BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004747
(732 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 203/669 (30%), Positives = 301/669 (44%), Gaps = 95/669 (14%)
Query: 73 TGVACNFQTGHVVSINLTDTSLSGQVHP--RLCKLSFLEFLVLSSNA--FTGRISTCFGG 128
+G C + + S++L+ SLSG V L S L+FL +SSN F G++S GG
Sbjct: 94 SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS---GG 147
Query: 129 L--SGLKTLDLSYNKFVG------VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM 180
L + L+ LDLS N G V+ D +L+ L + GN G V +
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELK---HLAISGNKISGDVDVSRC----V 200
Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS------LLVLNLGS 234
NLE LD S N+F IP L +L+HLD+ N L+G DF ++ L +LN+ S
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG---DFSRAISTCTELKLLNISS 256
Query: 235 NRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIA-SLQALTXXXXXXXXXXYEISPRL 293
N+F G +P SL L L N G IP ++ + LT + P
Sbjct: 257 NQFVGPIPPLPLK--SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 294 VFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELK----- 348
G LP + + GL +LDLS N FSGE+P +T L
Sbjct: 315 GSCSLLESLALSSNNFSGELP--MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 349 ----------------------SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
+LQ L+L NN G+IP + N + L + LS N LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
+IP ++ +L L + N L GEI EL + +L+ L + N ++GEIP L+ +L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
+ S+N L+G + I + NL ++ N SGN+P L +++ +D +TN F G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 507 FIPDGNF----NFSLNF---------NKSDIGRSMPAKSFVLPRSMVIRISVTAIDT-NE 552
IP F + NF + + +L + + + T N
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 553 LSFNYQLF------------SAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQV 600
+ +++ S + +D+S N+L G IPK + + L LNL N + G +
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 601 PG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGA 659
P + LR L LDLS N L G+IP +S+L LT ++LS N+ SG +P ++ FP A
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 732
Query: 660 -FAGNPNLC 667
F NP LC
Sbjct: 733 KFLNNPGLC 741
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 170/586 (29%), Positives = 253/586 (43%), Gaps = 112/586 (19%)
Query: 89 LTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRIST--CFGGLSGLKTLDLSYN--KFVG 144
L+++ ++G V C S L L LS N+ +G ++T G SGLK L++S N F G
Sbjct: 84 LSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 145 VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLK 204
V +KL +L L L N G GWV + CGE
Sbjct: 143 KVSGG-LKLNSLEVLDLSANSISGANVVGWV-------------LSDGCGE--------- 179
Query: 205 SLKHLDLEKNNLTGNVH-DFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG 263
LKHL + N ++G+V +L L++ SN FS +P F +L L + N + G
Sbjct: 180 -LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG 237
Query: 264 GIPTCIASLQALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEK 323
F + I+ TE
Sbjct: 238 D-------------------------------FSR-----------------AISTCTE- 248
Query: 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHN 382
L LL++S N+F G IP LKSLQ L L+ N GEIP + G L +DLS N
Sbjct: 249 --LKLLNISSNQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Query: 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTLA 441
G++P C L +L +++NN SGE+ + L + LK+LD+S N+ SGE+P +L
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Query: 442 GLK-SLEIVDFSSNNLSGSL--NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMD 498
L SL +D SSNN SG + N L+ + N +G +P L + + +
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 499 FSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQ 558
S N G IP S +G S R + + +++ + + +
Sbjct: 425 LSFNYLSGTIP------------SSLG------SLSKLRDLKLWLNMLEGEIPQELMYVK 466
Query: 559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHN 617
+ +D +D L G IP GL L +++LS N L G++P + RL +L L LS+N
Sbjct: 467 TLETLILDFND--LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 618 SLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGN 663
S +G IP + + L L+L+ N F+G +P Q G A N
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS--GKIAAN 568
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 182 bits (463), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 203/669 (30%), Positives = 301/669 (44%), Gaps = 95/669 (14%)
Query: 73 TGVACNFQTGHVVSINLTDTSLSGQVHP--RLCKLSFLEFLVLSSNA--FTGRISTCFGG 128
+G C + + S++L+ SLSG V L S L+FL +SSN F G++S GG
Sbjct: 91 SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS---GG 144
Query: 129 L--SGLKTLDLSYNKFVG------VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM 180
L + L+ LDLS N G V+ D +L+ L + GN G V +
Sbjct: 145 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELK---HLAISGNKISGDVDVSRC----V 197
Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS------LLVLNLGS 234
NLE LD S N+F IP L +L+HLD+ N L+G DF ++ L +LN+ S
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG---DFSRAISTCTELKLLNISS 253
Query: 235 NRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIA-SLQALTXXXXXXXXXXYEISPRL 293
N+F G +P SL L L N G IP ++ + LT + P
Sbjct: 254 NQFVGPIPPLPLK--SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 294 VFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELK----- 348
G LP + + GL +LDLS N FSGE+P +T L
Sbjct: 312 GSCSLLESLALSSNNFSGELP--MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 349 ----------------------SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
+LQ L+L NN G+IP + N + L + LS N LSG
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
+IP ++ +L L + N L GEI EL + +L+ L + N ++GEIP L+ +L
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
+ S+N L+G + I + NL ++ N SGN+P L +++ +D +TN F G
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 507 FIPDGNF----NFSLNF---------NKSDIGRSMPAKSFVLPRSMVIRISVTAIDT-NE 552
IP F + NF + + +L + + + T N
Sbjct: 550 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 553 LSFNYQLF------------SAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQV 600
+ +++ S + +D+S N+L G IPK + + L LNL N + G +
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Query: 601 PG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGA 659
P + LR L LDLS N L G+IP +S+L LT ++LS N+ SG +P ++ FP A
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 729
Query: 660 -FAGNPNLC 667
F NP LC
Sbjct: 730 KFLNNPGLC 738
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 169/586 (28%), Positives = 251/586 (42%), Gaps = 112/586 (19%)
Query: 89 LTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRIST--CFGGLSGLKTLDLSYN--KFVG 144
L+++ ++G V C S L L LS N+ +G ++T G SGLK L++S N F G
Sbjct: 81 LSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 145 VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLK 204
V +KL +L L L N G GWV + CGE
Sbjct: 140 KVSGG-LKLNSLEVLDLSANSISGANVVGWV-------------LSDGCGE--------- 176
Query: 205 SLKHLDLEKNNLTGNVH-DFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG 263
LKHL + N ++G+V +L L++ SN FS +P F +L L + N +
Sbjct: 177 -LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL-- 232
Query: 264 GIPTCIASLQALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEK 323
G I+ TE
Sbjct: 233 ----------------------------------------------SGDFSRAISTCTE- 245
Query: 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHN 382
L LL++S N+F G IP LKSLQ L L+ N GEIP + G L +DLS N
Sbjct: 246 --LKLLNISSNQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 301
Query: 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTLA 441
G++P C L +L +++NN SGE+ + L + LK+LD+S N+ SGE+P +L
Sbjct: 302 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 361
Query: 442 GLK-SLEIVDFSSNNLSGSL--NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMD 498
L SL +D SSNN SG + N L+ + N +G +P L + + +
Sbjct: 362 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 421
Query: 499 FSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQ 558
S N G IP S +G S R + + +++ + + +
Sbjct: 422 LSFNYLSGTIP------------SSLG------SLSKLRDLKLWLNMLEGEIPQELMYVK 463
Query: 559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHN 617
+ +D +D L G IP GL L +++LS N L G++P + RL +L L LS+N
Sbjct: 464 TLETLILDFND--LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 618 SLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGN 663
S +G IP + + L L+L+ N F+G +P Q G A N
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS--GKIAAN 565
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 147/349 (42%), Gaps = 104/349 (29%)
Query: 353 LFLSNNLLIGEI-----------------------------------------------P 365
LFLSN+ + G + P
Sbjct: 79 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 366 ARIG---NLTYLQVIDLSHNMLSGSIPLNIV---GCFQLLALIVNNNNLSGEIQPELDAL 419
++ L L+V+DLS N +SG+ + V GC +L L ++ N +SG++ ++
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRC 196
Query: 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479
+L+ LD+S+N S IP L +L+ +D S N LSG + AI+ T LK +I+ N+
Sbjct: 197 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSM 539
G +P +++Q + + NKF G IPD
Sbjct: 256 FVGPIPP--LPLKSLQYLSLAENKFTGEIPD----------------------------- 284
Query: 540 VIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ 599
A DT G+DLS N +G +P LE L LS N G+
Sbjct: 285 ---FLSGACDT-----------LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 600 VP--GLYRLRSLRALDLSHNSLTGQIPGNISSLQ-ELTLLNLSYNSFSG 645
+P L ++R L+ LDLS N +G++P ++++L L L+LS N+FSG
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 122/240 (50%), Gaps = 24/240 (10%)
Query: 364 IPARIGNLTYLQVIDLSH-NMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSL 422
IP+ + NL YL + + N L G IP I QL L + + N+SG I L + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNL-KYFSIARNKLS 481
LD S N +SG +P +++ L +L + F N +SG++ D+ ++ L +I+RN+L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 482 GNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVI 541
G +P F+ + +D S N G D + F + N I + + +F L +
Sbjct: 188 GKIPP-TFANLNLAFVDLSRNMLEG---DASVLFGSDKNTQKIHLAKNSLAFDLGKV--- 240
Query: 542 RISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP 601
LS N G+DL +N ++GT+P+GL QL+ L LN+SFN L G++P
Sbjct: 241 ----------GLSKNLN-----GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 47/264 (17%)
Query: 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT 465
NNL G I P + L L L I++ +SG IP L+ +K+L +DFS N LSG+L +I+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 466 KWTNLKYFSIARNKLSGNLPNWLFSFQAI-QMMDFSTNKFMGFIPDGNFNFSLNFNKSDI 524
NL + N++SG +P+ SF + M S N+ G IP N +L F
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF----- 201
Query: 525 GRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQ 584
+DLS N+L G +
