Q Consensus 569 VILVVDasdgi~~qt-~E---iL~~ak~--~~vPIIVViNKiD 605 (732)
+|||||+++....+. .+ .+..+.. .++|+|+|+||.|
T Consensus 77 ~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 77 VILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999997432222 12 2333332 4699999999998
No 267
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.49 E-value=1.7e-13 Score=124.54 Aligned_cols=106 Identities=22% Similarity=0.317 Sum_probs=79.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcccc---------chhhccc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF---------GAMRARG 562 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f---------~~~r~r~ 562 (732)
+|+|+|.+|+|||||+|+|++.+. ..+..+++|++.....+.+ ....+.|+||||...- .......
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~----~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~ 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY----NNKKFILVDTPGINDGESQDNDGKEIRKFLEQ 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE----TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee----ceeeEEEEeCCCCcccchhhHHHHHHHHHHHH
Confidence 589999999999999999998643 4677788888874333333 3346789999994321 1122334
Q ss_pred ccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeC
Q 004746 563 ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINK 603 (732)
Q Consensus 563 ~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNK 603 (732)
+..+|++|+|+|+++.......++++.++ .+.|+++|+||
T Consensus 77 ~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 48899999999988755556677777776 78999999998
No 268
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.41 E-value=1.7e-12 Score=137.95 Aligned_cols=153 Identities=24% Similarity=0.249 Sum_probs=105.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcc-------ccchhhcccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE-------AFGAMRARGA 563 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE-------~f~~~r~r~~ 563 (732)
...|.+||-||+||||||++|...+..+.+++.||.....-.+.+ ++ ...+++-|.||.- -.+....+.+
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~y--dd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHi 272 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNY--DD-FSQITVADIPGIIEGAHMNKGLGYKFLRHI 272 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeec--cc-cceeEeccCccccccccccCcccHHHHHHH
Confidence 346899999999999999999999988889999998776665543 22 2249999999932 1233344556
Q ss_pred cccCeEEEEEEecCCC--Chhh-HH-HHHHHH-----hcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCE
Q 004746 564 RVTDIAVIVVAADDGI--RPQT-NE-AIAHAK-----AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPM 634 (732)
Q Consensus 564 ~~ADiVILVVDasdgi--~~qt-~E-iL~~ak-----~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipi 634 (732)
..|++.+||+|++... .++. ++ ++..+. ....|.+||+||+|++++... ...++...- .+..+
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~-~l~~L~~~l-------q~~~V 344 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKN-LLSSLAKRL-------QNPHV 344 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHH-HHHHHHHHc-------CCCcE
Confidence 8899999999999751 2221 11 111121 236789999999999643222 223333211 12359
Q ss_pred EEEecCCCCCHHHHHHHHHH
Q 004746 635 VQISALKGEKVDDLLETIML 654 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~ 654 (732)
|++||++++|+.+|++.|..
T Consensus 345 ~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 345 VPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred EEeeeccccchHHHHHHHhh
Confidence 99999999999999987753
No 269
>COG2262 HflX GTPases [General function prediction only]
Probab=99.41 E-value=1.7e-12 Score=142.01 Aligned_cols=155 Identities=26% Similarity=0.328 Sum_probs=109.6
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc---------cccchh
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH---------EAFGAM 558 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh---------E~f~~~ 558 (732)
...-+.|+++|-.|+|||||+|+|.+....+.+.-..|.+.....+.+. + +..+.|-||-|. +.|...
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~--~-g~~vlLtDTVGFI~~LP~~LV~AFksT 265 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELG--D-GRKVLLTDTVGFIRDLPHPLVEAFKST 265 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeC--C-CceEEEecCccCcccCChHHHHHHHHH
Confidence 3456789999999999999999999887777777777877766666653 2 457999999992 333322
Q ss_pred hcccccccCeEEEEEEecCCCChhh----HHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCE
Q 004746 559 RARGARVTDIAVIVVAADDGIRPQT----NEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPM 634 (732)
Q Consensus 559 r~r~~~~ADiVILVVDasdgi~~qt----~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipi 634 (732)
......+|++|+|+|++++...+. .+.+..+....+|+|+|.||+|+..... ....+... ....
T Consensus 266 -LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~~~~~~~~---------~~~~ 333 (411)
T COG2262 266 -LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--ILAELERG---------SPNP 333 (411)
T ss_pred -HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--hhhhhhhc---------CCCe
Confidence 234578999999999998632222 2233333335689999999999753222 11222111 0148
Q ss_pred EEEecCCCCCHHHHHHHHHHHHh
Q 004746 635 VQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~lae 657 (732)
+.+||++|+|++.|++.|.....
T Consensus 334 v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 334 VFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred EEEEeccCcCHHHHHHHHHHHhh
Confidence 99999999999999999986543
No 270
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.39 E-value=3.5e-12 Score=126.85 Aligned_cols=152 Identities=17% Similarity=0.197 Sum_probs=101.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccc--cCCceeeeeeEEEEeecCCcceeEEEEeCCCccccc-------hhhc--
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAE--AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG-------AMRA-- 560 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse--~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~-------~~r~-- 560 (732)
.+|+++|.+|+|||||+|.|++....... ..+.|++...+...+ .+..++|+||||..+.. ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~----~~~~i~viDTPG~~d~~~~~~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW----DGRRVNVIDTPGLFDTSVSPEQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE----CCeEEEEEECcCCCCccCChHHHHHHHHHH
Confidence 47999999999999999999987654332 456777766555443 34589999999954331 1111
Q ss_pred --ccccccCeEEEEEEecCCCChhhHHHHHHHHhc-C----CCEEEEEeCCCCCCC-ChHH--------HHHHHHHcCCC
Q 004746 561 --RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA-G----VPIVIAINKIDKDGA-NPER--------VMQELSSIGLM 624 (732)
Q Consensus 561 --r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~-~----vPIIVViNKiDL~~a-~~er--------v~~eL~elgl~ 624 (732)
......|++|||+++.+ +...+.+.++.++.. + .++|+++|++|.... ..++ +...+...+
T Consensus 77 ~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~-- 153 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG-- 153 (196)
T ss_pred HHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC--
Confidence 22367899999999987 777777777776542 2 578999999996432 2121 111122211
Q ss_pred CCCCCCCCCEEEE-----ecCCCCCHHHHHHHHHHHHh
Q 004746 625 PEDWGGDIPMVQI-----SALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 625 ~e~~gg~ipiVeV-----SAKtGeGIdeLfe~Ii~lae 657 (732)
+ .++.+ |+..+.++++|++.|..+..
T Consensus 154 -----~--r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~ 184 (196)
T cd01852 154 -----G--RYVAFNNKAKGEEQEQQVKELLAKVESMVK 184 (196)
T ss_pred -----C--eEEEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence 1 23333 35678899999999987654
No 271
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2e-12 Score=123.71 Aligned_cols=157 Identities=19% Similarity=0.185 Sum_probs=113.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+..+|+++|-.++||||++..|.-.....+ . .|.++++..+.+ +++.+++||..|++.+...|.+|+..+.+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~-i--pTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqg 87 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-I--PTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQG 87 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCccc-c--cccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCce
Confidence 3467899999999999999999986543321 1 255555555443 56789999999999999999999999999
Q ss_pred EEEEEEecCCCC--h---hhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIR--P---QTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~--~---qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|||+|+.+.-. + +...++.+-.....+++|..||.|++++- +.++...++-..+.-.. .-+.++||.+|
T Consensus 88 lIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~----W~vqp~~a~~g 163 (180)
T KOG0071|consen 88 LIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRN----WYVQPSCALSG 163 (180)
T ss_pred EEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCc----cEeeccccccc
Confidence 999999886421 1 11222333344578999999999998864 44444443322222233 35889999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.|+.+-|.||....
T Consensus 164 dgL~eglswlsnn~ 177 (180)
T KOG0071|consen 164 DGLKEGLSWLSNNL 177 (180)
T ss_pred hhHHHHHHHHHhhc
Confidence 99999999988643
No 272
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=6.3e-13 Score=130.96 Aligned_cols=162 Identities=23% Similarity=0.273 Sum_probs=114.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc---ccc--ccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV---AAA--EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGA 563 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~---~vs--e~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~ 563 (732)
...+.|+|+|.-|+|||||+.++-.... ..- ..-.+|.+.+..++.+. ...+.|||..|++....+|..||
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~----~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC----NAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec----cceeEEEEcCChHHHHHHHHHHH
Confidence 3456799999999999999998753221 111 11123455555555542 45799999999999999999999
Q ss_pred cccCeEEEEEEecCCCCh-----hhHHHHHHHHhcCCCEEEEEeCCCCCCCChH-HHHHHHHHcCCCCCCCCCCCCEEEE
Q 004746 564 RVTDIAVIVVAADDGIRP-----QTNEAIAHAKAAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQI 637 (732)
Q Consensus 564 ~~ADiVILVVDasdgi~~-----qt~EiL~~ak~~~vPIIVViNKiDL~~a~~e-rv~~eL~elgl~~e~~gg~ipiVeV 637 (732)
..++++|+|||+++.... +....+.+-...++|+++.+||.|+.++-.. ++...+...... -..+.++.+|
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~---~~rd~~~~pv 167 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELI---PRRDNPFQPV 167 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhc---CCccCccccc
Confidence 999999999999983222 2233444445569999999999999764322 222222211111 2246899999
Q ss_pred ecCCCCCHHHHHHHHHHHHh
Q 004746 638 SALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 638 SAKtGeGIdeLfe~Ii~lae 657 (732)
||.+|+||++-.+|+....+
T Consensus 168 Sal~gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLE 187 (197)
T ss_pred hhhhcccHHHHHHHHHHHHh
Confidence 99999999999999987544
No 273
>PRK09866 hypothetical protein; Provisional
Probab=99.38 E-value=3.4e-12 Score=146.51 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=81.0
Q ss_pred eeEEEEeCCCccc-----cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcC--CCEEEEEeCCCCCCCC---h
Q 004746 542 QPCVFLDTPGHEA-----FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAG--VPIVIAINKIDKDGAN---P 611 (732)
Q Consensus 542 i~ItLIDTPGhE~-----f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~--vPIIVViNKiDL~~a~---~ 611 (732)
..+.|+||||... +..++...+..+|+||||+|+.......+.++++.++..+ .|+|+|+||+|+.+.. .
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddk 309 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDA 309 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchH
Confidence 4689999999422 3444556789999999999999888888888888888777 4999999999985321 3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 612 erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
+.+...+... +... ......+|+|||++|.|+++|++.|...
T Consensus 310 E~Lle~V~~~-L~q~-~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 310 DQVRALISGT-LMKG-CITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred HHHHHHHHHH-HHhc-CCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 3444433221 0000 0012469999999999999999999864
No 274
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.35 E-value=9.1e-12 Score=133.00 Aligned_cols=152 Identities=27% Similarity=0.283 Sum_probs=105.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc-ccc------chhhccccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-EAF------GAMRARGAR 564 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh-E~f------~~~r~r~~~ 564 (732)
-.|+++|.|++||||||++|.+.+..+.+++.||...-..- +..++..|+|+|+||. +.. +......++
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~----l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGM----LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccce----EeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 47999999999999999999999988888999887653333 3446678999999993 211 122334458
Q ss_pred ccCeEEEEEEecCCCC------------------------------------------hhhHH----HHH----------
Q 004746 565 VTDIAVIVVAADDGIR------------------------------------------PQTNE----AIA---------- 588 (732)
Q Consensus 565 ~ADiVILVVDasdgi~------------------------------------------~qt~E----iL~---------- 588 (732)
.||++|+|+|+..... .-+.. +++
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999984211 00111 111
Q ss_pred ------------HHHh--cCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHH
Q 004746 589 ------------HAKA--AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (732)
Q Consensus 589 ------------~ak~--~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~ 654 (732)
.+.. .-+|.|+|+||+|+... +....+.+. ..++++||+++.|+++|.+.|..
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~---e~~~~l~~~----------~~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL---EELERLARK----------PNSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccCH---HHHHHHHhc----------cceEEEecccCCCHHHHHHHHHH
Confidence 1111 13589999999998652 222223221 36899999999999999999997
Q ss_pred HHhhhh
Q 004746 655 VAELQE 660 (732)
Q Consensus 655 lael~~ 660 (732)
...+-.
T Consensus 287 ~L~liR 292 (365)
T COG1163 287 VLGLIR 292 (365)
T ss_pred hhCeEE
Confidence 766543
No 275
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.35 E-value=8.1e-12 Score=134.76 Aligned_cols=84 Identities=21% Similarity=0.263 Sum_probs=62.8
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEee-------------------cCC-cceeEEEEeCCCc-
Q 004746 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVP-------------------VDG-KLQPCVFLDTPGH- 552 (732)
Q Consensus 494 VaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~-------------------idg-k~i~ItLIDTPGh- 552 (732)
|+|+|.+|+|||||+|+|++..+.+...+++|++.......+. .++ ..+.+.||||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5899999999999999999988777778888876554333321 122 3468999999996
Q ss_pred ---cccchhhcc---cccccCeEEEEEEecC
Q 004746 553 ---EAFGAMRAR---GARVTDIAVIVVAADD 577 (732)
Q Consensus 553 ---E~f~~~r~r---~~~~ADiVILVVDasd 577 (732)
+.+..+... .++.||++|+|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 444444333 4799999999999973
No 276
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.34 E-value=1.8e-11 Score=129.39 Aligned_cols=116 Identities=20% Similarity=0.245 Sum_probs=84.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcccccc--------CCceeeeeeEEEEeecCCcceeEEEEeCCCccccc-------
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEA--------GGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG------- 556 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~--------~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~------- 556 (732)
++|+++|++|+|||||+|+|++..+..... ...|..+..+...+..++..+.++||||||..++.
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~ 84 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWK 84 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHH
Confidence 589999999999999999999877653311 12344455555555556666789999999943321
Q ss_pred -------------------hhhcccc--cccCeEEEEEEecC-CCChhhHHHHHHHHhcCCCEEEEEeCCCCCC
Q 004746 557 -------------------AMRARGA--RVTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVPIVIAINKIDKDG 608 (732)
Q Consensus 557 -------------------~~r~r~~--~~ADiVILVVDasd-gi~~qt~EiL~~ak~~~vPIIVViNKiDL~~ 608 (732)
..+...+ ..+|+++++++.+. ++.+.+.+.++.+.. ++|+|+|+||+|+..
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCC
Confidence 1111223 35789999998874 777888889988875 799999999999854
No 277
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.32 E-value=2.2e-11 Score=124.84 Aligned_cols=143 Identities=20% Similarity=0.272 Sum_probs=97.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCC--ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK--VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARV 565 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k--~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ 565 (732)
...+..|+|+|++|+|||||++.|.... .......|+ +.+. ...+..++|+||||+- ......+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~------i~i~---~~~~~~i~~vDtPg~~---~~~l~~ak~ 103 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP------ITVV---TGKKRRLTFIECPNDI---NAMIDIAKV 103 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc------EEEE---ecCCceEEEEeCCchH---HHHHHHHHh
Confidence 4567789999999999999999998542 112222221 1111 1245679999999963 222344688
Q ss_pred cCeEEEEEEecCCCChhhHHHHHHHHhcCCCE-EEEEeCCCCCCCC--hHHHHHHHHH-cCCCCCCCCCCCCEEEEecCC
Q 004746 566 TDIAVIVVAADDGIRPQTNEAIAHAKAAGVPI-VIAINKIDKDGAN--PERVMQELSS-IGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 566 ADiVILVVDasdgi~~qt~EiL~~ak~~~vPI-IVViNKiDL~~a~--~erv~~eL~e-lgl~~e~~gg~ipiVeVSAKt 641 (732)
+|++++|+|++.++..++.+++..+...++|. |+|+||+|+.... .+.+...+.. +. ..+....+++++||++
T Consensus 104 aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~---~~~~~~~ki~~iSa~~ 180 (225)
T cd01882 104 ADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFW---TEVYQGAKLFYLSGIV 180 (225)
T ss_pred cCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHH---HhhCCCCcEEEEeecc
Confidence 99999999999999888888888888888994 5599999985422 2333333333 11 0111246899999999
Q ss_pred CCCH
Q 004746 642 GEKV 645 (732)
Q Consensus 642 GeGI 645 (732)
...+
T Consensus 181 ~~~~ 184 (225)
T cd01882 181 HGRY 184 (225)
T ss_pred CCCC
Confidence 8543
No 278
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=7.4e-13 Score=130.97 Aligned_cols=156 Identities=20% Similarity=0.200 Sum_probs=116.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++++|+|.-++||||+|.++++.-|...+.. |+++++..-.+.+++....+.+|||+|++.|......|++.|.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykk--tIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKK--TIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhcccccccccc--ccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 4568999999999999999999998877655544 55555444445566778889999999999999999999999999
Q ss_pred EEEEEEecCCCChh-hHHHHHHHH--hcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIRPQ-TNEAIAHAK--AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~~q-t~EiL~~ak--~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
.+|||+.+|....+ +.++.+... ...+|.++|-||||+.+. +..++......+ +..++.+|++..
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l---------~~RlyRtSvked 166 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL---------HKRLYRTSVKED 166 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHh---------hhhhhhhhhhhh
Confidence 99999998854333 334444332 247999999999999542 122222222221 246889999999
Q ss_pred CCHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLV 655 (732)
Q Consensus 643 eGIdeLfe~Ii~l 655 (732)
.|+...|..|+.-
T Consensus 167 ~NV~~vF~YLaeK 179 (246)
T KOG4252|consen 167 FNVMHVFAYLAEK 179 (246)
T ss_pred hhhHHHHHHHHHH
Confidence 9999999998753
No 279
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.8e-12 Score=140.91 Aligned_cols=120 Identities=35% Similarity=0.369 Sum_probs=99.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCC--------cc----------ccccCCceeeeeeEEEEeecCCcceeEEEEeCCC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTK--------VA----------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k--------~~----------vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG 551 (732)
+..+|.||.|.++||||...+|+.-. +. .....|+|+. +.-+.++++++++++|||||
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiq----saav~fdwkg~rinlidtpg 111 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQ----SAAVNFDWKGHRINLIDTPG 111 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceee----eeeeecccccceEeeecCCC
Confidence 34589999999999999999886311 10 1234555544 34455678889999999999
Q ss_pred ccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHH
Q 004746 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER 613 (732)
Q Consensus 552 hE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~er 613 (732)
|-+|.....+.++.-|+++.|||++.++.+|+...|+++...++|-++.+||||+..++.+.
T Consensus 112 hvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~ 173 (753)
T KOG0464|consen 112 HVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFEN 173 (753)
T ss_pred cceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999986655433
No 280
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=99.29 E-value=8.2e-12 Score=112.89 Aligned_cols=64 Identities=63% Similarity=1.066 Sum_probs=61.9
Q ss_pred ccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcCeeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 669 a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+.++|+|+..++++|.+++++|++|+|++||.|++|..|+|||+|++++|+.+++|.||++|+|
T Consensus 1 a~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~gkVr~l~d~~g~~v~~a~Ps~~V~I 64 (95)
T cd03702 1 AEGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTYGKVRAMFDENGKRVKEAGPSTPVEI 64 (95)
T ss_pred CeEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccccEEEEEECCCCCCCCEECCCCcEEE
Confidence 4689999999999999999999999999999999999999999999999999999999999986
No 281
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.27 E-value=7e-12 Score=120.18 Aligned_cols=156 Identities=24% Similarity=0.232 Sum_probs=114.2
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
.++.++|.++|--|+||||||..|....... -..|.+++...++ +++ .+++++||..|+......|..||.+.|
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~h---ltpT~GFn~k~v~--~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd 87 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRH---LTPTNGFNTKKVE--YDG-TFHLNVWDIGGQRGIRPYWSNYYENVD 87 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhh---ccccCCcceEEEe--ecC-cEEEEEEecCCccccchhhhhhhhccc
Confidence 4677899999999999999999998765431 1124554444444 333 478999999999999999999999999
Q ss_pred eEEEEEEecCCC-----ChhhHHHHHHHHhcCCCEEEEEeCCCCCC-CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 568 IAVIVVAADDGI-----RPQTNEAIAHAKAAGVPIVIAINKIDKDG-ANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 568 iVILVVDasdgi-----~~qt~EiL~~ak~~~vPIIVViNKiDL~~-a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
++|+|||.+|.- .....|++...+...+|+.+..||.|+.. +..+++...+.-.++.... ..+-+|||.+
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRs----whIq~csals 163 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRS----WHIQECSALS 163 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhce----EEeeeCcccc
Confidence 999999988742 22333444455667899999999999854 3334443333333333333 4688999999
Q ss_pred CCCHHHHHHHHH
Q 004746 642 GEKVDDLLETIM 653 (732)
Q Consensus 642 GeGIdeLfe~Ii 653 (732)
++|+.+-.+|+.
T Consensus 164 ~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 164 LEGSTDGSDWVQ 175 (185)
T ss_pred ccCccCcchhhh
Confidence 999998888875
No 282
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.27 E-value=4.2e-11 Score=128.79 Aligned_cols=157 Identities=24% Similarity=0.217 Sum_probs=108.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc-----c--ccchhhcccccc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-----E--AFGAMRARGARV 565 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh-----E--~f~~~r~r~~~~ 565 (732)
-|.++|-||+||||||+.+...+..+..++.||...+.-.+.+ .....+++-|.||. + -++....+.+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 4889999999999999999999988889999998877666665 22346999999993 1 122333455678
Q ss_pred cCeEEEEEEecCCCC---hhhH-HHHHHHH-----hcCCCEEEEEeCCCCCCC--ChHHHHHHHHHcCCCCCCCCCCCCE
Q 004746 566 TDIAVIVVAADDGIR---PQTN-EAIAHAK-----AAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPM 634 (732)
Q Consensus 566 ADiVILVVDasdgi~---~qt~-EiL~~ak-----~~~vPIIVViNKiDL~~a--~~erv~~eL~elgl~~e~~gg~ipi 634 (732)
|-++++|||++..-. .++. .+...+. ..+.|.|||+||||+... ..+.....+..... | ..+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~----~---~~~ 310 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALG----W---EVF 310 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcC----C---Ccc
Confidence 999999999985321 1222 2222232 247899999999996432 22333344433211 1 122
Q ss_pred EEEecCCCCCHHHHHHHHHHHHhhh
Q 004746 635 VQISALKGEKVDDLLETIMLVAELQ 659 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~lael~ 659 (732)
++|||.+++|+++|+..+..+....
T Consensus 311 ~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 311 YLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred eeeehhcccCHHHHHHHHHHHHHHh
Confidence 3399999999999999988765443
No 283
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=99.27 E-value=1.3e-11 Score=111.50 Aligned_cols=64 Identities=59% Similarity=1.007 Sum_probs=61.7
Q ss_pred ccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcCeeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 669 a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+.+.|+|+..++++|++++++|++|+|++||.|++|..||+||+|++++|+.+.+|.||++|+|
T Consensus 1 a~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~GkVr~~~d~~g~~v~~a~Ps~~v~i 64 (95)
T cd03701 1 AEGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTYGKIRTMVDENGKALLEAGPSTPVEI 64 (95)
T ss_pred CeEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCccceEEEEECCCCCCccccCCCCCEEE
Confidence 4689999999999999999999999999999999999999999999999999999999999975
No 284
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.3e-11 Score=140.04 Aligned_cols=122 Identities=30% Similarity=0.449 Sum_probs=98.9
Q ss_pred hcccCCCCEEEEEeCCCCCHHHHHHHHHcCCccc-----------------cccCCceeeeeeEEEEe-ecCCcceeEEE
Q 004746 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA-----------------AEAGGITQGIGAYKVQV-PVDGKLQPCVF 546 (732)
Q Consensus 485 ~~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~v-----------------se~~GtTrdI~~y~v~i-~idgk~i~ItL 546 (732)
.....+..+|+++||-.||||+|++.|....... ...+|+++.....++-. ...++.+.++|
T Consensus 122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 3344556789999999999999999997433211 12345555444333222 34678889999
Q ss_pred EeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCC
Q 004746 547 LDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDK 606 (732)
Q Consensus 547 IDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL 606 (732)
+|||||-.|...+...++.+|+++||||+.++++.++..+++|+-..+.|+++|+||+|.
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHH
Confidence 999999999999999999999999999999999999999999999999999999999995
No 285
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.26 E-value=1.6e-11 Score=128.97 Aligned_cols=166 Identities=16% Similarity=0.239 Sum_probs=109.5
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc-------cchhhc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRA 560 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~-------f~~~r~ 560 (732)
...+.+|.|+|..|+|||||||+|+.........-+.+.++..+.... +++ ..++||||||.++ +.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~-~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLS-YDG--ENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhh-ccc--cceEEecCCCcccchhhhHHHHHHHH
Confidence 456778889999999999999999976554332223333333333222 233 4699999999655 445556
Q ss_pred ccccccCeEEEEEEecCCCChhhHHHHHHHHh--cCCCEEEEEeCCCCCCC----C------hHHHHHHHHHc-CCCCCC
Q 004746 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKA--AGVPIVIAINKIDKDGA----N------PERVMQELSSI-GLMPED 627 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~--~~vPIIVViNKiDL~~a----~------~erv~~eL~el-gl~~e~ 627 (732)
.++...|++++++++.+.....+.+.++++.. .+.++|+++|.+|.... + ...+.+.+... ......
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred HHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 67789999999999999776666777766543 35789999999997321 1 11222222110 000000
Q ss_pred CCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 628 WGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 628 ~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
+..--|++.+|+..+.|+++|..+|+...
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence 11124889999999999999999998643
No 286
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.21 E-value=1.3e-10 Score=128.99 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=62.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEee-------------------cC-CcceeEEEEeCCC
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVP-------------------VD-GKLQPCVFLDTPG 551 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~-------------------id-gk~i~ItLIDTPG 551 (732)
++|+|+|.+|+|||||+|+|.+..+.....+++|++.....+.+. .+ .....++||||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999888877777888876654433321 11 1235789999999
Q ss_pred c----cccchhhccc---ccccCeEEEEEEec
Q 004746 552 H----EAFGAMRARG---ARVTDIAVIVVAAD 576 (732)
Q Consensus 552 h----E~f~~~r~r~---~~~ADiVILVVDas 576 (732)
. ..+..+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2222233333 68999999999996
No 287
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=4.2e-11 Score=119.66 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=113.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++++++|+.+.||||++.+.+...+.-.+.+ |.++..+.....-+.+.+.+..|||+|+|.|+..+..++-.+.++|
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~a--t~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPA--TLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccC--cceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 56899999999999999999998888765554 5556555555444444689999999999999999999999999999
Q ss_pred EEEEecCCCC-----hhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 571 IVVAADDGIR-----PQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 571 LVVDasdgi~-----~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
++||+...+. .+..+..+.+ .++||++++||.|...... .. ....+. -..++.++++||+++.|.
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~---k~--k~v~~~---rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKV---KA--KPVSFH---RKKNLQYYEISAKSNYNF 157 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccc---cc--ccceee---ecccceeEEeeccccccc
Confidence 9999996443 3333333333 3699999999999754220 00 001111 123678999999999999
Q ss_pred HHHHHHHHH
Q 004746 646 DDLLETIML 654 (732)
Q Consensus 646 deLfe~Ii~ 654 (732)
+.-|-|+++
T Consensus 158 ekPFl~Lar 166 (216)
T KOG0096|consen 158 ERPFLWLAR 166 (216)
T ss_pred ccchHHHhh
Confidence 999999875
No 288
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=8.5e-11 Score=135.54 Aligned_cols=118 Identities=27% Similarity=0.414 Sum_probs=94.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccc------------cccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAA------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~v------------se~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~ 556 (732)
....+|+++-|++||||||.+.|+..+... ......|++|+...-.+.+-.+++.++|||+|||-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 345689999999999999999997443221 11222344444333333334467899999999999999
Q ss_pred hhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCC
Q 004746 557 AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDK 606 (732)
Q Consensus 557 ~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL 606 (732)
........-+|++++++|+.+|+..|+...++++-..+...|+|+||||.
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 99999999999999999999999999999999888888999999999994
No 289
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.20 E-value=5.1e-11 Score=119.24 Aligned_cols=115 Identities=21% Similarity=0.295 Sum_probs=68.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeec-CCcceeEEEEeCCCccccchhhccc---ccc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAFGAMRARG---ARV 565 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~i-dgk~i~ItLIDTPGhE~f~~~r~r~---~~~ 565 (732)
+.+.|+|+|+.|+|||+|+.+|.......+.. .+ .-...+.+ ......+.++|+|||+++....... ...
