Query 004747
Match_columns 732
No_of_seqs 879 out of 5820
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 12:14:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-76 4.7E-81 711.6 46.8 578 40-670 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.9E-61 4.2E-66 581.9 39.0 510 106-667 69-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 1.4E-43 3E-48 347.1 -13.2 472 85-644 48-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 7.4E-38 1.6E-42 320.0 7.1 364 107-477 79-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.1E-40 4.6E-45 324.8 -13.9 451 83-620 69-541 (565)
6 KOG4194 Membrane glycoprotein 100.0 3E-37 6.6E-42 315.5 8.0 367 131-504 79-451 (873)
7 KOG0618 Serine/threonine phosp 100.0 2.5E-37 5.4E-42 332.8 -6.3 396 84-504 23-419 (1081)
8 KOG0618 Serine/threonine phosp 100.0 7.3E-35 1.6E-39 313.8 -2.5 395 83-505 46-443 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.3E-34 5E-39 296.1 -2.6 366 82-481 7-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2.2E-34 4.8E-39 296.2 -3.1 360 228-643 10-374 (1255)
11 PLN03210 Resistant to P. syrin 99.9 6.2E-23 1.3E-27 247.9 26.1 339 148-503 552-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1E-22 2.2E-27 246.1 25.9 337 243-642 552-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 6.8E-25 1.5E-29 216.0 -1.6 405 225-641 67-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 4.1E-22 8.8E-27 223.3 15.6 262 274-649 202-463 (788)
15 KOG4237 Extracellular matrix p 99.9 4.1E-24 9E-29 210.5 -2.4 409 180-617 67-498 (498)
16 PRK15387 E3 ubiquitin-protein 99.9 2.1E-21 4.6E-26 217.6 14.9 264 249-627 201-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1E-19 2.2E-24 205.7 19.3 290 38-361 59-401 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 8.8E-20 1.9E-24 206.2 12.0 118 250-385 179-296 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 8.5E-20 1.8E-24 192.1 1.4 279 301-643 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 3E-19 6.4E-24 187.9 4.6 261 244-504 18-319 (319)
21 KOG0617 Ras suppressor protein 99.6 5.3E-18 1.1E-22 148.8 -4.0 184 101-336 28-211 (264)
22 PLN03150 hypothetical protein; 99.6 4.8E-16 1E-20 175.6 10.0 116 561-676 419-538 (623)
23 PLN03150 hypothetical protein; 99.6 2E-15 4.3E-20 170.6 14.5 152 39-193 369-528 (623)
24 KOG0617 Ras suppressor protein 99.6 1.2E-17 2.6E-22 146.5 -3.1 165 80-272 31-195 (264)
25 COG4886 Leucine-rich repeat (L 99.2 3.3E-11 7.1E-16 130.5 7.4 178 420-648 116-294 (394)
26 KOG0532 Leucine-rich repeat (L 99.2 2.6E-12 5.6E-17 133.5 -2.2 195 272-479 74-271 (722)
27 KOG0532 Leucine-rich repeat (L 99.1 2.5E-12 5.4E-17 133.6 -2.6 194 249-455 75-271 (722)
28 COG4886 Leucine-rich repeat (L 99.1 1.7E-10 3.8E-15 124.9 10.6 139 243-390 157-295 (394)
29 KOG1259 Nischarin, modulator o 99.1 1.4E-11 2.9E-16 118.3 0.1 206 389-648 207-416 (490)
30 KOG3207 Beta-tubulin folding c 99.0 3.8E-11 8.2E-16 121.4 0.7 185 416-646 142-341 (505)
31 KOG3207 Beta-tubulin folding c 99.0 4.4E-11 9.6E-16 120.9 1.0 215 126-362 117-340 (505)
32 KOG1909 Ran GTPase-activating 99.0 5.7E-11 1.2E-15 117.0 1.1 192 293-504 88-310 (382)
33 KOG1259 Nischarin, modulator o 99.0 1.3E-10 2.8E-15 111.7 2.4 104 273-385 284-387 (490)
34 KOG1909 Ran GTPase-activating 99.0 8E-11 1.7E-15 116.0 -0.1 61 325-385 214-283 (382)
35 KOG0531 Protein phosphatase 1, 98.9 1.5E-10 3.2E-15 125.6 -0.5 243 325-648 73-322 (414)
36 KOG4658 Apoptotic ATPase [Sign 98.9 4.3E-09 9.3E-14 121.9 8.3 105 107-214 546-652 (889)
37 PF13855 LRR_8: Leucine rich r 98.8 3.2E-09 6.9E-14 80.8 4.0 60 584-643 1-61 (61)
38 PF14580 LRR_9: Leucine-rich r 98.8 2.5E-09 5.4E-14 99.2 3.9 126 345-499 16-147 (175)
39 PF14580 LRR_9: Leucine-rich r 98.8 5.5E-09 1.2E-13 96.9 5.1 123 325-475 20-147 (175)
40 KOG0531 Protein phosphatase 1, 98.7 1.5E-09 3.3E-14 117.7 -1.4 241 249-506 72-319 (414)
41 PF13855 LRR_8: Leucine rich r 98.7 2.5E-08 5.3E-13 75.9 4.2 59 421-479 2-60 (61)
42 KOG4658 Apoptotic ATPase [Sign 98.6 6.3E-08 1.4E-12 112.4 7.2 103 205-308 546-653 (889)
43 PF08263 LRRNT_2: Leucine rich 98.5 1.8E-07 3.9E-12 65.0 4.5 38 41-78 2-43 (43)
44 KOG2120 SCF ubiquitin ligase, 98.5 3.1E-09 6.7E-14 102.4 -6.7 66 151-218 207-274 (419)
45 KOG1859 Leucine-rich repeat pr 98.4 5.8E-09 1.2E-13 111.8 -6.1 179 413-644 102-292 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.3 1.1E-08 2.4E-13 98.6 -7.4 204 83-307 160-373 (419)
47 KOG1859 Leucine-rich repeat pr 98.3 2.4E-08 5.2E-13 107.2 -6.3 127 444-620 164-292 (1096)
48 KOG4579 Leucine-rich repeat (L 98.2 1E-07 2.2E-12 81.6 -3.6 64 559-624 76-139 (177)
49 COG5238 RNA1 Ran GTPase-activa 98.1 1.1E-06 2.4E-11 84.0 1.4 69 271-339 212-287 (388)
50 COG5238 RNA1 Ran GTPase-activa 98.1 5.1E-07 1.1E-11 86.2 -0.9 62 325-386 215-286 (388)
51 KOG2982 Uncharacterized conser 98.1 8.3E-07 1.8E-11 85.9 0.2 40 180-219 71-112 (418)
52 KOG2982 Uncharacterized conser 98.0 2.5E-06 5.4E-11 82.7 1.7 83 418-500 197-287 (418)
53 PF12799 LRR_4: Leucine Rich r 97.9 5.5E-06 1.2E-10 57.6 2.2 35 585-620 2-37 (44)
54 KOG4579 Leucine-rich repeat (L 97.9 7.6E-07 1.7E-11 76.3 -3.0 59 325-385 54-113 (177)
55 PF12799 LRR_4: Leucine Rich r 97.8 1E-05 2.2E-10 56.3 2.0 39 607-646 1-39 (44)
56 PRK15386 type III secretion pr 97.6 0.00021 4.5E-09 74.9 7.9 76 416-504 48-124 (426)
57 KOG3665 ZYG-1-like serine/thre 97.5 4.7E-05 1E-09 86.5 2.8 138 154-314 122-267 (699)
58 PRK15386 type III secretion pr 97.3 0.00069 1.5E-08 71.1 8.6 136 102-259 48-187 (426)