Sbjct: 202 ----------------------------------------VDLSRNMLEGDASVLFGSDK 221
Query: 585 GLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
+ ++L+ N L + + ++L LDL +N + G +P ++ L+ L LN+S+N+
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 645 GFVPWKQGYQKFP-GAFAGNPNLC 667
G +P Q+F A+A N LC
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLC 305
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 119/271 (43%), Gaps = 39/271 (14%)
Query: 40 NLEDKASLLLFKSLVQDPTQKLSSWV-GSNCTN--WTGVAC--NFQTGHVVSINLTD--- 91
N +DK +LL K + +PT LSSW+ ++C N W GV C + QT V +++L+
Sbjct: 4 NPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 92 ------------------------TSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFG 127
+L G + P + KL+ L +L ++ +G I
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDF 187
+ L TLD SYN G +P +I L NL + GN + G P G+FS +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTI 181
Query: 188 SFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS---LLVLNLGSNRFSGTLPCF 244
S N G+IP + L +L +DL +N L G+ + S ++L N + L
Sbjct: 182 SRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 245 AASAMSLTVLKLDNNSVVGGIPTCIASLQAL 275
S +L L L NN + G +P + L+ L
Sbjct: 241 GLSK-NLNGLDLRNNRIYGTLPQGLTQLKFL 270
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 9/223 (4%)
Query: 312 PLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNL 371
P+PS +A L + + N G IP I +L L L++++ + G IP + +
Sbjct: 67 PIPSSLANLPYLNFLYIGGI--NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSL-KILDISNN 430
L +D S+N LSG++P +I L+ + + N +SG I + L + IS N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS 490
+++G+IP T A L +L VD S N L G + N + +A+N L+ +L S
Sbjct: 185 RLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 491 FQAIQMMDFSTNKFMGFIPDG----NFNFSLNFNKSDIGRSMP 529
+ + +D N+ G +P G F SLN + +++ +P
Sbjct: 244 -KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 35/180 (19%)
Query: 70 TNWTGVACNF--QTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFG 127
TN +G +F Q +V+++ + +LSG + P + L L + N +G I +G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 128 GLSGLKT-LDLSYNKFVGVVPDAIMKL-----------------------RNLRELILKG 163
S L T + +S N+ G +P L +N +++ L
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 164 NP---ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV 220
N +LG V S NL LD N G +P+ L LK L L++ NNL G +
Sbjct: 231 NSLAFDLGKV------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 85 VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVG 144
S+ ++ L+G++ P L+ L F+ LS N G S FG + + L+ N
Sbjct: 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235
Query: 145 VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE 198
+ + +NL L L+ N + G P + L L+ SFN+ CGEIP+
Sbjct: 236 DLGKVGLS-KNLNGLDLRNN-RIYGTLPQGLTQLKF-LHSLNVSFNNLCGEIPQ 286
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 576 IPKGLFQLQGLEYLNLS-FNFLDGQVP-GLYRLRSLRALDLSHNSLTGQIPGNISSLQEL 633
IP L L L +L + N L G +P + +L L L ++H +++G IP +S ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 634 TLLNLSYNSFSGFVP 648
L+ SYN+ SG +P
Sbjct: 128 VTLDFSYNALSGTLP 142
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 14/216 (6%)
Query: 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG--EIPARIGNLTYLQVIDLSH 381
+ L+ + N F+ + + LK LQ L L N L ++ N++ L+ +D+S
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 382 NML-SGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL 440
N L S + +L L +++N L+G + L +K+LD+ NN+I IP +
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-IPKDV 469
Query: 441 AGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500
L++L+ ++ +SN L + + T+L+Y + N W + I+ +
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP-------WDCTCPGIRYLSEW 522
Query: 501 TNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLP 536
NK G + + + + + K G P +S + P
Sbjct: 523 INKHSGVVRNSAGSVAPDSAKCS-GSGKPVRSIICP 557
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 565 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQI 623
+DL +N + +IPK + LQ L+ LN++ N L G++ RL SL+ + L N
Sbjct: 455 LDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513
Query: 624 PG 625
PG
Sbjct: 514 PG 515
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 584 QGLEYLNLSFNFLDGQVPGLYRL--RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 641
+ + LNLS N L G V +R ++ LDL HN+ IP +++ LQ L LN++ N
Sbjct: 428 ESILVLNLSSNMLTGSV---FRCLPPKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASN 483
Query: 642 SFSG 645
Sbjct: 484 QLKS 487
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398
L L+L+ N L E+PA I NL+ L+V+DLSHN L+ S+P + CFQL
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 555 FNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDL 614
++ QL+ A +DLS NL I +F+ L L L+ N L + L +LR LDL
Sbjct: 221 YDDQLWHA--LDLS-NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDL 277
Query: 615 SHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQG 652
SHN LT +P + S +L +++ +PW+ G
Sbjct: 278 SHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPWEFG 313
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 313 LPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT 372
LP++I + L +LDLSHNR + +P ++ L+ + +N ++ +P GNL
Sbjct: 262 LPAEIKNL---SNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLC 316
Query: 373 YLQVIDLSHNMLS 385
LQ + + N L
Sbjct: 317 NLQFLGVEGNPLE 329
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 123/284 (43%), Gaps = 28/284 (9%)
Query: 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQ 431
T +Q +DL+ L+G +P I G L L++N N+ Q + SL+ L I N
Sbjct: 277 TRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNM 335
Query: 432 ISGEI-PLTLAGLKSLEIVDFSSNNLSGS--LNDAITKWTNLKYFSIARNKLSGNLPNWL 488
++ L L++L+ +D S +++ S N + +L+Y +++ N+ G
Sbjct: 336 RKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAF 395
Query: 489 FSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAI 548
++++D + P P ++ L R V+ +S +
Sbjct: 396 KECPQLELLDVAFTHLHVKAPHS-----------------PFQNLHLLR--VLNLSHCLL 436
Query: 549 DTNELSFNYQLFSAVGMDLSDNLLH-GTIPK-GLFQLQG-LEYLNLS-FNFLDGQVPGLY 604
DT+ L ++L N G+I K L Q+ G LE L LS N L +
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFH 496
Query: 605 RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 648
LR++ LDLSHNSLTG +S L+ L LN++ N+ P
Sbjct: 497 GLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPP 539
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP-ELGGVFPGWVGNFSMNLEK 184
F L L+ L+LS+ + L++LR L L+GN + G + + +LE
Sbjct: 420 FQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEI 479
Query: 185 LDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL--LVLNLGSNRFSGTLP 242
L S + ++ + L+++ HLDL N+LTG+ D L L LN+ SN P
Sbjct: 480 LILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIRIIPP 539
Query: 243 CFAASAMSLTVLKLDNN 259
+ +++ L +N
Sbjct: 540 HLLPALSQQSIINLSHN 556
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNL 156
LE L+LSS F GL + LDLS+N G DA+ L+ L
Sbjct: 477 LEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL 525
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNML 384
LDLSHN +G+ ++ LK L SNN+ I P + L+ +I+LSHN L
Sbjct: 504 LDLSHNSLTGDSMDALSHLKGLYLNMASNNIRIIP-PHLLPALSQQSIINLSHNPL 558
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
L LE L LS N F GL L TL+L N+ V A L LREL L+ N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNL 216
P P + N +L +LD I E+ + L +L++L+L NL
Sbjct: 118 PIES--IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNL 168
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 86/222 (38%), Gaps = 22/222 (9%)
Query: 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482
+ L++ N I T L+ LEI+ S N + A +L + N+L+
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT- 96
Query: 483 NLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIR 542
+P F + + + N + IP FN + + D+G + R
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE-------------LKR 143
Query: 543 ISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG 602
+ + E N + + +L D IP L L LE L LS N LD PG
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLKD------IP-NLTALVRLEELELSGNRLDLIRPG 196
Query: 603 LYR-LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 643
++ L SLR L L H + L+ L LNLS+N+
Sbjct: 197 SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
L LE L LS N F GL+ L TL+L N+ + A + L L+EL L+
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNL 216
NP P + N +L +LD I E + L +L++L+L NL
Sbjct: 146 NPIES--IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 18/235 (7%)
Query: 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482
++L++ NQI + L+ LEI+ S N++ A NL + N+L+
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT- 125
Query: 483 NLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGR----SMPAKSFVLPRS 538
+PN F + + + N + IP FN + + D+G S ++ S
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Query: 539 MVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIP---KGLFQLQGLEYLNLSFNF 595
+ +++ + E+ L +DLS N L P +GL LQ L +
Sbjct: 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245
Query: 596 LDGQVPGLYRLRSLRALDLSHNSLTGQIPGNI-SSLQELTLLNLSYNSFSGFVPW 649
++ L+SL ++L+HN+LT +P ++ + L L ++L +N PW
Sbjct: 246 IERN--AFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN------PW 291
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKL 185
F GLS L+ L+L+ + P+ + L L EL L GN L + PG M+L+KL
Sbjct: 181 FEGLSNLRYLNLAMCNLREI-PN-LTPLIKLDELDLSGN-HLSAIRPGSFQGL-MHLQKL 236
Query: 186 DFSFNSFCGEIPESLY-YLKSLKHLDLEKNNLTGNVHDFYQSL 227
+ S I + + L+SL ++L NNLT HD + L
Sbjct: 237 -WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
L LE L LS N F GL L TL+L N+ V A L LREL L+ N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNL 216
P P + N +L +LD I E+ + L +L++L+L NL
Sbjct: 118 P--IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNL 168
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 86/222 (38%), Gaps = 22/222 (9%)
Query: 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482
+ L++ N I T L+ LEI+ S N + A +L + N+L+
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT- 96
Query: 483 NLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIR 542
+P F + + + N + IP FN + + D+G + R
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE-------------LKR 143
Query: 543 ISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG 602
+ + E N + + +L D IP L L LE L LS N LD PG
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLKD------IP-NLTALVRLEELELSGNRLDLIRPG 196
Query: 603 LYR-LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 643
++ L SLR L L H + L+ L LNLS+N+
Sbjct: 197 SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 132/325 (40%), Gaps = 49/325 (15%)
Query: 123 STCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFS--M 180