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~t-----S~-e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~ 75 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVT-----SM-ENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSN 75 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B--------S-SEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGG
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeec-----cc-cCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhh
Confidence 35689999999999999999999875432211 11 11122212 2345579999999999987655444 688
Q ss_pred cCeEEEEEEecCCCChhhHHHHHHH-------H--hcCCCEEEEEeCCCCCCCCh
Q 004746 566 TDIAVIVVAADDGIRPQTNEAIAHA-------K--AAGVPIVIAINKIDKDGANP 611 (732)
Q Consensus 566 ADiVILVVDasdgi~~qt~EiL~~a-------k--~~~vPIIVViNKiDL~~a~~ 611 (732)
+-+||||+|++. ...+..+..+++ . ...+|++|++||.|+..+.+
T Consensus 76 ~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 76 AKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred CCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 999999999874 222222222222 1 24678999999999976543
No 290
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.16 E-value=4.3e-11 Score=125.40 Aligned_cols=172 Identities=23% Similarity=0.376 Sum_probs=107.6
Q ss_pred hcccCCCCEEEEEeCCCCCHHHHHHHHHcC---Ccc----c--------------------------------cccCCce
Q 004746 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKT---KVA----A--------------------------------AEAGGIT 525 (732)
Q Consensus 485 ~~l~~r~~kVaIVG~~nvGKSSLLnrLl~~---k~~----v--------------------------------se~~GtT 525 (732)
+....+++.|+++|..|+||||++.+|... +.. + +..+||+
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 456778899999999999999999998521 111 0 1122333
Q ss_pred eeeeeEEEEee-------cCCcceeEEEEeCCCc-cccchhh-----cccc--cccCeEEEEEEecCCCChhh-----HH
Q 004746 526 QGIGAYKVQVP-------VDGKLQPCVFLDTPGH-EAFGAMR-----ARGA--RVTDIAVIVVAADDGIRPQT-----NE 585 (732)
Q Consensus 526 rdI~~y~v~i~-------idgk~i~ItLIDTPGh-E~f~~~r-----~r~~--~~ADiVILVVDasdgi~~qt-----~E 585 (732)
..++.+...+. -....+.+.||||||+ |.|.-.. ...+ ...-++++|+|......+.+ ..
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 22222211110 0123366899999996 4443211 1111 33467888999876544443 33
Q ss_pred HHHHHHhcCCCEEEEEeCCCCCCCC--------hHHHHHHHHH------------cCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 586 AIAHAKAAGVPIVIAINKIDKDGAN--------PERVMQELSS------------IGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 586 iL~~ak~~~vPIIVViNKiDL~~a~--------~erv~~eL~e------------lgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
....+....+|+|+|.||+|+.+.. .+.+.+.+.+ +.+.+++|...+..+-||+.+|.|.
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 4445566789999999999997632 2333333332 1233445667789999999999999
Q ss_pred HHHHHHHHHHH
Q 004746 646 DDLLETIMLVA 656 (732)
Q Consensus 646 deLfe~Ii~la 656 (732)
+++|.++....
T Consensus 253 ddf~~av~~~v 263 (366)
T KOG1532|consen 253 DDFFTAVDESV 263 (366)
T ss_pred HHHHHHHHHHH
Confidence 99999987543
No 291
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=7.7e-11 Score=113.44 Aligned_cols=156 Identities=23% Similarity=0.191 Sum_probs=108.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+..+|.++|--|+||||++.++.-.++..+ .| |++++..++. .++.++.+||..|+-.....|..|+.++|.+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt-kP--tigfnve~v~----yKNLk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT-KP--TIGFNVETVP----YKNLKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc-CC--CCCcCccccc----cccccceeeEccCcccccHHHHHHhcccceE
Confidence 456899999999999999988875554322 22 4444444433 3677899999999999999999999999999
Q ss_pred EEEEEecCCC--ChhhHHHHHHHH---hcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 570 VIVVAADDGI--RPQTNEAIAHAK---AAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 570 ILVVDasdgi--~~qt~EiL~~ak---~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
|+|+|.++.. ...-.++...+. ..+..+++++||.|...+-. .++...+.-..+.. ..+.+|..||.+|+
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~----r~~~Iv~tSA~kg~ 165 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKD----RIWQIVKTSAVKGE 165 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhh----heeEEEeecccccc
Confidence 9999999732 222233333332 23456899999999866432 22222211111111 12579999999999
Q ss_pred CHHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLVA 656 (732)
Q Consensus 644 GIdeLfe~Ii~la 656 (732)
|++..++||.+..
T Consensus 166 Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 166 GLDPAMDWLQRPL 178 (182)
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998643
No 292
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=3.3e-10 Score=115.27 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=100.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccc---cc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGAR---VT 566 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~---~A 566 (732)
.+..|.++|..|+|||+|+-.|+...+.. +-..+......+.++.. .++++|.|||.+...-...++. .+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~-----TvtSiepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~a 109 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRG-----TVTSIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSA 109 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccC-----eeeeeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccc
Confidence 34679999999999999999999764321 11112111222222222 4899999999988766666664 78
Q ss_pred CeEEEEEEecCCCC--hhhHHHH----HHH--HhcCCCEEEEEeCCCCCCCChHHHHHH-HHHc----------------
Q 004746 567 DIAVIVVAADDGIR--PQTNEAI----AHA--KAAGVPIVIAINKIDKDGANPERVMQE-LSSI---------------- 621 (732)
Q Consensus 567 DiVILVVDasdgi~--~qt~EiL----~~a--k~~~vPIIVViNKiDL~~a~~erv~~e-L~el---------------- 621 (732)
-+++||+|+..-.. ...-|++ ... ....+|++++.||.|+..+...+.+++ ++..
T Consensus 110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ 189 (238)
T KOG0090|consen 110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISD 189 (238)
T ss_pred eeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 99999999874211 1111222 222 234678999999999977655444332 2210
Q ss_pred --------------CCCCCCCC-CCCCEEEEecCCCCCHHHHHHHHHH
Q 004746 622 --------------GLMPEDWG-GDIPMVQISALKGEKVDDLLETIML 654 (732)
Q Consensus 622 --------------gl~~e~~g-g~ipiVeVSAKtGeGIdeLfe~Ii~ 654 (732)
.|.+.+.. ..+.|.+.|+++| +|+++.+||..
T Consensus 190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~ 236 (238)
T KOG0090|consen 190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIRE 236 (238)
T ss_pred ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHH
Confidence 01111112 4577999999999 99999999875
No 293
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.10 E-value=1.9e-10 Score=108.52 Aligned_cols=138 Identities=22% Similarity=0.278 Sum_probs=99.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCC----ccccchhhcccccccC
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----HEAFGAMRARGARVTD 567 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG----hE~f~~~r~r~~~~AD 567 (732)
.+|++||..++|||||++.|.+...- ..-||.+ ++ +.+ -.||||| |..+..........+|
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l----ykKTQAv-----e~--~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dad 66 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL----YKKTQAV-----EF--NDK----GDIDTPGEYFEHPRWYHALITTLQDAD 66 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh----hccccee-----ec--cCc----cccCCchhhhhhhHHHHHHHHHhhccc
Confidence 37999999999999999999876543 2235543 22 111 2589999 3333222333457899
Q ss_pred eEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCC-CCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHH
Q 004746 568 IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD-GANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (732)
Q Consensus 568 iVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~-~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGId 646 (732)
++++|-.++++...---- ++.-...|+|-+++|+||. +++.....++|.+.|. -++|.+|+.+..|++
T Consensus 67 vi~~v~~and~~s~f~p~---f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa--------~~IF~~s~~d~~gv~ 135 (148)
T COG4917 67 VIIYVHAANDPESRFPPG---FLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGA--------EPIFETSAVDNQGVE 135 (148)
T ss_pred eeeeeecccCccccCCcc---cccccccceEEEEecccccchHhHHHHHHHHHHcCC--------cceEEEeccCcccHH
Confidence 999999999864332211 1222346799999999998 6778888888888762 479999999999999
Q ss_pred HHHHHHHHH
Q 004746 647 DLLETIMLV 655 (732)
Q Consensus 647 eLfe~Ii~l 655 (732)
+|++.|...
T Consensus 136 ~l~~~L~~~ 144 (148)
T COG4917 136 ELVDYLASL 144 (148)
T ss_pred HHHHHHHhh
Confidence 999988643
No 294
>PRK13768 GTPase; Provisional
Probab=99.05 E-value=1e-09 Score=114.60 Aligned_cols=113 Identities=26% Similarity=0.341 Sum_probs=73.9
Q ss_pred eEEEEeCCCccccchhhc------ccccc--cCeEEEEEEecCCCChhhHHHHHHHH-----hcCCCEEEEEeCCCCCCC
Q 004746 543 PCVFLDTPGHEAFGAMRA------RGARV--TDIAVIVVAADDGIRPQTNEAIAHAK-----AAGVPIVIAINKIDKDGA 609 (732)
Q Consensus 543 ~ItLIDTPGhE~f~~~r~------r~~~~--ADiVILVVDasdgi~~qt~EiL~~ak-----~~~vPIIVViNKiDL~~a 609 (732)
.+.||||||+.++...+. +.+.. ++++++|+|+.....+.+.+...++. ..++|+|+|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 689999999755432211 22222 89999999998877776655544432 468999999999998653
Q ss_pred C-hHHHHHHHHH-------cCC--------------CCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 610 N-PERVMQELSS-------IGL--------------MPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 610 ~-~erv~~eL~e-------lgl--------------~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
. .+.....+.. +.. .....+...+++++||++++|+++|+++|...
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~ 245 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEV 245 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 2 2222222221 000 00112234689999999999999999999754
No 295
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.05 E-value=4.1e-10 Score=118.44 Aligned_cols=159 Identities=24% Similarity=0.323 Sum_probs=115.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCcc---ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc----------cc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVA---AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EA 554 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~---vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh----------E~ 554 (732)
..+.+.++++|..|+|||||||.|+..+.. .....|-|+.+++|++.- .+.++|.||. ++
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~-------~~~~vDlPG~~~a~y~~~~~~d 205 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK-------SWYEVDLPGYGRAGYGFELPAD 205 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc-------eEEEEecCCcccccCCccCcch
Confidence 466789999999999999999999866543 233678899988887542 6899999991 34
Q ss_pred cchhhcccc---cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCCh-------HHHHHHHHHcCCC
Q 004746 555 FGAMRARGA---RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-------ERVMQELSSIGLM 624 (732)
Q Consensus 555 f~~~r~r~~---~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~-------erv~~eL~elgl~ 624 (732)
+..+...|+ .+--.+++++|++-++.+-+...++++...++|+.+|+||||+...-. ..+...+. ++.
T Consensus 206 ~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~--~l~ 283 (320)
T KOG2486|consen 206 WDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQ--GLI 283 (320)
T ss_pred HhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehh--hcc
Confidence 444554444 234467888999999999999999999999999999999999742110 01111011 122
Q ss_pred CCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 625 PEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 625 ~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
...+....|++.+|+.++.|+++|+-.|...
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhhh
Confidence 2223345788999999999999998766543
No 296
>PTZ00258 GTP-binding protein; Provisional
Probab=99.05 E-value=1.2e-09 Score=121.03 Aligned_cols=87 Identities=24% Similarity=0.195 Sum_probs=65.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCc--------------ceeEEEEeCCCccc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK--------------LQPCVFLDTPGHEA 554 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk--------------~i~ItLIDTPGhE~ 554 (732)
.+..+|+|+|.||+|||||+|+|.+.+..+...+++|++.....+.+. +.. ...+.|+||||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~-d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVP-DERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecc-cchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 556799999999999999999999888888888999988766555442 111 23589999999321
Q ss_pred -------cchhhcccccccCeEEEEEEec
Q 004746 555 -------FGAMRARGARVTDIAVIVVAAD 576 (732)
Q Consensus 555 -------f~~~r~r~~~~ADiVILVVDas 576 (732)
++......++.+|++|+|+|+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1212223458899999999984
No 297
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.02 E-value=3.8e-10 Score=127.67 Aligned_cols=151 Identities=19% Similarity=0.185 Sum_probs=104.2
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCcccc---ccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAA---EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGAR 564 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vs---e~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~ 564 (732)
..+..+|+++|+.|+|||||+-+|+...+... ..+.+++- ..+.-..+...++||...++-.......++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP-------advtPe~vpt~ivD~ss~~~~~~~l~~Eir 78 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP-------ADVTPENVPTSIVDTSSDSDDRLCLRKEIR 78 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC-------CccCcCcCceEEEecccccchhHHHHHHHh
Confidence 45678999999999999999999998877532 22233322 222334567999999876665555567789
Q ss_pred ccCeEEEEEEecC-----CCChhhHHHHHHHH--hcCCCEEEEEeCCCCCCCChH----HHHHHHHHcCCCCCCCCCCCC
Q 004746 565 VTDIAVIVVAADD-----GIRPQTNEAIAHAK--AAGVPIVIAINKIDKDGANPE----RVMQELSSIGLMPEDWGGDIP 633 (732)
Q Consensus 565 ~ADiVILVVDasd-----gi~~qt~EiL~~ak--~~~vPIIVViNKiDL~~a~~e----rv~~eL~elgl~~e~~gg~ip 633 (732)
.||++++||+.++ +++..|+-++++.. ..++|+|+|+||+|....... .+...+.++.- --.
T Consensus 79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E-------iEt 151 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE-------IET 151 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH-------HHH
Confidence 9999999999886 34445555555443 247899999999998543222 12222222110 125
Q ss_pred EEEEecCCCCCHHHHHHHH
Q 004746 634 MVQISALKGEKVDDLLETI 652 (732)
Q Consensus 634 iVeVSAKtGeGIdeLfe~I 652 (732)
+|+|||++-.++.++|..-
T Consensus 152 ciecSA~~~~n~~e~fYya 170 (625)
T KOG1707|consen 152 CIECSALTLANVSELFYYA 170 (625)
T ss_pred HHhhhhhhhhhhHhhhhhh
Confidence 8999999999999998764
No 298
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.8e-09 Score=120.15 Aligned_cols=119 Identities=30% Similarity=0.429 Sum_probs=96.6
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCC------------cc----ccccCCceeeeeeEEEEee------------cCC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK------------VA----AAEAGGITQGIGAYKVQVP------------VDG 539 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k------------~~----vse~~GtTrdI~~y~v~i~------------idg 539 (732)
..+..++.+|.|++||||||.+.|.... +. .....++|+...+.++.+. -++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 3445679999999999999999996321 11 1234577766555444332 245
Q ss_pred cceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCC
Q 004746 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDK 606 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL 606 (732)
.++.|++||.|||-+|.......++.+|++++|+|.-+++.-|+.-.+.++-...+.-++++||+|.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDR 162 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhH
Confidence 6789999999999999999999999999999999999999999999999998888888999999994
No 299
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.99 E-value=1e-09 Score=122.47 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=106.7
Q ss_pred hhcccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcc-----c-cch
Q 004746 484 LDKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE-----A-FGA 557 (732)
Q Consensus 484 ~~~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE-----~-f~~ 557 (732)
+..+......++|+|-||+|||||+|.+......+.+++.||..+-..+ ++.+...++++||||.- + ...
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH----~dykYlrwQViDTPGILD~plEdrN~I 236 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH----LDYKYLRWQVIDTPGILDRPEEDRNII 236 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh----hhhheeeeeecCCccccCcchhhhhHH
Confidence 3445567789999999999999999999999999999999998874444 34455689999999931 1 111
Q ss_pred hhcc---cccccCeEEEEEEecCCCChhhHHHHHHHHh-----cCCCEEEEEeCCCCCC-CCh----HHHHHHHHHcCCC
Q 004746 558 MRAR---GARVTDIAVIVVAADDGIRPQTNEAIAHAKA-----AGVPIVIAINKIDKDG-ANP----ERVMQELSSIGLM 624 (732)
Q Consensus 558 ~r~r---~~~~ADiVILVVDasdgi~~qt~EiL~~ak~-----~~vPIIVViNKiDL~~-a~~----erv~~eL~elgl~ 624 (732)
++.. .++.--+|||++|.+..+-....+.+..+.. .+.|+|+|+||||+.. .+. ..+.+.+.+.
T Consensus 237 EmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~--- 313 (620)
T KOG1490|consen 237 EMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD--- 313 (620)
T ss_pred HHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhc---
Confidence 2211 1234467999999997433322222222221 4789999999999843 222 2333444433
Q ss_pred CCCCCCCCCEEEEecCCCCCHHHHHHH
Q 004746 625 PEDWGGDIPMVQISALKGEKVDDLLET 651 (732)
Q Consensus 625 ~e~~gg~ipiVeVSAKtGeGIdeLfe~ 651 (732)
++++++.+|..+.+|+.++...
T Consensus 314 -----~~v~v~~tS~~~eegVm~Vrt~ 335 (620)
T KOG1490|consen 314 -----GNVKVVQTSCVQEEGVMDVRTT 335 (620)
T ss_pred -----cCceEEEecccchhceeeHHHH
Confidence 2478999999999999875544
No 300
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.98 E-value=7.4e-09 Score=100.83 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=106.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcccc-ccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccc-hhhccccccc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAA-EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG-AMRARGARVT 566 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vs-e~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~-~~r~r~~~~A 566 (732)
-+..+|+++|.-++|||+||..|+..+...+ +...|--|+....++.. .+-.-.+.|.||+|...+. .+-..|++-+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~-rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETD-RGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecC-CChhheEEEeecccccCchhhhhHhHhccC
Confidence 4567999999999999999999997665533 33333334333333332 3344569999999977774 4445667999
Q ss_pred CeEEEEEEecCCCChhhHHHHHHH-----HhcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEe
Q 004746 567 DIAVIVVAADDGIRPQTNEAIAHA-----KAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (732)
Q Consensus 567 DiVILVVDasdgi~~qt~EiL~~a-----k~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVS 638 (732)
|+++|||+..+....+..+.+..- ....+||+|++||+|+.+. +.+....+... ..+..++++
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~r---------Ekvkl~eVt 156 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKR---------EKVKLWEVT 156 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhh---------hheeEEEEE
Confidence 999999999886666665555432 1235899999999998431 22222222221 136789999
Q ss_pred cCCCCCHHHHHHHHHH
Q 004746 639 ALKGEKVDDLLETIML 654 (732)
Q Consensus 639 AKtGeGIdeLfe~Ii~ 654 (732)
|.....+-+.|..+..
T Consensus 157 a~dR~sL~epf~~l~~ 172 (198)
T KOG3883|consen 157 AMDRPSLYEPFTYLAS 172 (198)
T ss_pred eccchhhhhHHHHHHH
Confidence 9999999998888764
No 301
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.98 E-value=2.1e-09 Score=103.02 Aligned_cols=111 Identities=17% Similarity=0.252 Sum_probs=71.2
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEe--------------------------------------
Q 004746 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQV-------------------------------------- 535 (732)
Q Consensus 494 VaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i-------------------------------------- 535 (732)
|+|+|..++|||||||+|++..........+|..+......-
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 799999999999999999987654332222222221111100
Q ss_pred --------------ecCCcceeEEEEeCCCccc----cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHh-cCCC
Q 004746 536 --------------PVDGKLQPCVFLDTPGHEA----FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKA-AGVP 596 (732)
Q Consensus 536 --------------~idgk~i~ItLIDTPGhE~----f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~-~~vP 596 (732)
........+.|+||||... ...+...++..+|++|+|++++........+.+..... ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSR 160 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSS
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCe
Confidence 0000124589999999532 22455677799999999999998777666666555443 3445
Q ss_pred EEEEEeCC
Q 004746 597 IVIAINKI 604 (732)
Q Consensus 597 IIVViNKi 604 (732)
+|+|+||+
T Consensus 161 ~i~V~nk~ 168 (168)
T PF00350_consen 161 TIFVLNKA 168 (168)
T ss_dssp EEEEEE-G
T ss_pred EEEEEcCC
Confidence 99999995
No 302
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.98 E-value=5e-09 Score=105.65 Aligned_cols=151 Identities=22% Similarity=0.236 Sum_probs=88.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC-C--c--c--ccccCCceeee------eeEEEEee------------------cC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT-K--V--A--AAEAGGITQGI------GAYKVQVP------------------VD 538 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~-k--~--~--vse~~GtTrdI------~~y~v~i~------------------id 538 (732)
..++|+|+|+.|+|||||+++|+.. . . . ..+. +...|. +...+.+. ..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~-~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDV-ITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCC-CCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 4678999999999999999999743 1 1 1 1110 000000 00011110 00
Q ss_pred CcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC---hHHHH
Q 004746 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN---PERVM 615 (732)
Q Consensus 539 gk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~---~erv~ 615 (732)
.....+.|++|.|.-.. ...+....+..+.|+|+.++.... ..+....+.+.++++||+|+.... .....
T Consensus 100 ~~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~----~~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~ 172 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKP----LKYPGMFKEADLIVINKADLAEAVGFDVEKMK 172 (207)
T ss_pred cCCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchh----hhhHhHHhhCCEEEEEHHHccccchhhHHHHH
Confidence 11357889999882110 111123456667888887643322 122223457889999999996532 23344
Q ss_pred HHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 616 QELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 616 ~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
..+.... ...+++++||++|.|+++++++|...
T Consensus 173 ~~l~~~~-------~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 173 ADAKKIN-------PEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHhC-------CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4444332 24689999999999999999999753
No 303
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.97 E-value=5.4e-09 Score=113.63 Aligned_cols=111 Identities=24% Similarity=0.288 Sum_probs=66.6
Q ss_pred cceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHH
Q 004746 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQEL 618 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL 618 (732)
.++.+.|+||+|.-.-... ....+|++++|++...+..-+. +.. ....+.-|+|+||+|+.... ..+...++
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~---~k~-gi~E~aDIiVVNKaDl~~~~~a~~~~~el 219 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQG---IKK-GIMELADLIVINKADGDNKTAARRAAAEY 219 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHH---HHh-hhhhhhheEEeehhcccchhHHHHHHHHH
Confidence 3578999999995422111 3577999999976332222221 111 01122348999999986532 22333333
Q ss_pred HH-cCCCC-CCCCCCCCEEEEecCCCCCHHHHHHHHHHHHh
Q 004746 619 SS-IGLMP-EDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 619 ~e-lgl~~-e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
.. +.+.. .......+++.+||++|.||++|++.|....+
T Consensus 220 ~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 220 RSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 32 22211 11112468999999999999999999987544
No 304
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.97 E-value=8.5e-10 Score=121.31 Aligned_cols=157 Identities=18% Similarity=0.284 Sum_probs=86.9
Q ss_pred hcccCCCCEEEEEeCCCCCHHHHHHHHHcCC-----ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc--cc-
Q 004746 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKTK-----VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--FG- 556 (732)
Q Consensus 485 ~~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k-----~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~--f~- 556 (732)
..+..-+.+|+|+|.+|+|||||||+|++-. .+.+-.-.+|.....|.. -+.-.++|||.||... |.
T Consensus 29 ~~~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-----p~~pnv~lWDlPG~gt~~f~~ 103 (376)
T PF05049_consen 29 KDIDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-----PKFPNVTLWDLPGIGTPNFPP 103 (376)
T ss_dssp HHHHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE------SS-TTEEEEEE--GGGSS--H
T ss_pred HHhhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-----CCCCCCeEEeCCCCCCCCCCH
Confidence 3345567899999999999999999998522 111111134555444432 1223699999999422 21
Q ss_pred --hhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCC----------CCChHHHHHH-------
Q 004746 557 --AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD----------GANPERVMQE------- 617 (732)
Q Consensus 557 --~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~----------~a~~erv~~e------- 617 (732)
.+....+...|++|++.+ ......+..++..++..++|+++|-+|+|.. ..+.+++.+.
T Consensus 104 ~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 104 EEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp HHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred HHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 111234577898887764 4567777888888999999999999999951 1222333222
Q ss_pred -HHHcCCCCCCCCCCCCEEEEecCCC--CCHHHHHHHHHH
Q 004746 618 -LSSIGLMPEDWGGDIPMVQISALKG--EKVDDLLETIML 654 (732)
Q Consensus 618 -L~elgl~~e~~gg~ipiVeVSAKtG--eGIdeLfe~Ii~ 654 (732)
|...+. ...++|.||...- ..+..|.+.|..
T Consensus 182 ~L~k~gv------~~P~VFLVS~~dl~~yDFp~L~~tL~~ 215 (376)
T PF05049_consen 182 NLQKAGV------SEPQVFLVSSFDLSKYDFPKLEETLEK 215 (376)
T ss_dssp HHHCTT-------SS--EEEB-TTTTTSTTHHHHHHHHHH
T ss_pred HHHHcCC------CcCceEEEeCCCcccCChHHHHHHHHH
Confidence 222232 2457999998764 457778877764
No 305
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.97 E-value=5.7e-09 Score=109.23 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=79.1
Q ss_pred cccCCCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch--h----
Q 004746 486 KLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA--M---- 558 (732)
Q Consensus 486 ~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~--~---- 558 (732)
......++|+++|.+|+|||||+|+|++.... ++...+.|.....+... . .+..++||||||...... .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~--~--~g~~i~vIDTPGl~~~~~~~~~~~~ 101 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT--V--DGFKLNIIDTPGLLESVMDQRVNRK 101 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE--E--CCeEEEEEECCCcCcchhhHHHHHH
Confidence 34556789999999999999999999987653 44455566665544433 2 346799999999654310 0
Q ss_pred ----hcccc--cccCeEEEEEEecC-CCChhhHHHHHHHHh-cC----CCEEEEEeCCCCC
Q 004746 559 ----RARGA--RVTDIAVIVVAADD-GIRPQTNEAIAHAKA-AG----VPIVIAINKIDKD 607 (732)
Q Consensus 559 ----r~r~~--~~ADiVILVVDasd-gi~~qt~EiL~~ak~-~~----vPIIVViNKiDL~ 607 (732)
..+++ ...|++++|..++. .....+..+++.+.. ++ .++|+|+||+|..
T Consensus 102 ~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 102 ILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 11223 25788888876664 344455556655543 23 4699999999974
No 306
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.3e-09 Score=107.20 Aligned_cols=160 Identities=19% Similarity=0.140 Sum_probs=108.5
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccccc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
+..+.-+++++|--|+|||||++.|-.++.... . .|.|.+...+.+ .+..++-+|..||..-...+..++..+
T Consensus 16 L~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qh-v--PTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v 88 (193)
T KOG0077|consen 16 LYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-V--PTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQV 88 (193)
T ss_pred HhccCceEEEEeecCCchhhHHHHHcccccccc-C--CCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhh
Confidence 567778999999999999999999987765432 1 144443333332 457899999999998888888999999
Q ss_pred CeEEEEEEecCCCChh-hHHHHHHH----HhcCCCEEEEEeCCCCCCCChHHHHHHHHH-------cCCC--CCCCCCCC
Q 004746 567 DIAVIVVAADDGIRPQ-TNEAIAHA----KAAGVPIVIAINKIDKDGANPERVMQELSS-------IGLM--PEDWGGDI 632 (732)
Q Consensus 567 DiVILVVDasdgi~~q-t~EiL~~a----k~~~vPIIVViNKiDL~~a~~erv~~eL~e-------lgl~--~e~~gg~i 632 (732)
|++++.||+.|....+ .++.++.+ ...++|+++.+||+|.+.+..+...+.... .+.. ...-...+
T Consensus 89 ~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ 168 (193)
T KOG0077|consen 89 DAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPL 168 (193)
T ss_pred ceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeE
Confidence 9999999999743222 22222222 235899999999999988654443332211 1111 11122345
Q ss_pred CEEEEecCCCCCHHHHHHHHH
Q 004746 633 PMVQISALKGEKVDDLLETIM 653 (732)
Q Consensus 633 piVeVSAKtGeGIdeLfe~Ii 653 (732)
.++.||...+.|.-+-|.|+.
T Consensus 169 evfmcsi~~~~gy~e~fkwl~ 189 (193)
T KOG0077|consen 169 EVFMCSIVRKMGYGEGFKWLS 189 (193)
T ss_pred EEEEEEEEccCccceeeeehh
Confidence 678888888888766666654
No 307
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.97 E-value=2.1e-10 Score=114.42 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=110.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecC-CcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-GKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~id-gk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++.|+|.-++|||+++.+++...+...+.. |+++.+......++ ..-+++.|||.+|+++|+.|..-+++.+++.+
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRA--tIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRA--TIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHH--HHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 5799999999999999999998777654443 43433322222233 23457889999999999999999999999999
Q ss_pred EEEEecCCCChhhHHHHHH-HH-------hcCCCEEEEEeCCCCCCCCh----HHHHHHHHHcCCCCCCCCCCCCEEEEe
Q 004746 571 IVVAADDGIRPQTNEAIAH-AK-------AAGVPIVIAINKIDKDGANP----ERVMQELSSIGLMPEDWGGDIPMVQIS 638 (732)
Q Consensus 571 LVVDasdgi~~qt~EiL~~-ak-------~~~vPIIVViNKiDL~~a~~----erv~~eL~elgl~~e~~gg~ipiVeVS 638 (732)
+|||.+......-...+.+ +. ..-+|+++..||||...... ..+.+...+.++ ..++++|
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf--------~gwtets 175 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF--------EGWTETS 175 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc--------cceeeec
Confidence 9999998655443322222 11 11346899999999854322 223333333443 4689999
Q ss_pred cCCCCCHHHHHHHHHHHHh
Q 004746 639 ALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 639 AKtGeGIdeLfe~Ii~lae 657 (732)
+|.+.||+|..+.|+...-
T Consensus 176 ~Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 176 AKENKNIPEAQRELVEKIL 194 (229)
T ss_pred cccccChhHHHHHHHHHHH
Confidence 9999999999888876543
No 308
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.96 E-value=6.1e-09 Score=115.32 Aligned_cols=156 Identities=19% Similarity=0.340 Sum_probs=103.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC----Ccc------------ccccCC---ceeeeee---EEEEeec-CCcceeEEEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT----KVA------------AAEAGG---ITQGIGA---YKVQVPV-DGKLQPCVFL 547 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~----k~~------------vse~~G---tTrdI~~---y~v~i~i-dgk~i~ItLI 547 (732)
-+.|+|+|+.++|||||+|+|... +.. ++..+| +|.+.-+ ..+++.. ++-..++.|+
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 467999999999999999999876 332 345667 6766655 4455543 3445689999
Q ss_pred eCCCccc---cchhh--------------------------ccccc-ccCeEEEEE-Eec------CCCChhhHHHHHHH
Q 004746 548 DTPGHEA---FGAMR--------------------------ARGAR-VTDIAVIVV-AAD------DGIRPQTNEAIAHA 590 (732)
Q Consensus 548 DTPGhE~---f~~~r--------------------------~r~~~-~ADiVILVV-Das------dgi~~qt~EiL~~a 590 (732)
||+|... .+.++ ...+. .+|+.|+|. |.+ +.......+++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 9999322 11111 12233 799999999 876 34556677888999
Q ss_pred HhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC--CCCHHHHHHHHHH
Q 004746 591 KAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK--GEKVDDLLETIML 654 (732)
Q Consensus 591 k~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt--GeGIdeLfe~Ii~ 654 (732)
+..++|+|+++||+|-...........+.+. + +++++++|+.. -+.|..+++.++-
T Consensus 177 k~~~kPfiivlN~~dp~~~et~~l~~~l~ek------y--~vpvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 177 KELNKPFIILLNSTHPYHPETEALRQELEEK------Y--DVPVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred HhcCCCEEEEEECcCCCCchhHHHHHHHHHH------h--CCceEEEEHHHcCHHHHHHHHHHHHh
Confidence 9999999999999994222233333344321 1 25677777643 4456666666553
No 309
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.94 E-value=2e-09 Score=104.92 Aligned_cols=156 Identities=13% Similarity=0.144 Sum_probs=116.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
..+|.++|++..|||||+-.+.++.+... ...|.++++....+.+.+..+.+.+||..|+++|..+..-....+-++|
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~--~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEE--YTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHH--HHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 36899999999999999999998776532 2336677777777778888899999999999999999998889999999
Q ss_pred EEEEecCCCC-hhhHHHHHHHHhcCCC--EEEEEeCCCCCCC-Ch---HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 571 IVVAADDGIR-PQTNEAIAHAKAAGVP--IVIAINKIDKDGA-NP---ERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 571 LVVDasdgi~-~qt~EiL~~ak~~~vP--IIVViNKiDL~~a-~~---erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
|+||.+.... ....++.++++..+.. -|+|++|.|+--. .+ +.+..+...+... -+.+.|+||+-...
