Query 004746
Match_columns 732
No_of_seqs 623 out of 3889
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 04:28:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3izy_P Translation initiation 100.0 1.7E-38 5.9E-43 358.9 10.4 241 489-732 2-242 (537)
2 1zo1_I IF2, translation initia 100.0 4.6E-38 1.6E-42 352.9 12.6 240 489-732 2-241 (501)
3 1g7s_A Translation initiation 100.0 5.6E-32 1.9E-36 309.2 18.9 242 489-730 3-308 (594)
4 1s0u_A EIF-2-gamma, translatio 100.0 5.8E-30 2E-34 278.7 24.1 238 490-732 7-291 (408)
5 3j2k_7 ERF3, eukaryotic polype 100.0 5.7E-30 1.9E-34 282.3 22.3 234 489-732 15-307 (439)
6 1kk1_A EIF2gamma; initiation o 100.0 2E-29 6.7E-34 274.4 24.1 237 491-732 10-293 (410)
7 1d2e_A Elongation factor TU (E 100.0 1.7E-29 5.9E-34 274.3 18.7 230 491-732 3-270 (397)
8 1wb1_A Translation elongation 100.0 3E-30 1E-34 287.8 11.7 232 490-732 18-264 (482)
9 2c78_A Elongation factor TU-A; 100.0 3.2E-29 1.1E-33 272.3 18.1 231 490-732 10-288 (405)
10 3p26_A Elongation factor 1 alp 100.0 5.8E-29 2E-33 276.8 19.5 236 489-732 31-342 (483)
11 3sjy_A Translation initiation 100.0 4.6E-28 1.6E-32 263.4 24.4 240 488-732 5-285 (403)
12 3mca_A HBS1, elongation factor 100.0 2.1E-29 7.2E-34 287.7 14.2 231 489-732 175-469 (592)
13 2elf_A Protein translation elo 100.0 1.5E-28 5.2E-33 265.9 19.7 223 493-732 23-257 (370)
14 1r5b_A Eukaryotic peptide chai 100.0 3.2E-29 1.1E-33 278.3 11.8 235 489-732 41-337 (467)
15 3izq_1 HBS1P, elongation facto 100.0 2E-28 6.9E-33 280.6 17.7 236 489-732 165-476 (611)
16 1f60_A Elongation factor EEF1A 100.0 9.2E-29 3.1E-33 274.0 13.8 233 491-732 7-308 (458)
17 1jny_A EF-1-alpha, elongation 100.0 2.8E-28 9.5E-33 268.0 17.4 234 490-732 5-297 (435)
18 1zun_B Sulfate adenylate trans 100.0 2.7E-28 9.3E-33 267.8 17.1 233 491-732 24-308 (434)
19 2ywe_A GTP-binding protein LEP 100.0 1.7E-27 5.7E-32 272.5 22.8 233 490-730 5-258 (600)
20 3cb4_D GTP-binding protein LEP 99.9 3.4E-27 1.2E-31 269.9 22.3 233 490-730 3-256 (599)
21 3avx_A Elongation factor TS, e 99.9 4.8E-27 1.6E-31 282.2 19.8 232 490-732 295-561 (1289)
22 2lkc_A Translation initiation 99.9 3.2E-26 1.1E-30 214.8 17.5 173 487-663 4-176 (178)
23 3tr5_A RF-3, peptide chain rel 99.9 5.2E-26 1.8E-30 256.7 19.7 239 490-732 12-366 (528)
24 2rdo_7 EF-G, elongation factor 99.9 6.7E-25 2.3E-29 255.1 26.2 244 489-732 8-385 (704)
25 3vqt_A RF-3, peptide chain rel 99.9 2E-25 6.8E-30 253.0 18.5 240 489-732 29-384 (548)
26 2h5e_A Peptide chain release f 99.9 4.7E-25 1.6E-29 249.0 19.9 239 490-732 12-367 (529)
27 1dar_A EF-G, elongation factor 99.9 1.3E-24 4.5E-29 252.2 21.6 239 490-732 11-377 (691)
28 2dy1_A Elongation factor G; tr 99.9 6.4E-25 2.2E-29 253.7 16.3 238 489-732 7-350 (665)
29 3j25_A Tetracycline resistance 99.9 6.6E-26 2.3E-30 260.8 4.3 237 490-732 1-315 (638)
30 4fn5_A EF-G 1, elongation fact 99.9 1E-23 3.5E-28 245.1 18.2 243 490-732 12-388 (709)
31 2xex_A Elongation factor G; GT 99.9 3.3E-23 1.1E-27 240.6 20.3 240 489-732 8-377 (693)
32 3gee_A MNME, tRNA modification 99.9 9.9E-25 3.4E-29 243.5 7.1 226 411-657 159-397 (476)
33 4dkx_A RAS-related protein RAB 99.9 1E-22 3.6E-27 204.5 16.8 156 490-656 12-174 (216)
34 3t1o_A Gliding protein MGLA; G 99.9 3E-22 1E-26 190.0 15.5 158 490-656 13-190 (198)
35 1upt_A ARL1, ADP-ribosylation 99.9 1E-21 3.4E-26 182.6 17.1 159 487-656 3-167 (171)
36 3tkl_A RAS-related protein RAB 99.9 1.1E-21 3.7E-26 187.2 16.8 158 489-657 14-178 (196)
37 3tw8_B RAS-related protein RAB 99.9 9.8E-22 3.3E-26 183.9 16.2 158 489-657 7-170 (181)
38 3geh_A MNME, tRNA modification 99.9 2.5E-23 8.7E-28 231.4 5.8 223 411-657 151-383 (462)
39 1g16_A RAS-related protein SEC 99.9 7.3E-22 2.5E-26 183.0 14.6 155 491-656 3-163 (170)
40 1z08_A RAS-related protein RAB 99.9 9.6E-22 3.3E-26 182.6 15.3 155 490-655 5-166 (170)
41 2efe_B Small GTP-binding prote 99.9 1.1E-21 3.7E-26 184.5 15.8 156 489-655 10-172 (181)
42 1c1y_A RAS-related protein RAP 99.9 1.3E-21 4.4E-26 180.8 15.7 154 491-655 3-164 (167)
43 3clv_A RAB5 protein, putative; 99.9 2.3E-21 8E-26 183.5 17.6 157 489-656 5-202 (208)
44 3kkq_A RAS-related protein M-R 99.9 1.8E-21 6.2E-26 184.1 16.7 156 489-656 16-180 (183)
45 1z0f_A RAB14, member RAS oncog 99.9 1.3E-21 4.4E-26 182.8 15.5 156 489-655 13-175 (179)
46 2bme_A RAB4A, RAS-related prot 99.9 2E-21 6.7E-26 183.9 16.8 157 489-656 8-171 (186)
47 4bas_A ADP-ribosylation factor 99.9 9.1E-22 3.1E-26 188.1 14.4 161 488-657 14-188 (199)
48 2fn4_A P23, RAS-related protei 99.9 1.9E-21 6.5E-26 182.0 15.9 158 488-657 6-171 (181)
49 3t5g_A GTP-binding protein RHE 99.9 1.4E-21 4.9E-26 184.4 15.0 156 490-657 5-168 (181)
50 2fu5_C RAS-related protein RAB 99.9 5.9E-22 2E-26 187.4 12.3 156 490-656 7-169 (183)
51 2g6b_A RAS-related protein RAB 99.9 2.7E-21 9.3E-26 181.6 16.7 157 489-656 8-172 (180)
52 3cph_A RAS-related protein SEC 99.9 1.7E-21 5.9E-26 188.5 15.7 159 487-656 16-180 (213)
53 2hxs_A RAB-26, RAS-related pro 99.9 1E-21 3.5E-26 184.1 13.6 157 489-656 4-171 (178)
54 3bc1_A RAS-related protein RAB 99.9 2.3E-21 8E-26 183.0 16.1 156 490-656 10-183 (195)
55 1kao_A RAP2A; GTP-binding prot 99.9 1.1E-21 3.9E-26 180.3 13.3 154 491-656 3-164 (167)
56 2nzj_A GTP-binding protein REM 99.9 2.7E-21 9.1E-26 180.4 16.0 154 490-656 3-167 (175)
57 1wms_A RAB-9, RAB9, RAS-relate 99.9 5.3E-21 1.8E-25 179.1 18.1 157 490-656 6-172 (177)
58 1u8z_A RAS-related protein RAL 99.9 1.5E-21 5.1E-26 179.7 13.8 154 491-656 4-165 (168)
59 2atx_A Small GTP binding prote 99.9 4.8E-21 1.6E-25 183.6 17.8 156 490-656 17-191 (194)
60 1r2q_A RAS-related protein RAB 99.9 2.5E-21 8.4E-26 179.0 15.3 154 490-654 5-165 (170)
61 3reg_A RHO-like small GTPase; 99.9 2.5E-21 8.5E-26 185.9 15.7 157 489-656 21-186 (194)
62 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.2E-21 7.6E-26 182.7 14.9 156 490-656 4-178 (186)
63 1ky3_A GTP-binding protein YPT 99.9 4.3E-21 1.5E-25 179.7 16.8 159 489-656 6-176 (182)
64 4dsu_A GTPase KRAS, isoform 2B 99.9 2.5E-21 8.6E-26 182.8 15.2 156 490-657 3-165 (189)
65 1vg8_A RAS-related protein RAB 99.9 4.7E-21 1.6E-25 184.7 17.3 159 489-656 6-173 (207)
66 3q85_A GTP-binding protein REM 99.9 3.3E-21 1.1E-25 179.2 15.6 154 492-656 3-165 (169)
67 1zj6_A ADP-ribosylation factor 99.9 3.4E-21 1.2E-25 183.9 16.0 159 488-657 13-177 (187)
68 2bcg_Y Protein YP2, GTP-bindin 99.9 3.7E-21 1.3E-25 186.4 16.4 157 489-656 6-169 (206)
69 1z2a_A RAS-related protein RAB 99.9 2.5E-21 8.6E-26 179.0 14.5 155 490-655 4-164 (168)
70 2hup_A RAS-related protein RAB 99.9 2.1E-21 7.2E-26 189.1 14.7 157 489-656 27-191 (201)
71 2y8e_A RAB-protein 6, GH09086P 99.9 4.6E-21 1.6E-25 179.0 16.4 155 490-655 13-174 (179)
72 2a9k_A RAS-related protein RAL 99.9 2.6E-21 8.8E-26 182.0 14.7 156 490-657 17-180 (187)
73 3q72_A GTP-binding protein RAD 99.9 2.8E-21 9.4E-26 179.2 14.6 152 491-656 2-162 (166)
74 2gf9_A RAS-related protein RAB 99.9 5.6E-21 1.9E-25 182.7 17.2 156 490-656 21-183 (189)
75 1zbd_A Rabphilin-3A; G protein 99.9 3.5E-21 1.2E-25 185.8 15.7 156 490-656 7-169 (203)
76 2ew1_A RAS-related protein RAB 99.9 2.5E-21 8.6E-26 190.1 14.8 157 489-656 24-187 (201)
77 2gco_A H9, RHO-related GTP-bin 99.9 4E-21 1.4E-25 186.5 16.0 159 486-655 20-197 (201)
78 1z0j_A RAB-22, RAS-related pro 99.9 3.8E-21 1.3E-25 178.2 14.8 155 490-655 5-166 (170)
79 1ek0_A Protein (GTP-binding pr 99.9 3.2E-21 1.1E-25 178.3 14.2 153 491-654 3-165 (170)
80 1x3s_A RAS-related protein RAB 99.9 6.3E-21 2.2E-25 181.3 16.4 156 490-656 14-176 (195)
81 2oil_A CATX-8, RAS-related pro 99.9 2.2E-21 7.6E-26 185.7 13.3 158 488-656 22-186 (193)
82 2j0v_A RAC-like GTP-binding pr 99.9 3.4E-21 1.2E-25 187.4 14.7 156 490-656 8-178 (212)
83 1xzp_A Probable tRNA modificat 99.9 1.5E-22 5.1E-27 226.3 5.6 220 412-655 172-402 (482)
84 2q3h_A RAS homolog gene family 99.9 6.1E-21 2.1E-25 183.8 16.1 159 487-656 16-193 (201)
85 2p5s_A RAS and EF-hand domain 99.9 4.2E-21 1.4E-25 185.8 15.0 157 489-656 26-195 (199)
86 2a5j_A RAS-related protein RAB 99.9 4.9E-21 1.7E-25 183.8 15.4 157 489-656 19-182 (191)
87 2dyk_A GTP-binding protein; GT 99.9 2.7E-21 9.2E-26 178.0 12.9 150 492-655 2-159 (161)
88 2fg5_A RAB-22B, RAS-related pr 99.9 3.7E-21 1.2E-25 185.2 14.3 156 489-655 21-183 (192)
89 3q3j_B RHO-related GTP-binding 99.9 4.1E-21 1.4E-25 189.5 14.9 159 488-657 24-202 (214)
90 3bwd_D RAC-like GTP-binding pr 99.9 1.9E-21 6.4E-26 183.0 11.9 156 489-655 6-178 (182)
91 2bov_A RAla, RAS-related prote 99.9 5.3E-21 1.8E-25 183.8 15.3 158 489-658 12-177 (206)
92 4gzl_A RAS-related C3 botulinu 99.9 4.6E-21 1.6E-25 187.1 15.1 155 489-654 28-201 (204)
93 2h17_A ADP-ribosylation factor 99.9 5.3E-21 1.8E-25 182.0 15.0 157 487-654 17-179 (181)
94 1r8s_A ADP-ribosylation factor 99.9 7E-21 2.4E-25 176.2 15.4 153 492-655 1-159 (164)
95 1z06_A RAS-related protein RAB 99.9 3.2E-21 1.1E-25 184.4 13.0 156 489-655 18-185 (189)
96 1ksh_A ARF-like protein 2; sma 99.8 9.6E-21 3.3E-25 179.9 16.0 157 489-656 16-178 (186)
97 1zd9_A ADP-ribosylation factor 99.8 5.9E-21 2E-25 183.1 14.6 159 487-655 18-182 (188)
98 2il1_A RAB12; G-protein, GDP, 99.8 3.9E-21 1.3E-25 185.3 13.2 159 489-656 24-188 (192)
99 1f6b_A SAR1; gtpases, N-termin 99.8 5.7E-21 1.9E-25 186.0 14.4 161 487-654 21-195 (198)
100 2o52_A RAS-related protein RAB 99.8 5.1E-21 1.7E-25 186.0 13.9 157 489-656 23-186 (200)
101 2ce2_X GTPase HRAS; signaling 99.8 1.8E-20 6.1E-25 171.7 16.6 154 491-656 3-163 (166)
102 2h57_A ADP-ribosylation factor 99.8 9.8E-21 3.3E-25 181.2 15.2 159 488-656 18-185 (190)
103 3cpj_B GTP-binding protein YPT 99.8 4.4E-21 1.5E-25 189.4 13.1 157 489-656 11-174 (223)
104 3dz8_A RAS-related protein RAB 99.8 3.5E-21 1.2E-25 184.8 11.8 157 489-656 21-184 (191)
105 2erx_A GTP-binding protein DI- 99.8 1.3E-20 4.6E-25 174.4 15.2 154 491-656 3-165 (172)
106 2fv8_A H6, RHO-related GTP-bin 99.8 1.2E-20 4E-25 184.1 15.5 163 488-656 22-198 (207)
107 2gf0_A GTP-binding protein DI- 99.8 2E-20 6.7E-25 178.8 16.6 157 489-657 6-170 (199)
108 1m2o_B GTP-binding protein SAR 99.8 1.6E-20 5.4E-25 181.4 15.9 160 488-654 20-188 (190)
109 3oes_A GTPase rhebl1; small GT 99.8 6.4E-21 2.2E-25 184.7 13.2 158 488-657 21-186 (201)
110 1m7b_A RND3/RHOE small GTP-bin 99.8 8.2E-21 2.8E-25 181.2 13.6 157 489-656 5-181 (184)
111 1n0u_A EF-2, elongation factor 99.8 9.3E-21 3.2E-25 224.3 17.2 118 490-607 18-163 (842)
112 2f7s_A C25KG, RAS-related prot 99.8 4.9E-21 1.7E-25 187.0 12.3 157 489-656 23-197 (217)
113 4dhe_A Probable GTP-binding pr 99.8 2.9E-21 9.8E-26 189.0 10.5 163 489-656 27-209 (223)
114 1moz_A ARL1, ADP-ribosylation 99.8 1.4E-20 4.7E-25 177.6 14.8 157 489-656 16-178 (183)
115 1svi_A GTP-binding protein YSX 99.8 1.1E-20 3.7E-25 180.5 14.2 155 489-655 21-192 (195)
116 2x77_A ADP-ribosylation factor 99.8 9.6E-21 3.3E-25 180.7 13.7 158 489-657 20-183 (189)
117 2yc2_C IFT27, small RAB-relate 99.8 3.4E-21 1.2E-25 185.0 10.4 157 489-656 18-190 (208)
118 3ihw_A Centg3; RAS, centaurin, 99.8 3.2E-20 1.1E-24 178.6 17.0 153 487-656 16-178 (184)
119 3con_A GTPase NRAS; structural 99.8 4.5E-20 1.6E-24 175.8 17.8 156 490-657 20-182 (190)
120 1fzq_A ADP-ribosylation factor 99.8 2.5E-20 8.6E-25 178.3 15.7 156 489-655 14-175 (181)
121 3cbq_A GTP-binding protein REM 99.8 1.5E-20 5E-25 183.0 14.3 157 489-656 21-186 (195)
122 3pqc_A Probable GTP-binding pr 99.8 1.9E-20 6.4E-25 177.6 14.5 157 489-656 21-192 (195)
123 2fh5_B SR-beta, signal recogni 99.8 1.9E-20 6.4E-25 182.5 14.8 162 489-655 5-213 (214)
124 2j1l_A RHO-related GTP-binding 99.8 2.1E-20 7.1E-25 183.8 15.2 158 488-656 31-207 (214)
125 4djt_A GTP-binding nuclear pro 99.8 5.9E-21 2E-25 186.5 11.0 158 490-657 10-174 (218)
126 2b6h_A ADP-ribosylation factor 99.8 2.6E-20 9E-25 180.1 15.2 157 488-655 26-188 (192)
127 2iwr_A Centaurin gamma 1; ANK 99.8 2.3E-20 7.8E-25 175.7 14.3 150 490-656 6-167 (178)
128 2atv_A RERG, RAS-like estrogen 99.8 4E-20 1.4E-24 178.1 15.8 155 489-656 26-189 (196)
129 3o47_A ADP-ribosylation factor 99.8 1.4E-20 4.7E-25 199.9 13.7 226 411-656 84-325 (329)
130 2wji_A Ferrous iron transport 99.8 3.5E-20 1.2E-24 174.5 14.8 150 491-655 3-162 (165)
131 1gwn_A RHO-related GTP-binding 99.8 2.6E-20 9E-25 183.1 13.6 157 489-656 26-202 (205)
132 3gj0_A GTP-binding nuclear pro 99.8 3E-21 1E-25 189.7 6.9 155 489-656 13-173 (221)
133 3iev_A GTP-binding protein ERA 99.8 3.5E-20 1.2E-24 194.9 15.0 158 491-657 10-181 (308)
134 3c5c_A RAS-like protein 12; GD 99.8 4.7E-20 1.6E-24 177.3 14.6 155 489-656 19-184 (187)
135 1wf3_A GTP-binding protein; GT 99.8 3.1E-20 1E-24 195.4 13.7 154 490-655 6-170 (301)
136 2hjg_A GTP-binding protein ENG 99.8 1.8E-20 6E-25 205.8 12.1 161 489-657 173-348 (436)
137 2cxx_A Probable GTP-binding pr 99.8 1.8E-20 6.1E-25 177.5 10.1 155 492-656 2-182 (190)
138 2gj8_A MNME, tRNA modification 99.8 1.5E-20 5.3E-25 179.0 9.4 150 490-656 3-164 (172)
139 2qu8_A Putative nucleolar GTP- 99.8 1.3E-19 4.4E-24 179.9 16.1 161 485-656 23-203 (228)
140 3llu_A RAS-related GTP-binding 99.8 7.1E-20 2.4E-24 177.1 13.9 161 488-655 17-194 (196)
141 2wjg_A FEOB, ferrous iron tran 99.8 1.7E-19 5.8E-24 171.2 15.3 152 490-656 6-167 (188)
142 1ega_A Protein (GTP-binding pr 99.8 3E-19 1E-23 187.4 18.1 156 490-655 7-172 (301)
143 3l0i_B RAS-related protein RAB 99.8 2.4E-21 8.2E-26 187.5 1.4 155 489-654 31-192 (199)
144 1mky_A Probable GTP-binding pr 99.8 1.1E-19 3.7E-24 199.6 14.3 153 492-656 2-164 (439)
145 3iby_A Ferrous iron transport 99.8 1.5E-19 5.2E-24 185.7 14.2 149 492-655 2-164 (256)
146 3a1s_A Iron(II) transport prot 99.8 1.9E-19 6.4E-24 185.1 14.6 152 490-657 4-166 (258)
147 2g3y_A GTP-binding protein GEM 99.8 2.3E-19 8E-24 179.2 14.5 156 490-656 36-201 (211)
148 4dcu_A GTP-binding protein ENG 99.8 1.1E-19 3.9E-24 200.4 13.0 161 488-656 192-367 (456)
149 2cjw_A GTP-binding protein GEM 99.8 4E-19 1.4E-23 172.4 14.6 156 490-656 5-170 (192)
150 3i8s_A Ferrous iron transport 99.8 9.9E-20 3.4E-24 188.2 10.8 151 490-655 2-166 (274)
151 2wkq_A NPH1-1, RAS-related C3 99.8 5.9E-19 2E-23 182.3 16.1 160 486-656 150-328 (332)
152 3b1v_A Ferrous iron uptake tra 99.8 4.2E-19 1.4E-23 184.4 14.8 149 491-655 3-161 (272)
153 3th5_A RAS-related C3 botulinu 99.7 4.8E-21 1.6E-25 185.7 0.0 163 489-655 28-202 (204)
154 2zej_A Dardarin, leucine-rich 99.8 2.1E-19 7.3E-24 172.0 10.9 159 491-656 2-176 (184)
155 3lvq_E ARF-GAP with SH3 domain 99.8 3.7E-19 1.3E-23 197.1 14.1 159 487-656 318-482 (497)
156 3k53_A Ferrous iron transport 99.8 9.9E-19 3.4E-23 179.4 16.0 149 491-657 3-165 (271)
157 2hjg_A GTP-binding protein ENG 99.8 3.9E-19 1.3E-23 195.1 11.9 151 492-656 4-163 (436)
158 3qq5_A Small GTP-binding prote 99.8 2.5E-19 8.4E-24 197.5 7.2 154 490-656 33-194 (423)
159 3c5h_A Glucocorticoid receptor 99.8 8.7E-19 3E-23 178.8 9.4 162 488-656 16-253 (255)
160 3r7w_A Gtpase1, GTP-binding pr 99.8 3.4E-18 1.2E-22 179.5 14.0 157 491-654 3-177 (307)
161 2f9l_A RAB11B, member RAS onco 99.7 1.2E-17 4.2E-22 161.7 15.4 156 490-656 4-166 (199)
162 1mky_A Probable GTP-binding pr 99.7 9.3E-18 3.2E-22 184.3 15.8 161 489-657 178-354 (439)
163 4dcu_A GTP-binding protein ENG 99.7 2.6E-18 8.8E-23 189.6 10.9 152 490-655 22-182 (456)
164 2xtp_A GTPase IMAP family memb 99.7 4.2E-18 1.4E-22 172.5 11.6 161 489-658 20-208 (260)
165 3dpu_A RAB family protein; roc 99.7 8.6E-18 2.9E-22 188.8 10.2 157 488-657 38-207 (535)
166 2aka_B Dynamin-1; fusion prote 99.7 1.3E-17 4.3E-22 171.1 7.7 165 489-657 24-252 (299)
167 2e87_A Hypothetical protein PH 99.7 2.3E-16 8E-21 168.6 17.4 156 489-657 165-335 (357)
168 1oix_A RAS-related protein RAB 99.7 2.2E-16 7.4E-21 152.8 15.2 154 491-655 29-189 (191)
169 3t5d_A Septin-7; GTP-binding p 99.7 4.3E-17 1.5E-21 167.7 10.5 155 491-655 8-201 (274)
170 3lxw_A GTPase IMAP family memb 99.7 2.3E-17 8E-22 167.9 8.2 159 489-657 19-207 (247)
171 1lnz_A SPO0B-associated GTP-bi 99.7 3.1E-17 1.1E-21 176.0 7.8 155 491-657 158-329 (342)
172 3r7w_B Gtpase2, GTP-binding pr 99.7 1.9E-16 6.5E-21 169.6 12.7 155 493-654 1-170 (331)
173 1nrj_B SR-beta, signal recogni 99.7 4.8E-16 1.7E-20 151.7 14.3 112 488-610 9-136 (218)
174 2qtf_A Protein HFLX, GTP-bindi 99.7 3.7E-16 1.3E-20 168.9 14.5 157 491-658 178-354 (364)
175 3lxx_A GTPase IMAP family memb 99.6 1.4E-15 4.8E-20 152.3 13.8 154 489-656 27-212 (239)
176 1jwy_B Dynamin A GTPase domain 99.6 6E-16 2.1E-20 160.3 11.2 162 489-657 22-261 (315)
177 1pui_A ENGB, probable GTP-bind 99.6 1.3E-15 4.3E-20 147.6 11.8 159 488-656 23-197 (210)
178 2ged_A SR-beta, signal recogni 99.6 1.3E-15 4.5E-20 145.3 7.2 110 489-609 46-171 (193)
179 2j69_A Bacterial dynamin-like 99.6 8.9E-15 3E-19 170.1 13.1 170 486-655 64-322 (695)
180 2x2e_A Dynamin-1; nitration, h 99.5 1.3E-15 4.5E-20 162.6 3.8 163 489-655 29-255 (353)
181 3def_A T7I23.11 protein; chlor 99.5 2.3E-14 7.8E-19 146.5 12.5 115 489-607 34-164 (262)
182 1wxq_A GTP-binding protein; st 99.5 1.1E-14 3.7E-19 159.2 9.6 87 492-578 1-114 (397)
183 2qag_A Septin-2, protein NEDD5 99.5 1.5E-14 5E-19 155.8 8.0 159 490-655 36-230 (361)
184 2wsm_A Hydrogenase expression/ 99.5 3.2E-14 1.1E-18 139.3 9.3 153 490-656 29-212 (221)
185 1h65_A Chloroplast outer envel 99.5 8.2E-14 2.8E-18 142.8 10.7 116 489-608 37-168 (270)
186 3t34_A Dynamin-related protein 99.5 6.3E-14 2.2E-18 149.6 10.0 159 488-653 31-256 (360)
187 3p32_A Probable GTPase RV1496/ 99.4 2.6E-13 8.8E-18 145.3 10.5 160 488-656 76-282 (355)
188 1udx_A The GTP-binding protein 99.4 8.5E-13 2.9E-17 145.3 14.0 158 489-657 155-324 (416)
189 2www_A Methylmalonic aciduria 99.4 1.1E-13 3.9E-18 148.2 6.3 161 489-656 72-277 (349)
190 3zvr_A Dynamin-1; hydrolase, D 99.4 6E-13 2.1E-17 156.0 10.9 163 489-655 49-275 (772)
191 2p67_A LAO/AO transport system 99.4 8.2E-13 2.8E-17 140.8 9.6 160 488-656 53-259 (341)
192 2qpt_A EH domain-containing pr 99.4 7.2E-13 2.5E-17 150.4 9.3 120 489-608 63-232 (550)
193 1yrb_A ATP(GTP)binding protein 99.3 3.3E-12 1.1E-16 128.4 11.6 116 541-657 108-256 (262)
194 2qnr_A Septin-2, protein NEDD5 99.3 1.4E-12 4.6E-17 137.1 8.6 155 491-656 18-212 (301)
195 1jal_A YCHF protein; nucleotid 99.3 9.9E-12 3.4E-16 134.7 13.8 85 491-577 2-108 (363)
196 2hf9_A Probable hydrogenase ni 99.3 1.5E-11 5.1E-16 120.7 13.7 154 489-656 36-222 (226)
197 4a9a_A Ribosome-interacting GT 99.3 1.1E-11 3.7E-16 135.0 13.4 164 492-661 73-303 (376)
198 2dby_A GTP-binding protein; GD 99.2 1.1E-11 3.9E-16 134.3 9.0 86 492-577 2-111 (368)
199 2qag_C Septin-7; cell cycle, c 99.2 1.9E-11 6.6E-16 134.6 10.0 154 491-654 31-223 (418)
200 3ohm_A Guanine nucleotide-bind 99.2 4.9E-11 1.7E-15 127.6 11.5 117 540-657 165-317 (327)
201 1cip_A Protein (guanine nucleo 99.1 1.2E-10 4.2E-15 125.5 10.8 130 523-656 178-342 (353)
202 4fid_A G protein alpha subunit 99.1 1.1E-10 3.7E-15 125.6 9.6 117 540-656 159-326 (340)
203 1u0l_A Probable GTPase ENGC; p 99.1 5E-11 1.7E-15 125.0 5.3 133 506-653 32-168 (301)
204 2qm8_A GTPase/ATPase; G protei 99.1 2.2E-10 7.4E-15 122.4 9.9 161 488-657 52-260 (337)
205 1zcb_A G alpha I/13; GTP-bindi 99.0 3.4E-10 1.2E-14 122.4 9.4 154 500-657 156-352 (362)
206 2j37_W Signal recognition part 99.0 4.2E-10 1.4E-14 126.8 8.5 163 489-655 99-310 (504)
207 2xtz_A Guanine nucleotide-bind 98.9 1.3E-09 4.5E-14 117.6 7.2 156 500-657 132-344 (354)
208 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 2E-08 6.8E-13 109.9 14.0 88 488-577 17-127 (392)
209 3ec1_A YQEH GTPase; atnos1, at 98.8 1.8E-10 6.3E-15 124.4 -3.4 111 491-608 162-288 (369)
210 1azs_C GS-alpha; complex (lyas 98.8 3.9E-09 1.3E-13 115.9 6.7 129 524-656 203-383 (402)
211 2ohf_A Protein OLA1, GTP-bindi 98.7 8.3E-09 2.8E-13 113.1 7.3 88 488-577 19-128 (396)
212 2yv5_A YJEQ protein; hydrolase 98.7 2.4E-08 8.3E-13 104.8 8.3 93 552-653 66-164 (302)
213 3h2y_A GTPase family protein; 98.6 4.2E-09 1.4E-13 113.8 0.9 112 491-609 160-288 (368)
214 3l82_B F-box only protein 4; T 98.5 1.4E-07 4.8E-12 95.9 8.7 99 551-654 111-219 (227)
215 2qag_B Septin-6, protein NEDD5 98.5 6.3E-08 2.2E-12 107.1 6.2 118 488-608 37-190 (427)
216 1tq4_A IIGP1, interferon-induc 98.5 1.2E-06 4.1E-11 96.5 15.2 164 486-656 64-251 (413)
217 3dm5_A SRP54, signal recogniti 98.4 6.7E-07 2.3E-11 99.4 10.1 144 490-647 99-280 (443)
218 3sop_A Neuronal-specific septi 98.4 6.8E-07 2.3E-11 92.6 8.4 113 492-608 3-154 (270)
219 3l2o_B F-box only protein 4; s 98.3 9.5E-07 3.2E-11 93.6 8.2 101 550-655 195-305 (312)
220 2v3c_C SRP54, signal recogniti 98.3 6.3E-07 2.2E-11 99.1 6.4 160 490-653 98-306 (432)
221 3kl4_A SRP54, signal recogniti 98.2 2.3E-06 7.7E-11 94.9 8.2 143 490-646 96-278 (433)
222 1puj_A YLQF, conserved hypothe 98.2 1.6E-06 5.5E-11 90.4 6.2 58 488-552 117-175 (282)
223 1puj_A YLQF, conserved hypothe 98.1 2.4E-06 8.2E-11 89.1 7.2 100 546-656 3-104 (282)
224 1f5n_A Interferon-induced guan 98.1 2.3E-06 7.8E-11 98.2 6.2 102 487-590 34-145 (592)
225 3h2y_A GTPase family protein; 98.1 2.8E-06 9.5E-11 91.8 5.8 97 551-655 55-157 (368)
226 3ec1_A YQEH GTPase; atnos1, at 98.0 4.2E-06 1.4E-10 90.4 6.7 97 551-655 57-159 (369)
227 1j8m_F SRP54, signal recogniti 98.0 1.4E-05 4.9E-10 83.9 8.5 143 491-648 98-281 (297)
228 3cnl_A YLQF, putative uncharac 97.8 9.4E-06 3.2E-10 83.7 4.2 56 492-554 100-156 (262)
229 3cnl_A YLQF, putative uncharac 97.7 1.1E-05 3.6E-10 83.4 2.4 92 549-654 4-97 (262)
230 3e70_C DPA, signal recognition 97.7 0.00012 4.1E-09 78.1 10.6 146 489-648 127-310 (328)
231 3szr_A Interferon-induced GTP- 97.5 0.0002 6.8E-09 82.2 9.0 66 543-608 148-228 (608)
232 2yhs_A FTSY, cell division pro 97.4 0.0007 2.4E-08 76.3 11.7 145 488-647 290-479 (503)
233 1rj9_A FTSY, signal recognitio 97.4 0.0011 3.7E-08 69.9 12.2 143 490-647 101-288 (304)
234 3e1y_E Eukaryotic peptide chai 97.2 0.00035 1.2E-08 69.7 6.4 64 666-732 4-69 (204)
235 2xxa_A Signal recognition part 97.2 0.00028 9.7E-09 78.0 5.8 65 540-607 182-253 (433)
236 1t9h_A YLOQ, probable GTPase E 97.2 0.00018 6.1E-09 76.3 3.7 82 561-651 82-170 (307)
237 1zu4_A FTSY; GTPase, signal re 97.1 0.0028 9.4E-08 67.3 12.2 93 540-647 190-295 (320)
238 3q5d_A Atlastin-1; G protein, 97.1 0.00071 2.4E-08 75.3 7.3 97 491-589 67-192 (447)
239 2px0_A Flagellar biosynthesis 97.0 0.0025 8.6E-08 66.8 10.9 130 488-621 102-265 (296)
240 1vma_A Cell division protein F 97.0 0.006 2E-07 64.4 13.4 93 541-648 186-291 (306)
241 4dzz_A Plasmid partitioning pr 96.7 0.0036 1.2E-07 59.9 8.3 79 541-622 75-158 (206)
242 2rcn_A Probable GTPase ENGC; Y 96.7 0.003 1E-07 68.3 8.5 86 561-652 126-213 (358)
243 1xe1_A Hypothetical protein PF 96.3 0.0094 3.2E-07 55.0 7.8 64 666-732 32-96 (116)
244 1bif_A 6-phosphofructo-2-kinas 96.3 0.00055 1.9E-08 75.8 -0.4 114 489-605 37-160 (469)
245 1ls1_A Signal recognition part 96.2 0.0074 2.5E-07 63.1 7.5 92 541-647 180-278 (295)
246 3cwq_A Para family chromosome 96.2 0.012 4E-07 57.9 8.5 81 540-622 66-149 (209)
247 2ffh_A Protein (FFH); SRP54, s 96.1 0.0058 2E-07 67.5 6.2 115 490-607 97-250 (425)
248 4ido_A Atlastin-1; GTPase, GTP 95.7 0.011 3.8E-07 65.9 6.2 97 492-590 68-193 (457)
249 1t9h_A YLOQ, probable GTPase E 95.1 0.0069 2.4E-07 64.2 2.0 24 491-514 173-196 (307)
250 2yv5_A YJEQ protein; hydrolase 95.0 0.033 1.1E-06 58.2 6.9 22 491-512 165-186 (302)
251 3end_A Light-independent proto 94.5 0.079 2.7E-06 54.5 8.1 65 541-606 156-225 (307)
252 2rcn_A Probable GTPase ENGC; Y 94.5 0.022 7.6E-07 61.6 4.1 25 491-515 215-239 (358)
253 1lvg_A Guanylate kinase, GMP k 93.6 0.032 1.1E-06 54.3 3.0 24 490-513 3-26 (198)
254 1kgd_A CASK, peripheral plasma 93.6 0.042 1.4E-06 52.3 3.7 25 490-514 4-28 (180)
255 3tau_A Guanylate kinase, GMP k 93.4 0.049 1.7E-06 53.2 3.9 28 487-514 4-31 (208)
256 3tr0_A Guanylate kinase, GMP k 93.4 0.049 1.7E-06 51.9 3.8 25 490-514 6-30 (205)
257 1u0l_A Probable GTPase ENGC; p 93.2 0.062 2.1E-06 55.9 4.4 25 491-515 169-193 (301)
258 1zp6_A Hypothetical protein AT 93.1 0.058 2E-06 51.0 3.7 26 489-514 7-32 (191)
259 1ye8_A Protein THEP1, hypothet 93.0 0.054 1.8E-06 52.3 3.4 22 493-514 2-23 (178)
260 2bbw_A Adenylate kinase 4, AK4 93.0 0.059 2E-06 53.7 3.8 26 487-512 23-48 (246)
261 3ney_A 55 kDa erythrocyte memb 92.9 0.059 2E-06 53.6 3.6 39 490-528 18-58 (197)
262 3c8u_A Fructokinase; YP_612366 92.8 0.052 1.8E-06 52.8 3.1 26 488-513 19-44 (208)
263 1znw_A Guanylate kinase, GMP k 92.8 0.064 2.2E-06 52.2 3.6 27 488-514 17-43 (207)
264 3zvl_A Bifunctional polynucleo 92.8 0.11 3.7E-06 56.7 5.8 26 488-513 255-280 (416)
265 2j41_A Guanylate kinase; GMP, 92.5 0.078 2.7E-06 50.5 3.8 26 489-514 4-29 (207)
266 1uf9_A TT1252 protein; P-loop, 92.4 0.076 2.6E-06 50.4 3.6 30 485-514 2-31 (203)
267 3a00_A Guanylate kinase, GMP k 92.4 0.063 2.1E-06 51.3 3.0 23 492-514 2-24 (186)
268 1s96_A Guanylate kinase, GMP k 92.4 0.077 2.6E-06 53.0 3.7 27 488-514 13-39 (219)
269 3bos_A Putative DNA replicatio 92.3 1.2 3.9E-05 42.8 11.9 24 490-513 51-74 (242)
270 3asz_A Uridine kinase; cytidin 92.3 0.075 2.6E-06 51.2 3.4 24 490-513 5-28 (211)
271 1z6g_A Guanylate kinase; struc 92.2 0.071 2.4E-06 52.7 3.2 26 489-514 21-46 (218)
272 1cke_A CK, MSSA, protein (cyti 92.1 0.094 3.2E-06 50.9 3.8 23 491-513 5-27 (227)
273 1kag_A SKI, shikimate kinase I 91.8 0.091 3.1E-06 48.8 3.2 23 491-513 4-26 (173)
274 4eun_A Thermoresistant glucoki 91.6 0.11 3.8E-06 50.1 3.7 25 489-513 27-51 (200)
275 2ph1_A Nucleotide-binding prot 91.5 0.23 7.7E-06 50.0 6.0 67 540-606 127-194 (262)
276 3t61_A Gluconokinase; PSI-biol 91.5 0.11 3.6E-06 50.0 3.4 27 487-513 14-40 (202)
277 2qor_A Guanylate kinase; phosp 91.5 0.11 3.8E-06 50.2 3.6 26 488-513 9-34 (204)
278 2c95_A Adenylate kinase 1; tra 91.4 0.11 3.6E-06 49.1 3.3 26 488-513 6-31 (196)
279 3lw7_A Adenylate kinase relate 91.2 0.12 4E-06 47.1 3.3 20 492-511 2-21 (179)
280 3uie_A Adenylyl-sulfate kinase 91.1 0.13 4.3E-06 49.7 3.5 27 487-513 21-47 (200)
281 3tif_A Uncharacterized ABC tra 90.8 0.13 4.6E-06 51.7 3.5 27 488-514 28-54 (235)
282 4gp7_A Metallophosphoesterase; 90.8 0.13 4.3E-06 48.8 3.1 23 490-512 8-30 (171)
283 1ex7_A Guanylate kinase; subst 90.8 0.11 3.8E-06 51.0 2.8 21 494-514 4-24 (186)
284 2v54_A DTMP kinase, thymidylat 90.7 0.17 5.7E-06 48.2 3.9 25 490-514 3-27 (204)
285 2rhm_A Putative kinase; P-loop 90.7 0.15 5.1E-06 48.0 3.5 24 490-513 4-27 (193)
286 1htw_A HI0065; nucleotide-bind 90.6 0.15 5.1E-06 48.5 3.4 27 489-515 31-57 (158)
287 2pcj_A ABC transporter, lipopr 90.5 0.15 5.2E-06 50.9 3.5 26 489-514 28-53 (224)
288 1ly1_A Polynucleotide kinase; 90.5 0.15 5E-06 47.3 3.2 22 492-513 3-24 (181)
289 1knq_A Gluconate kinase; ALFA/ 90.5 0.15 5.1E-06 47.6 3.3 24 490-513 7-30 (175)
290 3vaa_A Shikimate kinase, SK; s 90.3 0.17 5.8E-06 48.7 3.7 26 488-513 22-47 (199)
291 2bdt_A BH3686; alpha-beta prot 90.3 0.15 5.3E-06 48.2 3.2 21 493-513 4-24 (189)
292 2cbz_A Multidrug resistance-as 90.2 0.16 5.5E-06 51.2 3.5 27 488-514 28-54 (237)
293 3kb2_A SPBC2 prophage-derived 90.2 0.16 5.4E-06 46.7 3.2 21 493-513 3-23 (173)
294 1b0u_A Histidine permease; ABC 90.1 0.17 5.7E-06 51.9 3.6 27 488-514 29-55 (262)
295 3aez_A Pantothenate kinase; tr 90.1 0.16 5.5E-06 53.5 3.5 26 488-513 87-112 (312)
296 1np6_A Molybdopterin-guanine d 90.1 0.18 6.3E-06 48.7 3.7 24 491-514 6-29 (174)
297 2wwf_A Thymidilate kinase, put 90.0 0.19 6.6E-06 48.0 3.8 25 489-513 8-32 (212)
298 1nn5_A Similar to deoxythymidy 90.0 0.21 7.2E-06 47.8 4.0 25 489-513 7-31 (215)
299 2qt1_A Nicotinamide riboside k 90.0 0.2 6.7E-06 48.3 3.8 27 488-514 18-44 (207)
300 1kht_A Adenylate kinase; phosp 90.0 0.18 6.3E-06 47.1 3.4 23 491-513 3-25 (192)
301 2onk_A Molybdate/tungstate ABC 89.8 0.18 6E-06 51.2 3.4 23 492-514 25-47 (240)
302 1mv5_A LMRA, multidrug resista 89.8 0.17 5.7E-06 51.1 3.2 27 488-514 25-51 (243)
303 2v9p_A Replication protein E1; 89.8 0.19 6.6E-06 53.1 3.8 27 487-513 122-148 (305)
304 2ehv_A Hypothetical protein PH 89.8 0.18 6.2E-06 49.2 3.4 25 488-512 27-51 (251)
305 2pze_A Cystic fibrosis transme 89.8 0.18 6.2E-06 50.5 3.4 26 489-514 32-57 (229)
306 3lnc_A Guanylate kinase, GMP k 89.7 0.13 4.6E-06 50.5 2.4 27 488-514 24-51 (231)
307 3trf_A Shikimate kinase, SK; a 89.7 0.19 6.6E-06 47.2 3.4 23 491-513 5-27 (185)
308 2ghi_A Transport protein; mult 89.7 0.19 6.4E-06 51.5 3.5 27 488-514 43-69 (260)
309 2jeo_A Uridine-cytidine kinase 89.7 0.18 6.2E-06 50.3 3.4 26 488-513 22-47 (245)
310 1g6h_A High-affinity branched- 89.6 0.19 6.3E-06 51.3 3.4 27 488-514 30-56 (257)
311 3cm0_A Adenylate kinase; ATP-b 89.6 0.16 5.5E-06 47.7 2.7 24 490-513 3-26 (186)
312 2if2_A Dephospho-COA kinase; a 89.5 0.21 7.2E-06 47.8 3.5 22 492-513 2-23 (204)
313 4a74_A DNA repair and recombin 89.5 0.2 6.8E-06 48.3 3.4 26 488-513 22-47 (231)
314 2zu0_C Probable ATP-dependent 89.5 0.22 7.6E-06 51.1 3.9 27 488-514 43-69 (267)
315 2olj_A Amino acid ABC transpor 89.4 0.2 6.9E-06 51.5 3.6 27 488-514 47-73 (263)
316 2d2e_A SUFC protein; ABC-ATPas 89.3 0.22 7.5E-06 50.5 3.7 26 489-514 27-52 (250)
317 4e22_A Cytidylate kinase; P-lo 89.3 0.23 7.8E-06 50.1 3.8 26 487-512 23-48 (252)
318 2ff7_A Alpha-hemolysin translo 89.3 0.2 6.8E-06 50.9 3.4 27 488-514 32-58 (247)
319 2jaq_A Deoxyguanosine kinase; 89.3 0.21 7.3E-06 47.1 3.4 21 493-513 2-22 (205)
320 2ixe_A Antigen peptide transpo 89.3 0.21 7.2E-06 51.5 3.5 27 488-514 42-68 (271)
321 1vpl_A ABC transporter, ATP-bi 89.2 0.22 7.5E-06 51.0 3.6 27 488-514 38-64 (256)
322 2plr_A DTMP kinase, probable t 89.2 0.21 7.1E-06 47.5 3.2 24 490-513 3-26 (213)
323 1ji0_A ABC transporter; ATP bi 89.2 0.21 7.2E-06 50.4 3.4 26 489-514 30-55 (240)
324 1rz3_A Hypothetical protein rb 89.1 0.23 7.9E-06 48.0 3.5 26 488-513 19-44 (201)
325 1nks_A Adenylate kinase; therm 89.1 0.23 7.8E-06 46.4 3.4 21 493-513 3-23 (194)
326 1qhx_A CPT, protein (chloramph 89.1 0.24 8.1E-06 46.2 3.5 23 491-513 3-25 (178)
327 3gfo_A Cobalt import ATP-bindi 89.1 0.22 7.4E-06 51.7 3.5 27 488-514 31-57 (275)
328 4g1u_C Hemin import ATP-bindin 89.1 0.21 7.2E-06 51.3 3.4 27 488-514 34-60 (266)
329 3b85_A Phosphate starvation-in 89.0 0.17 6E-06 50.1 2.6 25 490-514 21-45 (208)
330 2yz2_A Putative ABC transporte 88.9 0.23 7.8E-06 50.9 3.5 27 488-514 30-56 (266)
331 3ec2_A DNA replication protein 88.9 0.2 6.9E-06 47.1 2.9 25 490-514 37-61 (180)
332 2orw_A Thymidine kinase; TMTK, 88.9 2.4 8.2E-05 40.8 10.6 40 567-606 76-115 (184)
333 1y63_A LMAJ004144AAA protein; 88.9 0.26 9E-06 46.9 3.7 26 489-514 8-33 (184)
334 1sgw_A Putative ABC transporte 88.9 0.2 7E-06 50.0 3.0 26 489-514 33-58 (214)
335 1tev_A UMP-CMP kinase; ploop, 88.8 0.23 8E-06 46.4 3.2 23 491-513 3-25 (196)
336 2i3b_A HCR-ntpase, human cance 88.7 0.22 7.4E-06 48.7 3.0 21 493-513 3-23 (189)
337 1aky_A Adenylate kinase; ATP:A 88.7 0.26 8.9E-06 48.0 3.6 24 490-513 3-26 (220)
338 1zd8_A GTP:AMP phosphotransfer 88.7 0.26 8.9E-06 48.3 3.6 24 489-512 5-28 (227)
339 2eyu_A Twitching motility prot 88.7 0.24 8.1E-06 50.8 3.4 25 489-513 23-47 (261)
340 2qi9_C Vitamin B12 import ATP- 88.6 0.24 8.2E-06 50.5 3.4 27 488-514 23-49 (249)
341 3iij_A Coilin-interacting nucl 88.6 0.26 8.8E-06 46.3 3.4 25 489-513 9-33 (180)
342 2ihy_A ABC transporter, ATP-bi 88.5 0.24 8.4E-06 51.3 3.4 27 488-514 44-70 (279)
343 1sq5_A Pantothenate kinase; P- 88.5 0.26 8.8E-06 51.4 3.6 25 489-513 78-102 (308)
344 3b9q_A Chloroplast SRP recepto 88.4 0.19 6.5E-06 52.7 2.5 129 489-621 98-272 (302)
345 2yvu_A Probable adenylyl-sulfa 88.3 0.3 1E-05 46.2 3.6 25 489-513 11-35 (186)
346 2cdn_A Adenylate kinase; phosp 88.2 0.31 1E-05 46.7 3.7 26 488-513 17-42 (201)
347 1zak_A Adenylate kinase; ATP:A 88.2 0.28 9.5E-06 47.8 3.4 24 490-513 4-27 (222)
348 2nq2_C Hypothetical ABC transp 88.1 0.27 9.1E-06 50.2 3.4 26 489-514 29-54 (253)
349 1jjv_A Dephospho-COA kinase; P 88.1 0.27 9.1E-06 47.2 3.2 22 492-513 3-24 (206)
350 1vht_A Dephospho-COA kinase; s 88.1 0.28 9.6E-06 47.6 3.4 24 490-513 3-26 (218)
351 2bbs_A Cystic fibrosis transme 88.0 0.29 1E-05 51.1 3.7 27 488-514 61-87 (290)
352 2bwj_A Adenylate kinase 5; pho 87.9 0.33 1.1E-05 45.8 3.6 23 491-513 12-34 (199)
353 2f1r_A Molybdopterin-guanine d 87.9 0.16 5.6E-06 48.9 1.5 22 492-513 3-24 (171)
354 3tqc_A Pantothenate kinase; bi 87.6 0.3 1E-05 51.9 3.5 26 488-513 89-114 (321)
355 1xjc_A MOBB protein homolog; s 87.6 0.34 1.2E-05 46.9 3.6 23 491-513 4-26 (169)
356 1odf_A YGR205W, hypothetical 3 87.5 0.3 1E-05 50.9 3.4 25 489-513 29-53 (290)
357 1sxj_A Activator 1 95 kDa subu 87.5 1.5 5.2E-05 48.8 9.3 24 491-514 77-100 (516)
358 3fb4_A Adenylate kinase; psych 87.4 0.31 1.1E-05 47.0 3.3 21 493-513 2-22 (216)
359 1jbk_A CLPB protein; beta barr 87.3 0.39 1.3E-05 43.9 3.7 25 490-514 42-66 (195)
360 1ukz_A Uridylate kinase; trans 87.3 0.36 1.2E-05 46.1 3.6 25 489-513 13-37 (203)
361 3tlx_A Adenylate kinase 2; str 87.3 0.34 1.2E-05 48.6 3.5 26 488-513 26-51 (243)
362 2pez_A Bifunctional 3'-phospho 87.2 0.33 1.1E-05 45.6 3.2 24 490-513 4-27 (179)
363 2b8t_A Thymidine kinase; deoxy 87.2 0.81 2.8E-05 46.1 6.2 40 567-606 89-128 (223)
364 2pjz_A Hypothetical protein ST 87.2 0.3 1E-05 50.3 3.1 25 491-515 30-54 (263)
365 2vli_A Antibiotic resistance p 87.1 0.27 9.1E-06 45.9 2.4 24 490-513 4-27 (183)
366 2vp4_A Deoxynucleoside kinase; 87.0 0.26 8.8E-06 48.8 2.4 26 489-514 18-43 (230)
367 3nh6_A ATP-binding cassette SU 87.0 0.23 8E-06 52.4 2.2 27 488-514 77-103 (306)
368 3bfv_A CAPA1, CAPB2, membrane 86.9 0.58 2E-05 48.0 5.0 66 541-607 191-257 (271)
369 3dl0_A Adenylate kinase; phosp 86.9 0.35 1.2E-05 46.7 3.3 21 493-513 2-22 (216)
370 2kjq_A DNAA-related protein; s 86.9 0.31 1.1E-05 45.5 2.8 25 490-514 35-59 (149)
371 1lw7_A Transcriptional regulat 86.7 0.28 9.6E-06 52.1 2.7 24 491-514 170-193 (365)
372 3kta_A Chromosome segregation 86.7 0.47 1.6E-05 44.5 3.9 22 492-513 27-48 (182)
373 2gza_A Type IV secretion syste 86.7 0.34 1.2E-05 51.8 3.3 27 488-514 172-198 (361)
374 1nij_A Hypothetical protein YJ 86.6 0.27 9.4E-06 51.4 2.5 25 490-514 3-27 (318)
375 2w0m_A SSO2452; RECA, SSPF, un 86.5 0.43 1.5E-05 45.7 3.7 25 489-513 21-45 (235)
376 3a4m_A L-seryl-tRNA(SEC) kinas 86.5 0.37 1.3E-05 48.7 3.2 24 490-513 3-26 (260)
377 2og2_A Putative signal recogni 86.4 0.23 7.9E-06 53.6 1.8 24 489-512 155-178 (359)
378 3fvq_A Fe(3+) IONS import ATP- 86.4 0.44 1.5E-05 51.5 4.0 27 488-514 27-53 (359)
379 3tui_C Methionine import ATP-b 86.3 0.44 1.5E-05 51.7 3.9 27 488-514 51-77 (366)
380 1qf9_A UMP/CMP kinase, protein 86.3 0.45 1.5E-05 44.3 3.6 23 491-513 6-28 (194)
381 1ak2_A Adenylate kinase isoenz 86.2 0.46 1.6E-05 46.9 3.8 27 487-513 12-38 (233)
382 3r20_A Cytidylate kinase; stru 86.1 0.42 1.4E-05 48.6 3.5 26 487-512 5-30 (233)
383 1gtv_A TMK, thymidylate kinase 86.1 0.21 7.2E-06 47.8 1.2 21 493-513 2-22 (214)
384 2yyz_A Sugar ABC transporter, 86.0 0.46 1.6E-05 51.3 3.8 27 488-514 26-52 (359)
385 2iyv_A Shikimate kinase, SK; t 86.0 0.37 1.3E-05 45.2 2.8 22 492-513 3-24 (184)
386 2npi_A Protein CLP1; CLP1-PCF1 86.0 0.4 1.4E-05 53.3 3.5 27 488-514 135-161 (460)
387 2it1_A 362AA long hypothetical 85.9 0.47 1.6E-05 51.3 3.9 27 488-514 26-52 (362)
388 3be4_A Adenylate kinase; malar 85.8 0.45 1.6E-05 46.4 3.4 23 491-513 5-27 (217)
389 1wcv_1 SOJ, segregation protei 85.7 1.1 3.7E-05 44.8 6.2 78 540-619 110-194 (257)
390 1v43_A Sugar-binding transport 85.6 0.49 1.7E-05 51.3 3.9 27 488-514 34-60 (372)
391 2pbr_A DTMP kinase, thymidylat 85.6 0.47 1.6E-05 44.4 3.3 21 493-513 2-22 (195)
392 3jvv_A Twitching mobility prot 85.6 0.41 1.4E-05 51.5 3.2 22 492-513 124-145 (356)
393 1e4v_A Adenylate kinase; trans 85.6 0.48 1.7E-05 45.9 3.5 21 493-513 2-22 (214)
394 2pt5_A Shikimate kinase, SK; a 85.5 0.47 1.6E-05 43.7 3.2 21 493-513 2-22 (168)
395 2cvh_A DNA repair and recombin 85.4 0.59 2E-05 44.7 3.9 26 488-513 17-42 (220)
396 1z47_A CYSA, putative ABC-tran 85.2 0.5 1.7E-05 50.9 3.7 26 489-514 39-64 (355)
397 1via_A Shikimate kinase; struc 85.2 0.42 1.4E-05 44.7 2.7 21 493-513 6-26 (175)
398 3rlf_A Maltose/maltodextrin im 85.2 0.53 1.8E-05 51.3 3.9 27 488-514 26-52 (381)
399 1ixz_A ATP-dependent metallopr 85.1 0.45 1.5E-05 47.3 3.0 22 493-514 51-72 (254)
400 2z0h_A DTMP kinase, thymidylat 85.1 0.51 1.8E-05 44.4 3.3 21 493-513 2-22 (197)
401 1m7g_A Adenylylsulfate kinase; 85.0 0.52 1.8E-05 45.7 3.4 26 488-513 22-47 (211)
402 2pt7_A CAG-ALFA; ATPase, prote 85.0 0.4 1.4E-05 50.8 2.8 26 489-514 169-194 (330)
403 1cr0_A DNA primase/helicase; R 85.0 0.59 2E-05 47.6 4.0 26 488-513 32-57 (296)
404 1g29_1 MALK, maltose transport 84.9 0.53 1.8E-05 51.0 3.7 26 489-514 27-52 (372)
405 1gvn_B Zeta; postsegregational 84.8 0.46 1.6E-05 49.1 3.1 25 489-513 31-55 (287)
406 2oap_1 GSPE-2, type II secreti 84.7 0.48 1.6E-05 53.4 3.3 26 489-514 258-283 (511)
407 2ewv_A Twitching motility prot 84.6 0.49 1.7E-05 50.9 3.3 25 489-513 134-158 (372)
408 3cio_A ETK, tyrosine-protein k 84.6 1.3 4.3E-05 46.1 6.3 66 541-607 213-279 (299)
409 4eaq_A DTMP kinase, thymidylat 84.6 0.57 1.9E-05 46.8 3.5 25 489-513 24-48 (229)
410 3gd7_A Fusion complex of cysti 84.5 0.61 2.1E-05 50.9 4.0 27 488-514 44-70 (390)
411 3kjh_A CO dehydrogenase/acetyl 84.5 0.55 1.9E-05 45.6 3.3 63 542-606 132-195 (254)
412 1e6c_A Shikimate kinase; phosp 84.4 0.5 1.7E-05 43.6 2.8 22 492-513 3-24 (173)
413 2p65_A Hypothetical protein PF 84.1 0.5 1.7E-05 43.3 2.7 24 490-513 42-65 (187)
414 3d31_A Sulfate/molybdate ABC t 84.1 0.44 1.5E-05 51.2 2.6 27 488-514 23-49 (348)
415 2p5t_B PEZT; postsegregational 84.0 0.4 1.4E-05 48.2 2.2 26 488-513 29-54 (253)
416 1uj2_A Uridine-cytidine kinase 83.9 0.56 1.9E-05 46.9 3.2 25 489-513 20-44 (252)
417 2f6r_A COA synthase, bifunctio 83.8 0.63 2.2E-05 47.8 3.6 25 488-512 72-96 (281)
418 3k9g_A PF-32 protein; ssgcid, 83.8 1.3 4.4E-05 44.3 5.8 76 541-619 144-221 (267)
419 1n0w_A DNA repair protein RAD5 83.8 0.7 2.4E-05 44.9 3.7 26 488-513 21-46 (243)
420 2x8a_A Nuclear valosin-contain 83.7 0.53 1.8E-05 48.3 2.9 20 494-513 47-66 (274)
421 2obl_A ESCN; ATPase, hydrolase 83.7 0.66 2.3E-05 49.6 3.8 27 488-514 68-94 (347)
422 3umf_A Adenylate kinase; rossm 83.5 0.67 2.3E-05 46.5 3.5 26 488-513 26-51 (217)
423 1f2t_A RAD50 ABC-ATPase; DNA d 83.2 0.66 2.2E-05 43.3 3.1 22 491-512 23-44 (149)
424 1iy2_A ATP-dependent metallopr 83.2 0.6 2E-05 47.3 3.0 22 493-514 75-96 (278)
425 1oxx_K GLCV, glucose, ABC tran 82.9 0.42 1.4E-05 51.4 1.9 27 488-514 28-54 (353)
426 1q3t_A Cytidylate kinase; nucl 82.7 0.82 2.8E-05 45.2 3.8 26 488-513 13-38 (236)
427 1p9r_A General secretion pathw 82.7 0.63 2.1E-05 51.1 3.2 24 490-513 166-189 (418)
428 2xb4_A Adenylate kinase; ATP-b 82.6 0.71 2.4E-05 45.3 3.3 21 493-513 2-22 (223)
429 1in4_A RUVB, holliday junction 82.5 0.69 2.4E-05 48.5 3.3 23 492-514 52-74 (334)
430 2w58_A DNAI, primosome compone 82.4 0.81 2.8E-05 43.6 3.5 22 492-513 55-76 (202)
431 3e2i_A Thymidine kinase; Zn-bi 82.3 4.1 0.00014 41.2 8.8 37 570-606 104-140 (219)
432 3b60_A Lipid A export ATP-bind 82.3 0.74 2.5E-05 52.2 3.7 27 488-514 366-392 (582)
433 2ze6_A Isopentenyl transferase 82.2 0.74 2.5E-05 46.5 3.3 21 493-513 3-23 (253)
434 3pfi_A Holliday junction ATP-d 82.0 2.7 9.3E-05 43.2 7.5 24 490-513 54-77 (338)
435 3nwj_A ATSK2; P loop, shikimat 81.9 0.71 2.4E-05 47.1 3.1 23 491-513 48-70 (250)
436 1zuh_A Shikimate kinase; alpha 81.8 0.81 2.8E-05 42.3 3.1 23 491-513 7-29 (168)
437 3sr0_A Adenylate kinase; phosp 81.7 0.82 2.8E-05 45.2 3.3 21 493-513 2-22 (206)
438 2dpy_A FLII, flagellum-specifi 81.5 0.86 3E-05 50.3 3.8 27 488-514 154-180 (438)
439 3b5x_A Lipid A export ATP-bind 81.5 0.82 2.8E-05 51.8 3.7 27 488-514 366-392 (582)
440 1njg_A DNA polymerase III subu 81.5 0.92 3.1E-05 42.8 3.5 22 492-513 46-67 (250)
441 2oze_A ORF delta'; para, walke 81.5 1.7 5.8E-05 44.1 5.7 66 541-608 154-226 (298)
442 1yqt_A RNAse L inhibitor; ATP- 81.4 0.92 3.1E-05 51.3 4.0 27 488-514 44-70 (538)
443 2chg_A Replication factor C sm 81.3 0.87 3E-05 42.6 3.2 22 492-513 39-60 (226)
444 1byi_A Dethiobiotin synthase; 81.2 3.5 0.00012 39.7 7.6 80 541-620 108-193 (224)
445 1g3q_A MIND ATPase, cell divis 81.2 0.96 3.3E-05 44.0 3.6 65 541-607 111-176 (237)
446 1lv7_A FTSH; alpha/beta domain 81.2 1 3.4E-05 44.8 3.8 23 491-513 45-67 (257)
447 3ea0_A ATPase, para family; al 81.1 1.7 5.8E-05 42.3 5.3 66 541-608 118-186 (245)
448 3ake_A Cytidylate kinase; CMP 81.0 0.98 3.3E-05 42.8 3.5 21 493-513 4-24 (208)
449 2ocp_A DGK, deoxyguanosine kin 80.8 0.95 3.2E-05 44.8 3.5 24 491-514 2-25 (241)
450 3la6_A Tyrosine-protein kinase 80.7 1.9 6.4E-05 44.7 5.8 66 541-607 201-267 (286)
451 1p5z_B DCK, deoxycytidine kina 80.5 0.57 2E-05 47.1 1.8 28 487-514 20-47 (263)
452 1ltq_A Polynucleotide kinase; 80.5 0.9 3.1E-05 46.1 3.2 22 492-513 3-24 (301)
453 2yl4_A ATP-binding cassette SU 80.4 0.73 2.5E-05 52.4 2.8 27 488-514 367-393 (595)
454 1a7j_A Phosphoribulokinase; tr 80.4 0.59 2E-05 48.5 1.9 25 489-513 3-27 (290)
455 1svm_A Large T antigen; AAA+ f 80.3 1 3.6E-05 48.8 3.8 26 488-513 166-191 (377)
456 3q9l_A Septum site-determining 80.1 0.8 2.7E-05 45.1 2.6 64 541-606 113-185 (260)
457 3qf7_A RAD50; ABC-ATPase, ATPa 80.1 0.88 3E-05 48.7 3.1 20 493-512 25-44 (365)
458 3ozx_A RNAse L inhibitor; ATP 80.1 0.9 3.1E-05 51.4 3.4 26 489-514 23-48 (538)
459 2axn_A 6-phosphofructo-2-kinas 80.0 0.27 9.2E-06 55.4 -0.9 39 567-605 118-156 (520)
460 1nlf_A Regulatory protein REPA 80.0 1.2 3.9E-05 45.2 3.8 25 489-513 28-52 (279)
461 3euj_A Chromosome partition pr 79.9 0.91 3.1E-05 50.9 3.3 22 492-513 30-51 (483)
462 1pzn_A RAD51, DNA repair and r 79.8 2.8 9.5E-05 44.6 6.9 27 488-514 128-154 (349)
463 2qby_A CDC6 homolog 1, cell di 79.8 1.1 3.7E-05 46.2 3.6 25 489-513 43-67 (386)
464 3qf4_B Uncharacterized ABC tra 79.8 0.85 2.9E-05 52.0 3.0 27 488-514 378-404 (598)
465 3j16_B RLI1P; ribosome recycli 79.6 1.2 3.9E-05 51.4 4.1 27 488-514 100-126 (608)
466 2dr3_A UPF0273 protein PH0284; 78.9 1.4 4.7E-05 42.8 3.9 25 488-512 20-44 (247)
467 1fnn_A CDC6P, cell division co 78.9 1.2 4E-05 46.3 3.5 22 492-513 45-66 (389)
468 2qz4_A Paraplegin; AAA+, SPG7, 78.8 1.4 4.6E-05 43.4 3.8 25 489-513 37-61 (262)
469 3h4m_A Proteasome-activating n 78.8 1.3 4.6E-05 44.3 3.8 25 489-513 49-73 (285)
470 1hyq_A MIND, cell division inh 78.4 1.1 3.7E-05 44.5 3.0 65 541-607 110-175 (263)
471 4a82_A Cystic fibrosis transme 78.1 0.76 2.6E-05 52.1 2.0 27 488-514 364-390 (578)
472 1g7s_A Translation initiation 77.9 10 0.00035 43.5 11.2 63 668-732 463-529 (594)
473 3b9p_A CG5977-PA, isoform A; A 77.9 1.5 5.2E-05 44.3 4.0 25 489-513 52-76 (297)
474 3bk7_A ABC transporter ATP-bin 77.9 1.3 4.3E-05 51.0 3.7 27 488-514 114-140 (607)
475 3tmk_A Thymidylate kinase; pho 77.8 1.6 5.6E-05 43.6 4.1 25 489-513 3-27 (216)
476 3qf4_A ABC transporter, ATP-bi 77.5 0.92 3.2E-05 51.6 2.4 27 488-514 366-392 (587)
477 2h92_A Cytidylate kinase; ross 77.4 1.3 4.3E-05 42.8 3.0 23 491-513 3-25 (219)
478 1xx6_A Thymidine kinase; NESG, 77.4 6.4 0.00022 38.4 8.2 37 570-606 84-120 (191)
479 3syl_A Protein CBBX; photosynt 77.1 1.7 5.7E-05 44.1 4.0 24 490-513 66-89 (309)
480 3t15_A Ribulose bisphosphate c 77.1 1.7 5.8E-05 44.8 4.1 24 490-513 35-58 (293)
481 3qks_A DNA double-strand break 77.1 1.3 4.5E-05 43.2 3.1 22 491-512 23-44 (203)
482 1yqt_A RNAse L inhibitor; ATP- 77.1 1.3 4.3E-05 50.1 3.4 27 489-515 310-336 (538)
483 1sxj_E Activator 1 40 kDa subu 76.9 1.2 4E-05 46.1 2.8 22 492-513 37-58 (354)
484 1hqc_A RUVB; extended AAA-ATPa 76.7 3.5 0.00012 41.9 6.3 23 491-513 38-60 (324)
485 3n70_A Transport activator; si 76.7 1.6 5.5E-05 39.9 3.4 26 489-514 22-47 (145)
486 1ofh_A ATP-dependent HSL prote 76.5 1.5 5.1E-05 44.1 3.4 24 490-513 49-72 (310)
487 3ozx_A RNAse L inhibitor; ATP 76.1 1.3 4.4E-05 50.2 3.1 26 489-514 292-317 (538)
488 2vhj_A Ntpase P4, P4; non- hyd 75.8 2.7 9.1E-05 45.1 5.2 23 492-514 124-146 (331)
489 4he6_A Peptidase family U32; u 75.7 3.5 0.00012 35.5 5.1 60 669-732 8-73 (89)
490 2grj_A Dephospho-COA kinase; T 75.4 1.4 4.9E-05 43.0 2.8 25 490-514 11-35 (192)
491 1l8q_A Chromosomal replication 75.3 1.5 5.1E-05 45.1 3.1 24 490-513 36-59 (324)
492 3bk7_A ABC transporter ATP-bin 75.3 1.5 5.1E-05 50.4 3.4 27 489-515 380-406 (607)
493 3cf0_A Transitional endoplasmi 75.0 1.9 6.6E-05 44.3 3.9 25 489-513 47-71 (301)
494 1zcb_A G alpha I/13; GTP-bindi 74.9 1.6 5.5E-05 46.9 3.3 25 488-512 30-54 (362)
495 3v9p_A DTMP kinase, thymidylat 74.8 1.5 5.3E-05 44.1 3.0 26 488-513 22-47 (227)
496 2xj4_A MIPZ; replication, cell 74.5 3.2 0.00011 42.2 5.3 78 541-620 103-205 (286)
497 4aby_A DNA repair protein RECN 74.5 0.73 2.5E-05 49.2 0.5 23 489-512 59-81 (415)
498 2v1u_A Cell division control p 74.2 1.5 5.3E-05 45.1 2.9 25 489-513 42-66 (387)
499 1zo1_I IF2, translation initia 74.1 5.6 0.00019 44.7 7.6 86 646-732 385-476 (501)
500 2qby_B CDC6 homolog 3, cell di 73.5 2.3 7.8E-05 44.2 4.0 24 490-513 44-67 (384)
No 1
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=1.7e-38 Score=358.94 Aligned_cols=241 Identities=57% Similarity=0.879 Sum_probs=222.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
+++++|+|+|++|||||||+++|++..+...+.+++|+++..+.+.+. .+..++|||||||+.|..++.+++..+|+
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~---~g~~i~~iDTPGhe~f~~~~~~~~~~aD~ 78 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP---SGEKITFLDTPGHAAFSAMRARGTQVTDI 78 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS---CSSCCBCEECSSSCCTTTSBBSSSBSBSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC---CCCEEEEEECCChHHHHHHHHHHHccCCE
Confidence 478999999999999999999999988887888999999988776532 23479999999999999999999999999
Q ss_pred EEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHH
Q 004746 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (732)
Q Consensus 569 VILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeL 648 (732)
+|||||++++.++++.+++.++...++|+|+|+||+|+.+.+.+.+..++..+++....|++.++++++||++|.||++|
T Consensus 79 vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 79 VILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp CEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred EEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 99999999999999999999999999999999999999877666666777777777888888899999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcCeeEEEEEEEcCCCCccceecCCC
Q 004746 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSI 728 (732)
Q Consensus 649 fe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~~gkVrsI~~~~g~~V~~A~pG~ 728 (732)
+++|..+.+..++..+++.++.+.|++++.++++|++++++|.+|+|++||.+++|..+++||+|++++|+.+++|.||+
T Consensus 159 le~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g~~~~kVr~i~~~~g~~v~~A~~G~ 238 (537)
T 3izy_P 159 AEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLMFDENGRAVNEAYPSM 238 (537)
T ss_dssp HHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECCSSCCEEEEEEEECCCCCSCCSCCST
T ss_pred HHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEeCCceEEEEEEEcCCCCCCcEEcCCC
Confidence 99999988888888889999999999999999999999999999999999999999999999999999899999999999
Q ss_pred CeeC
Q 004746 729 PVQV 732 (732)
Q Consensus 729 ~V~I 732 (732)
+|.|
T Consensus 239 ~V~i 242 (537)
T 3izy_P 239 PVGI 242 (537)
T ss_dssp TCCC
T ss_pred EEEE
Confidence 9976
No 2
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=4.6e-38 Score=352.87 Aligned_cols=240 Identities=60% Similarity=0.940 Sum_probs=215.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.|+++|+|+||+|||||||+++|++..+...+.+|+|+++..+.+.+ .+..++|||||||++|..++.+++..+|+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~----~~~~i~~iDTPGhe~f~~~~~~~~~~aD~ 77 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET----ENGMITFLDTPGHAAFTSMRARGAQATDI 77 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT----TSSCCCEECCCTTTCCTTSBCSSSBSCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE----CCEEEEEEECCCcHHHHHHHHHHHhhCCE
Confidence 57899999999999999999999987777778889999988776432 34579999999999999999999999999
Q ss_pred EEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHH
Q 004746 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (732)
Q Consensus 569 VILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeL 648 (732)
+|||||++++.++|+.+++.++...++|+|+++||+|+...+.+++..++...++..+.|++.++++++||++|.||++|
T Consensus 78 aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL 157 (501)
T 1zo1_I 78 VVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL 157 (501)
T ss_dssp EEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred EEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence 99999999999999999999999999999999999999876655555555555666677777899999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcCeeEEEEEEEcCCCCccceecCCC
Q 004746 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSI 728 (732)
Q Consensus 649 fe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~~~gkVrsI~~~~g~~V~~A~pG~ 728 (732)
+++|...+++..+..+++.++.+.|++++.++++|++++++|++|+|++||.|++|+.+++||+|++.+|..+++|+||+
T Consensus 158 le~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~~~~kVr~i~~~~g~~v~~a~~g~ 237 (501)
T 1zo1_I 158 LDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSI 237 (501)
T ss_dssp HHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEBSSCEEEEECCTTTTSEEEECCSS
T ss_pred hhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEccceeEEEEEEecCCCcCcEeccCC
Confidence 99998766666777888899999999999999999999999999999999999999999999999988899999999999
Q ss_pred CeeC
Q 004746 729 PVQV 732 (732)
Q Consensus 729 ~V~I 732 (732)
+|.|
T Consensus 238 ~V~i 241 (501)
T 1zo1_I 238 PVEI 241 (501)
T ss_dssp CSSS
T ss_pred cEEE
Confidence 9975
No 3
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.97 E-value=5.6e-32 Score=309.19 Aligned_cols=242 Identities=36% Similarity=0.612 Sum_probs=192.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeec--------------CCcceeEEEEeCCCccc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV--------------DGKLQPCVFLDTPGHEA 554 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~i--------------dgk~i~ItLIDTPGhE~ 554 (732)
.+.++|+|+||+|||||||+++|++..+...+.+++|++++.+.+.... +.....++|||||||++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 4678999999999999999999998766555566889888777665321 01112599999999999
Q ss_pred cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC-Ch--------------H-------
Q 004746 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NP--------------E------- 612 (732)
Q Consensus 555 f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a-~~--------------e------- 612 (732)
|..++.+++..+|++|||||+++++++++.+.+.+++..++|+|+|+||+|+... .. +
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~ 162 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD 162 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999532 11 1
Q ss_pred ----HHHHHHHHcCCCCC------CCCCCCCEEEEecCCCCCHHHHHHHHHHHHhh-h--hhccCCCCCccceEEEEeec
Q 004746 613 ----RVMQELSSIGLMPE------DWGGDIPMVQISALKGEKVDDLLETIMLVAEL-Q--ELKANPHRNAKGTVIEAGLH 679 (732)
Q Consensus 613 ----rv~~eL~elgl~~e------~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael-~--~lk~~p~r~a~g~Vies~~d 679 (732)
++..++.+.++..+ .++..++++++||++|.||++|+++|..+... . .+..+++.++.+.|+++..+
T Consensus 163 e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d 242 (594)
T 1g7s_A 163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEE 242 (594)
T ss_dssp HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccchhhhccccCCCceeEEEEEEEe
Confidence 12233444444322 23456799999999999999999999876542 2 45667889999999999999
Q ss_pred cCCCceEEEEEEeeEEecCCEEEEcCeeE----EEEEEEcC-----------CCCccceecCCCCe
Q 004746 680 KSKGPVATFILQNGTLKKGDVVVCGEAFG----KVRALFDD-----------SGNRVDEAGPSIPV 730 (732)
Q Consensus 680 kgrG~VatglV~~GtLk~GD~Iv~G~~~g----kVrsI~~~-----------~g~~V~~A~pG~~V 730 (732)
++.|.+++++|.+|+|+.||.|++++..+ +|++|+.. ++..+++|.|+..+
T Consensus 243 ~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~ 308 (594)
T 1g7s_A 243 TGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGI 308 (594)
T ss_dssp TTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEE
T ss_pred CCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCc
Confidence 99999999999999999999999976544 99999752 34568888865554
No 4
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.97 E-value=5.8e-30 Score=278.74 Aligned_cols=238 Identities=26% Similarity=0.355 Sum_probs=174.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC---CccccccCCceeeeeeEEEEeec-------------C--Cc----ceeEEEE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT---KVAAAEAGGITQGIGAYKVQVPV-------------D--GK----LQPCVFL 547 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~---k~~vse~~GtTrdI~~y~v~i~i-------------d--gk----~i~ItLI 547 (732)
..++|+++||+|||||||+++|++. .+.....+|+|+++++....+.. . +. ...++||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 3578999999999999999999854 33345567899988766554421 1 11 2689999
Q ss_pred eCCCccccchhhcccccccCeEEEEEEecCCC-ChhhHHHHHHHHhcCC-CEEEEEeCCCCCCCCh-HHHHHHHHHcCCC
Q 004746 548 DTPGHEAFGAMRARGARVTDIAVIVVAADDGI-RPQTNEAIAHAKAAGV-PIVIAINKIDKDGANP-ERVMQELSSIGLM 624 (732)
Q Consensus 548 DTPGhE~f~~~r~r~~~~ADiVILVVDasdgi-~~qt~EiL~~ak~~~v-PIIVViNKiDL~~a~~-erv~~eL~elgl~ 624 (732)
|||||++|..++.+++..+|++|||||++++. ++|+.+++..+...++ |+|+|+||+|+...+. ....+++.++ .