S F L LK L+L+YNK + +A L NL+ L L N LG ++ NF
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYS---SNFYGLP 338
Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGT 240
+ +D N ++ +L+ L+ LDL N LT +H F S+ + L N+ T
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIH-FIPSIPDIFLSGNKLV-T 395
Query: 241 LPC--FAASAMSLTVLKLDNNSVVGGIPTCIASLQALTXXXXXXXXXXYEISPRLVFFEK 298
LP A+ + L+ +L+N ++ + + LQ L + +P
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLR-VPHLQILILNQNRFSSCSGDQTP------- 447
Query: 299 XXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNN 358
G ++A TE V LSH LQ L+L++N
Sbjct: 448 -SENPSLEQLFLGENMLQLAWETELCWDVFEGLSH----------------LQVLYLNHN 490
Query: 359 LLIGEIPARIGNLTYLQVIDLSHNMLS----GSIPLNIVGCFQLLALIVNNNNLSGEIQP 414
L P +LT L+ + L+ N L+ +P N L L ++ N L + P
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN------LEILDISRNQL---LAP 541
Query: 415 ELDALDSLKILDISNNQISGEIPLT 439
D SL +LDI++N+ E L+
Sbjct: 542 NPDVFVSLSVLDITHNKFICECELS 566
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 109/260 (41%), Gaps = 41/260 (15%)
Query: 412 IQPELDALDSLKILDISNNQISGEIPLTLAGL--KSLEIVDFSSNNLSGSLNDAITKWTN 469
+ P L+SLK +D S+NQI L L K+L ++N+L ++ K N
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199
Query: 470 ------LKYFSIARN----KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNF 519
L+ ++ N ++GN N + QA ++ + MG F F
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI--LAHHIMG----AGFGFH--- 250
Query: 520 NKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNE---LSFNYQLFSAVG----MDLSDNLL 572
N D ++ A + R SV +D + S N ++F + ++L+ N +
Sbjct: 251 NIKDPDQNTFAG--------LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 573 HGTIPKGLFQLQGLEYLNLSFNFLDGQV--PGLYRLRSLRALDLSHNSLTGQIPGNISSL 630
+ + + L L+ LNLS+N L G++ Y L + +DL N + L
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361
Query: 631 QELTLLNLSYNSFS--GFVP 648
++L L+L N+ + F+P
Sbjct: 362 EKLQTLDLRDNALTTIHFIP 381
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 79/357 (22%), Positives = 152/357 (42%), Gaps = 42/357 (11%)
Query: 323 KAGLVLLDLSHNRFSGEIPLKITE-LKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSH 381
++ + LDLSH F + ++ E LK L+ L L+ N + L LQV++LS+
Sbjct: 265 RSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323
Query: 382 NMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLA 441
N+L N G ++ + + N+++ L+ L+ LD+ +N ++ T+
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIH 378
Query: 442 GLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG-NLPNWLFSFQAIQMMDFS 500
+ S+ + S N L +T NL + S N+L ++ +L +Q++ +
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKINLT--ANLIHLS--ENRLENLDILYFLLRVPHLQILILN 434
Query: 501 TNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNY--- 557
N+F D + + + + +G +M ++ + ++ + L+ NY
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494
Query: 558 -------QLFSAVGMDLSDNLL----HGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRL 606
L + G+ L+ N L H +P LE L++S N L P ++
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA------NLEILDISRNQLLAPNPDVF-- 546
Query: 607 RSLRALDLSHNSLTGQIPGNISSLQELTLLN-LSYNSFSGFVPWKQGYQKFPGAFAG 662
SL LD++HN I + T +N L++ + + P Y +P +F+G
Sbjct: 547 VSLSVLDITHNKF-------ICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSG 596
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 10/153 (6%)
Query: 340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL 399
IP +TEL +L N +P + N +L +IDLS+N +S + QLL
Sbjct: 29 IPRDVTEL------YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS 459
LI++ N L D L SL++L + N IS L +L + +N L
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141
Query: 460 LN-DAITKWTNLKYFS--IARNKLSGNLPNWLF 489
N ++ W +Y IAR G + + L
Sbjct: 142 CNMQWLSDWVKSEYKEPGIARCAGPGEMADKLL 174
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 436 IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQ 495
+P L+ K L ++D S+N +S N + + T L ++ N+L P ++++
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 496 MMDFSTNKFMGFIPDGNFN 514
++ N + +P+G FN
Sbjct: 106 LLSLHGND-ISVVPEGAFN 123
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
L + LS+N + + F ++ L TL LSYN+ + P L++LR L L GN
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 13/231 (5%)
Query: 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482
++LD+ N+I A LE ++ + N +S A NL+ + N+L
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 483 NLPNWLFS-FQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRS----MPAKSFV--- 534
+P +F+ + +D S NK + + D F N ++G + + ++F
Sbjct: 95 -IPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 535 -LPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSF 593
L + + + ++T+I T LS + L L+ N + K L++L+ LE + +
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH--W 210
Query: 594 NFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
+LD P +L +L ++H +LT + L L LNLSYN S
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 108/275 (39%), Gaps = 8/275 (2%)
Query: 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGS 387
LLDL NR + L+ L L+ N++ P NL L+ + L N L
Sbjct: 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-L 94
Query: 388 IPLNI-VGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
IPL + G L L ++ N + + L +LK L++ +N + +GL SL
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
E + NL+ +A++ L + ++ +++++ S ++
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214
Query: 507 FIPDGNFNFSLNFNKSDIGR-SMPAKSFVLPRSMV----IRISVTAIDTNELSFNYQLFS 561
+ N + LN I ++ A ++ R +V + +S I T E S ++L
Sbjct: 215 TM-TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273
Query: 562 AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFL 596
+ L L P L L LN+S N L
Sbjct: 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG----GVFPGWVGNFSMN 181
F L+ L+L+ N V P A L NLR L L+ N L GVF G N
Sbjct: 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGL-----SN 105
Query: 182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL 227
L KLD S N + L +LK L++ N+L H + L
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 84 VVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFV 143
V I LT L H L L+ L+L SN T + F GLS ++ L L N+
Sbjct: 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142
Query: 144 GVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYL 203
V P A L +L L L NP + W+G + +K + N C + Y+L
Sbjct: 143 TVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR--KKRIVTGNPRC----QKPYFL 196
Query: 204 KSLKHLDLEKNNLT 217
K + D+ + T
Sbjct: 197 KEIPIQDVAIQDFT 210
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 606 LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF--SGFVPWKQGYQKFPGAFAGN 663
L S+R L L N +T PG +L L+ LNL N F + ++ W + + GN
Sbjct: 128 LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGN 187
Query: 664 P 664
P
Sbjct: 188 P 188
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL- 416
+L + ++P + T + V++L+HN L N QL +L V N +S +++PEL
Sbjct: 18 HLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELC 74
Query: 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA 476
L LK+L++ +N++S T A +L + SN++ N+ K NL ++
Sbjct: 75 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 134
Query: 477 RNKLSG 482
N LS
Sbjct: 135 HNGLSS 140
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL--IGEIPARIGNLTYLQVIDL 379
++ L+ LDLSHN S +L++LQ L LSNN + + I + L+ ++L
Sbjct: 124 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 183
Query: 380 SHNMLSGSIPLNIVGCF----QLLALIVNNNNLSGEIQPELD---ALDSLKILDISNNQI 432
S N + P GCF +L L +NN L + +L A S++ L +SN+Q+
Sbjct: 184 SSNQIKEFSP----GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 239
Query: 433 SGEIPLTLAGLK--SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
S T GLK +L ++D S NNL+ ND+ L+YF + N +
Sbjct: 240 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 289
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 19/205 (9%)
Query: 76 ACNFQTGHVVSINLTDTSLSGQVHPRLC---KLSFLEFLVLSSNAFTGRISTCFGGL--S 130
C G + + L + L + +LC + + L LS++ + +T F GL +
Sbjct: 194 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 253
Query: 131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN-------PELGGVFPGWVGNFSMNLE 183
L LDLSYN V D+ L L L+ N L G+F N +
Sbjct: 254 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 313
Query: 184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNL--GSNRFSG-- 239
K S S S +LK L+HL++E N++ G + + L+ L SN F+
Sbjct: 314 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 373
Query: 240 --TLPCFAASAMS-LTVLKLDNNSV 261
T F + A S L +L L N +
Sbjct: 374 TLTNETFVSLAHSPLHILNLTKNKI 398
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL- 416
+L + ++P + T + V++L+HN L N QL +L V N +S +++PEL
Sbjct: 23 HLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELC 79
Query: 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA 476
L LK+L++ +N++S T A +L + SN++ N+ K NL ++
Sbjct: 80 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 139
Query: 477 RNKLSG 482
N LS
Sbjct: 140 HNGLSS 145
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL--IGEIPARIGNLTYLQVIDL 379
++ L+ LDLSHN S +L++LQ L LSNN + + I + L+ ++L
Sbjct: 129 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 188
Query: 380 SHNMLSGSIPLNIVGCF----QLLALIVNNNNLSGEIQPELD---ALDSLKILDISNNQI 432
S N + P GCF +L L +NN L + +L A S++ L +SN+Q+
Sbjct: 189 SSNQIKEFSP----GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 244
Query: 433 SGEIPLTLAGLK--SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
S T GLK +L ++D S NNL+ ND+ L+YF + N +
Sbjct: 245 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 294
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 12/167 (7%)
Query: 76 ACNFQTGHVVSINLTDTSLSGQVHPRLC---KLSFLEFLVLSSNAFTGRISTCFGGL--S 130
C G + + L + L + +LC + + L LS++ + +T F GL +
Sbjct: 199 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 258
Query: 131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN-------PELGGVFPGWVGNFSMNLE 183
L LDLSYN V D+ L L L+ N L G+F N +
Sbjct: 259 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 318
Query: 184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVL 230
K S S S +LK L+HL++E N++ G + + L+ L
Sbjct: 319 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 365
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL- 416
+L + ++P + T + V++L+HN L N QL +L V N +S +++PEL
Sbjct: 13 HLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELC 69
Query: 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA 476
L LK+L++ +N++S T A +L + SN++ N+ K NL ++
Sbjct: 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129
Query: 477 RNKLSG 482
N LS
Sbjct: 130 HNGLSS 135
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL--IGEIPARIGNLTYLQVIDL 379