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~-----mnAsL~F~Sts~sI 172 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKV-----MNASLFFCSTSHSI 172 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHH-----hCCcEEEeeccccc
Confidence 9999997543 3345677777766543 4788999996321 11 1222222111111 14689999999999
Q ss_pred CHHHHHHHHH
Q 004746 644 KVDDLLETIM 653 (732)
Q Consensus 644 GIdeLfe~Ii 653 (732)
||..+|..++
T Consensus 173 Nv~KIFK~vl 182 (205)
T KOG1673|consen 173 NVQKIFKIVL 182 (205)
T ss_pred cHHHHHHHHH
Confidence 9999998765
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.93 E-value=1.1e-08 Score=109.27 Aligned_cols=109 Identities=21% Similarity=0.313 Sum_probs=65.9
Q ss_pred cceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHH-H-
Q 004746 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQ-E- 617 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~-e- 617 (732)
.++.+.|+||+|.-.-. ...+..+|.++++.+...+ ..++.+... ..++|.++|+||+|+.......... .
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~-l~~~~~ivv~NK~Dl~~~~~~~~~~~~~ 197 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAG-LMEIADIYVVNKADGEGATNVTIARLML 197 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHH-HhhhccEEEEEcccccchhHHHHHHHHH
Confidence 35789999999953211 1235678888888543321 222222211 2468889999999997543222111 1
Q ss_pred ---HHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHh
Q 004746 618 ---LSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 618 ---L~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
+..+......| ..++++|||++|+|+++|+++|.....
T Consensus 198 ~~~l~~l~~~~~~~--~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 198 ALALEEIRRREDGW--RPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHhhccccccCC--CCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 11111111123 247999999999999999999987533
No 311
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.92 E-value=9.9e-09 Score=103.79 Aligned_cols=99 Identities=19% Similarity=0.337 Sum_probs=65.0
Q ss_pred ceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCE--EEEEeCCCCCC---CChHHHH
Q 004746 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPI--VIAINKIDKDG---ANPERVM 615 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPI--IVViNKiDL~~---a~~erv~ 615 (732)
...+.|++|.|..- ..... ...+|.+|+|+|+.++...+. +. ...+.+ ++++||+|+.. ...+.+.
T Consensus 91 ~~D~iiIEt~G~~l-~~~~~--~~l~~~~i~vvD~~~~~~~~~-~~-----~~qi~~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 91 PLEMVFIESGGDNL-SATFS--PELADLTIFVIDVAAGDKIPR-KG-----GPGITRSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred CCCEEEEECCCCCc-ccccc--hhhhCcEEEEEEcchhhhhhh-hh-----HhHhhhccEEEEEhhhccccccccHHHHH
Confidence 35678999999311 11111 123688999999987544221 11 112333 89999999964 3444455
Q ss_pred HHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 616 QELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 616 ~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
+.+..++ ...+++++||++|+|+++++++|...
T Consensus 162 ~~~~~~~-------~~~~i~~~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 162 RDAKKMR-------GEKPFIFTNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred HHHHHhC-------CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5555542 24789999999999999999999854
No 312
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.91 E-value=3.2e-10 Score=117.76 Aligned_cols=114 Identities=21% Similarity=0.263 Sum_probs=60.8
Q ss_pred eEEEEeCCCccccchhhcccc--------cccCeEEEEEEecCCCChhhH-H----HHHHHHhcCCCEEEEEeCCCCCCC
Q 004746 543 PCVFLDTPGHEAFGAMRARGA--------RVTDIAVIVVAADDGIRPQTN-E----AIAHAKAAGVPIVIAINKIDKDGA 609 (732)
Q Consensus 543 ~ItLIDTPGhE~f~~~r~r~~--------~~ADiVILVVDasdgi~~qt~-E----iL~~ak~~~vPIIVViNKiDL~~a 609 (732)
.+.|+|||||.++...+.... ...=++++++|+..-..+... . .+...-..+.|+|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 799999999877765554322 345678899998864443332 1 112223368999999999999652
Q ss_pred ChHHHHHH------------------HHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 610 NPERVMQE------------------LSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 610 ~~erv~~e------------------L~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
..+..... ...+......++....++++|+.+++|+++|+..|....
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 11111111 111112223333334899999999999999999887643
No 313
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.90 E-value=1.8e-08 Score=104.57 Aligned_cols=152 Identities=19% Similarity=0.246 Sum_probs=90.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh-----hccccccc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM-----RARGARVT 566 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~-----r~r~~~~A 566 (732)
||++||..++||||+...+...... .+..-+.|.++...++.. .....+++||+||+..|... +...++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~---~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF---LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC---TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec---CCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 6999999999999999998865432 344445677766555542 34568999999998776554 34456899
Q ss_pred CeEEEEEEecCCCChhhH----HHHHHHHh--cCCCEEEEEeCCCCCCCCh---------HHHHHHHHHcCCCCCCCCCC
Q 004746 567 DIAVIVVAADDGIRPQTN----EAIAHAKA--AGVPIVIAINKIDKDGANP---------ERVMQELSSIGLMPEDWGGD 631 (732)
Q Consensus 567 DiVILVVDasdgi~~qt~----EiL~~ak~--~~vPIIVViNKiDL~~a~~---------erv~~eL~elgl~~e~~gg~ 631 (732)
+++|+|+|+...-..... ..+..+.. .++.+.|.+.|+|+...+. +++...+...+.. .
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~------~ 151 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIE------D 151 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-T------S
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcccc------c
Confidence 999999999843222222 22233322 3567999999999854221 1122223333221 3
Q ss_pred CCEEEEecCCCCCHHHHHHHHHH
Q 004746 632 IPMVQISALKGEKVDDLLETIML 654 (732)
Q Consensus 632 ipiVeVSAKtGeGIdeLfe~Ii~ 654 (732)
+.|+.+|... +.|-+.+..|+.
T Consensus 152 ~~~~~TSI~D-~Sly~A~S~Ivq 173 (232)
T PF04670_consen 152 ITFFLTSIWD-ESLYEAWSKIVQ 173 (232)
T ss_dssp EEEEEE-TTS-THHHHHHHHHHH
T ss_pred eEEEeccCcC-cHHHHHHHHHHH
Confidence 6788898888 466666666653
No 314
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.90 E-value=1.9e-08 Score=104.94 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=84.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeee---------eEEEEe-------------------------
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIG---------AYKVQV------------------------- 535 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~---------~y~v~i------------------------- 535 (732)
..|.|+++|+.++|||||+++|.+..+.....+.+|+... .|...+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999876532211222221100 000000
Q ss_pred -------------ec-CCcceeEEEEeCCCcccc-------------chhhccccc-ccCeEEEEEEecCCCChhh-HHH
Q 004746 536 -------------PV-DGKLQPCVFLDTPGHEAF-------------GAMRARGAR-VTDIAVIVVAADDGIRPQT-NEA 586 (732)
Q Consensus 536 -------------~i-dgk~i~ItLIDTPGhE~f-------------~~~r~r~~~-~ADiVILVVDasdgi~~qt-~Ei 586 (732)
.+ .-....++|+||||.... ..+...|++ ..+++|+|+|+..++..++ .++
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 00 001256999999996321 123345565 5679999999998887776 688
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHH
Q 004746 587 IAHAKAAGVPIVIAINKIDKDGANPERVMQELSS 620 (732)
Q Consensus 587 L~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~e 620 (732)
++++...+.++|+|+||+|......+ +...+..
T Consensus 185 a~~ld~~~~rti~ViTK~D~~~~~~~-~~~~~~~ 217 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMDEGTD-ARDILEN 217 (240)
T ss_pred HHHHHHcCCcEEEEEECCCCCCccHH-HHHHHhC
Confidence 88888889999999999998654433 4444444
No 315
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.84 E-value=4.3e-09 Score=112.68 Aligned_cols=147 Identities=26% Similarity=0.342 Sum_probs=102.8
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc---------cccchh
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH---------EAFGAM 558 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh---------E~f~~~ 558 (732)
...-+.|+++|-.|+|||||+++|........+.-.-|.|.......++ .| ..+.|.||-|. +.|...
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp-sg--~~vlltDTvGFisdLP~~LvaAF~AT 251 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP-SG--NFVLLTDTVGFISDLPIQLVAAFQAT 251 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC-CC--cEEEEeechhhhhhCcHHHHHHHHHH
Confidence 3446799999999999999999999665555555555666655555554 23 36899999993 333322
Q ss_pred hcccccccCeEEEEEEecCCCC-hhhHHHHHHHHhcCCC-------EEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCC
Q 004746 559 RARGARVTDIAVIVVAADDGIR-PQTNEAIAHAKAAGVP-------IVIAINKIDKDGANPERVMQELSSIGLMPEDWGG 630 (732)
Q Consensus 559 r~r~~~~ADiVILVVDasdgi~-~qt~EiL~~ak~~~vP-------IIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg 630 (732)
. .....+|++|.|+|++++.- .|....+.-++..++| +|=|-||+|......+ .+
T Consensus 252 L-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e-------------~E--- 314 (410)
T KOG0410|consen 252 L-EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE-------------EE--- 314 (410)
T ss_pred H-HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc-------------cc---
Confidence 2 23467899999999998654 3444455556666775 6788999997432111 11
Q ss_pred CCCEEEEecCCCCCHHHHHHHHHH
Q 004746 631 DIPMVQISALKGEKVDDLLETIML 654 (732)
Q Consensus 631 ~ipiVeVSAKtGeGIdeLfe~Ii~ 654 (732)
....+.+||++|+|+++++..+..
T Consensus 315 ~n~~v~isaltgdgl~el~~a~~~ 338 (410)
T KOG0410|consen 315 KNLDVGISALTGDGLEELLKAEET 338 (410)
T ss_pred cCCccccccccCccHHHHHHHHHH
Confidence 123689999999999999988764
No 316
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.82 E-value=5.6e-08 Score=104.77 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=72.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhh-------c
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMR-------A 560 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r-------~ 560 (732)
...++|+++|.+|+|||||+|+|++.+.. .+.....|...... .... .++.++||||||..+..... .
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~--~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMV--SRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEE--EEEE--CCeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 45689999999999999999999987753 22222233222222 2222 35689999999965432111 1
Q ss_pred ccc--cccCeEEEEEEecC-CCChhhHHHHHHHHhc-----CCCEEEEEeCCCCC
Q 004746 561 RGA--RVTDIAVIVVAADD-GIRPQTNEAIAHAKAA-----GVPIVIAINKIDKD 607 (732)
Q Consensus 561 r~~--~~ADiVILVVDasd-gi~~qt~EiL~~ak~~-----~vPIIVViNKiDL~ 607 (732)
.++ ...|++|||...+. .....+..+++.+... -.++||++|++|..
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 111 35899999976553 3444444555444331 24699999999964
No 317
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.75 E-value=3.2e-08 Score=103.96 Aligned_cols=159 Identities=25% Similarity=0.392 Sum_probs=88.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc------CCccc---ccc----CC-----------ceeeeeeEEEEeecC------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK------TKVAA---AEA----GG-----------ITQGIGAYKVQVPVD------ 538 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~------~k~~v---se~----~G-----------tTrdI~~y~v~i~id------ 538 (732)
.+.+.|.|.|.||+|||||++.|.. .++.+ .+. +| ...|-++|--.....
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 3567999999999999999999852 12211 000 00 112223333332211
Q ss_pred ------------CcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhh--HHHHHHHHhcCCCEEEEEeCC
Q 004746 539 ------------GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQT--NEAIAHAKAAGVPIVIAINKI 604 (732)
Q Consensus 539 ------------gk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt--~EiL~~ak~~~vPIIVViNKi 604 (732)
.-++.+.|+.|-|.-+-. ......+|.+++|+-..-+-.-|. .-+++.+. |+|+||+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD------i~vVNKa 177 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD------IFVVNKA 177 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S------EEEEE--
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc------EEEEeCC
Confidence 135789999999842211 122467899999997765444333 33444433 9999999
Q ss_pred CCCCCCh--HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHhh
Q 004746 605 DKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAEL 658 (732)
Q Consensus 605 DL~~a~~--erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael 658 (732)
|++.++. .++...+.-..-....| ..+++.+||.+|.||++|+++|......
T Consensus 178 D~~gA~~~~~~l~~~l~l~~~~~~~W--~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 178 DRPGADRTVRDLRSMLHLLREREDGW--RPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHCSTSCTSB----EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhhccccccCC--CCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 9754321 11222222112223344 4799999999999999999999865443
No 318
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.72 E-value=1.1e-07 Score=101.48 Aligned_cols=164 Identities=24% Similarity=0.326 Sum_probs=98.2
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcC------Cccc---cc----cC-----------CceeeeeeEEEEeec-----
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKT------KVAA---AE----AG-----------GITQGIGAYKVQVPV----- 537 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~------k~~v---se----~~-----------GtTrdI~~y~v~i~i----- 537 (732)
..-+..+|.|.|.||+|||||+..|... ++.+ .+ .+ .++.+.+.|--....
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG 126 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG 126 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence 3456789999999999999999998521 1221 00 01 122233333333221
Q ss_pred -------------CCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHH--HHHHHHhcCCCEEEEEe
Q 004746 538 -------------DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNE--AIAHAKAAGVPIVIAIN 602 (732)
Q Consensus 538 -------------dgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~E--iL~~ak~~~vPIIVViN 602 (732)
+.-++.+.|+.|-|.-+-. ......+|.+++|.-..-|-.-|.+. +++ +-=|+|+|
T Consensus 127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE------iaDi~vIN 197 (323)
T COG1703 127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIME------IADIIVIN 197 (323)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhh------hhheeeEe
Confidence 2345789999999843221 12346789999988555443333322 222 23399999
Q ss_pred CCCCCCCCh--HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHhhh
Q 004746 603 KIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQ 659 (732)
Q Consensus 603 KiDL~~a~~--erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~ 659 (732)
|.|+.+++. ..+...+..........+...+++.+||.+|+||++|++.|....+.+
T Consensus 198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 999755421 122222222221223334468999999999999999999998755443
No 319
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=98.71 E-value=3.4e-08 Score=91.71 Aligned_cols=63 Identities=35% Similarity=0.501 Sum_probs=57.8
Q ss_pred cceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcCeeE----EEEEEEcCCCC----------ccceecCCCCeeC
Q 004746 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFG----KVRALFDDSGN----------RVDEAGPSIPVQV 732 (732)
Q Consensus 670 ~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~~g----kVrsI~~~~g~----------~V~~A~pG~~V~I 732 (732)
.|.|+|+..++|.|+++++++++|+|++||.|++|+.+| +||+|.+.++. .+++|.|+..|.|
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI 78 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKI 78 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEE
Confidence 589999999999999999999999999999999998886 99999999984 8999997777654
No 320
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.70 E-value=7.7e-08 Score=97.29 Aligned_cols=97 Identities=21% Similarity=0.327 Sum_probs=62.8
Q ss_pred eeEEEEeCCCccccchhhcccccccC-eEEEEEEecCCCChhhH--HHHHHHHhcCCCEEEEEeCCCCC---CCChHHHH
Q 004746 542 QPCVFLDTPGHEAFGAMRARGARVTD-IAVIVVAADDGIRPQTN--EAIAHAKAAGVPIVIAINKIDKD---GANPERVM 615 (732)
Q Consensus 542 i~ItLIDTPGhE~f~~~r~r~~~~AD-iVILVVDasdgi~~qt~--EiL~~ak~~~vPIIVViNKiDL~---~a~~erv~ 615 (732)
..+.|+...| .+.. . ..+...| +-|+|+|++.|...-.. -.+- .-=++|+||.|+. +++.+.+.
T Consensus 97 ~Dll~iEs~G--NL~~-~-~sp~L~d~~~v~VidvteGe~~P~K~gP~i~------~aDllVInK~DLa~~v~~dlevm~ 166 (202)
T COG0378 97 LDLLFIESVG--NLVC-P-FSPDLGDHLRVVVIDVTEGEDIPRKGGPGIF------KADLLVINKTDLAPYVGADLEVMA 166 (202)
T ss_pred CCEEEEecCc--ceec-c-cCcchhhceEEEEEECCCCCCCcccCCCcee------EeeEEEEehHHhHHHhCccHHHHH
Confidence 4577777777 1111 1 1123334 88999999976432111 0000 0238999999994 35556666
Q ss_pred HHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 616 QELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 616 ~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
+...+.+ ++.+||++|+++|+|+++++++|...
T Consensus 167 ~da~~~n-------p~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 167 RDAKEVN-------PEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred HHHHHhC-------CCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 6665543 46899999999999999999998754
No 321
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.67 E-value=1.9e-07 Score=94.97 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=87.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccc--cCCceeeeeeEEEEeecCCcceeEEEEeCCCccc-------cchhhc---
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAE--AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRA--- 560 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse--~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~-------f~~~r~--- 560 (732)
+|+++|..|+||||++|.|++....... ....|.....+... +++ ..+++|||||.-+ ......
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~--~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l 77 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGE--VDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCL 77 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEE--ETT--EEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeee--ecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence 7999999999999999999987654332 23455555444442 334 6899999999321 111111
Q ss_pred -ccccccCeEEEEEEecCCCChhhHHHHHHHHh-cC----CCEEEEEeCCCCCC-CChHHHHHH-----HHHcCCCCCCC
Q 004746 561 -RGARVTDIAVIVVAADDGIRPQTNEAIAHAKA-AG----VPIVIAINKIDKDG-ANPERVMQE-----LSSIGLMPEDW 628 (732)
Q Consensus 561 -r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~-~~----vPIIVViNKiDL~~-a~~erv~~e-----L~elgl~~e~~ 628 (732)
......|++|||+.+. .+.......+..+.. .+ ..+|||++.+|... ...+++.+. +.++ ...+
T Consensus 78 ~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~l---i~~c 153 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQEL---IEKC 153 (212)
T ss_dssp HHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHH---HHHT
T ss_pred HhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHH---hhhc
Confidence 1235689999999988 666666666665543 22 24899999998643 333333321 1111 1112
Q ss_pred CCCCCEEEEecC------CCCCHHHHHHHHHHHHh
Q 004746 629 GGDIPMVQISAL------KGEKVDDLLETIMLVAE 657 (732)
Q Consensus 629 gg~ipiVeVSAK------tGeGIdeLfe~Ii~lae 657 (732)
+ -.|+.+..+ ....+.+|++.|-.+..
T Consensus 154 ~--~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~ 186 (212)
T PF04548_consen 154 G--GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQ 186 (212)
T ss_dssp T--TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CEEEEEeccccchhhhHHHHHHHHHHHHHHHH
Confidence 2 245555555 23457778777765543
No 322
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.65 E-value=1.1e-07 Score=101.39 Aligned_cols=116 Identities=20% Similarity=0.300 Sum_probs=75.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccc--------cCCceeeeeeEEEEeecCCcceeEEEEeCCCccc---------
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAE--------AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--------- 554 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse--------~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~--------- 554 (732)
++|.|+|..|.|||||+|.|+........ ....|..+......+.-++-.+.++|+||||..+
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 58999999999999999999976554321 1112334444555555567778999999999311
Q ss_pred ---------cch--------hhcccc-cccCeEEEEEEec-CCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC
Q 004746 555 ---------FGA--------MRARGA-RVTDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG 608 (732)
Q Consensus 555 ---------f~~--------~r~r~~-~~ADiVILVVDas-dgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~ 608 (732)
|.. .+.... ...|+||++++.+ +++.+.+++.++.+.. .+++|-|+.|+|...
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccC
Confidence 110 111111 4579999999986 5788999999988865 588999999999754
No 323
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=3e-07 Score=100.75 Aligned_cols=87 Identities=25% Similarity=0.241 Sum_probs=67.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeec----------C----CcceeEEEEeCCCc----
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV----------D----GKLQPCVFLDTPGH---- 552 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~i----------d----gk~i~ItLIDTPGh---- 552 (732)
.++++|+|.||||||||+|+|+........+|.+|++.+...+.++. . -....+.|+|.+|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 46899999999999999999998887778899999988766655431 1 11246899999992
Q ss_pred ---cccchhhcccccccCeEEEEEEecC
Q 004746 553 ---EAFGAMRARGARVTDIAVIVVAADD 577 (732)
Q Consensus 553 ---E~f~~~r~r~~~~ADiVILVVDasd 577 (732)
+-++......++.+|+++.|+|+.+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 3344444556689999999999983
No 324
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.64 E-value=6.5e-08 Score=103.46 Aligned_cols=152 Identities=19% Similarity=0.217 Sum_probs=84.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC-----Cccc--cccCCceee--------eeeEEEEe----------------ec
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT-----KVAA--AEAGGITQG--------IGAYKVQV----------------PV 537 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~-----k~~v--se~~GtTrd--------I~~y~v~i----------------~i 537 (732)
.....|.|+|.+|+||||||++|+.. ...+ .+. ++..| +....+.. .+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~-~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L 180 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ-QTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRL 180 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc-CcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHH
Confidence 45678999999999999999888642 1111 111 11111 11111110 01
Q ss_pred CCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC---ChHHH
Q 004746 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA---NPERV 614 (732)
Q Consensus 538 dgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a---~~erv 614 (732)
+.....+.||++-|.-..-.. ..+ ..+.-+.|+++.++... .+++-......-++|+||+|+... +.+.+
T Consensus 181 ~~~~~d~liIEnvGnLvcPa~--fdl-ge~~~v~vlsV~eg~dk----plKyp~~f~~ADIVVLNKiDLl~~~~~dle~~ 253 (290)
T PRK10463 181 PLDDNGILFIENVGNLVCPAS--FDL-GEKHKVAVLSVTEGEDK----PLKYPHMFAAASLMLLNKVDLLPYLNFDVEKC 253 (290)
T ss_pred hhcCCcEEEEECCCCccCCCc--cch-hhceeEEEEECcccccc----chhccchhhcCcEEEEEhHHcCcccHHHHHHH
Confidence 112345677777773111000 011 12334566777655321 111112224567999999999642 33444
Q ss_pred HHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 615 MQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 615 ~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
...+..+. ...++|++||++|+|+++|++||...
T Consensus 254 ~~~lr~ln-------p~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 254 IACAREVN-------PEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred HHHHHhhC-------CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 44444432 24789999999999999999999753
No 325
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.63 E-value=1.2e-07 Score=90.60 Aligned_cols=92 Identities=25% Similarity=0.221 Sum_probs=65.3
Q ss_pred hhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEE
Q 004746 557 AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQ 636 (732)
Q Consensus 557 ~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVe 636 (732)
.+..+.++.+|++|+|+|++++...+..++...+...+.|+|+|+||+|+... .... ...... .. ...++++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~--~~~~-~~~~~~---~~--~~~~~~~ 75 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK--EVLE-KWKSIK---ES--EGIPVVY 75 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH--HHHH-HHHHHH---Hh--CCCcEEE
Confidence 34455567899999999998876666666666666668999999999998532 1111 111110 01 1257999
Q ss_pred EecCCCCCHHHHHHHHHHHH
Q 004746 637 ISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 637 VSAKtGeGIdeLfe~Ii~la 656 (732)
+||++|.|+++|++.|....
T Consensus 76 iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 76 VSAKERLGTKILRRTIKELA 95 (156)
T ss_pred EEccccccHHHHHHHHHHHH
Confidence 99999999999999998654
No 326
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.53 E-value=1.2e-07 Score=100.81 Aligned_cols=83 Identities=25% Similarity=0.210 Sum_probs=60.8
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCC-------------cceeEEEEeCCCccc------
Q 004746 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDG-------------KLQPCVFLDTPGHEA------ 554 (732)
Q Consensus 494 VaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idg-------------k~i~ItLIDTPGhE~------ 554 (732)
|+|+|.||+|||||+|+|++.+..+...+++|++.....+.+.-.. -...+.|+|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999988888888999988766555542110 012599999999321
Q ss_pred -cchhhcccccccCeEEEEEEec
Q 004746 555 -FGAMRARGARVTDIAVIVVAAD 576 (732)
Q Consensus 555 -f~~~r~r~~~~ADiVILVVDas 576 (732)
++......++.+|++|+|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1212223457899999999985
No 327
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.52 E-value=1.8e-07 Score=102.92 Aligned_cols=85 Identities=26% Similarity=0.181 Sum_probs=62.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCC-------------cceeEEEEeCCCccc----
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDG-------------KLQPCVFLDTPGHEA---- 554 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idg-------------k~i~ItLIDTPGhE~---- 554 (732)
++|+|+|.||+|||||+|+|++.+..+...+++|++.....+.+.... -...+.|+||||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999988777888999988765444443110 012599999999321
Q ss_pred ---cchhhcccccccCeEEEEEEec
Q 004746 555 ---FGAMRARGARVTDIAVIVVAAD 576 (732)
Q Consensus 555 ---f~~~r~r~~~~ADiVILVVDas 576 (732)
++......++.+|++|+|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1112223458899999999985
No 328
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=7.3e-07 Score=100.75 Aligned_cols=139 Identities=22% Similarity=0.363 Sum_probs=95.8
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc--CCccccccCC-ceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK--TKVAAAEAGG-ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGAR 564 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~--~k~~vse~~G-tTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~ 564 (732)
.+.++.|+|||++|+|||||+..|.. .+....++.| +|. +.|+..+|+|+.+|. ++.. +...+.
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv----------vsgK~RRiTflEcp~--Dl~~-miDvaK 132 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV----------VSGKTRRITFLECPS--DLHQ-MIDVAK 132 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE----------eecceeEEEEEeChH--HHHH-HHhHHH
Confidence 34566788999999999999999874 2333333332 221 257778999999994 3333 345568
Q ss_pred ccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCC-ChHH-HHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 565 VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGA-NPER-VMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 565 ~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a-~~er-v~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
.||++||+||+..|+..++.|+++.+...+.| ++-|++..|+... ...+ ....| .+.+..+-+ ..+.+|.+|...
T Consensus 133 IaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrl-khRfWtEiy-qGaKlFylsgV~ 210 (1077)
T COG5192 133 IADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRL-KHRFWTEIY-QGAKLFYLSGVE 210 (1077)
T ss_pred hhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHH-hhhHHHHHc-CCceEEEecccc
Confidence 89999999999999999999999999999999 8899999998542 1111 12212 122222211 345678888553
No 329
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.50 E-value=4.8e-07 Score=94.38 Aligned_cols=92 Identities=18% Similarity=0.166 Sum_probs=66.3
Q ss_pred cccchhhcccccccCeEEEEEEecCCC-Chh-hHHHHHHHHhcCCCEEEEEeCCCCCCCChH--HHHHHHHHcCCCCCCC
Q 004746 553 EAFGAMRARGARVTDIAVIVVAADDGI-RPQ-TNEAIAHAKAAGVPIVIAINKIDKDGANPE--RVMQELSSIGLMPEDW 628 (732)
Q Consensus 553 E~f~~~r~r~~~~ADiVILVVDasdgi-~~q-t~EiL~~ak~~~vPIIVViNKiDL~~a~~e--rv~~eL~elgl~~e~~ 628 (732)
++|..+...++.++|.+++|+|+++.. ... ...++..+...++|+|+|+||+||...... +....+...
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~------- 96 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNI------- 96 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHC-------
Confidence 677777778889999999999999643 332 334445555678999999999999542211 112222221
Q ss_pred CCCCCEEEEecCCCCCHHHHHHHHH
Q 004746 629 GGDIPMVQISALKGEKVDDLLETIM 653 (732)
Q Consensus 629 gg~ipiVeVSAKtGeGIdeLfe~Ii 653 (732)
.++++++||++|.||++||+.|.