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~--l 164 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEF--V 164 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHH--H
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHH--H
Confidence 99999999999999999999999999999987 8999999988877776 6999999999965432 1122222221 0
Q ss_pred CCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEee--------ccCCCceEEEEEEeeEEe
Q 004746 625 PEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGL--------HKSKGPVATFILQNGTLK 696 (732)
Q Consensus 625 ~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~--------dkgrG~VatglV~~GtLk 696 (732)
...+...++++++||++|+||++|+++|..... ......+.++...|.+++. ++++|+|++|+|.+|+|+
T Consensus 165 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~--~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~ 242 (408)
T 1s0u_A 165 KGTIAENAPIIPISAHHEANIDVLLKAIQDFIP--TPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFK 242 (408)
T ss_dssp TTSTTTTCCEEEC------CHHHHHHHHHHHSC--CCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEE
T ss_pred hhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC--CCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEe
Confidence 111234578999999999999999999986432 2333456677888887763 345899999999999999
Q ss_pred cCCEEEEcCe--------------eEEEEEEEcCCCCccceecCCCCeeC
Q 004746 697 KGDVVVCGEA--------------FGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 697 ~GD~Iv~G~~--------------~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+||.|.+.+. ..+|++|+.+ ++.+++|.||+.|.|
T Consensus 243 ~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~a~~G~~v~~ 291 (408)
T 1s0u_A 243 VGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG-NTILRKAHPGGLIGV 291 (408)
T ss_dssp TTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET-TEEESEECSSSCEEE
T ss_pred cCCEEEEcCCcccccccccccccceeEEEEEEEC-CEEcCEEeCCCeEEE
Confidence 9999998542 6799999998 589999999999864
No 5
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.97 E-value=5.7e-30 Score=282.31 Aligned_cols=234 Identities=26% Similarity=0.365 Sum_probs=179.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc-------------------------------cccccCCceeeeeeEEEEeec
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-------------------------------AAAEAGGITQGIGAYKVQVPV 537 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~-------------------------------~vse~~GtTrdI~~y~v~i~i 537 (732)
...++|+|+|++|||||||+++|++... .....+|+|+++..+.+..
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-- 92 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-- 92 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec--
Confidence 4567999999999999999999964321 1223468898876665443
Q ss_pred CCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCC-------hhhHHHHHHHHhcCCC-EEEEEeCCCCCCC
Q 004746 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIR-------PQTNEAIAHAKAAGVP-IVIAINKIDKDGA 609 (732)
Q Consensus 538 dgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~-------~qt~EiL~~ak~~~vP-IIVViNKiDL~~a 609 (732)
.++.++|||||||++|...+..++..+|++|||||++++.+ .|+.+++..+...++| +|+|+||+|+...
T Consensus 93 --~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 93 --EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 170 (439)
T ss_pred --CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCccc
Confidence 34689999999999999999999999999999999999876 6999999999999999 9999999999643
Q ss_pred Ch-----HHHHHH----HHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHH--------HHHHH-hhhhhccCCCCCccc
Q 004746 610 NP-----ERVMQE----LSSIGLMPEDWGGDIPMVQISALKGEKVDDLLET--------IMLVA-ELQELKANPHRNAKG 671 (732)
Q Consensus 610 ~~-----erv~~e----L~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~--------Ii~la-el~~lk~~p~r~a~g 671 (732)
+. +.+..+ +..+++... .+++++++||++|.||+++++. |.... .+.......+.++..
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~---~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~ 247 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPK---KDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRL 247 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccc---CCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCccCCCCCeEE
Confidence 22 122222 223333211 2478999999999999997652 22221 222223334567777
Q ss_pred eEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 672 TVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 672 ~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
.|.+++ ++.|++++|+|.+|+|++||.|++++ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 248 ~v~~~~--~~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~-~~~~~~a~aG~~v~~ 307 (439)
T 3j2k_7 248 PIVDKY--KDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSD-DTETDFVAPGENLKI 307 (439)
T ss_pred EEEEEE--cCCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEEC-CeEcCEecCCCcceE
Confidence 777765 47899999999999999999999955 56799999998 589999999999874
No 6
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.97 E-value=2e-29 Score=274.44 Aligned_cols=237 Identities=30% Similarity=0.395 Sum_probs=182.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC---CccccccCCceeeeeeEEEEeec-------------C--Cc----ceeEEEEe
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT---KVAAAEAGGITQGIGAYKVQVPV-------------D--GK----LQPCVFLD 548 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~---k~~vse~~GtTrdI~~y~v~i~i-------------d--gk----~i~ItLID 548 (732)
.++|+++||+|||||||+++|++. .+.....+|+|+++++....+.. . +. ...++|||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 468999999999999999999954 33345568899988766555421 0 11 26899999
Q ss_pred CCCccccchhhcccccccCeEEEEEEecCCC-ChhhHHHHHHHHhcCC-CEEEEEeCCCCCCCCh-HHHHHHHHHcCCCC
Q 004746 549 TPGHEAFGAMRARGARVTDIAVIVVAADDGI-RPQTNEAIAHAKAAGV-PIVIAINKIDKDGANP-ERVMQELSSIGLMP 625 (732)
Q Consensus 549 TPGhE~f~~~r~r~~~~ADiVILVVDasdgi-~~qt~EiL~~ak~~~v-PIIVViNKiDL~~a~~-erv~~eL~elgl~~ 625 (732)
||||++|..++.+++..+|++|||||++++. ++|+.+++..+...++ |+|+|+||+|+...+. ....+++.++ ..
T Consensus 90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~--l~ 167 (410)
T 1kk1_A 90 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEF--IE 167 (410)
T ss_dssp CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH--HT
T ss_pred CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHH--HH
Confidence 9999999999999999999999999999987 8999999988887776 6999999999965321 1122222221 11
Q ss_pred CCCCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEee--------ccCCCceEEEEEEeeEEec
Q 004746 626 EDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGL--------HKSKGPVATFILQNGTLKK 697 (732)
Q Consensus 626 e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~--------dkgrG~VatglV~~GtLk~ 697 (732)
..+...++++++||++|.||++|+++|..... ......+.++...|.+++. ++.+|.|++|+|.+|+|++
T Consensus 168 ~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~--~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~ 245 (410)
T 1kk1_A 168 GTVAENAPIIPISALHGANIDVLVKAIEDFIP--TPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKV 245 (410)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC--CCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEET
T ss_pred hcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC--CCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEee
Confidence 11234579999999999999999999986432 2223345567777777653 3458999999999999999
Q ss_pred CCEEEEcCe--------------eEEEEEEEcCCCCccceecCCCCeeC
Q 004746 698 GDVVVCGEA--------------FGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 698 GD~Iv~G~~--------------~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
||.|.+.+. .++|++|+.+ ++.+++|.||+.|.|
T Consensus 246 gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~-~~~v~~a~aG~~v~~ 293 (410)
T 1kk1_A 246 GDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAG-GQFVEEAYPGGLVGV 293 (410)
T ss_dssp TCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET-TEEESEECSSSCEEE
T ss_pred CCEEEECCCCccccccccccccceeEEEEEEEC-CeEecEEcCCCEEEE
Confidence 999998542 6899999988 689999999998864
No 7
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.96 E-value=1.7e-29 Score=274.31 Aligned_cols=230 Identities=27% Similarity=0.292 Sum_probs=181.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCC-------cc---------ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTK-------VA---------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k-------~~---------vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~ 554 (732)
.++|+++||+|||||||+++|++.. +. .....|+|+++....+ ....+.++|||||||++
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~----~~~~~~~~iiDtpG~~~ 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY----STAARHYAHTDCPGHAD 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEE----ECSSCEEEEEECSSHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEe----ccCCeEEEEEECCChHH
Confidence 4689999999999999999998631 10 1235678887644332 33456899999999999
Q ss_pred cchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCChH-------HHHHHHHHcCCCCC
Q 004746 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPE-------RVMQELSSIGLMPE 626 (732)
Q Consensus 555 f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~~e-------rv~~eL~elgl~~e 626 (732)
|..++..++..+|++|||||++++.++|+.+++..+...++| +|+|+||+|+.. +.+ ++.+.+...++..
T Consensus 79 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~~~- 156 (397)
T 1d2e_A 79 YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ-DSEMVELVELEIRELLTEFGYKG- 156 (397)
T ss_dssp HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CHHHHHHHHHHHHHHHHHTTSCT-
T ss_pred HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC-CHHHHHHHHHHHHHHHHHcCCCc-
Confidence 999999999999999999999999999999999988888999 789999999964 221 2222333344321
Q ss_pred CCCCCCCEEEEecCCCCC----------HHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEe
Q 004746 627 DWGGDIPMVQISALKGEK----------VDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLK 696 (732)
Q Consensus 627 ~~gg~ipiVeVSAKtGeG----------IdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk 696 (732)
..++++++||++|.| |++|+++|..... ......+.++...|.+++.++++|+|++|+|.+|+|+
T Consensus 157 ---~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p--~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~ 231 (397)
T 1d2e_A 157 ---EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP--VPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILK 231 (397)
T ss_dssp ---TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC--CCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEE
T ss_pred ---ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC--CCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEe
Confidence 247899999999875 8899999876432 2223445677888888888999999999999999999
Q ss_pred cCCEEEEcC----eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 697 KGDVVVCGE----AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 697 ~GD~Iv~G~----~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+||.|.+.+ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 232 ~gd~v~~~~~~~~~~~~V~~i~~~-~~~~~~a~aG~~v~~ 270 (397)
T 1d2e_A 232 KGDECEFLGHSKNIRTVVTGIEMF-HKSLDRAEAGDNLGA 270 (397)
T ss_dssp TTCEEEEEETTEEEEEEEEEEEET-TEEESEEETTCEEEE
T ss_pred CCCEEEEeCCCCCeEEEEEEEEEC-CcccCEecCCCceEE
Confidence 999998632 57899999998 589999999998864
No 8
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.96 E-value=3e-30 Score=287.84 Aligned_cols=232 Identities=29% Similarity=0.344 Sum_probs=182.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCC-------ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTK-------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARG 562 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k-------~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~ 562 (732)
+.++|+++|++|||||||+++|++.. +..+..+|+|+++.+..+.+ .++.++|||||||++|...+..+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~----~~~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL----ENYRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE----TTEEEEECCCSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE----CCEEEEEEECCChHHHHHHHHHH
Confidence 45799999999999999999999766 34556788999987776654 34689999999999999999999
Q ss_pred ccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHH----Hc-CCCCCCCCCCCCEEE
Q 004746 563 ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELS----SI-GLMPEDWGGDIPMVQ 636 (732)
Q Consensus 563 ~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~----el-gl~~e~~gg~ipiVe 636 (732)
+..+|++|||||+++++++|+.+++..+...++|+|+|+||+|+.+.. .+...+++. .. ++ ..+++++
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~------~~~~ii~ 167 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL------KNSSIIP 167 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG------GGCCEEE
T ss_pred HhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc------ccceEEE
Confidence 999999999999999999999999999999999999999999996521 222223222 22 22 1468999
Q ss_pred EecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEE
Q 004746 637 ISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALF 714 (732)
Q Consensus 637 VSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~ 714 (732)
+||++|+||++|+++|......+.+...++.++...+.+++..++.|+|++|+|.+|+|++||.+.+.+ ...+|++|+
T Consensus 168 vSA~~g~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~ 247 (482)
T 1wb1_A 168 ISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQ 247 (482)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBC
T ss_pred EECcCCCCHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEE
Confidence 999999999999999998776543344455667777777777899999999999999999999999953 567999999
Q ss_pred cCCCCccceecCCCCeeC
Q 004746 715 DDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 715 ~~~g~~V~~A~pG~~V~I 732 (732)
.+ ++.+++|.||++|.|
T Consensus 248 ~~-~~~v~~a~~G~~v~~ 264 (482)
T 1wb1_A 248 YF-KESVMEAKAGDRVGM 264 (482)
T ss_dssp GG-GSCBCCCCSSCCCCE
T ss_pred EC-CeEeeEecCCCEEEE
Confidence 88 689999999998853
No 9
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.96 E-value=3.2e-29 Score=272.34 Aligned_cols=231 Identities=29% Similarity=0.335 Sum_probs=180.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC--------Ccc---------ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT--------KVA---------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~--------k~~---------vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
..++|+++|++|||||||+++|++. .+. .....|+|++..... +....+.++|||||||
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~----~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVE----YETAKRHYSHVDCPGH 85 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEE----EECSSCEEEEEECCCS
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeE----eccCCeEEEEEECCCh
Confidence 4578999999999999999999863 111 012457777653322 2334568999999999
Q ss_pred cccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCChH-------HHHHHHHHcCCC
Q 004746 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPE-------RVMQELSSIGLM 624 (732)
Q Consensus 553 E~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~~e-------rv~~eL~elgl~ 624 (732)
++|...+..++..+|++|||||++++..+++.+++..+...++| +|+|+||+|+.. +.+ ++...+..+++.
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-CHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC-cHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999888999 899999999974 221 122233333431
Q ss_pred CCCCCCCCCEEEEecCCCCC------------------HHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceE
Q 004746 625 PEDWGGDIPMVQISALKGEK------------------VDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVA 686 (732)
Q Consensus 625 ~e~~gg~ipiVeVSAKtGeG------------------IdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~Va 686 (732)
..+++++++||++|.| +++|+++|..... ......+.++...|.+++.++++|+|+
T Consensus 165 ----~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp--~p~~~~~~p~~~~v~~v~~~~~~G~v~ 238 (405)
T 2c78_A 165 ----GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP--TPVRDVDKPFLMPVEDVFTITGRGTVA 238 (405)
T ss_dssp ----TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC--CCCCCCSSCCEEECCEEEEETTTEEEE
T ss_pred ----ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC--CCCCCCCCCcEEEEEEEEEcCCCceEE
Confidence 1247899999999987 7788887765432 222344567788888888899999999
Q ss_pred EEEEEeeEEecCCEEEEcC-----eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 687 TFILQNGTLKKGDVVVCGE-----AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 687 tglV~~GtLk~GD~Iv~G~-----~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+|+|.+|+|++||.|.+.+ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 239 ~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~-~~~~~~a~aG~~v~~ 288 (405)
T 2c78_A 239 TGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMH-RKTLQEGIAGDNVGV 288 (405)
T ss_dssp EEECCBSEEETTCEEEEESSSSSCEEEEEEEEEET-TEEESEEETTCEEEE
T ss_pred EEEEecccccCCCEEEEeCCCCCeeeEEEEEEEEC-CcccCEEcCCCEEEE
Confidence 9999999999999998743 46899999988 589999999998863
No 10
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.96 E-value=5.8e-29 Score=276.76 Aligned_cols=236 Identities=24% Similarity=0.298 Sum_probs=177.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCC-------------------------------ccccccCCceeeeeeEEEEeec
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK-------------------------------VAAAEAGGITQGIGAYKVQVPV 537 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k-------------------------------~~vse~~GtTrdI~~y~v~i~i 537 (732)
...++|+|+|++|+|||||+++|++.. .......|+|+++..+.+.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~--- 107 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS--- 107 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe---
Confidence 445799999999999999999997541 1123345888887666544
Q ss_pred CCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCC-------CChhhHHHHHHHHhcCCC-EEEEEeCCCCCCC
Q 004746 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-------IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGA 609 (732)
Q Consensus 538 dgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdg-------i~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a 609 (732)
...+.++|||||||++|..++..++..+|++|||||++++ +..|+.+++..+...+++ +|||+||+|+.+.
T Consensus 108 -~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 108 -THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp -CSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTT
T ss_pred -cCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccc
Confidence 3457899999999999999999999999999999999987 668999999988888865 9999999999764
Q ss_pred ChHH---HHHH----HHHcCCCCCCCCCCCCEEEEecCCCCCHHH---------------HHHHHHHHHh-hhh--hccC
Q 004746 610 NPER---VMQE----LSSIGLMPEDWGGDIPMVQISALKGEKVDD---------------LLETIMLVAE-LQE--LKAN 664 (732)
Q Consensus 610 ~~er---v~~e----L~elgl~~e~~gg~ipiVeVSAKtGeGIde---------------Lfe~Ii~lae-l~~--lk~~ 664 (732)
+... +..+ +...++... .++|+++||++|+||++ |++.|..+.+ +.. ....
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~----~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~ 262 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFED----NINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGIN 262 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGG----GEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcc----cceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhccccccccc
Confidence 4322 2222 223343221 36899999999999985 3444443321 111 2334
Q ss_pred CCCCccceEEEEeecc---CCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCC-------CCccceecCCCCeeC
Q 004746 665 PHRNAKGTVIEAGLHK---SKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDS-------GNRVDEAGPSIPVQV 732 (732)
Q Consensus 665 p~r~a~g~Vies~~dk---grG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~-------g~~V~~A~pG~~V~I 732 (732)
.+.++...|.+++... +.|+|++|+|.+|+|++||.|++++ ...+|++|+.++ .+.+++|.||+.|.|
T Consensus 263 ~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~ 342 (483)
T 3p26_A 263 KDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTL 342 (483)
T ss_dssp SSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEE
T ss_pred CCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEE
Confidence 5677888888877765 5899999999999999999999955 678999999985 479999999999864
No 11
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.96 E-value=4.6e-28 Score=263.38 Aligned_cols=240 Identities=26% Similarity=0.339 Sum_probs=176.2
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccc-cccCCceeeee-------eEEEE-----eec---CCcceeEEEEeCCC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA-AEAGGITQGIG-------AYKVQ-----VPV---DGKLQPCVFLDTPG 551 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~v-se~~GtTrdI~-------~y~v~-----i~i---dgk~i~ItLIDTPG 551 (732)
....++|+++|++|||||||+++|++..... ......|.... .+... ..+ ......++||||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 3456899999999999999999998743221 00000110000 00000 000 11226899999999
Q ss_pred ccccchhhcccccccCeEEEEEEecCCC-ChhhHHHHHHHHhcCC-CEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCC
Q 004746 552 HEAFGAMRARGARVTDIAVIVVAADDGI-RPQTNEAIAHAKAAGV-PIVIAINKIDKDGAN-PERVMQELSSIGLMPEDW 628 (732)
Q Consensus 552 hE~f~~~r~r~~~~ADiVILVVDasdgi-~~qt~EiL~~ak~~~v-PIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~ 628 (732)
|++|...+..++..+|++|||+|++++. .+++.+++..+...+. |+|+|+||+|+.+.. ......++.+. ....+
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~--l~~~~ 162 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF--TKGTW 162 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH--HTTST
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHH--HHhhC
Confidence 9999999999999999999999999987 8999999998887776 799999999996532 11222233221 11112
Q ss_pred CCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeecc--------CCCceEEEEEEeeEEecCCE
Q 004746 629 GGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHK--------SKGPVATFILQNGTLKKGDV 700 (732)
Q Consensus 629 gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dk--------grG~VatglV~~GtLk~GD~ 700 (732)
...++++++||++|.||++|+++|.... .......+.++...|.+++... .+|+|++|+|.+|+|++||.
T Consensus 163 ~~~~~ii~vSA~~g~gi~~L~~~l~~~l--~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~ 240 (403)
T 3sjy_A 163 AENVPIIPVSALHKINIDSLIEGIEEYI--KTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQE 240 (403)
T ss_dssp TTTCCEEECBTTTTBSHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCE
T ss_pred CCCCEEEEEECCCCcChHHHHHHHHHhC--CCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCE
Confidence 3457899999999999999999998643 3334455677888888876543 38999999999999999999
Q ss_pred EEEcCe--------------eEEEEEEEcCCCCccceecCCCCeeC
Q 004746 701 VVCGEA--------------FGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 701 Iv~G~~--------------~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
|.+++. ..+|++|+.+ ++.+++|.||+.|.|
T Consensus 241 v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~a~~G~~v~~ 285 (403)
T 3sjy_A 241 IKVLPGLRVEKQGKVSYEPIFTKISSIRFG-DEEFKEAKPGGLVAI 285 (403)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEEET-TEEESEECSSSCEEE
T ss_pred EEEeCCcccccccccccccccEEEEEEEEC-CEEcCEEeCCCEEEE
Confidence 999543 3699999998 689999999999864
No 12
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.1e-29 Score=287.73 Aligned_cols=231 Identities=22% Similarity=0.274 Sum_probs=161.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc-------------------------------cccccCCceeeeeeEEEEeec
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-------------------------------AAAEAGGITQGIGAYKVQVPV 537 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~-------------------------------~vse~~GtTrdI~~y~v~i~i 537 (732)
...++|+|+|++|||||||+++|+.... .....+|+|+++.++.+..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-- 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-- 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe--
Confidence 4457899999999999999999964210 1122568888876655443
Q ss_pred CCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCC-------ChhhHHHHHHHHhcCCC-EEEEEeCCCCCCC
Q 004746 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-------RPQTNEAIAHAKAAGVP-IVIAINKIDKDGA 609 (732)
Q Consensus 538 dgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi-------~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a 609 (732)
.++.++|||||||++|..++..++..+|++|||||++++. ..|+.+++..+...++| +|||+||||+...
T Consensus 253 --~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 253 --DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp --------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTT
T ss_pred --CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccc
Confidence 3468999999999999999999999999999999999854 89999999999999998 9999999999765
Q ss_pred ChHHH---HHHHHH-----cCCCCCCCCCCCCEEEEecCCCCCHH--------------HHHHHHHHHHhhhhhccCCCC
Q 004746 610 NPERV---MQELSS-----IGLMPEDWGGDIPMVQISALKGEKVD--------------DLLETIMLVAELQELKANPHR 667 (732)
Q Consensus 610 ~~erv---~~eL~e-----lgl~~e~~gg~ipiVeVSAKtGeGId--------------eLfe~Ii~lael~~lk~~p~r 667 (732)
+.+++ ..++.. .++.. ..++||++||++|.||+ .|++.|.... ......+.
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~----~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~---pp~~~~~~ 403 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKT----SNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV---PPEKPYRK 403 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCG----GGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC---CCSCTTTS
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCc----cceEEEEEecccCcccccccccccccccchHHHHHHHHhhc---cccccccc
Confidence 54332 233322 22211 23589999999999998 6887776432 23334567
Q ss_pred CccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEc--CeeEEEEEEEcCCCCccc-eecCCCCeeC
Q 004746 668 NAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCG--EAFGKVRALFDDSGNRVD-EAGPSIPVQV 732 (732)
Q Consensus 668 ~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G--~~~gkVrsI~~~~g~~V~-~A~pG~~V~I 732 (732)
++...|.+++.. +.|++++|+|.+|+|++||.|++. ....+|++|+.+ ++.++ +|.||+.|.|
T Consensus 404 p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~-~~~~~~~a~aG~~v~~ 469 (592)
T 3mca_A 404 PLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRN-SDPSSTWAVAGDTVTL 469 (592)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECS-SSCSCCEEETTCEEEE
T ss_pred cchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEc-CccCcceecCCCEEEE
Confidence 788889998888 999999999999999999999994 467899999998 58999 9999999864
No 13
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.96 E-value=1.5e-28 Score=265.90 Aligned_cols=223 Identities=21% Similarity=0.192 Sum_probs=175.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEE
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILV 572 (732)
+|+++|++|||||||+++|+ ..|+|+++.++.+. ..++.++|||||||++|...+..+++.+|++|||
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~----~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailV 90 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNND----KEGRNMVFVDAHSYPKTLKSLITALNISDIAVLC 90 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEEC----SSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEe----cCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEE
Confidence 89999999999999999998 46788887665543 3456799999999999999999999999999999
Q ss_pred EEecCCCChhhHHHHHHHHhcCCCE-EEEEe-CCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEE--EecCC---CCC
Q 004746 573 VAADDGIRPQTNEAIAHAKAAGVPI-VIAIN-KIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQ--ISALK---GEK 644 (732)
Q Consensus 573 VDasdgi~~qt~EiL~~ak~~~vPI-IVViN-KiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVe--VSAKt---GeG 644 (732)
|| ++++.+|+.+++..+...++|. |+++| |+|+ .... +....++.++-- ......+++++ +||++ |+|
T Consensus 91 vd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~--~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 91 IP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITS--GTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp EC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTT--TSTTTTCEEEECCCCTTSSSTTTT
T ss_pred Ec-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHH--hcCCCceEEEecccccccCcCCCC
Confidence 99 9999999999999999899997 99999 9999 4221 222233333210 00013478999 99999 999
Q ss_pred HHHHHHHHHHHHhhhhhccC--CCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCc
Q 004746 645 VDDLLETIMLVAELQELKAN--PHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNR 720 (732)
Q Consensus 645 IdeLfe~Ii~lael~~lk~~--p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~ 720 (732)
|++|++.|....+....... ...++...+.+++..++.|++++|+|.+|+|++||.|++.+ ...+|++|+.+ ++.
T Consensus 167 i~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~-~~~ 245 (370)
T 2elf_A 167 VDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSH-DVD 245 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEET-TEE
T ss_pred HHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEEC-CCC
Confidence 99999999876543211111 22334556788888889999999999999999999999854 67899999988 689
Q ss_pred cceecCCCCeeC
Q 004746 721 VDEAGPSIPVQV 732 (732)
Q Consensus 721 V~~A~pG~~V~I 732 (732)
+++|.||+.|.|
T Consensus 246 v~~a~aGd~v~i 257 (370)
T 2elf_A 246 IDSAPAGTRVGM 257 (370)
T ss_dssp ESEEETTCEEEE
T ss_pred ccEEcCCCcceE
Confidence 999999998864
No 14
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.96 E-value=3.2e-29 Score=278.32 Aligned_cols=235 Identities=24% Similarity=0.349 Sum_probs=158.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCC--cc-----------------------------ccccCCceeeeeeEEEEeec
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK--VA-----------------------------AAEAGGITQGIGAYKVQVPV 537 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k--~~-----------------------------vse~~GtTrdI~~y~v~i~i 537 (732)
...++|+++||+|||||||+++|+... +. .....|+|+++.+..+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-- 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-- 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec--
Confidence 345789999999999999999997421 10 112467888877655443
Q ss_pred CCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCC-------hhhHHHHHHHHhcCCC-EEEEEeCCCCCCC
Q 004746 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIR-------PQTNEAIAHAKAAGVP-IVIAINKIDKDGA 609 (732)
Q Consensus 538 dgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~-------~qt~EiL~~ak~~~vP-IIVViNKiDL~~a 609 (732)
.++.++|||||||++|..++..++..+|++|||||++++.+ .|+.+++..+...++| +|||+||+|+...
T Consensus 119 --~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~ 196 (467)
T 1r5b_A 119 --EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV 196 (467)
T ss_dssp --SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTC
T ss_pred --CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCc
Confidence 34689999999999999999999999999999999999863 6899999998888998 9999999999653
Q ss_pred C--hHH-------HHHHHHHc-CCCCCCCCCCCCEEEEecCCCCCHHHHHHH----------HHHH-HhhhhhccCCCCC
Q 004746 610 N--PER-------VMQELSSI-GLMPEDWGGDIPMVQISALKGEKVDDLLET----------IMLV-AELQELKANPHRN 668 (732)
Q Consensus 610 ~--~er-------v~~eL~el-gl~~e~~gg~ipiVeVSAKtGeGIdeLfe~----------Ii~l-ael~~lk~~p~r~ 668 (732)
+ .++ +...+... ++.. ..+++++++||++|.||+++++. |... ..+.......+.+
T Consensus 197 ~~~~~~~~~i~~e~~~~l~~~~g~~~---~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p 273 (467)
T 1r5b_A 197 QWSEERYKECVDKLSMFLRRVAGYNS---KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAP 273 (467)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCCCH---HHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSC
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCCc---cCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCC
Confidence 2 222 22223333 3320 01367999999999999876521 2211 1122222223556
Q ss_pred ccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEc--CeeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCG--EAFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 669 a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G--~~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+...|.+++. +.|+|++|+|.+|+|++||.|+++ ....+|++|+.+.++.+++|.||++|.|
T Consensus 274 ~~~~v~~~~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i 337 (467)
T 1r5b_A 274 FIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRL 337 (467)
T ss_dssp CEEECCEEEE--SSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEE
T ss_pred cEEEEEEEEe--CCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEE
Confidence 7777777653 589999999999999999999994 4678999999986789999999999864
No 15
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2e-28 Score=280.60 Aligned_cols=236 Identities=23% Similarity=0.290 Sum_probs=180.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcccc-------------------------------ccCCceeeeeeEEEEeec
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAA-------------------------------EAGGITQGIGAYKVQVPV 537 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vs-------------------------------e~~GtTrdI~~y~v~i~i 537 (732)
...++|+|+|++|||||||+++|++...... ..+|+|+++..+.+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-- 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence 4568999999999999999999986533221 1368898887666553
Q ss_pred CCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCC-------CChhhHHHHHHHHhcCCC-EEEEEeCCCCCCC
Q 004746 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-------IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGA 609 (732)
Q Consensus 538 dgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdg-------i~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a 609 (732)
.++.++|||||||+.|...+..++..+|++|||||++++ +..++.+++..+...++| +|||+||+|+...
T Consensus 243 --~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 243 --HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp --SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT
T ss_pred --CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch
Confidence 456899999999999999999999999999999999975 578999999999888877 9999999999764
Q ss_pred ChHH---HHHH----HHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHH-----------HHHHHHhhh--hh-----ccC
Q 004746 610 NPER---VMQE----LSSIGLMPEDWGGDIPMVQISALKGEKVDDLLE-----------TIMLVAELQ--EL-----KAN 664 (732)
Q Consensus 610 ~~er---v~~e----L~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe-----------~Ii~lael~--~l-----k~~ 664 (732)
.... +... +...++.. ..+++|+|||++|.||+++.. .|..+.+.. .. ...
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~----~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~ 396 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFE----DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGIN 396 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCG----GGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCS
T ss_pred hHHHHHHHHHHHHHHHHhhcccc----cCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccc
Confidence 3322 2222 23334322 136899999999999987632 122211111 11 123
Q ss_pred CCCCccceEEEEeecc---CCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCC-------CCccceecCCCCeeC
Q 004746 665 PHRNAKGTVIEAGLHK---SKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDS-------GNRVDEAGPSIPVQV 732 (732)
Q Consensus 665 p~r~a~g~Vies~~dk---grG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~-------g~~V~~A~pG~~V~I 732 (732)
.+.++...|.+++... +.|+|++|+|.+|+|++||.|++++ ...+|++|+.++ ++.+++|.||++|.|
T Consensus 397 ~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l 476 (611)
T 3izq_1 397 KDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTL 476 (611)
T ss_dssp CCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEE
T ss_pred cccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceE
Confidence 4456777777777665 6899999999999999999999954 567899999984 478999999999874
No 16
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.95 E-value=9.2e-29 Score=274.02 Aligned_cols=233 Identities=23% Similarity=0.355 Sum_probs=179.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCC--cc-----------------------------ccccCCceeeeeeEEEEeecCC
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTK--VA-----------------------------AAEAGGITQGIGAYKVQVPVDG 539 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k--~~-----------------------------vse~~GtTrdI~~y~v~i~idg 539 (732)
.++|+++|++|||||||+++|++.. +. .+...|+|+++.++.+. .
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~----~ 82 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE----T 82 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE----C
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe----c
Confidence 4789999999999999999998531 10 11246889888776543 3
Q ss_pred cceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCCh-------hhHHHHHHHHhcCCC-EEEEEeCCCCCCCCh
Q 004746 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRP-------QTNEAIAHAKAAGVP-IVIAINKIDKDGANP 611 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~-------qt~EiL~~ak~~~vP-IIVViNKiDL~~a~~ 611 (732)
..+.++|||||||++|...+..++..+|++|||||++++..+ |+.+++..+...++| +|+|+||+|+...+.
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCH
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCH
Confidence 456899999999999999999999999999999999987655 888888888888887 999999999975433
Q ss_pred HH---HHHH----HHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHH--------------------HHHHHHh-hhhhcc
Q 004746 612 ER---VMQE----LSSIGLMPEDWGGDIPMVQISALKGEKVDDLLE--------------------TIMLVAE-LQELKA 663 (732)
Q Consensus 612 er---v~~e----L~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe--------------------~Ii~lae-l~~lk~ 663 (732)
++ +..+ +..+++... +++++++||++|.||+++.+ .|+...+ +.....
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~----~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~ 238 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPK----TVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSR 238 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGG----GCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCcc----CceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhccCCCcc
Confidence 32 2222 233343211 36899999999999975422 1222111 112222
Q ss_pred CCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 664 NPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 664 ~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
..+.++...|.+++..++.|+|++|+|.+|+|+.||.|.+.+ ...+|++|+.+ ++.+++|.||++|.|
T Consensus 239 ~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~-~~~~~~a~aG~~v~i 308 (458)
T 1f60_A 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMH-HEQLEQGVPGDNVGF 308 (458)
T ss_dssp CTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEET-TEECSCBCTTCEEEE
T ss_pred cCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEEC-CeEEEEEcCCCEEEE
Confidence 345678888999999999999999999999999999999854 67899999988 578999999998864
No 17
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.95 E-value=2.8e-28 Score=267.98 Aligned_cols=234 Identities=25% Similarity=0.387 Sum_probs=170.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC--Ccc-----------------------------ccccCCceeeeeeEEEEeecC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT--KVA-----------------------------AAEAGGITQGIGAYKVQVPVD 538 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~--k~~-----------------------------vse~~GtTrdI~~y~v~i~id 538 (732)
..++|+++|++|||||||+++|+.. .+. .....|+|+++..+.+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~---- 80 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE---- 80 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE----
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe----
Confidence 3478999999999999999999854 111 11246788887655433
Q ss_pred CcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCC-------CChhhHHHHHHHHhcCCC-EEEEEeCCCCCCC-
Q 004746 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-------IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGA- 609 (732)
Q Consensus 539 gk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdg-------i~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a- 609 (732)
...+.++|||||||++|..++..++..+|++|||||++++ +..|+.+++..+...++| +|+|+||+|+.+.
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 3456899999999999999999999999999999999998 888999999988888875 9999999999763
Q ss_pred -ChH---HHHHH----HHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHH--------HHHHHHh-hhhhccCCCCCccce
Q 004746 610 -NPE---RVMQE----LSSIGLMPEDWGGDIPMVQISALKGEKVDDLLE--------TIMLVAE-LQELKANPHRNAKGT 672 (732)
Q Consensus 610 -~~e---rv~~e----L~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe--------~Ii~lae-l~~lk~~p~r~a~g~ 672 (732)
+.+ .+..+ +...++.. ..++++++||++|+||.++++ .|+.... +.......+.++...
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~ 236 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNT----NKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIP 236 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCC----TTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTTCCCCCCGGGSCCBEE
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCc----CCceEEEeecccCccccccccccccccchhHHHHHhccCCCCCCCCCCeEEE
Confidence 222 22222 33333321 147899999999999985433 2222111 111111123566777
Q ss_pred EEEEeeccCCCceEEEEEEeeEEecCCEEEEc--CeeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 673 VIEAGLHKSKGPVATFILQNGTLKKGDVVVCG--EAFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 673 Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G--~~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
|.+++..++.|++++|+|.+|+|++||.|++. +...+|++|+.+ ++.+++|.||++|.|
T Consensus 237 v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~-~~~~~~a~aG~~v~~ 297 (435)
T 1jny_A 237 IQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH-HTKMDKAEPGDNIGF 297 (435)
T ss_dssp EEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET-TEEESEECTTCEEEE
T ss_pred EEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC-CcEEeEEcCCCEEEE
Confidence 88888889999999999999999999999994 468899999998 589999999999864
No 18
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.95 E-value=2.7e-28 Score=267.77 Aligned_cols=233 Identities=26% Similarity=0.335 Sum_probs=169.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccc---------------------------------cccCCceeeeeeEEEEeec
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAA---------------------------------AEAGGITQGIGAYKVQVPV 537 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~v---------------------------------se~~GtTrdI~~y~v~i~i 537 (732)
.++|+++|++|||||||+++|++..... ....|+|+++.+..+.
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~--- 100 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS--- 100 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE---
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee---
Confidence 4789999999999999999998543100 1124667666544433
Q ss_pred CCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCChHHH--
Q 004746 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPERV-- 614 (732)
Q Consensus 538 dgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~~erv-- 614 (732)
...+.++|||||||++|..++..++..+|++|||||++++..+++.+++..+...++| +|+|+||+|+.+.+.+++
T Consensus 101 -~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~ 179 (434)
T 1zun_B 101 -TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFES 179 (434)
T ss_dssp -CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHH
T ss_pred -cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHH
Confidence 3456899999999999999999999999999999999999999999999888888886 999999999976543332
Q ss_pred -HHHHH----HcCCCCCCCCCCCCEEEEecCCCCCHHHHHHH--------HHHHHh-hhhhccCCCCCccceEEEEeecc
Q 004746 615 -MQELS----SIGLMPEDWGGDIPMVQISALKGEKVDDLLET--------IMLVAE-LQELKANPHRNAKGTVIEAGLHK 680 (732)
Q Consensus 615 -~~eL~----elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~--------Ii~lae-l~~lk~~p~r~a~g~Vies~~dk 680 (732)
..++. .+++. ...++++++||++|.||+++++. |..+.+ +.........++...|..+....
T Consensus 180 i~~~~~~~~~~~g~~----~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~~ 255 (434)
T 1zun_B 180 IKADYLKFAEGIAFK----PTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPN 255 (434)
T ss_dssp HHHHHHHHHHTTTCC----CSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEECSS
T ss_pred HHHHHHHHHHHhCCC----ccCceEEEEeccCCCCcccccccCccccCchHHHHHhcCCCcccCCCCCcEEEEEEEeccC
Confidence 22222 22210 12368999999999999984332 111111 11222223445555555554444
Q ss_pred CCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 681 SKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 681 grG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+.|..+.|+|.+|+|++||.|.+++ ...+|++|+.++ ..+++|.||++|.|
T Consensus 256 ~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~-~~~~~a~aG~~v~~ 308 (434)
T 1zun_B 256 LNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE-GELEQAGPGQAVTL 308 (434)
T ss_dssp SSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETT-EEESEECTTCEEEE
T ss_pred CCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC-cceeEecCCCEEEE
Confidence 5677788999999999999999954 678999999995 68999999999864
No 19
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.95 E-value=1.7e-27 Score=272.49 Aligned_cols=233 Identities=26% Similarity=0.344 Sum_probs=181.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc---------------ccccCCceeeeeeEEEEeec-CCcceeEEEEeCCCcc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA---------------AAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHE 553 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~---------------vse~~GtTrdI~~y~v~i~i-dgk~i~ItLIDTPGhE 553 (732)
+.++|+|+||+|||||||+++|+..... .....|+|+......+.+.. ++..+.++|||||||+
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3468999999999999999999852110 12235677766555555443 5666899999999999
Q ss_pred ccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCCCCCCCCCC
Q 004746 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDI 632 (732)
Q Consensus 554 ~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~~e~~gg~i 632 (732)
+|..++.+++..+|++|||||++++...++.+.+..+...++|+|+|+||+|+..++.++...++.+. ++. ..
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~------~~ 158 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD------PE 158 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC------GG
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCC------cc
Confidence 99999999999999999999999999999999999988899999999999999888877777776653 221 12
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEE
Q 004746 633 PMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKV 710 (732)
Q Consensus 633 piVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkV 710 (732)
+++++||++|.||++|+++|.... +.....++.++.+.|+++.++++.|.+++++|.+|+|++||.|.+.+ ...+|
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~~~l--p~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v 236 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIVNRI--PPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEV 236 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEEC
T ss_pred cEEEEEeecCCCchHHHHHHHHhc--ccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEee
Confidence 589999999999999999998643 33344567788999999999999999999999999999999999843 34455
Q ss_pred EEEEcCC--CCccceecCCCCe
Q 004746 711 RALFDDS--GNRVDEAGPSIPV 730 (732)
Q Consensus 711 rsI~~~~--g~~V~~A~pG~~V 730 (732)
..+.... ...+++|.+|+.+
T Consensus 237 ~~i~~~~~~~~~v~~~~aGdi~ 258 (600)
T 2ywe_A 237 TEVGAQTPKMTKFDKLSAGDVG 258 (600)
T ss_dssp CEEEEESSSEEEESCEETTCEE
T ss_pred ecccccCCCceECCEEecCcee
Confidence 5655432 3568899999864
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.95 E-value=3.4e-27 Score=269.94 Aligned_cols=233 Identities=28% Similarity=0.334 Sum_probs=178.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc---------------ccccCCceeeeeeEEEEeec-CCcceeEEEEeCCCcc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA---------------AAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHE 553 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~---------------vse~~GtTrdI~~y~v~i~i-dgk~i~ItLIDTPGhE 553 (732)
+..+|+|+||+|||||||+++|+..... .....|+|+......+.+.. ++..+.++|||||||+
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4568999999999999999999852211 11245677665555555432 5667899999999999
Q ss_pred ccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCCCCCCCCCC
Q 004746 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDI 632 (732)
Q Consensus 554 ~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~~e~~gg~i 632 (732)
+|..++.+++..+|++|||||+++++..++.+.+..+...++|+|+|+||+|+..++.++...++.+. ++. ..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~------~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGID------AT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC------CT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCC------cc
Confidence 99999999999999999999999999999999999888889999999999999888777776666553 321 13
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEE
Q 004746 633 PMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKV 710 (732)
Q Consensus 633 piVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkV 710 (732)
+++++||++|.||++|+++|.... +.....++.++.+.|+++..+++.|.+++++|.+|+|+.||.+.+.. ...+|
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~l--p~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v 234 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDI--PPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNA 234 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEEC
T ss_pred eEEEeecccCCCchhHHHHHhhcC--CCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEE
Confidence 589999999999999999998654 33345677889999999999999999999999999999999999843 34455
Q ss_pred EEEEcC--CCCccceecCCCCe
Q 004746 711 RALFDD--SGNRVDEAGPSIPV 730 (732)
Q Consensus 711 rsI~~~--~g~~V~~A~pG~~V 730 (732)
..+... .+..++++.+|+.+
T Consensus 235 ~~i~~~~~~~~~~~~~~aGdi~ 256 (599)
T 3cb4_D 235 DRLGIFTPKQVDRTELKCGEVG 256 (599)
T ss_dssp CEEEEESSSEEECSEECTTCEE
T ss_pred eeeeeccCCceECCEEcCCCee
Confidence 555442 24578999999864
No 21
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.94 E-value=4.8e-27 Score=282.24 Aligned_cols=232 Identities=29% Similarity=0.318 Sum_probs=176.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCC----------c------cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTK----------V------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k----------~------~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE 553 (732)
..++|+|+||+|||||||+++|++.. + ......|+|+++....+ +...+.++|||||||+
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f----~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY----DTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEE----ECSSCEEEEEECCCHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEE----cCCCEEEEEEECCChH
Confidence 44789999999999999999998631 0 11234677777644332 3455789999999999
Q ss_pred ccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCCh--H----HHHHHHHHcCCCCC
Q 004746 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANP--E----RVMQELSSIGLMPE 626 (732)
Q Consensus 554 ~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~~--e----rv~~eL~elgl~~e 626 (732)
+|..++..++..+|++|||||++++.++|+.+++..+...++| +|||+||+|+..... + ++...+...++.
T Consensus 371 dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~-- 448 (1289)
T 3avx_A 371 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP-- 448 (1289)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC--
T ss_pred HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc--
Confidence 9999999999999999999999999999999999998888999 899999999975211 1 122233344432
Q ss_pred CCCCCCCEEEEecCCC--------CCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecC
Q 004746 627 DWGGDIPMVQISALKG--------EKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKG 698 (732)
Q Consensus 627 ~~gg~ipiVeVSAKtG--------eGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~G 698 (732)
+.+++++++||++| .||++|+++|..... ......+.++...|.+++.++++|+|++|+|.+|+|++|
T Consensus 449 --~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip--~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvG 524 (1289)
T 3avx_A 449 --GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP--EPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVG 524 (1289)
T ss_dssp --TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC--CCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETT
T ss_pred --ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC--CCccccccceeeeccccccccCCcEEEEEEEeccEEecC
Confidence 12478999999999 468889888875322 112223456777788888889999999999999999999
Q ss_pred CEEEEcC----eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 699 DVVVCGE----AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 699 D~Iv~G~----~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
|.|.+.+ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 525 D~V~I~ps~~~~~~kVksI~~~-~~~v~eA~AGd~Vgl 561 (1289)
T 3avx_A 525 EEVEIVGIKETQKSTCTGVEMF-RKLLDEGRAGENVGV 561 (1289)
T ss_dssp CEEEEESSSSCEEEEEEEEECS-SCEESEEETTCEEEE
T ss_pred CEEEEecCCCceeEEEEEEeec-CceeeEEecCCccee
Confidence 9998844 46799999988 589999999998864
No 22
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=3.2e-26 Score=214.83 Aligned_cols=173 Identities=66% Similarity=1.015 Sum_probs=145.2
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccccc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
+..+.++|+|+|.+|+|||||+++|++..+...+.+++|.++..+.+.+ ++ ..+.||||||++.|..++..++..+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV--ND--KKITFLDTPGHEAFTTMRARGAQVT 79 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE--TT--EEEEESCCCSSSSSSCSCCSSCCCC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe--CC--ceEEEEECCCCHHHHHHHHHHHhhC
Confidence 5677899999999999999999999998887777777777776655543 33 5789999999999999999999999
Q ss_pred CeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHH
Q 004746 567 DIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (732)
Q Consensus 567 DiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGId 646 (732)
|++|+|+|++++...++.+.+..+...++|+++|+||+|+...+.+++...+.........|+..++++++||++|.||+
T Consensus 80 d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 159 (178)
T 2lkc_A 80 DIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLD 159 (178)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHH
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHH
Confidence 99999999999888888888888887899999999999998766666666665555555566556789999999999999
Q ss_pred HHHHHHHHHHhhhhhcc
Q 004746 647 DLLETIMLVAELQELKA 663 (732)
Q Consensus 647 eLfe~Ii~lael~~lk~ 663 (732)
+||++|........+..