++ L+ LDLSHN S +L++LQ L LSNN + + I + L+ ++L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 380 SHNMLSGSIPLNIVGCF----QLLALIVNNNNLSGEIQPELD---ALDSLKILDISNNQI 432
S N + P GCF +L L +NN L + +L A S++ L +SN+Q+
Sbjct: 179 SSNQIKEFSP----GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234
Query: 433 SGEIPLTLAGLK--SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
S T GLK +L ++D S NNL+ ND+ L+YF + N +
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 19/205 (9%)
Query: 76 ACNFQTGHVVSINLTDTSLSGQVHPRLC---KLSFLEFLVLSSNAFTGRISTCFGGL--S 130
C G + + L + L + +LC + + L LS++ + +T F GL +
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248
Query: 131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN-------PELGGVFPGWVGNFSMNLE 183
L LDLSYN V D+ L L L+ N L G+F N +
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308
Query: 184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNL--GSNRFSG-- 239
K S S S +LK L+HL++E N++ G + + L+ L SN F+
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368
Query: 240 --TLPCFAASAMS-LTVLKLDNNSV 261
T F + A S L +L L N +
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKI 393
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 339 EIPLKITELKSLQALFLSNNLLIGEIPAR--IGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
+IPL TEL L N+ +G I + G L +L ++L N L+G P G
Sbjct: 26 DIPLHTTEL-------LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78
Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSN 454
+ L + N + L LK L++ +NQIS +P + L SL ++ +SN
Sbjct: 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 100 PRLCKLSFLEFLVLSSNAFTGRIST--CFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLR 157
PR L E L+L+ N GRIS+ FG L L L+L N+ G+ P+A +++
Sbjct: 24 PRDIPLHTTE-LLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81
Query: 158 ELILKGN--PELGG-VFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKN 214
EL L N E+ +F G L+ L+ N +P S +L SL L+L N
Sbjct: 82 ELQLGENKIKEISNKMFLGL-----HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Query: 215 NLTGNVH 221
N H
Sbjct: 137 PFNCNCH 143
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 535 LPRSMVIRISVTAIDTNELS------FNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEY 588
+PR + + + ++ NEL +L V ++L N L G P ++
Sbjct: 23 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82
Query: 589 LNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
L L N + ++ L L+ L+L N ++ +PG+ L LT LNL+ N F+
Sbjct: 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%)
Query: 83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142
H+V + L L+G S ++ L L N + F GL LKTL+L N+
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 143 VGVVPDAIMKLRNLRELILKGNP 165
V+P + L +L L L NP
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNP 137
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 37/239 (15%)
Query: 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN 483
+LD+ NN IS GL+ L + +N +S A + L+ I++N L
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Query: 484 LPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSM---- 539
PN S +++ D K +P G F+ N N ++G + S P +
Sbjct: 118 PPNLPSSLVELRIHDNRIRK----VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173
Query: 540 --VIRIS---VTAIDT------NELSFNYQLFSAVGMDLSDNLLHGTIPK---GLFQLQG 585
+RIS +T I NEL ++ A+ +L D L + + + G Q++
Sbjct: 174 LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI--ELEDLLRYSKLYRLGLGHNQIRM 231
Query: 586 LEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
+E +LSF L +LR L L +N L+ ++P + L+ L ++ L N+ +
Sbjct: 232 IENGSLSF------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 36/175 (20%)
Query: 358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELD 417
+L + +P I T L +DL +N +S + G L AL++ NN +S +
Sbjct: 42 DLGLKAVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS 99
Query: 418 ALDSLKILDISNNQISGEIPLTL----------------------AGLKSLEIVDFSSNN 455
L L+ L IS N + EIP L +GL+++ ++ N
Sbjct: 100 PLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158
Query: 456 LSGS-LNDAITKWTNLKYFSIARNKLSG---NLPNWLFSF-------QAIQMMDF 499
L S L Y I+ KL+G +LP L QAI++ D
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDL 213
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTP-TPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNQLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTP-TPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNQLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 157
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N+ E+P L L L++LD L++N+L F+ S L+
Sbjct: 158 NNNLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 198
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
G L L +DLSHN L S+PL L L V+ N L+ L L L+ L +
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
N++ P L LE + ++NNL+
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 118/279 (42%), Gaps = 40/279 (14%)
Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNNQI 432
+ V++L+HN L P N QL L N++S +++PEL L LK+L++ +N++
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSIS-KLEPELCQILPLLKVLNLQHNEL 85
Query: 433 SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN--------- 483
S T +L +D SN++ ++ NL ++ N LS
Sbjct: 86 SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLE 145
Query: 484 -------LPNWLFSFQ----------AIQMMDFSTNKFMGFIPDGNFN-----FSLNFNK 521
N + + + +++ +D S+N F P G F F+L N
Sbjct: 146 NLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSP-GCFQTIGKLFALLLNN 204
Query: 522 SDIGRSMPAK-SFVLPRSMVIRISVTA---IDTNELSFN-YQLFSAVGMDLSDNLLHGTI 576
+ + + K + L + + +S+ + T+E +F+ + + +DLS N LH
Sbjct: 205 AQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVG 264
Query: 577 PKGLFQLQGLEYLNLSFNFLDGQVP-GLYRLRSLRALDL 614
L L YL+L +N + P Y L +LR L L
Sbjct: 265 NGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
L +L ILD+SNN I+ L GL++LEI+DF NNL+
Sbjct: 479 LRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 106/423 (25%), Positives = 175/423 (41%), Gaps = 96/423 (22%)
Query: 323 KAGLVLLDLSHNRFSG-EIPLKITELKSLQALFLSNNLLI--GEIPARIGNLTYLQVIDL 379
+ L+ LDLSHN S ++ + + L N +L E +GN + L+ +DL
Sbjct: 120 QKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGN-SSLRKLDL 178
Query: 380 SHNMLSGSIPLNIVGCFQ----LLALIVNNNNLSGEIQPELD---ALDSLKILDISNNQI 432
S N L P GCFQ L AL++NN L+ + +L + S++ L ++NNQ+
Sbjct: 179 SSNPLKEFSP----GCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQL 234
Query: 433 SGEIPLTLAGLK--SLEIVDFSSNNLSGSLNDAITKW----------------------- 467
T +GLK +L +D S NNL N + +
Sbjct: 235 LATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYG 294
Query: 468 -TNLKYFSIAR--NKLSGNL---PNWL-FSFQAIQMMDF-----------STNKFMGFIP 509
+NL+Y S+ R K S +L PN FSFQ ++ +++ +N F G +
Sbjct: 295 LSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVS 354
Query: 510 DGNFNFSLNFNKSDIGRSMPAKSFV-LPRSMVIRISVTA-----IDTNELSFNYQL-FSA 562
+ S F +++ ++FV L S ++ +++T I S+ QL
Sbjct: 355 LKYLSLSKTFTSL---QTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILD 411
Query: 563 VGMDLSDNLLHGTIPKGL-----FQLQGLEYLNLSFNFLDGQVPGLYRL----------- 606
+G++ + L G +GL L +YL LS + VP L RL
Sbjct: 412 LGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSF-ALVPSLQRLMLRRVALKNVD 470
Query: 607 ---------RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFP 657
R+L LDLS+N++ + L+ L +L+ +N+ + WK+ P
Sbjct: 471 ISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARL--WKRANPGGP 528
Query: 658 GAF 660
F
Sbjct: 529 VNF 531
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 27/118 (22%)
Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG---NPELGGVFPGWVGNFSM-- 180
F G S L+ LDLS N P + L L+L NP L + N S+
Sbjct: 167 FLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQN 226
Query: 181 ----------------------NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNL 216
NL +LD S+N+ S YL SL++L LE NN+
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNI 284
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 52/217 (23%)
Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
L+LS N S L + L SLQ L S+N + P + NLT L+ +D+S N +S
Sbjct: 134 LELSSNTISDISAL--SGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD-- 187
Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQP---------------------ELDALDSLKILDI 427
++++ L ++ NN +I P L +L +L LD+
Sbjct: 188 -ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 246
Query: 428 SNNQISGEIPLT--------------------LAGLKSLEIVDFSSNNLSGSLNDAITKW 467
+NNQIS PL+ LAGL +L ++ + N L I+
Sbjct: 247 ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI--SPISNL 304
Query: 468 TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
NL Y ++ N +S P + S +Q + FS NK
Sbjct: 305 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV 339
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 115/300 (38%), Gaps = 73/300 (24%)
Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
L L+ L+ L SSN T L+ L+ LD+S NK + + KL NL LI
Sbjct: 147 LSGLTSLQQLSFSSNQVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIA 202
Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH 221
N ++ + P +G + NL++L + N +L L +L LDL NN N+
Sbjct: 203 TNN-QISDITP--LGILT-NLDELSLNGNQLKD--IGTLASLTNLTDLDL-ANNQISNLA 255
Query: 222 DF--YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTXXX 279
L L LG+N+ S P +A LT L+L+ N +
Sbjct: 256 PLSGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQL------------------ 295
Query: 280 XXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339
+ISP + L L L N S
Sbjct: 296 -------EDISP----------------------------ISNLKNLTYLTLYFNNISDI 320
Query: 340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL-NIVGCFQL 398
P ++ L LQ LF SNN + ++ + + NLT + + HN +S PL N+ QL
Sbjct: 321 SP--VSSLTKLQRLFFSNNK-VSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 372 TYLQVIDLSHNMLSGSIPL--NIVGCFQLLALIVNNNNLS--GEIQPELDALDSLKILDI 427
T L+ +DLS N G I + N +G QL L ++NL E L +L +L LDI
Sbjct: 373 TSLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDI 428
Query: 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS-LNDAITKWTNLKYFSIARNKLSGNLPN 486
S+ GL SLE++ + N+ + L D T+ NL + +++ +L P
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 487 WLFSFQAIQMMDFSTNKFMG 506
S ++Q+++ S N F
Sbjct: 489 AFNSLSSLQVLNMSHNNFFS 508
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 99/239 (41%), Gaps = 54/239 (22%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIA 476
L SLK L ++N+ G + L SLE +D S N LS G + + T+LKY ++
Sbjct: 324 LKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLP 536
N + N+L + ++ +DF + + M S L
Sbjct: 382 FNGVITMSSNFL-GLEQLEHLDFQHSNL---------------------KQMSEFSVFLS 419
Query: 537 RSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFN- 594
+I + ++ T ++FN G+F L LE L ++ N