T Consensus 97 --g~~v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 97 --GYQVLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred --CCeEEEEecCCchhHHHHHhhhc
Confidence 36799999999999999999875
No 330
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.47 E-value=7.7e-07 Score=88.13 Aligned_cols=97 Identities=23% Similarity=0.190 Sum_probs=65.6
Q ss_pred ccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCCh--HHHHHHH-----HHcCCC
Q 004746 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP--ERVMQEL-----SSIGLM 624 (732)
Q Consensus 552 hE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~--erv~~eL-----~elgl~ 624 (732)
+..|..++..++..+|++|+|+|+.+....+..++. ....+.|+|+|+||+|+..... ....... ...++
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~- 97 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGL- 97 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCCccchhHH--HhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCC-
Confidence 334677788888999999999999875544433332 2235789999999999854321 1122221 11111
Q ss_pred CCCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 625 PEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 625 ~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
....+|++||++|.|+++|++.|....
T Consensus 98 -----~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 98 -----KPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred -----CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 113589999999999999999998654
No 331
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.39 E-value=4.8e-07 Score=87.08 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=43.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG 551 (732)
....|+|+|.+|+|||||+|+|++... ..+..+|+|++...+. ... .+.|+||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~----~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT----LMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE----cCC---CEEEEECcC
Confidence 456899999999999999999997654 5788899998864433 222 489999999
No 332
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.35 E-value=3.8e-07 Score=94.28 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=83.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh-----hccccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM-----RARGAR 564 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~-----r~r~~~ 564 (732)
..+|.+||..|+|||||=..+..+..+ .....|-|+|+...++.+- ++..+++||+.|++.|... ....++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl---Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL---GNLVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh---hhheeehhccCCcHHHHHHHHhhcchhhhe
Confidence 458999999999999987766644333 4456677888876666542 3457999999999866543 334568
Q ss_pred ccCeEEEEEEecCCCChhhHHHHHH----HHh--cCCCEEEEEeCCCCCCCCh
Q 004746 565 VTDIAVIVVAADDGIRPQTNEAIAH----AKA--AGVPIVIAINKIDKDGANP 611 (732)
Q Consensus 565 ~ADiVILVVDasdgi~~qt~EiL~~----ak~--~~vPIIVViNKiDL~~a~~ 611 (732)
..++.|+|||+.......+....+. +.. ....+++.+.|+|+...+.
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccch
Confidence 8999999999997655555444333 221 1334899999999976543
No 333
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.33 E-value=8.2e-07 Score=88.10 Aligned_cols=57 Identities=19% Similarity=0.490 Sum_probs=46.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG 551 (732)
.....+|+++|.+|+|||||+|+|++... .++..+|+|++...+.+ +. .+.|+||||
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~----~~---~~~l~DtPG 171 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL----DK---KVKLLDSPG 171 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe----CC---CEEEEECcC
Confidence 35568999999999999999999997665 57888999998644432 22 589999999
No 334
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.32 E-value=2.3e-06 Score=99.71 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=70.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccc-cCCceeeeeeEEEEeecCCcceeEEEEeCCCccccc------hh---
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAE-AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG------AM--- 558 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse-~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~------~~--- 558 (732)
-..+|+|||.+|+|||||+|.|++.... ... .+++|... .+ ....+ +..+.||||||..... ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~-ei--~~~id--G~~L~VIDTPGL~dt~~dq~~neeILk 191 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQ-EI--EGLVQ--GVKIRVIDTPGLKSSASDQSKNEKILS 191 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEE-EE--EEEEC--CceEEEEECCCCCccccchHHHHHHHH
Confidence 3468999999999999999999987643 333 34555432 11 11223 3579999999954321 11
Q ss_pred -hcccc--cccCeEEEEEEecCCCC-hhhHHHHHHHHh-cC----CCEEEEEeCCCCC
Q 004746 559 -RARGA--RVTDIAVIVVAADDGIR-PQTNEAIAHAKA-AG----VPIVIAINKIDKD 607 (732)
Q Consensus 559 -r~r~~--~~ADiVILVVDasdgi~-~qt~EiL~~ak~-~~----vPIIVViNKiDL~ 607 (732)
...++ ..+|++|||+.++.... .+....++.+.. ++ ..+|||+|..|..
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~l 249 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASA 249 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccC
Confidence 11233 24799999987763222 233344444422 12 3489999999975
No 335
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.30 E-value=6.7e-07 Score=80.50 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=68.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCC-ceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGG-ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~G-tTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
++|+++|+.++|||+|+.++....+. +.+. .|.. |......+++.++.++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~--~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~ 51 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFD--YVPTVFTIG---------------------------IDVYDPTSYESFDVVL 51 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCcc--ccCceehhh---------------------------hhhccccccCCCCEEE
Confidence 47999999999999999999665543 1111 1111 3333345567889999
Q ss_pred EEEEecCCCChh--hHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHH
Q 004746 571 IVVAADDGIRPQ--TNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (732)
Q Consensus 571 LVVDasdgi~~q--t~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGId 646 (732)
+|++.+...... +...+.......+|+++++||+|+.... .+.... ...++++||++|.|+.
T Consensus 52 ~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~--~~~~~~------------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 52 QCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEER--QVATEE------------GLEFAETSAKTPEEGE 115 (124)
T ss_pred EEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhC--cCCHHH------------HHHHHHHhCCCcchhh
Confidence 989887632221 2222222223457789999999983211 111111 1236678899999984
No 336
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=4.1e-06 Score=91.48 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=82.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccc---cccCCceeeeeeEEEEee----cCCc----------------------
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAA---AEAGGITQGIGAYKVQVP----VDGK---------------------- 540 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~v---se~~GtTrdI~~y~v~i~----idgk---------------------- 540 (732)
..|-|.++|....||||+|++|+.+.+.. +..+ |.+.....+.-. +.|.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEP--Ttd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEP--TTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCC--CcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 34679999999999999999999887752 2222 222111111000 0000
Q ss_pred -----------ceeEEEEeCCCc-----------cccchhhcccccccCeEEEEEEecC-CCChhhHHHHHHHHhcCCCE
Q 004746 541 -----------LQPCVFLDTPGH-----------EAFGAMRARGARVTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVPI 597 (732)
Q Consensus 541 -----------~i~ItLIDTPGh-----------E~f~~~r~r~~~~ADiVILVVDasd-gi~~qt~EiL~~ak~~~vPI 597 (732)
--.++|+||||. -+|.....-++..+|.|||+||+.. .+..+..+++..++...-.+
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 024899999993 2344445556688999999999986 67888899999999888889
Q ss_pred EEEEeCCCCCC
Q 004746 598 VIAINKIDKDG 608 (732)
Q Consensus 598 IVViNKiDL~~ 608 (732)
=||+||.|..+
T Consensus 215 RVVLNKADqVd 225 (532)
T KOG1954|consen 215 RVVLNKADQVD 225 (532)
T ss_pred EEEeccccccC
Confidence 99999999753
No 337
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.29 E-value=4.3e-06 Score=81.81 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=65.0
Q ss_pred CCCcc-ccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCC
Q 004746 549 TPGHE-AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPED 627 (732)
Q Consensus 549 TPGhE-~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~ 627 (732)
.|||- .........+..+|++|+|+|++++......+++..+ .+.|+|+|+||+|+... +.....+..+..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~--~~~~~~~~~~~~---- 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP--KKTKKWLKYFES---- 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh--HHHHHHHHHHHh----
Confidence 46653 2334445667899999999999887665555554443 36899999999999532 222111111100
Q ss_pred CCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 628 WGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 628 ~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
....++.+||+++.|+++|.+.|...
T Consensus 74 --~~~~vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 74 --KGEKVLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred --cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 01458999999999999999998764
No 338
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.26 E-value=1.8e-06 Score=85.49 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=43.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCC---------ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTK---------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k---------~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
....++|+|.+|+|||||+|+|+... ..++..+|+|++...+. ++. .+.|+||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~----~~~---~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIP----LGN---GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEe----cCC---CCEEEeCcCC
Confidence 55789999999999999999999643 34567789998863333 322 4799999993
No 339
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.25 E-value=4.9e-06 Score=80.08 Aligned_cols=89 Identities=11% Similarity=0.068 Sum_probs=62.0
Q ss_pred ccccccCeEEEEEEecCCCChhhHHHHHHHHh--cCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEe
Q 004746 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKA--AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~--~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVS 638 (732)
..+..+|++++|+|+.++.......+...+.. .++|+|+|+||+|+.. .+.....+..+... + .+.++++|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~--~~~~~~~~~~~~~~---~--~~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVP--TWVTARWVKILSKE---Y--PTIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCC--HHHHHHHHHHHhcC---C--cEEEEEee
Confidence 34678999999999998766656666666554 3489999999999953 22232333332111 1 12368899
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 004746 639 ALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 639 AKtGeGIdeLfe~Ii~la 656 (732)
|+++.|+++|++.|....
T Consensus 77 a~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 77 INNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999999997654
No 340
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.22 E-value=9.2e-06 Score=88.94 Aligned_cols=118 Identities=20% Similarity=0.250 Sum_probs=83.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcccc-----ccC---CceeeeeeEEEEeecCCcceeEEEEeCCCccc-------
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAA-----EAG---GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA------- 554 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vs-----e~~---GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~------- 554 (732)
-.++|.++|..|.|||||+|.|++...... ..+ ..|..+..+...+.-++-...++++||||.-+
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 356899999999999999999997643321 111 23455656666666667778899999999311
Q ss_pred --------------cch-----hhcccc--cccCeEEEEEEec-CCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC
Q 004746 555 --------------FGA-----MRARGA--RVTDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG 608 (732)
Q Consensus 555 --------------f~~-----~r~r~~--~~ADiVILVVDas-dgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~ 608 (732)
|.. .|...+ ...|+||+.+-.+ +++.+.+++.++.+.. .+.+|-|+-|.|...
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT 176 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCC
Confidence 111 111012 4478999999765 5899999999988754 578999999999754
No 341
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.21 E-value=4.7e-06 Score=80.18 Aligned_cols=82 Identities=18% Similarity=0.236 Sum_probs=56.8
Q ss_pred CeEEEEEEecCCCChhhHHHH-HHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 567 DIAVIVVAADDGIRPQTNEAI-AHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 567 DiVILVVDasdgi~~qt~EiL-~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
|++|+|+|+.++.......+. ..+...++|+|+|+||+|+.. .+.....+..+. ..+ ...++.+||++|.|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~--~~~~~~~~~~~~---~~~--~~~ii~vSa~~~~gi 73 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVP--KEVLRKWLAYLR---HSY--PTIPFKISATNGQGI 73 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCC--HHHHHHHHHHHH---hhC--CceEEEEeccCCcCh
Confidence 789999999886655554444 455567899999999999943 222222221111 001 246899999999999
Q ss_pred HHHHHHHHHH
Q 004746 646 DDLLETIMLV 655 (732)
Q Consensus 646 deLfe~Ii~l 655 (732)
++|++.|...
T Consensus 74 ~~L~~~i~~~ 83 (155)
T cd01849 74 EKKESAFTKQ 83 (155)
T ss_pred hhHHHHHHHH
Confidence 9999998754
No 342
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.17 E-value=2.7e-05 Score=81.78 Aligned_cols=83 Identities=25% Similarity=0.229 Sum_probs=58.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcccc-------chhhcccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF-------GAMRARGA 563 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f-------~~~r~r~~ 563 (732)
.-+|+++|-|.+||||||..+...+.....+..+|...-...+. + ++..|+++|.||.-.- +......+
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~--y--~ga~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIH--Y--NGANIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEE--e--cCceEEEecCcccccccccCCCCCceEEEEe
Confidence 45899999999999999999998776655555666443222222 3 3457999999994221 12222345
Q ss_pred cccCeEEEEEEecC
Q 004746 564 RVTDIAVIVVAADD 577 (732)
Q Consensus 564 ~~ADiVILVVDasd 577 (732)
+.||+++.|+|++.
T Consensus 138 rtaDlilMvLDatk 151 (364)
T KOG1486|consen 138 RTADLILMVLDATK 151 (364)
T ss_pred ecccEEEEEecCCc
Confidence 88999999999984
No 343
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=1.1e-05 Score=88.79 Aligned_cols=117 Identities=20% Similarity=0.271 Sum_probs=83.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCcccc-------ccCCceeeeeeEEEEeecCCcceeEEEEeCCCc-----------
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAA-------EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------- 552 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vs-------e~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh----------- 552 (732)
.+.+.++|..|.|||||+|.|+...+... ..+..|..+..+.+.+.-+|-...++++||||.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 36899999999999999999986543311 112225556666666666777788999999992
Q ss_pred ----------cccchh----hcccc--cccCeEEEEEEec-CCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC
Q 004746 553 ----------EAFGAM----RARGA--RVTDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG 608 (732)
Q Consensus 553 ----------E~f~~~----r~r~~--~~ADiVILVVDas-dgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~ 608 (732)
+.|... ....+ ...|+||+.+..+ +++.+.+++.++.+.. .+.+|-|+-|.|...
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLT 172 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCC
Confidence 111110 11122 3679999999876 4799999999888754 688999999999754
No 344
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.14 E-value=4e-06 Score=79.55 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=41.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
+++|+|.+|+|||||+|+|++... ..+..+|+|++...+. ++. .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIF----LTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEE----eCC---CEEEEECCCc
Confidence 899999999999999999997765 4666778888753322 333 5899999995
No 345
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.13 E-value=4e-05 Score=83.29 Aligned_cols=148 Identities=20% Similarity=0.227 Sum_probs=81.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC------Cccc--cccCC-----------ceeeeeeEEEEee-------------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVAA--AEAGG-----------ITQGIGAYKVQVP------------- 536 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~------k~~v--se~~G-----------tTrdI~~y~v~i~------------- 536 (732)
..+..|+|+|.+|+||||++..|... ++.. .+... .-.++.++.....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999999887521 1111 11000 0111211111100
Q ss_pred cCCcceeEEEEeCCCccccchh----hcc--------cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCC
Q 004746 537 VDGKLQPCVFLDTPGHEAFGAM----RAR--------GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKI 604 (732)
Q Consensus 537 idgk~i~ItLIDTPGhE~f~~~----r~r--------~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKi 604 (732)
....++.+.|+||||...+... ... .....+.++||+|++.+. .....+......--..-+++||+
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~~~~giIlTKl 269 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAVGLTGIILTKL 269 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhCCCCEEEEECC
Confidence 0124568999999995332211 111 113467899999998542 22222222221112357899999
Q ss_pred CCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHH
Q 004746 605 DKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLE 650 (732)
Q Consensus 605 DL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe 650 (732)
|.. ...-.+...+... ..|+.+++ +|+++++|..
T Consensus 270 D~t-~~~G~~l~~~~~~---------~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 270 DGT-AKGGVVFAIADEL---------GIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCC-CCccHHHHHHHHH---------CCCEEEEe--CCCChhhCcc
Confidence 953 3333444444443 36788888 8999987643
No 346
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.12 E-value=7.4e-06 Score=86.72 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=66.1
Q ss_pred CCCccc-cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCC
Q 004746 549 TPGHEA-FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPE 626 (732)
Q Consensus 549 TPGhE~-f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e 626 (732)
.|||-. ........+..+|++|+|+|+.++.......+.+.+. +.|+|+|+||+|+.... .....+.+...
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~~~~~~~~~~----- 76 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQWLKYFEEK----- 76 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHHHHHHHHHHc-----
Confidence 367632 2333456678999999999998776655555555442 68999999999995321 11122222221
Q ss_pred CCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 627 DWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 627 ~~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
..+++.+||+++.|+++|++.|....
T Consensus 77 ----~~~vi~iSa~~~~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 77 ----GIKALAINAKKGKGVKKIIKAAKKLL 102 (276)
T ss_pred ----CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 14689999999999999999987654
No 347
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.12 E-value=4.6e-06 Score=88.82 Aligned_cols=58 Identities=28% Similarity=0.398 Sum_probs=46.8
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
....++|+|+|.+|+|||||+|+|++.+. .++..+|+|++...+. ++. .+.|+||||.
T Consensus 118 ~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~----~~~---~~~l~DtPGi 176 (287)
T PRK09563 118 RPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIK----LGK---GLELLDTPGI 176 (287)
T ss_pred CcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEE----eCC---cEEEEECCCc
Confidence 45678999999999999999999998765 5778899999874333 222 5899999995
No 348
>PRK12289 GTPase RsgA; Reviewed
Probab=98.11 E-value=1e-05 Score=89.05 Aligned_cols=85 Identities=22% Similarity=0.316 Sum_probs=59.5
Q ss_pred ccccccCeEEEEEEecCCC-Chh-hHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEE
Q 004746 561 RGARVTDIAVIVVAADDGI-RPQ-TNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQI 637 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi-~~q-t~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeV 637 (732)
..+.++|.+|+|+|+.+.. ..+ ...++..+...++|+|+|+||+||.... .......+.. | ++.++++
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~-------~--g~~v~~i 155 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQ-------W--GYQPLFI 155 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHh-------c--CCeEEEE
Confidence 4568899999999998643 332 2445555556789999999999995321 1112222222 2 2578999
Q ss_pred ecCCCCCHHHHHHHHHH
Q 004746 638 SALKGEKVDDLLETIML 654 (732)
Q Consensus 638 SAKtGeGIdeLfe~Ii~ 654 (732)
||++|.|+++|++.|..
T Consensus 156 SA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 156 SVETGIGLEALLEQLRN 172 (352)
T ss_pred EcCCCCCHHHHhhhhcc
Confidence 99999999999998853
No 349
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.09 E-value=1.8e-05 Score=82.64 Aligned_cols=130 Identities=22% Similarity=0.318 Sum_probs=83.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcccc--------ccCCceeeeeeEEEEeecCCcceeEEEEeCCCc-----------
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAA--------EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------- 552 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vs--------e~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh----------- 552 (732)
++|.++|.+|.|||||+|.|...++... ..+. |..+....-.+.-++-..+++++||||.
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pk-T~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPK-TTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccc-eEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 6899999999999999999986554321 1222 2233333223333566678999999992
Q ss_pred ----------ccc-----chhhcccc--cccCeEEEEEEec-CCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC----
Q 004746 553 ----------EAF-----GAMRARGA--RVTDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN---- 610 (732)
Q Consensus 553 ----------E~f-----~~~r~r~~--~~ADiVILVVDas-dgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~---- 610 (732)
+.| ...+.+.+ ...++|++.+..+ +.+.+.+++.++.+.. -+.+|-|+-|.|....+
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtlTleEr~~ 204 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTLTLEERSA 204 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeecccccHHHHHH
Confidence 111 12233333 3468899988777 4688899999988764 36789999999964321
Q ss_pred -hHHHHHHHHHcCC
Q 004746 611 -PERVMQELSSIGL 623 (732)
Q Consensus 611 -~erv~~eL~elgl 623 (732)
.+++.+++..+++
T Consensus 205 FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 205 FKQRIRKELEKHGI 218 (336)
T ss_pred HHHHHHHHHHhcCc
Confidence 2344455555543
No 350
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.09 E-value=5.9e-06 Score=79.49 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=44.9
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCC-ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k-~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG 551 (732)
..+...++|+|.+|+|||||+|+|.+.. ...+..+++|++...+. ++ ..+.|+||||
T Consensus 97 ~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~----~~---~~~~liDtPG 154 (155)
T cd01849 97 LKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVK----LD---NKIKLLDTPG 154 (155)
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEE----ec---CCEEEEECCC
Confidence 3467889999999999999999999766 44667788998864332 22 2589999999
No 351
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.5e-05 Score=92.48 Aligned_cols=154 Identities=21% Similarity=0.288 Sum_probs=92.2
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceee----------------------eeeEE------------
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQG----------------------IGAYK------------ 532 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrd----------------------I~~y~------------ 532 (732)
+.++..+|+|.|+.++||||++|+++..++-.+..+.+|-- ++.+.
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 45667899999999999999999998777655444433311 00000
Q ss_pred -------EEeecCCc-----ceeEEEEeCCCc---cccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCE
Q 004746 533 -------VQVPVDGK-----LQPCVFLDTPGH---EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPI 597 (732)
Q Consensus 533 -------v~i~idgk-----~i~ItLIDTPGh---E~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPI 597 (732)
+.+.+..+ .-.+.++|.||. ..+..........+|++|||+.+.+..+....+.+......+..|
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~Kpni 264 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNI 264 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcE
Confidence 00111111 014789999994 333444445568899999999988766666666666554443338
Q ss_pred EEEEeCCCCCCCCh---HHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 598 VIAINKIDKDGANP---ERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 598 IVViNKiDL~~a~~---erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+|+.||+|.....+ +.+..++.++......- ..--+++|||+.
T Consensus 265 FIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~e-A~DrvfFVS~~e 310 (749)
T KOG0448|consen 265 FILNNKWDASASEPECKEDVLKQIHELSVVTEKE-AADRVFFVSAKE 310 (749)
T ss_pred EEEechhhhhcccHHHHHHHHHHHHhcCcccHhh-hcCeeEEEeccc
Confidence 88899999854322 33344433332211110 112478888764
No 352
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.08 E-value=7.6e-06 Score=80.08 Aligned_cols=58 Identities=33% Similarity=0.480 Sum_probs=45.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
....++++++|.+|+|||||+|+|....+ .....+++|++...+.+ + ..+.+|||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~----~---~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI----S---PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEe----c---CCEEEEECCCC
Confidence 45567999999999999999999998765 45667788887644433 2 35899999994
No 353
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.06 E-value=5.6e-05 Score=80.38 Aligned_cols=95 Identities=24% Similarity=0.313 Sum_probs=56.4
Q ss_pred cceeEEEEeCCCccccchhhc-------c-----cccccCeEEEEEEecCCCChhhHHHHHHHH-hcCCCEEEEEeCCCC
Q 004746 540 KLQPCVFLDTPGHEAFGAMRA-------R-----GARVTDIAVIVVAADDGIRPQTNEAIAHAK-AAGVPIVIAINKIDK 606 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~r~-------r-----~~~~ADiVILVVDasdgi~~qt~EiL~~ak-~~~vPIIVViNKiDL 606 (732)
.++.+.|+||||......... + ....+|.++||+|++.+ ......+.... ..+ ..-+++||+|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~-~~g~IlTKlDe 229 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVG-LTGIILTKLDG 229 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCC-CCEEEEEccCC
Confidence 447899999999643322211 1 11348999999999743 33333333322 222 36789999997
Q ss_pred CCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHH
Q 004746 607 DGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (732)
Q Consensus 607 ~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLf 649 (732)
.. ..-......... ..|+.+++ +|+++++|.
T Consensus 230 ~~-~~G~~l~~~~~~---------~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 230 TA-KGGIILSIAYEL---------KLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CC-CccHHHHHHHHH---------CcCEEEEe--CCCChHhCc
Confidence 43 222333333333 25788887 899987764
No 354
>PRK00098 GTPase RsgA; Reviewed
Probab=98.06 E-value=1.5e-05 Score=85.47 Aligned_cols=84 Identities=27% Similarity=0.317 Sum_probs=57.2
Q ss_pred ccccCeEEEEEEecCCCC-hh-hHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 563 ARVTDIAVIVVAADDGIR-PQ-TNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 563 ~~~ADiVILVVDasdgi~-~q-t~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
+.++|++|+|+|+.+... .. ...++..+...++|+++|+||+|+.. +.+........+ ..+ .++++++||+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~-~~~~~~~~~~~~----~~~--g~~v~~vSA~ 150 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLD-DLEEARELLALY----RAI--GYDVLELSAK 150 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCC-CHHHHHHHHHHH----HHC--CCeEEEEeCC
Confidence 488999999999976432 22 23455556667899999999999952 222221111111 111 2579999999
Q ss_pred CCCCHHHHHHHHH
Q 004746 641 KGEKVDDLLETIM 653 (732)
Q Consensus 641 tGeGIdeLfe~Ii 653 (732)
+|.|+++|++.|.
T Consensus 151 ~g~gi~~L~~~l~ 163 (298)
T PRK00098 151 EGEGLDELKPLLA 163 (298)
T ss_pred CCccHHHHHhhcc
Confidence 9999999998874
No 355
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.04 E-value=7e-06 Score=86.89 Aligned_cols=57 Identities=32% Similarity=0.482 Sum_probs=45.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCC-ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k-~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
.+..+|+|+|.+|+|||||+|+|++.+ ..++..+|+|++...+.+ +. .+.|+||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL----SD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe----CC---CEEEEECCCc
Confidence 456889999999999999999999766 446788999988643332 22 5899999995
No 356
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.04 E-value=5.6e-06 Score=89.88 Aligned_cols=59 Identities=34% Similarity=0.484 Sum_probs=47.2
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
+..+..++.|+|-||||||||||+|++... .++..+|+|.+.....+ +. .+.|+||||.
T Consensus 128 ~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~----~~---~i~LlDtPGi 187 (322)
T COG1161 128 LLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL----DD---GIYLLDTPGI 187 (322)
T ss_pred CCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEc----CC---CeEEecCCCc
Confidence 345568899999999999999999997765 47889999998744433 22 3899999993
No 357
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.03 E-value=2e-05 Score=86.72 Aligned_cols=96 Identities=24% Similarity=0.287 Sum_probs=68.1
Q ss_pred ccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC--ChHHHHHHH----HHcCCCC
Q 004746 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA--NPERVMQEL----SSIGLMP 625 (732)
Q Consensus 552 hE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a--~~erv~~eL----~elgl~~ 625 (732)
.++|..+...+...++++++|+|+.+....+..++.+++. +.|+++|+||+|+... ..+.....+ ...++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~- 126 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK- 126 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC-
Confidence 4678888888888999999999998765555444444432 6899999999998543 233333332 223321
Q ss_pred CCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 626 EDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 626 e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
...++++||++|.|+++|++.|...
T Consensus 127 -----~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 127 -----PVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred -----cCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1258999999999999999998653
No 358
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.02 E-value=3.8e-06 Score=92.38 Aligned_cols=111 Identities=13% Similarity=0.127 Sum_probs=66.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCC------ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccc---hhhc-
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTK------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG---AMRA- 560 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k------~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~---~~r~- 560 (732)
+.+|.|+|.+|+|||||+|+|++.. ..++..+|+|+++..+ .+++ .+.++||||..... ....
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~----~~~~---~~~l~DtPG~~~~~~~~~~l~~ 226 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEI----PLDD---GHSLYDTPGIINSHQMAHYLDK 226 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEE----EeCC---CCEEEECCCCCChhHhhhhcCH
Confidence 4689999999999999999999643 3567889999886433 2322 36899999943221 1111
Q ss_pred ---cc---ccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC
Q 004746 561 ---RG---ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG 608 (732)
Q Consensus 561 ---r~---~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~ 608 (732)
.. -.....+.++++....+....+..+..+...+..+.+.++|.+..+
T Consensus 227 ~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 227 KDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIH 280 (360)
T ss_pred HHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeE
Confidence 01 1334556666665543222222222223333455777777777544
No 359
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.02 E-value=1.1e-05 Score=76.45 Aligned_cols=75 Identities=23% Similarity=0.192 Sum_probs=53.5
Q ss_pred ccccccCeEEEEEEecCCCChhhHHHHHHHHhc--CCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEE
Q 004746 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA--GVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQI 637 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~--~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeV 637 (732)
+.+..+|++|+|+|+.++...+..++.+.+... ++|+|+|+||+|+..... ....+.+...+ ..++++
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~---------~~ii~i 77 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG---------IVVVFF 77 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC---------CeEEEE
Confidence 456889999999999988777776777777655 899999999999853211 11222222221 468999
Q ss_pred ecCCCCC
Q 004746 638 SALKGEK 644 (732)
Q Consensus 638 SAKtGeG 644 (732)
||+++.+
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9998864
No 360
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.99 E-value=1.1e-05 Score=83.20 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=59.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC--Ccccc-ccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch------hhcc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT--KVAAA-EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA------MRAR 561 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~--k~~vs-e~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~------~r~r 561 (732)
-..|+|+|.+++|||+|+|+|++. .+.+. ....+|+++-.+...+.. +.+..+.|+||+|...... +...
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHH
Confidence 346999999999999999999987 66643 346788888666655432 3456899999999533211 1122
Q ss_pred ccc--ccCeEEEEEEec
Q 004746 562 GAR--VTDIAVIVVAAD 576 (732)
Q Consensus 562 ~~~--~ADiVILVVDas 576 (732)
.+. .+|++|+.++.+
T Consensus 86 ~l~~llss~~i~n~~~~ 102 (224)
T cd01851 86 ALATLLSSVLIYNSWET 102 (224)
T ss_pred HHHHHHhCEEEEeccCc
Confidence 223 389888888765
No 361
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.97 E-value=2.2e-05 Score=82.74 Aligned_cols=81 Identities=25% Similarity=0.178 Sum_probs=55.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc-------cchhhcccccc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGARV 565 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~-------f~~~r~r~~~~ 565 (732)
+|.++|-|.+|||||+..|.+....+....++|... +.-.+..++-++.+.|.||.-+ -+......++.
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~----vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTT----VPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEE----ecceEeccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence 799999999999999999997765554444554321 2222223445799999999422 12233345588
Q ss_pred cCeEEEEEEecC
Q 004746 566 TDIAVIVVAADD 577 (732)
Q Consensus 566 ADiVILVVDasd 577 (732)
|.++++|+|+-.
T Consensus 137 cnli~~vld~~k 148 (358)
T KOG1487|consen 137 CNLIFIVLDVLK 148 (358)
T ss_pred ccEEEEEeeccC
Confidence 999999999874
No 362
>PRK14974 cell division protein FtsY; Provisional
Probab=97.96 E-value=9.9e-05 Score=80.90 Aligned_cols=96 Identities=21% Similarity=0.200 Sum_probs=55.9
Q ss_pred ceeEEEEeCCCccccch----hhccc--ccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHH
Q 004746 541 LQPCVFLDTPGHEAFGA----MRARG--ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERV 614 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~----~r~r~--~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv 614 (732)
++.+.|+||+|.-.... ..... ....|.++||+|+..+ ....+.+......--.--+++||+|... ..-..