T Consensus 160 ~l~~~l~~~~~~~~~~~ 176 (178)
T 2lkc_A 160 HLLEMILLVSEMEELKA 176 (178)
T ss_dssp HHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHhhhhhcccc
Confidence 99999998776655443
No 23
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.94 E-value=5.2e-26 Score=256.72 Aligned_cols=239 Identities=23% Similarity=0.289 Sum_probs=181.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc----------------------ccccCCceeeeeeEEEEeecCCcceeEEEE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA----------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFL 547 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~----------------------vse~~GtTrdI~~y~v~i~idgk~i~ItLI 547 (732)
+.++|+|+|++|||||||+++|+..... .....|+|.......+. ..++.++||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~----~~~~~i~li 87 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFP----YKDYLINLL 87 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEE----ETTEEEEEE
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEE----eCCEEEEEE
Confidence 3578999999999999999999621110 11235666655444433 245789999
Q ss_pred eCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHH-cCCC--
Q 004746 548 DTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS-IGLM-- 624 (732)
Q Consensus 548 DTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~e-lgl~-- 624 (732)
|||||++|...+.+++..+|++|+|||++++...++..++..+...++|+|+|+||+|+...+..+...++.+ ++..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~ 167 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCA 167 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEE
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999987776666555543 2210
Q ss_pred CCC----------------------C------------------------------------------------------
Q 004746 625 PED----------------------W------------------------------------------------------ 628 (732)
Q Consensus 625 ~e~----------------------~------------------------------------------------------ 628 (732)
... |
T Consensus 168 ~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 247 (528)
T 3tr5_A 168 PVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLK 247 (528)
T ss_dssp ESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHT
T ss_pred eeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhc
Confidence 000 0
Q ss_pred CCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhcc-------CCCCCccceEEEEee--cc-CCCceEEEEEEeeEEecC
Q 004746 629 GGDIPMVQISALKGEKVDDLLETIMLVAELQELKA-------NPHRNAKGTVIEAGL--HK-SKGPVATFILQNGTLKKG 698 (732)
Q Consensus 629 gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~-------~p~r~a~g~Vies~~--dk-grG~VatglV~~GtLk~G 698 (732)
+..+|+|++||++|.||++|+++|......+.... ..+.++.+.|+++.. ++ ++|.++.++|.+|+|+.|
T Consensus 248 ~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g 327 (528)
T 3tr5_A 248 GELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKG 327 (528)
T ss_dssp TSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEETT
T ss_pred CceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEcCC
Confidence 01137899999999999999999987654322111 124678899999774 77 899999999999999999
Q ss_pred CEEEEcC--eeEEEEEEEcC---CCCccceecCCCCeeC
Q 004746 699 DVVVCGE--AFGKVRALFDD---SGNRVDEAGPSIPVQV 732 (732)
Q Consensus 699 D~Iv~G~--~~gkVrsI~~~---~g~~V~~A~pG~~V~I 732 (732)
|.|.... ...+|..++.. .-+.+++|.||+.|.|
T Consensus 328 ~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~ 366 (528)
T 3tr5_A 328 MKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGL 366 (528)
T ss_dssp EEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEE
T ss_pred CEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEE
Confidence 9999853 44577776542 3457999999998753
No 24
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.93 E-value=6.7e-25 Score=255.13 Aligned_cols=244 Identities=24% Similarity=0.287 Sum_probs=187.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc------------c------cccCCceeeeeeEEEEee---cCCcceeEEEE
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA------------A------AEAGGITQGIGAYKVQVP---VDGKLQPCVFL 547 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~------------v------se~~GtTrdI~~y~v~i~---idgk~i~ItLI 547 (732)
.+.++|+|+||.|||||||+++|+..... . ....++|+......+.+. .++..+.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45689999999999999999999743110 0 114567776655554432 12345889999
Q ss_pred eCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCCC-
Q 004746 548 DTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP- 625 (732)
Q Consensus 548 DTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~~- 625 (732)
|||||.+|..++.+++..+|++|+|||++++...++.+++.++...++|+|+|+||+|+...+..++..++... +...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~~~ 167 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPV 167 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCCce
Confidence 99999999999999999999999999999999999999999998889999999999999877766666655432 1000
Q ss_pred -----------------------CCC------------------------------------------------------
Q 004746 626 -----------------------EDW------------------------------------------------------ 628 (732)
Q Consensus 626 -----------------------e~~------------------------------------------------------ 628 (732)
..|
T Consensus 168 ~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~~ 247 (704)
T 2rdo_7 168 PLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAE 247 (704)
T ss_pred eEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHH
Confidence 000
Q ss_pred -----------CCCCCEEEEecCCCCCHHHHHHHHHHHHhhhh------------------hccCCCCCccceEEEEeec
Q 004746 629 -----------GGDIPMVQISALKGEKVDDLLETIMLVAELQE------------------LKANPHRNAKGTVIEAGLH 679 (732)
Q Consensus 629 -----------gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~------------------lk~~p~r~a~g~Vies~~d 679 (732)
+.-+|++..||+++.|++.|++.|......+. ...+++.++.+.|+++..+
T Consensus 248 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d 327 (704)
T 2rdo_7 248 IKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATD 327 (704)
T ss_pred HHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEEEc
Confidence 01257999999999999999999997653321 1123567889999999999
Q ss_pred cCCCceEEEEEEeeEEecCCEEEEcC--eeEEE---EEEEcCCCCccceecCCCCeeC
Q 004746 680 KSKGPVATFILQNGTLKKGDVVVCGE--AFGKV---RALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 680 kgrG~VatglV~~GtLk~GD~Iv~G~--~~gkV---rsI~~~~g~~V~~A~pG~~V~I 732 (732)
+++|.++.++|.+|+|+.||.|.... ...+| ..|.....+.+++|.||+.|.|
T Consensus 328 ~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i 385 (704)
T 2rdo_7 328 PFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAA 385 (704)
T ss_pred CCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEE
Confidence 99999999999999999999999853 22344 4444444578999999998864
No 25
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.93 E-value=2e-25 Score=252.98 Aligned_cols=240 Identities=22% Similarity=0.277 Sum_probs=177.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc----------------------cccccCCceeeeeeEEEEeecCCcceeEEE
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV----------------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVF 546 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~----------------------~vse~~GtTrdI~~y~v~i~idgk~i~ItL 546 (732)
.+..+|+|+||.+||||||.++|+...- .....+|||+......+. ++++.|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~----~~~~~iNl 104 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP----YRDRVVNL 104 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE----ETTEEEEE
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE----ECCEEEEE
Confidence 3557999999999999999999962110 123456777665544443 35679999
Q ss_pred EeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCCC
Q 004746 547 LDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP 625 (732)
Q Consensus 547 IDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~~ 625 (732)
||||||.+|.....+.++.+|++|+|||+.+|++.|+..+|+++...++|+|+++||+|...++..+...++.+. +...
T Consensus 105 IDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~ 184 (548)
T 3vqt_A 105 LDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIEC 184 (548)
T ss_dssp ECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEE
T ss_pred EeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999988887776542 1000
Q ss_pred -----------------------------CC-------------------------------------------------
Q 004746 626 -----------------------------ED------------------------------------------------- 627 (732)
Q Consensus 626 -----------------------------e~------------------------------------------------- 627 (732)
..
T Consensus 185 ~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~ 264 (548)
T 3vqt_A 185 APMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYL 264 (548)
T ss_dssp EESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred EeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHH
Confidence 00
Q ss_pred CCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhc-------cCCCCCccceEEEEeec---cCCCceEEEEEEeeEEec
Q 004746 628 WGGDIPMVQISALKGEKVDDLLETIMLVAELQELK-------ANPHRNAKGTVIEAGLH---KSKGPVATFILQNGTLKK 697 (732)
Q Consensus 628 ~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk-------~~p~r~a~g~Vies~~d---kgrG~VatglV~~GtLk~ 697 (732)
-+.-+|++..||+++.||+.|++.|......+.-. ...+.++.+.|+.+..+ +.+|.++.++|.+|+|+.
T Consensus 265 ~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~ 344 (548)
T 3vqt_A 265 KGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTR 344 (548)
T ss_dssp TTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESCEET
T ss_pred hCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecceecC
Confidence 01125788999999999999999999765433211 12245678889888766 689999999999999999
Q ss_pred CCEEEEcC--eeEEEEEEEc---CCCCccceecCCCCeeC
Q 004746 698 GDVVVCGE--AFGKVRALFD---DSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 698 GD~Iv~G~--~~gkVrsI~~---~~g~~V~~A~pG~~V~I 732 (732)
|+.|.... ...+|..++. ..-..+++|.||+.|.|
T Consensus 345 g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai 384 (548)
T 3vqt_A 345 GMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGI 384 (548)
T ss_dssp TCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEE
T ss_pred CCEEEeeccccccccchhhhhccccccccCEEecCCEEEe
Confidence 99998833 3334444443 33356999999998754
No 26
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.93 E-value=4.7e-25 Score=248.98 Aligned_cols=239 Identities=22% Similarity=0.268 Sum_probs=176.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccc----------------------cccCCceeeeeeEEEEeecCCcceeEEEE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAA----------------------AEAGGITQGIGAYKVQVPVDGKLQPCVFL 547 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~v----------------------se~~GtTrdI~~y~v~i~idgk~i~ItLI 547 (732)
+.++|+|+||+|||||||+++|+...... ....|+|.......+. ..++.++||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~----~~~~~i~li 87 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFP----YHDCLVNLL 87 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEE----ETTEEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEE----ECCeEEEEE
Confidence 45799999999999999999998532110 1133444443333322 345789999
Q ss_pred eCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CC---
Q 004746 548 DTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GL--- 623 (732)
Q Consensus 548 DTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl--- 623 (732)
|||||++|...+.+++..+|++|+|||+++++..++.+++..+...++|+|+++||+|+...+..+...++.+. +.
T Consensus 88 DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCA 167 (529)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEE
T ss_pred ECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999998889999999999999877765555554431 10
Q ss_pred --------------------------CC--CC------------------------------------------------
Q 004746 624 --------------------------MP--ED------------------------------------------------ 627 (732)
Q Consensus 624 --------------------------~~--e~------------------------------------------------ 627 (732)
.. ..
T Consensus 168 ~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 247 (529)
T 2h5e_A 168 PITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFL 247 (529)
T ss_dssp ESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred ceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHH
Confidence 00 00
Q ss_pred CCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhcc------CC-CCCccceEEEEee---ccCCCceEEEEEEeeEEec
Q 004746 628 WGGDIPMVQISALKGEKVDDLLETIMLVAELQELKA------NP-HRNAKGTVIEAGL---HKSKGPVATFILQNGTLKK 697 (732)
Q Consensus 628 ~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~------~p-~r~a~g~Vies~~---dkgrG~VatglV~~GtLk~ 697 (732)
-+..+|+++.||++|.||+.|++.|......+.... .| +.++.+.|+.+.. ++++|.++.++|.+|+|+.
T Consensus 248 ~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~ 327 (529)
T 2h5e_A 248 AGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEK 327 (529)
T ss_dssp TTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEEESCEET
T ss_pred hCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEecCeEcC
Confidence 011247899999999999999999997654332111 11 3577888998865 3568999999999999999
Q ss_pred CCEEEEcC--eeEEEEEEEcCC---CCccceecCCCCeeC
Q 004746 698 GDVVVCGE--AFGKVRALFDDS---GNRVDEAGPSIPVQV 732 (732)
Q Consensus 698 GD~Iv~G~--~~gkVrsI~~~~---g~~V~~A~pG~~V~I 732 (732)
||.|.... ...+|.+|+... .+.+++|.||+.|.|
T Consensus 328 g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i 367 (529)
T 2h5e_A 328 GMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGL 367 (529)
T ss_dssp TCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEE
T ss_pred CCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEE
Confidence 99999843 456888887642 367999999998764
No 27
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.92 E-value=1.3e-24 Score=252.15 Aligned_cols=239 Identities=25% Similarity=0.283 Sum_probs=182.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc------------c------cccCCceeeeeeEEEEeecCCcceeEEEEeCCC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA------------A------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~------------v------se~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG 551 (732)
+.++|+|+|++|||||||+++|+..... . ....++|+......+.+ ..+.++||||||
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~----~~~~i~liDTPG 86 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW----KDHRINIIDTPG 86 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE----TTEEEEEECCCS
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE----CCeEEEEEECcC
Confidence 4578999999999999999999842110 0 11446676655444433 357899999999
Q ss_pred ccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCCC-----
Q 004746 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP----- 625 (732)
Q Consensus 552 hE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~~----- 625 (732)
|.+|...+.+++..+|++|+|||++++...++...+.++...++|+|+|+||+|+...+..+...++.+. +...
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~ 166 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQL 166 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEE
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceec
Confidence 9999999999999999999999999999999999999998899999999999999887777777766552 1100
Q ss_pred -------------------CCCC---------------------------------------------------------
Q 004746 626 -------------------EDWG--------------------------------------------------------- 629 (732)
Q Consensus 626 -------------------e~~g--------------------------------------------------------- 629 (732)
..|.
T Consensus 167 Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~ 246 (691)
T 1dar_A 167 PIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAI 246 (691)
T ss_dssp EESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHH
T ss_pred cccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHH
Confidence 0000
Q ss_pred -------CCCCEEEEecCCCCCHHHHHHHHHHHHhhhhh----------------ccCCCCCccceEEEEeeccCCCceE
Q 004746 630 -------GDIPMVQISALKGEKVDDLLETIMLVAELQEL----------------KANPHRNAKGTVIEAGLHKSKGPVA 686 (732)
Q Consensus 630 -------g~ipiVeVSAKtGeGIdeLfe~Ii~lael~~l----------------k~~p~r~a~g~Vies~~dkgrG~Va 686 (732)
.-+|++..||++|.|++.|++.|......+.- ..+++.++.+.|+++..++++|.++
T Consensus 247 ~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~ 326 (691)
T 1dar_A 247 RKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLT 326 (691)
T ss_dssp HHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEE
T ss_pred HHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEE
Confidence 11579999999999999999999976543221 1236778999999999999999999
Q ss_pred EEEEEeeEEecCCEEEEcC-----eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 687 TFILQNGTLKKGDVVVCGE-----AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 687 tglV~~GtLk~GD~Iv~G~-----~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
.++|.+|+|+.||.|.... ..+++..|.....+.+++|.||+.|.|
T Consensus 327 ~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i 377 (691)
T 1dar_A 327 FIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAV 377 (691)
T ss_dssp EEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEE
T ss_pred EEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEE
Confidence 9999999999999999743 334566666555567999999998864
No 28
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.92 E-value=6.4e-25 Score=253.73 Aligned_cols=238 Identities=23% Similarity=0.265 Sum_probs=182.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccc------------------cCCceeeeeeEEEEeecCCcceeEEEEeCC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAE------------------AGGITQGIGAYKVQVPVDGKLQPCVFLDTP 550 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse------------------~~GtTrdI~~y~v~i~idgk~i~ItLIDTP 550 (732)
.+..+|+|+|+.|||||||+++|+........ ..++|....... + ....+.++|||||
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~--~--~~~~~~~nliDTp 82 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAP--L--LFRGHRVFLLDAP 82 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEE--E--EETTEEEEEEECC
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceE--E--eeCCEEEEEEeCC
Confidence 45678999999999999999999843221100 224444332222 2 2345789999999
Q ss_pred CccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHH-cC-------
Q 004746 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS-IG------- 622 (732)
Q Consensus 551 GhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~e-lg------- 622 (732)
||++|...+.++++.+|++++|+|+++++..++.+++..+...++|+|+++||+|+. ....+..+++.. ++
T Consensus 83 G~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~~~~~~~~ 161 (665)
T 2dy1_A 83 GYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLGPILPIDL 161 (665)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHCSEEECEE
T ss_pred CccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhCCcceEEe
Confidence 999999999999999999999999999999999999999988899999999999998 766666666554 22
Q ss_pred -------------C-CCCCC------------------------------------------------------------
Q 004746 623 -------------L-MPEDW------------------------------------------------------------ 628 (732)
Q Consensus 623 -------------l-~~e~~------------------------------------------------------------ 628 (732)
+ ....|
T Consensus 162 Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~ 241 (665)
T 2dy1_A 162 PLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEA 241 (665)
T ss_dssp EEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred eecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 0 00000
Q ss_pred ---CCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC
Q 004746 629 ---GGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE 705 (732)
Q Consensus 629 ---gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~ 705 (732)
+..++++++||++|.||++||++|......+.- ..++.++.+.|+++..++++|.++.++|.+|+|+.||.|....
T Consensus 242 ~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~-~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~ 320 (665)
T 2dy1_A 242 VRRGLLYPVALASGEREIGVLPLLELILEALPSPTE-RFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA 320 (665)
T ss_dssp HHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHH-HHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTT
T ss_pred HHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCccc-cCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEcCC
Confidence 012589999999999999999999875432211 1167788999999999999999999999999999999999876
Q ss_pred eeEEEEEEEc---CCCCccceecCCCCeeC
Q 004746 706 AFGKVRALFD---DSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 706 ~~gkVrsI~~---~~g~~V~~A~pG~~V~I 732 (732)
...+|..|+. ...+.+++|.||+.|.|
T Consensus 321 ~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i 350 (665)
T 2dy1_A 321 GQVRLPHLYVPMGKDLLEVEEAEAGFVLGV 350 (665)
T ss_dssp SCEEESSEEEEETTEEEEESCEETTCEEEE
T ss_pred CeEEEeEEEEEeCCCeeECCEECCCCEEEE
Confidence 5556666654 23457999999998864
No 29
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.91 E-value=6.6e-26 Score=260.85 Aligned_cols=237 Identities=26% Similarity=0.303 Sum_probs=184.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc------------------ccccCCceeeeeeEEEEeecCCcceeEEEEeCCC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~------------------vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG 551 (732)
+..||+|+||.+||||||+++|+...-. ....+|+|+...... +..+++.|+||||||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~----~~~~~~~iNlIDTPG 76 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS----FQWENTKVNIIDTPG 76 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCC----CBCSSCBCCCEECCC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEE----EEECCEEEEEEECCC
Confidence 3568999999999999999999732111 112346676544333 344667899999999
Q ss_pred ccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCCC--C--
Q 004746 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP--E-- 626 (732)
Q Consensus 552 hE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~~--e-- 626 (732)
|.+|.....+.++.+|++|+|||+.+|++.|+..+++++...++|+|+++||+|...++......++.+. +... .
T Consensus 77 H~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~ 156 (638)
T 3j25_A 77 HMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK 156 (638)
T ss_dssp SSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred cHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence 9999999999999999999999999999999999999999999999999999999988887777766542 1000 0
Q ss_pred ----------C-----------------------------------------CCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 627 ----------D-----------------------------------------WGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 627 ----------~-----------------------------------------~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
. .+.-+|++..||+++.||+.|++.|...
T Consensus 157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~ 236 (638)
T 3j25_A 157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK 236 (638)
T ss_dssp CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence 0 0123678899999999999999999864
Q ss_pred HhhhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC-eeEEEEEEEcCCC---CccceecCCCCee
Q 004746 656 AELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE-AFGKVRALFDDSG---NRVDEAGPSIPVQ 731 (732)
Q Consensus 656 ael~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~-~~gkVrsI~~~~g---~~V~~A~pG~~V~ 731 (732)
. +.....+..++.+.|+++..++.+|.++.++|.+|+|+.||.|.+.. ...+|..++...| ..+++|.+|+.|.
T Consensus 237 ~--p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~ 314 (638)
T 3j25_A 237 F--YSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTEMYTSINGELCKIDRAYSGEIVI 314 (638)
T ss_dssp C--CCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCCSSBCCCCSSCCCCBSCCCTTBCCCCSC
T ss_pred c--cCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCcceeEEeeecccccccccccccccceEEE
Confidence 3 33334456778899999999999999999999999999999987732 2334555544333 3588999999875
Q ss_pred C
Q 004746 732 V 732 (732)
Q Consensus 732 I 732 (732)
|
T Consensus 315 i 315 (638)
T 3j25_A 315 L 315 (638)
T ss_dssp C
T ss_pred E
Confidence 4
No 30
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.90 E-value=1e-23 Score=245.12 Aligned_cols=243 Identities=25% Similarity=0.312 Sum_probs=181.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCC--------c----------cccccCCceeeeeeEEEEeec---CCcceeEEEEe
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTK--------V----------AAAEAGGITQGIGAYKVQVPV---DGKLQPCVFLD 548 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k--------~----------~vse~~GtTrdI~~y~v~i~i---dgk~i~ItLID 548 (732)
+..+|+|+||.+||||||.++|+... + .....+|||+.....++.+.. +.+++.|+|||
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 44689999999999999999997211 1 013456777765555554421 22468999999
Q ss_pred CCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCCC--
Q 004746 549 TPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP-- 625 (732)
Q Consensus 549 TPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~~-- 625 (732)
||||.+|.....+.++.+|++|+|||+.+|++.|+..+|+++...++|+|+++||+|...++......++... +...
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~~~~~ 171 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVP 171 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCSCEEE
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcccceee
Confidence 9999999999999999999999999999999999999999999999999999999999888877777666531 1000
Q ss_pred ---------------------------CC---------------------------------------------------
Q 004746 626 ---------------------------ED--------------------------------------------------- 627 (732)
Q Consensus 626 ---------------------------e~--------------------------------------------------- 627 (732)
..
T Consensus 172 ~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~~ 251 (709)
T 4fn5_A 172 VQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAEI 251 (709)
T ss_dssp SEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHHH
T ss_pred eecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHHHH
Confidence 00
Q ss_pred ---------CCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhh------------------hccCCCCCccceEEEEeecc
Q 004746 628 ---------WGGDIPMVQISALKGEKVDDLLETIMLVAELQE------------------LKANPHRNAKGTVIEAGLHK 680 (732)
Q Consensus 628 ---------~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~------------------lk~~p~r~a~g~Vies~~dk 680 (732)
.+.-+|++..||.++.|+..|++.|......+. ...+++.++.+.|+....++
T Consensus 252 ~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~ 331 (709)
T 4fn5_A 252 KEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDP 331 (709)
T ss_dssp HHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBT
T ss_pred HHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEeeccc
Confidence 011246788999999999999999987654321 12456678899999999999
Q ss_pred CCCceEEEEEEeeEEecCCEEEEcC--e---eEEEEEEEcCCCCccceecCCCCeeC
Q 004746 681 SKGPVATFILQNGTLKKGDVVVCGE--A---FGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 681 grG~VatglV~~GtLk~GD~Iv~G~--~---~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
.+|.++.++|.+|+|+.||.|.... . .+++..+....-..+++|.+|+.|.|
T Consensus 332 ~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i 388 (709)
T 4fn5_A 332 FVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAAL 388 (709)
T ss_dssp TTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEE
T ss_pred CCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeee
Confidence 9999999999999999999997632 1 23444444444457999999998764
No 31
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.90 E-value=3.3e-23 Score=240.57 Aligned_cols=240 Identities=25% Similarity=0.281 Sum_probs=180.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC--Ccc----------cc------ccCCceeeeeeEEEEeecCCcceeEEEEeCC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT--KVA----------AA------EAGGITQGIGAYKVQVPVDGKLQPCVFLDTP 550 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~--k~~----------vs------e~~GtTrdI~~y~v~i~idgk~i~ItLIDTP 550 (732)
.+.++|+|+|++|||||||+++|+.. .+. .. ..+++|+......+.+ .++.++|||||
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~----~~~~i~liDTP 83 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW----EGHRVNIIDTP 83 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE----TTEEEEEECCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE----CCeeEEEEECc
Confidence 34578999999999999999999842 110 01 1346666554444332 35789999999
Q ss_pred CccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHc-CCC-----
Q 004746 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLM----- 624 (732)
Q Consensus 551 GhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~el-gl~----- 624 (732)
||.+|...+.+++..+|++|+|+|++++...++...+..+...++|+|+|+||+|+...+..+...++... +..
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~ 163 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQ 163 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESE
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEE
Confidence 99999999999999999999999999999999999999998889999999999999887766666655442 110
Q ss_pred ----------------C---CCCC--------------------------------------------------------
Q 004746 625 ----------------P---EDWG-------------------------------------------------------- 629 (732)
Q Consensus 625 ----------------~---e~~g-------------------------------------------------------- 629 (732)
. ..|.
T Consensus 164 ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~ 243 (693)
T 2xex_A 164 LPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEA 243 (693)
T ss_dssp EEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHH
T ss_pred eecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHH
Confidence 0 0000
Q ss_pred --------CCCCEEEEecCCCCCHHHHHHHHHHHHhhhhhc------------------cCCCCCccceEEEEeeccCCC
Q 004746 630 --------GDIPMVQISALKGEKVDDLLETIMLVAELQELK------------------ANPHRNAKGTVIEAGLHKSKG 683 (732)
Q Consensus 630 --------g~ipiVeVSAKtGeGIdeLfe~Ii~lael~~lk------------------~~p~r~a~g~Vies~~dkgrG 683 (732)
.-+|++..||++|.|++.|++.|......+.-. .+++.++.+.|+++..++.+|
T Consensus 244 l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g 323 (693)
T 2xex_A 244 IRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVG 323 (693)
T ss_dssp HHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTE
T ss_pred HHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCCc
Confidence 114799999999999999999999865433211 135678899999999999999
Q ss_pred ceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCC---CCccceecCCCCeeC
Q 004746 684 PVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDS---GNRVDEAGPSIPVQV 732 (732)
Q Consensus 684 ~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~---g~~V~~A~pG~~V~I 732 (732)
.++.++|.+|+|+.||.|.... ...+|..|+... -..+++|.||+.|.|
T Consensus 324 ~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i 377 (693)
T 2xex_A 324 KLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAA 377 (693)
T ss_dssp EEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEE
T ss_pred eEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEE
Confidence 9999999999999999999843 334666664433 356999999998754
No 32
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=9.9e-25 Score=243.52 Aligned_cols=226 Identities=15% Similarity=0.153 Sum_probs=138.4
Q ss_pred cchHHHHHHHhcCCHHHHHHHHHhCCCcccccccCCHHHHHHhhhhcCCeeeecCchhhHHHhhhccccChhhhhcccCC
Q 004746 411 GMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLEDR 490 (732)
Q Consensus 411 ~iav~qLag~Ls~~i~eiik~L~~lG~~~~in~~Ld~e~ie~ia~e~~~~~i~~~~~~ieell~~~~~~~e~~~~~l~~r 490 (732)
.++++||.|.|+..+.++++.|+.+...++...++++|+++..........+......++.+ ......+...+.
T Consensus 159 ~~a~~~l~G~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~------~~~~~~~~~~r~ 232 (476)
T 3gee_A 159 RTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRL------IDSYQHGRIVSE 232 (476)
T ss_dssp HHHHHHHHTHHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHHHHHHHHHHHHHHHH------HHHHHhhHhhcC
Confidence 47999999999999999999999986666666666554432111110001111111112222 223344555667
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhh--------cc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMR--------AR 561 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r--------~r 561 (732)
+++|+|+|++|+|||||+|+|++... .++..+++|+++....+.+ .++.++||||||+..+...+ ..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~----~g~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH----DKTMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEE----TTEEEEEEC--------------------C
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE----CCeEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 88999999999999999999998754 4778889999875555543 34689999999987765332 34
Q ss_pred cccccCeEEEEEEecCCCCh----hhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEE
Q 004746 562 GARVTDIAVIVVAADDGIRP----QTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQI 637 (732)
Q Consensus 562 ~~~~ADiVILVVDasdgi~~----qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeV 637 (732)
++..+|++|+|||++++... ++.+++..+. ++|+|+|+||+|+........ +.+...++ .++++|
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~-~~l~~~~~--------~~~i~v 377 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI-RAIADGTG--------TEVIGI 377 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH-HHHHHHHT--------SCEEEC
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH-HHHHhcCC--------CceEEE
Confidence 67899999999999998776 4555555444 789999999999976544322 33333211 479999
Q ss_pred ecCCCCCHHHHHHHHHHHHh
Q 004746 638 SALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 638 SAKtGeGIdeLfe~Ii~lae 657 (732)
||++|+||++|+++|.....
T Consensus 378 SAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 378 SALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp BTTTTBSHHHHHHHHTHHHH
T ss_pred EECCCCCHHHHHHHHHHHHh
Confidence 99999999999999987654
No 33
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.89 E-value=1e-22 Score=204.50 Aligned_cols=156 Identities=20% Similarity=0.220 Sum_probs=115.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.+||+|+|++|||||||+++|+...+...+.+ |.+.+++...+.+++..+.+.||||+|++.|..++..+++.+|++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~--Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA--TIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCC--ccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 457999999999999999999999888766554 555666666777788889999999999999999999999999999
Q ss_pred EEEEEecCCCChh----hHHHHHHHHhcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQ----TNEAIAHAKAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~q----t~EiL~~ak~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|+|||+++....+ +.+.+......++|+|||+||+|+.. ...++..+...+++ ++|++|||++|
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~---------~~~~e~SAktg 160 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN---------VMFIETSAKAG 160 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------CEEEEEBTTTT
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC---------CeeEEEeCCCC
Confidence 9999999743222 22222333345789999999999954 23344444434433 57999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.||+++|+.|+...
T Consensus 161 ~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 161 YNVKQLFRRVAAAL 174 (216)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998653
No 34
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.88 E-value=3e-22 Score=190.00 Aligned_cols=158 Identities=22% Similarity=0.183 Sum_probs=114.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccc--------cCCceeeeeeEEEEe-ecCCcceeEEEEeCCCccccchhhc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAE--------AGGITQGIGAYKVQV-PVDGKLQPCVFLDTPGHEAFGAMRA 560 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse--------~~GtTrdI~~y~v~i-~idgk~i~ItLIDTPGhE~f~~~r~ 560 (732)
+.++|+|+|++|+|||||+++|.+....... ....|....++...+ .+++..+.+.||||||++.|..++.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 92 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK 92 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence 3579999999999999999777654322211 122355544444434 4567788999999999999999999
Q ss_pred ccccccCeEEEEEEecCCCChhhHHHHHHH----Hh-----cCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCC
Q 004746 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHA----KA-----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGG 630 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt~EiL~~a----k~-----~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg 630 (732)
.+++.+|++|||||++++...+..+.+..+ .. .++|+|+|+||+|+.... .++..+.+...
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~--------- 163 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE--------- 163 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTT---------
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhc---------
Confidence 999999999999999965444444333322 22 478999999999997653 33333333222
Q ss_pred CC-CEEEEecCCCCCHHHHHHHHHHHH
Q 004746 631 DI-PMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 631 ~i-piVeVSAKtGeGIdeLfe~Ii~la 656 (732)
.+ +++++||++|.||+++|++|....
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 24 899999999999999999998754
No 35
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.88 E-value=1e-21 Score=182.62 Aligned_cols=159 Identities=21% Similarity=0.183 Sum_probs=114.4
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccccc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
...+.++|+|+|++|+|||||+++|....+.. .. .|.++....+. ++ .+.+.||||||++.|..++..++..+
T Consensus 3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~--~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~ 75 (171)
T 1upt_A 3 HMTREMRILILGLDGAGKTTILYRLQVGEVVT-TI--PTIGFNVETVT--YK--NLKFQVWDLGGLTSIRPYWRCYYSNT 75 (171)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CC--CCSSEEEEEEE--ET--TEEEEEEEECCCGGGGGGGGGGCTTC
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCC-cC--CcCccceEEEE--EC--CEEEEEEECCCChhhhHHHHHHhccC
Confidence 35567899999999999999999999776642 22 24443333333 23 57899999999999999999999999
Q ss_pred CeEEEEEEecCCCChh-hHHHHHHHHh----cCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 567 DIAVIVVAADDGIRPQ-TNEAIAHAKA----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 567 DiVILVVDasdgi~~q-t~EiL~~ak~----~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
|++|+|||+++..... ..+++..+.. .++|+++|+||+|+.... ..++...+...... . ..++++++||+
T Consensus 76 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~Sa~ 151 (171)
T 1upt_A 76 DAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALK--D--RKWQIFKTSAT 151 (171)
T ss_dssp SEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCT--T--SCEEEEECCTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhcc--C--CceEEEECcCC
Confidence 9999999999764332 2233333322 478999999999996643 33343333221111 1 23579999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLVA 656 (732)
Q Consensus 641 tGeGIdeLfe~Ii~la 656 (732)
+|.||++++++|....
T Consensus 152 ~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 152 KGTGLDEAMEWLVETL 167 (171)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998654
No 36
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=187.16 Aligned_cols=158 Identities=19% Similarity=0.197 Sum_probs=118.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
...++|+|+|++|+|||||+++|++..+.....+.++.+... ..+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKI--RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEE--EEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEE--EEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 345799999999999999999999888776666666655433 334456777899999999999999999999999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHH---hcCCCEEEEEeCCCCCCCC---hHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAK---AAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak---~~~vPIIVViNKiDL~~a~---~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+|+|||+++....+. ..++..+. ..++|+|+|+||+|+.... ........... .++++++||++
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 162 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL---------GIPFLETSAKN 162 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT---------TCCEEEECTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHc---------CCcEEEEeCCC
Confidence 999999997432221 22333332 2378999999999996432 22333333333 25799999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 004746 642 GEKVDDLLETIMLVAE 657 (732)
Q Consensus 642 GeGIdeLfe~Ii~lae 657 (732)
|.||+++|++|.....
T Consensus 163 g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 163 ATNVEQSFMTMAAEIK 178 (196)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987543
No 37
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.87 E-value=9.8e-22 Score=183.93 Aligned_cols=158 Identities=19% Similarity=0.211 Sum_probs=116.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
...++|+|+|++|+|||||+++|++..+.....++++.+... ..+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKI--RTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEE--EEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEE--EEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 345799999999999999999999888776666666655433 334456777899999999999999999999999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHHh--cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAKA--AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak~--~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|+|||+++....+. ..++..+.. .++|+|+|+||+|+... ............+ ++++++||++|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~ 155 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMG---------IQLFETSAKEN 155 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------CCEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcC---------CeEEEEECCCC
Confidence 999999997433222 223333332 25899999999998542 2233333333332 57999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 004746 643 EKVDDLLETIMLVAE 657 (732)
Q Consensus 643 eGIdeLfe~Ii~lae 657 (732)
.||+++|++|.....
T Consensus 156 ~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 156 VNVEEMFNCITELVL 170 (181)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987543
No 38
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=2.5e-23 Score=231.41 Aligned_cols=223 Identities=19% Similarity=0.232 Sum_probs=149.6
Q ss_pred cchHHHHHHHhcCCHHHHHHHHHhCCCcccccccCCHHHHHHhhhhcCCeeeecCchhhHHHhhh-ccccChhhhhcccC
Q 004746 411 GMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARK-KDLFDEEDLDKLED 489 (732)
Q Consensus 411 ~iav~qLag~Ls~~i~eiik~L~~lG~~~~in~~Ld~e~ie~ia~e~~~~~i~~~~~~ieell~~-~~~~~e~~~~~l~~ 489 (732)
.++++||.|.|+..+.++++.|+.+...++...++++ +++ +.....+. ..+..+... ..+......+...+
T Consensus 151 ~~a~~~l~g~~~~~~~~~r~~l~~~~a~iEa~iDf~e-d~~----~~~~~~~~---~~i~~l~~~l~~~~~~~~~~~~~r 222 (462)
T 3geh_A 151 QTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFEE-DLP----PLDDEAII---SDIENIAAEISQLLATKDKGELLR 222 (462)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHTTSSS-SSC----CCCTTTHH---HHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhccccc-cCC----hhhHHHHH---HHHHHHHHHHHHHHHHhhhhhhhc
Confidence 4799999999999999999999998555555444443 111 11111111 111111111 12233444555666
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh--------hc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM--------RA 560 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~--------r~ 560 (732)
.+++|+|+|++|+|||||+|+|++..+. +++.+++|+++....+.+ + ++.++||||||+..+... ..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~--~--g~~v~liDT~G~~~~~~~ve~~gi~~~~ 298 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV--G--GIPVQVLDTAGIRETSDQVEKIGVERSR 298 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE--T--TEEEEECC--------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE--C--CEEEEEEECCccccchhHHHHHHHHHHh
Confidence 7889999999999999999999976544 677889998875555543 3 468999999997655322 22
Q ss_pred ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
.++..+|++|+|+|++++...+..+++..+. ..|+|+|+||+|+....... ....+....+++++||+
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~----------~~~~~~~~~~~i~iSAk 366 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT----------SLEYPENITQIVHTAAA 366 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST----------TCCCCTTCCCEEEEBTT
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH----------HHHHhccCCcEEEEECC
Confidence 3568899999999999988888877777765 47999999999996532111 11222235689999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 004746 641 KGEKVDDLLETIMLVAE 657 (732)
Q Consensus 641 tGeGIdeLfe~Ii~lae 657 (732)
+|.||++|+++|.....
T Consensus 367 tg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 367 QKQGIDSLETAILEIVQ 383 (462)
T ss_dssp TTBSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987654
No 39
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.87 E-value=7.3e-22 Score=182.98 Aligned_cols=155 Identities=18% Similarity=0.212 Sum_probs=111.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+|+|++|+|||||+++|++..+.....+.++.++ ....+.+++..+.+.||||||++.|..++..++..+|++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF--KIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCE--EEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeE--EEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 46899999999999999999998877655555444443 3344446677789999999999999988888999999999
Q ss_pred EEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCC--ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCC
Q 004746 571 IVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (732)
Q Consensus 571 LVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~a--~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeG 644 (732)
+|+|+++...... ..++..+.. .++|+++|+||+|+... ..+.........+ ++++++||++|.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~g 151 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG---------IPFIESSAKNDDN 151 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT---------CCEEECBTTTTBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcC---------CeEEEEECCCCCC
Confidence 9999987433222 233333332 37899999999999542 2233333333332 5799999999999
Q ss_pred HHHHHHHHHHHH
Q 004746 645 VDDLLETIMLVA 656 (732)
Q Consensus 645 IdeLfe~Ii~la 656 (732)
+++++++|....
T Consensus 152 v~~l~~~l~~~~ 163 (170)
T 1g16_A 152 VNEIFFTLAKLI 163 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 40
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.87 E-value=9.6e-22 Score=182.60 Aligned_cols=155 Identities=18% Similarity=0.167 Sum_probs=109.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|++|+|||||+++|++..+.....+.++.+ +....+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGAS--FLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCE--EEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceE--EEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45799999999999999999999887665444444333 3444555677788999999999999999999999999999
Q ss_pred EEEEEecCCCChhh-HHHHHHH---HhcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQT-NEAIAHA---KAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~~a---k~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|+|+|+++....+. ..++..+ ...++|+++|+||+|+.. ...+......... .++++++||++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~ 153 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV---------GAKHYHTSAKQN 153 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEEEBTTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHc---------CCeEEEecCCCC
Confidence 99999987432222 2222222 235789999999999854 2233333333332 257999999999
Q ss_pred CCHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLV 655 (732)
Q Consensus 643 eGIdeLfe~Ii~l 655 (732)
.||+++|++|...
T Consensus 154 ~gi~~l~~~l~~~ 166 (170)
T 1z08_A 154 KGIEELFLDLCKR 166 (170)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999864
No 41
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.87 E-value=1.1e-21 Score=184.46 Aligned_cols=156 Identities=18% Similarity=0.205 Sum_probs=116.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|++..+.....+.++ ..++...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG--AAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSC--CSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCce--eEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 3457899999999999999999998877654444333 33344444456777899999999999999999899999999
Q ss_pred EEEEEEecCCCChh-hHHHHHHHHh---cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 569 AVIVVAADDGIRPQ-TNEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 569 VILVVDasdgi~~q-t~EiL~~ak~---~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+|+|||+++....+ ..+++..+.. .++|+++|+||+|+... ..+......... .++++++||++
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 158 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN---------GLFFMETSAKT 158 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT---------TCEEEECCSSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHc---------CCEEEEEECCC
Confidence 99999998754322 2334444443 27889999999999542 233333333332 25799999999
Q ss_pred CCCHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLV 655 (732)
Q Consensus 642 GeGIdeLfe~Ii~l 655 (732)
|.||+++|++|...
T Consensus 159 g~gi~~l~~~l~~~ 172 (181)
T 2efe_B 159 ATNVKEIFYEIARR 172 (181)
T ss_dssp CTTHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999864
No 42
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.87 E-value=1.3e-21 Score=180.77 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=112.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+|+|++|+|||||+++|.+..+.....+.+. . .+...+.+++..+.+.||||||++.|..++..++..+|++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE--D-SYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSE--E-EEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc--c-eEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 46899999999999999999998776544433222 2 22344556777889999999999999999999999999999
Q ss_pred EEEEecCCCChhh-HHHHHHH----HhcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 571 IVVAADDGIRPQT-NEAIAHA----KAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 571 LVVDasdgi~~qt-~EiL~~a----k~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|||+++...... ..++..+ ...++|+++|+||+|+... ..+......... ..++++++||++|
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~ 151 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW--------CNCAFLESSAKSK 151 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT--------TSCEEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHc--------cCCcEEEecCCCC
Confidence 9999987422111 1222222 2347999999999999542 233333333332 1368999999999
Q ss_pred CCHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLV 655 (732)
Q Consensus 643 eGIdeLfe~Ii~l 655 (732)
.|+++++++|...
T Consensus 152 ~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 152 INVNEIFYDLVRQ 164 (167)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999864
No 43
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.87 E-value=2.3e-21 Score=183.51 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=114.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcc---------------------------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKL--------------------------- 541 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~--------------------------- 541 (732)
...++|+|+|++|+|||||+++|++..+.....+.+. ..++...+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIG--ASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCS--CEEEEEEEETTC-----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCcccc--ceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence 3568999999999999999999998877644444333 33333444444433
Q ss_pred ----------eeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhh-HHHHHHHHh-cCCCEEEEEeCCCCCC-
Q 004746 542 ----------QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQT-NEAIAHAKA-AGVPIVIAINKIDKDG- 608 (732)
Q Consensus 542 ----------i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt-~EiL~~ak~-~~vPIIVViNKiDL~~- 608 (732)
+.+.||||||++.|...+..++..+|++|||||+++....+. ..++..+.. .+.|+|+|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~ 162 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKF 162 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-C
T ss_pred cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccc
Confidence 789999999999999998899999999999999987543333 233333332 4689999999999532
Q ss_pred -CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 609 -ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 609 -a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
...++....+... .++++++||++|.||+++|++|....
T Consensus 163 ~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 163 QVDILEVQKYAQDN---------NLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp CSCHHHHHHHHHHT---------TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHc---------CCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 2334444444443 25799999999999999999998654
No 44
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.87 E-value=1.8e-21 Score=184.07 Aligned_cols=156 Identities=21% Similarity=0.224 Sum_probs=116.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|+...+.....+.++..+ .....+++..+.+.||||||++.|..++..++..+|+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY---LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE---EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee---EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 4567999999999999999999998776655544333322 3334457777889999999999999999999999999
Q ss_pred EEEEEEecCCCC-----hhhHHHHHHHHhcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 569 AVIVVAADDGIR-----PQTNEAIAHAKAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 569 VILVVDasdgi~-----~qt~EiL~~ak~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
+|+|||+++... .+..++.......++|+|+|+||+|+.. ...+........++ ++++++||+
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~---------~~~~~~Sa~ 163 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN---------IPYIETSAK 163 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT---------CCEEEEBCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC---------CeEEEeccC
Confidence 999999997422 2222222333346789999999999864 23333333333332 579999999
Q ss_pred -CCCCHHHHHHHHHHHH
Q 004746 641 -KGEKVDDLLETIMLVA 656 (732)
Q Consensus 641 -tGeGIdeLfe~Ii~la 656 (732)
+|.||+++|++|....
T Consensus 164 ~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 164 DPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp SSCBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 45
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.87 E-value=1.3e-21 Score=182.78 Aligned_cols=156 Identities=22% Similarity=0.190 Sum_probs=115.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|++..+.....+.+ ...++...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI--GVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSC--CCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc--ceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 345799999999999999999999887654433333 333334444456777899999999999999999999999999
Q ss_pred EEEEEEecCCCChhhH-HHHHHH---HhcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 569 AVIVVAADDGIRPQTN-EAIAHA---KAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 569 VILVVDasdgi~~qt~-EiL~~a---k~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+|+|||+++....+.. .++..+ ...++|+++|+||+|+.. ...++..+..... .++++++||++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 161 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN---------GLLFLEASAKT 161 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCEEEECCTTT
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEeCCC
Confidence 9999999875332222 222223 235789999999999953 2233444434333 25799999999
Q ss_pred CCCHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLV 655 (732)
Q Consensus 642 GeGIdeLfe~Ii~l 655 (732)
|.||+++|++|...
T Consensus 162 ~~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 162 GENVEDAFLEAAKK 175 (179)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999864
No 46
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.87 E-value=2e-21 Score=183.89 Aligned_cols=157 Identities=19% Similarity=0.171 Sum_probs=117.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|++..+.....+.++.+ ++...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVE--FGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEE--EEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE--EEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 345799999999999999999999888766555544444 334444456777899999999999999999999999999
Q ss_pred EEEEEEecCCCChhhH-HHH---HHHHhcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 569 AVIVVAADDGIRPQTN-EAI---AHAKAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 569 VILVVDasdgi~~qt~-EiL---~~ak~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+|+|||+++....+.. .++ ......++|+++|+||+|+.. ....+........ .++++++||++
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 156 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQEN---------ELMFLETSALT 156 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEECCTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEecCCC
Confidence 9999999874332222 222 223335789999999999853 2233333333332 25799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|.||+++|++|....
T Consensus 157 ~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 157 GENVEEAFVQCARKI 171 (186)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998654
No 47
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.87 E-value=9.1e-22 Score=188.09 Aligned_cols=161 Identities=19% Similarity=0.257 Sum_probs=113.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccc-cccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccccc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA-AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~v-se~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
....++|+|+|++|+|||||+++|++..+.. .+.+ |.++....+ ++..+.+.||||||++.|..++..++..+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 4456799999999999999999999888765 3333 333333332 34567899999999999999999999999
Q ss_pred CeEEEEEEecCCCChhh-HHHHHHHHhc-----------CCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCC
Q 004746 567 DIAVIVVAADDGIRPQT-NEAIAHAKAA-----------GVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIP 633 (732)
Q Consensus 567 DiVILVVDasdgi~~qt-~EiL~~ak~~-----------~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ip 633 (732)
|++|||||+++...... .+++..+... ++|+|+|+||+|+.... .+++...+....+ ... ..++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~--~~~~ 164 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTL-MGD--HPFV 164 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHH-HTT--SCEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhh-ccC--CeeE
Confidence 99999999997543222 2333333222 79999999999997643 3333333321100 011 2468
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHh
Q 004746 634 MVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 634 iVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
+++|||++|.||+++|++|.....
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 165 IFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHH
T ss_pred EEEeeCCCccCHHHHHHHHHHHHH
Confidence 999999999999999999987543
No 48
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.87 E-value=1.9e-21 Score=181.96 Aligned_cols=158 Identities=22% Similarity=0.226 Sum_probs=114.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
..+.++|+|+|++|+|||||+++|++..+.....+.+... + ...+.+++..+.+.||||||++.|..++..++..+|
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDS--Y-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEE--E-EEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCce--E-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 3456799999999999999999999887654443332222 2 233445677788999999999999999888999999
Q ss_pred eEEEEEEecCCCChh-hH----HHHHHHHhcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 568 IAVIVVAADDGIRPQ-TN----EAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 568 iVILVVDasdgi~~q-t~----EiL~~ak~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
++|+|||+++..... .. +++......++|+++|+||+|+... ..+......... .++++++||
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa 153 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASH---------HVAYFEASA 153 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEECBT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc---------CCeEEEecC
Confidence 999999998742211 11 2223333457899999999998542 222222222222 357999999
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 004746 640 LKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~lae 657 (732)
++|.||+++|++|.....
T Consensus 154 ~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 154 KLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987653
No 49
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.87 E-value=1.4e-21 Score=184.45 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=112.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|++|+|||||+++|+...+.....+.+... + ...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT--F-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE--E-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCcccc--E-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 35799999999999999999999777654443322222 2 33444577778899999999999998888999999999
Q ss_pred EEEEEecCCCChh-----hHHHHHHHHhcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 570 VIVVAADDGIRPQ-----TNEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 570 ILVVDasdgi~~q-----t~EiL~~ak~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
|+|||+++....+ ..+++..+...++|+|+|+||+|+... ..+......... .++++++||++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 152 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESW---------NAAFLESSAKE 152 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHT---------TCEEEECCTTS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHh---------CCcEEEEecCC
Confidence 9999998732222 122223333447899999999998542 233333333333 25799999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 004746 642 GEKVDDLLETIMLVAE 657 (732)
Q Consensus 642 GeGIdeLfe~Ii~lae 657 (732)
|.||+++|++|.....
T Consensus 153 ~~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 153 NQTAVDVFRRIILEAE 168 (181)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987553
No 50
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.87 E-value=5.9e-22 Score=187.39 Aligned_cols=156 Identities=21% Similarity=0.158 Sum_probs=89.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
..++|+|+|++|+|||||+++|.+..+.....++++.++. ...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFK--IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEE--EEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE--EEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 3579999999999999999999987766555555554433 33344567778999999999999999999999999999
Q ss_pred EEEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|||||+++....+. .+++..+.. .++|+|+|+||+|+... ..+.........+ ++++++||++|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~---------~~~~~~Sa~~~ 155 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG---------IKFMETSAKAN 155 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT---------CEEEECCC---
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcC---------CeEEEEeCCCC
Confidence 99999987433222 233333333 36899999999999642 2333333333332 57999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.||+++|++|....
T Consensus 156 ~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 156 INVENAFFTLARDI 169 (183)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
No 51
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=2.7e-21 Score=181.58 Aligned_cols=157 Identities=19% Similarity=0.201 Sum_probs=108.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccc-cccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAA-AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~v-se~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
.+.++|+|+|++|+|||||+++|++..+.. ...+.++.+ +....+.+++..+.+.||||||++.|..++..++..+|
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGID--FRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCE--EEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeE--EEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 456799999999999999999999887753 334444433 33344445777789999999999999999999999999
Q ss_pred eEEEEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 568 IAVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 568 iVILVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
++|+|+|+++....+. .+++..+.. .++|+++|+||+|+... ..+.........+ ++++++||+
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~ 156 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG---------LPFMETSAK 156 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT---------CCEEECCTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcC---------CeEEEEeCC
Confidence 9999999987433222 223333332 57899999999999642 2233333333332 579999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLVA 656 (732)
Q Consensus 641 tGeGIdeLfe~Ii~la 656 (732)
+|.||++++++|....
T Consensus 157 ~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 157 TGLNVDLAFTAIAKEL 172 (180)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 52
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=1.7e-21 Score=188.48 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=115.7
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccccc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
.....++|+|+|++|+|||||+++|++..+.....+.++.++ ....+.+++..+.+.||||||++.|..++..++..+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF--KIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCE--EEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE--EEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 345678999999999999999999998877655555555443 333444567678899999999999998888889999
Q ss_pred CeEEEEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCC--ChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 567 DIAVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 567 DiVILVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~a--~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
|++|||||+++....+. ..++..+.. .++|+|+|+||+|+... ..+.........+ ++++++||+
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~ 164 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG---------IPFIESSAK 164 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT---------CCEEECBTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcC---------CEEEEEeCC
Confidence 99999999987432222 233333332 37899999999999432 2233333333332 479999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLVA 656 (732)
Q Consensus 641 tGeGIdeLfe~Ii~la 656 (732)
+|.||+++|++|....
T Consensus 165 ~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 165 NDDNVNEIFFTLAKLI 180 (213)
T ss_dssp TTBSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 53
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.86 E-value=1e-21 Score=184.14 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=113.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCC-cceeEEEEeCCCccccchhhcccccccC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDG-KLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idg-k~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
.+.++|+|+|++|+|||||+++|.+..+.....+.++. .++...+.+++ ..+.+.||||||++.|..++..++..+|
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 81 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGL--DFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQ 81 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTS--SEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCS
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeE--EEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCC
Confidence 34579999999999999999999987765444443333 33344444444 4678999999999999999999999999
Q ss_pred eEEEEEEecCCCChhh-HHHHHHHHh-----cCCC-EEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEE
Q 004746 568 IAVIVVAADDGIRPQT-NEAIAHAKA-----AGVP-IVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQI 637 (732)
Q Consensus 568 iVILVVDasdgi~~qt-~EiL~~ak~-----~~vP-IIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeV 637 (732)
++|+|||+++....+. ..++..+.. .+.| +|+|+||+|+.. ...+.........+ ++++++
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~ 152 (178)
T 2hxs_A 82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENG---------FSSHFV 152 (178)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT---------CEEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcC---------CcEEEE
Confidence 9999999987433222 223333322 2567 899999999854 22333333333332 579999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 004746 638 SALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 638 SAKtGeGIdeLfe~Ii~la 656 (732)
||++|.||+++|++|....
T Consensus 153 Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 153 SAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998654
No 54
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.86 E-value=2.3e-21 Score=183.02 Aligned_cols=156 Identities=20% Similarity=0.173 Sum_probs=114.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeE-EEEeecCCc---------ceeEEEEeCCCccccchhh
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAY-KVQVPVDGK---------LQPCVFLDTPGHEAFGAMR 559 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y-~v~i~idgk---------~i~ItLIDTPGhE~f~~~r 559 (732)
+.++|+|+|++|+|||||+++|++..+.....+ |....++ ...+.+++. .+.+.||||||++.|..++
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFIT--TVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCccc--ccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 457999999999999999999998776544333 3333333 233334444 6789999999999999999
Q ss_pred cccccccCeEEEEEEecCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCC
Q 004746 560 ARGARVTDIAVIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGD 631 (732)
Q Consensus 560 ~r~~~~ADiVILVVDasdgi~~qt-~EiL~~ak~----~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ 631 (732)
..++..+|++|+|||+++....+. ..++..+.. .++|+|+|+||+|+.. ...+.........+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------- 158 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYG--------- 158 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC---------
Confidence 999999999999999987433332 233333332 4789999999999954 22333333333332
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 632 IPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 632 ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
++++++||++|.||+++|++|....
T Consensus 159 ~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 159 IPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998754
No 55
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.86 E-value=1.1e-21 Score=180.32 Aligned_cols=154 Identities=21% Similarity=0.249 Sum_probs=112.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+|+|++|+|||||+++|.+..+.....+.++ + .+...+.+++..+.+.||||||++.|..++..++..+|+++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i 79 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-D--FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-E--EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-e--eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 47899999999999999999998776544333222 2 22344455777788999999999999999999999999999
Q ss_pred EEEEecCCCChh-----hHHHHHHHHhcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 571 IVVAADDGIRPQ-----TNEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 571 LVVDasdgi~~q-----t~EiL~~ak~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|||+++....+ ..+++......++|+++|+||+|+... ..+.........+ ++++++||++|
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~ 150 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG---------CPFMETSAKSK 150 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT---------SCEEEECTTCH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhC---------CCEEEecCCCC
Confidence 999998743221 122222223347999999999998532 2233333333332 57999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.|+++++++|....
T Consensus 151 ~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 151 TMVDELFAEIVRQM 164 (167)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998643
No 56
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=180.44 Aligned_cols=154 Identities=21% Similarity=0.178 Sum_probs=103.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcccc-ccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc--cchhhccccccc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAA-EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--FGAMRARGARVT 566 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vs-e~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~--f~~~r~r~~~~A 566 (732)
+.++|+|+|++|+|||||+++|.+..+... ...++ ..+...+.+++..+.+.||||||++. +..++..++..+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 78 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGE----DVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGG 78 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSS----SEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCcccc----ceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccC
Confidence 357999999999999999999998776532 22222 33344455677778899999999988 556666778899
Q ss_pred CeEEEEEEecCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEe
Q 004746 567 DIAVIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (732)
Q Consensus 567 DiVILVVDasdgi~~qt-~EiL~~ak~----~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVS 638 (732)
|++|+|||+++...... .+++..+.. .++|+|+|+||+|+... ..+......... .++++++|
T Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~S 149 (175)
T 2nzj_A 79 SAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVF---------DCKFIETS 149 (175)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHH---------TSEEEECB
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHc---------CCeEEEEe
Confidence 99999999987432222 233333333 37899999999999642 223222222222 25799999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 004746 639 ALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 639 AKtGeGIdeLfe~Ii~la 656 (732)
|++|.||+++|++|....
T Consensus 150 a~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 150 ATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999998754
No 57
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.86 E-value=5.3e-21 Score=179.10 Aligned_cols=157 Identities=22% Similarity=0.245 Sum_probs=113.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|++|+|||||+++|++..+.....+.++. .++...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV--EFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSE--EEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee--eEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 3478999999999999999999988776554444433 33344455677778999999999999999999999999999
Q ss_pred EEEEEecCCCChhh-HHHHHHH---Hh----cCCCEEEEEeCCCCCCC--ChHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 570 VIVVAADDGIRPQT-NEAIAHA---KA----AGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~~a---k~----~~vPIIVViNKiDL~~a--~~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
|+|||+++....+. ..++..+ .. .++|+++|+||+|+... ..+......... ..++++++||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa 155 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDN--------GDYPYFETSA 155 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHT--------TCCCEEECCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhc--------CCceEEEEeC
Confidence 99999987433222 1222222 21 57899999999999632 233333333212 2368999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 004746 640 LKGEKVDDLLETIMLVA 656 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~la 656 (732)
++|.||+++|++|....
T Consensus 156 ~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 156 KDATNVAAAFEEAVRRV 172 (177)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998654
No 58
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.86 E-value=1.5e-21 Score=179.69 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=109.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+|+|++|+|||||+++|.+..+.....+.+.. .+...+.+++..+.+.||||||++.|..++..++..+|++|
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---SYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE---EEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcce---EEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 478999999999999999999987765443332221 12233445777789999999999999999999999999999
Q ss_pred EEEEecCCCChhh-HHHHHHH----HhcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 571 IVVAADDGIRPQT-NEAIAHA----KAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 571 LVVDasdgi~~qt-~EiL~~a----k~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|||+++...... .+++..+ ...++|+++|+||+|+.. ...++........+ ++++++||++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~ 151 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN---------VNYVETSAKTR 151 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHT---------CEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcC---------CeEEEeCCCCC
Confidence 9999987432221 1222222 223789999999999854 23334444443332 57999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.||+++|++|....
T Consensus 152 ~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 152 ANVDKVFFDLMREI 165 (168)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998643
No 59
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=4.8e-21 Score=183.57 Aligned_cols=156 Identities=22% Similarity=0.241 Sum_probs=114.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|++|+|||||+++|++..+.....+.+ .+ .+...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~-~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FD--HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSS-CC--CEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-cc--eeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 34699999999999999999999887654333322 21 2234455677778999999999999999999999999999
Q ss_pred EEEEEecCCCChhhH--HHHHHHHhc--CCCEEEEEeCCCCCCCC---------------hHHHHHHHHHcCCCCCCCCC
Q 004746 570 VIVVAADDGIRPQTN--EAIAHAKAA--GVPIVIAINKIDKDGAN---------------PERVMQELSSIGLMPEDWGG 630 (732)
Q Consensus 570 ILVVDasdgi~~qt~--EiL~~ak~~--~vPIIVViNKiDL~~a~---------------~erv~~eL~elgl~~e~~gg 630 (732)
|||||+++....+.. .++..+... ++|+|+|+||+|+.... .++.......++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------- 165 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG-------- 165 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT--------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC--------
Confidence 999999875332222 234444443 79999999999996421 122222222222
Q ss_pred CCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 631 DIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 631 ~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
..+++++||++|.||+++|++|....
T Consensus 166 ~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 166 ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 13799999999999999999998643
No 60
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.86 E-value=2.5e-21 Score=178.99 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=113.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|++|+|||||+++|++..+.....+.+ ...+....+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTI--GAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS--SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc--ceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35789999999999999999999877654433322 2333334444567778999999999999999988899999999
Q ss_pred EEEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|+|||+++....+. ..++..+.. .++|+++|+||+|+... ..++........ .++++++||++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~g 153 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDN---------SLLFMETSAKTS 153 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEECCTTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHc---------CCeEEEEeCCCC
Confidence 99999987433222 233333332 36889999999998532 223333333332 357999999999
Q ss_pred CCHHHHHHHHHH
Q 004746 643 EKVDDLLETIML 654 (732)
Q Consensus 643 eGIdeLfe~Ii~ 654 (732)
.||++|+++|..
T Consensus 154 ~gi~~l~~~i~~ 165 (170)
T 1r2q_A 154 MNVNEIFMAIAK 165 (170)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999999975
No 61
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.86 E-value=2.5e-21 Score=185.91 Aligned_cols=157 Identities=14% Similarity=0.180 Sum_probs=115.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|.+..+.....+.+... +...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFEN---FSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEE---EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeee---eEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 446799999999999999999999887654444433222 22344467778889999999999999999999999999
Q ss_pred EEEEEEecCCCChhh--HHHHHHHHh--cCCCEEEEEeCCCCCC-----CChHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 569 AVIVVAADDGIRPQT--NEAIAHAKA--AGVPIVIAINKIDKDG-----ANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 569 VILVVDasdgi~~qt--~EiL~~ak~--~~vPIIVViNKiDL~~-----a~~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
+|+|||+++...... ..++..+.. .++|+|+|+||+|+.. ...+........++. ..++++||
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa 169 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC--------VAYIEASS 169 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC--------SCEEECBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC--------CEEEEeec
Confidence 999999997533222 123333332 3689999999999864 223333333444332 23999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 004746 640 LKGEKVDDLLETIMLVA 656 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~la 656 (732)
++|.||+++|++|....