Sbjct: 420 LRNLIYLDISHTHT-RVAFN----------------------GIFNGLSSLEVLKMAGNS 456
Query: 595 FLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF--VPWK 650
F + +P ++ LR+L LDLS L P +SL L +LN+S+N+F P+K
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 65/163 (39%), Gaps = 38/163 (23%)
Query: 108 LEFLVLSSN--AFTGRISTCFGGLSGLKTLDLSYN-------KFVGVVP----------- 147
LEFL LS N +F G S G + LK LDLS+N F+G+
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 148 ------DAIMKLRNLRELILKGNP---ELGGVFPGWVGNFSMNLEKLDFSFNSFCGE-IP 197
+ LRNL L + G+F G LE L + NSF +P
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-----LEVLKMAGNSFQENFLP 463
Query: 198 ESLYYLKSLKHLDLEK---NNLTGNVHDFYQSLLVLNLGSNRF 237
+ L++L LDL + L+ + SL VLN+ N F
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 135 LIQSFKLPEYFSNLT-NLEHLDLSSN 159
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 150
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 151 LEHLDLSSNKI 161
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 372 TYLQVIDLSHNMLSGSIPL--NIVGCFQLLALIVNNNNLS--GEIQPELDALDSLKILDI 427
T L+ +DLS N G I + N +G QL L ++NL E L +L +L LDI
Sbjct: 78 TSLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDI 133
Query: 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS-LNDAITKWTNLKYFSIARNKLSGNLPN 486
S+ GL SLE++ + N+ + L D T+ NL + +++ +L P
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
Query: 487 WLFSFQAIQMMDFSTNKF 504
S ++Q+++ S N F
Sbjct: 194 AFNSLSSLQVLNMSHNNF 211
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 579 GLFQ-LQGLEYLNLSFN-FLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTL 635
G+F L LE L ++ N F + +P ++ LR+L LDLS L P +SL L +
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Query: 636 LNLSYNSFSGF--VPWK 650
LN+S+N+F P+K
Sbjct: 204 LNMSHNNFFSLDTFPYK 220
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 324 AGLVLLDLSHNRFSGE-IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
+ L +L ++ N F +P TEL++L L LS L P +L+ LQV+++SHN
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 67/167 (40%), Gaps = 38/167 (22%)
Query: 104 KLSFLEFLVLSSN--AFTGRISTCFGGLSGLKTLDLSYN-------KFVGVVP------- 147
KL+ L L LSSN +F G S G + LK LDLS+N F+G+
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 109
Query: 148 ----------DAIMKLRNLRELILKGNP---ELGGVFPGWVGNFSMNLEKLDFSFNSFCG 194
+ LRNL L + G+F G LE L + NSF
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-----LEVLKMAGNSFQE 164
Query: 195 E-IPESLYYLKSLKHLDLEK---NNLTGNVHDFYQSLLVLNLGSNRF 237
+P+ L++L LDL + L+ + SL VLN+ N F
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N+ E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNNLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
G L L +DLSHN L S+PL L L V+ N L+ L L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
N++ P L LE + ++NNL+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N+ E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNNLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
G L L +DLSHN L S+PL L L V+ N L+ L L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
N++ P L LE + ++NNL+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNQLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N+ E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNNLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
G L L +DLSHN L S+PL L L V+ N L+ L L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
N++ P L LE + ++NNL+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNQLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N+ E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNNLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
G L L +DLSHN L S+PL L L V+ N L+ L L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
N++ P L LE + ++NNL+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNDLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 19/178 (10%)
Query: 468 TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRS 527
T + YFSI+ KL G L F + + S ++ + + F F ++ +I +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV----FGFPQSY-IYEIFSN 301
Query: 528 MPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLE 587
M K+F + + ++ + + ++ + +D S+NLL T+ + L LE
Sbjct: 302 MNIKNFTVSGTRMVHMLCPS----------KISPFLHLDFSNNLLTDTVFENCGHLTELE 351
Query: 588 YLNLSFNFLD--GQVPGLY-RLRSLRALDLSHNSLT-GQIPGNISSLQELTLLNLSYN 641
L L N L ++ + +++SL+ LD+S NS++ + G+ S + L LN+S N
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 27/163 (16%)
Query: 353 LFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEI 412
L SNNLL + G+LT L+ + L N QL L +I
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMN--------------QLKEL--------SKI 366
Query: 413 QPELDALDSLKILDISNNQIS-GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLK 471
+ SL+ LDIS N +S E + KSL ++ SSN L+ ++ + +K
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK 424
Query: 472 YFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFN 514
+ NK+ +P + +A+Q ++ ++N+ +PDG F+
Sbjct: 425 VLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDGIFD 465
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 194 GEIPESLYYLKSLKHLDLEKNNLTGNVHD----FYQSLLVLNLGSNRFSGTLPCFAASAM 249
+I E +KSL+ LD+ +N+++ + + +SLL LN+ SN + T+ F
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI--FRCLPP 421
Query: 250 SLTVLKLDNNSVVGGIPTCIASLQAL 275
+ VL L +N + IP + L+AL
Sbjct: 422 RIKVLDLHSNK-IKSIPKQVVKLEAL 446
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 11/195 (5%)
Query: 313 LPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNL 371
+PS I T+K LDL N+ S L L+ L+L++N L +PA I L
Sbjct: 31 IPSNIPADTKK-----LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKEL 84
Query: 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNN 430
L+ + ++ N L ++P+ + LA + + N + P + D+L L L + N
Sbjct: 85 KNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF- 489
++ L SL+ + +N L A K T LK + N+L +P F
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFD 202
Query: 490 SFQAIQMMDFSTNKF 504
S + ++M+ N +
Sbjct: 203 SLEKLKMLQLQENPW 217
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 60/154 (38%), Gaps = 5/154 (3%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGV 170
L L SN + S F L+ L+ L L+ NK + +L+NL L + N
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL--QA 99
Query: 171 FPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDL---EKNNLTGNVHDFYQSL 227
P V + +NL +L N P L L +L L E +L V D SL
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 228 LVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261
L L +N+ L LKLDNN +
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 32/187 (17%)
Query: 313 LPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLL----------- 360
LPSK K L LL L+ N+ +P I ELK+L+ L++++N L
Sbjct: 52 LPSKAFHRLTK--LRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQL 108
Query: 361 ------------IGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNIVGCF-QLLALIVNNN 406
+ +P R+ +LT L + L +N L S+P + L L + NN
Sbjct: 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNN 167
Query: 407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI-- 464
L + D L LK L + NNQ+ L+ L+++ N + N I
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYM 227
Query: 465 TKWTNLK 471
KW K
Sbjct: 228 AKWLKKK 234
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 74/188 (39%), Gaps = 51/188 (27%)
Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPD-AIMKLRNLRELILK 162
L LE L L N+ F GL+ L TL+L ++ ++ V+P A L LREL L+
Sbjct: 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL-FDNWLTVIPSGAFEYLSKLRELWLR 155
Query: 163 GNP------------------ELG----------GVFPGWVG----NFSM---------- 180
NP +LG G F G N M
Sbjct: 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT 215
Query: 181 ---NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT---GNVHDFYQSLLVLNLGS 234
LE+L+ S N F P S + L SLK L + + ++ N D SL+ LNL
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275
Query: 235 NRFSGTLP 242
N S +LP
Sbjct: 276 NNLS-SLP 282
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 374 LQVIDLSHNMLSGSIPL--NIVGCFQLLALIVNNNNLS--GEIQPELDALDSLKILDISN 429
L+ +DLS N G I + N +G QL L ++NL E L +L +L LDIS+
Sbjct: 399 LKYLDLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISH 454
Query: 430 NQISGEIPLTLAGLKSLEIVDFSSNNLSGS-LNDAITKWTNLKYFSIARNKLSGNLPNWL 488
GL SLE++ + N+ + L D T+ NL + +++ +L P
Sbjct: 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514
Query: 489 FSFQAIQMMDFSTNKFMG 506
S ++Q+++ S N F
Sbjct: 515 NSLSSLQVLNMSHNNFFS 532
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 52/230 (22%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIA 476
L SLK L ++N+ G + L SLE +D S N LS G + + +LKY ++
Sbjct: 348 LKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405
Query: 477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLP 536
N + N+L + ++ +DF + + M S L
Sbjct: 406 FNGVITMSSNFL-GLEQLEHLDFQHSNL---------------------KQMSEFSVFLS 443
Query: 537 RSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFN- 594
+I + ++ T ++FN G+F L LE L ++ N
Sbjct: 444 LRNLIYLDISHTHT-RVAFN----------------------GIFNGLSSLEVLKMAGNS 480
Query: 595 FLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 643
F + +P ++ LR+L LDLS L P +SL L +LN+S+N+F
Sbjct: 481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 159 LIQSFKLPEYFSNLT-NLEHLDLSSN 183
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 174
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 175 LEHLDLSSNKI 185
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 575 TIPKGLF-QLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQE 632
++P G+F +L L YLNL+ N L G++ +L +L LDLS+N L G L +
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 633 LTLLNLSYNSF 643
L L L N
Sbjct: 183 LKDLRLYQNQL 193
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 575 TIPKGLF-QLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQE 632
++P G+F +L L+ L L N L G++ +L +L L+L+HN L G L
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158
Query: 633 LTLLNLSYNSFSGF 646
LT L+LSYN
Sbjct: 159 LTELDLSYNQLQSL 172
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
KL+ L +L L+ N F L+ L LDLSYN+ + KL L++L L
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 164 N 164
N
Sbjct: 191 N 191
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 13/66 (19%)
Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG------EIPARIGNLTYLQVID 378
GLV +DLS+N + +++ L+ L++SNN L+ IP L+V+D
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-------LKVLD 307
Query: 379 LSHNML 384
LSHN L
Sbjct: 308 LSHNHL 313
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 135 LDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG 194
LDL NK + L+NL LIL N ++ + PG + LE+L S N
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPL-VKLERLYLSKNQL-K 113