59 KOG3665 ZYG-1-like serine/thre 97.2 0.00014 3.1E-09 82.7 2.5 132 83-217 123-263 (699)
60 KOG1644 U2-associated snRNP A' 97.2 0.00065 1.4E-08 62.9 5.8 38 416-453 109-149 (233)
61 PF13306 LRR_5: Leucine rich r 97.1 0.0022 4.8E-08 57.0 7.9 105 343-452 7-111 (129)
62 KOG1644 U2-associated snRNP A' 97.0 0.001 2.2E-08 61.6 5.4 104 107-213 43-149 (233)
63 PF13306 LRR_5: Leucine rich r 96.9 0.0024 5.3E-08 56.7 7.1 106 367-477 7-112 (129)
64 KOG4341 F-box protein containi 96.6 0.00015 3.2E-09 74.1 -3.8 63 370-432 370-438 (483)
65 KOG2739 Leucine-rich acidic nu 96.6 0.0012 2.6E-08 63.8 2.4 39 126-164 61-101 (260)
66 KOG4341 F-box protein containi 96.4 0.00023 5.1E-09 72.7 -3.9 86 106-191 138-227 (483)
67 KOG2739 Leucine-rich acidic nu 96.2 0.0016 3.4E-08 63.0 0.6 39 272-310 64-104 (260)
68 KOG2123 Uncharacterized conser 95.9 0.00058 1.3E-08 66.1 -3.8 98 397-498 20-123 (388)
69 PF00560 LRR_1: Leucine Rich R 95.8 0.0031 6.7E-08 36.4 0.5 19 609-628 2-20 (22)
70 KOG2123 Uncharacterized conser 95.5 0.00083 1.8E-08 65.1 -4.2 90 418-511 17-107 (388)
71 PF00560 LRR_1: Leucine Rich R 95.0 0.01 2.2E-07 34.2 0.8 20 562-582 2-21 (22)
72 KOG1947 Leucine rich repeat pr 94.5 0.0083 1.8E-07 66.8 -0.6 111 248-360 187-307 (482)
73 KOG1947 Leucine rich repeat pr 94.0 0.0068 1.5E-07 67.5 -2.8 186 104-299 186-389 (482)
74 KOG4308 LRR-containing protein 93.3 0.00085 1.8E-08 73.1 -11.1 62 200-261 111-184 (478)
75 KOG4308 LRR-containing protein 93.1 0.0017 3.7E-08 70.8 -9.1 41 603-644 400-445 (478)
76 KOG0473 Leucine-rich repeat pr 91.3 0.014 3.1E-07 55.3 -4.0 84 558-644 40-124 (326)
77 PF13504 LRR_7: Leucine rich r 90.9 0.12 2.5E-06 27.6 0.9 11 609-619 3-13 (17)
78 KOG3864 Uncharacterized conser 90.3 0.02 4.4E-07 53.3 -4.0 82 132-213 103-185 (221)
79 KOG0473 Leucine-rich repeat pr 89.9 0.0076 1.6E-07 57.1 -7.1 82 81-165 41-122 (326)
80 smart00369 LRR_TYP Leucine-ric 88.4 0.33 7.1E-06 29.1 1.7 16 607-622 2-17 (26)
81 smart00370 LRR Leucine-rich re 88.4 0.33 7.1E-06 29.1 1.7 16 607-622 2-17 (26)
82 smart00370 LRR Leucine-rich re 86.4 0.64 1.4E-05 27.8 2.1 18 130-147 2-19 (26)
83 smart00369 LRR_TYP Leucine-ric 86.4 0.64 1.4E-05 27.8 2.1 18 130-147 2-19 (26)
84 PF13516 LRR_6: Leucine Rich r 83.2 0.55 1.2E-05 27.5 0.8 15 444-458 2-16 (24)
85 KOG3864 Uncharacterized conser 82.5 0.33 7.3E-06 45.5 -0.5 82 397-478 102-186 (221)
86 smart00365 LRR_SD22 Leucine-ri 73.8 2.7 5.9E-05 25.3 1.8 15 606-620 1-15 (26)
87 smart00364 LRR_BAC Leucine-ric 68.1 3.7 8E-05 24.6 1.4 13 608-620 3-15 (26)
88 smart00368 LRR_RI Leucine rich 65.4 5 0.00011 24.6 1.7 14 607-620 2-15 (28)
89 KOG4242 Predicted myosin-I-bin 63.3 26 0.00057 37.6 7.5 21 130-150 165-185 (553)
90 KOG3763 mRNA export factor TAP 44.6 13 0.00029 40.5 1.9 13 227-239 272-284 (585)
91 KOG4242 Predicted myosin-I-bin 44.0 80 0.0017 34.1 7.3 86 420-505 354-453 (553)
92 KOG3763 mRNA export factor TAP 42.7 13 0.00027 40.7 1.4 37 444-482 244-284 (585)
93 PTZ00382 Variant-specific surf 40.4 22 0.00048 29.4 2.2 16 707-722 78-93 (96)
94 smart00367 LRR_CC Leucine-rich 39.1 27 0.00058 20.7 1.9 12 154-165 2-13 (26)
95 PF02439 Adeno_E3_CR2: Adenovi 38.9 11 0.00024 24.8 0.2 17 702-718 8-24 (38)
96 PF01102 Glycophorin_A: Glycop 36.9 11 0.00024 32.7 -0.1 6 714-719 83-88 (122)
97 TIGR00864 PCC polycystin catio 34.7 21 0.00046 46.8 1.8 31 590-620 1-32 (2740)
98 PF05393 Hum_adeno_E3A: Human 30.7 22 0.00047 28.3 0.6 15 709-723 45-59 (94)
99 PF04478 Mid2: Mid2 like cell 28.5 36 0.00077 30.6 1.7 14 700-713 52-65 (154)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-76 Score=711.61 Aligned_cols=578 Identities=37% Similarity=0.571 Sum_probs=543.1
Q ss_pred CHHhHHHHHHHHhcCCCCCCCCCCC-CCCCCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCC
Q 004747 40 NLEDKASLLLFKSLVQDPTQKLSSW-VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAF 118 (732)
Q Consensus 40 ~~~~~~~l~~~k~~~~~~~~~l~~w-~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l 118 (732)
.++|++||++||+.+.+|.+.+.+| .+++||.|.||+|+. .++|+.|+|++++++|.++..+..+++|++|+|++|++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 3478889999999998887788999 578999999999984 67999999999999999999999999999999999999
Q ss_pred CCccccccc-CCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccC
Q 004747 119 TGRISTCFG-GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP 197 (732)
Q Consensus 119 ~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p 197 (732)
.+.+|..+. .+++|++|+|++|.+++.+|. +.+++|++|+|++| .+.+.+|..++++ ++|++|++++|.+.+.+|
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n-~~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p 181 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN-MLSGEIPNDIGSF-SSLKVLDLGGNVLVGKIP 181 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCC-cccccCChHHhcC-CCCCEEECccCcccccCC
Confidence 988887755 999999999999999998885 56899999999999 6778899999999 999999999999999999
Q ss_pred cccCCCCCCCEEEeecccCCCcccccc---ccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCC
Q 004747 198 ESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQA 274 (732)
Q Consensus 198 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~ 274 (732)
..+.++++|++|++++|.+.+..|..+ .+|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..++++++
T Consensus 182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 261 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261 (968)
T ss_pred hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC
Confidence 999999999999999999999888754 45999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEe
Q 004747 275 LTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALF 354 (732)
Q Consensus 275 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 354 (732)
|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+. +|+.|++++|.+++.+|..+..+++|+.|+
T Consensus 262 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~---~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 338 (968)
T PLN00113 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ---NLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338 (968)
T ss_pred CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC---CCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence 99999999999999999999999999999999999999999888777 899999999999999999999999999999
Q ss_pred ccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceee
Q 004747 355 LSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG 434 (732)
Q Consensus 355 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 434 (732)
+++|.+.+.+|..++.+++|+.|++++|.+++.+|..+..+.+|+.|++++|++.+.+|..+..+++|+.|++++|++++
T Consensus 339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCccccc
Q 004747 435 EIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFN 514 (732)
Q Consensus 435 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~ 514 (732)
.+|..+..+++|+.|++++|.+++.++..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+ .
T Consensus 419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~-~ 496 (968)
T PLN00113 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKL-G 496 (968)
T ss_pred ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhh-h
Confidence 999999999999999999999999999999999999999999999999888765 45899999999999998877643 1
Q ss_pred CccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccc
Q 004747 515 FSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFN 594 (732)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 594 (732)
.++.|+.|++++|+++|.+|..+.++++|++|+|++|
T Consensus 497 -------------------------------------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 533 (968)
T PLN00113 497 -------------------------------------------SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533 (968)
T ss_pred -------------------------------------------hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC
Confidence 2678899999999999999999999999999999999
Q ss_pred cceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCCCCCCCcCc-cccCCCCCCCCC
Q 004747 595 FLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLES 670 (732)
Q Consensus 595 ~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~-~~~gn~~lcg~~ 670 (732)
.++|.+|. +..+++|+.|||++|+++|.+|..+..+++|++||+++|+++|.+|..+++.++.. +|.||+.+||.+
T Consensus 534 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999998 99999999999999999999999999999999999999999999999999999988 899999999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-61 Score=581.92 Aligned_cols=510 Identities=36% Similarity=0.510 Sum_probs=475.0
Q ss_pred CCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCcccc-CCCCCCEEeCCCCCCCCCcCCchhhhcccCCcE
Q 004747 106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIM-KLRNLRELILKGNPELGGVFPGWVGNFSMNLEK 184 (732)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~ 184 (732)
.+++.|+|++|.+++.++..|..+++|++|+|++|++++.+|..+. .+++|++|+|++| .+.+.+|. +.+ ++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l-~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSI-PNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc--ccc-CCCCE
Confidence 4789999999999999999999999999999999999998888765 9999999999999 56677775 345 89999
Q ss_pred EEeeCcccccccCcccCCCCCCCEEEeecccCCCcccccc---ccccEEECCCCcCccccCchhhcccccCeeeCCCCcc
Q 004747 185 LDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261 (732)
Q Consensus 185 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l 261 (732)
|++++|.+++.+|..++++++|++|++++|.+.+..|..+ .+|++|++++|.+++.+|..++++++|++|++++|.+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 9999999999999999999999999999999998888754 5599999999999999999999999999999999999
Q ss_pred ccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCc
Q 004747 262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP 341 (732)
Q Consensus 262 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p 341 (732)
.+.+|..++++++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+. +|+.|++++|.+.+.+|
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~---~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ---KLISLDLSDNSLSGEIP 301 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc---CcCEEECcCCeeccCCC
Confidence 999999999999999999999999999999999999999999999999999999988877 89999999999999999
Q ss_pred ccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCC
Q 004747 342 LKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDS 421 (732)
Q Consensus 342 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 421 (732)
..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccC
Q 004747 422 LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST 501 (732)
Q Consensus 422 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~ 501 (732)
|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccc
Q 004747 502 NKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF 581 (732)
Q Consensus 502 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 581 (732)
|++.+.+|... ...+|+.||+++|+++|.+|..+.