T Consensus 170 ~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 170 VAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998754
No 62
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.86 E-value=2.2e-21 Score=182.70 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=112.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|++|+|||||+++|.+..+...+.+. +.+ .+...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t-~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-VFD--NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCC-SCC--EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCc-ccc--eeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 3478999999999999999999987765443332 222 2233445677788899999999999999998999999999
Q ss_pred EEEEEecCCCChhhH--HHHHHHHhc--CCCEEEEEeCCCCCCCC---------------hHHHHHHHHHcCCCCCCCCC
Q 004746 570 VIVVAADDGIRPQTN--EAIAHAKAA--GVPIVIAINKIDKDGAN---------------PERVMQELSSIGLMPEDWGG 630 (732)
Q Consensus 570 ILVVDasdgi~~qt~--EiL~~ak~~--~vPIIVViNKiDL~~a~---------------~erv~~eL~elgl~~e~~gg 630 (732)
|+|||+++....+.. .++..+... ++|+|+|+||+|+.... .++........+
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------- 152 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-------- 152 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT--------
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC--------
Confidence 999999875433332 233444333 79999999999985421 111111111111
Q ss_pred CCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 631 DIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 631 ~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
..++++|||++|.||+++|++|....
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 153 AVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHH
Confidence 23799999999999999999998654
No 63
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.86 E-value=4.3e-21 Score=179.71 Aligned_cols=159 Identities=27% Similarity=0.293 Sum_probs=103.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecC-CcceeEEEEeCCCccccchhhcccccccC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-GKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~id-gk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
.+.++|+|+|++|+|||||+++|++..+.....+.++.+ ++...+.++ +..+.+.||||||++.|..++..++..+|
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGAD--FLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCS--CEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceE--EEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 345799999999999999999999887765544444333 344444455 55678999999999999999999999999
Q ss_pred eEEEEEEecCCCChhh-HHHHHHHHh-------cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEE
Q 004746 568 IAVIVVAADDGIRPQT-NEAIAHAKA-------AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQ 636 (732)
Q Consensus 568 iVILVVDasdgi~~qt-~EiL~~ak~-------~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVe 636 (732)
++|+|||+++....+. ..++..+.. .++|+++|+||+|+... ........+.... ..+++++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~-------~~~~~~~ 156 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSL-------GDIPLFL 156 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHT-------TSCCEEE
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhc-------CCCeEEE
Confidence 9999999987433222 222222221 57899999999999532 1122233333311 2468999
Q ss_pred EecCCCCCHHHHHHHHHHHH
Q 004746 637 ISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 637 VSAKtGeGIdeLfe~Ii~la 656 (732)
+||++|.||+++|++|....
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 157 TSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EBTTTTBSHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 99999999999999998654
No 64
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.86 E-value=2.5e-21 Score=182.76 Aligned_cols=156 Identities=24% Similarity=0.297 Sum_probs=111.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|++|+|||||+++|++..+..... +++.+ .+...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYD-PTIED--SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 79 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCC-TTCCE--EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CCchh--eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 35789999999999999999999877654433 33332 2334444577778899999999999999999999999999
Q ss_pred EEEEEecCCCChhh-HHHHHHH----HhcCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQT-NEAIAHA----KAAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~~a----k~~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|+|||+++....+. ..++..+ ...++|+|+|+||+|+.... .+.........+ ++++++||++|
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~g 150 (189)
T 4dsu_A 80 LCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG---------IPFIETSAKTR 150 (189)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT---------CCEEECCTTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC---------CeEEEEeCCCC
Confidence 99999987432222 1222222 22478999999999996432 233333333332 57999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 004746 643 EKVDDLLETIMLVAE 657 (732)
Q Consensus 643 eGIdeLfe~Ii~lae 657 (732)
.||+++|++|.....
T Consensus 151 ~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 151 QGVDDAFYTLVREIR 165 (189)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987553
No 65
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.86 E-value=4.7e-21 Score=184.65 Aligned_cols=159 Identities=23% Similarity=0.234 Sum_probs=116.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
...++|+|+|++|+|||||+++|++..+.....+.++.+ ++...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEE--EEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccce--EEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 345799999999999999999999887765555544443 444555567777899999999999999999999999999
Q ss_pred EEEEEEecCCCChhhH-HHHHHHHh-------cCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 569 AVIVVAADDGIRPQTN-EAIAHAKA-------AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 569 VILVVDasdgi~~qt~-EiL~~ak~-------~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
+|+|||+++....... .++..+.. .++|+|+|+||+|+.... .......+.... ..++++++||
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa 156 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK-------NNIPYFETSA 156 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHT-------TSCCEEECBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhc-------CCceEEEEeC
Confidence 9999999874332222 22222211 478999999999996432 122222232211 2468999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 004746 640 LKGEKVDDLLETIMLVA 656 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~la 656 (732)
++|.||+++|++|....
T Consensus 157 ~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 157 KEAINVEQAFQTIARNA 173 (207)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998654
No 66
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.86 E-value=3.3e-21 Score=179.23 Aligned_cols=154 Identities=17% Similarity=0.182 Sum_probs=100.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch-hhcccccccCeEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA-MRARGARVTDIAV 570 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~-~r~r~~~~ADiVI 570 (732)
++|+|+|++|+|||||+++|.+..........++.+ .+...+.+++..+.+.||||||++.|.. ++..++..+|++|
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 80 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSED--TYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------C--EEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCC--eeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence 589999999999999999998766554443433433 4444455678888999999999998876 6666778999999
Q ss_pred EEEEecCCCChh-hHHHHHHHHh----cCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 571 IVVAADDGIRPQ-TNEAIAHAKA----AGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 571 LVVDasdgi~~q-t~EiL~~ak~----~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|||+++....+ ..+++..+.. .++|+|+|+||+|+.. ...+......... .++++++||++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~ 151 (169)
T 3q85_A 81 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL---------SCKHIETSAALH 151 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCEEEECBTTTT
T ss_pred EEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHc---------CCcEEEecCccC
Confidence 999998732221 1223333322 3789999999999853 2233333333332 257999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.|++++|++|....
T Consensus 152 ~~v~~l~~~l~~~i 165 (169)
T 3q85_A 152 HNTRELFEGAVRQI 165 (169)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998754
No 67
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3.4e-21 Score=183.91 Aligned_cols=159 Identities=22% Similarity=0.226 Sum_probs=111.8
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
..+.++|+|+|++|+|||||+++|.+..+. ...+ |.++....+.+ + ++.+.||||||++.|..++..++..+|
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~--~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d 85 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSP--TIGSNVEEIVI--N--NTRFLMWDIGGQESLRSSWNTYYTNTE 85 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEEC--CSCSSCEEEEE--T--TEEEEEEECCC----CGGGHHHHTTCC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcC--CCccceEEEEE--C--CEEEEEEECCCCHhHHHHHHHHhcCCC
Confidence 356789999999999999999999977765 2222 44444444443 3 478999999999999999888999999
Q ss_pred eEEEEEEecCCCChh-hHHHHHHHHh----cCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 568 IAVIVVAADDGIRPQ-TNEAIAHAKA----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 568 iVILVVDasdgi~~q-t~EiL~~ak~----~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
++|+|||+++....+ ..+++..+.. .++|+|+|+||+|+.... .+++.+.+....+. . ..++++++||++
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~--~--~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 86 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK--D--HQWHIQACCALT 161 (187)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCC--S--SCEEEEECBTTT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhc--C--CCcEEEEccCCC
Confidence 999999999864332 2333333322 478999999999997543 33433333221111 1 235899999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 004746 642 GEKVDDLLETIMLVAE 657 (732)
Q Consensus 642 GeGIdeLfe~Ii~lae 657 (732)
|.||++++++|.....
T Consensus 162 g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLK 177 (187)
T ss_dssp TBTHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999987653
No 68
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.86 E-value=3.7e-21 Score=186.38 Aligned_cols=157 Identities=20% Similarity=0.186 Sum_probs=117.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|.+..+.....+.++.++ +...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF--KIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCE--EEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee--EEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 3457999999999999999999998887665555554443 33444456777899999999999999999999999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+|||||+++....+. ..++..+.. .++|+|+|+||+|+... ..+......... .++++++||++
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 154 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADAN---------KMPFLETSALD 154 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT---------TCCEEECCTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc---------CCeEEEEeCCC
Confidence 999999987433222 223333332 46889999999999652 222333322222 25799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|.||+++|++|....
T Consensus 155 g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 155 STNVEDAFLTMARQI 169 (206)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998654
No 69
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.86 E-value=2.5e-21 Score=179.03 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=115.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|++|+|||||+++|.+..+.....+ |....++...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKK--TIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSC--CCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCC--ceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 457999999999999999999998776544444 333344445555677778999999999999998888889999999
Q ss_pred EEEEEecCCCChhh-HHHHHHHHh--cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 570 VIVVAADDGIRPQT-NEAIAHAKA--AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~~ak~--~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
|+|+|+++....+. ..++..+.. .+.|+++|+||+|+... ..+.........+ ++++++||++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~ 152 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK---------LRFYRTSVKEDL 152 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT---------CEEEECBTTTTB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcC---------CeEEEEecCCCC
Confidence 99999987432221 223333322 47999999999998542 2333333333332 579999999999
Q ss_pred CHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLV 655 (732)
Q Consensus 644 GIdeLfe~Ii~l 655 (732)
|+++++++|...
T Consensus 153 ~i~~l~~~l~~~ 164 (168)
T 1z2a_A 153 NVSEVFKYLAEK 164 (168)
T ss_dssp SSHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999864
No 70
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=189.13 Aligned_cols=157 Identities=16% Similarity=0.171 Sum_probs=113.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|....+.....+ |....++...+.+++..+.+.||||||++.|..++..+++.+|+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGS--TIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCC--CcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 4457999999999999999999998876544333 44444444555567777899999999999999999999999999
Q ss_pred EEEEEEecCCCChh-hHHHHHHHHh---cCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCC-CEEEEecC
Q 004746 569 AVIVVAADDGIRPQ-TNEAIAHAKA---AGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDI-PMVQISAL 640 (732)
Q Consensus 569 VILVVDasdgi~~q-t~EiL~~ak~---~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~i-piVeVSAK 640 (732)
+|||||+++....+ ...++..+.. .++|+|+|+||+|+.. ...++..+.....+ + ++++|||+
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~---------~~~~~~~SA~ 175 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYD---------ILCAIETSAK 175 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT---------CSEEEECBTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcC---------CCEEEEEeCC
Confidence 99999998743222 2233333332 4689999999999954 23344444444332 3 79999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLVA 656 (732)
Q Consensus 641 tGeGIdeLfe~Ii~la 656 (732)
+|.||+++|++|....
T Consensus 176 ~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 176 DSSNVEEAFLRVATEL 191 (201)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 71
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.86 E-value=4.6e-21 Score=179.05 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=115.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|++|+|||||+++|++..+.....+.++.+ ++...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGID--FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEE--EEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeE--EEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 34799999999999999999999887766555555544 3344444577778999999999999999988889999999
Q ss_pred EEEEEecCCCChh-hHHHHHHH---HhcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQ-TNEAIAHA---KAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~q-t~EiL~~a---k~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|+|||+++..... ...++..+ ...++|+++|+||+|+... ..+......... .++++++||++|
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~ 161 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL---------NVMFIETSAKAG 161 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH---------TCEEEEEBTTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc---------CCeEEEEeCCCC
Confidence 9999998642221 12233322 2347899999999998532 233333333333 257999999999
Q ss_pred CCHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLV 655 (732)
Q Consensus 643 eGIdeLfe~Ii~l 655 (732)
.|+++++++|...
T Consensus 162 ~~i~~l~~~l~~~ 174 (179)
T 2y8e_A 162 YNVKQLFRRVAAA 174 (179)
T ss_dssp BSHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999753
No 72
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.86 E-value=2.6e-21 Score=181.99 Aligned_cols=156 Identities=19% Similarity=0.205 Sum_probs=114.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|++|+|||||+++|+...+.....+ ++.. .+...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEP-TKAD--SYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCT-TCCE--EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCC-ccce--EEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 457999999999999999999998776544333 2222 1233344567778899999999999999999999999999
Q ss_pred EEEEEecCCCChhh-HHHHH----HHHhcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 570 VIVVAADDGIRPQT-NEAIA----HAKAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~----~ak~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
|+|||+++....+. ..++. +....++|+|+|+||+|+.. ...++........ .++++++||++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 164 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW---------NVNYVETSAKT 164 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEECCTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc---------CCeEEEeCCCC
Confidence 99999987432211 12222 22223789999999999854 2333444444333 25799999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 004746 642 GEKVDDLLETIMLVAE 657 (732)
Q Consensus 642 GeGIdeLfe~Ii~lae 657 (732)
|.||+++|++|.....
T Consensus 165 ~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 165 RANVDKVFFDLMREIR 180 (187)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987653
No 73
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.86 E-value=2.8e-21 Score=179.24 Aligned_cols=152 Identities=20% Similarity=0.178 Sum_probs=93.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
.++|+|+|++|+|||||+++|.+.... .....++|.. ..+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 76 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAY 76 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE-----EEEEETTEEEEEEEEECC---------------CCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE-----EEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEE
Confidence 478999999999999999999876543 2233333332 3344677888999999999999999999999999999
Q ss_pred EEEEEecCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 570 VIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~~ak~----~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
|+|||+++...... ..++..+.. .++|+++|+||+|+... ..+......... .++++++||++
T Consensus 77 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 147 (166)
T 3q72_A 77 VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF---------DCKFIETSAAL 147 (166)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHT---------TCEEEECBGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHh---------CCcEEEeccCC
Confidence 99999997432222 223333322 47899999999999642 222222222222 25899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|.||+++|++|....
T Consensus 148 ~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 148 HHNVQALFEGVVRQI 162 (166)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998754
No 74
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.86 E-value=5.6e-21 Score=182.73 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=115.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
..++|+|+|++|+|||||+++|++..+.....+.++ ..+....+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG--IDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCC--CEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcee--EEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 357999999999999999999998876544444333 233334444567778999999999999999999999999999
Q ss_pred EEEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|+|||+++....+. .+++..+.. .++|+|+|+||+|+... ..+.........+ ++++++||++|
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~g 169 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG---------FEFFEASAKEN 169 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------CEEEECBTTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC---------CeEEEEECCCC
Confidence 99999987432222 234444443 37899999999998542 2233333333332 57999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.||+++|++|....
T Consensus 170 ~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 170 INVKQVFERLVDVI 183 (189)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
No 75
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.86 E-value=3.5e-21 Score=185.76 Aligned_cols=156 Identities=18% Similarity=0.166 Sum_probs=115.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
..++|+|+|++|+|||||+++|++..+.....+.+ +..+....+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV--GIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCC--SEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc--ceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 35799999999999999999999887654443333 3333344445577778999999999999999999999999999
Q ss_pred EEEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|||||+++...... ..++..+.. .++|+|+|+||+|+... ..+.........+ ++++++||++|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~ 155 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG---------FEFFEASAKDN 155 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT---------CEEEECBTTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC---------CeEEEEECCCC
Confidence 99999987433222 233333333 47899999999999652 2233333333332 57999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.||+++|++|....
T Consensus 156 ~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 156 INVKQTFERLVDVI 169 (203)
T ss_dssp BSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
No 76
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=2.5e-21 Score=190.10 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=116.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|+...+.....+.++ ..++...+.+++..+.+.||||||++.|..++..+++.+|+
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG--VDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCS--EEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccc--eeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 3457999999999999999999998877655444433 34444455567777899999999999999999999999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHH---hcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAK---AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak---~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+|+|||+++....+. ..++..+. ..++|+|+|+||+|+... ..+......... .+++++|||++
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~ 172 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ---------DMYYLETSAKE 172 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH---------TCCEEECCTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc---------CCEEEEEeCCC
Confidence 999999987433221 22333332 346889999999998532 233333322222 25799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|.||+++|++|....
T Consensus 173 g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 173 SDNVEKLFLDLACRL 187 (201)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998654
No 77
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.86 E-value=4e-21 Score=186.53 Aligned_cols=159 Identities=22% Similarity=0.246 Sum_probs=114.9
Q ss_pred cccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccc
Q 004746 486 KLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARV 565 (732)
Q Consensus 486 ~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ 565 (732)
.+....++|+|+|++|+|||||+++|.+..+...+.+.++..+ ...+.+++..+.+.||||||++.|..++..++..
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 96 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY---IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPD 96 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCC---EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceE---EEEEEECCEEEEEEEEECCCchhHHHHHHHhcCC
Confidence 3555678999999999999999999998877655555444332 1234456777899999999999999999999999
Q ss_pred cCeEEEEEEecCCCChhh--HHHHHHHHhc--CCCEEEEEeCCCCCCCCh---------------HHHHHHHHHcCCCCC
Q 004746 566 TDIAVIVVAADDGIRPQT--NEAIAHAKAA--GVPIVIAINKIDKDGANP---------------ERVMQELSSIGLMPE 626 (732)
Q Consensus 566 ADiVILVVDasdgi~~qt--~EiL~~ak~~--~vPIIVViNKiDL~~a~~---------------erv~~eL~elgl~~e 626 (732)
+|++|+|||+++....+. ..++..+... ++|+++|+||+|+..... ++........+
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 172 (201)
T 2gco_A 97 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRIS---- 172 (201)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTT----
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCC----
Confidence 999999999987432222 2233334333 799999999999965311 11111112221
Q ss_pred CCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 627 DWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 627 ~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
..+++++||++|.||++||++|...
T Consensus 173 ----~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 173 ----AFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp ----CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ----CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 2379999999999999999999864
No 78
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.86 E-value=3.8e-21 Score=178.16 Aligned_cols=155 Identities=20% Similarity=0.208 Sum_probs=113.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|++|+|||||+++|.+..+.....+.+ ...+....+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI--GASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCC--SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCce--eEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 34799999999999999999999887654333322 2223334444567778999999999999999988899999999
Q ss_pred EEEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|+|||+++....+. ..++..+.. .++|+++|+||+|+... ..+......... .++++++||++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~~ 153 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI---------HAIFVETSAKNA 153 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCEEEECBTTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHc---------CCEEEEEeCCCC
Confidence 99999987543322 233344433 36789999999999542 222222222222 257999999999
Q ss_pred CCHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLV 655 (732)
Q Consensus 643 eGIdeLfe~Ii~l 655 (732)
.|+++|+++|...
T Consensus 154 ~~i~~l~~~i~~~ 166 (170)
T 1z0j_A 154 ININELFIEISRR 166 (170)
T ss_dssp BSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 9999999999764
No 79
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=3.2e-21 Score=178.25 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=111.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+|+|++|+|||||+++|++..+.....+.++.+ +....+.+++..+.+.||||||++.|..++..++..+|++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA--FLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE--EEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 3689999999999999999999887665444433333 23334445677789999999999999999889999999999
Q ss_pred EEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCC------ChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 571 IVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA------NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 571 LVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~a------~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
+|+|+++...... ..++..+.. .++|+++|+||+|+... ..+......... .++++++||+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~ 151 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK---------GLLFFETSAK 151 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH---------TCEEEECCTT
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc---------CCEEEEEeCC
Confidence 9999987433222 223333322 37889999999998532 112222222222 2579999999
Q ss_pred CCCCHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIML 654 (732)
Q Consensus 641 tGeGIdeLfe~Ii~ 654 (732)
+|.|++++|++|..
T Consensus 152 ~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 152 TGENVNDVFLGIGE 165 (170)
T ss_dssp TCTTHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999999874
No 80
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=6.3e-21 Score=181.30 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=116.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|++|+|||||+++|++..+.....+.++.+ ++...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVD--FKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEE--EEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceE--EEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 35799999999999999999999887765444433333 3334444577788999999999999999999999999999
Q ss_pred EEEEEecCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCC--ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~~ak~----~~vPIIVViNKiDL~~a--~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|||||+++...... ..++..+.. .++|+++|+||+|+... ..+......... .++++++||++|
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~ 162 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKH---------SMLFIEASAKTC 162 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHT---------TCEEEECCTTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHc---------CCEEEEecCCCC
Confidence 99999987433222 233344433 36889999999999543 233333333332 257999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.||+++|++|....
T Consensus 163 ~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 163 DGVQCAFEELVEKI 176 (195)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998754
No 81
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.86 E-value=2.2e-21 Score=185.73 Aligned_cols=158 Identities=18% Similarity=0.158 Sum_probs=116.5
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
..+.++|+|+|++|+|||||+++|++..+.....+ |.+..+....+.+++..+.+.||||||++.|..++..++..+|
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRT--TIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCC--CSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 34557999999999999999999998877644433 3333334444455677889999999999999999999999999
Q ss_pred eEEEEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 568 IAVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 568 iVILVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
++|||||+++...... ..++..+.. .++|+|+|+||+|+... ..+......... .++++++||+
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~ 170 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN---------GLLFLETSAL 170 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEEECTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHc---------CCEEEEEeCC
Confidence 9999999987433222 233333332 36889999999998542 223333333332 2579999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLVA 656 (732)
Q Consensus 641 tGeGIdeLfe~Ii~la 656 (732)
+|.||+++|++|....
T Consensus 171 ~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 171 DSTNVELAFETVLKEI 186 (193)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998653
No 82
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.85 E-value=3.4e-21 Score=187.41 Aligned_cols=156 Identities=20% Similarity=0.245 Sum_probs=113.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|++|+|||||+++|....+...+.+.+ .+ .+...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~-~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FD--NFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSS-CC--CEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcc-ce--eEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 45799999999999999999999877654433322 21 2334455677778999999999999999999999999999
Q ss_pred EEEEEecCCCChhhH--HHHHHHHhc--CCCEEEEEeCCCCCCC-----------ChHHHHHHHHHcCCCCCCCCCCCCE
Q 004746 570 VIVVAADDGIRPQTN--EAIAHAKAA--GVPIVIAINKIDKDGA-----------NPERVMQELSSIGLMPEDWGGDIPM 634 (732)
Q Consensus 570 ILVVDasdgi~~qt~--EiL~~ak~~--~vPIIVViNKiDL~~a-----------~~erv~~eL~elgl~~e~~gg~ipi 634 (732)
|||||+++....+.. .++..+... ++|+|+|+||+|+... ..++.......++ ..++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~~~~ 156 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG--------AAAY 156 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT--------CSEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC--------CceE
Confidence 999999874332222 233444333 7999999999998543 1222222233332 1479
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q 004746 635 VQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~la 656 (732)
+++||++|.||+++|++|....
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEccCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 83
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.85 E-value=1.5e-22 Score=226.33 Aligned_cols=220 Identities=21% Similarity=0.236 Sum_probs=151.1
Q ss_pred chHHHHHHHhcCCHHHHHHHHHhCCCcccccccCCHHHHHHhhhhcCCeeeecCchhhHHHhhhccccChhhhhcccCCC
Q 004746 412 MLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLEDRP 491 (732)
Q Consensus 412 iav~qLag~Ls~~i~eiik~L~~lG~~~~in~~Ld~e~ie~ia~e~~~~~i~~~~~~ieell~~~~~~~e~~~~~l~~r~ 491 (732)
+++++|.|.|+..+..+++.|+.+...++...++++| ++.+..+ ....+......++.+ +.....+...+.+
T Consensus 172 ~a~~~l~g~l~~~~~~~r~~l~~~~~~ie~~idf~ee-i~~~~~~-i~~~~~~l~~eL~~l------~~~~~~~~~~r~~ 243 (482)
T 1xzp_A 172 LSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDE-IETNTGE-VVTRLERIKEKLTEE------LKKADAGILLNRG 243 (482)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHSTTT-CCCCHHH-HHHHHHHHHHHHHHH------HHHHHHHHHHHHC
T ss_pred HHHHhcchhHhHHHHHHHHHHHHHHHHhhhcCCCCcc-ccchHHH-HHHHHHHHHHHHHHH------HHhhhhhhhccCC
Confidence 7899999999999999999988874333333333332 1110000 000000001111111 2233344555677
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcc-ccch--------hhcc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE-AFGA--------MRAR 561 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE-~f~~--------~r~r 561 (732)
++|+|+|.+|+|||||+|+|++..+ .+++.+++|+++....+.+ + +..+.||||||+. .+.. ....
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~--~--g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI--R--GILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE--T--TEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec--C--CeEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 8999999999999999999998764 4788899999876665554 3 4679999999987 5532 1235
Q ss_pred cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC-ChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 562 ~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a-~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
++..+|++|+|||+++....+..+++..+ .++|+|+|+||+|+... +.+++.. +. + ..+++++|||+
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~~~~~~-~~--~-------~~~~~i~iSAk 387 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEEEIKN-KL--G-------TDRHMVKISAL 387 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHHHHH-HH--T-------CSTTEEEEEGG
T ss_pred HhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCHHHHHH-Hh--c-------CCCcEEEEECC
Confidence 67899999999999988777777776655 37899999999999653 2222222 11 1 13579999999
Q ss_pred CCCCHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLV 655 (732)
Q Consensus 641 tGeGIdeLfe~Ii~l 655 (732)
+|+||++|+++|...
T Consensus 388 tg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 388 KGEGLEKLEESIYRE 402 (482)
T ss_dssp GTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999875
No 84
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.85 E-value=6.1e-21 Score=183.81 Aligned_cols=159 Identities=18% Similarity=0.222 Sum_probs=108.9
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccccc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
...+.++|+|+|++|+|||||+++|++..+.....+ ++.+ .+...+.+++..+.+.||||||++.|..++..++..+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIP-TAFD--NFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------C-CSSE--EEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-cccc--eeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 445678999999999999999999998775543333 3322 2334445577778899999999999999999999999
Q ss_pred CeEEEEEEecCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCC---------------ChHHHHHHHHHcCCCCCC
Q 004746 567 DIAVIVVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGA---------------NPERVMQELSSIGLMPED 627 (732)
Q Consensus 567 DiVILVVDasdgi~~qt~--EiL~~ak~--~~vPIIVViNKiDL~~a---------------~~erv~~eL~elgl~~e~ 627 (732)
|++|||||+++....... .++..+.. .++|+|+|+||+|+... ..+........++
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----- 167 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK----- 167 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC-----
Confidence 999999999874333322 23333333 37999999999998542 1122222222222
Q ss_pred CCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 628 WGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 628 ~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
..++++|||++|.||+++|++|....
T Consensus 168 ---~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 168 ---AASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp ---CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---CcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 13799999999999999999998754
No 85
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=4.2e-21 Score=185.75 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=108.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|++..+.....+ |.+..++...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISA--TLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCC--CccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 4568999999999999999999998776533333 33333344445567777899999999999999999899999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHH---hcCCCEEEEEeCCCCCC---------CChHHHHHHHHHcCCCCCCCCCCCCEE
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAK---AAGVPIVIAINKIDKDG---------ANPERVMQELSSIGLMPEDWGGDIPMV 635 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak---~~~vPIIVViNKiDL~~---------a~~erv~~eL~elgl~~e~~gg~ipiV 635 (732)
+|||||+++....+. ..++..+. ..++|+|+|+||+|+.. ...+......... .++++
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~~ 174 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY---------GALFC 174 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH---------TCEEE
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc---------CCeEE
Confidence 999999987543332 22333333 24789999999999841 1122222222222 25799
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 004746 636 QISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 636 eVSAKtGeGIdeLfe~Ii~la 656 (732)
++||++|.||+++|++|....
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998643
No 86
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.85 E-value=4.9e-21 Score=183.76 Aligned_cols=157 Identities=18% Similarity=0.129 Sum_probs=114.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|++..+.....+.++.+ +....+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE--FGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSS--EEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 345799999999999999999999887765444433333 333444457777899999999999999988889999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+|||||+++....+. ..++..+.. .++|+|+|+||+|+.. ...+......... .++++++||++
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~ 167 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH---------GLIFMETSAKT 167 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH---------TCEEEEECTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHc---------CCEEEEEeCCC
Confidence 999999987433222 233333332 3789999999999953 2233333333333 25799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|.||+++|++|....
T Consensus 168 ~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 168 ACNVEEAFINTAKEI 182 (191)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998654
No 87
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.85 E-value=2.7e-21 Score=178.02 Aligned_cols=150 Identities=19% Similarity=0.284 Sum_probs=106.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcccc-------chhhcccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF-------GAMRARGA 563 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f-------~~~r~r~~ 563 (732)
++|+++|++|+|||||+++|.+..+. ....+++|.+.....+. +++ ..+.||||||++.+ ...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVE--TDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEE--ETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEE--eCC--ceEEEEECCCCCCccchHHHHHHHHHHHH
Confidence 58999999999999999999987754 45556667665444433 333 47999999998873 34445667
Q ss_pred cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 564 RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 564 ~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
..+|++|+|+|+++........+...+...++|+++|+||+|+.... .....+..++ ..+++++||++|.
T Consensus 78 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~--------~~~~~~~Sa~~~~ 147 (161)
T 2dyk_A 78 EDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE--LYLGPLYGLG--------FGDPIPTSSEHAR 147 (161)
T ss_dssp TTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG--GGCGGGGGGS--------SCSCEECBTTTTB
T ss_pred HhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch--HhHHHHHhCC--------CCCeEEEecccCC
Confidence 89999999999999877766666677776789999999999985431 1111111111 1279999999999
Q ss_pred CHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLV 655 (732)
Q Consensus 644 GIdeLfe~Ii~l 655 (732)
|++++|++|...
T Consensus 148 gv~~l~~~l~~~ 159 (161)
T 2dyk_A 148 GLEELLEAIWER 159 (161)
T ss_dssp SHHHHHHHHHHH
T ss_pred ChHHHHHHHHHh
Confidence 999999999754
No 88
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=3.7e-21 Score=185.15 Aligned_cols=156 Identities=21% Similarity=0.224 Sum_probs=115.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|.+|+|||||+++|++..+.....+ |.+..+....+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISP--TIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCC--CSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCC--CcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 3457999999999999999999998776433222 22233334445566778899999999999999999999999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+|+|||+++....+. ..++..+.. .++|+++|+||+|+.. ...++..+..... .++++++||++
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~ 169 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESI---------GAIVVETSAKN 169 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTT---------TCEEEECBTTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEeCCC
Confidence 999999987543222 233333333 3789999999999853 1233333333322 25799999999
Q ss_pred CCCHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLV 655 (732)
Q Consensus 642 GeGIdeLfe~Ii~l 655 (732)
|.||++|+++|...
T Consensus 170 ~~gi~~l~~~l~~~ 183 (192)
T 2fg5_A 170 AINIEELFQGISRQ 183 (192)
T ss_dssp TBSHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999999864
No 89
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.85 E-value=4.1e-21 Score=189.46 Aligned_cols=159 Identities=14% Similarity=0.142 Sum_probs=115.7
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
....++|+|+|.+|+|||||+++|+...+...+.+.+... +...+.+++..+.+.||||||++.|..++..++..+|
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN---YTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEE---EEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeee---EEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3456899999999999999999999887765444433322 2344556777889999999999999999999999999
Q ss_pred eEEEEEEecCCCChhh--HHHHHHHHhc--CCCEEEEEeCCCCCC---------------CChHHHHHHHHHcCCCCCCC
Q 004746 568 IAVIVVAADDGIRPQT--NEAIAHAKAA--GVPIVIAINKIDKDG---------------ANPERVMQELSSIGLMPEDW 628 (732)
Q Consensus 568 iVILVVDasdgi~~qt--~EiL~~ak~~--~vPIIVViNKiDL~~---------------a~~erv~~eL~elgl~~e~~ 628 (732)
++|||||+++...... ..++..+... ++|+|+|+||+|+.. ...+........+++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----- 175 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA----- 175 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC-----
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC-----
Confidence 9999999998543332 2333444333 789999999999853 223333333333321
Q ss_pred CCCCCEEEEecCCCCC-HHHHHHHHHHHHh
Q 004746 629 GGDIPMVQISALKGEK-VDDLLETIMLVAE 657 (732)
Q Consensus 629 gg~ipiVeVSAKtGeG-IdeLfe~Ii~lae 657 (732)
.+|++|||++|.| |+++|++|.....
T Consensus 176 ---~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 176 ---EIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp ---SEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred ---CEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 2799999999998 9999999987653
No 90
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.85 E-value=1.9e-21 Score=183.01 Aligned_cols=156 Identities=21% Similarity=0.231 Sum_probs=102.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|....+.....+ ++.+ .+...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVP-TVFD--NFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC-------------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-eeee--eEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 4568999999999999999999998776543333 2211 112223345666778899999999999999999999999
Q ss_pred EEEEEEecCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCCC-------------hHHHHHHHHHcCCCCCCCCCC
Q 004746 569 AVIVVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGAN-------------PERVMQELSSIGLMPEDWGGD 631 (732)
Q Consensus 569 VILVVDasdgi~~qt~--EiL~~ak~--~~vPIIVViNKiDL~~a~-------------~erv~~eL~elgl~~e~~gg~ 631 (732)
+|+|||+++....+.. .++..+.. .++|+|+|+||+|+.... .++.......++ .
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~ 154 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG--------A 154 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT--------C
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC--------C
Confidence 9999999874333222 23333333 278999999999985432 112222222222 1
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHH
Q 004746 632 IPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 632 ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
.++++|||++|.||+++|++|...
T Consensus 155 ~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 155 PAYIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 379999999999999999999864
No 91
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.85 E-value=5.3e-21 Score=183.75 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=115.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|++..+.....+ ++.+ .+...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEP-TKAD--SYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCT-TCCE--EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ccce--EEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 3457999999999999999999998776544333 2222 223344457777899999999999999999999999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHH----hcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak----~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
+|+|||+++...... ..++..+. ..++|+|+|+||+|+.. ...++........+ ++++++||+
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~ 159 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN---------VNYVETSAK 159 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------CEEEEECTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhC---------CeEEEEeCC
Confidence 999999987432211 12222222 23789999999999954 23344444444332 579999999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 004746 641 KGEKVDDLLETIMLVAEL 658 (732)
Q Consensus 641 tGeGIdeLfe~Ii~lael 658 (732)
+|.||+++|++|......
T Consensus 160 ~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 160 TRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999876543
No 92
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.85 E-value=4.6e-21 Score=187.13 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=112.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|+...+...+.+ ++.+ .+...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-TVFD--NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCC-CSEE--EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCC-eecc--eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 4568999999999999999999998776544433 3322 344455567788889999999999999999999999999
Q ss_pred EEEEEEecCCCChhhH--HHHHHHHhc--CCCEEEEEeCCCCCCCCh---------------HHHHHHHHHcCCCCCCCC
Q 004746 569 AVIVVAADDGIRPQTN--EAIAHAKAA--GVPIVIAINKIDKDGANP---------------ERVMQELSSIGLMPEDWG 629 (732)
Q Consensus 569 VILVVDasdgi~~qt~--EiL~~ak~~--~vPIIVViNKiDL~~a~~---------------erv~~eL~elgl~~e~~g 629 (732)
+|+|||+++....+.. .++..+... ++|+|+|+||+|+..... +.........
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------- 176 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-------- 176 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT--------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhc--------
Confidence 9999999975443332 234444443 799999999999854321 1111112222
Q ss_pred CCCCEEEEecCCCCCHHHHHHHHHH
Q 004746 630 GDIPMVQISALKGEKVDDLLETIML 654 (732)
Q Consensus 630 g~ipiVeVSAKtGeGIdeLfe~Ii~ 654 (732)
+..++++|||++|.||+++|++|..
T Consensus 177 ~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 177 GAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 1246999999999999999999975
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.85 E-value=5.3e-21 Score=182.02 Aligned_cols=157 Identities=21% Similarity=0.208 Sum_probs=110.5
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccccc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
...+.++|+|+|++|+|||||+++|.+..+. .. ..|.++....+.+ + ++.+.||||||++.|..++..++..+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~--~--~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVV-HT--SPTIGSNVEEIVI--N--NTRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCE-EE--ECCSSSSCEEEEE--T--TEEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCC-cc--CCcCceeeEEEEE--C--CEEEEEEECCCCHhHHHHHHHHhccC
Confidence 3455689999999999999999999987762 11 1233333333433 3 47899999999999999999999999
Q ss_pred CeEEEEEEecCCCChhh-HHHHHHHH----hcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 567 DIAVIVVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 567 DiVILVVDasdgi~~qt-~EiL~~ak----~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
|++|+|||+++....+. .+++..+. ..++|+|+|+||+|+.... .+++.+.+....+. . ..++++++||+
T Consensus 90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~--~--~~~~~~~~Sa~ 165 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK--D--HQWHIQACCAL 165 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC--S--SCEEEEECBTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCccccc--C--CceEEEEccCC
Confidence 99999999998643332 23333332 2578999999999996542 33333332211111 1 23589999999
Q ss_pred CCCCHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIML 654 (732)
Q Consensus 641 tGeGIdeLfe~Ii~ 654 (732)
+|.||+++|++|..
T Consensus 166 ~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 166 TGEGLCQGLEWMMS 179 (181)
T ss_dssp TTBTHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHh
Confidence 99999999999864
No 94
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.85 E-value=7e-21 Score=176.17 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=108.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEE
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVIL 571 (732)
++|+|+|++|+|||||+++|+...+.. ..+ |.++....+. ...+.+.||||||++.|..++..++..+|++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 73 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCC--CSSCCEEEEE----CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccC--cCceeEEEEE----ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEE
Confidence 479999999999999999999766542 222 4443333332 345789999999999999888889999999999
Q ss_pred EEEecCCCChh-hHHHHHHHHh----cCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCH
Q 004746 572 VVAADDGIRPQ-TNEAIAHAKA----AGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (732)
Q Consensus 572 VVDasdgi~~q-t~EiL~~ak~----~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGI 645 (732)
|||+++..... ..+++..+.. .++|+++|+||+|+..... .++...+...... . ..++++++||++|.||
T Consensus 74 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~Sa~~~~gi 149 (164)
T 1r8s_A 74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR--H--RNWYIQATCATSGDGL 149 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCS--S--CCEEEEECBTTTTBTH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCccccc--C--ccEEEEEcccCCCcCH
Confidence 99998753222 2233333322 3789999999999965432 3333322111111 1 2357999999999999
Q ss_pred HHHHHHHHHH
Q 004746 646 DDLLETIMLV 655 (732)
Q Consensus 646 deLfe~Ii~l 655 (732)
+++|++|...
T Consensus 150 ~~l~~~l~~~ 159 (164)
T 1r8s_A 150 YEGLDWLSNQ 159 (164)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 95
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.85 E-value=3.2e-21 Score=184.43 Aligned_cols=156 Identities=20% Similarity=0.221 Sum_probs=112.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccc-hhhcccccccC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG-AMRARGARVTD 567 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~-~~r~r~~~~AD 567 (732)
.+.++|+|+|++|+|||||+++|+...+.....+.++. .++...+.+++..+.+.||||||++.|. .++..+++.+|
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV--DFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC--CEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce--EEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 45689999999999999999999988776554444433 3344444557777899999999999998 77788889999
Q ss_pred eEEEEEEecCCCChhh-HHHHHHH----HhcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 568 IAVIVVAADDGIRPQT-NEAIAHA----KAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 568 iVILVVDasdgi~~qt-~EiL~~a----k~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
++|||||+++...... ..++..+ ...++|+|+|+||+|+... ..+......... .++++++||
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa 166 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH---------SMPLFETSA 166 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCCEEECCS
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHc---------CCEEEEEeC
Confidence 9999999987322211 1222222 2357899999999999542 222222222222 257999999
Q ss_pred CCC---CCHHHHHHHHHHH
Q 004746 640 LKG---EKVDDLLETIMLV 655 (732)
Q Consensus 640 KtG---eGIdeLfe~Ii~l 655 (732)
++| .||+++|++|...
T Consensus 167 ~~~~~~~~i~~l~~~l~~~ 185 (189)
T 1z06_A 167 KNPNDNDHVEAIFMTLAHK 185 (189)
T ss_dssp SSGGGGSCHHHHHHHHC--
T ss_pred CcCCcccCHHHHHHHHHHH
Confidence 999 9999999998753
No 96
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.85 E-value=9.6e-21 Score=179.91 Aligned_cols=157 Identities=20% Similarity=0.192 Sum_probs=111.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|.+.. .....+ |.+.....+. + ..+.+.||||||++.|...+..++..+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~--t~~~~~~~~~--~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 88 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISP--TLGFNIKTLE--H--RGFKLNIWDVGGQKSLRSYWRNYFESTDG 88 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCC--CSSEEEEEEE--E--TTEEEEEEEECCSHHHHTTGGGGCTTCSE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccc--cCccceEEEE--E--CCEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence 467899999999999999999999776 322222 4343333333 2 35789999999999999999999999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHH----hcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak----~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|+|+|+++....+. .+++..+. ..++|+|+|+||+|+.... .+++.+.+...... ...++++++||++|
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~ 164 (186)
T 1ksh_A 89 LIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIR----SHHWRIQGCSAVTG 164 (186)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC----SSCEEEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhcc----CCceEEEEeeCCCC
Confidence 999999987543222 23333332 2478999999999996543 33333322111010 12468999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.||++++++|....
T Consensus 165 ~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 165 EDLLPGIDWLLDDI 178 (186)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998754
No 97
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.85 E-value=5.9e-21 Score=183.13 Aligned_cols=159 Identities=21% Similarity=0.247 Sum_probs=113.5
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccccc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
..++.++|+|+|++|+|||||+++|++..+.....+ |.+..+..+ ....+.+.||||||++.|..++..++..+
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKI----TKGNVTIKLWDIGGQPRFRSMWERYCRGV 91 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEE----EETTEEEEEEEECCSHHHHTTHHHHHTTC
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCC--CCceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHccC
Confidence 345568999999999999999999998777643333 434333332 23467899999999999999998999999
Q ss_pred CeEEEEEEecCCCChh-hHHHHHHHH----hcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 567 DIAVIVVAADDGIRPQ-TNEAIAHAK----AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 567 DiVILVVDasdgi~~q-t~EiL~~ak----~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
|++|||||+++....+ ..+++..+. ..++|+|+|+||+|+.... ..++...+... ... ...+++++|||+
T Consensus 92 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~SA~ 167 (188)
T 1zd9_A 92 SAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLS-AIQ---DREICCYSISCK 167 (188)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGG-GCC---SSCEEEEECCTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChh-hhc---cCCeeEEEEECC
Confidence 9999999998743322 223333332 2578999999999997642 33333322211 111 124679999999
Q ss_pred CCCCHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLV 655 (732)
Q Consensus 641 tGeGIdeLfe~Ii~l 655 (732)
+|.||++||++|...
T Consensus 168 ~g~gv~~l~~~l~~~ 182 (188)
T 1zd9_A 168 EKDNIDITLQWLIQH 182 (188)
T ss_dssp TCTTHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999864
No 98
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.85 E-value=3.9e-21 Score=185.29 Aligned_cols=159 Identities=16% Similarity=0.184 Sum_probs=111.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
...++|+|+|++|+|||||+++|++..+.....+.++.+. +...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDF--KIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEE--EEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeE--EEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 3457899999999999999999998777655445444443 33444456777899999999999999999999999999
Q ss_pred EEEEEEecCCCChhhH-HHHHHHH---hcCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~~qt~-EiL~~ak---~~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|||||+++....+.. .++..+. ..++|+|+|+||+|+.... .......+... + ..++++++||++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~-~------~~~~~~~~SA~~g 174 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQ-I------TGMRFCEASAKDN 174 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-S------TTCEEEECBTTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHh-c------CCCeEEEEeCCCC
Confidence 9999999975433332 2223332 3478999999999985421 12222333321 0 1368999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.||+++|++|....
T Consensus 175 ~gi~~l~~~l~~~i 188 (192)
T 2il1_A 175 FNVDEIFLKLVDDI 188 (192)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998643
No 99
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.85 E-value=5.7e-21 Score=185.99 Aligned_cols=161 Identities=22% Similarity=0.227 Sum_probs=106.6
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccccc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
+..+..+|+|+|++|||||||+++|.+..+.. . ..|.+.....+. +++ +.+.||||||++.|..++..+++.+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~--~~t~~~~~~~~~--~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-H--VPTLHPTSEELT--IAG--MTFTTFDLGGHIQARRVWKNYLPAI 93 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEE--ETT--EEEEEEEECC----CCGGGGGGGGC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCc-c--CCCCCceeEEEE--ECC--EEEEEEECCCcHhhHHHHHHHHhcC
Confidence 34566799999999999999999999776542 1 124333333333 333 7899999999999999999999999
Q ss_pred CeEEEEEEecCCCChh-hHHHHHHHH----hcCCCEEEEEeCCCCCCC-ChHHHHHHHHHcCCC--------CCCCCCCC
Q 004746 567 DIAVIVVAADDGIRPQ-TNEAIAHAK----AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLM--------PEDWGGDI 632 (732)
Q Consensus 567 DiVILVVDasdgi~~q-t~EiL~~ak----~~~vPIIVViNKiDL~~a-~~erv~~eL~elgl~--------~e~~gg~i 632 (732)
|++|+|+|+++....+ ...++..+. ..++|+|+|+||+|+... ..++..+.+...... .......+
T Consensus 94 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (198)
T 1f6b_A 94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL 173 (198)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceE
Confidence 9999999998753222 223333332 247899999999999753 334444333322100 00011346
Q ss_pred CEEEEecCCCCCHHHHHHHHHH
Q 004746 633 PMVQISALKGEKVDDLLETIML 654 (732)
Q Consensus 633 piVeVSAKtGeGIdeLfe~Ii~ 654 (732)
++++|||++|+||+++|++|..
T Consensus 174 ~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 174 EVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp EEEECBTTTTBSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999999874
No 100
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.85 E-value=5.1e-21 Score=185.95 Aligned_cols=157 Identities=20% Similarity=0.190 Sum_probs=109.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|++..+.....+.++.+ ++...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 100 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVE--FGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 100 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CC--EEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccce--eEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence 456899999999999999999999887765554444433 344444556777899999999999999888888999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHH---hcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAK---AAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak---~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+|||||+++....+. ..++..+. ..++|+|+|+||+|+.. ....+........ .+++++|||++
T Consensus 101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~SA~~ 171 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQEN---------ELMFLETSALT 171 (200)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEEECTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHc---------CCEEEEEeCCC
Confidence 999999987433222 22333332 24789999999999853 2233333333332 25799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|.||+++|++|....
T Consensus 172 g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 172 GENVEEAFLKCARTI 186 (200)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998654
No 101
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.85 E-value=1.8e-20 Score=171.72 Aligned_cols=154 Identities=25% Similarity=0.298 Sum_probs=111.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+++|++|+|||||+++|.+..+.....+.+. + .+...+.+++..+.+.||||||++.|..++..++..+|++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 79 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-D--SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC-E--EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc-e--EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence 36899999999999999999998776543333222 1 22334445677788999999999999999888999999999
Q ss_pred EEEEecCCCChh-hHHHHHHHHh----cCCCEEEEEeCCCCCCC--ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 571 IVVAADDGIRPQ-TNEAIAHAKA----AGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 571 LVVDasdgi~~q-t~EiL~~ak~----~~vPIIVViNKiDL~~a--~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
+|||+++..... ..+++..+.. .++|+++|+||+|+... ..+.........+ ++++++||++|.
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~ 150 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG---------IPYIETSAKTRQ 150 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT---------CCEEEECTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC---------CeEEEecCCCCC
Confidence 999998643222 1223333322 37999999999998652 2233333333332 579999999999
Q ss_pred CHHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLVA 656 (732)
Q Consensus 644 GIdeLfe~Ii~la 656 (732)
|+++++++|....
T Consensus 151 gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 151 GVEDAFYTLVREI 163 (166)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998643
No 102
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.85 E-value=9.8e-21 Score=181.18 Aligned_cols=159 Identities=17% Similarity=0.219 Sum_probs=111.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCC-ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccccc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k-~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
..+.++|+|+|++|+|||||+++|.+.. +.... ..|.++.... +.++ ++.+.||||||++.|..++..++..+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI--LPTIGFSIEK--FKSS--SLSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC--CCCSSEEEEE--EECS--SCEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc--CCccceeEEE--EEEC--CEEEEEEECCCCHHHHHHHHHHHhcC
Confidence 4567899999999999999999999776 33322 2344433333 3333 47899999999999999999999999
Q ss_pred CeEEEEEEecCCCChh-hHHHHHHHHh------cCCCEEEEEeCCCCCCC-ChHHHHHHHHHcCCCCCCCCCCCCEEEEe
Q 004746 567 DIAVIVVAADDGIRPQ-TNEAIAHAKA------AGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (732)
Q Consensus 567 DiVILVVDasdgi~~q-t~EiL~~ak~------~~vPIIVViNKiDL~~a-~~erv~~eL~elgl~~e~~gg~ipiVeVS 638 (732)
|++|+|||+++....+ ..+++..+.. .++|+|+|+||+|+... ..+++.+.+....+.. ..+++++||
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~S 167 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKD----KPWHICASD 167 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCS----SCEEEEECB
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccC----CceEEEEcc
Confidence 9999999998742222 1223333322 47899999999999654 3344443332111111 246899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 004746 639 ALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 639 AKtGeGIdeLfe~Ii~la 656 (732)
|++|.||++||++|....
T Consensus 168 a~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 168 AIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp TTTTBTHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 999999999999998643
No 103
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.4e-21 Score=189.44 Aligned_cols=157 Identities=20% Similarity=0.225 Sum_probs=111.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
...++|+|+|++|+|||||+++|.+..+.....+.++ ..+....+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG--VEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------C--CSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--ceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 3457999999999999999999998877655444333 33344444556777899999999999999999999999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+|||||+++....+. .+++..+.. .++|+|+|+||+|+.. ...+......... .++++++||++
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~ 159 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQEN---------QLLFTETSALN 159 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHT---------TCEEEECCCC-
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEeCCC
Confidence 999999987543332 223333333 3789999999999854 2223333333332 25799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|.||+++|++|....
T Consensus 160 ~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 160 SENVDKAFEELINTI 174 (223)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998654
No 104
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=3.5e-21 Score=184.79 Aligned_cols=157 Identities=18% Similarity=0.155 Sum_probs=116.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
...++|+|+|++|+|||||+++|++..+.....+ |....++...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVS--TVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEE--EETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCC--CeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 3468999999999999999999998766543332 33334444555567778899999999999999999999999999
Q ss_pred EEEEEEecCCCChh-hHHHHHHHHh---cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 569 AVIVVAADDGIRPQ-TNEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 569 VILVVDasdgi~~q-t~EiL~~ak~---~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+|||||+++....+ ...++..+.. .++|+|+|+||+|+... ..+.........+ ++++++||++
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~ 169 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG---------FDFFEASAKE 169 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------CEEEECBTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC---------CeEEEEECCC
Confidence 99999998742222 2233333333 47899999999998532 2233333333332 5799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|.||+++|++|....
T Consensus 170 ~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 170 NISVRQAFERLVDAI 184 (191)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998654
No 105
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.3e-20 Score=174.38 Aligned_cols=154 Identities=15% Similarity=0.193 Sum_probs=109.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+|+|++|+|||||+++|++..+.....+.+. .. +...+..++..+.+.||||||++.|..++..++..+|++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--~~-~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 79 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE--DT-YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFI 79 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC--EE-EEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc--cc-EEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEE
Confidence 47899999999999999999998776543333222 11 1223335667788999999999999998888899999999
Q ss_pred EEEEecCCCCh-hhHHHHHHHHh-----cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 571 IVVAADDGIRP-QTNEAIAHAKA-----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 571 LVVDasdgi~~-qt~EiL~~ak~-----~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+|||+++.... ....++..+.. .++|+++|+||+|+... ............ .++++++||++
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~ 150 (172)
T 2erx_A 80 LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW---------KCAFMETSAKL 150 (172)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH---------TCEEEECBTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh---------CCeEEEecCCC
Confidence 99999864222 12233333322 37899999999998532 222222222222 25799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|.||++++++|....
T Consensus 151 ~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 151 NHNVKELFQELLNLE 165 (172)
T ss_dssp TBSHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998643
No 106
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.2e-20 Score=184.07 Aligned_cols=163 Identities=24% Similarity=0.294 Sum_probs=110.8
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
....++|+|+|++|+|||||+++|.+..+.....+.++.. +...+.+++..+.+.||||||++.|..++..++..+|
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFEN---YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCE---EEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCC
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccce---EEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCC
Confidence 3446799999999999999999999887764443333222 2223445677789999999999999999999999999
Q ss_pred eEEEEEEecCCCChhh--HHHHHHHHhc--CCCEEEEEeCCCCCCCChHHHHHHHHHcCCCC----------CCCCCCCC
Q 004746 568 IAVIVVAADDGIRPQT--NEAIAHAKAA--GVPIVIAINKIDKDGANPERVMQELSSIGLMP----------EDWGGDIP 633 (732)
Q Consensus 568 iVILVVDasdgi~~qt--~EiL~~ak~~--~vPIIVViNKiDL~~a~~erv~~eL~elgl~~----------e~~gg~ip 633 (732)
++|+|||+++....+. ..++..+... ++|+|+|+||+|+.... ...+.+....... ..+ +..+
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~ 175 (207)
T 2fv8_A 99 VILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE--HVRTELARMKQEPVRTDDGRAMAVRI-QAYD 175 (207)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH--HHHHHHHHTTCCCCCHHHHHHHHHHT-TCSE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc--cchhhhhhcccCCCCHHHHHHHHHhc-CCCE
Confidence 9999999987432222 2233444333 79999999999985431 1111111110000 000 1237
Q ss_pred EEEEecCCCCCHHHHHHHHHHHH
Q 004746 634 MVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 634 iVeVSAKtGeGIdeLfe~Ii~la 656 (732)
++++||++|.||++||++|....
T Consensus 176 ~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 176 YLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 107
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=2e-20 Score=178.83 Aligned_cols=157 Identities=16% Similarity=0.211 Sum_probs=113.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
...++|+|+|++|+|||||+++|.+..+.....+.+ .. .+...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 82 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTI--ED-TYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCC--CE-EEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcc--cc-ceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence 346799999999999999999999877654333322 21 122333456777889999999999999988889999999
Q ss_pred EEEEEEecCCCChh----hHHHHHHHH--hcCCCEEEEEeCCCCCCC--ChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 569 AVIVVAADDGIRPQ----TNEAIAHAK--AAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 569 VILVVDasdgi~~q----t~EiL~~ak--~~~vPIIVViNKiDL~~a--~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
+|+|||+++..... +.+.+..+. ..++|+|+|+||+|+... ..+.........+ ++++++||+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~ 153 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK---------CAFMETSAK 153 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHT---------CEEEECBTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhC---------CeEEEEecC
Confidence 99999998632211 122222222 137899999999999653 2233333333322 579999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 004746 641 KGEKVDDLLETIMLVAE 657 (732)
Q Consensus 641 tGeGIdeLfe~Ii~lae 657 (732)
+|.||++||++|.....
T Consensus 154 ~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 154 MNYNVKELFQELLTLET 170 (199)
T ss_dssp TTBSHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987553
No 108
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.84 E-value=1.6e-20 Score=181.42 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=109.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
..+.++|+|+|++|+|||||+++|.+..+.. ...|.+.....+ .+++ +.+.||||||++.|..++..+++.+|
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~---~~~t~~~~~~~~--~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT---LQPTWHPTSEEL--AIGN--IKFTTFDLGGHIQARRLWKDYFPEVN 92 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCCC---CCCCCSCEEEEE--EETT--EEEEEEECCCSGGGTTSGGGGCTTCC
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCCc---cccCCCCCeEEE--EECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 4556799999999999999999999877642 122433333333 3343 78999999999999999888999999
Q ss_pred eEEEEEEecCCCChhh-HHHHHHHH----hcCCCEEEEEeCCCCCCC-ChHHHHHHHHHcCCCCC---CCCCCCCEEEEe
Q 004746 568 IAVIVVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPE---DWGGDIPMVQIS 638 (732)
Q Consensus 568 iVILVVDasdgi~~qt-~EiL~~ak----~~~vPIIVViNKiDL~~a-~~erv~~eL~elgl~~e---~~gg~ipiVeVS 638 (732)
++|+|+|+++....+. .+++..+. ..++|+++|+||+|+... ..+++.+.+........ .....+++++||
T Consensus 93 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T 1m2o_B 93 GIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS 172 (190)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeE
Confidence 9999999997543222 22333332 257899999999999763 23333332221110000 011246899999
Q ss_pred cCCCCCHHHHHHHHHH
Q 004746 639 ALKGEKVDDLLETIML 654 (732)
Q Consensus 639 AKtGeGIdeLfe~Ii~ 654 (732)
|++|+||+++|++|..
T Consensus 173 a~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 173 VVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp TTTTBSHHHHHHHHHT
T ss_pred CCcCCCHHHHHHHHHh
Confidence 9999999999999864
No 109
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.84 E-value=6.4e-21 Score=184.71 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=111.7
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
..+.++|+|+|.+|+|||||+++|++..+.....+.+... + ...+.+++..+.+.||||||++.|..++..++..+|
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENT--Y-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEE--E-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceE--E-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 3467899999999999999999999888765444433222 2 334445667788999999999999999999999999
Q ss_pred eEEEEEEecCCCChhh-HHHHHHHH----hcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 568 IAVIVVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 568 iVILVVDasdgi~~qt-~EiL~~ak----~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
++|+|||+++....+. ..++..+. ..++|+|+|+||+|+... ............ .++++++||
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa 168 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW---------GATFMESSA 168 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH---------TCEEEECCT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh---------CCeEEEEeC
Confidence 9999999986432222 22223322 247899999999998532 223333333333 257999999
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 004746 640 LKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~lae 657 (732)
++|.||+++|++|.....
T Consensus 169 ~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 169 RENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987543
No 110
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.84 E-value=8.2e-21 Score=181.18 Aligned_cols=157 Identities=16% Similarity=0.190 Sum_probs=113.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
...++|+|+|++|+|||||+++|.+..+...+.+.+.. .+...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE---NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE---EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccce---eEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 34579999999999999999999988765444333222 223445567778899999999999999999999999999
Q ss_pred EEEEEEecCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCC---------------ChHHHHHHHHHcCCCCCCCC
Q 004746 569 AVIVVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGA---------------NPERVMQELSSIGLMPEDWG 629 (732)
Q Consensus 569 VILVVDasdgi~~qt~--EiL~~ak~--~~vPIIVViNKiDL~~a---------------~~erv~~eL~elgl~~e~~g 629 (732)
+|+|||+++....+.. .++..+.. .++|+|+|+||+|+... ..++.......++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------- 154 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG------- 154 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC-------
Confidence 9999999874332221 22233332 37899999999999631 1222222222222
Q ss_pred CCCCEEEEecC-CCCCHHHHHHHHHHHH
Q 004746 630 GDIPMVQISAL-KGEKVDDLLETIMLVA 656 (732)
Q Consensus 630 g~ipiVeVSAK-tGeGIdeLfe~Ii~la 656 (732)
.+++++|||+ +|.||+++|++|...+
T Consensus 155 -~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 155 -AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp -CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred -CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 2579999999 6899999999998654
No 111
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.84 E-value=9.3e-21 Score=224.34 Aligned_cols=118 Identities=31% Similarity=0.436 Sum_probs=95.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc----------------ccccCCceeeeeeEEEEee------------cCCcc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA----------------AAEAGGITQGIGAYKVQVP------------VDGKL 541 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~----------------vse~~GtTrdI~~y~v~i~------------idgk~ 541 (732)
+.++|+|+||+|||||||+++|+..... .....++|+......+.+. .++..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 4578999999999999999999854111 1124566665555444443 24557
Q ss_pred eeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCC
Q 004746 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD 607 (732)
Q Consensus 542 i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~ 607 (732)
+.++|||||||.+|...+.++++.+|++|+|||++++...++..++.++...++|+|+|+||+|+.
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 899999999999999999999999999999999999999999998888888899999999999985
No 112
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.84 E-value=4.9e-21 Score=186.95 Aligned_cols=157 Identities=22% Similarity=0.201 Sum_probs=113.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCc----------ceeEEEEeCCCccccchh
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK----------LQPCVFLDTPGHEAFGAM 558 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk----------~i~ItLIDTPGhE~f~~~ 558 (732)
.+.++|+|+|++|+|||||+++|++..+.....+ |..+.++...+.+++. .+.+.||||||++.|..+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFIT--TVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEE--EEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCC--ceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 4457999999999999999999998777544333 4444444333434444 678999999999999999
Q ss_pred hcccccccCeEEEEEEecCCCChhhH-HHHHHHHh----cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCC
Q 004746 559 RARGARVTDIAVIVVAADDGIRPQTN-EAIAHAKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGG 630 (732)
Q Consensus 559 r~r~~~~ADiVILVVDasdgi~~qt~-EiL~~ak~----~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg 630 (732)
+..++..+|++|||||+++....+.. .++..+.. .++|+|+|+||+|+... ..+.........
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~--------- 171 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKY--------- 171 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHT---------
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHC---------
Confidence 88999999999999999874332222 22222221 46889999999999542 223333333332
Q ss_pred CCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 631 DIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 631 ~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
.+++++|||++|.||+++|++|....