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~~giIlTKlD~~~-~~G~~ 298 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG--NDAVEQAREFNEAVGIDGVILTKVDADA-KGGAA 298 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc--hhHHHHHHHHHhcCCCCEEEEeeecCCC-CccHH
Confidence 45799999999543221 11111 1357899999999754 2333333333221123578899999743 22233
Q ss_pred HHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHH
Q 004746 615 MQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLE 650 (732)
Q Consensus 615 ~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe 650 (732)
....... ..|+.+++ +|+++++|..
T Consensus 299 ls~~~~~---------~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 299 LSIAYVI---------GKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred HHHHHHH---------CcCEEEEe--CCCChhhccc
Confidence 3333332 35788887 8999988653
No 363
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.96 E-value=2.7e-05 Score=83.09 Aligned_cols=83 Identities=29% Similarity=0.370 Sum_probs=58.1
Q ss_pred ccccCeEEEEEEecCCC-Chhh-HHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 563 ARVTDIAVIVVAADDGI-RPQT-NEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 563 ~~~ADiVILVVDasdgi-~~qt-~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
+.++|++|+|+|+.+.. .... ..++..+...++|+++|+||+||.............. .+ .++++++||+
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~------~~--g~~v~~vSA~ 147 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEAL------AL--GYPVLAVSAK 147 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHH------hC--CCeEEEEECC
Confidence 68899999999998765 3333 3345556667899999999999954311111111111 11 3689999999
Q ss_pred CCCCHHHHHHHHH
Q 004746 641 KGEKVDDLLETIM 653 (732)
Q Consensus 641 tGeGIdeLfe~Ii 653 (732)
++.|+++|++.|.
T Consensus 148 ~g~gi~~L~~~L~ 160 (287)
T cd01854 148 TGEGLDELREYLK 160 (287)
T ss_pred CCccHHHHHhhhc
Confidence 9999999998775
No 364
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.95 E-value=2.1e-05 Score=83.88 Aligned_cols=98 Identities=18% Similarity=0.240 Sum_probs=66.6
Q ss_pred CCCccc-cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCC
Q 004746 549 TPGHEA-FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPE 626 (732)
Q Consensus 549 TPGhE~-f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e 626 (732)
.|||-. -.......+..+|++|+|+|+.++......++...+. +.|+|+|+||+|+.... .......+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~~~~~~~~~----- 79 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKKWIEYFEEQ----- 79 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHHHHHHHHHc-----
Confidence 577632 2233446678999999999998876655555444443 78999999999995321 11122222221
Q ss_pred CCCCCCCEEEEecCCCCCHHHHHHHHHHHHh
Q 004746 627 DWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 627 ~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
..+++.+||+++.|+++|++.|..+..
T Consensus 80 ----~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 80 ----GIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred ----CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 146899999999999999999876543
No 365
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.94 E-value=3.3e-05 Score=68.43 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=53.6
Q ss_pred ceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcCe------eEEEEEEEcCCCCccceecCCCCeeC
Q 004746 671 GTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA------FGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 671 g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~------~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
..|.+++..++.|+|++|+|.+|++++||.+.+++. ..+|++|+.+ ++.+++|.||+.|.|
T Consensus 3 ~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~-~~~~~~a~aGd~v~l 69 (87)
T cd03694 3 FQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRN-RSPVRVVRAGQSASL 69 (87)
T ss_pred EEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEEC-CeECCEECCCCEEEE
Confidence 456677777899999999999999999999999764 6799999988 689999999999864
No 366
>PRK01889 GTPase RsgA; Reviewed
Probab=97.85 E-value=0.00011 Score=80.82 Aligned_cols=83 Identities=25% Similarity=0.341 Sum_probs=62.2
Q ss_pred ccccCeEEEEEEecCCCChhh-HHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 563 ARVTDIAVIVVAADDGIRPQT-NEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 563 ~~~ADiVILVVDasdgi~~qt-~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+.++|.+++|++++..+.... ..++..+...+++.+||+||+||... .+.....+.... ..+++|.+||++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~-~~~~~~~~~~~~-------~g~~Vi~vSa~~ 181 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED-AEEKIAEVEALA-------PGVPVLAVSALD 181 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC-HHHHHHHHHHhC-------CCCcEEEEECCC
Confidence 478899999999987666633 45566677789999999999999643 223334444331 246899999999
Q ss_pred CCCHHHHHHHHH
Q 004746 642 GEKVDDLLETIM 653 (732)
Q Consensus 642 GeGIdeLfe~Ii 653 (732)
|.|+++|.++|.
T Consensus 182 g~gl~~L~~~L~ 193 (356)
T PRK01889 182 GEGLDVLAAWLS 193 (356)
T ss_pred CccHHHHHHHhh
Confidence 999999998874
No 367
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.85 E-value=0.00013 Score=78.90 Aligned_cols=86 Identities=13% Similarity=0.218 Sum_probs=48.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEe--ecCCcceeEEEEeCCCccccchhhcccc--
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQV--PVDGKLQPCVFLDTPGHEAFGAMRARGA-- 563 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i--~idgk~i~ItLIDTPGhE~f~~~r~r~~-- 563 (732)
...+.+|.++|+.++||||||.+|.+..- ...|. .+.+..+.+ .....-.++.+|=.-|......+....+
T Consensus 49 lpsgk~VlvlGdn~sGKtsLi~klqg~e~---~Kkgs--gLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~a 123 (473)
T KOG3905|consen 49 LPSGKNVLVLGDNGSGKTSLISKLQGSET---VKKGS--GLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPA 123 (473)
T ss_pred CCCCCeEEEEccCCCchhHHHHHhhcccc---cCCCC--CcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccc
Confidence 34567999999999999999999987542 11222 222222222 1222233455555556322222222222
Q ss_pred -ccc-CeEEEEEEecCC
Q 004746 564 -RVT-DIAVIVVAADDG 578 (732)
Q Consensus 564 -~~A-DiVILVVDasdg 578 (732)
.-+ -++||++|.++.
T Consensus 124 ts~aetlviltasms~P 140 (473)
T KOG3905|consen 124 TSLAETLVILTASMSNP 140 (473)
T ss_pred cCccceEEEEEEecCCc
Confidence 222 467888888875
No 368
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.84 E-value=3.5e-05 Score=85.26 Aligned_cols=85 Identities=24% Similarity=0.092 Sum_probs=63.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecC-------------CcceeEEEEeCCCccc---
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVD-------------GKLQPCVFLDTPGHEA--- 554 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~id-------------gk~i~ItLIDTPGhE~--- 554 (732)
.+++|+|.||+|||||+|+|.+... .....+.+|.+.....+.++-. -....+.|+|.||.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999998887 6667788888776666554311 0123689999999321
Q ss_pred ----cchhhcccccccCeEEEEEEec
Q 004746 555 ----FGAMRARGARVTDIAVIVVAAD 576 (732)
Q Consensus 555 ----f~~~r~r~~~~ADiVILVVDas 576 (732)
++......++.+|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 3333344568999999999986
No 369
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.82 E-value=8.4e-05 Score=66.33 Aligned_cols=65 Identities=22% Similarity=0.208 Sum_probs=57.6
Q ss_pred CCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 667 RNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 667 r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
.++...|.+++..++.|++++|+|.+|+|+.||.+.+.+ ...+|++|+.+ ++.+++|.+|+.|.|
T Consensus 3 ~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~-~~~~~~a~aG~~v~i 69 (91)
T cd03693 3 KPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMH-HEPLEEALPGDNVGF 69 (91)
T ss_pred CCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEEC-CcCcCEECCCCEEEE
Confidence 456778888888889999999999999999999999965 67899999988 589999999999864
No 370
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.81 E-value=8.6e-05 Score=83.72 Aligned_cols=116 Identities=19% Similarity=0.152 Sum_probs=64.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHH------cCCccc--cccC-----------CceeeeeeEEEEeecC------------
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIR------KTKVAA--AEAG-----------GITQGIGAYKVQVPVD------------ 538 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl------~~k~~v--se~~-----------GtTrdI~~y~v~i~id------------ 538 (732)
++..|+++|.+|+||||++..|. +.++.. .+.. +.-.++.++......+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35679999999999999998875 222221 1100 0011222222111001
Q ss_pred -CcceeEEEEeCCCccccc----hhhcc--cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCC
Q 004746 539 -GKLQPCVFLDTPGHEAFG----AMRAR--GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD 607 (732)
Q Consensus 539 -gk~i~ItLIDTPGhE~f~----~~r~r--~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~ 607 (732)
...+.+.|+||||.-... ..... .....|-++||+|+..+- .....+..+...--+--+++||+|-.
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq--~a~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ--AAEAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh--hHHHHHHHHHhccCCcEEEEECccCC
Confidence 125789999999943322 11111 124578899999987542 22334444433223567889999964
No 371
>PRK13796 GTPase YqeH; Provisional
Probab=97.81 E-value=2.8e-05 Score=85.83 Aligned_cols=55 Identities=27% Similarity=0.483 Sum_probs=42.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC------CccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT------KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~------k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
...+.|+|.+|||||||+|+|+.. ...++..+|||++. ..+.+++. ..++||||.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~----~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK----IEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee----EEEEcCCC---cEEEECCCc
Confidence 468999999999999999999853 22367889999986 33333332 589999995
No 372
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.81 E-value=0.00019 Score=81.97 Aligned_cols=86 Identities=15% Similarity=0.199 Sum_probs=50.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccc----
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARV---- 565 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~---- 565 (732)
....|.|+|..++||||||.+|.+.. ....+.-.++.++.+.-.......++.+|-..|...|..+....+..
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34689999999999999999987532 12222223333333322112233457777776644454444433321
Q ss_pred cCeEEEEEEecCC
Q 004746 566 TDIAVIVVAADDG 578 (732)
Q Consensus 566 ADiVILVVDasdg 578 (732)
--++|||+|.+.+
T Consensus 101 ~t~vvIvlDlS~P 113 (472)
T PF05783_consen 101 NTLVVIVLDLSKP 113 (472)
T ss_pred ceEEEEEecCCCh
Confidence 2467888999874
No 373
>PRK12288 GTPase RsgA; Reviewed
Probab=97.81 E-value=0.0001 Score=80.99 Aligned_cols=86 Identities=21% Similarity=0.220 Sum_probs=58.8
Q ss_pred ccccCeEEEEEEecCCCChhhH-HHHHHHHhcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 563 ARVTDIAVIVVAADDGIRPQTN-EAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 563 ~~~ADiVILVVDasdgi~~qt~-EiL~~ak~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
+.++|.+++|++.........+ .++..+...++|+|+|+||+|+..... ......+..+ ..+ .++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y----~~~--g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIY----RNI--GYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHH----HhC--CCeEEEEeCC
Confidence 4779999999998765554443 334445567899999999999964321 1122222211 111 2589999999
Q ss_pred CCCCHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIML 654 (732)
Q Consensus 641 tGeGIdeLfe~Ii~ 654 (732)
++.|+++|++.|..
T Consensus 192 tg~GideL~~~L~~ 205 (347)
T PRK12288 192 TGEGLEELEAALTG 205 (347)
T ss_pred CCcCHHHHHHHHhh
Confidence 99999999999864
No 374
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.79 E-value=9.9e-05 Score=64.64 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=52.8
Q ss_pred ccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 669 a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+...|.+++..+ .|++++|+|.+|++++||.+.+.+ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 2 ~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~-~~~~~~a~aGd~v~~ 65 (83)
T cd03698 2 FRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVD-DEEVDYAVAGENVRL 65 (83)
T ss_pred eEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEEC-CeECCEECCCCEEEE
Confidence 345566666666 999999999999999999999955 56899999988 589999999999864
No 375
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.79 E-value=4.1e-05 Score=73.31 Aligned_cols=56 Identities=21% Similarity=0.444 Sum_probs=40.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG 551 (732)
....+++++|.+|+|||||+|+|.+... ......|+|.+...+. .+. .+.||||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~----~~~---~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVK----ITS---KIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEE----cCC---CEEEEECcC
Confidence 3567899999999999999999996553 3455667776542222 222 589999999
No 376
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.74 E-value=5.4e-05 Score=74.96 Aligned_cols=58 Identities=19% Similarity=0.367 Sum_probs=34.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCc-cc---c----ccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKV-AA---A----EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~-~v---s----e~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~ 556 (732)
..++++|++|||||||+|.|+.... .. + .-..||++...+. +.. ...++||||...|.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~----l~~---g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP----LPD---GGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEE----ETT---SEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe----cCC---CcEEEECCCCCccc
Confidence 6899999999999999999996532 11 1 1123454443333 222 35899999965554
No 377
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.73 E-value=6.8e-05 Score=81.58 Aligned_cols=87 Identities=25% Similarity=0.221 Sum_probs=67.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecC-------------CcceeEEEEeCCCc-----
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-------------GKLQPCVFLDTPGH----- 552 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~id-------------gk~i~ItLIDTPGh----- 552 (732)
.+++.|+|.||+|||||+|+|.+........|.+|++.+...+.+... -....++++|++|.
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 459999999999999999999999888888999999987776665311 12356899999992
Q ss_pred --cccchhhcccccccCeEEEEEEecC
Q 004746 553 --EAFGAMRARGARVTDIAVIVVAADD 577 (732)
Q Consensus 553 --E~f~~~r~r~~~~ADiVILVVDasd 577 (732)
+-++.-....++.+|+++.|+++.+
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEecC
Confidence 2233334455688999999998774
No 378
>PRK12289 GTPase RsgA; Reviewed
Probab=97.69 E-value=5.3e-05 Score=83.46 Aligned_cols=57 Identities=18% Similarity=0.388 Sum_probs=40.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCC-ccccccCC-------ceeeeeeEEEEeecCCcceeEEEEeCCCccccc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGG-------ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k-~~vse~~G-------tTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~ 556 (732)
.++|+|.+|||||||||+|+... ...+..++ ||++...+. +.+. ..|+||||...+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~----l~~g---~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFE----LPNG---GLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEE----CCCC---cEEEeCCCccccc
Confidence 48999999999999999999553 33455555 787764443 2222 2799999965443
No 379
>PRK12288 GTPase RsgA; Reviewed
Probab=97.66 E-value=5.1e-05 Score=83.38 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=39.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCc-cccccC-------CceeeeeeEEEEeecCCcceeEEEEeCCCccccc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKV-AAAEAG-------GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~-------GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~ 556 (732)
.++|+|.+|||||||||+|+.... ..++.+ .||++...|.+ .+. ..|+||||...|.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l----~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF----PHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe----cCC---CEEEECCCCCccc
Confidence 489999999999999999996543 333333 25666544443 222 3599999976664
No 380
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.0003 Score=78.21 Aligned_cols=149 Identities=22% Similarity=0.283 Sum_probs=77.1
Q ss_pred cccCCCCEEEEEeCCCCCHHHHHHHHHcCCccc---cccCCceee------------------eeeEEEEee-------c
Q 004746 486 KLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA---AEAGGITQG------------------IGAYKVQVP-------V 537 (732)
Q Consensus 486 ~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~v---se~~GtTrd------------------I~~y~v~i~-------i 537 (732)
....++-.++|+|++|+||||++..|...-... ....-+|.| +.++.+... .
T Consensus 132 ~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~ 211 (374)
T PRK14722 132 ALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA 211 (374)
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH
Confidence 345667899999999999999999886321100 001111111 111111100 0
Q ss_pred CCcceeEEEEeCCCccccchhh----c--ccccccCeEEEEEEecCCCChhhHHHHHHHHhc-CCC-------EEEEEeC
Q 004746 538 DGKLQPCVFLDTPGHEAFGAMR----A--RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA-GVP-------IVIAINK 603 (732)
Q Consensus 538 dgk~i~ItLIDTPGhE~f~~~r----~--r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~-~vP-------IIVViNK 603 (732)
...++.+.||||+|...+.... . ......+-.+||++++.+..... +.+..+... +.| -=+++||
T Consensus 212 ~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~-evi~~f~~~~~~p~~~~~~~~~~I~TK 290 (374)
T PRK14722 212 ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN-EVVQAYRSAAGQPKAALPDLAGCILTK 290 (374)
T ss_pred HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH-HHHHHHHHhhcccccccCCCCEEEEec
Confidence 1134689999999954332211 1 12233456789999886533222 233333322 222 3577899
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 604 IDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 604 iDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
.|-.. ..-.+...+...+ .|+.+++ +|++|.+
T Consensus 291 lDEt~-~~G~~l~~~~~~~---------lPi~yvt--~Gq~VPe 322 (374)
T PRK14722 291 LDEAS-NLGGVLDTVIRYK---------LPVHYVS--TGQKVPE 322 (374)
T ss_pred cccCC-CccHHHHHHHHHC---------cCeEEEe--cCCCCCc
Confidence 99643 3334444444433 3455444 5665544
No 381
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.65 E-value=0.00021 Score=62.39 Aligned_cols=61 Identities=26% Similarity=0.222 Sum_probs=52.8
Q ss_pred ceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 671 GTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 671 g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
..|.+.+..++.|++++|+|.+|++++||.+.+.+ ..++|++|+.+ ++.+++|.||+.|.|
T Consensus 3 ~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~-~~~~~~a~aGd~v~i 65 (83)
T cd03696 3 LPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVH-GKDVEEAKAGDRVAL 65 (83)
T ss_pred EEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEEC-CcCcCEEcCCCEEEE
Confidence 45566666788999999999999999999999954 57899999988 589999999999864
No 382
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.001 Score=76.88 Aligned_cols=145 Identities=19% Similarity=0.284 Sum_probs=76.3
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcC--------Cccc--cccCCc-----------eeeeeeEEEEee------c-C
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKT--------KVAA--AEAGGI-----------TQGIGAYKVQVP------V-D 538 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~--------k~~v--se~~Gt-----------TrdI~~y~v~i~------i-d 538 (732)
....+..|+|+|..|+|||||+..|... ++.. .+...+ ..++.++..... + .
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~ 425 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER 425 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH
Confidence 3456789999999999999999887531 1111 110000 001111111000 0 1
Q ss_pred CcceeEEEEeCCCccccchhhcc---cc--cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHH
Q 004746 539 GKLQPCVFLDTPGHEAFGAMRAR---GA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER 613 (732)
Q Consensus 539 gk~i~ItLIDTPGhE~f~~~r~r---~~--~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~er 613 (732)
...+.+.||||+|...+...... .+ ......+||+++.... .+..+.+..+... .+.-+|+||+|... ..-.
T Consensus 426 l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~-~Dl~eii~~f~~~-~~~gvILTKlDEt~-~lG~ 502 (559)
T PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHF-SDLDEVVRRFAHA-KPQGVVLTKLDETG-RFGS 502 (559)
T ss_pred hccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCCh-hHHHHHHHHHHhh-CCeEEEEecCcCcc-chhH
Confidence 13468999999995332211110 01 1123567788876432 2333455555443 45779999999743 3344
Q ss_pred HHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 614 v~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
....+...+ .++.+++ +|+.|
T Consensus 503 aLsv~~~~~---------LPI~yvt--~GQ~V 523 (559)
T PRK12727 503 ALSVVVDHQ---------MPITWVT--DGQRV 523 (559)
T ss_pred HHHHHHHhC---------CCEEEEe--CCCCc
Confidence 555555443 3455554 56666
No 383
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.62 E-value=0.00023 Score=69.43 Aligned_cols=112 Identities=24% Similarity=0.280 Sum_probs=61.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcc------ccccCCceee--------eeeEEEEe-------------ec-------
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVA------AAEAGGITQG--------IGAYKVQV-------------PV------- 537 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~------vse~~GtTrd--------I~~y~v~i-------------~i------- 537 (732)
|.++|+|..|+|||||+++++..... ..+.+....+ ...+.+.. .+
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~ 80 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL 80 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence 46789999999999999998854211 0111111100 01111110 00
Q ss_pred --CCcceeEEEEeCCCccccchhh--------cccccccCeEEEEEEecCCCCh--hhHHHHHHHHhcCCCEEEEEeCCC
Q 004746 538 --DGKLQPCVFLDTPGHEAFGAMR--------ARGARVTDIAVIVVAADDGIRP--QTNEAIAHAKAAGVPIVIAINKID 605 (732)
Q Consensus 538 --dgk~i~ItLIDTPGhE~f~~~r--------~r~~~~ADiVILVVDasdgi~~--qt~EiL~~ak~~~vPIIVViNKiD 605 (732)
......+.|+||||..+-.... ....-..|.+++++|+...... .......++..++ +|++||+|
T Consensus 81 ~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad---~ivlnk~d 157 (158)
T cd03112 81 DAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD---RILLNKTD 157 (158)
T ss_pred HhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC---EEEEeccc
Confidence 0124578999999943211111 1223568999999998752211 1122334444433 78999999
Q ss_pred C
Q 004746 606 K 606 (732)
Q Consensus 606 L 606 (732)
+
T Consensus 158 l 158 (158)
T cd03112 158 L 158 (158)
T ss_pred C
Confidence 6
No 384
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.59 E-value=0.00046 Score=78.69 Aligned_cols=135 Identities=21% Similarity=0.354 Sum_probs=85.1
Q ss_pred cccCCCCEEEEEeCCCCCHHHHHHHHHcCCccc-c--c------------------------------------------
Q 004746 486 KLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA-A--E------------------------------------------ 520 (732)
Q Consensus 486 ~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~v-s--e------------------------------------------ 520 (732)
.+...-|+|+++|+-.+||||.|..+...+... + +
T Consensus 303 nt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e 382 (980)
T KOG0447|consen 303 NTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHE 382 (980)
T ss_pred cccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHH
Confidence 345567899999999999999999886443221 0 0
Q ss_pred ---------cCCceeeeeeEEEEeecCCcc-eeEEEEeCCCc-------------cccchhhcccccccCeEEEEEE-ec
Q 004746 521 ---------AGGITQGIGAYKVQVPVDGKL-QPCVFLDTPGH-------------EAFGAMRARGARVTDIAVIVVA-AD 576 (732)
Q Consensus 521 ---------~~GtTrdI~~y~v~i~idgk~-i~ItLIDTPGh-------------E~f~~~r~r~~~~ADiVILVVD-as 576 (732)
..|.|..- ..+.+++.|.+ .++.++|.||. +.+..|...++.+.++|||||- .+
T Consensus 383 ~E~RMr~sVr~GkTVSn--EvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS 460 (980)
T KOG0447|consen 383 IELRMRKNVKEGCTVSP--ETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS 460 (980)
T ss_pred HHHHHHhcccCCccccc--ceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC
Confidence 11222221 11222223322 46889999992 3344556677899999999983 22
Q ss_pred -CCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC---CChHHHHHHHHHcC
Q 004746 577 -DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG---ANPERVMQELSSIG 622 (732)
Q Consensus 577 -dgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~---a~~erv~~eL~elg 622 (732)
+......-.+..++.-.+...|+|++|.|+.. ++++++.+.++..-
T Consensus 461 VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKL 510 (980)
T KOG0447|consen 461 VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKL 510 (980)
T ss_pred cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCc
Confidence 11111223444555566778999999999965 57888888877643
No 385
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.57 E-value=0.0011 Score=76.39 Aligned_cols=161 Identities=15% Similarity=0.195 Sum_probs=94.3
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccccc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
..++-+.+.++|..++|||.||+.+++..+.....+.+........+... +....+.+-|.+-. ....+.... ..|
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~--g~~k~LiL~ei~~~-~~~~l~~ke-~~c 496 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK--GQQKYLILREIGED-DQDFLTSKE-AAC 496 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec--cccceEEEeecCcc-ccccccCcc-cee
Confidence 34555678999999999999999999876655433333222222223322 44445666665543 222222222 678
Q ss_pred CeEEEEEEecCCCChhhH-HHHHHH-HhcCCCEEEEEeCCCCCCCChHH---HHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 567 DIAVIVVAADDGIRPQTN-EAIAHA-KAAGVPIVIAINKIDKDGANPER---VMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 567 DiVILVVDasdgi~~qt~-EiL~~a-k~~~vPIIVViNKiDL~~a~~er---v~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
|+++++||.++....... +..++. ....+|+++|+.|+|+.....+. -.+...++++ -+-+.+|.++
T Consensus 497 Dv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i--------~~P~~~S~~~ 568 (625)
T KOG1707|consen 497 DVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGL--------PPPIHISSKT 568 (625)
T ss_pred eeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCChHHHHHhcCC--------CCCeeeccCC
Confidence 999999999964433332 222221 22679999999999996432100 0112222332 2345666664
Q ss_pred CCCHHHHHHHHHHHHhhhh
Q 004746 642 GEKVDDLLETIMLVAELQE 660 (732)
Q Consensus 642 GeGIdeLfe~Ii~lael~~ 660 (732)
... .++|..|+..+..++
T Consensus 569 ~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 569 LSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCC-chHHHHHHHhhhCCC
Confidence 222 889999987776554
No 386
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.56 E-value=0.00039 Score=75.41 Aligned_cols=79 Identities=20% Similarity=0.165 Sum_probs=56.1
Q ss_pred ceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCC--------ChhhHHHH---HHHHh
Q 004746 524 ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI--------RPQTNEAI---AHAKA 592 (732)
Q Consensus 524 tTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi--------~~qt~EiL---~~ak~ 592 (732)
.|.++....+.+ +++.+.+||++|+..+...|..++..++++|+|+|.++-. .....+.+ ..+..
T Consensus 147 ~T~Gi~~~~f~~----~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~ 222 (317)
T cd00066 147 KTTGIVETKFTI----KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN 222 (317)
T ss_pred ccCCeeEEEEEe----cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh
Confidence 355554444332 4578999999999999999999999999999999998621 11122222 22211
Q ss_pred ----cCCCEEEEEeCCCC
Q 004746 593 ----AGVPIVIAINKIDK 606 (732)
Q Consensus 593 ----~~vPIIVViNKiDL 606 (732)
.++|+|+++||+|+
T Consensus 223 ~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 223 SRWFANTSIILFLNKKDL 240 (317)
T ss_pred CccccCCCEEEEccChHH
Confidence 47899999999996
No 387
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.53 E-value=0.0002 Score=63.41 Aligned_cols=61 Identities=25% Similarity=0.140 Sum_probs=51.6
Q ss_pred ceEEEEeeccCCCceEEEEEEeeEEecCCEEEEc----CeeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 671 GTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCG----EAFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 671 g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G----~~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
..|.+.+..++.|++++|+|.+|+++.||.+.+. ....+|++|+.+ ++.+++|.||+.|.|
T Consensus 3 ~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~-~~~~~~a~~G~~v~l 67 (87)
T cd03697 3 MPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMF-RKTLDEAEAGDNVGV 67 (87)
T ss_pred eeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEEC-CcCCCEECCCCEEEE
Confidence 3455666668899999999999999999999874 346789999988 589999999999864
No 388
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.52 E-value=0.00012 Score=76.58 Aligned_cols=56 Identities=20% Similarity=0.409 Sum_probs=38.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcc-cccc-------CCceeeeeeEEEEeecCCcceeEEEEeCCCcccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEA-------GGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF 555 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~-------~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f 555 (732)
..++|+|.+|+|||||+|+|+..... .++. ..||++...+.+ .+ ..|+||||...|
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l----~~----~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF----HG----GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc----CC----cEEEeCCCcccc
Confidence 47899999999999999999965322 2222 236776544442 22 379999996544
No 389
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=97.52 E-value=0.00041 Score=60.80 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=50.3
Q ss_pred eEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 672 TVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 672 ~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
.|.+.+...+.|..++|+|.+|++++||.+.+.+ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 4 ~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~-~~~~~~a~aGd~v~l 65 (81)
T cd03695 4 PVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETF-DGELDEAGAGESVTL 65 (81)
T ss_pred eEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEEC-CcEeCEEcCCCEEEE
Confidence 4555555556777899999999999999999944 56899999988 689999999999864
No 390
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.51 E-value=0.00082 Score=76.19 Aligned_cols=116 Identities=23% Similarity=0.254 Sum_probs=62.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc----C--Cccc--cc--cCC---------ceeeeeeEEEEeec-----------C
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK----T--KVAA--AE--AGG---------ITQGIGAYKVQVPV-----------D 538 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~----~--k~~v--se--~~G---------tTrdI~~y~v~i~i-----------d 538 (732)
.++..|+|+|.+|+||||++..|.. . ++.. .+ .++ ...++.++...... .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 4567899999999999999887742 1 1110 00 000 00111111110000 0
Q ss_pred CcceeEEEEeCCCccccchhh------cccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCC
Q 004746 539 GKLQPCVFLDTPGHEAFGAMR------ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKD 607 (732)
Q Consensus 539 gk~i~ItLIDTPGhE~f~~~r------~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~ 607 (732)
...+.+.|+||||...+.... ...+..+|.++||+|++.+ .+..+.+..+.. .++ .-+++||+|-.
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGT 245 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCC
Confidence 122479999999954432211 1223467999999999765 233333333221 244 35788999963
No 391
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.49 E-value=0.00068 Score=74.42 Aligned_cols=79 Identities=19% Similarity=0.116 Sum_probs=56.1
Q ss_pred ceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCC-----------ChhhHHHHHHHHh
Q 004746 524 ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-----------RPQTNEAIAHAKA 592 (732)
Q Consensus 524 tTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi-----------~~qt~EiL~~ak~ 592 (732)
.|.++....+.+ .++.+.+||..|+..+...|..++..++++|+|+|+++-- ..+..+.+..+..