Query: 195 EIPESLYYLKSLKHLDLEKNNLT---GNVHDFYQSLLVLNLGSN 235
E+PE + K+L+ L + +N +T +V + ++V+ LG+N
Sbjct: 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 135 LDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG 194
LDL NK + L+NL LIL N ++ + PG + LE+L S N
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPL-VKLERLYLSKNQL-K 113
Query: 195 EIPESLYYLKSLKHLDLEKNNLT---GNVHDFYQSLLVLNLGSN 235
E+PE + K+L+ L + +N +T +V + ++V+ LG+N
Sbjct: 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 13/66 (19%)
Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG------EIPARIGNLTYLQVID 378
GLV +DLS+N + +++ L+ L++SNN L+ IP L+V+D
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-------LKVLD 301
Query: 379 LSHNML 384
LSHN L
Sbjct: 302 LSHNHL 307
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 52/217 (23%)
Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
L+LS N S L + L SLQ L S+N + P + NLT L+ +D+S N +S
Sbjct: 134 LELSSNTISDISAL--SGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD-- 187
Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQP---------------------ELDALDSLKILDI 427
++++ L ++ NN +I P L +L +L LD+
Sbjct: 188 -ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 246
Query: 428 SNNQISGEIPLT--------------------LAGLKSLEIVDFSSNNLSGSLNDAITKW 467
+NNQIS PL+ LAGL +L ++ + N L I+
Sbjct: 247 ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI--SPISNL 304
Query: 468 TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
NL Y ++ N +S P + S +Q + F NK
Sbjct: 305 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 339
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 52/217 (23%)
Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
L+LS N S L + L SLQ L S+N + P + NLT L+ +D+S N +S
Sbjct: 134 LELSSNTISDISAL--SGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD-- 187
Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQP---------------------ELDALDSLKILDI 427
++++ L ++ NN +I P L +L +L LD+
Sbjct: 188 -ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 246
Query: 428 SNNQISGEIPLT--------------------LAGLKSLEIVDFSSNNLSGSLNDAITKW 467
+NNQIS PL+ LAGL +L ++ + N L I+
Sbjct: 247 ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI--SPISNL 304
Query: 468 TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
NL Y ++ N +S P + S +Q + F NK
Sbjct: 305 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 339
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 36/184 (19%)
Query: 346 ELKSLQALFLSNNLLIGEI---PARIGNLTYLQVIDLSHNML-----SGSIPLNIVGCFQ 397
LKSL+ L LS NL++ E A G LQ + LS N L +G I L +
Sbjct: 358 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN--- 414
Query: 398 LLALIVNNNNLSGEIQPELDAL---DSLKILDISNNQI---SGEIPLTLAGLKSLEIVDF 451
L +L ++ N P D+ + ++ L++S+ I IP ++LE++D
Sbjct: 415 LTSLDISRNTF----HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDV 464
Query: 452 SSNNLSGSLNDAITKW-TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD 510
S+NNL D+ + + L+ I+RNKL LP+ F + +M ++N+ +PD
Sbjct: 465 SNNNL-----DSFSLFLPRLQELYISRNKLK-TLPDASL-FPVLLVMKIASNQLKS-VPD 516
Query: 511 GNFN 514
G F+
Sbjct: 517 GIFD 520
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 29/114 (25%)
Query: 127 GGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186
G + +K+LDLS+NK + + NL+ LILK +
Sbjct: 49 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS---------------------- 86
Query: 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRF 237
N+ G ++ Y L SL+HLDL N+L+ ++ SL LNL N +
Sbjct: 87 -RINTIEG---DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 136
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 36/184 (19%)
Query: 346 ELKSLQALFLSNNLLIGEI---PARIGNLTYLQVIDLSHNML-----SGSIPLNIVGCFQ 397
LKSL+ L LS NL++ E A G LQ + LS N L +G I L +
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN--- 388
Query: 398 LLALIVNNNNLSGEIQPELDAL---DSLKILDISNNQI---SGEIPLTLAGLKSLEIVDF 451
L +L ++ N P D+ + ++ L++S+ I IP ++LE++D
Sbjct: 389 LTSLDISRNTF----HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDV 438
Query: 452 SSNNLSGSLNDAITKW-TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD 510
S+NNL D+ + + L+ I+RNKL LP+ F + +M S N+ +PD
Sbjct: 439 SNNNL-----DSFSLFLPRLQELYISRNKLK-TLPDASL-FPVLLVMKISRNQLKS-VPD 490
Query: 511 GNFN 514
G F+
Sbjct: 491 GIFD 494
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 29/114 (25%)
Query: 127 GGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186
G + +K+LDLS+NK + + NL+ LILK +
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS---------------------- 60
Query: 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRF 237
N+ G ++ Y L SL+HLDL N+L+ ++ SL LNL N +
Sbjct: 61 -RINTIEG---DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 36/188 (19%)
Query: 343 KITELK------SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
++T+LK +L+ L +S+N + +I + + LT L+ + ++N +S PL I+
Sbjct: 161 QVTDLKPLANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITPLGILTNL 218
Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT----------------- 439
L+L N N +I L +L +L LD++NNQIS PL+
Sbjct: 219 DELSL---NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 274
Query: 440 ---LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496
LAGL +L ++ + N L I+ NL Y ++ N +S P + S +Q
Sbjct: 275 ISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 330
Query: 497 MDFSTNKF 504
+ FS NK
Sbjct: 331 LFFSNNKV 338
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
L S+K LD+++ QI+ P LAGL +L+++ N ++ + TNL+Y SI N
Sbjct: 112 LQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNN 167
Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP 509
+++ P L + + + NK P
Sbjct: 168 QVNDLTP--LANLSKLTTLRADDNKISDISP 196
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385
L+ L+L N+ + PLK L + L LS N L + I L ++ +DL+ ++
Sbjct: 71 LIGLELKDNQITDLTPLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT 126
Query: 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS 445
PL + Q+L L +N I P L L +L+ L I NNQ++ P LA L
Sbjct: 127 DVTPLAGLSNLQVLYLDLNQ---ITNISP-LAGLTNLQYLSIGNNQVNDLTP--LANLSK 180
Query: 446 LEIVDFSSNNLS 457
L + N +S
Sbjct: 181 LTTLRADDNKIS 192
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
F L+ +DLS N+ + PDA LR+L L+L GN
Sbjct: 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 12/162 (7%)
Query: 352 ALFLSNNLL------IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405
A SNN++ + EIP + + I L N + IP ++ L I +
Sbjct: 8 ACTCSNNIVDCRGKGLTEIPTNLPET--ITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLS 64
Query: 406 NNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTL-AGLKSLEIVDFSSNNLSGSLNDA 463
NN E+ P+ L SL L + N+I+ E+P +L GL SL+++ ++N ++ DA
Sbjct: 65 NNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINXLRVDA 123
Query: 464 ITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
NL S+ NKL +AIQ M + N F+
Sbjct: 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
F L+ +DLS N+ + PDA LR+L L+L GN
Sbjct: 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 12/162 (7%)
Query: 352 ALFLSNNLL------IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405
A SNN++ + EIP + + I L N + IP ++ L I +
Sbjct: 8 ACTCSNNIVDCRGKGLTEIPTNLPET--ITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLS 64
Query: 406 NNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTL-AGLKSLEIVDFSSNNLSGSLNDA 463
NN E+ P+ L SL L + N+I+ E+P +L GL SL+++ ++N ++ DA
Sbjct: 65 NNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDA 123
Query: 464 ITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
NL S+ NKL +AIQ M + N F+
Sbjct: 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L GLK + + + + + +RNL L L+ N E P + + NLE ++F
Sbjct: 122 LHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIE---EMPSHLFDDLENLESIEFG 178
Query: 189 FNSFCGEIPESLY-YLKSLKHLDLEKNNLTG---NVHDFYQSLLVLNLGSNRFSGTLP 242
N ++P ++ + LK L+L N L + D SL + L +N + + P
Sbjct: 179 SNKL-RQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 43/208 (20%)
Query: 367 RIGNLTYLQVIDLSHNMLSGSIP----LNIVGCFQLLALIVNNNNLSGEI-QPELDALDS 421
RIG + +Q + ML G P L+ +G LI ++NL I + LD L
Sbjct: 68 RIGEVDRVQ---MRRCMLPGHTPIASILDYLGIVSPTTLIFESDNLGMNITRQHLDRLHG 124
Query: 422 LKILDISNNQISG----------------------EIPLTL-AGLKSLEIVDFSSNNLSG 458
LK + +++ E+P L L++LE ++F SN L
Sbjct: 125 LKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQ 184
Query: 459 SLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTNKFMGFIPDGNFNFSL 517
K LK ++A N+L ++P+ +F ++Q + TN + P ++ S
Sbjct: 185 MPRGIFGKMPKLKQLNLASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY-LSR 242
Query: 518 NFNKSDI---------GRSMPAKSFVLP 536
NK+ G P +S + P
Sbjct: 243 WLNKNSQKEQGSAKCSGSGKPVRSIICP 270
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%)
Query: 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYN 140
T V S++L++ ++ + L + L+ LVL+SN F L L+ LDLSYN
Sbjct: 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Query: 141 KFVGVVPDAIMKLRNLRELILKGNP 165
+ L +L L L GNP
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNP 135
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 561 SAVGMDLSD----NLLHG--TIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDL 614
S + M+ +D +L H T+ L QL + +L+LS N L P L LR L L
Sbjct: 434 SVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493
Query: 615 SHNSLTGQIPG--NISSLQELTLLNLSYNSFSGFVP 648
S N+L + G N+ LQEL L N + P
Sbjct: 494 SDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQP 528
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 561 SAVGMDLSD----NLLHG--TIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDL 614
S + M+ +D +L H T+ L QL + +L+LS N L P L LR L L
Sbjct: 434 SVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493
Query: 615 SHNSLTGQIPG--NISSLQELTLLNLSYNSFSGFVP 648
S N+L + G N+ LQEL L N + P
Sbjct: 494 SDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQP 528
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 36/188 (19%)
Query: 343 KITELK------SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
++T+LK +L+ L +S+N + +I + + LT L+ + ++N +S PL I+
Sbjct: 165 QVTDLKPLANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITPLGILTNL 222
Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT----------------- 439
L+L N N +I L +L +L LD++NNQIS PL+
Sbjct: 223 DELSL---NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 278
Query: 440 ---LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496
LAGL +L ++ + N L I+ NL Y ++ N +S P + S +Q
Sbjct: 279 ISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 334
Query: 497 MDFSTNKF 504
+ F+ NK
Sbjct: 335 LFFANNKV 342
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 34/194 (17%)
Query: 74 GVACNFQTGHVVSINLT--DTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSG 131