T Consensus 172 ~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 172 GIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp TCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 25799999999999999999998654
No 113
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.84 E-value=2.9e-21 Score=189.01 Aligned_cols=163 Identities=20% Similarity=0.234 Sum_probs=118.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc--cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc----------cccc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV--AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EAFG 556 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~--~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh----------E~f~ 556 (732)
...++|+|+|++|+|||||+|+|++... .....+++|+++..+.+. ...+..+.||||||+ +.|.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVG---PAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEES---CTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEec---CCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 3568999999999999999999998762 456677888876544432 134568999999995 3334
Q ss_pred hhhcccccc---cCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCCh-HHHH----HHHHHcCCCCCCC
Q 004746 557 AMRARGARV---TDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVM----QELSSIGLMPEDW 628 (732)
Q Consensus 557 ~~r~r~~~~---ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~-erv~----~eL~elgl~~e~~ 628 (732)
.+...++.. +|++|+|+|++++......+++..+...++|+|+|+||+|+..... .... +.+....- ...
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~--~~~ 181 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD--AGY 181 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH--HTC
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh--ccc
Confidence 444445544 8889999999998888888888888888999999999999864221 1111 22222100 000
Q ss_pred CCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 629 GGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 629 gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
...++++++||++|.||++|+++|....
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 1346899999999999999999998654
No 114
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=1.4e-20 Score=177.60 Aligned_cols=157 Identities=22% Similarity=0.232 Sum_probs=108.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|....+. ... .|.++....+. ++ ++.+.||||||++.|...+..++..+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~--~t~~~~~~~~~--~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV-TTK--PTIGFNVETLS--YK--NLKLNVWDLGGQTSIRPYWRCYYADTAA 88 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE-EEC--SSTTCCEEEEE--ET--TEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC-ccC--CcCccceEEEE--EC--CEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 46789999999999999999999977662 222 23333333333 23 4789999999999999999999999999
Q ss_pred EEEEEEecCCCChh-hHHHHHHHH----hcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIRPQ-TNEAIAHAK----AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~~q-t~EiL~~ak----~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|+|+|+++....+ ..+++..+. ..++|+|+|+||+|+.... .+++...+...... ...++++++||++|
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~----~~~~~~~~~Sa~~~ 164 (183)
T 1moz_A 89 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELK----DRSWSIVASSAIKG 164 (183)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCC----SSCEEEEEEBGGGT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCccccc----CCceEEEEccCCCC
Confidence 99999998764332 233333332 2578999999999996543 33333322211111 12357999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.||++++++|....
T Consensus 165 ~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 165 EGITEGLDWLIDVI 178 (183)
T ss_dssp BTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998754
No 115
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.84 E-value=1.1e-20 Score=180.50 Aligned_cols=155 Identities=18% Similarity=0.291 Sum_probs=112.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc--ccccCCceeeeeeEEEEeecCCcceeEEEEeCCC----------ccccc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA--AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----------HEAFG 556 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~--vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG----------hE~f~ 556 (732)
.+.++|+|+|++|+|||||+++|++..+. .....++|+++..+.+ ++ .+.|||||| ++.|.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~---~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII----ND---ELHFVDVPGYGFAKVSKSEREAWG 93 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE----TT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE----CC---cEEEEECCCCCccccCHHHHHHHH
Confidence 35789999999999999999999987643 3455666766544432 22 699999999 66777
Q ss_pred hhhccccccc---CeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHH-cCCCCCCCCCC
Q 004746 557 AMRARGARVT---DIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSS-IGLMPEDWGGD 631 (732)
Q Consensus 557 ~~r~r~~~~A---DiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~e-lgl~~e~~gg~ 631 (732)
.++..++..+ |++|+|+|+++.......+++..+...++|+++|+||+|+.... ......++.+ +.. ...
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~ 168 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI-----DPE 168 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC-----CTT
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcc-----cCC
Confidence 7677666655 99999999999888887777778877889999999999996532 2222333332 221 124
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHH
Q 004746 632 IPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 632 ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
++++++||++|.||++|+++|...
T Consensus 169 ~~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 169 DELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CceEEEEccCCCCHHHHHHHHHHH
Confidence 689999999999999999999864
No 116
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.84 E-value=9.6e-21 Score=180.71 Aligned_cols=158 Identities=19% Similarity=0.191 Sum_probs=112.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|....+.. ..+ |.++....+.+ ..+.+.||||||++.|..++..+++.+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~--t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 92 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVP--TVGVNLETLQY----KNISFEVWDLGGQTGVRPYWRCYFSDTDA 92 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECS--STTCCEEEEEE----TTEEEEEEEECCSSSSCCCCSSSSTTCCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCC--CCceEEEEEEE----CCEEEEEEECCCCHhHHHHHHHHhhcCCE
Confidence 467899999999999999999998766542 222 33333333332 35789999999999999999899999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak~----~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|+|+|+++...... .+.+..+.. .++|+|+|+||+|+..... .++...+...... . ..+++++|||++|
T Consensus 93 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~Sa~~~ 168 (189)
T 2x77_A 93 VIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIM--N--RTWTIVKSSSKTG 168 (189)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC--S--SCEEEEECCTTTC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhcc--C--CceEEEEccCCCc
Confidence 999999997643322 233333322 3789999999999965432 3333332211111 1 2357999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 004746 643 EKVDDLLETIMLVAE 657 (732)
Q Consensus 643 eGIdeLfe~Ii~lae 657 (732)
.||++++++|.....
T Consensus 169 ~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 169 DGLVEGMDWLVERLR 183 (189)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999987543
No 117
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.84 E-value=3.4e-21 Score=184.95 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=84.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC--CccccccCCceeeeeeEEEEeecCCc--ceeEEEEeCCCccccchhhccccc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT--KVAAAEAGGITQGIGAYKVQVPVDGK--LQPCVFLDTPGHEAFGAMRARGAR 564 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~--k~~vse~~GtTrdI~~y~v~i~idgk--~i~ItLIDTPGhE~f~~~r~r~~~ 564 (732)
.+.++|+|+|++|+|||||+++|.+. .+.....+ |..+.++...+.+++. .+.+.||||||++.|..++..++.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAM--TSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp EEEEEEEEC------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCC--ccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 34579999999999999999999987 44433332 3333344444555665 789999999999999999999999
Q ss_pred ccCeEEEEEEecCCCChh-hHHHHHHHHh------cCCCEEEEEeCCCCCC-C---ChHHHHHHHHHcCCCCCCCCCCCC
Q 004746 565 VTDIAVIVVAADDGIRPQ-TNEAIAHAKA------AGVPIVIAINKIDKDG-A---NPERVMQELSSIGLMPEDWGGDIP 633 (732)
Q Consensus 565 ~ADiVILVVDasdgi~~q-t~EiL~~ak~------~~vPIIVViNKiDL~~-a---~~erv~~eL~elgl~~e~~gg~ip 633 (732)
.+|++|||||+++....+ ...++..+.. .++|+|+|+||+|+.. . ..++.......++ ++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~---------~~ 166 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT---------LD 166 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT---------CE
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC---------CE
Confidence 999999999998754322 2233444433 4789999999999965 1 2334444343332 57
Q ss_pred EEEEecCC-CCCHHHHHHHHHHHH
Q 004746 634 MVQISALK-GEKVDDLLETIMLVA 656 (732)
Q Consensus 634 iVeVSAKt-GeGIdeLfe~Ii~la 656 (732)
++++||++ |.||+++|++|....
T Consensus 167 ~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 167 FFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp EEECCC-------CHHHHHHHHHH
T ss_pred EEEeccCCCCcCHHHHHHHHHHHH
Confidence 99999999 999999999998643
No 118
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.84 E-value=3.2e-20 Score=178.65 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=113.1
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccccc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
...+.++|+|+|.+|+|||||+++|+...+.....+ |. +.+...+.+++..+.+.||||||++.|. +++.+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--Cc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 345568999999999999999999998877644433 32 2344556677888899999999998876 66889
Q ss_pred CeEEEEEEecCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCC-----CChHHHHHHHHHcCCCCCCCCCCCCEEE
Q 004746 567 DIAVIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDG-----ANPERVMQELSSIGLMPEDWGGDIPMVQ 636 (732)
Q Consensus 567 DiVILVVDasdgi~~qt-~EiL~~ak~----~~vPIIVViNKiDL~~-----a~~erv~~eL~elgl~~e~~gg~ipiVe 636 (732)
|++|+|||+++....+. ..++..+.. .++|+|+|+||+|+.. ...+........++ .++|++
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~--------~~~~~e 158 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK--------RCTYYE 158 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT--------TCEEEE
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcC--------CCeEEE
Confidence 99999999997543333 334444433 4689999999999842 22333333333332 357999
Q ss_pred EecCCCCCHHHHHHHHHHHH
Q 004746 637 ISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 637 VSAKtGeGIdeLfe~Ii~la 656 (732)
|||++|.||+++|++|....
T Consensus 159 ~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 159 TCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EBTTTTBTHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
No 119
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.84 E-value=4.5e-20 Score=175.82 Aligned_cols=156 Identities=24% Similarity=0.293 Sum_probs=104.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|.+|+|||||+++|+...+.....+ ++.+ .+...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP-TIED--SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCT-TCCE--EEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCC-ccce--EEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 347999999999999999999998776543333 2222 2233444567778899999999999999999999999999
Q ss_pred EEEEEecCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCC--ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~~ak~----~~vPIIVViNKiDL~~a--~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|+|||+++...... ..++..+.. .++|+++|+||+|+... ..+...+.....+ ++++++||++|
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~ 167 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYG---------IPFIETSAKTR 167 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT---------CCEEECCTTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcC---------CeEEEEeCCCC
Confidence 99999987433222 222222222 37899999999998652 2333333333332 57999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 004746 643 EKVDDLLETIMLVAE 657 (732)
Q Consensus 643 eGIdeLfe~Ii~lae 657 (732)
.|+++++++|.....
T Consensus 168 ~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 168 QGVEDAFYTLVREIR 182 (190)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987543
No 120
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.84 E-value=2.5e-20 Score=178.35 Aligned_cols=156 Identities=24% Similarity=0.261 Sum_probs=109.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|.+..+... ..|.++....+. ++ .+.+.||||||++.|..++..++..+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~---~~t~g~~~~~~~--~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 86 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI---TPTQGFNIKSVQ--SQ--GFKLNVWDIGGQRKIRPYWRSYFENTDI 86 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE---EEETTEEEEEEE--ET--TEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcc---cCcCCeEEEEEE--EC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 4568999999999999999999997754311 123332222233 33 5789999999999999888889999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHH----HhcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHA----KAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~a----k~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|+|||+++...... .+++..+ ...++|+++|+||+|+..... +++.+.+.. .... ...+++++|||++|
T Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~Sa~~g 162 (181)
T 1fzq_A 87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL-HTIR---DRVWQIQSCSALTG 162 (181)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG-GGCC---SSCEEEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCc-hhcc---CCceEEEEccCCCC
Confidence 999999987533222 2233322 124789999999999976432 233322211 1111 12357999999999
Q ss_pred CCHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLV 655 (732)
Q Consensus 643 eGIdeLfe~Ii~l 655 (732)
+||+++|++|...
T Consensus 163 ~gi~~l~~~l~~~ 175 (181)
T 1fzq_A 163 EGVQDGMNWVCKN 175 (181)
T ss_dssp TTHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999753
No 121
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=182.96 Aligned_cols=157 Identities=18% Similarity=0.196 Sum_probs=112.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch-hhcccccccC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA-MRARGARVTD 567 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~-~r~r~~~~AD 567 (732)
...++|+|+|.+|||||||+++|.+......+.++++.+ .+...+.+++..+.+.||||+|++.+.. ++..+++.+|
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPED--TYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTT--EEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccc--eEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 345799999999999999999997654443444555543 3344455678888999999999988765 6667789999
Q ss_pred eEEEEEEecCCCChh-hHHHHHHHHh----cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 568 IAVIVVAADDGIRPQ-TNEAIAHAKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 568 iVILVVDasdgi~~q-t~EiL~~ak~----~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
++|||||+++..... ..+++..+.. .++|+|+|+||+|+... ..++........ .++++++||
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~---------~~~~~e~Sa 169 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL---------SCKHIETSA 169 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHT---------TCEEEEEBT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHh---------CCEEEEEcC
Confidence 999999998743222 2233333332 37899999999999642 223333222222 257999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 004746 640 LKGEKVDDLLETIMLVA 656 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~la 656 (732)
++|.||+++|++|+...
T Consensus 170 ~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 170 ALHHNTRELFEGAVRQI 186 (195)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998754
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.84 E-value=1.9e-20 Score=177.65 Aligned_cols=157 Identities=20% Similarity=0.318 Sum_probs=115.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCC----------ccccch
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----------HEAFGA 557 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG----------hE~f~~ 557 (732)
...++|+|+|++|+|||||+++|++..+. .....++|.++..+.. + ..+.|||||| ++.|..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~----~---~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV----N---SKYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE----T---TTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE----C---CcEEEEECCCCccccCChhhHHHHHH
Confidence 34579999999999999999999987643 4455566666533321 2 3689999999 556666
Q ss_pred hhcccccc---cCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCC
Q 004746 558 MRARGARV---TDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIP 633 (732)
Q Consensus 558 ~r~r~~~~---ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ip 633 (732)
++..++.. +|++++|+|+++........++..+...++|+|+|+||+|+.... .......+..... ..+.++
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 169 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFS----KYGEYT 169 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHH----SSCCSC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHh----hcCCCc
Confidence 66656544 499999999998888888888888888899999999999986532 2222222222100 012468
Q ss_pred EEEEecCCCCCHHHHHHHHHHHH
Q 004746 634 MVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 634 iVeVSAKtGeGIdeLfe~Ii~la 656 (732)
++++||++|.||+++|++|....
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEecCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998653
No 123
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.84 E-value=1.9e-20 Score=182.46 Aligned_cols=162 Identities=20% Similarity=0.201 Sum_probs=107.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCc-ceeEEEEeCCCccccch-hhccccccc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK-LQPCVFLDTPGHEAFGA-MRARGARVT 566 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk-~i~ItLIDTPGhE~f~~-~r~r~~~~A 566 (732)
.+.++|+|+|++|+|||||+++|++..+.... ..++ ...+.+ .+++. .+.+.||||||++.|.. ++..++..+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~-~~~~--~~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 79 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIY--KVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA 79 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCS--CEEEEE--ECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccc-CCcc--eeeEEE--EecCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence 45689999999999999999999987765433 2333 233333 34443 57899999999999987 777888999
Q ss_pred CeEEEEEEecCCC--ChhhHHHHHHH-H-----hcCCCEEEEEeCCCCCCC-ChHHHHHHHHHc----------------
Q 004746 567 DIAVIVVAADDGI--RPQTNEAIAHA-K-----AAGVPIVIAINKIDKDGA-NPERVMQELSSI---------------- 621 (732)
Q Consensus 567 DiVILVVDasdgi--~~qt~EiL~~a-k-----~~~vPIIVViNKiDL~~a-~~erv~~eL~el---------------- 621 (732)
|++|||||+++.. .....+.+... . ..++|+|+|+||+|+... ..+.....+...
T Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~ 159 (214)
T 2fh5_B 80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLD 159 (214)
T ss_dssp EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-------
T ss_pred CEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccccc
Confidence 9999999998611 11112222221 1 236899999999999754 333333332210
Q ss_pred -----CCCCC---------CCCCCCCEEEEecCCC------CCHHHHHHHHHHH
Q 004746 622 -----GLMPE---------DWGGDIPMVQISALKG------EKVDDLLETIMLV 655 (732)
Q Consensus 622 -----gl~~e---------~~gg~ipiVeVSAKtG------eGIdeLfe~Ii~l 655 (732)
..... .+...++|++|||++| .||+++|++|...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 00011 1112678999999999 9999999999754
No 124
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=183.83 Aligned_cols=158 Identities=18% Similarity=0.204 Sum_probs=95.7
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
..+.++|+|+|++|+|||||+++|++..+.....+.+. ..+...+.+++..+.+.||||||++.|..++..++..+|
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 107 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF---ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDAS 107 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCC---EEEEEEEEETTEEEEEEEEEC---------------CEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc---eeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCC
Confidence 34568999999999999999999998776544333222 223344456777789999999999999999999999999
Q ss_pred eEEEEEEecCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCCCh---------------HHHHHHHHHcCCCCCCC
Q 004746 568 IAVIVVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGANP---------------ERVMQELSSIGLMPEDW 628 (732)
Q Consensus 568 iVILVVDasdgi~~qt~--EiL~~ak~--~~vPIIVViNKiDL~~a~~---------------erv~~eL~elgl~~e~~ 628 (732)
++|+|||+++....+.. .++..+.. .++|+|+|+||+|+..... ++........+
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------ 181 (214)
T 2j1l_A 108 VLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG------ 181 (214)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT------
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcC------
Confidence 99999999874332222 23333332 3789999999999864321 11112222221
Q ss_pred CCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 629 GGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 629 gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
..++++|||++|.||+++|++|....
T Consensus 182 --~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 182 --AVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp --CSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 13799999999999999999998754
No 125
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.84 E-value=5.9e-21 Score=186.51 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=110.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeec-CCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~i-dgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
..++|+|+|++|+|||||+++|++..+.....+.+ +...+...+.. ++..+.+.||||||++.|..++..++..+|+
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATV--GAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTT--TEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--ceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 45799999999999999999999777654333322 22233333333 3334789999999999999888888999999
Q ss_pred EEEEEEecCCCChhhH----HHHHHHHhcCCCEEEEEeCCCCCCCC--hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 569 AVIVVAADDGIRPQTN----EAIAHAKAAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 569 VILVVDasdgi~~qt~----EiL~~ak~~~vPIIVViNKiDL~~a~--~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+|+|||+++....+.. ..+......++|+|+|+||+|+.... .......+... ..+++++|||++|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~g 159 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKG--------KNYEYFEISAKTA 159 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTT--------CCCEEEEEBTTTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH--------cCCcEEEEecCCC
Confidence 9999999975433332 22333333468999999999996431 11122222111 1368999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 004746 643 EKVDDLLETIMLVAE 657 (732)
Q Consensus 643 eGIdeLfe~Ii~lae 657 (732)
.||+++|++|.....
T Consensus 160 ~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 160 HNFGLPFLHLARIFT 174 (218)
T ss_dssp BTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987653
No 126
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.84 E-value=2.6e-20 Score=180.14 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=106.8
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~AD 567 (732)
..+.++|+|+|++|+|||||+++|....+.. .. .|.++....+. ...+.+.||||||++.|..++..++..+|
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~--~t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TI--PTIGFNVETVE----YKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EE--EETTEEEEEEE----ETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cC--CcCceeEEEEE----ECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 4567899999999999999999999777652 22 24443322222 24578999999999999988888999999
Q ss_pred eEEEEEEecCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 568 IAVIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 568 iVILVVDasdgi~~qt-~EiL~~ak~----~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
++|+|||+++...... .+++..+.. .++|+|+|+||+|+.... .+++...+... ... ...+++++|||++
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~-~~~---~~~~~~~~~SA~~ 174 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQ-HLR---SRTWYVQATCATQ 174 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG-GCS---SCCEEEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcc-ccc---CCceEEEECcCCC
Confidence 9999999987533222 233333322 378999999999996543 23333322211 111 1235799999999
Q ss_pred CCCHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLV 655 (732)
Q Consensus 642 GeGIdeLfe~Ii~l 655 (732)
|.||+++|++|...
T Consensus 175 g~gi~~l~~~l~~~ 188 (192)
T 2b6h_A 175 GTGLYDGLDWLSHE 188 (192)
T ss_dssp TBTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999999864
No 127
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.83 E-value=2.3e-20 Score=175.73 Aligned_cols=150 Identities=15% Similarity=0.225 Sum_probs=106.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
+.++|+|+|++|+|||||+++|.+..+.. ..+ |.. ..+...+.+++..+.+.||||||++. ..+++.+|++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~--t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ 76 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEK--TES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAV 76 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSS--CSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCC--Ccc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEE
Confidence 45799999999999999999999887764 323 222 23344455677778899999999886 3456889999
Q ss_pred EEEEEecCCCChhhHH----HHHHHHh---cCCCEEEEEeCCCCCC-----CChHHHHHHHHHcCCCCCCCCCCCCEEEE
Q 004746 570 VIVVAADDGIRPQTNE----AIAHAKA---AGVPIVIAINKIDKDG-----ANPERVMQELSSIGLMPEDWGGDIPMVQI 637 (732)
Q Consensus 570 ILVVDasdgi~~qt~E----iL~~ak~---~~vPIIVViNKiDL~~-----a~~erv~~eL~elgl~~e~~gg~ipiVeV 637 (732)
|+|||+++....+... .+..+.. .++|+|+|+||+|+.. ...++........+ .++++++
T Consensus 77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~--------~~~~~~~ 148 (178)
T 2iwr_A 77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK--------RCSYYET 148 (178)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS--------SEEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc--------CCeEEEE
Confidence 9999998754333222 2222322 3689999999999832 22333333333321 3579999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 004746 638 SALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 638 SAKtGeGIdeLfe~Ii~la 656 (732)
||++|.||+++|++|....
T Consensus 149 Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 149 XATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp BTTTTBTHHHHHHHHHHHH
T ss_pred eccccCCHHHHHHHHHHHH
Confidence 9999999999999998654
No 128
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=4e-20 Score=178.12 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=111.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|+...+.....+.+... +...+.+++..+.+.||||||++. ..++..++..+|+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLEST---YRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE---EEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCce---EEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 456899999999999999999999887764444433222 233445577778999999999988 6677788899999
Q ss_pred EEEEEEecCCCChh-hHHHHHH----HHhcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 569 AVIVVAADDGIRPQ-TNEAIAH----AKAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 569 VILVVDasdgi~~q-t~EiL~~----ak~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
+|+|||+++..... ..+++.. ....++|+|+|+||+|+.. ...++........ .+++++|||+
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~ 172 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL---------ACAFYECSAC 172 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH---------TSEEEECCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh---------CCeEEEECCC
Confidence 99999998732211 1122222 2235889999999999854 2233333333332 2579999999
Q ss_pred CCC-CHHHHHHHHHHHH
Q 004746 641 KGE-KVDDLLETIMLVA 656 (732)
Q Consensus 641 tGe-GIdeLfe~Ii~la 656 (732)
+|. ||+++|++|....
T Consensus 173 ~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 173 TGEGNITEIFYELCREV 189 (196)
T ss_dssp TCTTCHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 999 9999999998654
No 129
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=199.87 Aligned_cols=226 Identities=15% Similarity=0.135 Sum_probs=138.3
Q ss_pred cchHHHHHHHhcCCHHHHHHHHHhCCCcccccccCCHHHHHHhhhhcCCeeeecCchhhHHHhhhccc----------cC
Q 004746 411 GMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDL----------FD 480 (732)
Q Consensus 411 ~iav~qLag~Ls~~i~eiik~L~~lG~~~~in~~Ld~e~ie~ia~e~~~~~i~~~~~~ieell~~~~~----------~~ 480 (732)
.-+-.++.- |...-+...+.+|+.+.+...+..++.+.....+..|..... .+.+.... ..
T Consensus 84 ~~~~~~~~~-~~~~gN~~~n~~~e~~~~~~~~~~i~~~y~s~~A~lYr~kl~--------~~~~~~~~~~~~~~~~~~~~ 154 (329)
T 3o47_A 84 KWKDIELEK-MKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVV--------ALAEGREWSLESSPAQNWTP 154 (329)
T ss_dssp CCCHHHHHH-HHHCCHHHHHHHHHTCSSCCTTCCHHHHHHSHHHHHHHHHHH--------HHHTTCCCCSCC-----CCC
T ss_pred CCCHHHHHH-HHHhCcHHHHHHHHhcCCCCCCCCccccccchHHHHHhhhcc--------ccccCCccccccccccccCC
Confidence 344455544 333455667788887666666666666554444443332210 00000000 00
Q ss_pred hhhhhcccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhc
Q 004746 481 EEDLDKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRA 560 (732)
Q Consensus 481 e~~~~~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~ 560 (732)
.........+.++|+|+|++|+|||||+++|+...+.... .|+++.++.+. ...+.+.||||||++.|..++.
T Consensus 155 ~~~~~~~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~---pT~~~~~~~~~----~~~~~l~i~Dt~G~~~~~~~~~ 227 (329)
T 3o47_A 155 PQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWR 227 (329)
T ss_dssp CC------CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE---EETTEEEEEEE----ETTEEEEEEECC-----CCSHH
T ss_pred CCcccccccCcceEEEECCCCccHHHHHHHHhCCCCCCcc---cccceEEEEEe----cCcEEEEEEECCCCHhHHHHHH
Confidence 0111223446679999999999999999999987765332 26555554443 3457899999999999999999
Q ss_pred ccccccCeEEEEEEecCCCChhh-HHHHH-HHHh---cCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCCE
Q 004746 561 RGARVTDIAVIVVAADDGIRPQT-NEAIA-HAKA---AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPM 634 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt-~EiL~-~ak~---~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ipi 634 (732)
.++..+|++|||||+++...... .+.+. .+.. .++|+|+|+||+|+.... .+++...+...... ...+++
T Consensus 228 ~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~----~~~~~~ 303 (329)
T 3o47_A 228 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR----HRNWYI 303 (329)
T ss_dssp HHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCC----SSCEEE
T ss_pred HHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhh----cCCCEE
Confidence 99999999999999987543322 22222 2222 378999999999997653 33343333221111 124689
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q 004746 635 VQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~la 656 (732)
++|||++|.||++||++|....
T Consensus 304 ~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 304 QATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp EECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHH
Confidence 9999999999999999998654
No 130
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.83 E-value=3.5e-20 Score=174.51 Aligned_cols=150 Identities=19% Similarity=0.246 Sum_probs=103.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch------hhccccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA------MRARGAR 564 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~------~r~r~~~ 564 (732)
.++|+|+|++|+|||||+++|.+..+..+..+++|.+.....+. ++ +..+.+|||||++.|.. +...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~--~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFE--YN--GEKFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEE--ET--TEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEE--EC--CcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 36899999999999999999998777666667777664433333 23 36899999999988752 2234443
Q ss_pred --ccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC-ChHHHHHHHH-HcCCCCCCCCCCCCEEEEecC
Q 004746 565 --VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPERVMQELS-SIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 565 --~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a-~~erv~~eL~-elgl~~e~~gg~ipiVeVSAK 640 (732)
.+|++++|+|+++. .....++..+...++|+|+|+||+|+... ........+. .+ .++++++||+
T Consensus 79 ~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~SA~ 147 (165)
T 2wji_A 79 NEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKIL---------GVKVVPLSAA 147 (165)
T ss_dssp HHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHH---------TSCEEECBGG
T ss_pred cCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHh---------CCCEEEEEcC
Confidence 79999999999862 23344555555668999999999998421 0000112222 22 2579999999
Q ss_pred CCCCHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLV 655 (732)
Q Consensus 641 tGeGIdeLfe~Ii~l 655 (732)
+|.||+++|++|...
T Consensus 148 ~~~~v~~l~~~l~~~ 162 (165)
T 2wji_A 148 KKMGIEELKKAISIA 162 (165)
T ss_dssp GTBSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
No 131
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.83 E-value=2.6e-20 Score=183.09 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=113.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
...++|+|+|.+|+|||||+++|.+..+...+.+.+... +...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN---YTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE---EEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccee---EEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 456799999999999999999999887764444433222 23445567778899999999999999999999999999
Q ss_pred EEEEEEecCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCC---------------ChHHHHHHHHHcCCCCCCCC
Q 004746 569 AVIVVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGA---------------NPERVMQELSSIGLMPEDWG 629 (732)
Q Consensus 569 VILVVDasdgi~~qt~--EiL~~ak~--~~vPIIVViNKiDL~~a---------------~~erv~~eL~elgl~~e~~g 629 (732)
+|||||+++....... .++..+.. .++|+|+|+||+|+... ..++.......++
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------- 175 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG------- 175 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC-------
Confidence 9999999874322221 22233332 37899999999998531 1222222222222
Q ss_pred CCCCEEEEecC-CCCCHHHHHHHHHHHH
Q 004746 630 GDIPMVQISAL-KGEKVDDLLETIMLVA 656 (732)
Q Consensus 630 g~ipiVeVSAK-tGeGIdeLfe~Ii~la 656 (732)
.++|++|||+ +|.||+++|+.|...+
T Consensus 176 -~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 176 -AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp -CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred -CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 2579999999 6899999999998654
No 132
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.83 E-value=3e-21 Score=189.71 Aligned_cols=155 Identities=16% Similarity=0.155 Sum_probs=112.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcccc--ccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccccc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAA--EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vs--e~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
.+.++|+|+|++|+|||||+++|+...+... ...++|. +...+.+++..+.+.||||||++.|..++..++..+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----HPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEE----EEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE----EEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 4557999999999999999999775544322 2233333 334455677788999999999999999999999999
Q ss_pred CeEEEEEEecCCCChhhH-HHHHHHHh--cCCCEEEEEeCCCCCCCChH-HHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 567 DIAVIVVAADDGIRPQTN-EAIAHAKA--AGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 567 DiVILVVDasdgi~~qt~-EiL~~ak~--~~vPIIVViNKiDL~~a~~e-rv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|++|+|||+++....+.. .++..+.. .++|+|+|+||+|+...... ......... .+++++|||++|
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~ 159 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK---------NLQYYDISAKSN 159 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHH---------TCEEEECBGGGT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHc---------CCEEEEEeCCCC
Confidence 999999999975433322 23333322 27899999999999653221 111111121 357999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.||+++|++|....
T Consensus 160 ~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 160 YNFEKPFLWLARKL 173 (221)
T ss_dssp BTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
No 133
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.83 E-value=3.5e-20 Score=194.91 Aligned_cols=158 Identities=28% Similarity=0.389 Sum_probs=122.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccc----------hhh
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG----------AMR 559 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~----------~~r 559 (732)
...|+|+|++|||||||+|+|++.++. .+..+++|++.....+.. +.++.+.||||||+..+. ...
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~---~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI---PNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE---TTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec---CCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 457999999999999999999988876 567778887653333221 225789999999986544 455
Q ss_pred cccccccCeEEEEEEecCCCChhhHHH-HHHHHhcCCCEEEEEeCCCCC-C-CChHHHHHHHHHcCCCCCCCCCCCCEEE
Q 004746 560 ARGARVTDIAVIVVAADDGIRPQTNEA-IAHAKAAGVPIVIAINKIDKD-G-ANPERVMQELSSIGLMPEDWGGDIPMVQ 636 (732)
Q Consensus 560 ~r~~~~ADiVILVVDasdgi~~qt~Ei-L~~ak~~~vPIIVViNKiDL~-~-a~~erv~~eL~elgl~~e~~gg~ipiVe 636 (732)
..++..+|++|+|+|++++...++... +..+...++|+|+|+||+|+. . .........+.+.. +...++++
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~------~~~~~i~~ 160 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH------PELTEIVP 160 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC------TTCCCEEE
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhc------cCCCeEEE
Confidence 567789999999999999888888887 777887899999999999986 3 23344444444421 12367999
Q ss_pred EecCCCCCHHHHHHHHHHHHh
Q 004746 637 ISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 637 VSAKtGeGIdeLfe~Ii~lae 657 (732)
+||++|.|+++|+++|.....
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSC
T ss_pred EeCCCCCCHHHHHHHHHHhCc
Confidence 999999999999999987543
No 134
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.83 E-value=4.7e-20 Score=177.32 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=108.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|.+|+|||||+++|++..+.....+.+ .. .+...+.+++..+.+.||||||++.|..+ ..++..+|+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~--~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNL--ED-TYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTC--CE-EEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc--cc-eeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 345799999999999999999999887654433322 22 12334456777889999999999988765 567899999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHHh------cCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEe
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAKA------AGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak~------~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVS 638 (732)
+|+|||+++....+. ..++..+.. .++|+|+|+||+|+.. ...++..+....++ +++++||
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~---------~~~~e~S 165 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFG---------CLFFEVS 165 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT---------CEEEECC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcC---------CcEEEEe
Confidence 999999997432222 223333322 4899999999999853 23334444444432 5799999
Q ss_pred c-CCCCCHHHHHHHHHHHH
Q 004746 639 A-LKGEKVDDLLETIMLVA 656 (732)
Q Consensus 639 A-KtGeGIdeLfe~Ii~la 656 (732)
| ++|.||+++|++|....
T Consensus 166 a~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp SSSCSHHHHHHHHHHHHHH
T ss_pred ecCccccHHHHHHHHHHHH
Confidence 9 89999999999998653
No 135
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.82 E-value=3.1e-20 Score=195.42 Aligned_cols=154 Identities=23% Similarity=0.248 Sum_probs=117.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc--------cchhhc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--------FGAMRA 560 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~--------f~~~r~ 560 (732)
+..+|+|+|++|+|||||+|+|++.++. .+..+++|++..... +......++||||||+.. |.....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i----~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~ 81 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI----LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE----EEETTEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE----EEeCCcEEEEecCccccchhhHHHHHHHHHHH
Confidence 3457999999999999999999988875 566777887632211 123457899999999766 444555
Q ss_pred ccccccCeEEEEEEecCCCChhhHHHHHHHHhc--CCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEe
Q 004746 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA--GVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~--~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVS 638 (732)
.+++.+|++|+|||++++....+..++..++.. ++|+|+|+||+|+...... +...+..+ ....+++++|
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~-------~~~~~~~~iS 153 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE-AMKAYHEL-------LPEAEPRMLS 153 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-HHHHHHHT-------STTSEEEECC
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH-HHHHHHHh-------cCcCcEEEEe
Confidence 678999999999999998887777777777776 8999999999999643221 33334333 1224799999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 004746 639 ALKGEKVDDLLETIMLV 655 (732)
Q Consensus 639 AKtGeGIdeLfe~Ii~l 655 (732)
|++|.|+++|++.|...
T Consensus 154 A~~g~gv~~l~~~l~~~ 170 (301)
T 1wf3_A 154 ALDERQVAELKADLLAL 170 (301)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999999754
No 136
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=1.8e-20 Score=205.75 Aligned_cols=161 Identities=20% Similarity=0.372 Sum_probs=118.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc----------cccch
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EAFGA 557 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh----------E~f~~ 557 (732)
...++|+|+|++|||||||+|+|++..+. ++..+++|++.....+. +++ ..+.||||||+ |.|..
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~--~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~ 248 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFT--YNQ--QEFVIVDTAGMRKKGKVYETTEKYSV 248 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEE--ETT--EEEEETTHHHHTCBTTBCCCCSHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEE--ECC--eEEEEEECCCcCcCccccchHHHHHH
Confidence 45689999999999999999999987764 67788999886544443 333 46999999998 55655
Q ss_pred hhc-ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCCh---HHHHHHHHHcCCCCCCCCCCCC
Q 004746 558 MRA-RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP---ERVMQELSSIGLMPEDWGGDIP 633 (732)
Q Consensus 558 ~r~-r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~---erv~~eL~elgl~~e~~gg~ip 633 (732)
++. .++..+|++|+|+|++++...++.+++..+...++|+|+|+||+|+..... ++....+... +. +...++
T Consensus 249 ~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~-l~---~~~~~~ 324 (436)
T 2hjg_A 249 LRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDH-FQ---FLDYAP 324 (436)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHH-CG---GGTTSC
T ss_pred HHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHh-cc---cCCCCC
Confidence 554 467899999999999999999999988888888999999999999965432 3343443332 11 112468
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHh
Q 004746 634 MVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 634 iVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
++++||++|.||++||+.|.....
T Consensus 325 ~~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 325 ILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEEEecccCCCHHHHHHHHHHHHH
Confidence 999999999999999999886554
No 137
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.82 E-value=1.8e-20 Score=177.46 Aligned_cols=155 Identities=22% Similarity=0.266 Sum_probs=106.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCC-----------ccccchhhc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG-----------HEAFGAMRA 560 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG-----------hE~f~~~r~ 560 (732)
++|+|+|++|+|||||+++|++..+.....+++|.+...+. +. .+.|||||| ++.|..++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~----~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 73 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE----WK----NHKIIDMPGFGFMMGLPKEVQERIKDEIV 73 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE----ET----TEEEEECCCBSCCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEe----cC----CEEEEECCCccccccCCHHHHHHHHHHHH
Confidence 58999999999999999999998887777777776653322 22 689999999 566666666
Q ss_pred ccccc-cCeEEEEEEecCCCC--------------hhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCC
Q 004746 561 RGARV-TDIAVIVVAADDGIR--------------PQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMP 625 (732)
Q Consensus 561 r~~~~-ADiVILVVDasdgi~--------------~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~ 625 (732)
.++.. ++++++|+++.+... .++.+.+..+...++|+++|+||+|+.....+........++...
T Consensus 74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL 153 (190)
T ss_dssp HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG
T ss_pred HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh
Confidence 66654 555444444444322 122334455566789999999999997644222333333344322
Q ss_pred CCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 626 EDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 626 e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
..| ..++++|||++|.||+++|++|....
T Consensus 154 ~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 154 SEI--DKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp GGH--HHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcc--CCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 111 23689999999999999999998754
No 138
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.82 E-value=1.5e-20 Score=179.05 Aligned_cols=150 Identities=23% Similarity=0.295 Sum_probs=107.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh--------hc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM--------RA 560 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~--------r~ 560 (732)
.+.+|+|+|++|+|||||+++|.+..+. ....+++|++.....+. +++ ..+.||||||++.+... ..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH--IDG--MPLHIIDTAGLREASDEVERIGIERAW 78 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEE--ETT--EEEEEEECCCCSCCSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEE--ECC--eEEEEEECCCcccchhHHHHHHHHHHH
Confidence 4578999999999999999999987643 55667788765433333 343 46899999998654311 11
Q ss_pred ccccccCeEEEEEEecCCCChhhHHHHHHHHh---cCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEE
Q 004746 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKA---AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQI 637 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~---~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeV 637 (732)
.+++.+|++|+|||+++....+..+++..+.. .++|+|+|+||+|+.....+ +. .. ...++++|
T Consensus 79 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~----------~~-~~--~~~~~~~~ 145 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG----------MS-EV--NGHALIRL 145 (172)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE----------EE-EE--TTEEEEEC
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh----------hh-hc--cCCceEEE
Confidence 35689999999999998765555555544433 36899999999998432100 00 00 13579999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 004746 638 SALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 638 SAKtGeGIdeLfe~Ii~la 656 (732)
||++|.||++||++|....
T Consensus 146 SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 146 SARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp CTTTCTTHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998654
No 139
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.82 E-value=1.3e-19 Score=179.87 Aligned_cols=161 Identities=17% Similarity=0.238 Sum_probs=110.1
Q ss_pred hcccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc------cc----
Q 004746 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH------EA---- 554 (732)
Q Consensus 485 ~~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh------E~---- 554 (732)
..+..+.++|+|+|.+|+|||||+++|++..+.....+++|.++....+.. ....+.||||||+ +.
T Consensus 23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~DtpG~~~~~~~~~~~~~ 98 (228)
T 2qu8_A 23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH----KLNKYQIIDTPGLLDRAFENRNTIE 98 (228)
T ss_dssp CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE----TTEEEEEEECTTTTTSCGGGCCHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec----CCCeEEEEECCCCcCcccchhhhHH
Confidence 334456789999999999999999999988877666777787765444332 3468999999998 33
Q ss_pred cchhhcccccccCeEEEEEEecCCCChh---hHHHHHHHHhc--CCCEEEEEeCCCCCCCC--hHH---HHHHHHHcCCC
Q 004746 555 FGAMRARGARVTDIAVIVVAADDGIRPQ---TNEAIAHAKAA--GVPIVIAINKIDKDGAN--PER---VMQELSSIGLM 624 (732)
Q Consensus 555 f~~~r~r~~~~ADiVILVVDasdgi~~q---t~EiL~~ak~~--~vPIIVViNKiDL~~a~--~er---v~~eL~elgl~ 624 (732)
+..+ ..++..+|++|||||+++..... +.+++..+... ++|+|+|+||+|+.... ... ....+....
T Consensus 99 ~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-- 175 (228)
T 2qu8_A 99 MTTI-TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNV-- 175 (228)
T ss_dssp HHHH-HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHC--
T ss_pred HHHH-HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhc--
Confidence 2222 23457789999999999865432 34555555554 79999999999986421 111 222222211
Q ss_pred CCCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 625 PEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 625 ~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
+..+++++|||++|.||+++|++|....
T Consensus 176 ----~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 176 ----KNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp ----CSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----CCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 1125799999999999999999998654
No 140
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.82 E-value=7.1e-20 Score=177.05 Aligned_cols=161 Identities=17% Similarity=0.220 Sum_probs=105.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhh---ccccc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMR---ARGAR 564 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r---~r~~~ 564 (732)
..+.++|+|+|.+|||||||+++|.+.... ....+.+.........+ .++..+.+.||||||++.|..+. ..+++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSP-NETLFLESTNKIYKDDI-SNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCG-GGGGGCCCCCSCEEEEE-CCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCC-cceeeeccccceeeeec-cCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 455789999999999999999988764322 22112221111222222 13566899999999999998777 78889
Q ss_pred ccCeEEEEEEecCCCChhhHH---HHHHH--HhcCCCEEEEEeCCCCCCCCh----HH-H----HHHHHHcCCCCCCCCC
Q 004746 565 VTDIAVIVVAADDGIRPQTNE---AIAHA--KAAGVPIVIAINKIDKDGANP----ER-V----MQELSSIGLMPEDWGG 630 (732)
Q Consensus 565 ~ADiVILVVDasdgi~~qt~E---iL~~a--k~~~vPIIVViNKiDL~~a~~----er-v----~~eL~elgl~~e~~gg 630 (732)
.+|++|||||+++........ ++..+ ...++|+|+|+||+|+..... .+ + ...+..... .. .
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~--~~--~ 170 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL--EK--L 170 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC--TT--S
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh--hc--C
Confidence 999999999999863222222 23322 123789999999999864211 11 1 112222111 01 2
Q ss_pred CCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 631 DIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 631 ~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
.++|++|||++ .||+++|+.|+..
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHH
T ss_pred CcceEEEEech-hhHHHHHHHHHHH
Confidence 46899999999 9999999998753
No 141
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=1.7e-19 Score=171.23 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=111.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccc------hhhcccc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG------AMRARGA 563 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~------~~r~r~~ 563 (732)
+.++|+|+|++|+|||||+++|.+..+.....+++|.+.....+. ++ ++.+.||||||++.|. .++..++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~--~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFE--YN--GEKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEE--ET--TEEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEE--eC--CcEEEEEECCCcCccccccHHHHHHHHHH
Confidence 457999999999999999999998877777778888765444443 23 4789999999998875 2334444
Q ss_pred c--ccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHH-HcCCCCCCCCCCCCEEEEec
Q 004746 564 R--VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELS-SIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 564 ~--~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~-elgl~~e~~gg~ipiVeVSA 639 (732)
. .+|++++|+|+++ ......++..+...+.|+|+|+||+|+.... .......+. .. .++++++||
T Consensus 82 ~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~Sa 150 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKIL---------GVKVVPLSA 150 (188)
T ss_dssp HHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHH---------TSCEEECBG
T ss_pred hccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHh---------CCCeEEEEe
Confidence 3 5999999999985 2334455566666789999999999984210 001112222 22 257999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 004746 640 LKGEKVDDLLETIMLVA 656 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~la 656 (732)
++|.||+++|++|....
T Consensus 151 ~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 151 AKKMGIEELKKAISIAV 167 (188)
T ss_dssp GGTBSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 142
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.81 E-value=3e-19 Score=187.42 Aligned_cols=156 Identities=19% Similarity=0.295 Sum_probs=116.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcc---------ccchhh
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE---------AFGAMR 559 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE---------~f~~~r 559 (732)
+..+|+|+|++|||||||+|+|++..+. .+..+++|++.....+ ......++||||||+. .|....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~----~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIH----TEGAYQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEE----EETTEEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEE----EECCeeEEEEECcCCCccchhhHHHHHHHHH
Confidence 4568999999999999999999988765 4566777775422222 2245689999999987 233444
Q ss_pred cccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 560 ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 560 ~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
..++..+|++++|+|+++ +...+..++..+...+.|+|+++||+|+.. ....+...+..+.- .++ ...++++||
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~---~~~-~~~~i~iSA 156 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ-EKADLLPHLQFLAS---QMN-FLDIVPISA 156 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC-CHHHHHHHHHHHHT---TSC-CSEEEECCT
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc-cHHHHHHHHHHHHH---hcC-cCceEEEEC
Confidence 567799999999999988 888888788887777899999999999965 23333333332210 111 136999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 004746 640 LKGEKVDDLLETIMLV 655 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~l 655 (732)
++|.|+++|++.|...
T Consensus 157 ~~g~~v~~l~~~i~~~ 172 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKH 172 (301)
T ss_dssp TTTTTHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998853
No 143
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.81 E-value=2.4e-21 Score=187.46 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=107.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|++|+|||||+++|++..+.....++++.+.. ...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK--IRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEE--EEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEE--EEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 34579999999999999999999988776655555554443 3344456777889999999999999999999999999
Q ss_pred EEEEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCC---hHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 569 AVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 569 VILVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~a~---~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+|||||+++....+. ..++..+.. .++|+|+|+||+|+.... .+......... .++++++||++
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~vSA~~ 179 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL---------GIPFLETSAKN 179 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT---------TCCBCCCCC--
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHc---------CCeEEEEECCC
Confidence 999999998543322 233333333 278999999999985421 11121222222 35799999999
Q ss_pred CCCHHHHHHHHHH
Q 004746 642 GEKVDDLLETIML 654 (732)
Q Consensus 642 GeGIdeLfe~Ii~ 654 (732)
|.||+++|++|..
T Consensus 180 g~gv~~l~~~l~~ 192 (199)
T 3l0i_B 180 ATNVEQSFMTMAA 192 (199)
T ss_dssp -HHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999875
No 144
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=1.1e-19 Score=199.65 Aligned_cols=153 Identities=24% Similarity=0.303 Sum_probs=106.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcccc---------chhhcc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF---------GAMRAR 561 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f---------~~~r~r 561 (732)
++|+|+|++|||||||+|+|++.+.. +...+|+|++.....+.+ ++ ..+.||||||++.+ ......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~--~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW--YG--KTFKLVDTCGVFDNPQDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE--TT--EEEEEEECTTTTSSGGGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE--CC--eEEEEEECCCccccccchHHHHHHHHHHH
Confidence 68999999999999999999987754 678889999876555543 33 47899999997642 233445
Q ss_pred cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 562 ~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
+++.+|++|+|+|+.++....+.++...++..++|+|+|+||+|+..........++..+++ .+++++||++
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~--------~~~~~iSA~~ 149 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGF--------GEPIPVSAEH 149 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSS--------CSCEECBTTT
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCC--------CCEEEEeccC
Confidence 67999999999999998888777777777777999999999999842100111022222221 2589999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|.|+++|+++|....
T Consensus 150 g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 150 NINLDTMLETIIKKL 164 (439)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999998654
No 145
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.81 E-value=1.5e-19 Score=185.69 Aligned_cols=149 Identities=19% Similarity=0.215 Sum_probs=112.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch----------hhcc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA----------MRAR 561 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~----------~r~r 561 (732)
++|+++|++|+|||||+|+|++.+..++..+++|.+.....+.+ + +..+.||||||+..+.. +...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~--~--~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLL--G--EHLIEITDLPGVYSLVANAEGISQDEQIAAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEE--T--TEEEEEEECCCCSSCC------CHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEE--C--CeEEEEEeCCCcccccccccCCCHHHHHHHH
Confidence 58999999999999999999998888888899997765444443 3 34899999999987764 3344
Q ss_pred cc--cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHH-cCCCCCCCCCCCCEEEE
Q 004746 562 GA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSS-IGLMPEDWGGDIPMVQI 637 (732)
Q Consensus 562 ~~--~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~e-lgl~~e~~gg~ipiVeV 637 (732)
++ ..+|++|+|+|+++ ......+..++...++|+|+|+||+|+.... .......+.. + .++++++
T Consensus 78 ~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l---------g~~vi~~ 146 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLL---------GCSVIPI 146 (256)
T ss_dssp HHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHH---------CSCEEEC
T ss_pred HHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHc---------CCCEEEE
Confidence 55 78999999999997 3444556667777899999999999974211 1011112221 2 2689999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 004746 638 SALKGEKVDDLLETIMLV 655 (732)
Q Consensus 638 SAKtGeGIdeLfe~Ii~l 655 (732)
||++|.||++|+++|...
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999754
No 146
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.81 E-value=1.9e-19 Score=185.06 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=113.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh------hcccc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM------RARGA 563 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~------r~r~~ 563 (732)
+.++|+++|++|+|||||+|+|++..+..+..+|+|.+.....+. ..++.+.||||||+..|... ...++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~----~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFT----YKGYTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEE----ETTEEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEE----ECCeEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 347899999999999999999999888778888988775444433 23478999999999887642 23344
Q ss_pred --cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC---CChHHHHHHHHHcCCCCCCCCCCCCEEEEe
Q 004746 564 --RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (732)
Q Consensus 564 --~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~---a~~erv~~eL~elgl~~e~~gg~ipiVeVS 638 (732)
..+|++|+|+|+++. .....++.++...++|+|+|+||+|+.. ... ........+ .++++++|
T Consensus 80 ~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~l---------g~~vi~~S 147 (258)
T 3a1s_A 80 LKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKI-DRYELQKHL---------GIPVVFTS 147 (258)
T ss_dssp HHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCB-CHHHHHHHH---------CSCEEECC
T ss_pred hhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHH-HHHHHHHHc---------CCCEEEEE
Confidence 589999999999873 3344566667777999999999999732 111 111111222 26899999
Q ss_pred cCCCCCHHHHHHHHHHHHh
Q 004746 639 ALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 639 AKtGeGIdeLfe~Ii~lae 657 (732)
|++|.||++|+++|.....
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999987653
No 147
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.3e-19 Score=179.17 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=108.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc-cchhhcccccccC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-FGAMRARGARVTD 567 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~-f~~~r~r~~~~AD 567 (732)
..++|+|+|.+|||||||+++|.+.... ....+.++ ..++...+.+++..+.+.+|||+|++. +..++..+++.+|
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g--~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG--EDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CC--TTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccc--eeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 4579999999999999999999965432 22223233 334455555678888899999999876 4556667778999
Q ss_pred eEEEEEEecCCCChhhH-HHHHHHH----hcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 568 IAVIVVAADDGIRPQTN-EAIAHAK----AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 568 iVILVVDasdgi~~qt~-EiL~~ak----~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
++|+|||+++....+.. +++..+. ..++|+|+|+||+|+... ..++........ +++|++|||
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~---------~~~~~e~SA 184 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF---------DCKFIETSA 184 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH---------TCEEEECBT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHc---------CCEEEEEeC
Confidence 99999999874322222 2333332 237899999999999531 222222211222 257999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 004746 640 LKGEKVDDLLETIMLVA 656 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~la 656 (732)
++|+||+++|++|....
T Consensus 185 k~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 185 AVQHNVKELFEGIVRQV 201 (211)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998754
No 148
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=1.1e-19 Score=200.40 Aligned_cols=161 Identities=20% Similarity=0.351 Sum_probs=122.5
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCC-ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCC----------ccccc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----------HEAFG 556 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k-~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG----------hE~f~ 556 (732)
....++|+++|++|+|||||+|+|++.. ...+..+++|++.....+.. ++ ..++|||||| ++.|.
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~--~~--~~~~l~DT~G~~~~~~~~~~~e~~~ 267 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY--NQ--QEFVIVDTAGMRKKGKVYETTEKYS 267 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE--TT--EEEEETTGGGTTTBTTBCCCCSHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE--CC--ceEEEEECCCCCcCcccchHHHHHH
Confidence 3567899999999999999999999765 55778889998865544443 33 4799999999 67787
Q ss_pred hhhcc-cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCCh---HHHHHHHHHcCCCCCCCCCCC
Q 004746 557 AMRAR-GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP---ERVMQELSSIGLMPEDWGGDI 632 (732)
Q Consensus 557 ~~r~r-~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~---erv~~eL~elgl~~e~~gg~i 632 (732)
.++.. ++..+|++|+|+|+++++..++.+++..+...++|+|+|+||+|+..... ++..+.+...-. +...+
T Consensus 268 ~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~ 343 (456)
T 4dcu_A 268 VLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ----FLDYA 343 (456)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCG----GGTTS
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcc----cCCCC
Confidence 77664 66999999999999999999999999999888999999999999965432 334444433211 11236
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHH
Q 004746 633 PMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 633 piVeVSAKtGeGIdeLfe~Ii~la 656 (732)
++++|||++|.||++||++|....
T Consensus 344 ~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 344 PILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHH
T ss_pred CEEEEcCCCCcCHHHHHHHHHHHH
Confidence 899999999999999999998654
No 149
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.80 E-value=4e-19 Score=172.42 Aligned_cols=156 Identities=19% Similarity=0.220 Sum_probs=104.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc-cchhhcccccccC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-FGAMRARGARVTD 567 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~-f~~~r~r~~~~AD 567 (732)
..++|+|+|.+|||||||+++|.+.... ......++. .++...+.+++..+.+.+|||+|++. +..++..+++.+|
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGE--DTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCT--TEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccce--eEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 3479999999999999999999964332 222333333 34444555678778899999999776 4455666778899
Q ss_pred eEEEEEEecCCCChhhH-HHHHHHH----hcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEec
Q 004746 568 IAVIVVAADDGIRPQTN-EAIAHAK----AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (732)
Q Consensus 568 iVILVVDasdgi~~qt~-EiL~~ak----~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSA 639 (732)
++|+|||+++....+.. +++..+. ..++|+|+|+||+|+... ..+.. ..+... .+++|++|||
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~a~~--------~~~~~~e~SA 153 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAXAVV--------FDXKFIETSA 153 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHHHHH--------TTCEEEECBT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHHHHH--------hCCceEEecc
Confidence 99999999874332222 2222222 237899999999998531 11211 122111 1257999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 004746 640 LKGEKVDDLLETIMLVA 656 (732)
Q Consensus 640 KtGeGIdeLfe~Ii~la 656 (732)
++|.||+++|++|....
T Consensus 154 ~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 154 AVQHNVKELFEGIVRQV 170 (192)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 99999999999998654
No 150
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.80 E-value=9.9e-20 Score=188.24 Aligned_cols=151 Identities=17% Similarity=0.285 Sum_probs=112.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh----------h
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM----------R 559 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~----------r 559 (732)
+.++|+|+|++|+|||||+|+|++..+.++..+|+|.+.....+.+ .+..+.||||||+..|... .
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~----~~~~~~liDtpG~~~~~~~~~~~~~~e~i~ 77 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST----TDHQVTLVDLPGTYSLTTISSQTSLDEQIA 77 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC----SSCEEEEEECCCCSCSCC----CCHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe----CCCceEEEECcCCCccccccccCCHHHHHH
Confidence 3579999999999999999999998888888899988764444432 2357999999999887632 1
Q ss_pred cccc--cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHH-HcCCCCCCCCCCCCEE
Q 004746 560 ARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELS-SIGLMPEDWGGDIPMV 635 (732)
Q Consensus 560 ~r~~--~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~-elgl~~e~~gg~ipiV 635 (732)
..++ ..+|++|+|+|+++ ......++.++...++|+|+|+||+|+.... .......+. .+ .++++
T Consensus 78 ~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l---------g~~~i 146 (274)
T 3i8s_A 78 CHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARL---------GCPVI 146 (274)
T ss_dssp HHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHH---------TSCEE
T ss_pred HHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhc---------CCCEE
Confidence 1222 68999999999987 3444556667777799999999999974311 001112222 12 26899
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q 004746 636 QISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 636 eVSAKtGeGIdeLfe~Ii~l 655 (732)
++||++|.||++|+++|...
T Consensus 147 ~~SA~~g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRY 166 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTC
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 99999999999999998753
No 151
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.79 E-value=5.9e-19 Score=182.28 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=115.7
Q ss_pred cccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccc
Q 004746 486 KLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARV 565 (732)
Q Consensus 486 ~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ 565 (732)
......++|+|+|.+|+|||||+++|....+...+. +++.+ .+...+.+++..+.+.||||||++.|..++..++..
T Consensus 150 ~~~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~-~t~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 226 (332)
T 2wkq_A 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-PTVFD--NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ 226 (332)
T ss_dssp HHHTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCC-CCSEE--EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTT
T ss_pred hcccceeEEEEECCCCCChHHHHHHHHhCCCCcccC-Ccccc--eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccC
Confidence 345677899999999999999999999877654433 33333 233444567777888899999999999999999999
Q ss_pred cCeEEEEEEecCCCChhhH--HHHHHHHhc--CCCEEEEEeCCCCCCCC---------------hHHHHHHHHHcCCCCC
Q 004746 566 TDIAVIVVAADDGIRPQTN--EAIAHAKAA--GVPIVIAINKIDKDGAN---------------PERVMQELSSIGLMPE 626 (732)
Q Consensus 566 ADiVILVVDasdgi~~qt~--EiL~~ak~~--~vPIIVViNKiDL~~a~---------------~erv~~eL~elgl~~e 626 (732)
+|++|+|||+++....+.. .++..+... ++|+|+|+||+|+.... .+.........+
T Consensus 227 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 302 (332)
T 2wkq_A 227 TDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG---- 302 (332)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT----
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC----
Confidence 9999999999875433332 233333333 79999999999985321 111111222221
Q ss_pred CCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 627 DWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 627 ~~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
..++++|||++|.||+++|++|....
T Consensus 303 ----~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 303 ----AVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp ----CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----CcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 13799999999999999999998653
No 152
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.79 E-value=4.2e-19 Score=184.38 Aligned_cols=149 Identities=22% Similarity=0.261 Sum_probs=109.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccc------hhhccccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG------AMRARGAR 564 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~------~~r~r~~~ 564 (732)
.++|+++|++|+|||||+|+|.+....++..+|+|.+... . .+.. ++.+.||||||++.|. .+...++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~--~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~ 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKS--G--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEE--E--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEE--E--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHh
Confidence 4689999999999999999999887667777888876422 2 2344 5689999999998875 23344443
Q ss_pred --ccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC-ChHHHHHHHH-HcCCCCCCCCCCCCEEEEecC
Q 004746 565 --VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPERVMQELS-SIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 565 --~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a-~~erv~~eL~-elgl~~e~~gg~ipiVeVSAK 640 (732)
.+|++|+|+|+++. .....++.++...++|+|+|+||+|+... ........+. .+ +++++++||+
T Consensus 78 ~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l---------g~~vi~~SA~ 146 (272)
T 3b1v_A 78 SQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHL---------GVPVVATSAL 146 (272)
T ss_dssp TTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHH---------TSCEEECBTT
T ss_pred cCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHc---------CCCEEEEEcc
Confidence 69999999999862 33344555666679999999999997321 0000111222 12 2589999999
Q ss_pred CCCCHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLV 655 (732)
Q Consensus 641 tGeGIdeLfe~Ii~l 655 (732)
+|.||++||++|...
T Consensus 147 ~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 147 KQTGVDQVVKKAAHT 161 (272)
T ss_dssp TTBSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999864
No 153
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.67 E-value=4.8e-21 Score=185.68 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=111.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCe
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.+.++|+|+|.+|+|||||+++|++..+...+.+ ++.+ .+...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-TVFD--NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 4578999999999999999999997766533332 2222 223333456667788899999999999999999999999
Q ss_pred EEEEEEecCCCChhhH--HHHHHHHhc--CCCEEEEEeCCCCCCCCh-HHHHH-----HH--HHcCCCCCCCCCCCCEEE
Q 004746 569 AVIVVAADDGIRPQTN--EAIAHAKAA--GVPIVIAINKIDKDGANP-ERVMQ-----EL--SSIGLMPEDWGGDIPMVQ 636 (732)
Q Consensus 569 VILVVDasdgi~~qt~--EiL~~ak~~--~vPIIVViNKiDL~~a~~-erv~~-----eL--~elgl~~e~~gg~ipiVe 636 (732)
+|||||+++....+.. .++..+... ++|+|+|+||+|+..... ..... .. .........+ +..++++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~ 183 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKYLE 183 (204)
Confidence 9999999875433332 233333333 789999999999964221 00000 00 0000001111 1237999
Q ss_pred EecCCCCCHHHHHHHHHHH
Q 004746 637 ISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 637 VSAKtGeGIdeLfe~Ii~l 655 (732)
|||++|.||+++|++|...
T Consensus 184 vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIRA 202 (204)
Confidence 9999999999999998753
No 154
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.79 E-value=2.1e-19 Score=172.03 Aligned_cols=159 Identities=19% Similarity=0.235 Sum_probs=102.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCC--ccccccCCceeeeeeEEEEeec---CCcceeEEEEeCCCccccchhhcccccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTK--VAAAEAGGITQGIGAYKVQVPV---DGKLQPCVFLDTPGHEAFGAMRARGARV 565 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k--~~vse~~GtTrdI~~y~v~i~i---dgk~i~ItLIDTPGhE~f~~~r~r~~~~ 565 (732)
.++|+|+|.+|+|||||+++|.+.. +...+.+ |.++.++...+.+ ++..+.+.||||+|++.|..++..++..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~--t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 79 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSA--TVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQ 79 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcce--eccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccC
Confidence 3689999999999999999999752 2222223 4444444443322 2356789999999999998888888899
Q ss_pred cCeEEEEEEecCCC-C-hhhHHHHHHHHh--cCCCEEEEEeCCCCCCCChH-HH-HHHHHHcCCCCCCCCCCCC----EE
Q 004746 566 TDIAVIVVAADDGI-R-PQTNEAIAHAKA--AGVPIVIAINKIDKDGANPE-RV-MQELSSIGLMPEDWGGDIP----MV 635 (732)
Q Consensus 566 ADiVILVVDasdgi-~-~qt~EiL~~ak~--~~vPIIVViNKiDL~~a~~e-rv-~~eL~elgl~~e~~gg~ip----iV 635 (732)
+|++++|+|++++. . .....++..+.. .+.|+|+|+||+|+...... .. ......+ . ..+ .++ ++
T Consensus 80 ~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~-~~~--~~~~~~~~~ 154 (184)
T 2zej_A 80 RALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKEL--L-NKR--GFPAIRDYH 154 (184)
T ss_dssp SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHT--T-TCT--TSCEEEEEE
T ss_pred CcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHH--H-Hhc--CCcchhheE
Confidence 99999999998752 1 122233333332 37899999999998642111 01 1111121 1 111 234 89
Q ss_pred EEecCCCC-CHHHHHHHHHHHH
Q 004746 636 QISALKGE-KVDDLLETIMLVA 656 (732)
Q Consensus 636 eVSAKtGe-GIdeLfe~Ii~la 656 (732)
++||++|. |+++|++.|....