T Consensus 170 ~T~Gi~~~~f~~----~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~ 245 (342)
T smart00275 170 PTTGIQETAFIV----KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN 245 (342)
T ss_pred CccceEEEEEEE----CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence 354544333332 3467999999999999999999999999999999999621 1222233332221
Q ss_pred ----cCCCEEEEEeCCCC
Q 004746 593 ----AGVPIVIAINKIDK 606 (732)
Q Consensus 593 ----~~vPIIVViNKiDL 606 (732)
.+.|+|+++||+|+
T Consensus 246 ~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 246 SRWFANTSIILFLNKIDL 263 (342)
T ss_pred CccccCCcEEEEEecHHh
Confidence 46899999999997
No 392
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.47 E-value=0.0005 Score=60.15 Aligned_cols=60 Identities=23% Similarity=0.315 Sum_probs=49.6
Q ss_pred cceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 670 ~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
...|.+++.. .|++++|+|.+|+|++||.+.+.+ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 3 r~~I~~v~~~--~g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~-~~~~~~a~aGd~v~l 64 (82)
T cd04089 3 RLPIIDKYKD--MGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNE-DVEVRYARPGENVRL 64 (82)
T ss_pred EEEEEeEEEc--CCEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEEC-CEECCEECCCCEEEE
Confidence 3445555533 489999999999999999999955 56899999988 589999999999864
No 393
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.38 E-value=0.00024 Score=76.59 Aligned_cols=59 Identities=22% Similarity=0.412 Sum_probs=38.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCC-ccc---cc----cCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTK-VAA---AE----AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA 557 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k-~~v---se----~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~ 557 (732)
...+++|++|||||||+|+|.... ... ++ -..||++...|. +.+.+ .++||||...|..
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~----l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFP----LPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEE----cCCCC---EEEeCCCCCccCc
Confidence 378999999999999999998432 211 22 223555543333 43222 7899999766653
No 394
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.35 E-value=0.00016 Score=82.01 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=45.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCC-ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k-~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
...|++||-|||||||+||+|.+.+ +.++..||-|.|+..+.+. . .+.|.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls----~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS----P---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC----C---CceecCCCCc
Confidence 3689999999999999999999776 4589999999997555443 2 4899999993
No 395
>PRK13796 GTPase YqeH; Provisional
Probab=97.34 E-value=0.00095 Score=73.85 Aligned_cols=93 Identities=28% Similarity=0.288 Sum_probs=58.1
Q ss_pred ccchhhcccccccC-eEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC--ChHHHHHHHH----HcCCCCC
Q 004746 554 AFGAMRARGARVTD-IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA--NPERVMQELS----SIGLMPE 626 (732)
Q Consensus 554 ~f~~~r~r~~~~AD-iVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a--~~erv~~eL~----elgl~~e 626 (732)
+|.... ..+...| ++++|+|+.+....+. ..+..+. .+.|+++|+||+|+... ..+++...+. .+++.
T Consensus 58 ~~~~~l-~~i~~~~~lIv~VVD~~D~~~s~~-~~L~~~~-~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~-- 132 (365)
T PRK13796 58 DFLKLL-NGIGDSDALVVNVVDIFDFNGSWI-PGLHRFV-GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR-- 132 (365)
T ss_pred HHHHHH-HhhcccCcEEEEEEECccCCCchh-HHHHHHh-CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCC--
Confidence 444433 3334445 9999999988443333 3333322 26899999999999542 2233332322 22221
Q ss_pred CCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 627 DWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 627 ~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
...++.+||++|.|+++|++.|...
T Consensus 133 ----~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 133 ----PVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred ----cCcEEEEECCCCCCHHHHHHHHHHh
Confidence 1258999999999999999998643
No 396
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.33 E-value=0.00059 Score=66.17 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=37.0
Q ss_pred ceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCC
Q 004746 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiD 605 (732)
.+.+.|+||+|.... ....+..+|.+|+|...+ ....+..+ .......--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe---~~D~y~~~-k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPG---AGDDIQAI-KAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCC---chhHHHHh-hhhHhhhcCEEEEeCCC
Confidence 578999999995432 234678899999998655 11222222 22223344589999998
No 397
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.24 E-value=0.0032 Score=72.28 Aligned_cols=148 Identities=20% Similarity=0.230 Sum_probs=74.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCcc-cc--ccCCceeee------------------eeEEEEee-------cCC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AA--EAGGITQGI------------------GAYKVQVP-------VDG 539 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vs--e~~GtTrdI------------------~~y~v~i~-------idg 539 (732)
..++..++|+|..|+||||++..|...... .+ ...-++.|. ..+..... ..-
T Consensus 253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L 332 (484)
T PRK06995 253 LDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSEL 332 (484)
T ss_pred ccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhc
Confidence 345678999999999999999987631100 00 000011110 00000000 011
Q ss_pred cceeEEEEeCCCccccchhh---cccc---cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHH
Q 004746 540 KLQPCVFLDTPGHEAFGAMR---ARGA---RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER 613 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~r---~r~~---~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~er 613 (732)
.++.+.++||+|........ ...+ ...+-.+||+|++.+. ....+.+..+...++ --+++||+|-.. ..-.
T Consensus 333 ~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-~~l~~i~~~f~~~~~-~g~IlTKlDet~-~~G~ 409 (484)
T PRK06995 333 RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-DTLNEVVQAYRGPGL-AGCILTKLDEAA-SLGG 409 (484)
T ss_pred cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-HHHHHHHHHhccCCC-CEEEEeCCCCcc-cchH
Confidence 24568999999932221110 0111 1123378899887432 222334444443332 356789999642 3334
Q ss_pred HHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH-HHHH
Q 004746 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKV-DDLL 649 (732)
Q Consensus 614 v~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI-deLf 649 (732)
+...+...+ .++.+++ +|++| ++|.
T Consensus 410 ~l~i~~~~~---------lPI~yvt--~GQ~VPeDL~ 435 (484)
T PRK06995 410 ALDVVIRYK---------LPLHYVS--NGQRVPEDLH 435 (484)
T ss_pred HHHHHHHHC---------CCeEEEe--cCCCChhhhc
Confidence 444444443 3555544 68888 5543
No 398
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.23 E-value=0.00097 Score=73.50 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=49.2
Q ss_pred cceeEEEEeCCCccccchhhcccccccCeEEEEEEecC--CC------ChhhHHHHHH---HHh----cCCCEEEEEeCC
Q 004746 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD--GI------RPQTNEAIAH---AKA----AGVPIVIAINKI 604 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasd--gi------~~qt~EiL~~---ak~----~~vPIIVViNKi 604 (732)
++..+.++|.+||..-..-|...+..++++|||++.++ .+ .....|.+.. +.. .+.++|+.+||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 45789999999988777778888899999999999985 11 1112233322 222 367899999999
Q ss_pred CC
Q 004746 605 DK 606 (732)
Q Consensus 605 DL 606 (732)
||
T Consensus 273 DL 274 (354)
T KOG0082|consen 273 DL 274 (354)
T ss_pred HH
Confidence 98
No 399
>PRK00098 GTPase RsgA; Reviewed
Probab=97.20 E-value=0.00046 Score=74.14 Aligned_cols=58 Identities=28% Similarity=0.461 Sum_probs=38.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccC-------CceeeeeeEEEEeecCCcceeEEEEeCCCcccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAG-------GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF 555 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~-------GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f 555 (732)
+..++|+|.+|+|||||+|+|++.... .+... .+|++...+. +.+. ..|+||||...|
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~----~~~~---~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD----LPGG---GLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE----cCCC---cEEEECCCcCcc
Confidence 457999999999999999999865432 22222 2555543332 2222 489999996544
No 400
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.00039 Score=76.94 Aligned_cols=115 Identities=30% Similarity=0.366 Sum_probs=81.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc-------CCc---------------------cccccCCceeeeeeEEEEeecCCcc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK-------TKV---------------------AAAEAGGITQGIGAYKVQVPVDGKL 541 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~-------~k~---------------------~vse~~GtTrdI~~y~v~i~idgk~ 541 (732)
-.++|+++||.++||||+.-..+. ..+ ......++|+++ ..+. +....
T Consensus 6 ~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~--~l~~--~~t~k 81 (391)
T KOG0052|consen 6 IHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDI--ALWK--FETSK 81 (391)
T ss_pred cccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEE--Eeec--cccee
Confidence 347899999999999997653210 000 011122344332 2222 23456
Q ss_pred eeEEEEeCCCccccchhhcccccccCeEEEEEEecC-------CCChhhHHHHHHHHhcCC-CEEEEEeCCCCCC
Q 004746 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD-------GIRPQTNEAIAHAKAAGV-PIVIAINKIDKDG 608 (732)
Q Consensus 542 i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasd-------gi~~qt~EiL~~ak~~~v-PIIVViNKiDL~~ 608 (732)
+.++++|.|||..|...+..+...+|+.++++.+.. ....|+.++...+..+++ +.|+.+||+|...
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 789999999999999999999999999999998843 346788888888777765 4899999999744
No 401
>PRK13695 putative NTPase; Provisional
Probab=97.14 E-value=0.0037 Score=61.30 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=47.4
Q ss_pred ccccCeEEEEEE---ecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 563 ARVTDIAVIVVA---ADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 563 ~~~ADiVILVVD---asdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
+..+|+ +++| ..+....+..+.+..+...+.|+|++.||... ..+...+..+ .+..++.+
T Consensus 94 l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~-----~~~~~~i~~~--------~~~~i~~~-- 156 (174)
T PRK13695 94 LEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRSV-----HPFVQEIKSR--------PGGRVYEL-- 156 (174)
T ss_pred cCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchhh-----HHHHHHHhcc--------CCcEEEEE--
Confidence 356676 6788 45555666777777777778999999998543 2223333322 12445655
Q ss_pred CCCCCHHHHHHHHHH
Q 004746 640 LKGEKVDDLLETIML 654 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~ 654 (732)
+-+|-+++...|..
T Consensus 157 -~~~~r~~~~~~~~~ 170 (174)
T PRK13695 157 -TPENRDSLPFEILN 170 (174)
T ss_pred -cchhhhhHHHHHHH
Confidence 66777788888765
No 402
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.08 E-value=0.0013 Score=82.69 Aligned_cols=108 Identities=24% Similarity=0.295 Sum_probs=62.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccc--------cCCceeeeeeEEEEeecCCcceeEEEEeCCCc----c----c
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAE--------AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----E----A 554 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse--------~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh----E----~ 554 (732)
-|=.+|||.+|+||||||..- +-.+...+ ..+-|++++.+ +.. ...||||+|. + .
T Consensus 111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww-----f~~---~avliDtaG~y~~~~~~~~~ 181 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW-----FTD---EAVLIDTAGRYTTQDSDPEE 181 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE-----ecC---CEEEEcCCCccccCCCcccc
Confidence 356899999999999999876 22232211 11223333222 222 4679999992 1 1
Q ss_pred cchhhc---------ccccccCeEEEEEEecCCCChhh---HHH-------HHHH---HhcCCCEEEEEeCCCCC
Q 004746 555 FGAMRA---------RGARVTDIAVIVVAADDGIRPQT---NEA-------IAHA---KAAGVPIVIAINKIDKD 607 (732)
Q Consensus 555 f~~~r~---------r~~~~ADiVILVVDasdgi~~qt---~Ei-------L~~a---k~~~vPIIVViNKiDL~ 607 (732)
....|. +.-+-.|+||+++|+.+-+.... ..+ +..+ -...+|+.|++||||+.
T Consensus 182 ~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 182 DAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred cHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 112222 22245799999999996332111 111 1111 12478999999999974
No 403
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.08 E-value=0.0031 Score=61.55 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=38.3
Q ss_pred ceeEEEEeCCCccccch----hhccc--ccccCeEEEEEEecCCCChhhHHHHHH-HHhcCCCEEEEEeCCCCCC
Q 004746 541 LQPCVFLDTPGHEAFGA----MRARG--ARVTDIAVIVVAADDGIRPQTNEAIAH-AKAAGVPIVIAINKIDKDG 608 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~----~r~r~--~~~ADiVILVVDasdgi~~qt~EiL~~-ak~~~vPIIVViNKiDL~~ 608 (732)
++.+.|+||||...+.. ..... +...|.++||+|+... ....+.+.. .+..++ .-+++||+|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG--QDAVNQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--hHHHHHHHHHHhhCCC-CEEEEECCcCCC
Confidence 45789999999643221 11111 1348999999998633 223333333 233343 567789999754
No 404
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.07 E-value=0.001 Score=71.17 Aligned_cols=58 Identities=26% Similarity=0.464 Sum_probs=38.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcc-ccc-------cCCceeeeeeEEEEeecCCcceeEEEEeCCCccccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAE-------AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~-vse-------~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~ 556 (732)
..++++|++|+|||||+|.|++.... .+. -..+|++...+ .+.+. ..++||||...|.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~----~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELF----PLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEE----EcCCC---CEEEECCCCCccC
Confidence 57999999999999999999865432 111 12355543222 23222 3799999986654
No 405
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.07 E-value=0.0015 Score=66.43 Aligned_cols=93 Identities=23% Similarity=0.310 Sum_probs=51.3
Q ss_pred ceeEEEEeCCCccccchh----hcccc--cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHH
Q 004746 541 LQPCVFLDTPGHEAFGAM----RARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERV 614 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~----r~r~~--~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv 614 (732)
++.+.||||||...+... +...+ ...+-++||+|++.+.. .......+....++. =++++|.|-.. ..-.+
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~-~~~~~~~~~~~~~~~-~lIlTKlDet~-~~G~~ 159 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE-DLEQALAFYEAFGID-GLILTKLDETA-RLGAL 159 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH-HHHHHHHHHHHSSTC-EEEEESTTSSS-TTHHH
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH-HHHHHHHHhhcccCc-eEEEEeecCCC-Ccccc
Confidence 367999999995433221 11111 35688999999986422 222333444444444 45599999743 33445
Q ss_pred HHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 615 MQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 615 ~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
...+...+ .|+-.+| +|++|++
T Consensus 160 l~~~~~~~---------~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 160 LSLAYESG---------LPISYIT--TGQRVDD 181 (196)
T ss_dssp HHHHHHHT---------SEEEEEE--SSSSTTG
T ss_pred eeHHHHhC---------CCeEEEE--CCCChhc
Confidence 55555443 3455544 5666644
No 406
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.06 E-value=0.0037 Score=70.82 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=36.8
Q ss_pred ceeEEEEeCCCccccchhhc------ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCC
Q 004746 541 LQPCVFLDTPGHEAFGAMRA------RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDK 606 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~------r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL 606 (732)
++.+.|+||||...+..... ...-..|.++||+|+..+ ....+.+..+.. .++ .=+++||+|-
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~-~v~i~giIlTKlD~ 251 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNE-RLGLTGVVLTKLDG 251 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHh-hCCCCEEEEeCccC
Confidence 46799999999533221111 112347889999998743 233333333321 233 3567999995
No 407
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.0048 Score=74.12 Aligned_cols=145 Identities=21% Similarity=0.219 Sum_probs=73.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCc-ccc--ccCCceee------------------eeeEEEEee-------cCCcc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV-AAA--EAGGITQG------------------IGAYKVQVP-------VDGKL 541 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vs--e~~GtTrd------------------I~~y~v~i~-------idgk~ 541 (732)
.+-.|+|+|..|+||||++..|..... ..+ ...-++.| +.++.+.-. -...+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 456899999999999999998763210 000 00000100 101100000 01134
Q ss_pred eeEEEEeCCCccccc----hhhcc--cccccCeEEEEEEecCCCChhh-HHHHHHHHhc-CC-CEEEEEeCCCCCCCChH
Q 004746 542 QPCVFLDTPGHEAFG----AMRAR--GARVTDIAVIVVAADDGIRPQT-NEAIAHAKAA-GV-PIVIAINKIDKDGANPE 612 (732)
Q Consensus 542 i~ItLIDTPGhE~f~----~~r~r--~~~~ADiVILVVDasdgi~~qt-~EiL~~ak~~-~v-PIIVViNKiDL~~a~~e 612 (732)
+.+.||||||..... ..... .....+-++||+|++.. .++ .+++..+... .. .-=+|+||.|-.. ..-
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~-~~G 340 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEAT-HLG 340 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCCC-Ccc
Confidence 579999999932211 11111 12345678999998742 222 2344444322 11 2357799999643 233
Q ss_pred HHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH-HHH
Q 004746 613 RVMQELSSIGLMPEDWGGDIPMVQISALKGEKV-DDL 648 (732)
Q Consensus 613 rv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI-deL 648 (732)
.+.......+ .|+.+++ +|++| ++|
T Consensus 341 ~iL~i~~~~~---------lPI~yit--~GQ~VPdDL 366 (767)
T PRK14723 341 PALDTVIRHR---------LPVHYVS--TGQKVPEHL 366 (767)
T ss_pred HHHHHHHHHC---------CCeEEEe--cCCCChhhc
Confidence 4444444433 3555554 67777 443
No 408
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.00 E-value=0.00049 Score=76.34 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=49.3
Q ss_pred hhhhcccCCCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 482 EDLDKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 482 ~~~~~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
+-......+.++|.|+|-||+|||||||+|...+. .++..+|+|+.+ -++.++. .|.|+|.||.
T Consensus 243 y~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~sm----qeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 243 YCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSM----QEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred cccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhh----hheeccC---CceeccCCce
Confidence 33344567788999999999999999999997765 488889999865 2222333 5999999994
No 409
>PRK10867 signal recognition particle protein; Provisional
Probab=96.99 E-value=0.006 Score=69.26 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=36.2
Q ss_pred ceeEEEEeCCCccccchh----hcc--cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCC
Q 004746 541 LQPCVFLDTPGHEAFGAM----RAR--GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKD 607 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~----r~r--~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~ 607 (732)
.+.+.|+||||.-.+... ... .+-..|.++||+|+..+ ....+.+..+.. .++ .-+++||+|-.
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCc
Confidence 467999999994332111 111 11356788999998642 223333333322 233 35778999963
No 410
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0036 Score=70.41 Aligned_cols=145 Identities=18% Similarity=0.248 Sum_probs=75.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC------Ccc--cccc---CCc--------eeeeeeEEEEee---------cC-C
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVA--AAEA---GGI--------TQGIGAYKVQVP---------VD-G 539 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~------k~~--vse~---~Gt--------TrdI~~y~v~i~---------id-g 539 (732)
.++.+|+|+|..|+||||++..|... ++. ..+. +.. ..++.++...-. +. .
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 45678999999999999999988521 111 0000 000 011111111000 00 1
Q ss_pred cceeEEEEeCCCccccchh----hcccc--cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHH
Q 004746 540 KLQPCVFLDTPGHEAFGAM----RARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER 613 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~----r~r~~--~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~er 613 (732)
.++.+.||||||....... ....+ ...|.++||+|++-.- ....+++..+...++ -=++++|+|-.. ..-.
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~i-dglI~TKLDET~-k~G~ 395 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHI-DGIVFTKFDETA-SSGE 395 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCCC-CEEEEEcccCCC-CccH
Confidence 1368999999995332211 11222 3457889999876321 222455555544322 357899999643 2333
Q ss_pred HHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 614 v~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
+.......+ .|+.+++ +|++|.+
T Consensus 396 iLni~~~~~---------lPIsyit--~GQ~VPe 418 (436)
T PRK11889 396 LLKIPAVSS---------APIVLMT--DGQDVKK 418 (436)
T ss_pred HHHHHHHHC---------cCEEEEe--CCCCCCc
Confidence 444444433 3454443 5666654
No 411
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.0016 Score=73.42 Aligned_cols=148 Identities=18% Similarity=0.226 Sum_probs=75.7
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccc---cccCCceee------------------eeeEEEEee-------cC
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA---AEAGGITQG------------------IGAYKVQVP-------VD 538 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~v---se~~GtTrd------------------I~~y~v~i~-------id 538 (732)
+...+-+|+|+|..|+||||++..|....... ....-++.| +..+.+.-. ..
T Consensus 187 ~~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~ 266 (420)
T PRK14721 187 IIEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE 266 (420)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH
Confidence 44567899999999999999999775421000 000000100 000000000 01
Q ss_pred CcceeEEEEeCCCccccch----hhcc--cccccCeEEEEEEecCCCChhh-HHHHHHHHhcCCCEEEEEeCCCCCCCCh
Q 004746 539 GKLQPCVFLDTPGHEAFGA----MRAR--GARVTDIAVIVVAADDGIRPQT-NEAIAHAKAAGVPIVIAINKIDKDGANP 611 (732)
Q Consensus 539 gk~i~ItLIDTPGhE~f~~----~r~r--~~~~ADiVILVVDasdgi~~qt-~EiL~~ak~~~vPIIVViNKiDL~~a~~ 611 (732)
-.++.+.|+||+|...... .... .....+-.+||+|++.. .++ .+++..+...++ -=+++||.|-.. ..
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~~-~~~I~TKlDEt~-~~ 342 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHGI-HGCIITKVDEAA-SL 342 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCCC-CEEEEEeeeCCC-Cc
Confidence 1345789999999433211 1111 11234567899988742 222 334444433222 357899999643 33
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH-HHHH
Q 004746 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV-DDLL 649 (732)
Q Consensus 612 erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI-deLf 649 (732)
-.+...+...+ .|+.+++ +|++| ++|.
T Consensus 343 G~~l~~~~~~~---------lPi~yvt--~Gq~VP~Dl~ 370 (420)
T PRK14721 343 GIALDAVIRRK---------LVLHYVT--NGQKVPEDLH 370 (420)
T ss_pred cHHHHHHHHhC---------CCEEEEE--CCCCchhhhh
Confidence 34444444433 3555544 67777 4443
No 412
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.0048 Score=69.12 Aligned_cols=147 Identities=15% Similarity=0.160 Sum_probs=75.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC----------Cccc--ccc--CC---------ceeeeeeEEEEee-------cC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT----------KVAA--AEA--GG---------ITQGIGAYKVQVP-------VD 538 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~----------k~~v--se~--~G---------tTrdI~~y~v~i~-------id 538 (732)
..+..|+++|+.|+||||.+..|... ++.. .+. .+ .-.++.+...... -.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 34668999999999999999877521 1110 000 00 0011111111110 01
Q ss_pred CcceeEEEEeCCCccccchh----hccccc--ccC-eEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCCh
Q 004746 539 GKLQPCVFLDTPGHEAFGAM----RARGAR--VTD-IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP 611 (732)
Q Consensus 539 gk~i~ItLIDTPGhE~f~~~----r~r~~~--~AD-iVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~ 611 (732)
...+.+.|+||+|.-....+ ....+. ..+ -++||+|++.+. ....+++..+...+ +-=+++||.|-.. ..
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~-~~~~~~~~~~~~~~-~~~~I~TKlDet~-~~ 328 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT-SDVKEIFHQFSPFS-YKTVIFTKLDETT-CV 328 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH-HHHHHHHHHhcCCC-CCEEEEEeccCCC-cc
Confidence 24578999999995432221 112222 123 588999998652 22223444433222 2467899999632 23
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH-HHHH
Q 004746 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV-DDLL 649 (732)
Q Consensus 612 erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI-deLf 649 (732)
-.+...+...+ .|+.+++ +|++| ++|.
T Consensus 329 G~~l~~~~~~~---------~Pi~yit--~Gq~vPeDl~ 356 (388)
T PRK12723 329 GNLISLIYEMR---------KEVSYVT--DGQIVPHNIS 356 (388)
T ss_pred hHHHHHHHHHC---------CCEEEEe--CCCCChhhhh
Confidence 33444444433 3454443 67888 5543
No 413
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.95 E-value=0.01 Score=64.74 Aligned_cols=129 Identities=22% Similarity=0.222 Sum_probs=70.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCC----cc--ccccCCceeee------eeEEEEee-------cCC-----------
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTK----VA--AAEAGGITQGI------GAYKVQVP-------VDG----------- 539 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k----~~--vse~~GtTrdI------~~y~v~i~-------idg----------- 539 (732)
+.|..+|.|.-|+|||||||+|+... +. ..+.+.+..|- ....+++. ..+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 45788999999999999999998431 11 12222111110 00011110 000
Q ss_pred ------cceeEEEEeCCCccccchhhccc--------ccccCeEEEEEEecCCCCh--hhHHHHHHHHhcCCCEEEEEeC
Q 004746 540 ------KLQPCVFLDTPGHEAFGAMRARG--------ARVTDIAVIVVAADDGIRP--QTNEAIAHAKAAGVPIVIAINK 603 (732)
Q Consensus 540 ------k~i~ItLIDTPGhE~f~~~r~r~--------~~~ADiVILVVDasdgi~~--qt~EiL~~ak~~~vPIIVViNK 603 (732)
......||.|.|..+-....... .-..|.+|.|+|+.+.... .......++..++ +|++||
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD---~IvlnK 159 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD---RILLTK 159 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCC---EEEEec
Confidence 12567899999964433222111 1235889999999863211 1122334444333 899999
Q ss_pred CCCCCCChHHHHHHHHHcC
Q 004746 604 IDKDGANPERVMQELSSIG 622 (732)
Q Consensus 604 iDL~~a~~erv~~eL~elg 622 (732)
+|+... .+++...+..++
T Consensus 160 ~Dl~~~-~~~~~~~l~~ln 177 (318)
T PRK11537 160 TDVAGE-AEKLRERLARIN 177 (318)
T ss_pred cccCCH-HHHHHHHHHHhC
Confidence 999753 355556665543
No 414
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.95 E-value=0.00071 Score=77.34 Aligned_cols=147 Identities=22% Similarity=0.278 Sum_probs=101.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
.++.|+|...+|||+|+.+++...+...+.+. -+-|..++..++..+.+.+.|..|+.. ..+....|++||
T Consensus 31 lk~givg~~~sgktalvhr~ltgty~~~e~~e----~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 31 LKLGIVGTSQSGKTALVHRYLTGTYTQDESPE----GGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred hheeeeecccCCceeeeeeeccceeccccCCc----CccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 58999999999999999999977766443321 123456666788888899999988543 345578899999
Q ss_pred EEEecCCCChhhHHHHHHHH-----hcCCCEEEEEeCCCCC----CC-ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 572 VVAADDGIRPQTNEAIAHAK-----AAGVPIVIAINKIDKD----GA-NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 572 VVDasdgi~~qt~EiL~~ak-----~~~vPIIVViNKiDL~----~a-~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
||...+..+++..+.+.+.. ...+|+++++++-=.. .. ...+....+..+ ..+.+|+.+|.+
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~--------krcsy~et~aty 173 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQM--------KRCSYYETCATY 173 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhc--------Cccceeecchhh
Confidence 99999888888776654432 2346677777763221 11 112222222222 136799999999
Q ss_pred CCCHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLV 655 (732)
Q Consensus 642 GeGIdeLfe~Ii~l 655 (732)
|.+++..|..+...
T Consensus 174 Glnv~rvf~~~~~k 187 (749)
T KOG0705|consen 174 GLNVERVFQEVAQK 187 (749)
T ss_pred hhhHHHHHHHHHHH
Confidence 99999999887643
No 415
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=96.95 E-value=0.00027 Score=57.38 Aligned_cols=51 Identities=25% Similarity=0.489 Sum_probs=40.4
Q ss_pred ccchHHHHHHHhcCCHHHHHHHHHh-CCCc-ccccccCCHHHHHHhhhhcCCe
Q 004746 410 KGMLIEELARNLAIGEGEILGSLYS-KGIK-PEGVQTLDKDMVKMICKDYEVE 460 (732)
Q Consensus 410 ~~iav~qLag~Ls~~i~eiik~L~~-lG~~-~~in~~Ld~e~ie~ia~e~~~~ 460 (732)
+.++|.+||..|+....+|++.|+. +|++ .+.++.||+++++.++++|+++
T Consensus 2 ~~i~V~elAk~l~v~~~~ii~~l~~~~Gi~~~~~~~~ld~e~~~~i~~~~~~k 54 (54)
T PF04760_consen 2 EKIRVSELAKELGVPSKEIIKKLFKELGIMVKSINSSLDEEEAELIAEEFGVK 54 (54)
T ss_dssp -EE-TTHHHHHHSSSHHHHHHHH-HHHTS---SSSS-EETTGGGHHHHHH---
T ss_pred CceEHHHHHHHHCcCHHHHHHHHHHhCCcCcCCCCCcCCHHHHHHHHHHhCcC
Confidence 4689999999999999999999977 9999 8999999999999999998763
No 416
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.91 E-value=0.0065 Score=68.75 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=51.0
Q ss_pred ceeEEEEeCCCccccch----hhccccc---ccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHH
Q 004746 541 LQPCVFLDTPGHEAFGA----MRARGAR---VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER 613 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~----~r~r~~~---~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~er 613 (732)
.+.+.||||||...+.. .....+. ..+-++||++++.+ .....+++..+...++ -=+++||+|-.. ..-.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~-~~~l~~~~~~f~~~~~-~~vI~TKlDet~-~~G~ 375 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK-YEDLKDIYKHFSRLPL-DGLIFTKLDETS-SLGS 375 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC-HHHHHHHHHHhCCCCC-CEEEEecccccc-cccH
Confidence 46899999999643321 1111112 23466788887632 1223344444443332 358899999732 3334
Q ss_pred HHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH-HHH
Q 004746 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKV-DDL 648 (732)
Q Consensus 614 v~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI-deL 648 (732)
+...+...+ .|+.+++ +|++| ++|
T Consensus 376 i~~~~~~~~---------lPv~yit--~Gq~VpdDl 400 (424)
T PRK05703 376 ILSLLIESG---------LPISYLT--NGQRVPDDI 400 (424)
T ss_pred HHHHHHHHC---------CCEEEEe--CCCCChhhh
Confidence 555555544 3454444 67776 444
No 417
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.016 Score=57.94 Aligned_cols=142 Identities=21% Similarity=0.299 Sum_probs=80.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCC-Cc--------------cc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTP-GH--------------EA 554 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTP-Gh--------------E~ 554 (732)
...+|.|.|.||+|||||+..+...-.. .|.+. .+++..++.-+++-.-|.++|+. |. -.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~----~g~kv-gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGk 78 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLRE----KGYKV-GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGK 78 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHh----cCcee-eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccce
Confidence 4578999999999999999887632110 01111 13444555556666667777777 31 11
Q ss_pred cc-----------hhhcccccccCeEEEEEEecCC---CChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHH
Q 004746 555 FG-----------AMRARGARVTDIAVIVVAADDG---IRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS 620 (732)
Q Consensus 555 f~-----------~~r~r~~~~ADiVILVVDasdg---i~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~e 620 (732)
|. ....+.+..||++| +|=--. ......+.+..+...+.|+|.++-+-+. +-+.+.+..