T Consensus 462 n~~~~~~p~~~---------------------------------------------~~~~L~~L~ls~n~l~~~~~~~~~ 496 (968)
T PLN00113 462 NKFFGGLPDSF---------------------------------------------GSKRLENLDLSRNQFSGAVPRKLG 496 (968)
T ss_pred ceeeeecCccc---------------------------------------------ccccceEEECcCCccCCccChhhh
Confidence 99998777642 145788999999999999999999
Q ss_pred cccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCCCC-CCCcCc-
Q 004747 582 QLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQG-YQKFPG- 658 (732)
Q Consensus 582 ~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~-~~~~~~- 658 (732)
++++|+.|+|++|++++.+|. +.++++|++|+|++|.++|.+|..+..+++|+.||+++|+++|.+|.... +..+..
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 999999999999999999998 99999999999999999999999999999999999999999999997533 223333
Q ss_pred cccCCCCCC
Q 004747 659 AFAGNPNLC 667 (732)
Q Consensus 659 ~~~gn~~lc 667 (732)
.+.+|+..+
T Consensus 577 ~ls~N~l~~ 585 (968)
T PLN00113 577 NISHNHLHG 585 (968)
T ss_pred eccCCccee
Confidence 677787654
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-43 Score=347.15 Aligned_cols=472 Identities=29% Similarity=0.406 Sum_probs=322.3
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCC
Q 004747 85 VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164 (732)
Q Consensus 85 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 164 (732)
..+.++.|.+. .+.+.+.++..|.+|++++|++. ..|++++.+..++.|+.++|+++ .+|..++.+.+|+.++.++|
T Consensus 48 ~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 48 QKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccc
Confidence 34445555544 23344555555555555555554 34445555555555555555555 45555555555555555555
Q ss_pred CCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCch
Q 004747 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCF 244 (732)
Q Consensus 165 ~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 244 (732)
.. ..+|+.++.+ ..|+.++..+|+++ ..|+.+.++.+|..+++.+ |.+. ..|+.
T Consensus 125 ~~--~el~~~i~~~-~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~---------------------n~l~-~l~~~ 178 (565)
T KOG0472|consen 125 EL--KELPDSIGRL-LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEG---------------------NKLK-ALPEN 178 (565)
T ss_pred ce--eecCchHHHH-hhhhhhhccccccc-cCchHHHHHHHHHHhhccc---------------------cchh-hCCHH
Confidence 32 2344444444 44555555555544 3444444444444444444 4444 33444
Q ss_pred hhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCC
Q 004747 245 AASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKA 324 (732)
Q Consensus 245 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~ 324 (732)
.-+++.|++||.-.|-+. .+|..++.+.+|.-|++..|++. ..| +|.++..|+++.++.|.+. .+|.... ..+.
T Consensus 179 ~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~--~~L~ 252 (565)
T KOG0472|consen 179 HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHL--KHLN 252 (565)
T ss_pred HHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHh--cccc
Confidence 444788888888888776 67888888888888888888887 444 7888888888888888887 5666544 2333
Q ss_pred CccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcC---ccee
Q 004747 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ---LLAL 401 (732)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~---L~~L 401 (732)
++.+||+..|+++ ..|+.+..+.+|.+||+++|.++ .+|..++++ +|+.|-+.+|.+. .+-..+..+.. |++|
T Consensus 253 ~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 253 SLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYL 328 (565)
T ss_pred cceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHH
Confidence 7888888888888 78888888888888888888888 566778888 8888888888775 22222222211 1221
Q ss_pred ec--cccccc----c---------cCcccccCCCCCcEEEcccCceeeeccccCCCCCC---CCEEEccCCcccccchhh
Q 004747 402 IV--NNNNLS----G---------EIQPELDALDSLKILDISNNQISGEIPLTLAGLKS---LEIVDFSSNNLSGSLNDA 463 (732)
Q Consensus 402 ~l--~~n~l~----~---------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~~~~~~ 463 (732)
.= ..-.++ | ........+.+.+.|++++-+++ .+|........ ...++++.|++. .+|..
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~ 406 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKR 406 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhh
Confidence 11 000000 0 01111234567889999999998 56655433333 788999999998 67877
Q ss_pred hhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEe
Q 004747 464 ITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRI 543 (732)
Q Consensus 464 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (732)
+..+..+.+.-+..|+..+.+|..++.+++|..|++++|.+. .+|.+.+.
T Consensus 407 L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~----------------------------- 456 (565)
T KOG0472|consen 407 LVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS----------------------------- 456 (565)
T ss_pred hHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhh-----------------------------
Confidence 777766655444444444588999999999999999999875 46655422
Q ss_pred EEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCccc
Q 004747 544 SVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQ 622 (732)
Q Consensus 544 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ 622 (732)
+..|+.||+|.|+|. .+|..+..+..++.+-.++|++....|+ +.+|.+|.+|||.+|.+. .
T Consensus 457 ---------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~ 519 (565)
T KOG0472|consen 457 ---------------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-Q 519 (565)
T ss_pred ---------------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-h
Confidence 566899999999998 8999999999999998899999877777 999999999999999999 8
Q ss_pred CCcCCCCCCCCCEEEcccCcce
Q 004747 623 IPGNISSLQELTLLNLSYNSFS 644 (732)
Q Consensus 623 ip~~l~~l~~L~~L~ls~N~l~ 644 (732)
||..+++|++|++|++++|+|.
T Consensus 520 IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 520 IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CChhhccccceeEEEecCCccC
Confidence 8889999999999999999999
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-38 Score=320.04 Aligned_cols=364 Identities=24% Similarity=0.223 Sum_probs=249.4
Q ss_pred CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747 107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186 (732)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~ 186 (732)
.-+.||+++|++...-+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+| .++..-...+..+ +.|++||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l-~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHN-LISSVTSEELSAL-PALRSLD 155 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecc-ccccccHHHHHhH-hhhhhhh
Confidence 4466888888888777778888888888888888887 66766666667888888888 5555555556666 6778888
Q ss_pred eeCcccccccCcccCCCCCCCEEEeecccCCCccccccc---cccEEECCCCcCccccCchhhcccccCeeeCCCCcccc
Q 004747 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG 263 (732)
Q Consensus 187 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~ 263 (732)
||.|.++..--.+|..-.++++|+|++|.|+..-...|. +|.+|.|+.|+++...+..|.++++|+.|+|..|++.-
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 888877754445566667778888888877765554443 46777777777775555666667777777777777663
Q ss_pred ccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCccc
Q 004747 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343 (732)
Q Consensus 264 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 343 (732)
.---.|.++++|+.|.+..|.+.......|..+.++++|+|+.|+++..-..++.+++ .|+.|++|+|.+...-++.