T Consensus 155 ~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 155 FVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp ECCTTSCCHHHHHHHHHHHHHH
T ss_pred EEecccCchhHHHHHHHHHHHH
Confidence 99999997 9999999998643
No 155
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=3.7e-19 Score=197.11 Aligned_cols=159 Identities=18% Similarity=0.143 Sum_probs=114.1
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccccc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~A 566 (732)
+..+.++|+|+|.+|+|||||+++|.+..+.. .. .|.++....+. ..++.+.||||||++.|..++..++..+
T Consensus 318 ~~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~--~T~~~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a 390 (497)
T 3lvq_E 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TI--PTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGT 390 (497)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CC--CCSSEEEEEEE----SSSCEEEEEEECCCGGGSGGGGGGGTTC
T ss_pred ccccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cC--CccceeEEEEE----eCCEEEEEEECCCcHHHHHHHHHHhccC
Confidence 34556899999999999999999999877542 22 36555444433 3457899999999999999999999999
Q ss_pred CeEEEEEEecCCCChhhH-HHHHHHH----hcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 567 DIAVIVVAADDGIRPQTN-EAIAHAK----AAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 567 DiVILVVDasdgi~~qt~-EiL~~ak----~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
|++|+|||+++....+.. +++..+. ..++|+|+|+||+|+..... ..+...+ ...... ...+++++|||+
T Consensus 391 d~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~SA~ 466 (497)
T 3lvq_E 391 QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL-GLTRIR---DRNWYVQPSCAT 466 (497)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHT-TCTTCC---SSCEEEEECBTT
T ss_pred CEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHh-chhhhh---cCCeEEEEEECC
Confidence 999999999975433222 2222221 24789999999999976433 3332222 111111 124579999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLVA 656 (732)
Q Consensus 641 tGeGIdeLfe~Ii~la 656 (732)
+|+||+++|++|....
T Consensus 467 ~g~gi~~l~~~l~~~~ 482 (497)
T 3lvq_E 467 SGDGLYEGLTWLTSNY 482 (497)
T ss_dssp TTBTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 156
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.79 E-value=9.9e-19 Score=179.39 Aligned_cols=149 Identities=19% Similarity=0.251 Sum_probs=113.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch------hhcccc-
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA------MRARGA- 563 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~------~r~r~~- 563 (732)
.++|+|+|++|+|||||+|+|++..+..+..+++|.+.....+.+ .+..+.||||||+..|.. ....++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY----REKEFLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE----TTEEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE----CCceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence 578999999999999999999998888888888887764444432 335799999999988765 333444
Q ss_pred -cccCeEEEEEEecCCCChhhHHHHHHHHhcC-CCEEEEEeCCCCCC-----CChHHHHHHHHHcCCCCCCCCCCCCEEE
Q 004746 564 -RVTDIAVIVVAADDGIRPQTNEAIAHAKAAG-VPIVIAINKIDKDG-----ANPERVMQELSSIGLMPEDWGGDIPMVQ 636 (732)
Q Consensus 564 -~~ADiVILVVDasdgi~~qt~EiL~~ak~~~-vPIIVViNKiDL~~-----a~~erv~~eL~elgl~~e~~gg~ipiVe 636 (732)
..+|++|+|+|+++. .....++.++...+ +|+++|+||+|+.. .+...+.+ .+ .+++++
T Consensus 79 ~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---~l---------g~~~~~ 144 (271)
T 3k53_A 79 DGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRK---EL---------GVPVIP 144 (271)
T ss_dssp TTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHH---HH---------SSCEEE
T ss_pred ccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHH---Hc---------CCcEEE
Confidence 679999999999974 34455555666667 99999999999632 12122221 22 268999
Q ss_pred EecCCCCCHHHHHHHHHHHHh
Q 004746 637 ISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 637 VSAKtGeGIdeLfe~Ii~lae 657 (732)
+||++|.|+++++++|.....
T Consensus 145 ~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 145 TNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp CBGGGTBTHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHh
Confidence 999999999999999987653
No 157
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=3.9e-19 Score=195.12 Aligned_cols=151 Identities=20% Similarity=0.310 Sum_probs=103.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcc--------ccchhhccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE--------AFGAMRARG 562 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE--------~f~~~r~r~ 562 (732)
++|+|+|++|||||||+|+|++.++. +...+|+|++..... +...+..+.||||||++ .+...+..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~----~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 79 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS----AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 79 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEE----CTTCSSCCEEEC---------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEE----EEECCceEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 78999999999999999999987654 567889998864333 33445689999999985 455566677
Q ss_pred ccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 563 ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 563 ~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
+..+|++|+|+|+.++....+.++...++..++|+|+|+||+|+..... .. ..+. ..+ ..+++++||++|
T Consensus 80 ~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~-----~~--~~~~--~lg-~~~~~~iSA~~g 149 (436)
T 2hjg_A 80 MDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA-----NI--YDFY--SLG-FGEPYPISGTHG 149 (436)
T ss_dssp HHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC----------CC--CSSG--GGS-SCCCEECBTTTT
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh-----hH--HHHH--HcC-CCCeEEEeCcCC
Confidence 8999999999999999988888888888888999999999999853210 00 0111 111 126899999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.|+++|+++|....
T Consensus 150 ~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 150 LGLGDLLDAVAEHF 163 (436)
T ss_dssp BTHHHHHHHHHHTG
T ss_pred CChHHHHHHHHHhc
Confidence 99999999998644
No 158
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.76 E-value=2.5e-19 Score=197.53 Aligned_cols=154 Identities=21% Similarity=0.358 Sum_probs=114.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhh-------cc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMR-------AR 561 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r-------~r 561 (732)
..++|+|+|+.|||||||+|+|++..+. ....+++|.+.....+.+ .+. ..++||||||+++|..+. ..
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~--~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMEL--HPI-GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEE--TTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEE--CCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 4579999999999999999999988764 567788888876666654 222 379999999999887653 23
Q ss_pred cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCC
Q 004746 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (732)
Q Consensus 562 ~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKt 641 (732)
++..+|++|||+|+ +...++.+++..+...++|+|+|+||+|+......+..+++.+ .+ +++++++||++
T Consensus 110 ~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~------~~--g~~v~~vSAkt 179 (423)
T 3qq5_A 110 VFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYES------RY--EAKVLLVSALQ 179 (423)
T ss_dssp HHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSC------CT--TCCCCCCSSCC
T ss_pred HHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHH------Hc--CCCEEEEECCC
Confidence 66889999999998 6778888899999888999999999999977655433333221 11 36899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004746 642 GEKVDDLLETIMLVA 656 (732)
Q Consensus 642 GeGIdeLfe~Ii~la 656 (732)
|.|++++|++|....
T Consensus 180 g~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 180 KKGFDDIGKTISEIL 194 (423)
T ss_dssp TTSTTTHHHHHHHHS
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999998765
No 159
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.76 E-value=8.7e-19 Score=178.76 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=103.0
Q ss_pred cCCCCEEEEEeCC---------CCCHHHHHHHHHc---CCccccccCCc-eeeeeeEEEE------------eecCCcce
Q 004746 488 EDRPPVLTIMGHV---------DHGKTTLLDHIRK---TKVAAAEAGGI-TQGIGAYKVQ------------VPVDGKLQ 542 (732)
Q Consensus 488 ~~r~~kVaIVG~~---------nvGKSSLLnrLl~---~k~~vse~~Gt-TrdI~~y~v~------------i~idgk~i 542 (732)
..+.++|+|+|.+ |||||||+++|++ ..+...+.+.+ +.++....+. ..+++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3456899999999 9999999999998 44444433322 2221111110 11346678
Q ss_pred eEEEEe-----------------------CCCccccchhhccccc---------------------ccCeEEEEEEecCC
Q 004746 543 PCVFLD-----------------------TPGHEAFGAMRARGAR---------------------VTDIAVIVVAADDG 578 (732)
Q Consensus 543 ~ItLID-----------------------TPGhE~f~~~r~r~~~---------------------~ADiVILVVDasdg 578 (732)
.+.||| ++|++.|..++..++. .+|++|||||+++.
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 7777878777777776 79999999999985
Q ss_pred --CChhh-HHHHHHH----HhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHH
Q 004746 579 --IRPQT-NEAIAHA----KAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLET 651 (732)
Q Consensus 579 --i~~qt-~EiL~~a----k~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~ 651 (732)
...+. ..++..+ ...++|+|+|+||+|+...........+.... ..++++++||++|.||+++|++
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-------~~~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSK-------KNLQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTS-------SSCCEEECBTTTTBSHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhc-------CCCeEEEEECCCCCCHHHHHHH
Confidence 33222 2222222 23579999999999985321111112222110 1368999999999999999999
Q ss_pred HHHHH
Q 004746 652 IMLVA 656 (732)
Q Consensus 652 Ii~la 656 (732)
|....
T Consensus 249 l~~~l 253 (255)
T 3c5h_A 249 LVQLI 253 (255)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98643
No 160
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.76 E-value=3.4e-18 Score=179.46 Aligned_cols=157 Identities=16% Similarity=0.204 Sum_probs=112.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCC-ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcccc-----chhhccccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF-----GAMRARGAR 564 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k-~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f-----~~~r~r~~~ 564 (732)
.++|+++|++|+|||||+++|++.. ...+...++|+++....+.+ ++ .+.+.||||||++.| ..++..+++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~--~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF--LG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE--TT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe--CC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 4689999999999999999999764 33455778898887766554 33 678999999999988 567777789
Q ss_pred ccCeEEEEEEecCCCChhhHH----HHHHHHh--cCCCEEEEEeCCCCCCCChHH-----HHHHHHHcCCCCCCCCC-CC
Q 004746 565 VTDIAVIVVAADDGIRPQTNE----AIAHAKA--AGVPIVIAINKIDKDGANPER-----VMQELSSIGLMPEDWGG-DI 632 (732)
Q Consensus 565 ~ADiVILVVDasdgi~~qt~E----iL~~ak~--~~vPIIVViNKiDL~~a~~er-----v~~eL~elgl~~e~~gg-~i 632 (732)
.+|++|+|||+++....+..+ ++..+.. .++|+++|+||+|+...+... ....+..+. ..++. .+
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~---~~~g~~~~ 156 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETS---SEFGFPNL 156 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH---HTTTCCSC
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHH---HHcCCCCe
Confidence 999999999999865544432 2233322 379999999999996521111 111111110 01111 36
Q ss_pred CEEEEecCCCCCHHHHHHHHHH
Q 004746 633 PMVQISALKGEKVDDLLETIML 654 (732)
Q Consensus 633 piVeVSAKtGeGIdeLfe~Ii~ 654 (732)
+++++||++ .|+.++|..++.
T Consensus 157 ~~~~tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 157 IGFPTSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp EEEECCTTS-SHHHHHHHHHHH
T ss_pred EEEEeeecC-ChHHHHHHHHHH
Confidence 899999999 899999888764
No 161
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.75 E-value=1.2e-17 Score=161.69 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=111.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeE
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiV 569 (732)
..++|+|+|++|+|||||+++|.+..+.....+.++. .++...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~--~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV--EFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSC--EEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccce--eEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 3578999999999999999999988766544443333 33344455677778899999999999888777788899999
Q ss_pred EEEEEecCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCC
Q 004746 570 VIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (732)
Q Consensus 570 ILVVDasdgi~~qt-~EiL~~ak~---~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtG 642 (732)
|+|+|+++....+. ..++..+.. .+.|+++|+||+|+... ..+......... .+.++++||+++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~---------~~~~~d~Sal~~ 152 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN---------NLSFIETSALDS 152 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCEEEECCTTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHc---------CCeEEEEeCCCC
Confidence 99999987433222 223333322 46789999999999542 223322222222 357899999999
Q ss_pred CCHHHHHHHHHHHH
Q 004746 643 EKVDDLLETIMLVA 656 (732)
Q Consensus 643 eGIdeLfe~Ii~la 656 (732)
.|+++++++|....
T Consensus 153 ~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 153 TNVEEAFKNILTEI 166 (199)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
No 162
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=9.3e-18 Score=184.33 Aligned_cols=161 Identities=24% Similarity=0.294 Sum_probs=112.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch----------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA---------- 557 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~---------- 557 (732)
...++|+|+|++|+|||||+|+|++... .++..+|+|++.....+. +++ ..+.+|||||+..+..
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~--~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVF--IDG--RKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEE--ETT--EEEEESSCSCC-----------CCSC
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEE--ECC--EEEEEEECCCCccccccchhhHHHHH
Confidence 3568999999999999999999998764 477888999876544444 344 3689999999743322
Q ss_pred -hh-cccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC---hHHHHHHHHHcCCCCCCCCCCC
Q 004746 558 -MR-ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDI 632 (732)
Q Consensus 558 -~r-~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~---~erv~~eL~elgl~~e~~gg~i 632 (732)
.+ ..++..+|++++|+|++++...+...+...+...++|+|+|+||+|+.... .+++...+... +.. ....
T Consensus 254 ~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~---~~~~ 329 (439)
T 1mky_A 254 NYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREK-LYF---IDYS 329 (439)
T ss_dssp CHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHH-CGG---GTTS
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHH-hcc---CCCC
Confidence 11 134578999999999999888887777777777899999999999986532 23333333221 110 1236
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHh
Q 004746 633 PMVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 633 piVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
+++++||++|.||++||+.|....+
T Consensus 330 ~~~~~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 330 PLIFTSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999986543
No 163
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.74 E-value=2.6e-18 Score=189.63 Aligned_cols=152 Identities=20% Similarity=0.306 Sum_probs=108.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCC--------ccccchhhc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG--------HEAFGAMRA 560 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPG--------hE~f~~~r~ 560 (732)
..++|+|+|++|||||||+|+|++.++. +...+|+|++..... ....+..+.|||||| ++.|.....
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~----~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS----AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEE----CTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEE----EEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 4579999999999999999999987765 567788888753332 344566899999999 666777777
Q ss_pred ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecC
Q 004746 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAK 640 (732)
.++..+|++|||+|+.+++...+.+++..++..++|+|+|+||+|+.... ....++..++ ...++++||+
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e~~~lg--------~~~~~~iSA~ 167 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYDFYSLG--------FGEPYPISGT 167 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CCSGGGS--------SSSEEECCTT
T ss_pred hhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHHHHHcC--------CCceEEeecc
Confidence 78899999999999999999999999898888899999999999985321 0000111111 1257899999
Q ss_pred CCCCHHHHHHHHHHH
Q 004746 641 KGEKVDDLLETIMLV 655 (732)
Q Consensus 641 tGeGIdeLfe~Ii~l 655 (732)
+|.|+++|++++...
T Consensus 168 ~g~gv~~L~~~i~~~ 182 (456)
T 4dcu_A 168 HGLGLGDLLDAVAEH 182 (456)
T ss_dssp TCTTHHHHHHHHHTT
T ss_pred cccchHHHHHHHHhh
Confidence 999999999999754
No 164
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.74 E-value=4.2e-18 Score=172.46 Aligned_cols=161 Identities=14% Similarity=0.127 Sum_probs=108.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCC-ceeeeeeEEEEeecCCcceeEEEEeCCCccccchhh-------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGG-ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMR------- 559 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~G-tTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r------- 559 (732)
.+.++|+|+|++|+|||||+|+|++... .....+. +|++.....+. + .+..+.||||||+..+....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~--~--~~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGS--W--GNREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEE--E--TTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEE--e--CCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 4567999999999999999999998773 3333333 66654333333 2 34689999999987664322
Q ss_pred ----cccccccCeEEEEEEecCCCChhhHHHHHHHHhc-----CCCEEEEEe-CCCCCCCChHHHH---------HHHHH
Q 004746 560 ----ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA-----GVPIVIAIN-KIDKDGANPERVM---------QELSS 620 (732)
Q Consensus 560 ----~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~-----~vPIIVViN-KiDL~~a~~erv~---------~eL~e 620 (732)
..++..+|++|+|+|++. +..+...++..+... +.|+|+++| |+|+......... ..+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHH
Confidence 125688999999999985 666666666665543 567777777 9999765443321 12333
Q ss_pred cCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHhh
Q 004746 621 IGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAEL 658 (732)
Q Consensus 621 lgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael 658 (732)
.+.....| ..+++||++|.|+++||++|......
T Consensus 175 ~~~~~~~~----~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 175 CGGRICAF----NNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTTCEEEC----CTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEe----cCcccccccHHHHHHHHHHHHHHHHh
Confidence 22110001 11889999999999999999876543
No 165
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.72 E-value=8.6e-18 Score=188.79 Aligned_cols=157 Identities=17% Similarity=0.255 Sum_probs=105.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEE--------eecCCcceeEEEEeCCCccccchhh
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQ--------VPVDGKLQPCVFLDTPGHEAFGAMR 559 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~--------i~idgk~i~ItLIDTPGhE~f~~~r 559 (732)
..+.++|+++|.+|||||||+++|.+..+.....+ |.++.++... +..++..+.+.||||||++.|..+.
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~--t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~ 115 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQ--THGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH 115 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH
Confidence 44568999999999999999999998876543333 3333333321 1223456889999999999999888
Q ss_pred cccccccCeEEEEEEecCCCChhhHHHHHHHHhc--CCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCE
Q 004746 560 ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA--GVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPM 634 (732)
Q Consensus 560 ~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~--~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipi 634 (732)
..+++.+|++|+|+|+++. .....++..+... +.|+|+|+||+|+... ..+.....+... .+++
T Consensus 116 ~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~ 184 (535)
T 3dpu_A 116 QFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAI---------ENRF 184 (535)
T ss_dssp HHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG---------TTCE
T ss_pred HHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhc---------CCce
Confidence 8888999999999999864 3444555566554 4999999999999643 222222222222 2579
Q ss_pred EEEecCCCCCHHHHHHHHHHHHh
Q 004746 635 VQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 635 VeVSAKtGeGIdeLfe~Ii~lae 657 (732)
++|||++|.||++|+++|.....
T Consensus 185 ~~vSA~~g~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 185 HRISCKNGDGVESIAKSLKSAVL 207 (535)
T ss_dssp EECCC-----CTTHHHHHHHHHT
T ss_pred EEEecCcccCHHHHHHHHHHHHh
Confidence 99999999999999999987553
No 166
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.70 E-value=1.3e-17 Score=171.11 Aligned_cols=165 Identities=15% Similarity=0.190 Sum_probs=107.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc------ccccCC----------------------ceee-------------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA------AAEAGG----------------------ITQG------------- 527 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~------vse~~G----------------------tTrd------------- 527 (732)
...++|+|+|.+|+|||||+|+|++..+. .+..++ +|.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999987763 233333 2211
Q ss_pred ------ee--eEEEEeecCCcceeEEEEeCCCcc-------------ccchhhcccccccCeEE-EEEEecCCCChhhH-
Q 004746 528 ------IG--AYKVQVPVDGKLQPCVFLDTPGHE-------------AFGAMRARGARVTDIAV-IVVAADDGIRPQTN- 584 (732)
Q Consensus 528 ------I~--~y~v~i~idgk~i~ItLIDTPGhE-------------~f~~~r~r~~~~ADiVI-LVVDasdgi~~qt~- 584 (732)
+. ...+.+. ......++||||||+. .+..+...++..+|.+| +|+|++++...+..
T Consensus 104 ~g~~~gi~~~~~~~~~~-~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVY-SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEE-ETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred cccCCCccccceEEEEe-CCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 00 0011111 0113589999999963 34455566777777666 79999987766664
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHh
Q 004746 585 EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 585 EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
.++..+...+.|+|+|+||+|+...... ....+.. .+.... .+..+++++||++|.|+++|+++|....+
T Consensus 183 ~~~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~-~~~~~~-~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 183 KIAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLEN-KLLPLR-RGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp HHHHHHCTTCSSEEEEEECGGGSCTTCC-CHHHHTT-CSSCCT-TCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEEEEccccCCCCch-HHHHHhC-CcCcCC-CCcEEEECCChhhccccccHHHHHHHHHH
Confidence 5666776678999999999998653221 1122221 111100 01247899999999999999999987443
No 167
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.69 E-value=2.3e-16 Score=168.64 Aligned_cols=156 Identities=22% Similarity=0.262 Sum_probs=109.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch---------hh
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA---------MR 559 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~---------~r 559 (732)
...++|+|+|.+|+|||||+|+|.+..+.....+++|.++....+.. .+..+.+|||||+..+.. ..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED----GYFRYQIIDTPGLLDRPISERNEIEKQAI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE----TTEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe----cCceEEEEeCCCccccchhhhhHHHHHHH
Confidence 56789999999999999999999988766666778887765544432 246799999999754321 11
Q ss_pred cccccccCeEEEEEEecCCC--Chhh-HHHHHHHHh-c-CCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCCCCCCCCC
Q 004746 560 ARGARVTDIAVIVVAADDGI--RPQT-NEAIAHAKA-A-GVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIP 633 (732)
Q Consensus 560 ~r~~~~ADiVILVVDasdgi--~~qt-~EiL~~ak~-~-~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e~~gg~ip 633 (732)
...+..+|++|+|+|+++.. .... .+++..+.. . ++|+|+|+||+|+.... .+.....+.. ..++
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---------~~~~ 311 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKE---------KGLN 311 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHH---------TTCC
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHh---------cCCC
Confidence 12335699999999988643 2222 334444433 2 79999999999996432 1122222222 1367
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHh
Q 004746 634 MVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 634 iVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
+++|||++|+||++|+++|.....
T Consensus 312 ~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 312 PIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp CEECBTTTTBTHHHHHHHHHHHHH
T ss_pred eEEEeCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999986543
No 168
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.69 E-value=2.2e-16 Score=152.78 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=111.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEE
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVI 570 (732)
.++|+|+|++|+|||||+++|.+..+.....+.++. .+....+.+++..+.+.||||+|++.|..++..+++.+|+++
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~--~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV--EFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSE--EEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccce--EEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 478999999999999999999988776554444433 334445556777778889999999999888888888999999
Q ss_pred EEEEecCCCChhhH-HHHHHHH---hcCCCEEEEEeCCCCCCC---ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCC
Q 004746 571 IVVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (732)
Q Consensus 571 LVVDasdgi~~qt~-EiL~~ak---~~~vPIIVViNKiDL~~a---~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGe 643 (732)
+|+|.++....+.. .++..+. ..+.|+++++||+|+... ............ .+.++++||+++.
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~---------~~~~ld~Sald~~ 177 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN---------GLSFIETSALDST 177 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEECCTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEeCCCCC
Confidence 99998864322221 2333232 236789999999998542 222222222222 3578999999999
Q ss_pred CHHHHHHHHHHH
Q 004746 644 KVDDLLETIMLV 655 (732)
Q Consensus 644 GIdeLfe~Ii~l 655 (732)
|++++++.|...
T Consensus 178 ~v~~l~~~l~~~ 189 (191)
T 1oix_A 178 NVEAAFQTILTE 189 (191)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999998753
No 169
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.69 E-value=4.3e-17 Score=167.71 Aligned_cols=155 Identities=20% Similarity=0.246 Sum_probs=93.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccC------CceeeeeeEEEEeecCCcceeEEEEeCCCcccc-------ch
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAG------GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF-------GA 557 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~------GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f-------~~ 557 (732)
.++|+|+|++|+|||||+|+|+.........+ ..|.++..+...+..++..+.++||||||+.++ ..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 36899999999999999999987665443321 345555566666655666679999999997322 21
Q ss_pred hh-------cccc-------------cccCeEEEEEEecC-CCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC-ChHH--
Q 004746 558 MR-------ARGA-------------RVTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPER-- 613 (732)
Q Consensus 558 ~r-------~r~~-------------~~ADiVILVVDasd-gi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a-~~er-- 613 (732)
+. ..++ ..+|++|++++.+. ++...+.+++..+.. ++|+|+|+||+|+... ....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~ 166 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 166 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHH
Confidence 11 1111 23788999986654 788888888888877 8999999999998532 1111
Q ss_pred --HHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 614 --VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 614 --v~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
+.+.+... .++++++||++++|+++++++|...
T Consensus 167 ~~i~~~l~~~---------~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 167 KQIMKEIQEH---------KIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHHHT---------TCCCCCC-----------CHHHHHT
T ss_pred HHHHHHHHHc---------CCeEEcCCCCCChhHHHHHHHHhcC
Confidence 22222222 3568899999999999999998753
No 170
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.69 E-value=2.3e-17 Score=167.88 Aligned_cols=159 Identities=13% Similarity=0.137 Sum_probs=104.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcccccc--CCceeeeeeEEEEeecCCcceeEEEEeCCCc--------cccchh
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEA--GGITQGIGAYKVQVPVDGKLQPCVFLDTPGH--------EAFGAM 558 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~--~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh--------E~f~~~ 558 (732)
...++|+|+|++|+|||||+|+|++..+..... .++|++.....+. . .+..++||||||. +.+...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~--~--~~~~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRR--W--DKCHVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEE--E--TTEEEEEEECCSCSSTTHHHHSTTSHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEE--E--CCcEEEEEECCCCCCCCCCcHHHHHHH
Confidence 346799999999999999999999887654332 2466655444333 2 3468999999996 444444
Q ss_pred hcccc----cccCeEEEEEEecCCCChhhHHHHHHHHhc------CCCEEEEEeCCCCCCCChHHHHHH-----HHHcCC
Q 004746 559 RARGA----RVTDIAVIVVAADDGIRPQTNEAIAHAKAA------GVPIVIAINKIDKDGANPERVMQE-----LSSIGL 623 (732)
Q Consensus 559 r~r~~----~~ADiVILVVDasdgi~~qt~EiL~~ak~~------~vPIIVViNKiDL~~a~~erv~~e-----L~elgl 623 (732)
..+++ ..+|++|+|+|++. +...+..++..+... +.|+|+++||+|+.+.+.+.+... +..+
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l-- 171 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALREL-- 171 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHH--
T ss_pred HHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHH--
Confidence 44443 89999999999985 666666666666543 789999999999976554443321 1111
Q ss_pred CCCCCCCCCCEEEEecCC-----CCCHHHHHHHHHHHHh
Q 004746 624 MPEDWGGDIPMVQISALK-----GEKVDDLLETIMLVAE 657 (732)
Q Consensus 624 ~~e~~gg~ipiVeVSAKt-----GeGIdeLfe~Ii~lae 657 (732)
...++ ..++.+++.. +.|+++|++.|..+..
T Consensus 172 -~~~~g--~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 172 -VAECG--GRVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp -HHHTT--TCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHcC--CeEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 01112 2355555544 6899999999987654
No 171
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.68 E-value=3.1e-17 Score=176.02 Aligned_cols=155 Identities=21% Similarity=0.176 Sum_probs=108.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc----cchhhccc---c
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA----FGAMRARG---A 563 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~----f~~~r~r~---~ 563 (732)
.++|+|+|.+|||||||+++|+..+......+.+|.+.....+.+ ++ ...+.||||||+.. +..+...+ +
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~--~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i 234 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET--DD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHI 234 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEEC--SS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEe--CC-CceEEEecCCCCcccccccchhHHHHHHHH
Confidence 457999999999999999999987766667778888776655543 22 25799999999533 22233333 4
Q ss_pred cccCeEEEEEEecC---CCChh-hHHHHHHHHh-----cCCCEEEEEeCCCCCCCChHHHHHHHHH-cCCCCCCCCCCCC
Q 004746 564 RVTDIAVIVVAADD---GIRPQ-TNEAIAHAKA-----AGVPIVIAINKIDKDGANPERVMQELSS-IGLMPEDWGGDIP 633 (732)
Q Consensus 564 ~~ADiVILVVDasd---gi~~q-t~EiL~~ak~-----~~vPIIVViNKiDL~~a~~erv~~eL~e-lgl~~e~~gg~ip 633 (732)
..+|++|+|||+++ ....+ ...++..+.. .++|+|+|+||+|+... .+..+.+.. +. ..++
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e~~~~l~~~l~-------~~~~ 305 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AENLEAFKEKLT-------DDYP 305 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHHHHHHHHHCC-------SCCC
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HHHHHHHHHHhh-------cCCC
Confidence 56999999999986 22222 2233344443 37899999999999642 222233322 21 1157
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHh
Q 004746 634 MVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 634 iVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
+++|||++++||++|+++|.....
T Consensus 306 v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 306 VFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp BCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHHHh
Confidence 999999999999999999987653
No 172
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.67 E-value=1.9e-16 Score=169.60 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=105.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCccc-cccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch---hhcccccccCe
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKTKVAA-AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA---MRARGARVTDI 568 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~k~~v-se~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~---~r~r~~~~ADi 568 (732)
||+++|..|+|||||++++.+..... ....+.|.++.+..+ + ..+.+.||||||+++|.. ++..+++.+++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v----~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF----S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE----C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE----c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 58999999999999999887543321 122345666655443 2 347899999999999964 46778899999
Q ss_pred EEEEEEecCCCChhhHHH----HHHHH--hcCCCEEEEEeCCCCCCCCh----HHHHHHHHHcCCCCCCC-CCCCCEEEE
Q 004746 569 AVIVVAADDGIRPQTNEA----IAHAK--AAGVPIVIAINKIDKDGANP----ERVMQELSSIGLMPEDW-GGDIPMVQI 637 (732)
Q Consensus 569 VILVVDasdgi~~qt~Ei----L~~ak--~~~vPIIVViNKiDL~~a~~----erv~~eL~elgl~~e~~-gg~ipiVeV 637 (732)
+|+|||+++. .....+. +..+. ..++|+++++||+|+...+. .+....-....+..... +.++.|+++
T Consensus 76 ~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999987 3333332 33332 24789999999999965322 12222222222322211 135789999
Q ss_pred ecCCCCCHHHHHHHHHH
Q 004746 638 SALKGEKVDDLLETIML 654 (732)
Q Consensus 638 SAKtGeGIdeLfe~Ii~ 654 (732)
||++ .||.+.|..|+.
T Consensus 155 SAkd-~nV~eAFs~iv~ 170 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQ 170 (331)
T ss_dssp CSSS-SHHHHHHHHHHT
T ss_pred ccCC-CcHHHHHHHHHH
Confidence 9998 599999998874
No 173
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=4.8e-16 Score=151.67 Aligned_cols=112 Identities=22% Similarity=0.247 Sum_probs=80.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccc---cccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhccccc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA---AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGAR 564 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~v---se~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~ 564 (732)
..+.++|+|+|++|+|||||+++|.+..+.. ...+.++. +...+.+.||||||++.|..++..++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 77 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----------DYDGSGVTLVDFPGHVKLRYKLSDYLK 77 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-----------TGGGSSCEEEECCCCGGGTHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-----------EeeCceEEEEECCCcHHHHHHHHHHHH
Confidence 3457899999999999999999999876542 12222221 124568999999999999888887776
Q ss_pred c----cCeEEEEEEec-CCC-ChhhHHHHHHHH-------hcCCCEEEEEeCCCCCCCC
Q 004746 565 V----TDIAVIVVAAD-DGI-RPQTNEAIAHAK-------AAGVPIVIAINKIDKDGAN 610 (732)
Q Consensus 565 ~----ADiVILVVDas-dgi-~~qt~EiL~~ak-------~~~vPIIVViNKiDL~~a~ 610 (732)
. +|++|||||++ +.. .....+++..+. ..++|+|+|+||+|+....
T Consensus 78 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 78 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred hccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 6 89999999998 322 222222222221 1479999999999997643
No 174
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.66 E-value=3.7e-16 Score=168.88 Aligned_cols=157 Identities=21% Similarity=0.276 Sum_probs=100.4
Q ss_pred CCE-EEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc---------cccchhhc
Q 004746 491 PPV-LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH---------EAFGAMRA 560 (732)
Q Consensus 491 ~~k-VaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh---------E~f~~~r~ 560 (732)
+++ |+|+|.+|+|||||+|+|.+..+.....+++|++.....+.+ ++ ..+.||||||+ +.|...+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~--~g--~~v~l~DT~G~i~~lp~~lve~f~~tl- 252 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI--NN--RKIMLVDTVGFIRGIPPQIVDAFFVTL- 252 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE--TT--EEEEEEECCCBCSSCCGGGHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE--CC--EEEEEEeCCCchhcCCHHHHHHHHHHH-
Confidence 444 999999999999999999988776677788898876555554 44 57899999996 2232222
Q ss_pred ccccccCeEEEEEEecCCC--Chh-h---HHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHH----HHcCCCCCCCCC
Q 004746 561 RGARVTDIAVIVVAADDGI--RPQ-T---NEAIAHAKAAGVPIVIAINKIDKDGANPERVMQEL----SSIGLMPEDWGG 630 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi--~~q-t---~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL----~elgl~~e~~gg 630 (732)
..+..+|++++|+|+++.. ... . .+.+..+...+.|+|+|+||+|+...........+ ..+. ..
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~------~~ 326 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY------SP 326 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC------SC
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc------CC
Confidence 3568899999999998753 121 1 22233333347899999999998654422222222 2221 11
Q ss_pred CCCEEEEecCCCCCHHHHHHHHHHHHhh
Q 004746 631 DIPMVQISALKGEKVDDLLETIMLVAEL 658 (732)
Q Consensus 631 ~ipiVeVSAKtGeGIdeLfe~Ii~lael 658 (732)
..+++++||++|.|+++|+++|......
T Consensus 327 ~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 327 IFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 2468999999999999999999875543
No 175
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=152.31 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=98.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccC--CceeeeeeEEEEeecCCcceeEEEEeCCCcc-----------cc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAG--GITQGIGAYKVQVPVDGKLQPCVFLDTPGHE-----------AF 555 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~--GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE-----------~f 555 (732)
...++|+|+|++|+|||||+|+|++..+.....+ ++|.+...+.+. ++ +..+.||||||.. .+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~--~~--~~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSS--WK--ETELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEE--ET--TEEEEEEECCSCC-----CHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEE--eC--CceEEEEECCCccCCCCCHHHHHHHH
Confidence 3457999999999999999999998877655444 566555443333 33 3579999999943 34
Q ss_pred chhhcccccccCeEEEEEEecCCCChhhHHHHHHHH-----hcCCCEEEEEeCCCCCCC-ChH--------HHHHHHHHc
Q 004746 556 GAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAK-----AAGVPIVIAINKIDKDGA-NPE--------RVMQELSSI 621 (732)
Q Consensus 556 ~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak-----~~~vPIIVViNKiDL~~a-~~e--------rv~~eL~el 621 (732)
......++..+|++|+|+|+++ ......+++..+. ....|+|+|+||+|+... ..+ .+...+...
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 4444455678899999999974 3334444444432 235699999999998542 111 122222222
Q ss_pred CCCCCCCCCCCCEEEEecCCC-----CCHHHHHHHHHHHH
Q 004746 622 GLMPEDWGGDIPMVQISALKG-----EKVDDLLETIMLVA 656 (732)
Q Consensus 622 gl~~e~~gg~ipiVeVSAKtG-----eGIdeLfe~Ii~la 656 (732)
+ ..++.+++..+ .|+.+|++.|....
T Consensus 182 ~---------~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 182 G---------DRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp S---------SSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred C---------CEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 2 24677766644 68999999887654
No 176
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.63 E-value=6e-16 Score=160.32 Aligned_cols=162 Identities=13% Similarity=0.219 Sum_probs=101.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc------ccccC---Cceeee-------------------------------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA------AAEAG---GITQGI------------------------------- 528 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~------vse~~---GtTrdI------------------------------- 528 (732)
...++|+|+|++|+|||||+|+|++..+. .+..+ .++++.
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 45689999999999999999999987752 11222 111110
Q ss_pred -----------------eeEEEEeecCCcceeEEEEeCCCccc-------------cchhhcccccccCeEEEEEEe-cC
Q 004746 529 -----------------GAYKVQVPVDGKLQPCVFLDTPGHEA-------------FGAMRARGARVTDIAVIVVAA-DD 577 (732)
Q Consensus 529 -----------------~~y~v~i~idgk~i~ItLIDTPGhE~-------------f~~~r~r~~~~ADiVILVVDa-sd 577 (732)
....+.+. ......+.||||||+.. +..+...++..+|++|||+|+ +.
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIY-SPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEE-ETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHhcCCCCCccCccEEEEEe-cCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 00001111 12235799999999753 444555677899999999998 44
Q ss_pred CCChhh-HHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEE---ecCC---CCCHHHHHH
Q 004746 578 GIRPQT-NEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQI---SALK---GEKVDDLLE 650 (732)
Q Consensus 578 gi~~qt-~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeV---SAKt---GeGIdeLfe 650 (732)
++..+. ..++..+...+.|+|+|+||+|+...... ....+... +. .+ ...++++ ||.+ +.|++++++
T Consensus 181 ~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~-~~~~~~~~-~~--~~--~~~~~~v~~~sa~~~~~~~gv~~l~~ 254 (315)
T 1jwy_B 181 DLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD-AMEVLTGR-VI--PL--TLGFIGVINRSQEDIIAKKSIRESLK 254 (315)
T ss_dssp CSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC-CHHHHTTS-SS--CC--TTCEEECCCCCHHHHSSSCCHHHHHH
T ss_pred chhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH-HHHHHhCC-Cc--cC--CCCeEEEecCChhhhccCCCHHHHHH
Confidence 554344 46777777778999999999998653321 12222211 11 11 1345555 4555 789999999
Q ss_pred HHHHHHh
Q 004746 651 TIMLVAE 657 (732)
Q Consensus 651 ~Ii~lae 657 (732)
.+.....
T Consensus 255 ~~~~~~~ 261 (315)
T 1jwy_B 255 SEILYFK 261 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9876554
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=1.3e-15 Score=147.60 Aligned_cols=159 Identities=18% Similarity=0.251 Sum_probs=101.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCcc--ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc----------c
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVA--AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA----------F 555 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~--vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~----------f 555 (732)
...+.+|+|+|++|+|||||+++|.+..+. .....|+|.....+.+ ++ .+.||||||+.. |
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~----~~---~~~l~Dt~G~~~~~~~~~~~~~~ 95 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV----AD---GKRLVDLPGYGYAEVPEEMKRKW 95 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE----ET---TEEEEECCCCC------CCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe----cC---CEEEEECcCCcccccCHHHHHHH
Confidence 345678999999999999999999876532 2344566654433222 22 588999999743 2
Q ss_pred chhhcccc---cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCC
Q 004746 556 GAMRARGA---RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGD 631 (732)
Q Consensus 556 ~~~r~r~~---~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ 631 (732)
......++ ..+|++++|+|++++......++...+...++|+++|+||+|+..... .+....+...- ......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~---~~~~~~ 172 (210)
T 1pui_A 96 QRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV---LAFNGD 172 (210)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHH---GGGCSC
T ss_pred HHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHH---HhcCCC
Confidence 22222233 568999999999987766555566666677899999999999854211 11111111110 011123
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 632 IPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 632 ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
+.++++||+++.|+++++++|....
T Consensus 173 ~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 173 VQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CceEEEeecCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998654
No 178
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.3e-15 Score=145.29 Aligned_cols=110 Identities=22% Similarity=0.257 Sum_probs=75.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccc---cccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAA---AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARV 565 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~v---se~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ 565 (732)
.+.++|+|+|++|+|||||+++|.+..+.. ...++++.+ ...+.+.||||||++.|...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 114 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-----------YDGSGVTLVDFPGHVKLRYKLSDYLKT 114 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-----------CCCTTCSEEEETTCCBSSCCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-----------ecCCeEEEEECCCCchHHHHHHHHHHh
Confidence 567899999999999999999999876532 222222221 134679999999999988777776655
Q ss_pred ----cCeEEEEEEec-CCCC-hhhHHHHHHH----H---hcCCCEEEEEeCCCCCCC
Q 004746 566 ----TDIAVIVVAAD-DGIR-PQTNEAIAHA----K---AAGVPIVIAINKIDKDGA 609 (732)
Q Consensus 566 ----ADiVILVVDas-dgi~-~qt~EiL~~a----k---~~~vPIIVViNKiDL~~a 609 (732)
+|++|||||++ +... ....+++..+ . ..++|+++|+||+|+...
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999998 3211 1111222221 1 137999999999998653
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.56 E-value=8.9e-15 Score=170.10 Aligned_cols=170 Identities=15% Similarity=0.208 Sum_probs=109.6
Q ss_pred cccCCCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCc--------------eeee----------------------
Q 004746 486 KLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGI--------------TQGI---------------------- 528 (732)
Q Consensus 486 ~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~Gt--------------TrdI---------------------- 528 (732)
.+....++|+|+|++|+|||||+|+|++..+. ++..++| |+++
T Consensus 64 ~l~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~ 143 (695)
T 2j69_A 64 NLQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDP 143 (695)
T ss_dssp HHHHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCH
T ss_pred HhccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCH
Confidence 34567889999999999999999999987754 3444444 2211
Q ss_pred ---------------eeEEEEeecCCcc--eeEEEEeCCCccc---cchhhcccccccCeEEEEEEecCCCChhhHHHHH
Q 004746 529 ---------------GAYKVQVPVDGKL--QPCVFLDTPGHEA---FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIA 588 (732)
Q Consensus 529 ---------------~~y~v~i~idgk~--i~ItLIDTPGhE~---f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~ 588 (732)
.+..+.+.+.... ..++||||||+.. +......++..+|++|+|+|+++.......+.+.
T Consensus 144 ~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~ 223 (695)
T 2j69_A 144 AEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLE 223 (695)
T ss_dssp HHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH
T ss_pred HHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH
Confidence 0001111111110 3699999999654 3344456778899999999999888777776664
Q ss_pred -HHHhcCCCEEEEEeCCCCCCCC---hH----------HHHHHHHH-cC-CCC-CCC-CCCCCEEEEecC----------
Q 004746 589 -HAKAAGVPIVIAINKIDKDGAN---PE----------RVMQELSS-IG-LMP-EDW-GGDIPMVQISAL---------- 640 (732)
Q Consensus 589 -~ak~~~vPIIVViNKiDL~~a~---~e----------rv~~eL~e-lg-l~~-e~~-gg~ipiVeVSAK---------- 640 (732)
.+...+.|+++|+||+|+.... .+ .+...+.. +. +.. ..+ ....++|+|||+
T Consensus 224 ~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 224 NYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp HHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred HHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 4455688999999999985321 11 12111111 10 000 000 013479999999
Q ss_pred ----CCCCHHHHHHHHHHH
Q 004746 641 ----KGEKVDDLLETIMLV 655 (732)
Q Consensus 641 ----tGeGIdeLfe~Ii~l 655 (732)
+|.|+++|++.|...
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~ 322 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTF 322 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHH
Confidence 999999999988753
No 180
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.54 E-value=1.3e-15 Score=162.57 Aligned_cols=163 Identities=15% Similarity=0.159 Sum_probs=102.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc------ccccCCceeeee---------------------------------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA------AAEAGGITQGIG--------------------------------- 529 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~------vse~~GtTrdI~--------------------------------- 529 (732)
...++|+|+|.+|+|||||+|+|++..+. .+..++.++-+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34689999999999999999999987763 222333111100
Q ss_pred ----------eEEEEeecCCcceeEEEEeCCCcc-------------ccchhhcccccc-cCeEEEEEEecCCCChhhH-
Q 004746 530 ----------AYKVQVPVDGKLQPCVFLDTPGHE-------------AFGAMRARGARV-TDIAVIVVAADDGIRPQTN- 584 (732)
Q Consensus 530 ----------~y~v~i~idgk~i~ItLIDTPGhE-------------~f~~~r~r~~~~-ADiVILVVDasdgi~~qt~- 584 (732)
...+.+. ......++||||||.. .+..+...++.. .+++|+|+|++..+..+..
T Consensus 109 ~g~~~gi~~~~~~~~i~-~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVY-SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEE-ETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred cccCCCcccCceEEEEe-cCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 0011111 1113579999999953 344455556644 4566667787766655554
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 585 EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 585 EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
+++..+...+.|+|+|+||+|+...... ....+....+.. .. +..+++++||++|.|+++|+++|...
T Consensus 188 ~i~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~l-~~-~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 188 KVAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPL-RR-GYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp HHHHHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSSCC-TT-CEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred HHHHHhCcCCCceEEEeccccccCcchh-HHHHHhCCcccc-cC-CceEEEeCCcccccccccHHHHHHHH
Confidence 4666666678999999999998643221 112222111111 11 12467899999999999999999763
No 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.54 E-value=2.3e-14 Score=146.49 Aligned_cols=115 Identities=11% Similarity=0.115 Sum_probs=82.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccc----
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGA---- 563 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~---- 563 (732)
.+.++|+|+|++|+|||||+|+|++..+. .....++|.+...+.+. + .+..++||||||+++|..+...++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~--~~~~l~liDTpG~~~~~~~~~~~~~~i~ 109 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRT--M--GGFTINIIDTPGLVEAGYVNHQALELIK 109 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEE--E--TTEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEE--E--CCeeEEEEECCCCCCcccchHHHHHHHH
Confidence 35689999999999999999999987753 45556666654433333 2 345899999999988865544333
Q ss_pred -----cccCeEEEEEEecC-CCChhhHHHHHHHHhc-----CCCEEEEEeCCCCC
Q 004746 564 -----RVTDIAVIVVAADD-GIRPQTNEAIAHAKAA-----GVPIVIAINKIDKD 607 (732)
Q Consensus 564 -----~~ADiVILVVDasd-gi~~qt~EiL~~ak~~-----~vPIIVViNKiDL~ 607 (732)
..+|++|||+|++. .......+++..+... ..|+|+|+||+|+.
T Consensus 110 ~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 110 GFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp HHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred HHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 27899999999876 3333444555554432 24899999999984
No 182
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.53 E-value=1.1e-14 Score=159.21 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=49.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEee-------------------cCC-cceeEEEEeCCC
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVP-------------------VDG-KLQPCVFLDTPG 551 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~-------------------idg-k~i~ItLIDTPG 551 (732)
++|+|+|.+|+|||||+|+|++....++..+++|++.....+.+. +++ ..+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 479999999999999999999887666777888877654433211 122 246799999999
Q ss_pred cccc----chhh---cccccccCeEEEEEEecCC
Q 004746 552 HEAF----GAMR---ARGARVTDIAVIVVAADDG 578 (732)
Q Consensus 552 hE~f----~~~r---~r~~~~ADiVILVVDasdg 578 (732)
+..+ ..+. ..+++.+|++|+|+|++++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 1122 2456899999999999875
No 183
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=1.5e-14 Score=155.82 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=81.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcc-cccc------CCceeeeeeEEEEeecCCcceeEEEEeCCCc-------ccc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEA------GGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-------EAF 555 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~------~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh-------E~f 555 (732)
..++|+|+|++|+|||||+++|+..... .... ...|..+....+.+..++..+.++||||||+ +.|
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 3468999999999999999998765432 2211 1234444444444444555568999999998 556
Q ss_pred chhhc-------ccccc-------------cCeEEEEEEe-cCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHH
Q 004746 556 GAMRA-------RGARV-------------TDIAVIVVAA-DDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PER 613 (732)
Q Consensus 556 ~~~r~-------r~~~~-------------ADiVILVVDa-sdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~er 613 (732)
..+.. .++.. +|+++|+++. .+++.....+++..+. .++|+|+|+||+|+.... ...
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~ 194 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERER 194 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHH
Confidence 55543 33332 2456666654 3456666666666553 579999999999986421 111
Q ss_pred HHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 614 v~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
....+...- .. .+++++++||++|.| ++.|.++...
T Consensus 195 ~k~~i~~~~---~~--~~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 195 LKKRILDEI---EE--HNIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp HHHHHHHHT---TC--C-CCSCCCC----------CHHHHHH
T ss_pred HHHHHHHHH---HH--CCCCEEeCCCcCCCc-chhHHHHHHH
Confidence 112222211 11 146899999999999 7777776643
No 184
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.50 E-value=3.2e-14 Score=139.32 Aligned_cols=153 Identities=14% Similarity=0.177 Sum_probs=96.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCC-----cc-ccccCCceeee------eeEEEEeec----------------CCcc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTK-----VA-AAEAGGITQGI------GAYKVQVPV----------------DGKL 541 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k-----~~-vse~~GtTrdI------~~y~v~i~i----------------dgk~ 541 (732)
+.++|+|+|++|+|||||+++|+... .. +....+++.+. +...+.+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 46799999999999999999998541 11 11112221110 001111111 1134
Q ss_pred eeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC---CChHHHHHHH
Q 004746 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG---ANPERVMQEL 618 (732)
Q Consensus 542 i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~---a~~erv~~eL 618 (732)
+.+.||||+|+-... ..+....+.+|+|+|+.++....+ .+....+.|+++|+||+|+.. ...++....+
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~~~----~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 181 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDVVE----KHPEIFRVADLIVINKVALAEAVGADVEKMKADA 181 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTHHH----HCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchhhh----hhhhhhhcCCEEEEecccCCcchhhHHHHHHHHH
Confidence 678999999951110 011135688999999987643222 222334689999999999843 3455555555
Q ss_pred HHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 619 SSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 619 ~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
..++ ...+++++||++|.|+++|+++|....
T Consensus 182 ~~~~-------~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 182 KLIN-------PRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp HHHC-------TTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHhC-------CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 5432 236799999999999999999998643
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.48 E-value=8.2e-14 Score=142.78 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=82.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhc-------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRA------- 560 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~------- 560 (732)
...++|+++|++|+|||||+|+|++..+. .....++|.+...+.+ ...++.++||||||++++..+..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~ 112 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR----SRAGFTLNIIDTPGLIEGGYINDMALNIIK 112 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEE----EETTEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEE----eeCCeEEEEEECCCCCCCccchHHHHHHHH
Confidence 34689999999999999999999987753 4555666655433322 23457899999999877653322
Q ss_pred cc--ccccCeEEEEEEecC-CCChhhHHHHHHHHhc-C----CCEEEEEeCCCCCC
Q 004746 561 RG--ARVTDIAVIVVAADD-GIRPQTNEAIAHAKAA-G----VPIVIAINKIDKDG 608 (732)
Q Consensus 561 r~--~~~ADiVILVVDasd-gi~~qt~EiL~~ak~~-~----vPIIVViNKiDL~~ 608 (732)
++ ...+|++|||+|++. .......+++..+... + +|+|+|+||+|+..
T Consensus 113 ~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 113 SFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp HHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred HHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 11 247999999999875 3444455666555432 2 68999999999854
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.48 E-value=6.3e-14 Score=149.65 Aligned_cols=159 Identities=13% Similarity=0.201 Sum_probs=101.9
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeee--------------------------------------
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIG-------------------------------------- 529 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~-------------------------------------- 529 (732)
...-+.|+|+|++|+|||||+|+|++..+.....+.+|+...
T Consensus 31 ~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp -CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 345579999999999999999999987663222222221100
Q ss_pred --------------eEEEEeecCCcceeEEEEeCCCcccc-------------chhhcccccccCeEEEEEEecCC--CC
Q 004746 530 --------------AYKVQVPVDGKLQPCVFLDTPGHEAF-------------GAMRARGARVTDIAVIVVAADDG--IR 580 (732)
Q Consensus 530 --------------~y~v~i~idgk~i~ItLIDTPGhE~f-------------~~~r~r~~~~ADiVILVVDasdg--i~ 580 (732)
...+.+. ......++||||||...+ ..+...++..+|++|||+|..+. ..
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~-~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~ 189 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIY-SPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT 189 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEE-ETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG
T ss_pred HHHhcCCCCCcccceEEEEEe-CCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC
Confidence 0011111 112347999999998776 44455677999999999987542 22
Q ss_pred hhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHH
Q 004746 581 PQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIM 653 (732)
Q Consensus 581 ~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii 653 (732)
..+.+++..+...+.|+|+|+||+|+...... ....+.... .....+|+++|++++.++++++..+.
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~-~~~~~~~~~-----~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGTD-AVEILEGRS-----FKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCC-SHHHHTTSS-----SCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCccc-HHHHHcCcc-----ccccCCeEEEEECChHHhccCCCHHH
Confidence 34455666666668899999999998643211 112222211 11246799999999999987765543
No 187
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.43 E-value=2.6e-13 Score=145.30 Aligned_cols=160 Identities=21% Similarity=0.267 Sum_probs=94.7
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC------Cccc-cccCCcee-----------------eeeeEEEEee-------
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT------KVAA-AEAGGITQ-----------------GIGAYKVQVP------- 536 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~------k~~v-se~~GtTr-----------------dI~~y~v~i~------- 536 (732)
..+.++|+|+|++|+|||||+++|... ++.+ .-.+..+. +.+.+.....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 345679999999999999999998632 1111 11111111 0001111000
Q ss_pred -----------cCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCC
Q 004746 537 -----------VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (732)
Q Consensus 537 -----------idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiD 605 (732)
++..++.+.||||||... .....+..+|++|+|+|+..+...+... . .....|+|+|+||+|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~D 228 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKAD 228 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCC
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCC
Confidence 012357899999999432 2223348899999999987643332211 1 112469999999999
Q ss_pred CCCC-ChHHHHHHHHH----cCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 606 KDGA-NPERVMQELSS----IGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 606 L~~a-~~erv~~eL~e----lgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
+... .......++.. .......| ..++++|||++|+||++|+++|....
T Consensus 229 l~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 229 GEHHKEARLAARELSAAIRLIYPREALW--RPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHSTTCCSC--CCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHHHhhccccccCC--CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 8532 11222222222 22111122 46899999999999999999998654
No 188
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.42 E-value=8.5e-13 Score=145.32 Aligned_cols=158 Identities=18% Similarity=0.167 Sum_probs=101.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcccc----chh---hcc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF----GAM---RAR 561 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f----~~~---r~r 561 (732)
.....|+|+|++|+||||||++|.+........+.+|.......+.+ ++ ...++++||||+... ..+ ..+
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~--~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~ 231 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV--SE-EERFTLADIPGIIEGASEGKGLGLEFLR 231 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC--SS-SCEEEEEECCCCCCCGGGSCCSCHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEe--cC-cceEEEEeccccccchhhhhhhhHHHHH
Confidence 44567999999999999999999987655555666665544433432 22 357999999996432 111 122
Q ss_pred cccccCeEEEEEEecCCCChhhHHHHHHHH-----hcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEE
Q 004746 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAK-----AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQ 636 (732)
Q Consensus 562 ~~~~ADiVILVVDasdgi~~qt~EiL~~ak-----~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVe 636 (732)
.+..+|.+|+|+|+++....+.....+.+. ....|.|+++||+|+... .....+...- .. ..+++++
T Consensus 232 ~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l---~~--~g~~vi~ 303 (416)
T 1udx_A 232 HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADAL---AR--EGLAVLP 303 (416)
T ss_dssp HHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHH---HT--TTSCEEE
T ss_pred HHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHH---Hh--cCCeEEE
Confidence 345699999999997111111111111211 136899999999998653 2222221110 00 1257999
Q ss_pred EecCCCCCHHHHHHHHHHHHh
Q 004746 637 ISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 637 VSAKtGeGIdeLfe~Ii~lae 657 (732)
+||++++||++|+++|.....
T Consensus 304 iSA~~g~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 304 VSALTGAGLPALKEALHALVR 324 (416)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EECCCccCHHHHHHHHHHHHH
Confidence 999999999999999987654
No 189
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=148.22 Aligned_cols=161 Identities=20% Similarity=0.233 Sum_probs=88.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC------Ccc-ccccCCcee-----------------eeeeEE--------E-Ee
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVA-AAEAGGITQ-----------------GIGAYK--------V-QV 535 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~------k~~-vse~~GtTr-----------------dI~~y~--------v-~i 535 (732)
...+.|+|+|.+|+|||||+|+|.+. ++. ....+.++. +-..+. + ..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 34789999999999999999999852 211 111111100 000000 0 00
Q ss_pred ---------ecCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCC
Q 004746 536 ---------PVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDK 606 (732)
Q Consensus 536 ---------~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL 606 (732)
.++..++.+.|+||||.... .......+|++++|+|++++...+. +.. .....|.++|+||+|+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~---i~~-~il~~~~ivVlNK~Dl 224 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQG---IKR-GIIEMADLVAVTKSDG 224 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSG
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHH---hHH-HHHhcCCEEEEeeecC
Confidence 00124568999999995321 1223478999999999986532221 111 1235788999999998
Q ss_pred CCCC-hHHHHHHHHH-cCCC-CCCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 607 DGAN-PERVMQELSS-IGLM-PEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 607 ~~a~-~erv~~eL~e-lgl~-~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
.... .......+.. +... ........+++++||++|+|+++|+++|....
T Consensus 225 ~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 225 DLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp GGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 5311 1111222221 1111 10001135789999999999999999998654
No 190
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.39 E-value=6e-13 Score=156.01 Aligned_cols=163 Identities=15% Similarity=0.199 Sum_probs=107.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeee---------------------------------------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIG--------------------------------------- 529 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~--------------------------------------- 529 (732)
...|+|+|+|.+++|||||+|+|++..+.....+.+|+-..
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 35689999999999999999999987653222222221100
Q ss_pred ----------eEEEEeecCCcceeEEEEeCCCccc-------------cchhhcccc-cccCeEEEEEEecCCCChhhH-
Q 004746 530 ----------AYKVQVPVDGKLQPCVFLDTPGHEA-------------FGAMRARGA-RVTDIAVIVVAADDGIRPQTN- 584 (732)
Q Consensus 530 ----------~y~v~i~idgk~i~ItLIDTPGhE~-------------f~~~r~r~~-~~ADiVILVVDasdgi~~qt~- 584 (732)
...+.+.. .....++|+||||... +..+...++ ..+|++|+|+|++.++..++.
T Consensus 129 ~g~~~~is~~~i~l~I~~-P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYS-PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEE-TTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEec-CCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 01111111 1123689999999432 223344444 678999999999988877776
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 585 EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 585 EiL~~ak~~~vPIIVViNKiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
.++..+...+.|+|+|+||+|+....... ..+....+.... .+..+++++||++|.|+++|++.|...
T Consensus 208 ~ll~~L~~~g~pvIlVlNKiDlv~~~~~~--~~il~~~~~~l~-lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVDPQGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLR-RGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHCTTCSSEEEEEECTTSSCTTCCS--HHHHTTCSSCCS-SCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEeCcccCCcchhh--HHHHHHHhhhhh-ccCCceEEecccccccchhHHHHHHHH
Confidence 68888888889999999999986432211 112111111110 122468899999999999999999863
No 191
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.37 E-value=8.2e-13 Score=140.81 Aligned_cols=160 Identities=23% Similarity=0.221 Sum_probs=93.5
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc------CCcc-ccccCCceee-----------------eeeEEEEee-------
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK------TKVA-AAEAGGITQG-----------------IGAYKVQVP------- 536 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~------~k~~-vse~~GtTrd-----------------I~~y~v~i~------- 536 (732)
..++..|+|+|.+|+|||||++.|.. .++. ....++.|.. -..+.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 35678899999999999999999963 2221 1222222210 000000000
Q ss_pred -----------cCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCC
Q 004746 537 -----------VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (732)
Q Consensus 537 -----------idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiD 605 (732)
+...++.+.||||||+..+... ....+|++|+|+|++.+...+.... ...++|.++|+||+|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~D 205 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCC
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCC
Confidence 0123568999999997654432 3488999999999976432222111 112478899999999
Q ss_pred CCCC-ChHHHHHHHHH----cCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 606 KDGA-NPERVMQELSS----IGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 606 L~~a-~~erv~~eL~e----lgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
+... +......++.. .+.....| ..+++++||++|.|+++|+++|....
T Consensus 206 l~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 206 GDNHTNVAIARHMYESALHILRRKYDEW--QPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSBTTB--CCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhccccccCC--CCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 8643 22222222222 12111223 25789999999999999999998754
No 192
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.36 E-value=7.2e-13 Score=150.35 Aligned_cols=120 Identities=21% Similarity=0.288 Sum_probs=87.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCcc---ccccCCceeeeeeEEE--------------------------------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA---AAEAGGITQGIGAYKV-------------------------------- 533 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~---vse~~GtTrdI~~y~v-------------------------------- 533 (732)
...++|+|+|.+|+|||||+|+|++..+. .+..+++++......-
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999988763 4555555432211100
Q ss_pred --EeecCCc-ceeEEEEeCCCccc-----------cchhhcccccccCeEEEEEEecC-CCChhhHHHHHHHHhcCCCEE
Q 004746 534 --QVPVDGK-LQPCVFLDTPGHEA-----------FGAMRARGARVTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVPIV 598 (732)
Q Consensus 534 --~i~idgk-~i~ItLIDTPGhE~-----------f~~~r~r~~~~ADiVILVVDasd-gi~~qt~EiL~~ak~~~vPII 598 (732)
...+.+. ...++||||||+.. |......++..+|++|+|+|+++ ++..++.+++..+...+.|+|
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 0000000 03689999999764 44555566788999999999988 577778888888877788999
Q ss_pred EEEeCCCCCC
Q 004746 599 IAINKIDKDG 608 (732)
Q Consensus 599 VViNKiDL~~ 608 (732)
+|+||+|+..