T Consensus 79 Y~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr-----~P~v~~ik~ 151 (179)
T COG1618 79 YGVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR-----HPLVQRIKK 151 (179)
T ss_pred EEeeHHHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC-----ChHHHHhhh
Confidence 11 11223445567665 442211 1233455666666678898888887654 234444444
Q ss_pred cCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 621 IGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 621 lgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
.+- + ++. .+-+|-+.++..|+..
T Consensus 152 ~~~--------v-~v~---lt~~NR~~i~~~Il~~ 174 (179)
T COG1618 152 LGG--------V-YVF---LTPENRNRILNEILSV 174 (179)
T ss_pred cCC--------E-EEE---EccchhhHHHHHHHHH
Confidence 321 1 222 5777777888877754
No 418
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.88 E-value=0.0014 Score=70.97 Aligned_cols=61 Identities=21% Similarity=0.452 Sum_probs=44.6
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC-----C-ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT-----K-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~-----k-~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
..-.+.|.|+|-||+|||||+|+++.. + ..++..+|+|+.+... +.+ .. .-.+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri--~~-rp~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRI--SH-RPPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEe--cc-CCceEEecCCCc
Confidence 335689999999999999999998632 2 3377889999987431 222 11 235999999993
No 419
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=96.87 E-value=0.0053 Score=50.50 Aligned_cols=62 Identities=39% Similarity=0.413 Sum_probs=52.0
Q ss_pred cceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC----eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE----AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 670 ~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~----~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
...+++++.+.+.|.++.++|.+|+|+.||.+.+.. ...+|++|+..+ ..++++.+|+.+.+
T Consensus 2 ~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~-~~~~~~~aG~~~~~ 67 (83)
T cd01342 2 RALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK-GEVDEAVAGDIVGI 67 (83)
T ss_pred eeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecC-ceeceecCCCEEEE
Confidence 356777888888999999999999999999998854 357899998775 78999999998753
No 420
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.83 E-value=0.0033 Score=65.98 Aligned_cols=63 Identities=25% Similarity=0.374 Sum_probs=45.9
Q ss_pred eeEEEEeC-CCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcC-CCEEEEEeCCCCC
Q 004746 542 QPCVFLDT-PGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAG-VPIVIAINKIDKD 607 (732)
Q Consensus 542 i~ItLIDT-PGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~-vPIIVViNKiDL~ 607 (732)
+.+.++|| +|.|.|+. ...+.+|++|+|+|.+-........+-+.....+ .++.+|+||+|-.
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 45788887 46676653 3347899999999988644444455556666778 7799999999953
No 421
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=0.0012 Score=70.38 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=70.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceee--eeeEEEEeecCCcceeEEEEeCCCc----------------
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQG--IGAYKVQVPVDGKLQPCVFLDTPGH---------------- 552 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrd--I~~y~v~i~idgk~i~ItLIDTPGh---------------- 552 (732)
.++|..+|..|-|||||++.|.+..+...+....-.. +.....++.-.+-..+++++||.|.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 4689999999999999999999888765443322111 1122222222344567999999992
Q ss_pred -----cccc-----hhhc-ccc--cccCeEEEEEEecC-CCChhhHHHHHHHHhcCCCEEEEEeCCCCCC
Q 004746 553 -----EAFG-----AMRA-RGA--RVTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVPIVIAINKIDKDG 608 (732)
Q Consensus 553 -----E~f~-----~~r~-r~~--~~ADiVILVVDasd-gi~~qt~EiL~~ak~~~vPIIVViNKiDL~~ 608 (732)
|.|. ..+. ..+ ...++|++.|..+- ++...+.-.+..+. ..+.||-++-|.|...
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHHHHhhhhh
Confidence 1111 1111 112 45688999887763 33333333333332 3577899999999643
No 422
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.76 E-value=0.01 Score=64.99 Aligned_cols=148 Identities=25% Similarity=0.263 Sum_probs=82.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCc----c--ccccCCceeee-e------eEEEEee-------c-------------C
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKV----A--AAEAGGITQGI-G------AYKVQVP-------V-------------D 538 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~----~--vse~~GtTrdI-~------~y~v~i~-------i-------------d 538 (732)
|..+|-|--|+||||||+.|+.+.. + +.+.+-+-+|- . ...+++. + .
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 5678899999999999999985432 2 33433333331 0 0011110 0 0
Q ss_pred CcceeEEEEeCCCccc-------cchh-hcccccccCeEEEEEEecCCCChhh---HHHHHHHHhcCCCEEEEEeCCCCC
Q 004746 539 GKLQPCVFLDTPGHEA-------FGAM-RARGARVTDIAVIVVAADDGIRPQT---NEAIAHAKAAGVPIVIAINKIDKD 607 (732)
Q Consensus 539 gk~i~ItLIDTPGhE~-------f~~~-r~r~~~~ADiVILVVDasdgi~~qt---~EiL~~ak~~~vPIIVViNKiDL~ 607 (732)
.......+|.|.|... |... -....-..|.+|-|+|+........ .....++..++ +|++||+|+.
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD---~ivlNK~Dlv 158 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD---VIVLNKTDLV 158 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc---EEEEecccCC
Confidence 1236678999999422 2111 1112234588999999987443322 23334444333 8999999997
Q ss_pred CCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHH
Q 004746 608 GANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLE 650 (732)
Q Consensus 608 ~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe 650 (732)
+... +.....+..++ ...+++.+|. .+....+++.
T Consensus 159 ~~~~l~~l~~~l~~ln-------p~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 159 DAEELEALEARLRKLN-------PRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred CHHHHHHHHHHHHHhC-------CCCeEEEccc-cCCCHHHhhc
Confidence 6442 23334444433 3467888777 4444444443
No 423
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=96.71 E-value=0.0087 Score=56.21 Aligned_cols=66 Identities=32% Similarity=0.304 Sum_probs=52.4
Q ss_pred CCCccceEEEEeec--------cCCCceEEEEEEeeEEecCCEEEE--c------------CeeEEEEEEEcCCCCccce
Q 004746 666 HRNAKGTVIEAGLH--------KSKGPVATFILQNGTLKKGDVVVC--G------------EAFGKVRALFDDSGNRVDE 723 (732)
Q Consensus 666 ~r~a~g~Vies~~d--------kgrG~VatglV~~GtLk~GD~Iv~--G------------~~~gkVrsI~~~~g~~V~~ 723 (732)
+.++.-+|++++-. ..+|.|+.|.+.+|.|++||.|.+ | +.+.+|.+|+.+ ++.+++
T Consensus 3 ~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~-~~~l~~ 81 (113)
T cd03688 3 TSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAE-NNDLQE 81 (113)
T ss_pred CCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEec-CccccE
Confidence 34455566666644 489999999999999999999855 1 246789999988 589999
Q ss_pred ecCCCCeeC
Q 004746 724 AGPSIPVQV 732 (732)
Q Consensus 724 A~pG~~V~I 732 (732)
|.||..|.|
T Consensus 82 a~pGgliGv 90 (113)
T cd03688 82 AVPGGLIGV 90 (113)
T ss_pred EeCCCeEEE
Confidence 999988754
No 424
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.61 E-value=0.005 Score=61.32 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=33.3
Q ss_pred CeEEEEEEecCCCChhhHHHHHH--HHhcCCCEEEEEeCCCCC
Q 004746 567 DIAVIVVAADDGIRPQTNEAIAH--AKAAGVPIVIAINKIDKD 607 (732)
Q Consensus 567 DiVILVVDasdgi~~qt~EiL~~--ak~~~vPIIVViNKiDL~ 607 (732)
|++++|+|+.+.+.....++.+. ++..+.|+|+|+||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 89999999998777666666666 444578999999999994
No 425
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=96.60 E-value=0.0077 Score=52.54 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=49.3
Q ss_pred cceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeE---EEEEEEcCCCCccceecCCCCeeC
Q 004746 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFG---KVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 670 ~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~g---kVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
.+.|+++..++..|.++.++|.+|+|+.||.+.+-. ... ++..+......++++|.+|+.|.|
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i 69 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVI 69 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEE
Confidence 467899999999999999999999999999997632 123 445554444567999999998753
No 426
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=96.59 E-value=0.0082 Score=53.00 Aligned_cols=66 Identities=20% Similarity=0.109 Sum_probs=51.5
Q ss_pred CCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC-eeEEEEEEEc---CCCCccceecCCCCeeC
Q 004746 667 RNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE-AFGKVRALFD---DSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 667 r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~-~~gkVrsI~~---~~g~~V~~A~pG~~V~I 732 (732)
.++.+.|+....++..|.++.++|.+|+|+.||.+..-. ...+|..|+. ..-..+++|.+|+.+.|
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai 71 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNREEKIKITELRVFNNGEVVTADTVTAGDIAIL 71 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCCCcEEEeceeEEEeCCCeEECcEECCCCEEEE
Confidence 467789999999999999999999999999999997632 2234445544 33456899999998754
No 427
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=96.59 E-value=0.0078 Score=52.27 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=48.8
Q ss_pred cceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEE---EEcCCCCccceecCCCCeeC
Q 004746 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRA---LFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 670 ~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrs---I~~~~g~~V~~A~pG~~V~I 732 (732)
.+.|+.+..++..|.++.++|.+|+|++||.+.... ...+|.. +....-..+++|.+|+.+.|
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i 69 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAV 69 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEE
Confidence 467888999999999999999999999999997632 1234444 44444467899999998754
No 428
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.59 E-value=0.0078 Score=58.93 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=57.1
Q ss_pred cceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHH
Q 004746 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELS 619 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~ 619 (732)
..+.+.|+|||+.... .....+..+|.+|+++..+..........++.++..+.++.+|+||+|.......+..+.+.
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~~~~~~~~~~~ 168 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDEIAEEIEDYCE 168 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHH
Confidence 4568999999975322 22344578999999998876555556677777777788999999999975444444555555
Q ss_pred HcC
Q 004746 620 SIG 622 (732)
Q Consensus 620 elg 622 (732)
+.+
T Consensus 169 ~~~ 171 (179)
T cd03110 169 EEG 171 (179)
T ss_pred HcC
Confidence 443
No 429
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=96.58 E-value=0.012 Score=51.89 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=49.9
Q ss_pred eEEEEeeccCCCceEEEEEEeeEEecCCEEEE--cC---eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 672 TVIEAGLHKSKGPVATFILQNGTLKKGDVVVC--GE---AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 672 ~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~--G~---~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
.|.+++...+.|.++.++|.+|+|++|+.+.+ +. ..++|.+|..+ .+.+++|.+|+.+.|
T Consensus 4 ~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~-~~~v~~a~~G~ecgi 68 (84)
T cd03692 4 EVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRF-KDDVKEVKKGYECGI 68 (84)
T ss_pred EEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEc-CcccCEECCCCEEEE
Confidence 44555545567899999999999999999988 44 67899999988 589999999998754
No 430
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=96.56 E-value=0.01 Score=51.93 Aligned_cols=63 Identities=22% Similarity=0.143 Sum_probs=48.6
Q ss_pred cceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcCe-----eEEEEEE---EcCCCCccceecCCCCeeC
Q 004746 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA-----FGKVRAL---FDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 670 ~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~-----~gkVrsI---~~~~g~~V~~A~pG~~V~I 732 (732)
...|+.+..++..|.++.++|.+|+|++||.|.+... ..+|..| ...+-.++++|.+|+.+.|
T Consensus 2 ~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i 72 (86)
T cd03691 2 QMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAI 72 (86)
T ss_pred eEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEE
Confidence 4678999999999999999999999999999976221 2345555 4333456899999997753
No 431
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.55 E-value=0.0041 Score=61.68 Aligned_cols=127 Identities=26% Similarity=0.308 Sum_probs=65.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc-----CCcc--ccccCCceeee------eeEEEEee-------------------cCC
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK-----TKVA--AAEAGGITQGI------GAYKVQVP-------------------VDG 539 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~-----~k~~--vse~~GtTrdI------~~y~v~i~-------------------idg 539 (732)
|.++|.|..|+||||||++|+. .+.. ..+.+.+..|- +...+++. ...
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 5689999999999999999983 1211 12222111100 00111111 011
Q ss_pred c--ceeEEEEeCCCccccchh--hccc---ccccCeEEEEEEecCCCCh--hhHHHHHHHHhcCCCEEEEEeCCCCCCCC
Q 004746 540 K--LQPCVFLDTPGHEAFGAM--RARG---ARVTDIAVIVVAADDGIRP--QTNEAIAHAKAAGVPIVIAINKIDKDGAN 610 (732)
Q Consensus 540 k--~i~ItLIDTPGhE~f~~~--r~r~---~~~ADiVILVVDasdgi~~--qt~EiL~~ak~~~vPIIVViNKiDL~~a~ 610 (732)
. ...+.|+.+.|......+ .... .-..+.+|.|+|+..-... ....+..++..++ ++++||+|+....
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD---vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD---VIVLNKIDLVSDE 157 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S---EEEEE-GGGHHHH
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC---EEEEeccccCChh
Confidence 2 357889999995443333 1111 1345889999999542111 1122334443333 8999999985432
Q ss_pred --hHHHHHHHHHc
Q 004746 611 --PERVMQELSSI 621 (732)
Q Consensus 611 --~erv~~eL~el 621 (732)
.+++.+.+.++
T Consensus 158 ~~i~~~~~~ir~l 170 (178)
T PF02492_consen 158 QKIERVREMIREL 170 (178)
T ss_dssp --HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 24444455444
No 432
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.48 E-value=0.013 Score=66.19 Aligned_cols=156 Identities=20% Similarity=0.263 Sum_probs=86.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCcc----------------ccccCCceeeee---e---EEEEeec-CCcceeEEEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA----------------AAEAGGITQGIG---A---YKVQVPV-DGKLQPCVFL 547 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~----------------vse~~GtTrdI~---~---y~v~i~i-dgk~i~ItLI 547 (732)
-+-|.++|++-+|||||+.+|...-+. .....|.|+... | ..+++.+ ++-.+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 357999999999999999998532111 112223332211 0 1123333 4567889999
Q ss_pred eCCCc--------cccchh---------------------hcccc-c-ccCeEEEEEEecCC-C-----ChhhHHHHHHH
Q 004746 548 DTPGH--------EAFGAM---------------------RARGA-R-VTDIAVIVVAADDG-I-----RPQTNEAIAHA 590 (732)
Q Consensus 548 DTPGh--------E~f~~~---------------------r~r~~-~-~ADiVILVVDasdg-i-----~~qt~EiL~~a 590 (732)
|+-|. ++-... +..-+ . .+=++++--|.+-+ + .......++.+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 99982 111000 00111 1 12233333444421 1 22234577888
Q ss_pred HhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC--CCCHHHHHHHHHH
Q 004746 591 KAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK--GEKVDDLLETIML 654 (732)
Q Consensus 591 k~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt--GeGIdeLfe~Ii~ 654 (732)
+..++|+||++|=.+=.......+..+|.+.. +++++++++.. -+.|..+++.++-
T Consensus 177 k~igKPFvillNs~~P~s~et~~L~~eL~ekY--------~vpVlpvnc~~l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 177 KEIGKPFVILLNSTKPYSEETQELAEELEEKY--------DVPVLPVNCEQLREEDITRILEEVLY 234 (492)
T ss_pred HHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHh--------CCcEEEeehHHcCHHHHHHHHHHHHh
Confidence 99999999999998754334444555555421 46777777543 4456666666543
No 433
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.0068 Score=68.55 Aligned_cols=144 Identities=15% Similarity=0.150 Sum_probs=73.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCC-------cc--ccccCC-----------ceeeeeeEEEE------eecCCccee
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTK-------VA--AAEAGG-----------ITQGIGAYKVQ------VPVDGKLQP 543 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k-------~~--vse~~G-----------tTrdI~~y~v~------i~idgk~i~ 543 (732)
++..|+|+|.+|+||||++..|.... +. ..+... -..++.++... -.+...++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 45579999999999999999886321 11 000000 00011111110 001123567
Q ss_pred EEEEeCCCccccch----hhccccc-----ccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHH
Q 004746 544 CVFLDTPGHEAFGA----MRARGAR-----VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERV 614 (732)
Q Consensus 544 ItLIDTPGhE~f~~----~r~r~~~-----~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv 614 (732)
+.||||||...... .+...+. ...-++||+|++.+. ....+++......++ -=++++|.|-. ...-.+
T Consensus 302 ~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~-~~~~~~~~~f~~~~~-~glIlTKLDEt-~~~G~i 378 (432)
T PRK12724 302 LILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-HHTLTVLKAYESLNY-RRILLTKLDEA-DFLGSF 378 (432)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH-HHHHHHHHHhcCCCC-CEEEEEcccCC-CCccHH
Confidence 89999999543211 1111111 234688999988542 223344444433332 35789999964 233344
Q ss_pred HHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 615 MQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 615 ~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
.......+ .|+.+++ +|++|-+
T Consensus 379 l~i~~~~~---------lPI~ylt--~GQ~VPe 400 (432)
T PRK12724 379 LELADTYS---------KSFTYLS--VGQEVPF 400 (432)
T ss_pred HHHHHHHC---------CCEEEEe--cCCCCCC
Confidence 44444433 3455544 4666543
No 434
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.46 E-value=0.023 Score=54.84 Aligned_cols=75 Identities=12% Similarity=0.209 Sum_probs=49.0
Q ss_pred eEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCChHHHHHHHH
Q 004746 543 PCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPERVMQELS 619 (732)
Q Consensus 543 ~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~~erv~~eL~ 619 (732)
.+.|+|||+.... .....+..+|.+|++++.+..........++.++..+.+ +.+++|++|.......+....+.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~ 139 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIE 139 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHH
Confidence 6999999985332 233446789999999988765545555556666555555 67999999875433333333333
No 435
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=96.44 E-value=0.012 Score=52.28 Aligned_cols=63 Identities=22% Similarity=0.360 Sum_probs=50.6
Q ss_pred CCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcCeeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 667 RNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 667 r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+++...|+.-+.-..+. ++.|.|..|+|++|..| =|..-|+|++|+++ ++.+++|.+|+.|.|
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l-~G~~iG~I~sIe~~-~k~v~~A~~G~eVai 65 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL-DGRKIGRIKSIEDN-GKNVDEAKKGDEVAI 65 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE-CSSCEEEEEEEEET-TEEESEEETT-EEEE
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc-CCEEEEEEEEeEEC-CcCccccCCCCEEEE
Confidence 35566677666667778 77779999999999999 77788999999988 699999999999864
No 436
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.36 E-value=0.007 Score=66.29 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=21.2
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHH
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl 512 (732)
..++..|+|+|-.|+||||-|..|.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA 160 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLA 160 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHH
Confidence 3568899999999999999887664
No 437
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=96.35 E-value=0.014 Score=51.63 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=47.8
Q ss_pred ceEEEEee---ccCCCceEEEEEEeeEEecCCEEEEcC--eeE---EEEEEEcCCCCccceecCCCCeeC
Q 004746 671 GTVIEAGL---HKSKGPVATFILQNGTLKKGDVVVCGE--AFG---KVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 671 g~Vies~~---dkgrG~VatglV~~GtLk~GD~Iv~G~--~~g---kVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
++|+.+.. ++..|.+++++|.+|+|+.||.|.... ... ++..++......+++|.+|+.|.|
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v 70 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGL 70 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEE
Confidence 35777777 889999999999999999999997632 123 455555555567999999998753
No 438
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.34 E-value=0.0018 Score=71.92 Aligned_cols=58 Identities=22% Similarity=0.411 Sum_probs=43.9
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
.+..+-|.|||-||+||||+||.|+..++. +..++|-|.--.+.. + -..|.|||+||.
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt--L-----mkrIfLIDcPGv 362 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT--L-----MKRIFLIDCPGV 362 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH--H-----HhceeEecCCCc
Confidence 456788999999999999999999988766 677888774321111 1 126899999994
No 439
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.33 E-value=0.022 Score=63.33 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=49.4
Q ss_pred cceeEEEEeCCCccccchhhcccccccCeEEEEEEecC--------CCChhhHHHHHHHHh-------cCCCEEEEEeCC
Q 004746 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD--------GIRPQTNEAIAHAKA-------AGVPIVIAINKI 604 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasd--------gi~~qt~EiL~~ak~-------~~vPIIVViNKi 604 (732)
....+.|+|+.|+..-..-|..++..+++||||++.++ .......+.+..... .+.|+||++||+
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 45789999999998888888899999999999999885 111222333333221 368999999999
Q ss_pred CC
Q 004746 605 DK 606 (732)
Q Consensus 605 DL 606 (732)
|+
T Consensus 314 D~ 315 (389)
T PF00503_consen 314 DL 315 (389)
T ss_dssp HH
T ss_pred HH
Confidence 96
No 440
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.021 Score=60.27 Aligned_cols=149 Identities=17% Similarity=0.236 Sum_probs=85.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcc-----ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhh---cccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-----AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMR---ARGA 563 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~-----vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r---~r~~ 563 (732)
++|.+||+.-+||||+.....+.... ......+|++- +...-+.+.+||.||+-.|..-. ...+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~--------is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF 99 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDH--------ISNSFINFQVWDFPGQMDFFDPSFDYEMIF 99 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhh--------hhhhhcceEEeecCCccccCCCccCHHHHH
Confidence 66999999999999998776643221 12222333331 12234578999999986654322 2335
Q ss_pred cccCeEEEEEEecCCCChhhHH-HHHHHHh----cCCCEEEEEeCCCCCCCC---------hHHHHHHHHHcCCCCCCCC
Q 004746 564 RVTDIAVIVVAADDGIRPQTNE-AIAHAKA----AGVPIVIAINKIDKDGAN---------PERVMQELSSIGLMPEDWG 629 (732)
Q Consensus 564 ~~ADiVILVVDasdgi~~qt~E-iL~~ak~----~~vPIIVViNKiDL~~a~---------~erv~~eL~elgl~~e~~g 629 (732)
+.+.+.|+|+|+.+..+..... ++...+. .++.+=|.+-|.|-...+ .++...++...++..-
T Consensus 100 ~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v--- 176 (347)
T KOG3887|consen 100 RGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKV--- 176 (347)
T ss_pred hccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccc---
Confidence 8889999999997643332211 1112222 245688999999953211 1233344555554322
Q ss_pred CCCCEEEEecCCCCCHHHHHHHHH
Q 004746 630 GDIPMVQISALKGEKVDDLLETIM 653 (732)
Q Consensus 630 g~ipiVeVSAKtGeGIdeLfe~Ii 653 (732)
.+.|+.+|-.. ..|-|.|..+.
T Consensus 177 -~vsf~LTSIyD-HSIfEAFSkvV 198 (347)
T KOG3887|consen 177 -QVSFYLTSIYD-HSIFEAFSKVV 198 (347)
T ss_pred -eEEEEEeeecc-hHHHHHHHHHH
Confidence 24566666554 45555555443
No 441
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=96.30 E-value=0.016 Score=50.48 Aligned_cols=61 Identities=23% Similarity=0.265 Sum_probs=46.5
Q ss_pred cceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEE---EcCCCCccceecCCCCee
Q 004746 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRAL---FDDSGNRVDEAGPSIPVQ 731 (732)
Q Consensus 670 ~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI---~~~~g~~V~~A~pG~~V~ 731 (732)
.+.++....++. |.++.++|.+|+|++||.|.... ...+|..| ....-.++++|.+|+.+.
T Consensus 2 ~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~ 67 (81)
T cd04091 2 VGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICA 67 (81)
T ss_pred eEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEE
Confidence 467888888866 99999999999999999997732 22344444 434345799999999765
No 442
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=96.28 E-value=0.018 Score=50.74 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=47.7
Q ss_pred cceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEE--cCCCCccceecCCCCeeC
Q 004746 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALF--DDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 670 ~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~--~~~g~~V~~A~pG~~V~I 732 (732)
.+.|+.+..++..|.++.++|.+|+|+.||.+.... ...+|..|+ .....++++|.+|+.+.|
T Consensus 2 ~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v 68 (86)
T cd03699 2 RALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYI 68 (86)
T ss_pred EEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEE
Confidence 467899999999999999999999999999997632 123333333 333467899999998753
No 443
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.0072 Score=75.45 Aligned_cols=106 Identities=23% Similarity=0.270 Sum_probs=62.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccc--------cccCCceeeeeeEEEEeecCCcceeEEEEeCCC----cc----cc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAA--------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----HE----AF 555 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~v--------se~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG----hE----~f 555 (732)
|=-+|||++|+||||++...-. +|.. ....| |++.+.+ +.. .-.+|||+| |+ .-
T Consensus 126 PWy~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~g-T~~cdww-----f~d---eaVlIDtaGry~~q~s~~~~~ 195 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPG-TRNCDWW-----FTD---EAVLIDTAGRYITQDSADEVD 195 (1188)
T ss_pred CceEEecCCCCCcchHHhcccc-cCcchhhhccccccCCC-CcccCcc-----ccc---ceEEEcCCcceecccCcchhh
Confidence 4478999999999999865321 1111 11222 4443211 222 478999999 21 11
Q ss_pred chhh---------cccccccCeEEEEEEecCCCChhhHHHHHHH-------------HhcCCCEEEEEeCCCCC
Q 004746 556 GAMR---------ARGARVTDIAVIVVAADDGIRPQTNEAIAHA-------------KAAGVPIVIAINKIDKD 607 (732)
Q Consensus 556 ~~~r---------~r~~~~ADiVILVVDasdgi~~qt~EiL~~a-------------k~~~vPIIVViNKiDL~ 607 (732)
...| .+..+-.|+||+.+|+.+-......+...++ -....|+.|++||+|+.
T Consensus 196 ~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 196 RAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLL 269 (1188)
T ss_pred HHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccc
Confidence 1112 2334668999999999974333222221111 12468999999999984
No 444
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.22 E-value=0.024 Score=61.46 Aligned_cols=81 Identities=30% Similarity=0.451 Sum_probs=55.7
Q ss_pred cccCeEEEEEEecCC-CChhh-HHHHHHHHhcCCCEEEEEeCCCCCCCChHH---HHHHHHHcCCCCCCCCCCCCEEEEe
Q 004746 564 RVTDIAVIVVAADDG-IRPQT-NEAIAHAKAAGVPIVIAINKIDKDGANPER---VMQELSSIGLMPEDWGGDIPMVQIS 638 (732)
Q Consensus 564 ~~ADiVILVVDasdg-i~~qt-~EiL~~ak~~~vPIIVViNKiDL~~a~~er---v~~eL~elgl~~e~~gg~ipiVeVS 638 (732)
.+.|-+|+|+.+.++ +.... ..++-.+...++..|||+||+||.+..... ....+..++ ++++.+|
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~g---------y~v~~~s 148 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIG---------YPVLFVS 148 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCC---------eeEEEec
Confidence 346667777776653 33333 345556677789999999999997644333 222333333 6899999
Q ss_pred cCCCCCHHHHHHHHH
Q 004746 639 ALKGEKVDDLLETIM 653 (732)
Q Consensus 639 AKtGeGIdeLfe~Ii 653 (732)
+++++|+++|.+.+.
T Consensus 149 ~~~~~~~~~l~~~l~ 163 (301)
T COG1162 149 AKNGDGLEELAELLA 163 (301)
T ss_pred CcCcccHHHHHHHhc
Confidence 999999999998875
No 445
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.14 E-value=0.046 Score=60.21 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=21.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
+.+..+|.|.-|+||||||++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4467899999999999999999843
No 446
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.14 E-value=0.037 Score=59.23 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=75.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC----Ccccc--cc-C------------CceeeeeeEEEEee---------c-CC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT----KVAAA--EA-G------------GITQGIGAYKVQVP---------V-DG 539 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~----k~~vs--e~-~------------GtTrdI~~y~v~i~---------i-dg 539 (732)
.++.+++|+|.+|+|||||+..|... ...+. .. + ....++.++...-. + ..
T Consensus 73 ~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 73 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 35679999999999999999877532 11110 00 0 00011111110000 0 11
Q ss_pred cceeEEEEeCCCccccchh----hccc--ccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHH
Q 004746 540 KLQPCVFLDTPGHEAFGAM----RARG--ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER 613 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~----r~r~--~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~er 613 (732)
..+.+.|+||||....... +... ....|-++||+|++.. ..+..+++..+...++ -=++++|.|-.. ..-.