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt---~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT---SLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc---hhhhhccchhhhheeecch
Confidence 3344566777777777777777655556667777777777777777655555555555 6777777777776666666
Q ss_pred ccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcc---cccCCC
Q 004747 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP---ELDALD 420 (732)
Q Consensus 344 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~ 420 (732)
+..+++|++|+|++|+++...+..|..+..|++|+|++|++.-.-...|.++.+|++|++++|.+++.+.+ .|.+++
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~ 392 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP 392 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence 66677777777777777766666666677777777777776654455566666777777777766655433 355666
Q ss_pred CCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEccc
Q 004747 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477 (732)
Q Consensus 421 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 477 (732)
+|+.|++.+|++......+|.++..|+.|||.+|.|..+.|.+|..+ .|+.|.+..
T Consensus 393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 393 SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 77777777777764444566667777777777777666666666666 666665544
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-40 Score=324.81 Aligned_cols=451 Identities=28% Similarity=0.376 Sum_probs=358.1
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCC
Q 004747 83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK 162 (732)
Q Consensus 83 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 162 (732)
-++.+++..+.+. ++|++++.+..++.++.++|++. .+|..++.+.+|+.|+.++|.+. ..|+.++.+..|..++..
T Consensus 69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence 4678889999887 77899999999999999999998 78889999999999999999999 678889999999999999
Q ss_pred CCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccC
Q 004747 163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLP 242 (732)
Q Consensus 163 ~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~ 242 (732)
+|+. ...|..++.+ .+|..+++.+|.+.. .|+..-+++.|++||...|-+. .+|
T Consensus 146 ~N~i--~slp~~~~~~-~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~----------------------tlP 199 (565)
T KOG0472|consen 146 NNQI--SSLPEDMVNL-SKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE----------------------TLP 199 (565)
T ss_pred cccc--ccCchHHHHH-HHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh----------------------cCC
Confidence 9955 5678888888 899999999999995 4545555999999999888765 788
Q ss_pred chhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccc-cccCcCCcEEEccCCCCCCCCchhhhhcC
Q 004747 243 CFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPR-LVFFEKLLLLDLSFNDLSGPLPSKIAQTT 321 (732)
Q Consensus 243 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 321 (732)
..++.+.+|..|++..|++. ..| .|.++..|++|.++.|++. .+|.+ ..++.++.+||+.+|+++ ..|+.+.-+.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr 275 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR 275 (565)
T ss_pred hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence 88999999999999999998 566 7999999999999999998 45554 458999999999999999 7899988887
Q ss_pred CCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCC---CCCEE-------EccCCc----Cccc
Q 004747 322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT---YLQVI-------DLSHNM----LSGS 387 (732)
Q Consensus 322 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~---~L~~L-------~Ls~n~----l~~~ 387 (732)
+|++||+|+|.++ .+|..++++ .|+.|.+.+|.+. .+-..+-+.. -|++| .++... -.+.
T Consensus 276 ---sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 276 ---SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred ---hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 8999999999999 688899999 9999999999875 2221111110 01111 111110 0001
Q ss_pred -cCc---cccCCcCcceeecccccccccCcccccCCC--CCcEEEcccCceeeeccccCCCCCCCCE-EEccCCcccccc
Q 004747 388 -IPL---NIVGCFQLLALIVNNNNLSGEIQPELDALD--SLKILDISNNQISGEIPLTLAGLKSLEI-VDFSSNNLSGSL 460 (732)
Q Consensus 388 -~p~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~ 460 (732)
.+. ......+.+.|++++-+++....+.|.... -....+++.|++. ++|..+..++.+.+ +++++|.++ .+
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv 427 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FV 427 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cc
Confidence 111 122345678888888888876665554332 3789999999998 78887777666554 455655554 78
Q ss_pred hhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCcee
Q 004747 461 NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMV 540 (732)
Q Consensus 461 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (732)
|..+..+++|..|++++|.+. .+|..++.+..|+.+|++.|+|. .+|.+++
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y--------------------------- 478 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLY--------------------------- 478 (565)
T ss_pred hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHh---------------------------
Confidence 888999999999999999887 88999999999999999999885 4555432
Q ss_pred EEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCc
Q 004747 541 IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT 620 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~ 620 (732)
.+..++.+-.++|++...-|..+.++.+|+.|||.+|.+...+|.++++++|++|+|++|.+.
T Consensus 479 -----------------~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 479 -----------------ELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -----------------hHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 144455666677899744444599999999999999999854445999999999999999998
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3e-37 Score=315.55 Aligned_cols=367 Identities=25% Similarity=0.237 Sum_probs=280.6
Q ss_pred CCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEE
Q 004747 131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLD 210 (732)
Q Consensus 131 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 210 (732)
.-+.||+|+|.++...+..|.++++|+.+++..|.. ..+|...+.. .+|+.|+|.+|.|+..-.+.+..++.|+.||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~s-ghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHES-GHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchh--hhcccccccc-cceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 345688888888877777888888888888888833 4566655554 6788888888888777677788888888888
Q ss_pred eecccCCCcccccccc---ccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCC
Q 004747 211 LEKNNLTGNVHDFYQS---LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY 287 (732)
Q Consensus 211 Ls~n~l~~~~~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 287 (732)
||.|.|+......|+. +++|+|++|.++..-...|.++.+|.+|.|+.|.++...+..|.++++|+.|+|..|++.-
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 8888887766666654 8888888888887777778888888888888888886666677778888888888888764
Q ss_pred cCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccc
Q 004747 288 EISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPAR 367 (732)
Q Consensus 288 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 367 (732)
.---.|.++++|+.|.|..|++...-...|..+. ++++|+|+.|+++..-..++.+++.|+.|++++|.|...-++.