T Consensus 223 lVlNK~Dl~~ 232 (550)
T 2qpt_A 223 VVLNKADMVE 232 (550)
T ss_dssp EEEECGGGSC
T ss_pred EEEECCCccC
Confidence 9999999864
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.34 E-value=3.3e-12 Score=128.44 Aligned_cols=116 Identities=19% Similarity=0.155 Sum_probs=71.6
Q ss_pred ceeEEEEeCCCccccchhhc------ccccccCeEEEEEEecCCCChhhHHH-----HHHHHhcCCCEEEEEeCCCCCCC
Q 004746 541 LQPCVFLDTPGHEAFGAMRA------RGARVTDIAVIVVAADDGIRPQTNEA-----IAHAKAAGVPIVIAINKIDKDGA 609 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~------r~~~~ADiVILVVDasdgi~~qt~Ei-----L~~ak~~~vPIIVViNKiDL~~a 609 (732)
.+.+.||||||+..+..... ..+.. +++|+++|+........... .......++|+++|+||+|+...
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 35899999999866543221 24455 89999999876555443321 12223457999999999998542
Q ss_pred C-hHHHHHHHHHcC-----C----------------CCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHh
Q 004746 610 N-PERVMQELSSIG-----L----------------MPEDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 610 ~-~erv~~eL~elg-----l----------------~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
. ...+...+.+.. + ....++...+++++||++|+|+++|+++|.....
T Consensus 187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 1 111111110000 0 0011222357999999999999999999986543
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.34 E-value=1.4e-12 Score=137.13 Aligned_cols=155 Identities=19% Similarity=0.246 Sum_probs=79.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC-CccccccC------CceeeeeeEEEEeecCCcceeEEEEeCCCc-------cccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT-KVAAAEAG------GITQGIGAYKVQVPVDGKLQPCVFLDTPGH-------EAFG 556 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~-k~~vse~~------GtTrdI~~y~v~i~idgk~i~ItLIDTPGh-------E~f~ 556 (732)
.++|+|+|+.|+|||||+++|.+. .+...... ..|..+....+.+...+....+++|||+|+ +.|.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 468999999999999999998865 33221110 112222222233333444568999999997 5554
Q ss_pred hhhc-------ccccc-------------cCeEEEEEEecC-CCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCCh----
Q 004746 557 AMRA-------RGARV-------------TDIAVIVVAADD-GIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP---- 611 (732)
Q Consensus 557 ~~r~-------r~~~~-------------ADiVILVVDasd-gi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~---- 611 (732)
.+.. .++.. ++++||+++.+. ++.+...+++..+. .++++++|+||+|+.....
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~ 176 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERL 176 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHHH
Confidence 4332 22222 344555555443 47777766666664 3679999999999854211
Q ss_pred -HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 612 -ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 612 -erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
++..+.+... .++++++||++| |++++|+.+....
T Consensus 177 ~~~~~~~~~~~---------~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 177 KKRILDEIEEH---------NIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHHHT---------TCCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHc---------CCeEEecCCccc-cccHHHHHHHHHh
Confidence 1122222322 257999999999 9999999887643
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.31 E-value=9.9e-12 Score=134.72 Aligned_cols=85 Identities=24% Similarity=0.149 Sum_probs=61.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCc---------------ceeEEEEeCCCcccc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK---------------LQPCVFLDTPGHEAF 555 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk---------------~i~ItLIDTPGhE~f 555 (732)
..+|+|+|.+|+|||||+|+|++..+.....+++|++.....+.+ .+. ...+.||||||+..+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~--~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM--PDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEEC--CCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEec--CCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 368999999999999999999988876777788888776655543 222 147999999998765
Q ss_pred ch----hh---cccccccCeEEEEEEecC
Q 004746 556 GA----MR---ARGARVTDIAVIVVAADD 577 (732)
Q Consensus 556 ~~----~r---~r~~~~ADiVILVVDasd 577 (732)
.. +. ..+++.+|++|+|+|+++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 31 22 234688999999999986
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.31 E-value=1.5e-11 Score=120.73 Aligned_cols=154 Identities=20% Similarity=0.194 Sum_probs=90.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeee------------eEEEEeecC------------------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIG------------AYKVQVPVD------------------ 538 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~------------~y~v~i~id------------------ 538 (732)
.+.++|+|+|++|+|||||+++|+...+.....+.+..++. ...+.+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 35689999999999999999999865322111111111111 111111100
Q ss_pred CcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC---CChHHHH
Q 004746 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG---ANPERVM 615 (732)
Q Consensus 539 gk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~---a~~erv~ 615 (732)
.....+.|+|++|.-.. ...+....+.+++|+|+..+...... .. ...+.|+++|+||+|+.. ...++..
T Consensus 116 ~~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~~-~~---~~~~~~~iiv~NK~Dl~~~~~~~~~~~~ 188 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIEK-HP---GIMKTADLIVINKIDLADAVGADIKKME 188 (226)
T ss_dssp GGGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTTT-CH---HHHTTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred cCCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHhh-hh---hHhhcCCEEEEeccccCchhHHHHHHHH
Confidence 11236888888883111 11111344667788886543221111 11 113689999999999853 2344444
Q ss_pred HHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 616 QELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 616 ~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
..+..++ ...+++++||++|.|+++||++|....
T Consensus 189 ~~~~~~~-------~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 189 NDAKRIN-------PDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp HHHHHHC-------TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhC-------CCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 4444432 236899999999999999999997643
No 197
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.1e-11 Score=135.00 Aligned_cols=164 Identities=21% Similarity=0.192 Sum_probs=108.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcccc-------chhhccccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF-------GAMRARGAR 564 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f-------~~~r~r~~~ 564 (732)
..|+|+|.||||||||+|+|++.+..+...+++|++.....+.+ .+..+.|+||||.-.- .......++
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~----~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY----KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE----TTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe----CCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 47999999999999999999998888889999999876665554 3468999999994221 112223458
Q ss_pred ccCeEEEEEEecCCCChhhHHHH-HHHHh-----cCCCEEEEEeCCCCCC-----------CChHHHHHHHHHcCCCC--
Q 004746 565 VTDIAVIVVAADDGIRPQTNEAI-AHAKA-----AGVPIVIAINKIDKDG-----------ANPERVMQELSSIGLMP-- 625 (732)
Q Consensus 565 ~ADiVILVVDasdgi~~qt~EiL-~~ak~-----~~vPIIVViNKiDL~~-----------a~~erv~~eL~elgl~~-- 625 (732)
.||++++|+|+++++.. .+.+ ..+.. ...|.++++||+|... .+.+.+...+..+.+..
T Consensus 149 ~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp 226 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE 226 (376)
T ss_dssp HCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred hcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence 89999999999874321 2222 12222 2467888999999632 12233222222111100
Q ss_pred --------------------C---------------------CCCCCCCEEEEecCCCCCHHHHHHHHHHHHhhhhh
Q 004746 626 --------------------E---------------------DWGGDIPMVQISALKGEKVDDLLETIMLVAELQEL 661 (732)
Q Consensus 626 --------------------e---------------------~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lael~~l 661 (732)
. .......++++|+..+.|++.|.+.+..+..+..+
T Consensus 227 v~~~~nv~eddl~d~~~~~~~~~~p~i~v~nKid~~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~ 303 (376)
T 4a9a_A 227 IAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRI 303 (376)
T ss_dssp EEECSCCCHHHHHHHHTTTTCEEECEEEEEECGGGSCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEE
T ss_pred eeecccCCHHHHHHHHHHHHhhccceEEEEecccccCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEE
Confidence 0 00122358899999999999999998876655443
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.23 E-value=1.1e-11 Score=134.35 Aligned_cols=86 Identities=17% Similarity=0.062 Sum_probs=60.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeec------------C-----CcceeEEEEeCCCccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV------------D-----GKLQPCVFLDTPGHEA 554 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~i------------d-----gk~i~ItLIDTPGhE~ 554 (732)
++|+|+|.+|+|||||+|+|.+........+++|++.+...+.+.- . .....+.||||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999997654455566666655444333210 0 0235799999999766
Q ss_pred cch-------hhcccccccCeEEEEEEecC
Q 004746 555 FGA-------MRARGARVTDIAVIVVAADD 577 (732)
Q Consensus 555 f~~-------~r~r~~~~ADiVILVVDasd 577 (732)
+.. .....++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 421 12234689999999999985
No 199
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.22 E-value=1.9e-11 Score=134.64 Aligned_cols=154 Identities=21% Similarity=0.282 Sum_probs=77.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCccccccCC------ceeeeeeEEEEeecCCcceeEEEEeCCCccccc-------h
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGG------ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG-------A 557 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~G------tTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~-------~ 557 (732)
.++|+|+|++|+|||||++.|++..+.....++ .|.......+.+...+....+++|||+|...+. .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 357899999999999999999976653111111 122111111111122333478999999976541 1
Q ss_pred h------------------hccccccc--CeEEEEEEec-CCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-h----
Q 004746 558 M------------------RARGARVT--DIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-P---- 611 (732)
Q Consensus 558 ~------------------r~r~~~~A--DiVILVVDas-dgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~---- 611 (732)
+ ....+..+ |++||+++.+ .++.+.+.+++..+.. ++++|+|+||+|+.... .
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~k 189 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 189 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHHH
Confidence 0 11233444 4555555554 5777777778877764 89999999999985421 1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHH
Q 004746 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (732)
Q Consensus 612 erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~ 654 (732)
..+...+... +++++++||+++.++++++..|..
T Consensus 190 ~~i~~~~~~~---------~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 190 KQIMKEIQEH---------KIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHHHH---------TCCCCCCC----------------
T ss_pred HHHHHHHHHc---------CCeEEeCCCCCCcCHHHHHHHHHh
Confidence 1222333333 257899999999999988877653
No 200
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.20 E-value=4.9e-11 Score=127.57 Aligned_cols=117 Identities=11% Similarity=0.050 Sum_probs=80.4
Q ss_pred cceeEEEEeCCCccccchhhcccccccCeEEEEEEec-------CCCC----hhhHHHHHHHHh----cCCCEEEEEeCC
Q 004746 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAAD-------DGIR----PQTNEAIAHAKA----AGVPIVIAINKI 604 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDas-------dgi~----~qt~EiL~~ak~----~~vPIIVViNKi 604 (732)
+.+.+.+|||+|++.|...|..+++.++++|||+|++ +... .....++..+.. .++|+|+++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 4578999999999999999999999999999999987 2211 122333333322 468999999999
Q ss_pred CCCC-------------------CChHHHHHHHHHc--CCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHh
Q 004746 605 DKDG-------------------ANPERVMQELSSI--GLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 605 DL~~-------------------a~~erv~~eL~el--gl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
|+.. .+.+.....+... .+.. .-...+.++++||+++.||+.+|+.+....-
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~-~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNP-DSDKIIYSHFTCATDTENIRFVFAAVKDTIL 317 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCT-TTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcc-cccCCcEEEEEEeecCHHHHHHHHHHHHHHH
Confidence 9732 2333333332210 1110 1112466889999999999999999987543
No 201
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.13 E-value=1.2e-10 Score=125.46 Aligned_cols=130 Identities=15% Similarity=0.035 Sum_probs=89.0
Q ss_pred CceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCC-----------ChhhHHHHHHHH
Q 004746 523 GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-----------RPQTNEAIAHAK 591 (732)
Q Consensus 523 GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi-----------~~qt~EiL~~ak 591 (732)
..|.++..+.+.+ +.+.+.||||+|++.|...|..++..++++|||||+++.- ......++..+.
T Consensus 178 ~~T~Gi~~~~~~~----~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 178 VKTTGIVETHFTF----KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp CCCCSEEEEEEEE----TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred CceeceEEEEEee----CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 3455555444443 3578999999999999999999999999999999999721 222333444333
Q ss_pred h----cCCCEEEEEeCCCCCC------------------CChHHHHHHHHHc--CCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 592 A----AGVPIVIAINKIDKDG------------------ANPERVMQELSSI--GLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 592 ~----~~vPIIVViNKiDL~~------------------a~~erv~~eL~el--gl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
. .++|+|+++||+|+.. .+.++....+... .+........+.+++|||++|.||++
T Consensus 254 ~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 254 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred cCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 2 4689999999999831 2333333333321 11111011346799999999999999
Q ss_pred HHHHHHHHH
Q 004746 648 LLETIMLVA 656 (732)
Q Consensus 648 Lfe~Ii~la 656 (732)
+|+++....
T Consensus 334 vF~~v~~~i 342 (353)
T 1cip_A 334 VFDAVTDVI 342 (353)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 202
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.12 E-value=1.1e-10 Score=125.61 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=79.4
Q ss_pred cceeEEEEeCCCccccchhhcccccccCeEEEEEEecC-----------CCChhhHHHHHHHHh----cCCCEEEEEeCC
Q 004746 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD-----------GIRPQTNEAIAHAKA----AGVPIVIAINKI 604 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasd-----------gi~~qt~EiL~~ak~----~~vPIIVViNKi 604 (732)
+.+.+.||||+|++.|...|..+++.++++|||||+++ ........++..+.. .++|+|+++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 45789999999999999999999999999999999982 111222333333322 478999999999
Q ss_pred CCCC------------------CChHHHHHHHHHcC--------CCCCCC----------CCCCCEEEEecCCCCCHHHH
Q 004746 605 DKDG------------------ANPERVMQELSSIG--------LMPEDW----------GGDIPMVQISALKGEKVDDL 648 (732)
Q Consensus 605 DL~~------------------a~~erv~~eL~elg--------l~~e~~----------gg~ipiVeVSAKtGeGIdeL 648 (732)
|+.. .+.++....+...- +....- +..+.++++||++..||+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 9732 12233333322211 110000 02467899999999999999
Q ss_pred HHHHHHHH
Q 004746 649 LETIMLVA 656 (732)
Q Consensus 649 fe~Ii~la 656 (732)
|+.+....
T Consensus 319 F~~v~~~I 326 (340)
T 4fid_A 319 FMLAVDVI 326 (340)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988654
No 203
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.09 E-value=5e-11 Score=124.98 Aligned_cols=133 Identities=16% Similarity=0.093 Sum_probs=90.1
Q ss_pred HHHHHHHcCCcc-ccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCC-Chh-
Q 004746 506 TLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-RPQ- 582 (732)
Q Consensus 506 SLLnrLl~~k~~-vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi-~~q- 582 (732)
+|+.++....+. ..+.+ |.+ ..+.+.+ ..+. .+.+||| ++.|..++..+++.+|++|+|||+++.. ...
T Consensus 32 sl~~~~~~~~f~~~~~~p--TiG-d~~~~~~--~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~ 103 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKI--YVG-DRVEYTP--DETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYI 103 (301)
T ss_dssp CEEEEEECGGGTTTTCCC--CTT-CEEEEEC--CCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHH
T ss_pred cEEEEEEcccccccCCCC--CCc-cEEEEEE--cCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHH
Confidence 466666666665 33333 444 2333333 2222 7999999 9999999999999999999999999754 333
Q ss_pred hHHHHHHHHhcCCCEEEEEeCCCCCCCCh-HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHH
Q 004746 583 TNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIM 653 (732)
Q Consensus 583 t~EiL~~ak~~~vPIIVViNKiDL~~a~~-erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii 653 (732)
...++..++..++|+|+|+||+|+..... ++.......+.. . +++++|||++|.||+++|+.+.
T Consensus 104 l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~------~-~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 104 IDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSG------L-YPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT------T-SCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh------h-CcEEEEECCCCcCHHHHHHHhc
Confidence 23445555567899999999999964211 112222222221 1 5799999999999999998864
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.08 E-value=2.2e-10 Score=122.38 Aligned_cols=161 Identities=23% Similarity=0.277 Sum_probs=90.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc------CCcc-ccccCCce-----------------eeeeeEEEEee-------
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK------TKVA-AAEAGGIT-----------------QGIGAYKVQVP------- 536 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~------~k~~-vse~~GtT-----------------rdI~~y~v~i~------- 536 (732)
..++..|+|+|.+|+|||||++.|.+ .++. .+.....+ ++...+.....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 35677899999999999999999973 3322 11111111 11111111000
Q ss_pred -----------cCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCC
Q 004746 537 -----------VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (732)
Q Consensus 537 -----------idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiD 605 (732)
+...++.+.|+||||...-. ......+|++++|+|+..+...+. +...+ ...+.++++||+|
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~D 204 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKAD 204 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCS
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchh
Confidence 11235689999999953211 112368999999999764321110 00001 1246678889999
Q ss_pred CCCCCh--HHHHHHHHH-cCCCC---CCCCCCCCEEEEecCCCCCHHHHHHHHHHHHh
Q 004746 606 KDGANP--ERVMQELSS-IGLMP---EDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 606 L~~a~~--erv~~eL~e-lgl~~---e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
+..... ....+.+.. ..+.. ..| ..+++.+||++|.|+++|++.|.....
T Consensus 205 l~~~~~~s~~~~~~l~~a~~l~~~~~~~~--~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 205 DGDGERRASAAASEYRAALHILTPPSATW--TPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTBCCSBTTB--CCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ccCchhHHHHHHHHHHHHHHhccccccCC--CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 743211 112222222 11111 112 357899999999999999999987543
No 205
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.04 E-value=3.4e-10 Score=122.45 Aligned_cols=154 Identities=16% Similarity=0.119 Sum_probs=92.4
Q ss_pred CCCCHHHH--HHHHHcCCccccc-----cCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEE
Q 004746 500 VDHGKTTL--LDHIRKTKVAAAE-----AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (732)
Q Consensus 500 ~nvGKSSL--LnrLl~~k~~vse-----~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILV 572 (732)
.++.+--| +.++....+..+. ....|.++..+.+.+ +.+.+.||||+|++.|...+..++..++++|||
T Consensus 156 ~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~~~----~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv 231 (362)
T 1zcb_A 156 GESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEI----KNVPFKMVDVGGQRSERKRWFECFDSVTSILFL 231 (362)
T ss_dssp CTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEEEEEE----TTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred cccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEEEeee----CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEE
Confidence 56666655 6666655554331 223455555444443 357899999999999999999999999999999
Q ss_pred EEecCCC-----------ChhhHHHHHHHHh----cCCCEEEEEeCCCCCC-------------------CChHHHHHHH
Q 004746 573 VAADDGI-----------RPQTNEAIAHAKA----AGVPIVIAINKIDKDG-------------------ANPERVMQEL 618 (732)
Q Consensus 573 VDasdgi-----------~~qt~EiL~~ak~----~~vPIIVViNKiDL~~-------------------a~~erv~~eL 618 (732)
||+++-- ......++..+.. .++|+|+++||+|+.. .+.++....+
T Consensus 232 ~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~ 311 (362)
T 1zcb_A 232 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL 311 (362)
T ss_dssp EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred EECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHH
Confidence 9999721 1222333333322 3689999999999841 2233333322
Q ss_pred HHc--CCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHh
Q 004746 619 SSI--GLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 619 ~el--gl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
... .+........+.++++||+++.||+++|+++.....
T Consensus 312 ~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 312 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 110 111100023467899999999999999999987553
No 206
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.00 E-value=4.2e-10 Score=126.78 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=93.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHH------cCCcccccc----CCc---------eeeeeeEEEEee-------------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIR------KTKVAAAEA----GGI---------TQGIGAYKVQVP------------- 536 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl------~~k~~vse~----~Gt---------TrdI~~y~v~i~------------- 536 (732)
.++.+|+|+|++|+|||||++.|. +.++..... ++. ..++.++.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346689999999999999999998 333321110 000 001222221000
Q ss_pred cCCcceeEEEEeCCCccccc----hhhccc--ccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCE-EEEEeCCCCCCC
Q 004746 537 VDGKLQPCVFLDTPGHEAFG----AMRARG--ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPI-VIAINKIDKDGA 609 (732)
Q Consensus 537 idgk~i~ItLIDTPGhE~f~----~~r~r~--~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPI-IVViNKiDL~~a 609 (732)
+...++.+.||||||..... ...... +..+|.++||+|+..+.. ..+.+..+... +|+ ++|+||+|....
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCCC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccccc
Confidence 00145689999999964321 111111 236899999999988643 33444444332 785 899999998643
Q ss_pred ChHHHHHHHHHcCCCC---------CCCCCCCCEEEEecCCCCC-HHHHHHHHHHH
Q 004746 610 NPERVMQELSSIGLMP---------EDWGGDIPMVQISALKGEK-VDDLLETIMLV 655 (732)
Q Consensus 610 ~~erv~~eL~elgl~~---------e~~gg~ipiVeVSAKtGeG-IdeLfe~Ii~l 655 (732)
. ..........+... ..+....+.+++|++.|.| +++|++++...
T Consensus 256 ~-g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 256 G-GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp C-THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred h-HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 2 22222222222111 1111123456789999999 99999998754
No 207
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.90 E-value=1.3e-09 Score=117.57 Aligned_cols=156 Identities=13% Similarity=0.094 Sum_probs=93.2
Q ss_pred CCCCHHHH--HHHHHcCCccccc-----cCCceeeeeeEEEEeecCC----cceeEEEEeCCCccccchhhcccccccCe
Q 004746 500 VDHGKTTL--LDHIRKTKVAAAE-----AGGITQGIGAYKVQVPVDG----KLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (732)
Q Consensus 500 ~nvGKSSL--LnrLl~~k~~vse-----~~GtTrdI~~y~v~i~idg----k~i~ItLIDTPGhE~f~~~r~r~~~~ADi 568 (732)
.++.+.-| +.++....+..+. ....|.++..+.+ .+++ +.+.+.||||+|++.|..++..+++.+|+
T Consensus 132 ~d~~~yfl~~~~ri~~~~Y~PT~~D~~~~r~~T~Gi~e~~f--~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~ 209 (354)
T 2xtz_A 132 PDCTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQF--SPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTA 209 (354)
T ss_dssp CTTHHHHHTSHHHHHSTTCCCCHHHHHHCCCCCCSEEEEEE--CCCCE------EEEEEEECCSTTGGGGTGGGCTTEEE
T ss_pred hccHHHHHHHHHHHhcCCCCCCchheeeecccccceeeEEE--EeccCccccceeeEEEECCCchhhhHHHHHHhCCCCE
Confidence 56666555 5566555544321 2223444433333 3444 56899999999999999999999999999
Q ss_pred EEEEEEecC-------C-C---ChhhHHHHHHHHh----cCCCEEEEEeCCCCCCC-----C------------------
Q 004746 569 AVIVVAADD-------G-I---RPQTNEAIAHAKA----AGVPIVIAINKIDKDGA-----N------------------ 610 (732)
Q Consensus 569 VILVVDasd-------g-i---~~qt~EiL~~ak~----~~vPIIVViNKiDL~~a-----~------------------ 610 (732)
+|||||+++ . . ......++..+.. .++|+|+|+||+|+... .
T Consensus 210 iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~ 289 (354)
T 2xtz_A 210 VIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQ 289 (354)
T ss_dssp EEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHH
T ss_pred EEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCc
Confidence 999999982 1 1 1222333333322 46899999999997320 0
Q ss_pred -hHHHHHHHHH----c---CCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHHh
Q 004746 611 -PERVMQELSS----I---GLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (732)
Q Consensus 611 -~erv~~eL~e----l---gl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~lae 657 (732)
.++....+.. + ......-...+.+++|||+++.||+++|+++.....
T Consensus 290 ~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~ 344 (354)
T 2xtz_A 290 EIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLR 344 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHH
Confidence 1111111111 0 000000011245689999999999999999986543
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.84 E-value=2e-08 Score=109.90 Aligned_cols=88 Identities=25% Similarity=0.206 Sum_probs=66.5
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCc---------------ceeEEEEeCCC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGK---------------LQPCVFLDTPG 551 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk---------------~i~ItLIDTPG 551 (732)
...+.+|+|+|++|+|||||+|+|.+..+ .....+++|++.....+.+. +. ...+.||||||
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~--~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP--DERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEEC--CHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeC--CcchhhhhhhcccccccCcceEEEeccc
Confidence 34578999999999999999999999877 67788888888766665542 21 13589999999
Q ss_pred ccc-------cchhhcccccccCeEEEEEEecC
Q 004746 552 HEA-------FGAMRARGARVTDIAVIVVAADD 577 (732)
Q Consensus 552 hE~-------f~~~r~r~~~~ADiVILVVDasd 577 (732)
... +.......++.+|++++|+|+.+
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 432 22233345578999999999864
No 209
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.80 E-value=1.8e-10 Score=124.37 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=74.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC------CccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccch-------
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT------KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA------- 557 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~------k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~------- 557 (732)
..+|+++|.+|+|||||+|+|++. ....+..+|+|++... +.+.. .+.|+||||......
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~----~~~~~---~~~liDtPG~~~~~~~~~~l~~ 234 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE----IPLES---GATLYDTPGIINHHQMAHFVDA 234 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE----EECST---TCEEEECCSCCCCSSGGGGSCT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE----EEeCC---CeEEEeCCCcCcHHHHHHHHhH
Confidence 468999999999999999999975 4556788899987633 22332 389999999432211
Q ss_pred hhcccc---cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC
Q 004746 558 MRARGA---RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG 608 (732)
Q Consensus 558 ~r~r~~---~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~ 608 (732)
.....+ ...|.++++++..........+.+.++...+.|+++++||+|...
T Consensus 235 ~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 235 RDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp TTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccc
Confidence 111112 667999999988432111111123334455789999999999754
No 210
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.80 E-value=3.9e-09 Score=115.90 Aligned_cols=129 Identities=16% Similarity=0.073 Sum_probs=82.9
Q ss_pred ceeeeeeEEEEeecCCcceeEEEEeCCCccccchhhcccccccCeEEEEEEecC----------CC-ChhhHHHHHHHHh
Q 004746 524 ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD----------GI-RPQTNEAIAHAKA 592 (732)
Q Consensus 524 tTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasd----------gi-~~qt~EiL~~ak~ 592 (732)
.|.++..+.+.+ + .+.+.||||+|++.|...+..+++.++++|||||+++ .- ......++..+..
T Consensus 203 ~TiGi~~~~~~~--~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~ 278 (402)
T 1azs_C 203 LTSGIFETKFQV--D--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 278 (402)
T ss_dssp CCCSEEEEEEEE--T--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred ceeeeEEEEeec--C--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence 355555444443 3 4789999999999999999999999999999999997 11 1122333333332
Q ss_pred ----cCCCEEEEEeCCCCCCCC---------------------------------hHHHHHHH----HHcCCCCCCCCCC
Q 004746 593 ----AGVPIVIAINKIDKDGAN---------------------------------PERVMQEL----SSIGLMPEDWGGD 631 (732)
Q Consensus 593 ----~~vPIIVViNKiDL~~a~---------------------------------~erv~~eL----~elgl~~e~~gg~ 631 (732)
.++|+|+|+||+|+.... .+.....+ .........-...
T Consensus 279 ~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~ 358 (402)
T 1azs_C 279 NRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHY 358 (402)
T ss_dssp CTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSC
T ss_pred cccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcc
Confidence 368999999999973210 01111111 1110000000013
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 632 IPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 632 ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
+.++++||+++.||+++|+++....
T Consensus 359 ~~~~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 359 CYPHFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeecCcCHHHHHHHHHHHH
Confidence 4578999999999999999987654
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.75 E-value=8.3e-09 Score=113.09 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=53.4
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCc---------------ceeEEEEeCCCc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK---------------LQPCVFLDTPGH 552 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk---------------~i~ItLIDTPGh 552 (732)
...+.+|+|+|.+|+|||||+|+|.+..+.....+++|++.....+.+ .+. ...+.||||||+
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v--~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV--PDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC--CCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE--CCccceeeccccCcccccccccEEEECCCc
Confidence 355689999999999999999999988877778888898876665554 221 235999999997
Q ss_pred cccch-------hhcccccccCeEEEEEEecC
Q 004746 553 EAFGA-------MRARGARVTDIAVIVVAADD 577 (732)
Q Consensus 553 E~f~~-------~r~r~~~~ADiVILVVDasd 577 (732)
..+.. ....+++.+|++|+|+|+++
T Consensus 97 ~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 97 VKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 65433 33456689999999999874
No 212
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.69 E-value=2.4e-08 Score=104.83 Aligned_cols=93 Identities=20% Similarity=0.181 Sum_probs=68.3
Q ss_pred ccccchhhcccccccCeEEEEEEecCCC-Chhh-HHHHHHHHhcCCCEEEEEeCCCCCCCC----hHHHHHHHHHcCCCC
Q 004746 552 HEAFGAMRARGARVTDIAVIVVAADDGI-RPQT-NEAIAHAKAAGVPIVIAINKIDKDGAN----PERVMQELSSIGLMP 625 (732)
Q Consensus 552 hE~f~~~r~r~~~~ADiVILVVDasdgi-~~qt-~EiL~~ak~~~vPIIVViNKiDL~~a~----~erv~~eL~elgl~~ 625 (732)
++.|..+...++.++|++|+|+|+++.. .... ..++..+...++|+|+|+||+|+.... .+.....+...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~---- 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDA---- 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT----
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHC----
Confidence 7778877778899999999999999753 4433 345555666789999999999996422 11122222222
Q ss_pred CCCCCCCCEEEEecCCCCCHHHHHHHHH
Q 004746 626 EDWGGDIPMVQISALKGEKVDDLLETIM 653 (732)
Q Consensus 626 e~~gg~ipiVeVSAKtGeGIdeLfe~Ii 653 (732)
.++++++||++|.|+++|++.+.
T Consensus 142 -----g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 142 -----GYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp -----TCEEEECCTTTCTTHHHHHHHTT
T ss_pred -----CCeEEEEECCCCCCHHHHHhhcc
Confidence 25799999999999999998764
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.64 E-value=4.2e-09 Score=113.80 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=69.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC-------CccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccccchh-----
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT-------KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM----- 558 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~-------k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~~----- 558 (732)
..+|+++|.+|+|||||+|+|++. ....+..+|+|++...+ .+.. .+.|+||||......+
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~----~~~~---~~~liDtPG~~~~~~~~~~l~ 232 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDI----PLDE---ESSLYDTPGIINHHQMAHYVG 232 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEE----ESSS---SCEEEECCCBCCTTSGGGGSC
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEE----EecC---CeEEEeCCCcCcHHHHHHHhh
Confidence 468999999999999999999864 22356778899876332 2333 2899999995322111
Q ss_pred ---hccc--ccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC
Q 004746 559 ---RARG--ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA 609 (732)
Q Consensus 559 ---r~r~--~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a 609 (732)
.... ....+.++++++............+.++...+.|+++++||+|....
T Consensus 233 ~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 233 KQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE
T ss_pred HHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccccc
Confidence 1111 25678899999874321111112233344457899999999998543
No 214
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.54 E-value=1.4e-07 Score=95.87 Aligned_cols=99 Identities=14% Similarity=0.024 Sum_probs=67.1
Q ss_pred CccccchhhcccccccCeEEEEEEecCCCChhhHHHHHH----HHh----cCCCEEEEEeCC-CCCCC-ChHHHHHHHHH
Q 004746 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAH----AKA----AGVPIVIAINKI-DKDGA-NPERVMQELSS 620 (732)
Q Consensus 551 GhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~----ak~----~~vPIIVViNKi-DL~~a-~~erv~~eL~e 620 (732)
|++.+..+|..|+..+|++|||||++|.......+.+.. +.. .++|++|++||. |++++ ...++.+.+.-
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L 190 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHL 190 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTG
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCC
Confidence 788999999999999999999999998644334443321 211 478999999995 78764 44455544332
Q ss_pred cCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHH
Q 004746 621 IGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (732)
Q Consensus 621 lgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~ 654 (732)
..+ . ....++.|||++|+|+.+-++||..
T Consensus 191 ~~l-~----R~W~Iq~csA~TGeGL~EGLdWL~~ 219 (227)
T 3l82_B 191 NLL-N----HPWLVQDTEAETLTGFLNGIEWILE 219 (227)
T ss_dssp GGG-C----SCEEEEEEETTTCTTHHHHHHHHTT
T ss_pred cCC-C----CCEEEEEeECCCCcCHHHHHHHHHH
Confidence 222 1 2457999999999999999999974
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.53 E-value=6.3e-08 Score=107.08 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=70.5
Q ss_pred cCCCCE--EEEEeCCCCCHHHHHHHHHcCCccc----cccCCceeeeeeEEEEeecCCcceeEEEEeCCCcccc------
Q 004746 488 EDRPPV--LTIMGHVDHGKTTLLDHIRKTKVAA----AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF------ 555 (732)
Q Consensus 488 ~~r~~k--VaIVG~~nvGKSSLLnrLl~~k~~v----se~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f------ 555 (732)
...+.. ++|+|++|+|||||++.|.+..+.. ...++.++....+.. ...+-...++++|++|....
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~--Q~~~l~~~ltv~D~~~~g~~~~~~~~ 114 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDL--QESNVRLKLTIVSTVGFGDQINKEDS 114 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEE--EC--CEEEEEEEEEECCCC-CCHHHH
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEe--ecCccccccchhhhhhhhhccccchh
Confidence 345555 9999999999999999999764321 112333333211211 11222236899999984321
Q ss_pred ------------chhhcc---------ccccc--C-eEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC
Q 004746 556 ------------GAMRAR---------GARVT--D-IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG 608 (732)
Q Consensus 556 ------------~~~r~r---------~~~~A--D-iVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~ 608 (732)
...... ....+ | +++|++|+.+++...+.+++..+. .++|+|+|+||+|...
T Consensus 115 ~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 115 YKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAIS 190 (427)
T ss_dssp SHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSC
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccc
Confidence 000111 11222 3 466778888889998888888886 6899999999999753
No 216
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.49 E-value=1.2e-06 Score=96.52 Aligned_cols=164 Identities=15% Similarity=0.218 Sum_probs=95.3
Q ss_pred cccCCCCEEEEEeCCCCCHHHHHHHHHcCCc----cccc-cCCceeeeeeEEEEeecCCcceeEEEEeCCCcccc----c
Q 004746 486 KLEDRPPVLTIMGHVDHGKTTLLDHIRKTKV----AAAE-AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF----G 556 (732)
Q Consensus 486 ~l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~----~vse-~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f----~ 556 (732)
........|+|+|++|+|||||+|.|.+-.. .+.. ...+|+. .+.... .....++++|++|...- .
T Consensus 64 ~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q~---~~~~~ltv~D~~g~~~~~~~~~ 138 (413)
T 1tq4_A 64 EIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYKH---PNIPNVVFWDLPGIGSTNFPPD 138 (413)
T ss_dssp HHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEEC---SSCTTEEEEECCCGGGSSCCHH
T ss_pred hcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEeccc---cccCCeeehHhhcccchHHHHH
Confidence 3445567899999999999999999987321 1111 0112222 121111 11226899999994211 1
Q ss_pred h-hhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCC-------C---CChHHHHHHHHHcCCC-
Q 004746 557 A-MRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD-------G---ANPERVMQELSSIGLM- 624 (732)
Q Consensus 557 ~-~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~-------~---a~~erv~~eL~elgl~- 624 (732)
. +....+...|.+++ ++... .+.+...++..+...+.|+++|+||.|+. . ....++.+.+.++...
T Consensus 139 ~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~ 216 (413)
T 1tq4_A 139 TYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT 216 (413)
T ss_dssp HHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 1 11123344455554 66543 56777777777777889999999999962 1 1233344333332100
Q ss_pred CCCCC-CCCCEEEEec--CCCCCHHHHHHHHHHHH
Q 004746 625 PEDWG-GDIPMVQISA--LKGEKVDDLLETIMLVA 656 (732)
Q Consensus 625 ~e~~g-g~ipiVeVSA--KtGeGIdeLfe~Ii~la 656 (732)
....+ ....+|.+|+ ..+.|+++|.+.|....
T Consensus 217 l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 217 FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred HHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 00000 1236899999 67778999999997543
No 217
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.39 E-value=6.7e-07 Score=99.36 Aligned_cols=144 Identities=21% Similarity=0.275 Sum_probs=78.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc------CCcccc--c--cCC---------ceeeeeeEEEEee-------------c
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK------TKVAAA--E--AGG---------ITQGIGAYKVQVP-------------V 537 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~------~k~~vs--e--~~G---------tTrdI~~y~v~i~-------------i 537 (732)
++..|+|+|.+|+||||++..|.. .++... + .++ ...++.++..... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998862 222110 0 000 0001111111000 0
Q ss_pred CCcceeEEEEeCCCccccch----hhc--ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCCh
Q 004746 538 DGKLQPCVFLDTPGHEAFGA----MRA--RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP 611 (732)
Q Consensus 538 dgk~i~ItLIDTPGhE~f~~----~r~--r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~ 611 (732)
...++.+.|+||||...... ... ..+..+|.++||+|+..+ ......+..+...-....||+||+|.... .
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTKlD~~~~-g 255 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTKLDGSAK-G 255 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEECCSSCSS-H
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEECCCCccc-c
Confidence 01237899999999432211 111 122457999999999864 23334444444333446799999997532 2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 612 erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
.......... ..|+.+++. |+++++
T Consensus 256 G~~ls~~~~~---------g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 256 GGALSAVAAT---------GAPIKFIGT--GEKIDD 280 (443)
T ss_dssp HHHHHHHHTT---------CCCEEEEEC--SSSTTC
T ss_pred cHHHHHHHHH---------CCCEEEEEc--CCChHH
Confidence 2223333222 357777775 776654
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.35 E-value=6.8e-07 Score=92.64 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=70.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcc-cc-------ccCCceeeeeeEEEEeecC--CcceeEEEEeCCCcccc------
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AA-------EAGGITQGIGAYKVQVPVD--GKLQPCVFLDTPGHEAF------ 555 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~~-vs-------e~~GtTrdI~~y~v~i~id--gk~i~ItLIDTPGhE~f------ 555 (732)
++++|+|+.|+|||||++.|.+.... .+ ..+..+. ...+.+... +-...++++|++|....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~---~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE---IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCS---CCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee---eeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 57999999999999999999853321 11 1111110 011222122 12236899999993110
Q ss_pred -------ch-----h---------h-cccccccCeEEEEEEec-CCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC
Q 004746 556 -------GA-----M---------R-ARGARVTDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG 608 (732)
Q Consensus 556 -------~~-----~---------r-~r~~~~ADiVILVVDas-dgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~ 608 (732)
.. . + ...+..++++++++|-. +++.+.+.+.+..+... +++|+|+||+|...
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCC
Confidence 00 0 0 01123468889999855 78899999999988776 99999999999754
No 219
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.30 E-value=9.5e-07 Score=93.56 Aligned_cols=101 Identities=14% Similarity=-0.018 Sum_probs=71.7
Q ss_pred CCccccchhhcccccccCeEEEEEEecCCCChhhHHHH----HHH---H-hcCCCEEEEEeC-CCCCCC-ChHHHHHHHH
Q 004746 550 PGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAI----AHA---K-AAGVPIVIAINK-IDKDGA-NPERVMQELS 619 (732)
Q Consensus 550 PGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL----~~a---k-~~~vPIIVViNK-iDL~~a-~~erv~~eL~ 619 (732)
.||+.+..+|..|+..+|++|||||++|.......+.+ ..+ . ..++|++|++|| .|++++ ...++.+.+.
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~ 274 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH 274 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC
Confidence 46889999999999999999999999986443333322 222 1 258999999996 588765 4444444433
Q ss_pred HcCCCCCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 620 SIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 620 elgl~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
-..+ . ....++.|||++|+|+.+-++||...
T Consensus 275 L~~l-~----r~W~Iq~csA~tGeGL~EGldWL~~~ 305 (312)
T 3l2o_B 275 LNLL-N----HPWLVQDTEAETLTGFLNGIEWILEE 305 (312)
T ss_dssp GGGG-C----SCEEEEEEETTTCTTHHHHHHHHHHH
T ss_pred CccC-C----CcEEEEecccCCCcCHHHHHHHHHHH
Confidence 2222 1 24579999999999999999999864
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.28 E-value=6.3e-07 Score=99.10 Aligned_cols=160 Identities=20% Similarity=0.170 Sum_probs=87.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC------Ccccc--c-----------------------cCCceeeeeeEEEEeecC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT------KVAAA--E-----------------------AGGITQGIGAYKVQVPVD 538 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~------k~~vs--e-----------------------~~GtTrdI~~y~v~i~id 538 (732)
.+..|+|+|.+|+|||||++.|... ++... + ..+++.+........-..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998642 22110 0 000111100000000001
Q ss_pred CcceeEEEEeCCCccccc----h-hh-cccccccCeEEEEEEecCCCChhhHHHHHHHHhcCC-C-EEEEEeCCCCCCCC
Q 004746 539 GKLQPCVFLDTPGHEAFG----A-MR-ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGV-P-IVIAINKIDKDGAN 610 (732)
Q Consensus 539 gk~i~ItLIDTPGhE~f~----~-~r-~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~v-P-IIVViNKiDL~~a~ 610 (732)
...+.+.|+||||..... . +. ...+..+|.++||+|+..+. .....+..+. ..+ | ..+|+||+|....
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~~~- 253 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLDGSAK- 253 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSSSCST-
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCCCccc-
Confidence 145689999999954321 1 11 12234689999999998753 2333333333 236 6 8999999998532
Q ss_pred hHHHHHHHHHcCCCC---------CCCCCCCCEEEEecCCCCC-HHHHHHHHH
Q 004746 611 PERVMQELSSIGLMP---------EDWGGDIPMVQISALKGEK-VDDLLETIM 653 (732)
Q Consensus 611 ~erv~~eL~elgl~~---------e~~gg~ipiVeVSAKtGeG-IdeLfe~Ii 653 (732)
...........+... .+.....+.+++|+..|.| +..|++.+.
T Consensus 254 ~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~ 306 (432)
T 2v3c_C 254 GGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAE 306 (432)
T ss_dssp THHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTT
T ss_pred hHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHH
Confidence 233333333332210 1111123445678888888 877777664
No 221
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.18 E-value=2.3e-06 Score=94.87 Aligned_cols=143 Identities=20% Similarity=0.229 Sum_probs=80.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc------CCccc-c-ccC--C---------ceeeeeeEEEEe-------------ec
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK------TKVAA-A-EAG--G---------ITQGIGAYKVQV-------------PV 537 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~------~k~~v-s-e~~--G---------tTrdI~~y~v~i-------------~i 537 (732)
.+..|+++|.+|+||||++..|.. .++.. . +.. + ...++.++.... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 466899999999999999998862 22211 0 000 0 000111111100 01
Q ss_pred CCcceeEEEEeCCCccc------cchhhcc--cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC
Q 004746 538 DGKLQPCVFLDTPGHEA------FGAMRAR--GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA 609 (732)
Q Consensus 538 dgk~i~ItLIDTPGhE~------f~~~r~r--~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a 609 (732)
....+.+.|+||||... +...... .+...|.++||+|+..+ ......+..+...-.+..|++||+|.. .
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKlD~~-a 252 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKMDGT-A 252 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECGGGC-S
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEeccccc-c
Confidence 12357899999999533 1111111 12346999999999864 233444454544335688999999975 2
Q ss_pred ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHH
Q 004746 610 NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (732)
Q Consensus 610 ~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGId 646 (732)
............ ..|+.+++. |++++
T Consensus 253 ~~G~als~~~~~---------g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 253 KGGGALSAVVAT---------GATIKFIGT--GEKID 278 (433)
T ss_dssp CHHHHHHHHHHH---------TCEEEEEEC--CSSSS
T ss_pred cchHHHHHHHHH---------CCCEEEEEC--CCChH
Confidence 333334433333 257777775 77764
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.16 E-value=1.6e-06 Score=90.41 Aligned_cols=58 Identities=31% Similarity=0.427 Sum_probs=37.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcCC-ccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~k-~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGh 552 (732)
..++++|+|+|.+|+|||||+|+|.+.. ..++..+|+|++...+.+ + ..+.|+||||.
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~---~~~~l~DtpG~ 175 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV----G---KELELLDTPGI 175 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE----T---TTEEEEECCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe----C---CCEEEEECcCc
Confidence 4567899999999999999999999876 457778899988753322 2 26899999995
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.15 E-value=2.4e-06 Score=89.07 Aligned_cols=100 Identities=16% Similarity=0.202 Sum_probs=65.6
Q ss_pred EEeCCCcc-ccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCC
Q 004746 546 FLDTPGHE-AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGL 623 (732)
Q Consensus 546 LIDTPGhE-~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl 623 (732)
+-+.|||. .........+..+|++|+|+|+.++......++-+.+ .++|+|+|+||+|+.... .+.....+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~-- 78 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVTQQWKEHFENQ-- 78 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHHHHHTT--
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHHHHHHHHHHhc--
Confidence 44679986 3445556778999999999999987665543333332 479999999999996421 11112222221
Q ss_pred CCCCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 004746 624 MPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (732)
Q Consensus 624 ~~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~la 656 (732)
+++++++||++|.|+++|++.|....
T Consensus 79 -------g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 79 -------GIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp -------TCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred -------CCcEEEEECCCcccHHHHHHHHHHHH
Confidence 25799999999999999999887654
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.09 E-value=2.3e-06 Score=98.20 Aligned_cols=102 Identities=22% Similarity=0.199 Sum_probs=61.9
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCC----ceeeeeeEEEEeecCCcceeEEEEeCCCccccch----h
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGG----ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA----M 558 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~G----tTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f~~----~ 558 (732)
+..+..+|+|+|.+|+|||||+|+|++..... ..++ +|.++..+...+. ...+..+.|+||||...... .
T Consensus 34 i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~-~~~~~~i~LiDTpGi~~~~~~~~~~ 111 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLGDVEKGDNQN 111 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBCCGGGCCCTT
T ss_pred ccCCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccc-cCCCceEEEecCCCcCcccccchhH
Confidence 34455789999999999999999999876432 3333 3444433322222 23345799999999543221 0
Q ss_pred hccc--ccccCeEEEEEEecCCCChhhHHHHHHH
Q 004746 559 RARG--ARVTDIAVIVVAADDGIRPQTNEAIAHA 590 (732)
Q Consensus 559 r~r~--~~~ADiVILVVDasdgi~~qt~EiL~~a 590 (732)
.... +...-..++|||+..++..++.+.+..+
T Consensus 112 ~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v 145 (592)
T 1f5n_A 112 DSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYV 145 (592)
T ss_dssp HHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHH
T ss_pred HHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHH
Confidence 0000 1111112678898888888877665543
No 225
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.06 E-value=2.8e-06 Score=91.80 Aligned_cols=97 Identities=18% Similarity=0.131 Sum_probs=65.5
Q ss_pred CccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC--hHHHHHH----HHHcCCC
Q 004746 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN--PERVMQE----LSSIGLM 624 (732)
Q Consensus 551 GhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~--~erv~~e----L~elgl~ 624 (732)
..++|..+...+++.+|++|+|+|+++....+..++.+++ .++|+|+|+||+|+.... .+...+. ....++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~ 132 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK 132 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC
Confidence 3578888888888899999999999873211111121211 378999999999995432 2233333 2333321
Q ss_pred CCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 625 PEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 625 ~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
..+++++||++|.|+++|++.|...
T Consensus 133 ------~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 133 ------PEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp ------CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ------cccEEEEeCCCCcCHHHHHhhhhhh
Confidence 1268999999999999999998653
No 226
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.04 E-value=4.2e-06 Score=90.38 Aligned_cols=97 Identities=22% Similarity=0.197 Sum_probs=67.3
Q ss_pred CccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC--hHHHHHHH----HHcCCC
Q 004746 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN--PERVMQEL----SSIGLM 624 (732)
Q Consensus 551 GhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~--~erv~~eL----~elgl~ 624 (732)
.+++|......++..+|++|+|+|+++....+..++...+ .+.|+|+|+||+|+.... .+...+.+ ...++.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~ 134 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLC 134 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCC
Confidence 3788988888888999999999999985433332332322 278999999999986432 23333332 223321
Q ss_pred CCCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 004746 625 PEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (732)
Q Consensus 625 ~e~~gg~ipiVeVSAKtGeGIdeLfe~Ii~l 655 (732)
...++.+||++|.|+++|++.|...
T Consensus 135 ------~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 135 ------PVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp ------CSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred ------cccEEEEECCCCCCHHHHHHHHHhh
Confidence 1368999999999999999998654
No 227
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.95 E-value=1.4e-05 Score=83.94 Aligned_cols=143 Identities=21% Similarity=0.256 Sum_probs=80.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc------CCcccc--ccCCc-----------eeeeeeEEEEe-------------ecC
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK------TKVAAA--EAGGI-----------TQGIGAYKVQV-------------PVD 538 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~------~k~~vs--e~~Gt-----------TrdI~~y~v~i-------------~id 538 (732)
+..|+++|..|+||||++..|.. .++... +.... ..++.++.... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999998862 222211 10000 00111111000 001
Q ss_pred CcceeEEEEeCCCccc--cch-hhc-----ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCC
Q 004746 539 GKLQPCVFLDTPGHEA--FGA-MRA-----RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGA 609 (732)
Q Consensus 539 gk~i~ItLIDTPGhE~--f~~-~r~-----r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a 609 (732)
...+.+.|+||||... ... ++. ..+..+|.++||+|+..+ .+..+.+..+.. ..+ ..+|+||+|...
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~- 253 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA- 253 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT-
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc-
Confidence 1456899999999655 211 111 134568999999999754 334444444433 467 789999999742
Q ss_pred ChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHH
Q 004746 610 NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (732)
Q Consensus 610 ~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeL 648 (732)
............ ..|+.+++ +|+++++|
T Consensus 254 ~~g~~~~~~~~~---------~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 254 KGGGALSAVAAT---------GATIKFIG--TGEKIDEL 281 (297)
T ss_dssp THHHHHHHHHTT---------TCCEEEEE--CSSSTTCE
T ss_pred chHHHHHHHHHH---------CcCEEEEe--CCCChhhc
Confidence 222233333222 25677776 68888654
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.81 E-value=9.4e-06 Score=83.73 Aligned_cols=56 Identities=27% Similarity=0.509 Sum_probs=37.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCc-cccccCCceeeeeeEEEEeecCCcceeEEEEeCCCccc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~k~-~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~ 554 (732)
.+|+++|.+|+|||||+|+|.+... ..+..+|+|++...+. ++ ..+.||||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~----~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS----LE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE----CT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE----eC---CCEEEEECCCccc
Confidence 7999999999999999999997765 4566778887753222 22 2689999999643
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.70 E-value=1.1e-05 Score=83.37 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=58.5
Q ss_pred CCCccccc-hhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC-hHHHHHHHHHcCCCCC
Q 004746 549 TPGHEAFG-AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPE 626 (732)
Q Consensus 549 TPGhE~f~-~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~-~erv~~eL~elgl~~e 626 (732)
.|||.... ......+..+|++|+|+|+.++.......+ ..+ ++|.|+|+||+|+.+.. .+.....+...+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~~iivlNK~DL~~~~~~~~~~~~~~~~g---- 75 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKETIILLNKVDIADEKTTKKWVEFFKKQG---- 75 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSEEEEEEECGGGSCHHHHHHHHHHHHHTT----
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCCcEEEEECccCCCHHHHHHHHHHHHHcC----
Confidence 48876443 344566789999999999998655432111 112 79999999999996421 112233333322
Q ss_pred CCCCCCCEEEEecCCCCCHHHHHHHHHH
Q 004746 627 DWGGDIPMVQISALKGEKVDDLLETIML 654 (732)
Q Consensus 627 ~~gg~ipiVeVSAKtGeGIdeLfe~Ii~ 654 (732)
+++ .+||++|.|+++|++.|..
T Consensus 76 -----~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 76 -----KRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp -----CCE-EECCTTSCHHHHHHHHCCC
T ss_pred -----CeE-EEECCCCcCHHHHHHHHHH
Confidence 457 9999999999999987653
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.70 E-value=0.00012 Score=78.10 Aligned_cols=146 Identities=23% Similarity=0.277 Sum_probs=79.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC------Ccccc--ccC--C-c------eeeeeeEEEEeecC-------------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVAAA--EAG--G-I------TQGIGAYKVQVPVD------------- 538 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~------k~~vs--e~~--G-t------TrdI~~y~v~i~id------------- 538 (732)
.++-.|+|+|..|+|||||+..|.+. ++... +.. + . ...+++..+.....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 45678999999999999999988632 11110 000 0 0 00011000000000
Q ss_pred --CcceeEEEEeCCCccccchhhcc------cccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCC
Q 004746 539 --GKLQPCVFLDTPGHEAFGAMRAR------GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN 610 (732)
Q Consensus 539 --gk~i~ItLIDTPGhE~f~~~r~r------~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~ 610 (732)
...+.+.++||+|.......... .+-..|-.++++|+..+ .+..+.+..+...--..++++||+|-. ..
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKlD~~-a~ 283 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKLDAD-AR 283 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECGGGC-SC
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCcCCc-cc
Confidence 12346788999995332211111 11246889999998765 234444444432222347889999963 23
Q ss_pred hHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHH
Q 004746 611 PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (732)
Q Consensus 611 ~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeL 648 (732)
.-.....+...+ .|+.+++ +|+++++|
T Consensus 284 ~G~~l~~~~~~~---------~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 284 GGAALSISYVID---------APILFVG--VGQGYDDL 310 (328)
T ss_dssp CHHHHHHHHHHT---------CCEEEEE--CSSSTTCE
T ss_pred hhHHHHHHHHHC---------CCEEEEe--CCCCcccc
Confidence 334444444443 5677777 88887654
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.48 E-value=0.0002 Score=82.24 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=39.7
Q ss_pred eEEEEeCCCcc-------------ccchhhccccc-ccCeEEEEEEecCCCC-hhhHHHHHHHHhcCCCEEEEEeCCCCC
Q 004746 543 PCVFLDTPGHE-------------AFGAMRARGAR-VTDIAVIVVAADDGIR-PQTNEAIAHAKAAGVPIVIAINKIDKD 607 (732)
Q Consensus 543 ~ItLIDTPGhE-------------~f~~~r~r~~~-~ADiVILVVDasdgi~-~qt~EiL~~ak~~~vPIIVViNKiDL~ 607 (732)
.+.|+|.||.- .+..+...++. ...+++++++++.... .....++..+...+.+.|+|+||+|+.
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv 227 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLV 227 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGS
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhc
Confidence 58999999732 11222333343 3456666666554333 233455555555678999999999985
Q ss_pred C
Q 004746 608 G 608 (732)
Q Consensus 608 ~ 608 (732)
.
T Consensus 228 ~ 228 (608)
T 3szr_A 228 D 228 (608)
T ss_dssp S
T ss_pred C
Confidence 4
No 232
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.38 E-value=0.0007 Score=76.32 Aligned_cols=145 Identities=19% Similarity=0.271 Sum_probs=75.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc------CCccc--cccCCc-----------eeeeeeEEEEeec-----------
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK------TKVAA--AEAGGI-----------TQGIGAYKVQVPV----------- 537 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~------~k~~v--se~~Gt-----------TrdI~~y~v~i~i----------- 537 (732)
...+-.|+|+|..|+|||||++.|.+ ..+.. .+.... -+.+.++......
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 34566899999999999999998863 12211 110000 0111111100000
Q ss_pred --CCcceeEEEEeCCCccccch--h-----hccc-----ccccCeEEEEEEecCCCChhhHHHHHHHHh-cCCCEEEEEe
Q 004746 538 --DGKLQPCVFLDTPGHEAFGA--M-----RARG-----ARVTDIAVIVVAADDGIRPQTNEAIAHAKA-AGVPIVIAIN 602 (732)
Q Consensus 538 --dgk~i~ItLIDTPGhE~f~~--~-----r~r~-----~~~ADiVILVVDasdgi~~qt~EiL~~ak~-~~vPIIVViN 602 (732)
...++.+.|+||+|...... + +.+. ....+-+|||+|+..+ ......+..+.. .++ ..+++|
T Consensus 370 ~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~i-tgvIlT 446 (503)
T 2yhs_A 370 AAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGL-TGITLT 446 (503)
T ss_dssp HHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCC-SEEEEE
T ss_pred HHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCC-CEEEEE
Confidence 01346789999999532211 1 1111 1235678999998865 222333443332 333 357899
Q ss_pred CCCCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 603 KIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 603 KiDL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
|+|-. ...-.....+...+ .++.++ -+|+++++
T Consensus 447 KLD~t-akgG~~lsi~~~~~---------~PI~fi--g~Ge~vdD 479 (503)
T 2yhs_A 447 KLDGT-AKGGVIFSVADQFG---------IPIRYI--GVGERIED 479 (503)
T ss_dssp CGGGC-SCCTHHHHHHHHHC---------CCEEEE--ECSSSGGG
T ss_pred cCCCc-ccccHHHHHHHHHC---------CCEEEE--ecCCChhh
Confidence 99953 23333444444433 355553 36777765
No 233
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.36 E-value=0.0011 Score=69.94 Aligned_cols=143 Identities=18% Similarity=0.236 Sum_probs=73.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc------CCcccc--ccC--C-c--------eeeeeeEEEEeec-------------
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK------TKVAAA--EAG--G-I--------TQGIGAYKVQVPV------------- 537 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~------~k~~vs--e~~--G-t--------TrdI~~y~v~i~i------------- 537 (732)
++-.|+|+|+.|+|||||++.|.+ .++... +.. + . ..++.++......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 466899999999999999998862 111110 000 0 0 0112111100000
Q ss_pred CCcceeEEEEeCCCccccch--------hh---cc-cccccCeEEEEEEecCCCChhhHHHHHHHHh-cCCCEEEEEeCC
Q 004746 538 DGKLQPCVFLDTPGHEAFGA--------MR---AR-GARVTDIAVIVVAADDGIRPQTNEAIAHAKA-AGVPIVIAINKI 604 (732)
Q Consensus 538 dgk~i~ItLIDTPGhE~f~~--------~r---~r-~~~~ADiVILVVDasdgi~~qt~EiL~~ak~-~~vPIIVViNKi 604 (732)
....+.+.++||+|...... .+ .+ .....+.+++++|+..+. ...+.+..+.. .++ .++++||.
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~~-t~iivTh~ 257 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVGL-TGVIVTKL 257 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHCC-SEEEEECT
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcCC-cEEEEECC
Confidence 00134578999999432211 01 11 124578889999987552 33344444432 344 57889999
Q ss_pred CCCCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 605 DKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 605 DL~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
|... ..-.+.......+ .|+.++. +|+++++
T Consensus 258 d~~a-~gg~~l~i~~~~~---------~pi~~ig--~Ge~~~d 288 (304)
T 1rj9_A 258 DGTA-KGGVLIPIVRTLK---------VPIKFVG--VGEGPDD 288 (304)
T ss_dssp TSSC-CCTTHHHHHHHHC---------CCEEEEE--CSSSTTC
T ss_pred cccc-cccHHHHHHHHHC---------CCeEEEe--CCCChhh
Confidence 8642 2223333333332 4566655 5666654
No 234
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=97.24 E-value=0.00035 Score=69.69 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=52.6
Q ss_pred CCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC--eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 666 HRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 666 ~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~--~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
+.++...|.+++. +.|++++|+|.+|+|++||.+.+.+ ...+|++|+.+ ++.+++|.||+.|.|
T Consensus 4 ~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~-~~~~~~A~aGd~V~l 69 (204)
T 3e1y_E 4 GSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSD-DVETDTVAPGENLKI 69 (204)
T ss_dssp ---CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSS-SSCBSEECTTSEEEE
T ss_pred CCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEEC-CEEeEEECCCCEEEE
Confidence 4556666666653 8999999999999999999999944 67899999999 589999999999864
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.20 E-value=0.00028 Score=77.99 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=40.5
Q ss_pred cceeEEEEeCCCccccch-hhc-----ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCC
Q 004746 540 KLQPCVFLDTPGHEAFGA-MRA-----RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKD 607 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~-~r~-----r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~ 607 (732)
..+.+.|+||||.-.+.. ... ..+..+|.++||+|+..+. .....+..+.. .++ .-+|+||+|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~-~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFNE-ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHHH-HSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHhc-cCCCeEEEEecCCCC
Confidence 357899999999644321 111 1234689999999998652 23333333322 355 35799999974
No 236
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.17 E-value=0.00018 Score=76.33 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=56.7
Q ss_pred ccccccCeEEEEEEecCCCChhh--HHHHHHHHhcCCCEEEEEeCCCCCCCCh-----HHHHHHHHHcCCCCCCCCCCCC
Q 004746 561 RGARVTDIAVIVVAADDGIRPQT--NEAIAHAKAAGVPIVIAINKIDKDGANP-----ERVMQELSSIGLMPEDWGGDIP 633 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt--~EiL~~ak~~~vPIIVViNKiDL~~a~~-----erv~~eL~elgl~~e~~gg~ip 633 (732)
..+.++|.+++|+|+.++..... ..++..+...++|.|+|+||+||..... +.+...+...+ ++
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g---------~~ 152 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG---------YD 152 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT---------CC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC---------Ce
Confidence 45688999999999986543332 2233344557899999999999965422 22233333333 57
Q ss_pred EEEEecCCCCCHHHHHHH
Q 004746 634 MVQISALKGEKVDDLLET 651 (732)
Q Consensus 634 iVeVSAKtGeGIdeLfe~ 651 (732)
++.+||++|.|+++|++.
T Consensus 153 v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EEECCHHHHTTCTTTGGG
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 999999999999887754
No 237
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.11 E-value=0.0028 Score=67.30 Aligned_cols=93 Identities=20% Similarity=0.210 Sum_probs=50.5
Q ss_pred cceeEEEEeCCCccccch--hhc----------ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCC
Q 004746 540 KLQPCVFLDTPGHEAFGA--MRA----------RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDK 606 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~--~r~----------r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL 606 (732)
..+.+.|+||||.-.... +.. .....+|.++||+|+..+ ....+.+..+.. ..+ .=+|+||+|.