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~-~~d~~~~~~~f~~~~~-~~~I~TKlDet~-~~G~ 229 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK-SKDMIEIITNFKDIHI-DGIVFTKFDETA-SSGE 229 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC-HHHHHHHHHHhCCCCC-CEEEEEeecCCC-CccH
Confidence 2468999999995432211 1111 2345778999998632 1223344444443222 357899999743 2333
Q ss_pred HHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 614 v~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
+.......+ .|+.+++ +|+++.+
T Consensus 230 ~l~~~~~~~---------~Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 230 LLKIPAVSS---------APIVLMT--DGQDVKK 252 (270)
T ss_pred HHHHHHHHC---------cCEEEEe--CCCCCCc
Confidence 444443332 3555544 5666653
No 447
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.04 E-value=0.014 Score=65.38 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=69.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc---cccccCCceeeeeeEEEE-----------------eec----------C
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV---AAAEAGGITQGIGAYKVQ-----------------VPV----------D 538 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~---~vse~~GtTrdI~~y~v~-----------------i~i----------d 538 (732)
..+..|++||+.||||||-|-.|...-. .....+-+|.| .|++- ... .
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD--tYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD--TYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec--cchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 3477899999999999998887642211 01112223332 22211 000 1
Q ss_pred CcceeEEEEeCCCccccchhhc----ccc--cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChH
Q 004746 539 GKLQPCVFLDTPGHEAFGAMRA----RGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPE 612 (732)
Q Consensus 539 gk~i~ItLIDTPGhE~f~~~r~----r~~--~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~e 612 (732)
-..+.+.|+||.|+..+..+.. .++ ....-+.||++++.. .....+++.++...++. =+++||+|-.. ..-
T Consensus 279 l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET~-s~G 355 (407)
T COG1419 279 LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDETT-SLG 355 (407)
T ss_pred hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEcccccC-chh
Confidence 2346899999999655543322 222 223456677777632 23345566666543333 46789999643 233
Q ss_pred HHHHHHHHc
Q 004746 613 RVMQELSSI 621 (732)
Q Consensus 613 rv~~eL~el 621 (732)
.+...+.+.
T Consensus 356 ~~~s~~~e~ 364 (407)
T COG1419 356 NLFSLMYET 364 (407)
T ss_pred HHHHHHHHh
Confidence 444444443
No 448
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.92 E-value=0.022 Score=63.90 Aligned_cols=144 Identities=13% Similarity=0.253 Sum_probs=72.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC----C--cc--cccc---CCc--------eeeeeeEEEEee---------cC-C
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT----K--VA--AAEA---GGI--------TQGIGAYKVQVP---------VD-G 539 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~----k--~~--vse~---~Gt--------TrdI~~y~v~i~---------id-g 539 (732)
.++..|+|+|+.|+||||++..|... . +. ..+. +.. ..++.++...-. .. .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 45678999999999999999887521 1 11 0000 000 011111111000 00 1
Q ss_pred cceeEEEEeCCCccccchh----hcccc--cccCeEEEEEEecCCCChhh-HHHHHHHHhcCCCEEEEEeCCCCCCCChH
Q 004746 540 KLQPCVFLDTPGHEAFGAM----RARGA--RVTDIAVIVVAADDGIRPQT-NEAIAHAKAAGVPIVIAINKIDKDGANPE 612 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~----r~r~~--~~ADiVILVVDasdgi~~qt-~EiL~~ak~~~vPIIVViNKiDL~~a~~e 612 (732)
..+.+.||||||...+... ..... ...|.++||+++. ...+. .+++......+ .--+++||.|-.. ..-
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~l~-i~glI~TKLDET~-~~G 359 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAEIP-IDGFIITKMDETT-RIG 359 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCcCC-CCEEEEEcccCCC-Ccc
Confidence 2468999999996433221 11222 2347777787663 22222 23333332222 2367799999742 333
Q ss_pred HHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 613 RVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 613 rv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
.+.......+ .|+.++| +|++|.+
T Consensus 360 ~~Lsv~~~tg---------lPIsylt--~GQ~Vpd 383 (407)
T PRK12726 360 DLYTVMQETN---------LPVLYMT--DGQNITE 383 (407)
T ss_pred HHHHHHHHHC---------CCEEEEe--cCCCCCc
Confidence 4444444433 3455544 5676665
No 449
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=95.72 E-value=0.0081 Score=50.78 Aligned_cols=45 Identities=40% Similarity=0.448 Sum_probs=35.1
Q ss_pred CceEEEEEEeeEEecCCEEEE--cC--e---eEEEEEEEcCCCCccceecCCC
Q 004746 683 GPVATFILQNGTLKKGDVVVC--GE--A---FGKVRALFDDSGNRVDEAGPSI 728 (732)
Q Consensus 683 G~VatglV~~GtLk~GD~Iv~--G~--~---~gkVrsI~~~~g~~V~~A~pG~ 728 (732)
|.+++++|.+|+|++||.|.+ .. . ..+|++|+.+++ ...++.+++
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~-~~~~~~~~~ 52 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNG-DVQEAVAGA 52 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTE-EESEEETTE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeeccccccccc-CccEeCCce
Confidence 689999999999999999999 32 2 389999999964 444444443
No 450
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=95.59 E-value=0.038 Score=49.58 Aligned_cols=62 Identities=26% Similarity=0.165 Sum_probs=46.2
Q ss_pred ceEEEEeeccCC-CceEEEEEEeeEEecCCEEEE-cC----------eeEEEEEEEcCCC---CccceecCCCCeeC
Q 004746 671 GTVIEAGLHKSK-GPVATFILQNGTLKKGDVVVC-GE----------AFGKVRALFDDSG---NRVDEAGPSIPVQV 732 (732)
Q Consensus 671 g~Vies~~dkgr-G~VatglV~~GtLk~GD~Iv~-G~----------~~gkVrsI~~~~g---~~V~~A~pG~~V~I 732 (732)
+.|+....++.. |.++.++|.+|+|+.||.|.+ +. ...+|..|+...| .++++|.+|+.|.|
T Consensus 3 a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v 79 (94)
T cd04090 3 VHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLI 79 (94)
T ss_pred EEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEE
Confidence 567777778776 679999999999999999976 11 1245555554433 56899999998864
No 451
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.50 E-value=0.036 Score=49.41 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=44.0
Q ss_pred EEEEe-CCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEE
Q 004746 494 LTIMG-HVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (732)
Q Consensus 494 VaIVG-~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILV 572 (732)
|+|+| ..|+||||+.-.|...-.. .+. .+..+. .+.. +.+.|+|+|+.... .....+..+|.+|++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~----~~~----~vl~~d--~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~ 68 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR----RGK----RVLLID--LDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIP 68 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh----CCC----cEEEEe--CCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEe
Confidence 66777 6799999998776532211 111 011122 2222 67999999995432 222455789999999
Q ss_pred EEecC
Q 004746 573 VAADD 577 (732)
Q Consensus 573 VDasd 577 (732)
++.+.
T Consensus 69 ~~~~~ 73 (104)
T cd02042 69 VQPSP 73 (104)
T ss_pred ccCCH
Confidence 98764
No 452
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.47 E-value=0.059 Score=51.32 Aligned_cols=104 Identities=11% Similarity=0.072 Sum_probs=59.1
Q ss_pred EEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEEEE
Q 004746 495 TIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVA 574 (732)
Q Consensus 495 aIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVD 574 (732)
..-|..|+|||++.-.|...-... +..+.-++ .......-.+.+.++|||+.. .......+..+|.++++++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~---~~~~~~vd---~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~ 75 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKL---GKRVLLLD---ADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTT 75 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHC---CCcEEEEE---CCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcC
Confidence 345678999999976664221100 00010000 000001111679999999853 2233455788999999998
Q ss_pred ecCCCChhhHHHHHHHHhc--CCCEEEEEeCCCC
Q 004746 575 ADDGIRPQTNEAIAHAKAA--GVPIVIAINKIDK 606 (732)
Q Consensus 575 asdgi~~qt~EiL~~ak~~--~vPIIVViNKiDL 606 (732)
.+......+...++.+... ..++.+++|+++.
T Consensus 76 ~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 76 PEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 8754333444455554332 3568899999974
No 453
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.023 Score=63.46 Aligned_cols=91 Identities=21% Similarity=0.282 Sum_probs=51.8
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc----CCccc------cccC---------CceeeeeeEEEEe-------------
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK----TKVAA------AEAG---------GITQGIGAYKVQV------------- 535 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~----~k~~v------se~~---------GtTrdI~~y~v~i------------- 535 (732)
..++-.|.|+|--|+||||.+-.|.. ..+.. +..+ .+-..+.+|--..
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 34566899999999999998876641 11110 0000 1111222222111
Q ss_pred ecCCcceeEEEEeCCC-c----cccchhhc-ccccccCeEEEEEEecCC
Q 004746 536 PVDGKLQPCVFLDTPG-H----EAFGAMRA-RGARVTDIAVIVVAADDG 578 (732)
Q Consensus 536 ~idgk~i~ItLIDTPG-h----E~f~~~r~-r~~~~ADiVILVVDasdg 578 (732)
.+..+++.+.|+||.| | +-|..+.. ..+-..|-+|||+|++-+
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG 226 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG 226 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 0123568899999999 2 12333332 223457999999999854
No 454
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.25 E-value=0.07 Score=48.71 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=57.1
Q ss_pred EEEEe-CCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEE
Q 004746 494 LTIMG-HVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (732)
Q Consensus 494 VaIVG-~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILV 572 (732)
|+++| ..|+||||+.-.|-..-.... |.... -+....... ..+.|+|||+.... .....+..+|.+|++
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~---~~~~~----l~d~d~~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvv 71 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEA---GRRVL----LVDLDLQFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLV 71 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcC---CCcEE----EEECCCCCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEE
Confidence 44544 689999998776643211110 11110 111111111 27999999985432 233456889999999
Q ss_pred EEecCCCChhhHHHHHHHHhcC----CCEEEEEeC
Q 004746 573 VAADDGIRPQTNEAIAHAKAAG----VPIVIAINK 603 (732)
Q Consensus 573 VDasdgi~~qt~EiL~~ak~~~----vPIIVViNK 603 (732)
++.+..........++.++..+ ..+.+|+|+
T Consensus 72 v~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 72 TQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred ecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 9887654444555555554443 346788875
No 455
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.20 E-value=0.054 Score=46.00 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=46.8
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh-hcccccccCeEEEE
Q 004746 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM-RARGARVTDIAVIV 572 (732)
Q Consensus 494 VaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~-r~r~~~~ADiVILV 572 (732)
+++.|..|+||||+...|...-... |.. + .. ++ .+.++|+++....... .......+|.++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~----g~~--v----~~--~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v 65 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR----GKR--V----LL--ID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIV 65 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC----CCe--E----EE--EC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEe
Confidence 6788999999999999887432211 110 0 11 12 5899999985433221 13445788999999
Q ss_pred EEecCCCChhh
Q 004746 573 VAADDGIRPQT 583 (732)
Q Consensus 573 VDasdgi~~qt 583 (732)
++.+.......
T Consensus 66 ~~~~~~~~~~~ 76 (99)
T cd01983 66 TTPEALAVLGA 76 (99)
T ss_pred cCCchhhHHHH
Confidence 98876444333
No 456
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.18 E-value=0.12 Score=51.32 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=18.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+|.|.|.+|+|||||+.+++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 457
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=95.17 E-value=0.064 Score=47.95 Aligned_cols=62 Identities=23% Similarity=0.149 Sum_probs=46.8
Q ss_pred ceEEEEeecc-CCCceEEEEEEeeEEecCCEEEEcC-----------eeEEEEEEEcCCC---CccceecCCCCeeC
Q 004746 671 GTVIEAGLHK-SKGPVATFILQNGTLKKGDVVVCGE-----------AFGKVRALFDDSG---NRVDEAGPSIPVQV 732 (732)
Q Consensus 671 g~Vies~~dk-grG~VatglV~~GtLk~GD~Iv~G~-----------~~gkVrsI~~~~g---~~V~~A~pG~~V~I 732 (732)
..++....++ +.|.++.++|.+|+|+.||.+.+-. ...+|..|+...| .++++|.+|+.|.|
T Consensus 3 ~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i 79 (93)
T cd03700 3 MYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI 79 (93)
T ss_pred EEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE
Confidence 4567777777 8999999999999999999996522 1245556654434 56899999998764
No 458
>PRK01889 GTPase RsgA; Reviewed
Probab=94.97 E-value=0.027 Score=62.37 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+.+++|+|.+|+|||||+|.|.+.
T Consensus 193 ~~g~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 193 SGGKTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred hcCCEEEEECCCCccHHHHHHHHHHh
Confidence 34568999999999999999999854
No 459
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.60 E-value=0.15 Score=57.86 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=50.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHH----cCCccc------cccC---------CceeeeeeEEEEee-------------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIR----KTKVAA------AEAG---------GITQGIGAYKVQVP------------- 536 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl----~~k~~v------se~~---------GtTrdI~~y~v~i~------------- 536 (732)
..|..|.++|--|+||||.+..|. +....+ .+.+ +.-.++.+|.....
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 446689999999999999876653 211111 1111 11233334433110
Q ss_pred cCCcceeEEEEeCCCccccc-----hhhc-ccccccCeEEEEEEecCC
Q 004746 537 VDGKLQPCVFLDTPGHEAFG-----AMRA-RGARVTDIAVIVVAADDG 578 (732)
Q Consensus 537 idgk~i~ItLIDTPGhE~f~-----~~r~-r~~~~ADiVILVVDasdg 578 (732)
.....+.+.|+||+|.-... .+.. ...-..|=+|||+|+.-|
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 01234689999999932222 1111 233567999999998854
No 460
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.42 E-value=0.082 Score=44.34 Aligned_cols=42 Identities=17% Similarity=0.376 Sum_probs=23.4
Q ss_pred cccCeEEEEEEecCCCChhhH---HHHHHHHh-c-CCCEEEEEeCCC
Q 004746 564 RVTDIAVIVVAADDGIRPQTN---EAIAHAKA-A-GVPIVIAINKID 605 (732)
Q Consensus 564 ~~ADiVILVVDasdgi~~qt~---EiL~~ak~-~-~vPIIVViNKiD 605 (732)
.-.++++|++|.++..-.... .+++.++. . +.|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 567999999999974433222 23333333 2 799999999998
No 461
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.07 E-value=0.26 Score=51.25 Aligned_cols=150 Identities=16% Similarity=0.172 Sum_probs=70.6
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCccee--EEEEeCCCccccchhhccccc--ccCeE
Q 004746 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQP--CVFLDTPGHEAFGAMRARGAR--VTDIA 569 (732)
Q Consensus 494 VaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~--ItLIDTPGhE~f~~~r~r~~~--~ADiV 569 (732)
|+|+|.+|+||||+...|...-.. .+.. +..+. .+.+. +..|+..+...+.......+. .....
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~----~~~~----v~~i~----~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~ 69 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE----KNID----VIILG----TDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKY 69 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----cCCc----eEEEc----cHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCC
Confidence 789999999999999988642110 0110 01111 00000 111332221111111111111 11234
Q ss_pred EEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC----------CChHHHHHHHHH-cCCCCCCCCCCCCEEEEe
Q 004746 570 VIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG----------ANPERVMQELSS-IGLMPEDWGGDIPMVQIS 638 (732)
Q Consensus 570 ILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~----------a~~erv~~eL~e-lgl~~e~~gg~ipiVeVS 638 (732)
.+|+|..........+++..++..+.+++++.-.++... ...+.+...+.. +......+..+.+.+.+.
T Consensus 70 ~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd 149 (249)
T TIGR03574 70 SVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTID 149 (249)
T ss_pred eEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCCCCccCceEEec
Confidence 567777653334445566667777888777766666411 112222222222 211111111234667776
Q ss_pred cCCCCCHHHHHHHHHHH
Q 004746 639 ALKGEKVDDLLETIMLV 655 (732)
Q Consensus 639 AKtGeGIdeLfe~Ii~l 655 (732)
......++++.+.|...
T Consensus 150 ~~~~~~~~ei~~~i~~~ 166 (249)
T TIGR03574 150 TTKKIDYNEILEEILEI 166 (249)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 54445778888888764
No 462
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.93 E-value=0.17 Score=51.49 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=22.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.++..|+|+|.+|+|||||+++|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35567899999999999999999753
No 463
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.83 E-value=0.18 Score=50.91 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=22.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTK 515 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k 515 (732)
++.-|+|+|++|+|||||+++|+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45679999999999999999998653
No 464
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.77 E-value=0.039 Score=59.96 Aligned_cols=100 Identities=20% Similarity=0.346 Sum_probs=61.2
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc-------------
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA------------- 554 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~------------- 554 (732)
..|.++++|+|++|-|||+++.++...+....+.. ...+++..+.+|....
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~----------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED----------------AERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC----------------CccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 45678999999999999999999997654322111 1123566666665110
Q ss_pred -----------cchhhcccccccCeEEEEEEecC----CCChhhHHHHHHHH----hcCCCEEEEEeC
Q 004746 555 -----------FGAMRARGARVTDIAVIVVAADD----GIRPQTNEAIAHAK----AAGVPIVIAINK 603 (732)
Q Consensus 555 -----------f~~~r~r~~~~ADiVILVVDasd----gi~~qt~EiL~~ak----~~~vPIIVViNK 603 (732)
........++....=+||||=-+ |...+-.+.++.++ ...+|+|.|+++
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 01111133466778889998554 23333344555444 357899999876
No 465
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.61 E-value=0.082 Score=44.81 Aligned_cols=23 Identities=48% Similarity=0.595 Sum_probs=20.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHH
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl 512 (732)
++...+|.|+.++|||||++++.
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34479999999999999999986
No 466
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=93.57 E-value=0.5 Score=49.49 Aligned_cols=65 Identities=23% Similarity=0.209 Sum_probs=38.0
Q ss_pred ceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHH----hcCCCE-EEEEeCCCC
Q 004746 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAK----AAGVPI-VIAINKIDK 606 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak----~~~vPI-IVViNKiDL 606 (732)
.+.+.|+||+|.-.... ....+..+|.+|+++..+..........++.++ ..++++ .+++|++|.
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 36789999988532211 122367899999998776432222222332222 235553 478999984
No 467
>COG1161 Predicted GTPases [General function prediction only]
Probab=93.52 E-value=0.27 Score=53.78 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=67.9
Q ss_pred EEEeCCCcc-ccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcC
Q 004746 545 VFLDTPGHE-AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIG 622 (732)
Q Consensus 545 tLIDTPGhE-~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elg 622 (732)
.+-+.|||. ++.......+...|+|+.|+|+.+........+-.... +.+.++|+||+||.... .....+.+....
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~ 90 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPKEVTKKWKKYFKKEE 90 (322)
T ss_pred cccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence 344558863 45566667788999999999999977666655555554 45669999999996432 222333333321
Q ss_pred CCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 623 LMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 623 l~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
....+.++++.+.+...+..++..+
T Consensus 91 --------~~~~~~v~~~~~~~~~~i~~~~~~~ 115 (322)
T COG1161 91 --------GIKPIFVSAKSRQGGKKIRKALEKL 115 (322)
T ss_pred --------CCccEEEEeecccCccchHHHHHHH
Confidence 2467889999998888877655443
No 468
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.39 E-value=0.073 Score=48.38 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcC
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
+|+|.|.+++|||||.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 469
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.37 E-value=0.25 Score=52.86 Aligned_cols=151 Identities=14% Similarity=0.194 Sum_probs=68.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeE---EEEeCCCcc----ccchhhccccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPC---VFLDTPGHE----AFGAMRARGAR 564 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~I---tLIDTPGhE----~f~~~r~r~~~ 564 (732)
+-|+|+|.|++||||+...|...-.. .+.... .+. ...+.+ .+.|...-. .+.....+.+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~----~~~~v~----~i~----~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls 69 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE----KGKEVV----IIS----DDSLGIDRNDYADSKKEKEARGSLKSAVERALS 69 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH----TT--EE----EE-----THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh----cCCEEE----EEc----ccccccchhhhhchhhhHHHHHHHHHHHHHhhc
Confidence 45899999999999999998752111 111110 011 110000 012222110 11111222332
Q ss_pred ccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC----------C--ChHHHHHHHHH-cCCCCCCCCCC
Q 004746 565 VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG----------A--NPERVMQELSS-IGLMPEDWGGD 631 (732)
Q Consensus 565 ~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~----------a--~~erv~~eL~e-lgl~~e~~gg~ 631 (732)
. + .|+++|...-+...-.|++..++..+.++.+|...+++.. . -.+++...+.. +.........+
T Consensus 70 ~-~-~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrWD 147 (270)
T PF08433_consen 70 K-D-TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRWD 147 (270)
T ss_dssp T---SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GGG
T ss_pred c-C-eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCcc
Confidence 2 3 3556888877778888899999999999999998888631 1 12333333332 22111111124
Q ss_pred CCEEEEe-cCCCCCHHHHHHHHHHHH
Q 004746 632 IPMVQIS-ALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 632 ipiVeVS-AKtGeGIdeLfe~Ii~la 656 (732)
.+.|.+. .-....++++++.|....
T Consensus 148 ~plf~i~~~~~~~~~~~I~~~l~~~~ 173 (270)
T PF08433_consen 148 SPLFTIDSSDEELPLEEIWNALFENK 173 (270)
T ss_dssp S-SEEEE-TTS---HHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCHHHHHHHHHhcC
Confidence 5666666 666677888888885433
No 470
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.35 E-value=0.35 Score=48.76 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=22.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
+.+.++|+|..|+|||||+.+|...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4668999999999999999999854
No 471
>PF05729 NACHT: NACHT domain
Probab=93.29 E-value=0.15 Score=48.00 Aligned_cols=21 Identities=43% Similarity=0.594 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.++|.|.+|+|||||+..+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 578999999999999998874
No 472
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=92.97 E-value=0.13 Score=54.56 Aligned_cols=62 Identities=27% Similarity=0.394 Sum_probs=43.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCC--ccccc-cCCceeeeeeEEEEeecCCcceeEEEEeCCCccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTK--VAAAE-AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k--~~vse-~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~ 554 (732)
..|+|+|....|||.|+|+|++.. |..+. ....|.+|-.+.... ..+..+.+.|+||-|..+
T Consensus 22 ~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~-~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 22 AVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPL-PDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp EEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE--TTSTCEEEEEEEEECBTT
T ss_pred EEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeeccc-ccccceeEEEecchhccc
Confidence 368999999999999999998642 33222 335677765554432 356678999999999655
No 473
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.68 E-value=0.31 Score=45.33 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.7
Q ss_pred EEEEeCCCCCHHHHHHHHHcC
Q 004746 494 LTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 494 VaIVG~~nvGKSSLLnrLl~~ 514 (732)
++|.|.+|+|||+|+..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998753
No 474
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.63 E-value=0.1 Score=52.59 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=24.2
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
+..++..|+|.|.+|+|||||++.|...
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467889999999999999999998753
No 475
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.32 E-value=0.13 Score=47.73 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK 515 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k 515 (732)
..+-.++|+|..|+|||||++.|.+..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 455689999999999999999988654
No 476
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.31 E-value=0.14 Score=45.27 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCC
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTK 515 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k 515 (732)
...++|+|++|+|||||+..|...-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 4579999999999999999998643
No 477
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.29 E-value=0.12 Score=49.86 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=20.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
+.|+|+|..|+|||||+..|++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 478
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=92.27 E-value=0.37 Score=52.67 Aligned_cols=27 Identities=48% Similarity=0.589 Sum_probs=23.3
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
...+.|.-.|.|--|+|||||+|+++.
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~ 79 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILT 79 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHc
Confidence 455677889999999999999999984
No 479
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.25 E-value=0.35 Score=49.48 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTK 515 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k 515 (732)
++.-++|.|++|+|||||+.+|+...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 56679999999999999999999655
No 480
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=92.14 E-value=0.055 Score=64.51 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=40.6
Q ss_pred eeEEEEeCCCc-------------cccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHh---cCCCEEEEEeCCC
Q 004746 542 QPCVFLDTPGH-------------EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKA---AGVPIVIAINKID 605 (732)
Q Consensus 542 i~ItLIDTPGh-------------E~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~---~~vPIIVViNKiD 605 (732)
..++++|.||. +.+..|...|+...+++|+.+...+ ....+-+.+..++. .+...|.|++|.|
T Consensus 132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an-~d~ats~alkiarevDp~g~RTigvitK~D 210 (657)
T KOG0446|consen 132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN-SDIATSPALVVAREVDPGGSRTLEVITKFD 210 (657)
T ss_pred chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh-hhhhcCHHHHHHHhhCCCccchhHHhhhHH
Confidence 45889999992 3345566678888888888887654 22222334444333 3445677777777
Q ss_pred CC
Q 004746 606 KD 607 (732)
Q Consensus 606 L~ 607 (732)
+.
T Consensus 211 lm 212 (657)
T KOG0446|consen 211 FM 212 (657)
T ss_pred hh
Confidence 64
No 481
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.85 E-value=0.14 Score=47.65 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.|+++|.+|+|||||+..|..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999974
No 482
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=91.85 E-value=0.13 Score=51.92 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.6
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.+++..|+|+|.+|+|||||++.|..
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999974
No 483
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.41 E-value=0.19 Score=50.16 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.4
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
+..+..|+|+|.+|+|||||++.|...
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 456678999999999999999999854
No 484
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.35 E-value=0.17 Score=53.01 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..++-.|+|+|++|+|||||||.|-.
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 44566799999999999999998865
No 485
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.33 E-value=0.18 Score=53.50 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
...+=.|+|+|++|||||||++.+.+
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34556799999999999999999875
No 486
>PRK08233 hypothetical protein; Provisional
Probab=91.24 E-value=0.19 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
+..|+|.|.+|+|||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467999999999999999999753
No 487
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.19 E-value=0.13 Score=49.82 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=17.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcC
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999854
No 488
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.15 E-value=0.19 Score=45.49 Aligned_cols=21 Identities=29% Similarity=0.435 Sum_probs=19.0
Q ss_pred EEEEeCCCCCHHHHHHHHHcC
Q 004746 494 LTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 494 VaIVG~~nvGKSSLLnrLl~~ 514 (732)
|+|.|.+|+|||||++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999754
No 489
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.98 E-value=0.26 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..|.++|.-|+|||||++.|..+
T Consensus 189 ~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhcc
Confidence 36899999999999999998754
No 490
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.89 E-value=0.35 Score=55.57 Aligned_cols=121 Identities=22% Similarity=0.217 Sum_probs=64.4
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHH----cCCccccccCCce-------------e--------eeeeEEEEe-------
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIR----KTKVAAAEAGGIT-------------Q--------GIGAYKVQV------- 535 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl----~~k~~vse~~GtT-------------r--------dI~~y~v~i------- 535 (732)
..+|+.|+|+|-.||||||=|-.|. ..++.+--...-| + -+..|...+
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~v 454 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGV 454 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHH
Confidence 4589999999999999999776653 4444321111000 0 011111110
Q ss_pred ------ecCCcceeEEEEeCCC--ccccchhhc--c--cccccCeEEEEEEecCCC--ChhhHHHHHHHHhcCCC---EE
Q 004746 536 ------PVDGKLQPCVFLDTPG--HEAFGAMRA--R--GARVTDIAVIVVAADDGI--RPQTNEAIAHAKAAGVP---IV 598 (732)
Q Consensus 536 ------~idgk~i~ItLIDTPG--hE~f~~~r~--r--~~~~ADiVILVVDasdgi--~~qt~EiL~~ak~~~vP---II 598 (732)
.-...++.+.|+||+| |..-.-|+. . .+...|.||+|=.+--|. ..|..++-..+.....| =-
T Consensus 455 ak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~ 534 (587)
T KOG0781|consen 455 AKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDG 534 (587)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccce
Confidence 0012457899999999 433333332 2 236789999986443221 12222222223333333 24
Q ss_pred EEEeCCCCCC
Q 004746 599 IAINKIDKDG 608 (732)
Q Consensus 599 VViNKiDL~~ 608 (732)
++++|+|..+
T Consensus 535 ~~ltk~dtv~ 544 (587)
T KOG0781|consen 535 ILLTKFDTVD 544 (587)
T ss_pred EEEEeccchh
Confidence 7899999643
No 491
>PRK07261 topology modulation protein; Provisional
Probab=90.78 E-value=0.19 Score=49.70 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+|+|+|.+|+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 492
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=90.76 E-value=0.22 Score=48.55 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.+.|+|+|.+|+|||||+..|..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999973
No 493
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.70 E-value=0.22 Score=52.27 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=22.7
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..++-.|+|||++|+||||||.+|-.
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 45667899999999999999999864
No 494
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=90.61 E-value=0.23 Score=41.96 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.1
Q ss_pred EEEEeCCCCCHHHHHHHHHcC
Q 004746 494 LTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 494 VaIVG~~nvGKSSLLnrLl~~ 514 (732)
|+|+|.+++||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999764
No 495
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.56 E-value=0.56 Score=50.29 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.2
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..++..|+|+|+.|+||||++..|..
T Consensus 191 ~~~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 496
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.45 E-value=0.22 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.+ .++|+|+.|+|||||++.|.+-
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCC
Confidence 46 8999999999999999999864
No 497
>PRK08118 topology modulation protein; Reviewed
Probab=90.42 E-value=0.22 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.+|+|+|.+|+|||||...|..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 498
>PRK04195 replication factor C large subunit; Provisional
Probab=90.38 E-value=0.71 Score=53.05 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+.|.|++|+|||||+++|.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999999764
No 499
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.38 E-value=0.24 Score=49.39 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|.+|+|||||++.|++.
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 445678999999999999999999863
No 500
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=90.35 E-value=0.24 Score=48.43 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcC
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.|+|+|.+|+|||||+++|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
Done!