GV C + G++ +++L+ D S +L LS L+ L LS N G S F
Sbjct: 339 GVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQ 398
Query: 132 LKTLDLSYNKFVGVVPDA-------------------------IMKLRNLRELILKGNPE 166
L+ LDL++ + P + + L LR L LKGN
Sbjct: 399 LELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Query: 167 LGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP---ESLYYLKSLKHLDLEKNNLTGNVHDF 223
G N + L+ S CG + ++ + L + H+DL N+LT + D
Sbjct: 459 QDGTITK--TNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDS 516
Query: 224 YQSL--LVLNLGSN 235
L + LNL +N
Sbjct: 517 LSHLKGIYLNLAAN 530
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 69/178 (38%), Gaps = 29/178 (16%)
Query: 322 EKAG-LVLLDLSHNRFSGE--IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVID 378
EK G L LDLSHN L++ L LQ L LS+N +G L+++D
Sbjct: 344 EKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLD 403
Query: 379 LSHNMLSGSIP------------LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILD 426
L+ L + P LN+ CF L Q L L L+ L+
Sbjct: 404 LAFTRLHINAPQSPFQNLHFLQVLNLTYCF-----------LDTSNQHLLAGLPVLRHLN 452
Query: 427 ISNNQI-SGEIPLT--LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481
+ N G I T L + SLE++ SS L A + + ++ N L+
Sbjct: 453 LKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLT 510
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%)
Query: 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYN 140
T V S++L++ ++ + L + L+ LVL+SN F L L+ LDLSYN
Sbjct: 25 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 84
Query: 141 KFVGVVPDAIMKLRNLRELILKGNP 165
+ L +L L L GNP
Sbjct: 85 YLSNLSSSWFKPLSSLTFLNLLGNP 109
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 69/178 (38%), Gaps = 12/178 (6%)
Query: 313 LPSKI-AQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNL 371
+P+ I AQTT LDL N EL SL L+L N L L
Sbjct: 22 VPTGIPAQTT------YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL 75
Query: 372 TYLQVIDLSHNMLSGSIPLNIVGCF-QLLALIVNNNNLSGEIQPELDALDSLKILDISNN 430
T L ++LS N L S+P + QL L +N N L D L LK L + N
Sbjct: 76 TSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
Query: 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDA--ITKWTNLKYFSIARNKLSGNLPN 486
Q+ L SL+ + N + +++W N K+ + RN P+
Sbjct: 135 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN-KHSGVVRNSAGSVAPD 191
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
S+P I Q L + N+L D L SL L + N++ L SL
Sbjct: 21 SVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78
Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS-TNKFM 505
++ S+N L N K T LK ++ N+L +LP+ +F + Q+ D +
Sbjct: 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFD-KLTQLKDLRLYQNQL 136
Query: 506 GFIPDGNFN 514
+PDG F+
Sbjct: 137 KSVPDGVFD 145
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELILK--GN 164
L L L SNA G + F GL+ L+ LDLS N + VV P L +L L L G
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 165 PELG-GVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNL 216
ELG G+F G L+ L N+ + L +L HL L N +
Sbjct: 117 QELGPGLFRGLAA-----LQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
L S+K LD+++ QI+ P LAGL +L+++ N ++ + TNL+Y SI
Sbjct: 106 LQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNA 161
Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP 509
++S P L + + + NK P
Sbjct: 162 QVSDLTP--LANLSKLTTLKADDNKISDISP 190
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNNQISGEIPL-TLAGL 443
S+P I Q+L L ++N +++P + D+L +LK L + +NQ+ G +P+ L
Sbjct: 32 ASVPAGIPTNAQILYL---HDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL 87
Query: 444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503
L ++D +N L+ + + +LK + NKL+ LP + + + N+
Sbjct: 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146
Query: 504 FMGFIPDGNFN 514
IP G F+
Sbjct: 147 LKS-IPHGAFD 156
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Query: 109 EFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG 168
+ L L N T F L LK L L N+ G +P + ++ G +L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 169 GVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL 227
V P V + ++L++L N E+P + L L HL L++N L H + L
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 24/190 (12%)
Query: 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
+L L L ++ N I +GL SL+ + NL+ N I LK ++A
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 478 NKL-SGNLPNWLFSFQAIQMMDFSTNKFMG-FIPDGNFNFSLNFNKSDIGRSMPAKSFVL 535
N + S LP + + ++ +D S+NK + D + + S+ +F+
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 194
Query: 536 PRSMV-IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF-QLQGLEYLNLSF 593
P + IR+ A+DTN+L ++P G+F +L L+ + L
Sbjct: 195 PGAFKEIRLKELALDTNQLK--------------------SVPDGIFDRLTSLQKIWLHT 234
Query: 594 NFLDGQVPGL 603
N D P +
Sbjct: 235 NPWDCSCPRI 244
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 136 LIQSFKLPEYFSNLT-NLEHLDLSSN 160
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 151
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 152 LEHLDLSSNKI 162
>pdb|3T04|D Chain D, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
Length = 103
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
LE+VD + +L S + + W N+KY+ I + G+ P F+ +ST
Sbjct: 14 LEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGY----YSTATIS 69
Query: 506 GFIPDGNFNFSL 517
G P ++ ++
Sbjct: 70 GLKPGVDYTITV 81
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 24/190 (12%)
Query: 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
+L L L ++ N I +GL SL+ + NL+ N I LK ++A
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 135
Query: 478 NKL-SGNLPNWLFSFQAIQMMDFSTNKFMG-FIPDGNFNFSLNFNKSDIGRSMPAKSFVL 535
N + S LP + + ++ +D S+NK + D + + S+ +F+
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 195
Query: 536 PRSMV-IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF-QLQGLEYLNLSF 593
P + IR+ A+DTN+L ++P G+F +L L+ + L
Sbjct: 196 PGAFKEIRLKELALDTNQLK--------------------SVPDGIFDRLTSLQKIWLHT 235
Query: 594 NFLDGQVPGL 603
N D P +
Sbjct: 236 NPWDCSCPRI 245
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 136
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 137 LIQSFKLPEYFSNLT-NLEHLDLSSN 161
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 152
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 153 LEHLDLSSNKI 163
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 88/215 (40%), Gaps = 12/215 (5%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIA 476
L SLK L ++N+ G + L SLE +D S N LS G + + T+LKY ++
Sbjct: 324 LKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLP 536
N + N+L + ++ +DF + F N DI + +F
Sbjct: 382 FNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 537 RSMVIRISVTAIDTNELSFNY------QLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLN 590
+ + + V + N N+ +L + +DLS L P L L+ LN
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 591 LSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIP 624
++ N L G++ RL SL+ + L N P
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 66/162 (40%), Gaps = 38/162 (23%)
Query: 108 LEFLVLSSN--AFTGRISTCFGGLSGLKTLDLSYN-------KFVGVVP----------- 147
LEFL LS N +F G S G + LK LDLS+N F+G+
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 148 ------DAIMKLRNLRELILKGNP---ELGGVFPGWVGNFSMNLEKLDFSFNSFCGE-IP 197
+ LRNL L + G+F G LE L + NSF +P
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-----LEVLKMAGNSFQENFLP 463
Query: 198 ESLYYLKSLKHLDLEK---NNLTGNVHDFYQSLLVLNLGSNR 236
+ L++L LDL + L+ + SL VLN+ SN+
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 135 LIQSFKLPEYFSNLT-NLEHLDLSSN 159
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIM-KLRNLRELILK 162
+L L FL LS T F LS L+ L+++ N+ + VPD I +L +L+++ L
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLH 526
Query: 163 GNP 165
NP
Sbjct: 527 TNP 529
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 150
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 151 LEHLDLSSNKI 161
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 24/190 (12%)
Query: 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
+L L L ++ N I +GL SL+ + NL+ N I LK ++A
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 478 NKL-SGNLPNWLFSFQAIQMMDFSTNKFMG-FIPDGNFNFSLNFNKSDIGRSMPAKSFVL 535
N + S LP + + ++ +D S+NK + D + + S+ +F+
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Query: 536 PRSMV-IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF-QLQGLEYLNLSF 593
P + IR+ A+DTN+L ++P G+F +L L+ + L
Sbjct: 194 PGAFKEIRLKELALDTNQLK--------------------SVPDGIFDRLTSLQKIWLHT 233
Query: 594 NFLDGQVPGL 603
N D P +
Sbjct: 234 NPWDCSCPRI 243
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 135 LIQSFKLPEYFSNLT-NLEHLDLSSN 159
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 150
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 151 LEHLDLSSNKI 161
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
L+ L L LS N S F L L+ LDLSYN + + + L NL+EL L N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 24/153 (15%)
Query: 126 FGGL--SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLE 183
F GL SG+KT DLS +K ++ +L +L L N E+ + + +L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLT-HLL 326
Query: 184 KLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLP 242
KL+ S N F G I ++ L L+ LDL N++ LG F G LP
Sbjct: 327 KLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRA-------------LGDQSFLG-LP 371
Query: 243 CFAASAMSLTVLKLDNNSVVGGIPTCIASLQAL 275
A+ LK SV GI + SLQ +
Sbjct: 372 NLKELALDTNQLK----SVPDGIFDRLTSLQKI 400
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSN--AFTGRISTCFGGLSGLKTLDLSY 139
HV ++L+ S++ +L L+FL + R +T F GLS L L L Y
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT-FRGLSSLIILKLDY 88
Query: 140 NKFVGVVPDAIMKLRNLRELILKGNPELGGVFPG 173
N+F+ + A L NL L L G V G
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG 122
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 24/190 (12%)
Query: 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
+L L L ++ N I +GL SL+ + NL+ N I LK ++A
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 478 NKL-SGNLPNWLFSFQAIQMMDFSTNKFMG-FIPDGNFNFSLNFNKSDIGRSMPAKSFVL 535
N + S LP + + ++ +D S+NK + D + + S+ +F+
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 194
Query: 536 PRSMV-IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF-QLQGLEYLNLSF 593
P + IR+ A+DTN+L ++P G+F +L L+ + L
Sbjct: 195 PGAFKEIRLKELALDTNQLK--------------------SVPDGIFDRLTSLQKIWLHT 234
Query: 594 NFLDGQVPGL 603
N D P +
Sbjct: 235 NPWDCSCPRI 244
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 136 LIQSFKLPEYFSNLT-NLEHLDLSSN 160
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 151
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 152 LEHLDLSSNKI 162