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~---kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLE---KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeec---ccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence 4345677788888888888887744444455555 7888888888887666667778888888888888887777777
Q ss_pred cCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccc---cCCCCC
Q 004747 368 IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPL---TLAGLK 444 (732)
Q Consensus 368 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~---~~~~l~ 444 (732)
+..+++|++|+|++|+++...+.+|..+..|++|.+++|++...-...|..+++|++|||++|.++..+.+ .|.+++
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~ 392 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP 392 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence 77788888888888888877777788888888888888888777666777888888888888888765543 467788
Q ss_pred CCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcC
Q 004747 445 SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504 (732)
Q Consensus 445 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l 504 (732)
+|+.|++.+|++..+...+|..+++|++|||.+|.+...-|.+|..+ .|+.|-+..-.|
T Consensus 393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 393 SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred hhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 88888888888886666778888888888888888877777777777 777777665444
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-37 Score=332.78 Aligned_cols=396 Identities=26% Similarity=0.286 Sum_probs=222.0
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCC
Q 004747 84 VVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163 (732)
Q Consensus 84 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 163 (732)
++.|+++.|.+-...-+...+.-+|+.||+++|++. ..|..+..+.+|+.|+++.|.|. ..|.+.+++.+|++++|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence 556666666544222223334445778888877775 56666777778888888888777 5667777788888888887
Q ss_pred CCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCc
Q 004747 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPC 243 (732)
Q Consensus 164 n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~ 243 (732)
|.. ...|..+..+ .+|++|++++|.+. .+|..+..++.++.+..++|......+... ++.+++..|.+.+.++.
T Consensus 101 n~l--~~lP~~~~~l-knl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~--ik~~~l~~n~l~~~~~~ 174 (1081)
T KOG0618|consen 101 NRL--QSLPASISEL-KNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTS--IKKLDLRLNVLGGSFLI 174 (1081)
T ss_pred chh--hcCchhHHhh-hcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcccc--chhhhhhhhhcccchhc
Confidence 733 4567777777 77888888888776 677777777777777777772221111111 56666666666666666
Q ss_pred hhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCC
Q 004747 244 FAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEK 323 (732)
Q Consensus 244 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~ 323 (732)
.+..+++ .|+|.+|.+. -..+..+.+|+.|....|++... -..-++|+.|+.++|.++...+. ...
T Consensus 175 ~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~-----p~p 240 (1081)
T KOG0618|consen 175 DIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH-----PVP 240 (1081)
T ss_pred chhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc-----ccc
Confidence 6665555 5677777665 12345566666666666665421 12235666666666666522111 111
Q ss_pred CCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeec
Q 004747 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV 403 (732)
Q Consensus 324 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 403 (732)
.+|+++++++|+++ .+|.|++.+.+|+.++..+|+++ .+|..+...++|+.|++..|.+. .+|....+...|++|++
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 25666666666666 45566666666666666666664 55555666666666666666665 44444444555555555
Q ss_pred ccccccccCcccccCCCC-CcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCcc
Q 004747 404 NNNNLSGEIQPELDALDS-LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482 (732)
Q Consensus 404 ~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 482 (732)
..|++....+..+..... |+.|+.+.|++.......=...+.|+.|.+.+|.+++..-..+.++.+|+.|+|++|++..
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 555554433322222222 4444444444442111111123344445555555544443344444444444444444441
Q ss_pred ccchhhhcCCCCCEEEccCCcC
Q 004747 483 NLPNWLFSFQAIQMMDFSTNKF 504 (732)
Q Consensus 483 ~~p~~~~~~~~L~~L~ls~N~l 504 (732)
.....+.+++.|++|++|+|++
T Consensus 398 fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchh
Confidence 1122233444444444444444
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=7.3e-35 Score=313.81 Aligned_cols=395 Identities=28% Similarity=0.322 Sum_probs=326.5
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCC
Q 004747 83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK 162 (732)
Q Consensus 83 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 162 (732)
++.+||++++.+. ..|..+..+.+|+.|+++.|.+. ..|....++.+|++|.|.+|.+. ..|..+..+++|++|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 4889999988765 77888999999999999999997 67788999999999999999988 789999999999999999
Q ss_pred CCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccE-EECCCCcCcccc
Q 004747 163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLV-LNLGSNRFSGTL 241 (732)
Q Consensus 163 ~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~-L~L~~n~l~~~~ 241 (732)
+|.+ +.+|.-+..+ +.++.+..++|... ..++... .+++++..|.+.+.++.....+++ |+|.+|.+.
T Consensus 123 ~N~f--~~~Pl~i~~l-t~~~~~~~s~N~~~----~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~--- 191 (1081)
T KOG0618|consen 123 FNHF--GPIPLVIEVL-TAEEELAASNNEKI----QRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME--- 191 (1081)
T ss_pred hhcc--CCCchhHHhh-hHHHHHhhhcchhh----hhhcccc-chhhhhhhhhcccchhcchhhhheeeecccchhh---
Confidence 9954 6788888777 88899999999322 1233333 889999999999988888877777 999999886
Q ss_pred CchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcC
Q 004747 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT 321 (732)
Q Consensus 242 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 321 (732)
-..+.++.+|+.|....|++.... -.-++|+.|+.++|.++...+ -....+|+++++++|+++ .+|+++..+.
T Consensus 192 ~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~ 264 (1081)
T KOG0618|consen 192 VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACA 264 (1081)
T ss_pred hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcc
Confidence 334677888999999999886432 235789999999998873322 223568999999999999 5779999888
Q ss_pred CCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCC-c-Ccc
Q 004747 322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGC-F-QLL 399 (732)
Q Consensus 322 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~-~L~ 399 (732)
+|+.++..+|.++ .+|..+....+|+.|.+.+|.+. .+|.....+++|+.|+|..|++. ..|+.+... . .+.
T Consensus 265 ---nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~ 338 (1081)
T KOG0618|consen 265 ---NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLN 338 (1081)
T ss_pred ---cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHH
Confidence 8999999999997 78988999999999999999998 67777888999999999999997 556544332 2 367
Q ss_pred eeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCC
Q 004747 400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479 (732)
Q Consensus 400 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 479 (732)
.+..+.|++.......-..++.|+.|.+.+|.+++..-..+.+.++|++|+|++|++.......+.++..|+.|+|++|+
T Consensus 339 ~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 339 TLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK 418 (1081)
T ss_pred HHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch
Confidence 77777787765543333456789999999999998877788999999999999999986666677899999999999999
Q ss_pred CccccchhhhcCCCCCEEEccCCcCc
Q 004747 480 LSGNLPNWLFSFQAIQMMDFSTNKFM 505 (732)
Q Consensus 480 l~~~~p~~~~~~~~L~~L~ls~N~l~ 505 (732)
++ .+|..+..+..|++|...+|++.