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~-~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSK-VADVSGIILTKMDS 266 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTT-TSCCCEEEEECGGG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhh-cCCCcEEEEeCCCC
Confidence 357899999999543211 100 011347899999999853 223333322221 233 3478999996
Q ss_pred CCCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 607 DGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 607 ~~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
... ...........+ .|+.++. .|+++++
T Consensus 267 ~~~-~g~~~~~~~~~~---------~Pi~~i~--~Ge~~~d 295 (320)
T 1zu4_A 267 TSK-GGIGLAIKELLN---------IPIKMIG--VGEKVDD 295 (320)
T ss_dssp CSC-TTHHHHHHHHHC---------CCEEEEE--CSSSTTC
T ss_pred CCc-hhHHHHHHHHHC---------cCEEEEe--CCCCccc
Confidence 432 234444444443 3555543 5666654
No 238
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.06 E-value=0.00071 Score=75.30 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=54.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC---------------C---cccc-ccCCceeeeeeEEE--Eee-cCCcceeEEEEe
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT---------------K---VAAA-EAGGITQGIGAYKV--QVP-VDGKLQPCVFLD 548 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~---------------k---~~vs-e~~GtTrdI~~y~v--~i~-idgk~i~ItLID 548 (732)
-..|+|+|.+++|||||||+|++. . +... .....|.+|-.+.. ... .++....+.|+|
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 346999999999999999999853 1 2111 12234555433211 111 145567899999
Q ss_pred CCCccccch-----hhcccc--cccCeEEEEEEecCCCChhhHHHHHH
Q 004746 549 TPGHEAFGA-----MRARGA--RVTDIAVIVVAADDGIRPQTNEAIAH 589 (732)
Q Consensus 549 TPGhE~f~~-----~r~r~~--~~ADiVILVVDasdgi~~qt~EiL~~ 589 (732)
|+|...-.. .+...+ -.+++ +||.+...+.....+.+..
T Consensus 147 TeG~~~~~~~~~~d~~ifal~~lLSs~--~IyN~~~~i~~~~l~~L~~ 192 (447)
T 3q5d_A 147 TQGTFDSQSTLRDSATVFALSTMISSI--QVYNLSQNVQEDDLQHLQL 192 (447)
T ss_dssp EECCCSSHHHHHHHHHHHHHHHHHCSE--EEEEESSSCCHHHHHHHHH
T ss_pred CCcccccccchhhhHHHHHHHHHHhhH--HHHhhcccccHHHHHHHHH
Confidence 999432211 001111 22454 4555566666666665544
No 239
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.04 E-value=0.0025 Score=66.77 Aligned_cols=130 Identities=17% Similarity=0.121 Sum_probs=65.2
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc------C-Cccc--cccCCce-----------eeeeeEEEE--------eecCC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK------T-KVAA--AEAGGIT-----------QGIGAYKVQ--------VPVDG 539 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~------~-k~~v--se~~GtT-----------rdI~~y~v~--------i~idg 539 (732)
..++..|+|+|..|+||||++..|.. . ++.. .+....+ .++..+... +. ..
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~ 180 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF 180 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh
Confidence 34677899999999999999998752 1 1111 0000000 000000000 00 01
Q ss_pred cceeEEEEeCCCccccchh----hcccc--cccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCChHH
Q 004746 540 KLQPCVFLDTPGHEAFGAM----RARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER 613 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~----r~r~~--~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL~~a~~er 613 (732)
..+.+.|+||||....... ....+ ...|.+++|+|++.+. ....++...+...++ .-+++||+|... ....
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~-~giVltk~D~~~-~~g~ 257 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPV-NQYIFTKIDETT-SLGS 257 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCC-CEEEEECTTTCS-CCHH
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCC-CEEEEeCCCccc-chhH
Confidence 3568999999996443221 11112 2367789999887542 111122222221222 346679999753 2334
Q ss_pred HHHHHHHc
Q 004746 614 VMQELSSI 621 (732)
Q Consensus 614 v~~eL~el 621 (732)
....+...
T Consensus 258 ~~~~~~~~ 265 (296)
T 2px0_A 258 VFNILAES 265 (296)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHH
Confidence 44444443
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.00 E-value=0.006 Score=64.44 Aligned_cols=93 Identities=25% Similarity=0.277 Sum_probs=49.8
Q ss_pred ceeEEEEeCCCccccchhh-------ccc----c-cccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCC
Q 004746 541 LQPCVFLDTPGHEAFGAMR-------ARG----A-RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKD 607 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r-------~r~----~-~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~ 607 (732)
.+.+.|+||||........ .+. + ...|.++||+|+..+ ....+.+..+... .+ .-+|+||+|-.
T Consensus 186 ~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~-~~i~gvVlTk~D~~ 262 (306)
T 1vma_A 186 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEA-VNVTGIILTKLDGT 262 (306)
T ss_dssp TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHH-SCCCEEEEECGGGC
T ss_pred CCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhc-CCCCEEEEeCCCCc
Confidence 4579999999952221110 011 1 347889999998732 2222333333222 33 45678999964
Q ss_pred CCChHHHHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHHH
Q 004746 608 GANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (732)
Q Consensus 608 ~a~~erv~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIdeL 648 (732)
. ............+ .|+.+++ +|+.+++|
T Consensus 263 ~-~gG~~l~~~~~~~---------~Pi~~i~--~Ge~~~dl 291 (306)
T 1vma_A 263 A-KGGITLAIARELG---------IPIKFIG--VGEKAEDL 291 (306)
T ss_dssp S-CTTHHHHHHHHHC---------CCEEEEE--CSSSGGGE
T ss_pred c-chHHHHHHHHHHC---------CCEEEEe--CCCChhhc
Confidence 3 3333444444443 4666664 45556553
No 241
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.73 E-value=0.0036 Score=59.90 Aligned_cols=79 Identities=13% Similarity=0.107 Sum_probs=55.3
Q ss_pred ceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhc-----CCCEEEEEeCCCCCCCChHHHH
Q 004746 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA-----GVPIVIAINKIDKDGANPERVM 615 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~-----~vPIIVViNKiDL~~a~~erv~ 615 (732)
.+.+.|+|||+.- .......+..+|.+|+++..+... ......++.+... +.++.+|+|++|........+.
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~ 151 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLK 151 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHH
Confidence 4789999999864 233344567799999999887666 6666666666543 4678999999996443344555
Q ss_pred HHHHHcC
Q 004746 616 QELSSIG 622 (732)
Q Consensus 616 ~eL~elg 622 (732)
+.+..++
T Consensus 152 ~~l~~~~ 158 (206)
T 4dzz_A 152 ESIKDTG 158 (206)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 5565544
No 242
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.72 E-value=0.003 Score=68.33 Aligned_cols=86 Identities=19% Similarity=0.135 Sum_probs=52.5
Q ss_pred ccccccCeEEEEEEecCCCChhh-HHHHHHHHhcCCCEEEEEeCCCCCCCChH-HHHHHHHHcCCCCCCCCCCCCEEEEe
Q 004746 561 RGARVTDIAVIVVAADDGIRPQT-NEAIAHAKAAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQIS 638 (732)
Q Consensus 561 r~~~~ADiVILVVDasdgi~~qt-~EiL~~ak~~~vPIIVViNKiDL~~a~~e-rv~~eL~elgl~~e~~gg~ipiVeVS 638 (732)
..+.++|.+++|++..-...... ..++..+...++|.|+|+||+||...... .....+..+. . ..++++.+|
T Consensus 126 ~i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~----~--~G~~v~~~S 199 (358)
T 2rcn_A 126 PIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR----N--IGYRVLMVS 199 (358)
T ss_dssp EEEECCCEEEEEEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH----T--TTCCEEECB
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHH----h--CCCcEEEEe
Confidence 34588999998755432222222 22333345578999999999999643211 1222222110 1 135799999
Q ss_pred cCCCCCHHHHHHHH
Q 004746 639 ALKGEKVDDLLETI 652 (732)
Q Consensus 639 AKtGeGIdeLfe~I 652 (732)
|.+|.|+++|...+
T Consensus 200 a~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 200 SHTQDGLKPLEEAL 213 (358)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred cCCCcCHHHHHHhc
Confidence 99999999988654
No 243
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=96.32 E-value=0.0094 Score=55.00 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=50.4
Q ss_pred CCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEEcC-eeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 666 HRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE-AFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 666 ~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~G~-~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
..++...++...---. |+++.|+|..|+|++|+.+ =+. ..+.|++|+++ ++.+++|.||+.|.|
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V-Pg~~~vg~VkSIE~~-~e~v~eA~~GdnVai 96 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV-KGPSGIGGIVRIERN-REKVEFAIAGDRIGI 96 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE-ECSSCEEEEEEEEET-TEEESEEETTCEEEE
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc-CCCceEEEEEEEEEC-CcCcCCcCCCCEEEE
Confidence 3455555555221123 8899999999999999999 555 57999999998 689999999999975
No 244
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.32 E-value=0.00055 Score=75.76 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=64.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCCccccccCCceeeeeeEEEEeecCCcceeEEEEeCCCcccc--chhh-------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF--GAMR------- 559 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k~~vse~~GtTrdI~~y~v~i~idgk~i~ItLIDTPGhE~f--~~~r------- 559 (732)
..+.+|+++|.+|+|||||..+|....... ..-|..+....+.....+......|||+.|.+.| ...+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~---~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~ 113 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI---GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALND 113 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc---CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 446689999999999999999987532110 0012111100000111122234467899997432 2222
Q ss_pred -cccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCC
Q 004746 560 -ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (732)
Q Consensus 560 -~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiD 605 (732)
..++..+++.++|+|+++........++..++..+.+++++-..|+
T Consensus 114 ~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~ 160 (469)
T 1bif_A 114 VRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV 160 (469)
T ss_dssp HHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred HHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECC
Confidence 2344457888999999876444444455556666666666655554
No 245
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.21 E-value=0.0074 Score=63.08 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=47.3
Q ss_pred ceeEEEEeCCCccccc--hhhc----ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCChHH
Q 004746 541 LQPCVFLDTPGHEAFG--AMRA----RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPER 613 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~--~~r~----r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~~a~~er 613 (732)
.+.+.|+||||.-... .+.. ...-.+|.+++|+|+..+ ....+.+..+.. ..+ .-+|+||+|... ....
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~-~~g~ 255 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-RGGA 255 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS-SCHH
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc-cHHH
Confidence 4689999999853221 1111 011247889999998743 333333333322 244 457899999743 2334
Q ss_pred HHHHHHHcCCCCCCCCCCCCEEEEecCCCCCHHH
Q 004746 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (732)
Q Consensus 614 v~~eL~elgl~~e~~gg~ipiVeVSAKtGeGIde 647 (732)
........+ .|+.+++ +|+++++
T Consensus 256 ~~~~~~~~~---------~pi~~i~--~g~~~~d 278 (295)
T 1ls1_A 256 ALSARHVTG---------KPIYFAG--VSEKPEG 278 (295)
T ss_dssp HHHHHHHHC---------CCEEEEC--------C
T ss_pred HHHHHHHHC---------cCEEEEe--CCCCccc
Confidence 444444433 4566654 4565654
No 246
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.20 E-value=0.012 Score=57.88 Aligned_cols=81 Identities=17% Similarity=0.055 Sum_probs=52.9
Q ss_pred cceeEEEEeCCCc-cccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhc-CCCEEEEEeCCCCCC-CChHHHHH
Q 004746 540 KLQPCVFLDTPGH-EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA-GVPIVIAINKIDKDG-ANPERVMQ 616 (732)
Q Consensus 540 k~i~ItLIDTPGh-E~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~-~vPIIVViNKiDL~~-a~~erv~~ 616 (732)
..+.+.|+|||+. ... .....+..+|.+|+++..+..........++.+... +.++.+++|++|... .....+.+
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~ 143 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQ 143 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHH
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHH
Confidence 3578999999986 332 233455789999999977643333444555555552 678999999999754 33444555
Q ss_pred HHHHcC
Q 004746 617 ELSSIG 622 (732)
Q Consensus 617 eL~elg 622 (732)
.+.+.+
T Consensus 144 ~l~~~g 149 (209)
T 3cwq_A 144 LLTTAG 149 (209)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 555544
No 247
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.08 E-value=0.0058 Score=67.54 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=62.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc------CCccc--cccCCc-----------eeeeeeEEEEe-------------ec
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK------TKVAA--AEAGGI-----------TQGIGAYKVQV-------------PV 537 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~------~k~~v--se~~Gt-----------TrdI~~y~v~i-------------~i 537 (732)
.+..|+|+|..|+||||++..|.. .++.. .+.... ..++.++.... ..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 456789999999999999988752 11111 000000 01111121100 00
Q ss_pred CCcceeEEEEeCCCccccch-hhc-----ccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCC
Q 004746 538 DGKLQPCVFLDTPGHEAFGA-MRA-----RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKD 607 (732)
Q Consensus 538 dgk~i~ItLIDTPGhE~f~~-~r~-----r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~ 607 (732)
....+.+.|+||||.-.... ... ..+-.+|.++||+|+..+ ......+..+.. .++ .-||+||+|..
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 01356799999999543221 111 112358999999999754 223333333332 244 56789999964
No 248
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.66 E-value=0.011 Score=65.91 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=57.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc------------------CCcccc-ccCCceeeeeeEEEE--ee-cCCcceeEEEEeC
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK------------------TKVAAA-EAGGITQGIGAYKVQ--VP-VDGKLQPCVFLDT 549 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~------------------~k~~vs-e~~GtTrdI~~y~v~--i~-idgk~i~ItLIDT 549 (732)
..|+|+|..++|||+|+|.|+. ..|..+ .....|.+|-.+... +. .++..+.+.|+||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 4688999999999999996641 223321 223457776554321 11 2567788999999
Q ss_pred CCccccchh-----hcc--cccccCeEEEEEEecCCCChhhHHHHHHH
Q 004746 550 PGHEAFGAM-----RAR--GARVTDIAVIVVAADDGIRPQTNEAIAHA 590 (732)
Q Consensus 550 PGhE~f~~~-----r~r--~~~~ADiVILVVDasdgi~~qt~EiL~~a 590 (732)
.|..+.... +.. ..-.+++ +||.....+..+.++.+..+
T Consensus 148 EG~~d~~~~~~~d~~ifaLa~LLSS~--~IyN~~~~i~~~~L~~L~~~ 193 (457)
T 4ido_A 148 QGTFDSQSTLRDSATVFALSTMISSI--QVYNLSQNVQEDDLQHLQLF 193 (457)
T ss_dssp CCBTCTTCCHHHHHHHHHHHHHHCSE--EEEEEESSCCHHHHHHHHHH
T ss_pred cCCCCcccCccccHHHHHHHHHHhhh--eeecccccCCHHHHHHHHHH
Confidence 994332111 111 1122444 44555566777777766543
No 249
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.07 E-value=0.0069 Score=64.16 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
+..++|+|++|+|||||+|.|.+.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 568999999999999999999854
No 250
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.01 E-value=0.033 Score=58.19 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHH
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl 512 (732)
+..++|+|++|+|||||+|.|.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 251
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.49 E-value=0.079 Score=54.47 Aligned_cols=65 Identities=26% Similarity=0.198 Sum_probs=41.0
Q ss_pred ceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHh----cCCCEE-EEEeCCCC
Q 004746 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKA----AGVPIV-IAINKIDK 606 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~----~~vPII-VViNKiDL 606 (732)
.+.+.|+|||+.-.... ....+..+|.+|+|+..+..........+..+.. .+++++ +|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 47899999988433221 1234578999999997653222333344555543 345554 99999984
No 252
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.46 E-value=0.022 Score=61.57 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCC
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTK 515 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k 515 (732)
+-.++|+|++|+|||||+|.|.+..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4589999999999999999999654
No 253
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.64 E-value=0.032 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=20.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.+..++|+|++|+|||||++.|.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999975
No 254
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.59 E-value=0.042 Score=52.34 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=21.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.+..++|+|++|+|||||++.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999853
No 255
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.44 E-value=0.049 Score=53.23 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=23.8
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
|..++..|+|+|++|+|||||++.|...
T Consensus 4 m~~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 4 MTERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp -CCCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred ccCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3456778999999999999999999864
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.40 E-value=0.049 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.+..|+|+|++|+|||||++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4568999999999999999999853
No 257
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.16 E-value=0.062 Score=55.94 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCC
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTK 515 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k 515 (732)
+..++|+|++|+|||||+|.|.+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3578999999999999999998643
No 258
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.09 E-value=0.058 Score=50.97 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+..|+|+|.+|+|||||++.|.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999864
No 259
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.98 E-value=0.054 Score=52.32 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcC
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
+++|+|++|+|||||++.|.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 260
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.96 E-value=0.059 Score=53.71 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=21.6
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHH
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl 512 (732)
+..++..|+|+|.+|+|||||++.|.
T Consensus 23 ~~~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 23 MASKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp ---CCCEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 44567799999999999999999998
No 261
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.92 E-value=0.059 Score=53.57 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=27.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCc--cccccCCceeee
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV--AAAEAGGITQGI 528 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~k~--~vse~~GtTrdI 528 (732)
++..|+|+|++|+|||||+++|+.... .......+|+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p 58 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPP 58 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCC
Confidence 566799999999999999999985421 222334455543
No 262
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.82 E-value=0.052 Score=52.81 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=22.5
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..++..|+|+|++|+|||||++.|.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35567899999999999999998864
No 263
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.80 E-value=0.064 Score=52.17 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=22.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345668999999999999999999753
No 264
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.76 E-value=0.11 Score=56.67 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.2
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
...+..|+|+|.+|+|||||...|..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34466799999999999999999875
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.50 E-value=0.078 Score=50.50 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+..|+|+|.+|+|||||++.|...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34668999999999999999999764
No 266
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.43 E-value=0.076 Score=50.41 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=23.5
Q ss_pred hcccCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 485 ~~l~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
+.+..++..|+|+|.+|+||||+.+.|...
T Consensus 2 ~~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 2 GHEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp ----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 445667789999999999999999999754
No 267
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.40 E-value=0.063 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..++|+|+.|+|||||++.|.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999853
No 268
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.36 E-value=0.077 Score=53.03 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=22.6
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
+..+-.++|+|+.|+|||||++.|.+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 456778999999999999999999864
No 269
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.32 E-value=1.2 Score=42.75 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.+..++|.|++|+|||+|+..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999875
No 270
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.32 E-value=0.075 Score=51.23 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
++..|+|+|..|+|||||++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 271
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.24 E-value=0.071 Score=52.68 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+-.++|+|+.|+|||||++.|.+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45667999999999999999999863
No 272
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.06 E-value=0.094 Score=50.91 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+.+|+|+|.+|+|||||++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 273
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.82 E-value=0.091 Score=48.80 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+..|+|+|.+|+|||||++.|..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 274
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.58 E-value=0.11 Score=50.07 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..+..|+|+|.+|+|||||++.|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999864
No 275
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.54 E-value=0.23 Score=50.03 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=45.9
Q ss_pred cceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEE-EEEeCCCC
Q 004746 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDK 606 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPII-VViNKiDL 606 (732)
..+.+.|+|||+.-.........+..+|.+|+|+..+..........++.++..+++++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 34679999999853321111112235899999998776555555666777777788977 99999874
No 276
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.48 E-value=0.11 Score=50.00 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=22.2
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+...+..|+|+|.+|+|||||+..|..
T Consensus 14 m~~~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 14 VRRFPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp -CCCSSCEEEECSTTSCHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334466899999999999999999864
No 277
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.46 E-value=0.11 Score=50.22 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.6
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+-++..|+|+|.+|+|||||++.|..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999975
No 278
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.45 E-value=0.11 Score=49.14 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.7
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..++..|+|+|.+|+||||+...|..
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999863
No 279
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.24 E-value=0.12 Score=47.14 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=18.8
Q ss_pred CEEEEEeCCCCCHHHHHHHH
Q 004746 492 PVLTIMGHVDHGKTTLLDHI 511 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrL 511 (732)
+.|+|+|.+|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 280
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.11 E-value=0.13 Score=49.69 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.2
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+...+..|+|+|.+|+|||||++.|..
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677899999999999999998864
No 281
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.83 E-value=0.13 Score=51.72 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=23.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 455678999999999999999999764
No 282
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.76 E-value=0.13 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHH
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl 512 (732)
++-.++|+|++|+|||||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45579999999999999999755
No 283
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.75 E-value=0.11 Score=51.00 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEeCCCCCHHHHHHHHHcC
Q 004746 494 LTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 494 VaIVG~~nvGKSSLLnrLl~~ 514 (732)
|+|+|++|+|||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999853
No 284
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.73 E-value=0.17 Score=48.18 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
++..|+|+|.+|+||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999764
No 285
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.69 E-value=0.15 Score=47.98 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.+..|+|+|.+|+||||+...|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 286
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.57 E-value=0.15 Score=48.52 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK 515 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k 515 (732)
..+-.++++|+.|+|||||++.|.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455689999999999999999998643
No 287
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.49 E-value=0.15 Score=50.87 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+-.++|+|+.|+|||||++.|.+-
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45567999999999999999998764
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.48 E-value=0.15 Score=47.27 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=20.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 289
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.48 E-value=0.15 Score=47.61 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=20.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.+..|+|+|.+|+|||||++.|..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 290
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.34 E-value=0.17 Score=48.70 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..++..|+|+|.+|+|||||...|..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34566899999999999999999863
No 291
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.25 E-value=0.15 Score=48.23 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.++|+|.+|+|||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999974
No 292
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.25 E-value=0.16 Score=51.18 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=23.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 455668999999999999999999764
No 293
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.24 E-value=0.16 Score=46.70 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.|+|+|.+|+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 294
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.13 E-value=0.17 Score=51.89 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 455668999999999999999999764
No 295
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.12 E-value=0.16 Score=53.48 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.8
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..++..|+|+|++|+|||||++.|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45677899999999999999998874
No 296
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.09 E-value=0.18 Score=48.73 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.+.++|+|.+|+|||||+++|...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 468999999999999999999853
No 297
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.04 E-value=0.19 Score=48.02 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=22.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.++..|+|+|.+|+||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4577899999999999999999874
No 298
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.01 E-value=0.21 Score=47.75 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.++..|+|.|.+|+||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5678899999999999999999874
No 299
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.96 E-value=0.2 Score=48.29 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=22.9
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+..|+|+|.+|+|||||++.|...
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344568999999999999999999864
No 300
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.95 E-value=0.18 Score=47.08 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+..|+|.|.+|+||||+++.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 301
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.79 E-value=0.18 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=21.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
-.++|+|+.|+|||||++.|.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999864
No 302
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.78 E-value=0.17 Score=51.12 Aligned_cols=27 Identities=15% Similarity=0.377 Sum_probs=23.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345568999999999999999999864
No 303
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.77 E-value=0.19 Score=53.06 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.5
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
-...+-.++|+|++|+|||||++.|.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 356677899999999999999999874
No 304
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.77 E-value=0.18 Score=49.23 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.9
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHH
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl 512 (732)
..++-.++|+|++|+|||||++.|.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3456689999999999999999887
No 305
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.76 E-value=0.18 Score=50.47 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=22.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+-.++|+|+.|+|||||++.|.+-
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45668999999999999999999864
No 306
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.75 E-value=0.13 Score=50.51 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=18.2
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHH-cC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIR-KT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl-~~ 514 (732)
...+..|+|+|+.|+|||||++.|. +.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC--
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3456789999999999999999998 54
No 307
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.72 E-value=0.19 Score=47.17 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
...|+|+|.+|+||||+...|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999863
No 308
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.71 E-value=0.19 Score=51.48 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=23.5
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 456678999999999999999999864
No 309
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.69 E-value=0.18 Score=50.30 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
...+..|+|+|..|+|||||++.|.+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34566899999999999999999865
No 310
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.57 E-value=0.19 Score=51.28 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345568999999999999999999764
No 311
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.56 E-value=0.16 Score=47.68 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
++..|+|+|.+|+||||+...|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999863
No 312
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.50 E-value=0.21 Score=47.78 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.+|+|+|.+|+|||||++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999875
No 313
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.49 E-value=0.2 Score=48.30 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=22.5
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
...+-.++|+|++|+|||||+..|..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999999976
No 314
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.46 E-value=0.22 Score=51.09 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=23.6
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455668999999999999999999874
No 315
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.45 E-value=0.2 Score=51.52 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.2
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 455668999999999999999999764
No 316
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.32 E-value=0.22 Score=50.52 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+-.++|+|+.|+|||||++.|.+-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45568999999999999999999874
No 317
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.31 E-value=0.23 Score=50.11 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=22.9
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHH
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl 512 (732)
+...+..|+|+|.+|+|||||++.|.
T Consensus 23 m~~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 23 MTAIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CTTTSCEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 34567799999999999999999997
No 318
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.31 E-value=0.2 Score=50.86 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345668999999999999999999764
No 319
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.27 E-value=0.21 Score=47.12 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.|+|+|.+|+|||||+..|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999874
No 320
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.25 E-value=0.21 Score=51.46 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.4
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 455668999999999999999999764
No 321
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.19 E-value=0.22 Score=51.02 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 455668999999999999999999864
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.18 E-value=0.21 Score=47.49 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=21.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
++..|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
No 323
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.16 E-value=0.21 Score=50.37 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=22.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+-.++|+|+.|+|||||++.|.+-
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45568999999999999999999864
No 324
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.11 E-value=0.23 Score=48.00 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=22.2
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..++..|+|+|.+|+|||||++.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 325
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.11 E-value=0.23 Score=46.39 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.|+|+|.+|+||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 326
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.07 E-value=0.24 Score=46.16 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 327
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.05 E-value=0.22 Score=51.70 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 345668999999999999999999763
No 328
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.05 E-value=0.21 Score=51.35 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 345668999999999999999999864
No 329
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.03 E-value=0.17 Score=50.12 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.+-.++|+|+.|+|||||++.|.+-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3557999999999999999999865
No 330
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.93 E-value=0.23 Score=50.92 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.2
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 445668999999999999999999764
No 331
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.90 E-value=0.2 Score=47.14 Aligned_cols=25 Identities=32% Similarity=0.252 Sum_probs=21.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.+..++|+|++|+|||||+..+.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998753
No 332
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.89 E-value=2.4 Score=40.83 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=27.4
Q ss_pred CeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCC
Q 004746 567 DIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDK 606 (732)
Q Consensus 567 DiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL 606 (732)
+.-++++|=-+.+.+...+.+..+...++++|+.+...|-
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~f 115 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTH 115 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeecccc
Confidence 4557777765555455666666555568899998987773
No 333
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.88 E-value=0.26 Score=46.85 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.++.+|+|+|.+|+||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999998754
No 334
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.86 E-value=0.2 Score=49.96 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+-.++|+|+.|+|||||++.|.+-
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34557999999999999999999764
No 335
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.81 E-value=0.23 Score=46.39 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+..|+|+|.+|+||||+...|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999998863
No 336
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.73 E-value=0.22 Score=48.71 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+++|+|+.|+|||||++.|.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999999875
No 337
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.72 E-value=0.26 Score=47.99 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
++..|+|+|.+|+||||+...|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
No 338
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.68 E-value=0.26 Score=48.32 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=20.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHH
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl 512 (732)
.++..|+|+|.+|+||||+...|.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999986
No 339
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.67 E-value=0.24 Score=50.78 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..+-.++|+|+.|+|||||++.|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4556799999999999999999875
No 340
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.63 E-value=0.24 Score=50.50 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=22.9
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345567999999999999999999764
No 341
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.57 E-value=0.26 Score=46.29 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.++..|+|+|.+|+||||+...|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3456899999999999999999863
No 342
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.51 E-value=0.24 Score=51.29 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345668999999999999999999864
No 343
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.50 E-value=0.26 Score=51.36 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.++..|+|+|..|+|||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
No 344
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.37 E-value=0.19 Score=52.72 Aligned_cols=129 Identities=19% Similarity=0.240 Sum_probs=66.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC------Cccc-c-ccCCc-----------eeeeeeEEEEee-cC----------
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVAA-A-EAGGI-----------TQGIGAYKVQVP-VD---------- 538 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~------k~~v-s-e~~Gt-----------TrdI~~y~v~i~-id---------- 538 (732)
..+-.++|+|..|+|||||+..|.+. ++.. + +.... -.++.++..... ..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~ 177 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 177 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence 45568999999999999999988631 1111 0 00000 001211110000 00
Q ss_pred ---CcceeEEEEeCCCccccchh--------h---ccc-ccccCeEEEEEEecCCCChhhHHHHHHHH-hcCCCEEEEEe
Q 004746 539 ---GKLQPCVFLDTPGHEAFGAM--------R---ARG-ARVTDIAVIVVAADDGIRPQTNEAIAHAK-AAGVPIVIAIN 602 (732)
Q Consensus 539 ---gk~i~ItLIDTPGhE~f~~~--------r---~r~-~~~ADiVILVVDasdgi~~qt~EiL~~ak-~~~vPIIVViN 602 (732)
.......++||.|...+... + .+. +...+-++||+|++.+..... .+..+. ..++ .+++++
T Consensus 178 ~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~g~-t~iiiT 254 (302)
T 3b9q_A 178 RGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVGI-TGLILT 254 (302)
T ss_dssp HHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTCC-CEEEEE
T ss_pred HHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhcCC-CEEEEe
Confidence 01235689999995432211 1 111 245677899999776654332 233333 3344 467789
Q ss_pred CCCCCCCChHHHHHHHHHc
Q 004746 603 KIDKDGANPERVMQELSSI 621 (732)
Q Consensus 603 KiDL~~a~~erv~~eL~el 621 (732)
|.|-. .............
T Consensus 255 hlD~~-~~~g~~l~~~~~~ 272 (302)
T 3b9q_A 255 KLDGS-ARGGCVVSVVEEL 272 (302)
T ss_dssp CCSSC-SCTHHHHHHHHHH
T ss_pred CCCCC-CccChheehHHHH
Confidence 98864 3344444444443
No 345
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.26 E-value=0.3 Score=46.21 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.++..|+|+|.+|+||||++..|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
No 346
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.23 E-value=0.31 Score=46.69 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=22.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
...+..|+|+|.+|+||||+...|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44566899999999999999999864
No 347
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.20 E-value=0.28 Score=47.83 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
++..|+|+|.+|+||||+...|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
No 348
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.13 E-value=0.27 Score=50.17 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=22.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+-.++|+|+.|+|||||++.|.+-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45567999999999999999999864
No 349
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.11 E-value=0.27 Score=47.22 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 350
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.07 E-value=0.28 Score=47.58 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
++..|+|.|.+|+||||+++.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 351
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.04 E-value=0.29 Score=51.09 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=23.4
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 456678999999999999999999764
No 352
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.89 E-value=0.33 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+..|+|+|.+|+||||+...|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999864
No 353
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.87 E-value=0.16 Score=48.92 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=20.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..|+|+|.+|+|||||++.|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=87.62 E-value=0.3 Score=51.95 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..+++.|+|+|.+|+|||||++.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998853
No 355
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.59 E-value=0.34 Score=46.94 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.+.|+|+|..|+|||||+.+|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 356
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.54 E-value=0.3 Score=50.86 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.++..|+|+|.+|+|||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998763
No 357
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.46 E-value=1.5 Score=48.82 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...++|.|++|+|||+|+.+|...
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 358
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.42 E-value=0.31 Score=46.97 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+|+|+|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999953
No 359
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.34 E-value=0.39 Score=43.91 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.+..++|.|.+|+|||+|+..+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999988753
No 360
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.31 E-value=0.36 Score=46.07 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.++..|+|+|.+|+||||+...|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999873
No 361
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.27 E-value=0.34 Score=48.56 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.9
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..++.+|+|+|.+|+||||+...|..
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999964
No 362
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=87.23 E-value=0.33 Score=45.55 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
++..|+|+|.+|+||||+++.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999865
No 363
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=87.18 E-value=0.81 Score=46.10 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=27.0
Q ss_pred CeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCC
Q 004746 567 DIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDK 606 (732)
Q Consensus 567 DiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL 606 (732)
+.-++++|--.-+.....+.+..+...++++|+++-..|-
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNF 128 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCT
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 3446677755545445555666655568999999988884
No 364
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.16 E-value=0.3 Score=50.27 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCC
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKTK 515 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~k 515 (732)
+-.++|+|+.|+|||||++.|.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999998643
No 365
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.06 E-value=0.27 Score=45.90 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=16.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
++..|+|+|.+|+||||+...|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
No 366
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.01 E-value=0.26 Score=48.80 Aligned_cols=26 Identities=38% Similarity=0.620 Sum_probs=22.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.++..|+|+|..|+|||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999998764
No 367
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.99 E-value=0.23 Score=52.35 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.4
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 456778999999999999999998753
No 368
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=86.92 E-value=0.58 Score=47.99 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=48.1
Q ss_pred ceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEE-EEEeCCCCC
Q 004746 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDKD 607 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPII-VViNKiDL~ 607 (732)
.+.+.|+|||+.-.... ....+..+|.+|+|+.............++.+...+.+++ +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 36799999998543221 1223367899999999887666667777777877788866 999999963
No 369
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=86.90 E-value=0.35 Score=46.73 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+|+|+|.+|+||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999963
No 370
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.89 E-value=0.31 Score=45.55 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.+..++|+|++|+|||||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999998763
No 371
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.73 E-value=0.28 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.-+++|+|..|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
No 372
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.73 E-value=0.47 Score=44.47 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
-..+|+|+.|+|||||+++|..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999863
No 373
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.71 E-value=0.34 Score=51.82 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=23.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.|+|+|..|+|||||++.|.+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 345668999999999999999999864
No 374
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.58 E-value=0.27 Score=51.44 Aligned_cols=25 Identities=40% Similarity=0.513 Sum_probs=21.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
+.+.++|+|..|+|||||++.|.+.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3467899999999999999999854
No 375
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.54 E-value=0.43 Score=45.67 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.++-.++|+|++|+|||||+..|..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999999874
No 376
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=86.45 E-value=0.37 Score=48.75 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
++..|+|+|.+|+||||+...|..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
No 377
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.45 E-value=0.23 Score=53.61 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHH
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl 512 (732)
..+-.|+|+|..|+|||||+..|.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHH
Confidence 355689999999999999999886
No 378
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.37 E-value=0.44 Score=51.49 Aligned_cols=27 Identities=37% Similarity=0.421 Sum_probs=23.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 345668999999999999999999864
No 379
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.30 E-value=0.44 Score=51.71 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.4
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..++-.++|+|+.|+|||||++.|.+-
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 456678999999999999999999753
No 380
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.27 E-value=0.45 Score=44.33 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+..|+|+|.+|+||||+...|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 381
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.22 E-value=0.46 Score=46.89 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=22.1
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+..++..|+|+|.+|+||||+...|..
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445667899999999999999999864
No 382
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.10 E-value=0.42 Score=48.55 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=20.8
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHH
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl 512 (732)
+..++..|+|+|.+|+|||||.+.|.
T Consensus 5 m~~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 5 MVSGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp ----CCEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34567899999999999999999886
No 383
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=86.10 E-value=0.21 Score=47.84 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.|+|+|.+|+|||||++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 384
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=85.99 E-value=0.46 Score=51.29 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 345668999999999999999999853
No 385
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=85.98 E-value=0.37 Score=45.23 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+.|+|+|.+|+||||+...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 386
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=85.98 E-value=0.4 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=23.7
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+..++|+|+.|+|||||++.|.+-
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 457889999999999999999998753
No 387
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=85.92 E-value=0.47 Score=51.26 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 345668999999999999999999854
No 388
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.76 E-value=0.45 Score=46.41 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+..|+|+|.+|+||||+...|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 389
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=85.67 E-value=1.1 Score=44.83 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=45.0
Q ss_pred cceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhh---HHHHHHHHh---cCCCEE-EEEeCCCCCCCChH
Q 004746 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQT---NEAIAHAKA---AGVPIV-IAINKIDKDGANPE 612 (732)
Q Consensus 540 k~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt---~EiL~~ak~---~~vPII-VViNKiDL~~a~~e 612 (732)
..+.+.|+|||+.-.. .....+..+|.+|+++..+....... .+.+..+.. .+.+++ +|+|++|.......
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 3467999999985332 22334567999999998764222222 233333322 256664 89999986433223
Q ss_pred HHHHHHH
Q 004746 613 RVMQELS 619 (732)
Q Consensus 613 rv~~eL~ 619 (732)
...+.+.
T Consensus 188 ~~~~~l~ 194 (257)
T 1wcv_1 188 QVEAQLR 194 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3334443
No 390
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=85.62 E-value=0.49 Score=51.27 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 345668999999999999999999753
No 391
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=85.61 E-value=0.47 Score=44.36 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 392
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.57 E-value=0.41 Score=51.47 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
-.|+|+|+.|+|||||++.|.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999999875
No 393
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.55 E-value=0.48 Score=45.93 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+|+|+|.+|+||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 394
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=85.54 E-value=0.47 Score=43.65 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+|+|.|.+|+||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 395
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.36 E-value=0.59 Score=44.67 Aligned_cols=26 Identities=23% Similarity=0.129 Sum_probs=22.8
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..++-.++|+|++|+|||||+..|..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34566899999999999999999976
No 396
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=85.19 E-value=0.5 Score=50.92 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+-.++|+|+.|+|||||++.|.+-
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45567999999999999999999854
No 397
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=85.17 E-value=0.42 Score=44.69 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+|+|+|.+|+|||||...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 398
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=85.16 E-value=0.53 Score=51.28 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 345668999999999999999999853
No 399
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.11 E-value=0.45 Score=47.28 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcC
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
-++|+|++|+|||||++.|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999753
No 400
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.11 E-value=0.51 Score=44.37 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.|+|.|.+|+||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 401
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.02 E-value=0.52 Score=45.71 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
...+..|+|+|.+|+||||++..|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 402
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.00 E-value=0.4 Score=50.76 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+-.++|+|+.|+|||||++.|.+.
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999864
No 403
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=84.99 E-value=0.59 Score=47.63 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=22.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
...+-.++|+|++|+|||||+..|..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 45566899999999999999998864
No 404
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=84.86 E-value=0.53 Score=50.96 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+-.++|+|+.|+|||||++.|.+-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 34567999999999999999999854
No 405
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=84.84 E-value=0.46 Score=49.13 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.++..|+|+|.+|+|||||...|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999974
No 406
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.67 E-value=0.48 Score=53.39 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+..|+|+|++|+|||||++.|++.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45567999999999999999999863
No 407
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.63 E-value=0.49 Score=50.92 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..+-.|+|+|++|+|||||++.|.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999975
No 408
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=84.59 E-value=1.3 Score=46.08 Aligned_cols=66 Identities=21% Similarity=0.188 Sum_probs=48.7
Q ss_pred ceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCCEE-EEEeCCCCC
Q 004746 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDKD 607 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vPII-VViNKiDL~ 607 (732)
.+.+.|||||+.-.... .......+|.+|+|+...........+.++.+...+.+++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 36799999998543221 1123367899999999887777777788888887787754 889999963
No 409
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=84.59 E-value=0.57 Score=46.78 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.++..|+|.|.+|+||||+++.|..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999874
No 410
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=84.48 E-value=0.61 Score=50.86 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 456678999999999999999999863
No 411
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=84.46 E-value=0.55 Score=45.63 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=42.3
Q ss_pred eeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCC
Q 004746 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDK 606 (732)
Q Consensus 542 i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL 606 (732)
+.+.|+|||+.-.. .....+..+|.+|+|+..+.........+++.+...+++ +.+++|+++-
T Consensus 132 yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 132 KEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp CSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 46899999985332 333445789999999987643233334444555566665 7899999983
No 412
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=84.38 E-value=0.5 Score=43.60 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..|+|+|.+|+||||+...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 413
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.12 E-value=0.5 Score=43.31 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=20.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
....|+|.|.+|+|||+|+..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999998875
No 414
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=84.09 E-value=0.44 Score=51.15 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.9
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 345568999999999999999999854
No 415
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=83.99 E-value=0.4 Score=48.16 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
...+..|+|+|.+|+|||||...|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34566899999999999999999874
No 416
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=83.89 E-value=0.56 Score=46.89 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=21.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.++..|+|.|.+|+||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999999864
No 417
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.84 E-value=0.63 Score=47.82 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHH
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl 512 (732)
..++..|+|+|.+|+||||+.+.|.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999986
No 418
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=83.82 E-value=1.3 Score=44.27 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=48.0
Q ss_pred ceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhc--CCCEEEEEeCCCCCCCChHHHHHHH
Q 004746 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA--GVPIVIAINKIDKDGANPERVMQEL 618 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~--~vPIIVViNKiDL~~a~~erv~~eL 618 (732)
.+.+.|+|||+.-. ......+..+|.+|+++..+..........++.+... +.++.+|+|+++.. .....+.+.+
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~-~~~~~~~~~l 220 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN-RTHKTLFEIL 220 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT-CSCCHHHHHH
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc-chHHHHHHHH
Confidence 46799999998532 2333445669999999988653333344455555554 45788999999532 2334444444
Q ss_pred H
Q 004746 619 S 619 (732)
Q Consensus 619 ~ 619 (732)
.
T Consensus 221 ~ 221 (267)
T 3k9g_A 221 K 221 (267)
T ss_dssp T
T ss_pred h
Confidence 3
No 419
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=83.80 E-value=0.7 Score=44.85 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=22.7
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..++-.++|+|++|+|||||+..|..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 44566899999999999999999986
No 420
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.71 E-value=0.53 Score=48.30 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=19.1
Q ss_pred EEEEeCCCCCHHHHHHHHHc
Q 004746 494 LTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 494 VaIVG~~nvGKSSLLnrLl~ 513 (732)
|+++|++|+|||||++.|.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999975
No 421
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=83.70 E-value=0.66 Score=49.62 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=23.8
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..++-+++|+|+.|+|||||++.|.+.
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456779999999999999999999864
No 422
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.45 E-value=0.67 Score=46.48 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=21.4
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..++..|.|+|.||+||+|+...|..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556688899999999999998864
No 423
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=83.20 E-value=0.66 Score=43.29 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHH
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl 512 (732)
+...+|+|+.|+|||||+++|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3467999999999999999986
No 424
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=83.16 E-value=0.6 Score=47.25 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcC
Q 004746 493 VLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
-|+|+|++|+|||||++.|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999753
No 425
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=82.94 E-value=0.42 Score=51.35 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.1
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345668999999999999999999864
No 426
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=82.73 E-value=0.82 Score=45.16 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..++..|+|+|.+|+||||+...|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 427
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=82.71 E-value=0.63 Score=51.14 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.+-.|+|+|+.|+|||||++.|++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 444799999999999999999975
No 428
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=82.61 E-value=0.71 Score=45.35 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.|+|+|.+|+||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 429
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=82.54 E-value=0.69 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..++|+|++|+|||||++.|.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999999999753
No 430
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.40 E-value=0.81 Score=43.57 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=20.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..|.|.|.+|+|||+|+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998875
No 431
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=82.34 E-value=4.1 Score=41.25 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=25.2
Q ss_pred EEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCC
Q 004746 570 VIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDK 606 (732)
Q Consensus 570 ILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL 606 (732)
++.||=..-+.....+.+..+...++|+|+.+=..|-
T Consensus 104 vV~IDEaQFf~~~~v~~l~~la~~gi~Vi~~GLd~DF 140 (219)
T 3e2i_A 104 VIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDF 140 (219)
T ss_dssp EEEECCGGGSCTHHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred EEEEechhcCCHHHHHHHHHHHHCCCEEEEeeccccc
Confidence 5556544444444556666555689999999999884
No 432
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=82.31 E-value=0.74 Score=52.17 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.2
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.+.+-.++|+|+.|+|||||++.|.+-
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 345668999999999999999999764
No 433
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=82.15 E-value=0.74 Score=46.49 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.|+|+|.+|+|||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999863
No 434
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.00 E-value=2.7 Score=43.23 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=20.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
....|+|.|.+|+|||+|+.++..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 345799999999999999999964
No 435
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=81.90 E-value=0.71 Score=47.12 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+.+|+|+|.+|+|||||.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999998853
No 436
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=81.76 E-value=0.81 Score=42.33 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..+|+|+|.+|+||||+...|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998853
No 437
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=81.70 E-value=0.82 Score=45.22 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+|+|+|.||+||+|+...|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 438
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=81.52 E-value=0.86 Score=50.27 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.6
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..++-+++|+|+.|+|||||++.|.+.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 456778999999999999999999864
No 439
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=81.52 E-value=0.82 Score=51.84 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=23.2
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345668999999999999999999864
No 440
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=81.52 E-value=0.92 Score=42.77 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..++|.|++|+|||+|+..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998864
No 441
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=81.49 E-value=1.7 Score=44.09 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=42.6
Q ss_pred ceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHh------cCCCE-EEEEeCCCCCC
Q 004746 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKA------AGVPI-VIAINKIDKDG 608 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~------~~vPI-IVViNKiDL~~ 608 (732)
.+.+.|+|||+.-... ....+..+|.+|+++..+..........+..+.. .++++ -+|+|++|...
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 4689999999854322 2233456999999998876444444444444332 25664 48999999643
No 442
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=81.44 E-value=0.92 Score=51.26 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.7
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+.
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456678999999999999999999864
No 443
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=81.30 E-value=0.87 Score=42.58 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..++|.|.+|+|||+|+..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998875
No 444
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=81.24 E-value=3.5 Score=39.70 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=45.0
Q ss_pred ceeEEEEeCCCcccc--ch--hhcccccccC-eEEEEEEecCCCChhhHHHHHHHHhcCCCEE-EEEeCCCCCCCChHHH
Q 004746 541 LQPCVFLDTPGHEAF--GA--MRARGARVTD-IAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDKDGANPERV 614 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f--~~--~r~r~~~~AD-iVILVVDasdgi~~qt~EiL~~ak~~~vPII-VViNKiDL~~a~~erv 614 (732)
.+.+.|+||||.-.. .. .....+...+ .+|+|+........+....++.++..+.+++ +|+|++|.........
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~ 187 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEY 187 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHHH
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHHH
Confidence 467999999984321 10 1111122222 3778877754333445556666666678855 8899999643333444
Q ss_pred HHHHHH
Q 004746 615 MQELSS 620 (732)
Q Consensus 615 ~~eL~e 620 (732)
.+.+.+
T Consensus 188 ~~~l~~ 193 (224)
T 1byi_A 188 MTTLTR 193 (224)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 445
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=81.21 E-value=0.96 Score=43.97 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=43.8
Q ss_pred ceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCC
Q 004746 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKD 607 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~ 607 (732)
.+.+.|+|||+... ......+..+|.+|+|+..+..........+..+...+.+ +-+|+|++|..
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 46799999998533 2333455789999999976643333444555666655655 56899999964
No 446
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=81.21 E-value=1 Score=44.76 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+..|+|+|++|+|||+|+.+|.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999999975
No 447
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=81.07 E-value=1.7 Score=42.33 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=44.9
Q ss_pred ceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCC---CEEEEEeCCCCCC
Q 004746 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGV---PIVIAINKIDKDG 608 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~v---PIIVViNKiDL~~ 608 (732)
.+.+.|+|||+.-. ......+..+|.+|+++..+..........++.+...+. .+.+|+|++|...
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 46799999998532 233345678999999997764333444555666665553 3889999999643
No 448
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=81.04 E-value=0.98 Score=42.81 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 004746 493 VLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.|+|.|.+|+||||+...|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 449
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=80.84 E-value=0.95 Score=44.76 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=21.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
+..|+|.|..|+||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 567999999999999999999753
No 450
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=80.75 E-value=1.9 Score=44.66 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=48.3
Q ss_pred ceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCC
Q 004746 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKD 607 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~ 607 (732)
.+.+.|||||..-.... ....+..+|.+|+|+...........+.++.+...+.+ +-+|+|++|..
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 46799999998543221 12234679999999998766666667777888877777 56899999964
No 451
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=80.54 E-value=0.57 Score=47.08 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=22.3
Q ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 487 l~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
+..++..|+|.|..|+||||+++.|...
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 4456788999999999999999988753
No 452
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=80.48 E-value=0.9 Score=46.13 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=20.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..|+|+|.+|+||||+...|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 453
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=80.43 E-value=0.73 Score=52.37 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=23.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.+.+-.++|+|+.|+|||||++.|.+-
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999999864
No 454
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=80.41 E-value=0.59 Score=48.48 Aligned_cols=25 Identities=16% Similarity=0.494 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.+++.|+|.|.+|+|||||.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
No 455
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=80.32 E-value=1 Score=48.76 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.7
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
...+..|+|+|++|+|||||++.|.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 45566899999999999999999874
No 456
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=80.14 E-value=0.8 Score=45.12 Aligned_cols=64 Identities=8% Similarity=0.075 Sum_probs=41.8
Q ss_pred ceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcC---------CCEEEEEeCCCC
Q 004746 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAG---------VPIVIAINKIDK 606 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~---------vPIIVViNKiDL 606 (732)
.+.+.|+|||+.-. ......+..+|.+|+|+..+..........+..+...+ ..+.+|+|++|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 46899999998432 33444557899999999876432333334444444322 357899999984
No 457
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=80.06 E-value=0.88 Score=48.69 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q 004746 493 VLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 493 kVaIVG~~nvGKSSLLnrLl 512 (732)
.++|+|+.|+|||||+++|.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57799999999999999986
No 458
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=80.05 E-value=0.9 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+-.++|+|+.|+|||||++.|.+.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 34557999999999999999999864
No 459
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=80.01 E-value=0.27 Score=55.40 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=26.1
Q ss_pred CeEEEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCC
Q 004746 567 DIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (732)
Q Consensus 567 DiVILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiD 605 (732)
...++|+|++.........+...++..+.+++++--.||
T Consensus 118 ~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~ 156 (520)
T 2axn_A 118 GGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCD 156 (520)
T ss_dssp CCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECC
T ss_pred CCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC
Confidence 456788999876655555555666666777776665555
No 460
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=79.99 E-value=1.2 Score=45.23 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=22.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.++-.++|+|++|+|||||+..|..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4667899999999999999998874
No 461
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=79.86 E-value=0.91 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
-.++|+|+.|+|||||++.|.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999863
No 462
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=79.84 E-value=2.8 Score=44.56 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=22.9
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..++-.+.|+|++|+|||||+..|...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345668999999999999999998853
No 463
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=79.76 E-value=1.1 Score=46.24 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=21.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..+..++|.|++|+|||||++.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999875
No 464
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=79.75 E-value=0.85 Score=51.99 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=23.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.+.+-.++|+|+.|+|||||++.|.+-
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 345668999999999999999998763
No 465
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=79.59 E-value=1.2 Score=51.40 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.4
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 456678999999999999999999853
No 466
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=78.95 E-value=1.4 Score=42.77 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=20.7
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHH
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl 512 (732)
..++-.++|+|++|+|||||+..+.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3455679999999999999987765
No 467
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=78.93 E-value=1.2 Score=46.31 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+.++|.|++|+|||||++.+..
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999875
No 468
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=78.78 E-value=1.4 Score=43.42 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..+..|.|.|++|+|||+|+.+|..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999875
No 469
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=78.75 E-value=1.3 Score=44.32 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..+..+.|.|++|+|||+|+.+|..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4456799999999999999999975
No 470
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=78.42 E-value=1.1 Score=44.51 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=42.9
Q ss_pred ceeEEEEeCCCccccchhhcccccccCeEEEEEEecCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCC
Q 004746 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKD 607 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasdgi~~qt~EiL~~ak~~~vP-IIVViNKiDL~ 607 (732)
.+.+.|+|||+.-. ......+..+|.+|+|+..+..........+..+...+.+ +-+|+|++|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 35799999998433 2333445789999999876543333444555555555655 56899999863
No 471
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=78.06 E-value=0.76 Score=52.09 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+-
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 355678999999999999999988753
No 472
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=77.91 E-value=10 Score=43.46 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=49.5
Q ss_pred CccceEE--EEeeccCCCceEEEEEEeeEEecCCEEEE--cCeeEEEEEEEcCCCCccceecCCCCeeC
Q 004746 668 NAKGTVI--EAGLHKSKGPVATFILQNGTLKKGDVVVC--GEAFGKVRALFDDSGNRVDEAGPSIPVQV 732 (732)
Q Consensus 668 ~a~g~Vi--es~~dkgrG~VatglV~~GtLk~GD~Iv~--G~~~gkVrsI~~~~g~~V~~A~pG~~V~I 732 (732)
++...|+ .++. ...|.|+-+.|..|+|++|..+.+ |...|+|.+|..+ .+.+++|..|+-+.|
T Consensus 463 ~~~~~i~~~~~f~-~~~~~i~g~~v~~G~~~~~~~~~~~~~~~~g~i~sl~~~-k~~v~~~~~g~e~gi 529 (594)
T 1g7s_A 463 PASIRLIPKLVFR-QSKPAIGGVEVLTGVIRQGYPLMNDDGETVGTVESMQDK-GENLKSASRGQKVAM 529 (594)
T ss_dssp CEEEEEEEEEEEE-CSSSEEEEEEEEEEEEETTCEEECTTSCEEEEEEEEEET-TEEESEEETTCCEEE
T ss_pred eEEEEEecceEEc-CCCCeEEEEEEecCEEecCCeEEecCCcEEEEEehhccc-CccccccCCCCEEEE
Confidence 3444444 2443 345899999999999999999888 5578999999987 589999999987654
No 473
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=77.89 E-value=1.5 Score=44.26 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..+..|+|.|++|+|||+|+.+|..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3456899999999999999999975
No 474
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=77.86 E-value=1.3 Score=51.02 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.5
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
...+-.++|+|+.|+|||||++.|.+.
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 456678999999999999999999753
No 475
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=77.78 E-value=1.6 Score=43.57 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.++..|+|.|..|+||||+++.|..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999999874
No 476
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=77.48 E-value=0.92 Score=51.61 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=23.0
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.+.+-.++|+|+.|+|||||++.|.+-
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345668999999999999999988753
No 477
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=77.39 E-value=1.3 Score=42.79 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+..|+|+|.+|+||||+...|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 478
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=77.37 E-value=6.4 Score=38.42 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=24.0
Q ss_pred EEEEEecCCCChhhHHHHHHHHhcCCCEEEEEeCCCC
Q 004746 570 VIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDK 606 (732)
Q Consensus 570 ILVVDasdgi~~qt~EiL~~ak~~~vPIIVViNKiDL 606 (732)
++++|=..-+.+...+.+..+...++++|+.+-+.|-
T Consensus 84 vViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~df 120 (191)
T 1xx6_A 84 VIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDF 120 (191)
T ss_dssp EEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 5556533334444566666665568899998888883
No 479
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=77.14 E-value=1.7 Score=44.08 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=20.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
....|+|.|++|+|||+|+.+|..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999987764
No 480
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.11 E-value=1.7 Score=44.76 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.+..|.+.|++|+|||+|+.++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677889999999999999875
No 481
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=77.10 E-value=1.3 Score=43.21 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHH
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl 512 (732)
+...+|+|+.|+|||||+++|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 4567999999999999999985
No 482
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=77.07 E-value=1.3 Score=50.11 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK 515 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k 515 (732)
.++-.++|+|+.|+|||||++.|.+..
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356689999999999999999998743
No 483
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.88 E-value=1.2 Score=46.13 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+.++|.|++|+|||||+..|.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999998875
No 484
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=76.74 E-value=3.5 Score=41.88 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc
Q 004746 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 491 ~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
...|+|.|++|+|||+|+.++..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 485
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=76.66 E-value=1.6 Score=39.87 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=22.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.....|.|.|.+|+|||+|..+|...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45567999999999999999998753
No 486
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=76.50 E-value=1.5 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.+..+.|.|++|+|||+|+.+|..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999874
No 487
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=76.07 E-value=1.3 Score=50.19 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
.++-.++|+|+.|+|||||++.|.+-
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35667999999999999999999864
No 488
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=75.75 E-value=2.7 Score=45.12 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=19.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC
Q 004746 492 PVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 492 ~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
..+.|.|++|+|||+|+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 35789999999999999998753
No 489
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=75.74 E-value=3.5 Score=35.46 Aligned_cols=60 Identities=27% Similarity=0.390 Sum_probs=42.8
Q ss_pred ccceEEEEeeccCCCceEEEEEEeeEEecCCEEEE----c-CeeEEEEEEEcCCCCcccee-cCCCCeeC
Q 004746 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVC----G-EAFGKVRALFDDSGNRVDEA-GPSIPVQV 732 (732)
Q Consensus 669 a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~----G-~~~gkVrsI~~~~g~~V~~A-~pG~~V~I 732 (732)
+.|.|.+.. ...| .++ .-+...+.+||.|.+ | ....+|..|++.+|+.++.| .||+.|.|
T Consensus 8 fvG~V~~~~--~~~g-~~~-ie~rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~G~~i~~A~~~~~~v~i 73 (89)
T 4he6_A 8 FAGLVLGYD--PETG-IAT-VQQRNHFRPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKF 73 (89)
T ss_dssp CSEEEEEEE--TTTT-EEE-EEESSCBCTTCEEEEESTTSCCEEEECCCEEETTSCEESCBCSTTCEEEE
T ss_pred EEEEEEEEe--CCCC-EEE-EEEcCCcCCCCEEEEEcCCCCcEEEEeHHeEcCCCCEeeEcCCCCeEEEE
Confidence 455555432 2223 333 457899999999987 3 34467899999899999999 99988864
No 490
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=75.37 E-value=1.4 Score=42.95 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=21.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~~ 514 (732)
....|+|+|.+|+||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4467999999999999999998753
No 491
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=75.29 E-value=1.5 Score=45.15 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.+..+.|.|++|+|||+|+..+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999875
No 492
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=75.28 E-value=1.5 Score=50.40 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCC
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK 515 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~~k 515 (732)
..+-.++|+|+.|+|||||++.|.+-.
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356689999999999999999998743
No 493
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=75.02 E-value=1.9 Score=44.28 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..+..|+|.|++|+|||+|+.+|..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 4456799999999999999999975
No 494
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=74.90 E-value=1.6 Score=46.91 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=21.7
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHH
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl 512 (732)
..+..+|+++|..++|||||+..|.
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHHH
Confidence 4667899999999999999998864
No 495
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=74.83 E-value=1.5 Score=44.08 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=19.5
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 488 ~~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
+.++..|+|.|.+|+||||+++.|..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999864
No 496
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=74.54 E-value=3.2 Score=42.25 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=46.3
Q ss_pred ceeEEEEeCCCccccchhhcccccccCeEEEEEEecC----CC---Chh---------hHHHH---HHHH----hcC-CC
Q 004746 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD----GI---RPQ---------TNEAI---AHAK----AAG-VP 596 (732)
Q Consensus 541 ~i~ItLIDTPGhE~f~~~r~r~~~~ADiVILVVDasd----gi---~~q---------t~EiL---~~ak----~~~-vP 596 (732)
.+.+.|||||+.- .......+..+|.+|+++..+. .. ... ..+.+ +.++ ..+ .+
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 4679999999863 3344455688999999998762 11 111 01113 3222 224 66
Q ss_pred EEEEEeCCCCCC-CChHHHHHHHHH
Q 004746 597 IVIAINKIDKDG-ANPERVMQELSS 620 (732)
Q Consensus 597 IIVViNKiDL~~-a~~erv~~eL~e 620 (732)
+.+|+|++|... .....+.+.+.+
T Consensus 181 ~~vV~N~~~~~~~~~~~~~~~~l~~ 205 (286)
T 2xj4_A 181 WVVLRNRLATTEARNRKRLEDRLNA 205 (286)
T ss_dssp EEEEEECCTTCCGGGHHHHHHHHHH
T ss_pred EEEEEeeecCCCcchhHHHHHHHHH
Confidence 889999999754 333444444444
No 497
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=74.49 E-value=0.73 Score=49.16 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHH
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIR 512 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl 512 (732)
..+ .++|+|+.|+|||||+++|.
T Consensus 59 ~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHTHHHH
T ss_pred CCC-cEEEECCCCCCHHHHHHHHH
Confidence 345 89999999999999999874
No 498
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=74.25 E-value=1.5 Score=45.13 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=21.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 489 ~r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
..+..+.|.|++|+|||+|+..+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999875
No 499
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=74.09 E-value=5.6 Score=44.75 Aligned_cols=86 Identities=12% Similarity=0.150 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHh-hhhhccCCCCCccceEEEEeeccCCCceEEEEEEeeEEecCCEEEE---cC--eeEEEEEEEcCCCC
Q 004746 646 DDLLETIMLVAE-LQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVC---GE--AFGKVRALFDDSGN 719 (732)
Q Consensus 646 deLfe~Ii~lae-l~~lk~~p~r~a~g~Vies~~dkgrG~VatglV~~GtLk~GD~Iv~---G~--~~gkVrsI~~~~g~ 719 (732)
.+|++.+..... +........-.....|.+++.....|.|+-+.|..|+|++|..+.+ |. +.|+|.+|..+ .+
T Consensus 385 y~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~-k~ 463 (501)
T 1zo1_I 385 YNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRF-KD 463 (501)
T ss_dssp SHHHHHTHHHHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEET-TE
T ss_pred HHHHHHHHHHHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhccc-Cc
Confidence 355555544322 2222222223344556676655566999999999999999999988 33 67999999987 58
Q ss_pred ccceecCCCCeeC
Q 004746 720 RVDEAGPSIPVQV 732 (732)
Q Consensus 720 ~V~~A~pG~~V~I 732 (732)
.++++..|+-+.|
T Consensus 464 ~v~e~~~g~ecgi 476 (501)
T 1zo1_I 464 DVNEVRNGMECGI 476 (501)
T ss_dssp EESEEETTCCEEE
T ss_pred cccEECCCCEEEE
Confidence 9999999987643
No 500
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=73.52 E-value=2.3 Score=44.20 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 004746 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (732)
Q Consensus 490 r~~kVaIVG~~nvGKSSLLnrLl~ 513 (732)
.+..|.|.|++|+|||+|+..+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999875
Done!