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 13/187 (6%)
Query: 313 LPSKIAQTTEKAGLV---LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
+PS I TEK L L LS F G L L L L N L
Sbjct: 29 VPSGIPADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQTLSAGVFD 80
Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCF-QLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
+LT L + L++N L+ S+PL + QL L + N L D L LK L ++
Sbjct: 81 DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL 488
NQ+ L +L+ + S+N L + A + L+ ++ N+ + L
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETL 199
Query: 489 FSFQAIQ 495
+ Q I+
Sbjct: 200 YLSQWIR 206
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 36/188 (19%)
Query: 343 KITELK------SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
++T+LK +L+ L +S+N + +I + + LT L+ + ++N +S PL I+
Sbjct: 166 QVTDLKPLANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITPLGILTNL 223
Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT----------------- 439
L+L N N +I L +L +L LD++NNQIS PL+
Sbjct: 224 DELSL---NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 279
Query: 440 ---LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496
LAGL +L ++ + N L I+ NL Y ++ N +S P + S +Q
Sbjct: 280 ISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335
Query: 497 MDFSTNKF 504
+ F NK
Sbjct: 336 LFFYNNKV 343
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
+LS L+ + + + +GL+TL L+ N + P +I L LREL ++
Sbjct: 102 RLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRA 159
Query: 164 NPELGGVFPGWVGNFS-------MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNL 216
PEL + + +NL+ L + +P S+ L++LK L + + L
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPL 218
Query: 217 TG 218
+
Sbjct: 219 SA 220
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 13/187 (6%)
Query: 313 LPSKIAQTTEKAGLV---LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
+PS I TEK L L LS F G L L L L N L
Sbjct: 29 VPSGIPADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQTLSAGVFD 80
Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCF-QLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
+LT L + L++N L+ S+PL + QL L + N L D L LK L ++
Sbjct: 81 DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL 488
NQ+ L +L+ + S+N L + A + L+ ++ N+ + L
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199
Query: 489 FSFQAIQ 495
+ Q I+
Sbjct: 200 YLSQWIR 206
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDF 187
GLS LK L LS NKF + + +L L +KGN + + G + N NL +LD
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDL 357
Query: 188 SFNSF-----CGEIPESLYYLKSL 206
S + C +L +L+SL
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSL 381
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 24/190 (12%)
Query: 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
+L L L ++ N I +GL SL+ + NL+ N I LK ++A
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAH 135
Query: 478 NKL-SGNLPNWLFSFQAIQMMDFSTNKFMG-FIPDGNFNFSLNFNKSDIGRSMPAKSFVL 535
N + S LP + + ++ +D S+NK + D + + S+ +F+
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 195
Query: 536 PRSMV-IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF-QLQGLEYLNLSF 593
P + IR+ A+DTN+L ++P G+F +L L+ + L
Sbjct: 196 PGAFKEIRLKELALDTNQLK--------------------SVPDGIFDRLTSLQKIWLHT 235
Query: 594 NFLDGQVPGL 603
N D P +
Sbjct: 236 NPWDCSCPRI 245
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHN 136
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 137 LIQSFKLPEYFSNLT-NLEHLDLSSN 161
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 152
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 153 LEHLDLSSNKI 163
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 36/188 (19%)
Query: 343 KITELK------SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
++T+LK +L+ L +S+N + +I + + LT L+ + ++N +S PL I+
Sbjct: 161 QVTDLKPLANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITPLGILTNL 218
Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT----------------- 439
L+L N N +I L +L +L LD++NNQIS PL+
Sbjct: 219 DELSL---NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 274
Query: 440 ---LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496
LAGL +L ++ + N L I+ NL Y ++ N +S P + S +Q
Sbjct: 275 ISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 330
Query: 497 MDFSTNKF 504
+ F NK
Sbjct: 331 LFFYNNKV 338
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 68/141 (48%), Gaps = 12/141 (8%)
Query: 372 TYLQVIDLSHNMLS----GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI 427
+Y ++DLSHN LS P + L +L++++N+L+ + +L+ LD+
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTN---LHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95
Query: 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW 487
S+N + + L++LE++ +N++ +A L+ +++N++S P
Sbjct: 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154
Query: 488 LF----SFQAIQMMDFSTNKF 504
L + ++D S+NK
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKL 175
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIM-KLRNLRELILKGNP 165
LE L L+ N F GL+ LK L L N+ + VPD I +L +L+++ L NP
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 358
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSN--AFTGRISTCFGGLSGLKTLDLSY 139
HV ++L+ S++ +L L+FL + R +T F GLS L L L Y
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT-FRGLSSLIILKLDY 88
Query: 140 NKFVGVVPDAIMKLRNLRELILKGNPELGGVFPG 173
N+F+ + A L NL L L G V G
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG 122
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 495 QMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELS 554
Q MD +K IP N L+FN I +S +F + +S I+T E
Sbjct: 17 QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNF--SELQWLDLSRCEIETIEDK 74
Query: 555 FNYQLFSAVGMDLSDNLLHGTIP---KGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRA 611
+ L + L+ N + P GL L+ L + L+ G +L +L+
Sbjct: 75 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG--QLITLKK 132
Query: 612 LDLSHNSL-TGQIPGNISSLQELTLLNLSYN 641
L+++HN + + ++P S+L L ++LSYN
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 495 QMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELS 554
Q MD +K IP N L+FN I +S +F + +S I+T E
Sbjct: 12 QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNF--SELQWLDLSRCEIETIEDK 69
Query: 555 FNYQLFSAVGMDLSDNLLHGTIP---KGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRA 611
+ L + L+ N + P GL L+ L + L+ G +L +L+
Sbjct: 70 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG--QLITLKK 127
Query: 612 LDLSHNSL-TGQIPGNISSLQELTLLNLSYN 641
L+++HN + + ++P S+L L ++LSYN
Sbjct: 128 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 74/177 (41%), Gaps = 16/177 (9%)
Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYN-KFVGVVPDAIMKLRNLRELILK--GN 164
L L L SN + F GL+ L+ LDLS N + V P L L L L G
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 165 PELG-GVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF 223
ELG G+F G L+ L N+ ++ L +L HL L N ++
Sbjct: 117 QELGPGLFRGLAA-----LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 171
Query: 224 YQSLLVLN---LGSNRFSGTLP-CFAASAMSLTVLKLDNNSVVGGIPT-CIASLQAL 275
++ L L+ L NR + P F +T+ NN + +PT +A L+AL
Sbjct: 172 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN--LSALPTEALAPLRAL 226
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 58/162 (35%), Gaps = 1/162 (0%)
Query: 318 AQTTEKAGLVLLDLSHN-RFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV 376
A T A L LDLS N + P L L L L L P L LQ
Sbjct: 73 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 132
Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
+ L N L L L ++ N +S + L SL L + N+++
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 437 PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
P L L + +NNLS +A+ L+Y + N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 74/177 (41%), Gaps = 16/177 (9%)
Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYN-KFVGVVPDAIMKLRNLRELILK--GN 164
L L L SN + F GL+ L+ LDLS N + V P L L L L G
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 165 PELG-GVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF 223
ELG G+F G L+ L N+ ++ L +L HL L N ++
Sbjct: 118 QELGPGLFRGLAA-----LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172
Query: 224 YQSLLVLN---LGSNRFSGTLP-CFAASAMSLTVLKLDNNSVVGGIPT-CIASLQAL 275
++ L L+ L NR + P F +T+ NN + +PT +A L+AL
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN--LSALPTEALAPLRAL 227
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 58/162 (35%), Gaps = 1/162 (0%)
Query: 318 AQTTEKAGLVLLDLSHN-RFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV 376
A T A L LDLS N + P L L L L L P L LQ
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
+ L N L L L ++ N +S + L SL L + N+++
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 437 PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
P L L + +NNLS +A+ L+Y + N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|2R00|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 311 GPLPSKIAQTTEKAGLVLLD-LSHNRFSGEIPLKITEL 347
G L +K A +AG+V++D SH R+ +IPL + E+
Sbjct: 75 GELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEV 112
>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
Length = 197
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Query: 508 IPDGNFNFSLN--FNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGM 565
IPD F LN +S A+ L + I+VT + E + N +
Sbjct: 17 IPDSTFKAYLNGLLGQSSTANITEAQXNSLTYITLANINVTDLTGIEYAHNIK------- 69
Query: 566 DLSDNLLHGTIPKGLFQLQGLEYLNL-SFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP 624
DL+ N +H T + L LE L + + ++P L L SL LD+SH++ I
Sbjct: 70 DLTINNIHATNYNPISGLSNLERLRIXGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129
Query: 625 GNISSLQELTLLNLSYN-SFSGFVPWK 650
I++L ++ ++LSYN + + P K
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIXPLK 156
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF-QLLALIVNNNNLS 409
Q L+L+NN + P +L LQ + + N L+ +IP + QL L +N+N+L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 410 GEIQPELDALDSLKILDISNN 430
+ D L SL + + NN
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNN 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,722,513
Number of Sequences: 62578
Number of extensions: 798095
Number of successful extensions: 2672
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1727
Number of HSP's gapped (non-prelim): 564
length of query: 732
length of database: 14,973,337
effective HSP length: 106
effective length of query: 626
effective length of database: 8,340,069
effective search space: 5220883194
effective search space used: 5220883194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)