T Consensus 419 L~-~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 419 LT-TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred hh-hhhHHHHhhhhhHHHhhcCCcee
Confidence 98 78898888888888888888775
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.3e-34 Score=296.06 Aligned_cols=366 Identities=25% Similarity=0.353 Sum_probs=261.3
Q ss_pred CcEEEEEcCCCCCcc-cccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747 82 GHVVSINLTDTSLSG-QVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (732)
Q Consensus 82 ~~v~~L~L~~~~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (732)
.-|+.+|+++|.++| ..|.+...+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..++.++.||.++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 357888999999985 67888888999999999888876 68888999999999999999887 3445678888999999
Q ss_pred CCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccc
Q 004747 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGT 240 (732)
Q Consensus 161 Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~ 240 (732)
+.+|+.-...+|..+..+ ..|..||||+|++. +.|..+..-+++-.|+||+|+|..++...
T Consensus 85 ~R~N~LKnsGiP~diF~l-~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~l----------------- 145 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRL-KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSL----------------- 145 (1255)
T ss_pred hhccccccCCCCchhccc-ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchH-----------------
Confidence 998877777788888888 78888888888887 77888888888888888887776433332
Q ss_pred cCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCC-CCCchhhhh
Q 004747 241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLS-GPLPSKIAQ 319 (732)
Q Consensus 241 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~ 319 (732)
+.+++.|-.||||+|++. ..|..+..+..|++|+|++|.+.-..-..+-.+++|++|.+++.+-+ ..+|.++..
T Consensus 146 ----finLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 146 ----FINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD 220 (1255)
T ss_pred ----HHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence 345555556666666655 34555556666666666666554333333444555666666655422 245555555
Q ss_pred cCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcc
Q 004747 320 TTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL 399 (732)
Q Consensus 320 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 399 (732)
+. +|..+|+|.|.+. .+|+.+..+++|+.|+||+|+++ ++....+...+|+.|++|.|+++ .+|.+++.+++|+
T Consensus 221 l~---NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 221 LH---NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred hh---hhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence 55 6666777777766 56666667777777777777766 34444455566777777777776 6677777777777
Q ss_pred eeecccccccc-cCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccC
Q 004747 400 ALIVNNNNLSG-EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478 (732)
Q Consensus 400 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 478 (732)
.|.+.+|+++- -+|..++.+..|+.+..++|.+. .+|..+..|..|+.|.|+.|++. ++|+.+.-++.|+.||+..|
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence 77777776653 25666777778888888888776 77778888888888888888776 67777877888888888887
Q ss_pred CCc
Q 004747 479 KLS 481 (732)
Q Consensus 479 ~l~ 481 (732)
+--
T Consensus 373 pnL 375 (1255)
T KOG0444|consen 373 PNL 375 (1255)
T ss_pred cCc
Confidence 644
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.2e-34 Score=296.18 Aligned_cols=360 Identities=30% Similarity=0.406 Sum_probs=242.5
Q ss_pred cEEECCCCcCc-cccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccC
Q 004747 228 LVLNLGSNRFS-GTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF 306 (732)
Q Consensus 228 ~~L~L~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 306 (732)
+-+|+++|.++ +.+|.....++.++.|.|...++. .+|..++.+.+|++|.+++|++. .+-..+..++.|+.+++..
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRD 87 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhc
Confidence 33455555555 356777777777777777777665 56777777777777777777765 3445566677777777777
Q ss_pred CCCCC-CCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCc
Q 004747 307 NDLSG-PLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385 (732)
Q Consensus 307 n~l~~-~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 385 (732)
|++.. .+|..+..+. .|..||||+|+++ ..|..+..-+++-.|+||+|+|....-..+-+++.|-+||||+|++.
T Consensus 88 N~LKnsGiP~diF~l~---dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLK---DLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred cccccCCCCchhcccc---cceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 76642 3566666665 6777777777776 56777777777777777777776333334556777777777777776
Q ss_pred cccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCcee-eeccccCCCCCCCCEEEccCCcccccchhhh
Q 004747 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS-GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI 464 (732)
Q Consensus 386 ~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 464 (732)
.+|..+..+..|++|.+++|.+...--..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. .+|+.+
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl 241 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL 241 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence 56666777777777777777766554444556667777777766543 346667777777777777777776 667777
Q ss_pred hcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeE
Q 004747 465 TKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRIS 544 (732)
Q Consensus 465 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (732)
.++.+|+.|+|++|+++ .+.-....+.+|++|++|.|+++ .+|..+
T Consensus 242 y~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~av-------------------------------- 287 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAV-------------------------------- 287 (1255)
T ss_pred hhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHH--------------------------------
Confidence 77777777777777776 44445556677777777777775 344432
Q ss_pred EEeecCCchhhhhhcccceEEEccCCcccc-cCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCccc
Q 004747 545 VTAIDTNELSFNYQLFSAVGMDLSDNLLHG-TIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQ 622 (732)
Q Consensus 545 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ 622 (732)
..++.|+.|.+.+|+++- -||..|+.+.+|+++..++|.+. ..|. +..+..|+.|.|++|++. .
T Consensus 288 ------------cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-T 353 (1255)
T KOG0444|consen 288 ------------CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-T 353 (1255)
T ss_pred ------------hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-e
Confidence 125566666677776652 27777777777777777777775 5555 777777777777777776 5
Q ss_pred CCcCCCCCCCCCEEEcccCcc
Q 004747 623 IPGNISSLQELTLLNLSYNSF 643 (732)
Q Consensus 623 ip~~l~~l~~L~~L~ls~N~l 643 (732)
.|+.+.-++.|+.||+..|+=
T Consensus 354 LPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 354 LPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred chhhhhhcCCcceeeccCCcC
Confidence 677777777777777777753
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=6.2e-23 Score=247.90 Aligned_cols=339 Identities=19% Similarity=0.208 Sum_probs=214.5
Q ss_pred ccccCCCCCCEEeCCCCC-----CCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccc
Q 004747 148 DAIMKLRNLRELILKGNP-----ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD 222 (732)
Q Consensus 148 ~~~~~l~~L~~L~Ls~n~-----~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 222 (732)
.+|.++++|+.|.+..+. .....+|..+..++.+|+.|++.++.+. .+|..+ ...+|++|++++|++......
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccccc
Confidence 345555666666554431 1112344444444445666666666554 445544 345666666666655432221
Q ss_pred --ccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCc
Q 004747 223 --FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLL 300 (732)
Q Consensus 223 --~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 300 (732)
.+.+|+.|+|+++.....+|. +..+++|++|++++|.....+|..++++++|+.|++++|..-..+|..+ ++++|+
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 234466666665544344443 5667777777777776656677777777777777777765444555544 577777
Q ss_pred EEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCC-------CccccccCCCCC
Q 004747 301 LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLI-------GEIPARIGNLTY 373 (732)
Q Consensus 301 ~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-------~~~p~~l~~l~~ 373 (732)
.|++++|...+.+|.. . .+|+.|++++|.+. .+|..+ .+++|+.|++.++... ...+......++
T Consensus 708 ~L~Lsgc~~L~~~p~~---~---~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDI---S---TNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred EEeCCCCCCccccccc---c---CCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 7777777554444432 1 26777788777776 566544 4667777777664321 111122233467
Q ss_pred CCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccC
Q 004747 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS 453 (732)
Q Consensus 374 L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 453 (732)
|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|.....+|.. .++|++|++++
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~ 855 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSR 855 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence 8888888887777778888888888888888776555666554 6778888888887655455532 35788888888
Q ss_pred CcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCc
Q 004747 454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503 (732)
Q Consensus 454 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~ 503 (732)
|.++ .+|.++..+++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus 856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 8887 567788888888888888855444577777778888888888775
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1e-22 Score=246.11 Aligned_cols=337 Identities=22% Similarity=0.220 Sum_probs=209.2
Q ss_pred chhhcccccCeeeCCCCc------cccccchhhhccC-CCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCch
Q 004747 243 CFAASAMSLTVLKLDNNS------VVGGIPTCIASLQ-ALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPS 315 (732)
Q Consensus 243 ~~~~~~~~L~~L~Ls~n~------l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 315 (732)
..|..+.+|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|+.|++++|.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 445667777777775543 2233555555553 4777777777665 445554 4577777777777766 4454
Q ss_pred hhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCC
Q 004747 316 KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGC 395 (732)
Q Consensus 316 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 395 (732)
.+..+. +|+.|+++++...+.+|. +..+++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ ++
T Consensus 629 ~~~~l~---~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 629 GVHSLT---GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred ccccCC---CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 444444 777777777654445653 6667777778877776666777777777777888877766555666554 66
Q ss_pred cCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCccc-------ccchhhhhcCC
Q 004747 396 FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS-------GSLNDAITKWT 468 (732)
Q Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~l~ 468 (732)
++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+ .+++|++|++.++... ...+..+...+
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 77777777777655555432 356777778777776 455544 4667777777653321 11122223346
Q ss_pred CCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEee
Q 004747 469 NLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAI 548 (732)
Q Consensus 469 ~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (732)
+|+.|++++|...+.+|..+..+++|+.|++++|...+.+|...
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------ 822 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------ 822 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence 77778888777776777777778888888887776544555432
Q ss_pred cCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCC-cCcccCCcC
Q 004747 549 DTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHN-SLTGQIPGN 626 (732)
Q Consensus 549 ~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N-~l~~~ip~~ 626 (732)
.+++|+.|++++|.....+|.. ..+|++|+|++|.++ .+|. +..+++|++|++++| ++. .+|..
T Consensus 823 ---------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~ 888 (1153)
T PLN03210 823 ---------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLN 888 (1153)
T ss_pred ---------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcc
Confidence 1445566666665444344432 245666666666665 3444 666666666666663 333 35555
Q ss_pred CCCCCCCCEEEcccCc
Q 004747 627 ISSLQELTLLNLSYNS 642 (732)
Q Consensus 627 l~~l~~L~~L~ls~N~ 642 (732)
+..++.|+.++++++.
T Consensus 889 ~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 889 ISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccCCCeeecCCCc
Confidence 5666666666666653
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=6.8e-25 Score=215.99 Aligned_cols=405 Identities=19% Similarity=0.173 Sum_probs=261.7
Q ss_pred ccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEecc-CCCCCcCccccccCcCCcEEE
Q 004747 225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSH-NHLNYEISPRLVFFEKLLLLD 303 (732)
Q Consensus 225 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~ 303 (732)
+.-..++|..|+|+...+..|..+++|+.|||++|+|+.+.|++|.++++|.+|.+.+ |+|+......|+++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3466777778888877778888888888999999988888888888888887777666 888866667788888888888
Q ss_pred ccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcc-cccCCCCCCEEeccCccCCC------------ccccccCC
Q 004747 304 LSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL-KITELKSLQALFLSNNLLIG------------EIPARIGN 370 (732)
Q Consensus 304 Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~------------~~p~~l~~ 370 (732)
+.-|++.....+.+..+. ++..|.+.+|.+. .++. .+..+..++.+.+..|.+.. ..|..++.
T Consensus 147 lNan~i~Cir~~al~dL~---~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLP---SLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred cChhhhcchhHHHHHHhh---hcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 888888876666777776 7888888888887 4444 77778888888888776321 11222222
Q ss_pred CCCCCEEEccCCcCccccCccccCC-cCcceeeccccccccc-CcccccCCCCCcEEEcccCceeeeccccCCCCCCCCE
Q 004747 371 LTYLQVIDLSHNMLSGSIPLNIVGC-FQLLALIVNNNNLSGE-IQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI 448 (732)
Q Consensus 371 l~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 448 (732)
.....-..+.++++...-+..|... ..+..-..+.+...+. ....|..+++|++|+|++|+++++-+.+|.+...+++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 2222333333344332222222221 1111111222222222 2345788999999999999999888888999999999
Q ss_pred EEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCC
Q 004747 449 VDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSM 528 (732)
Q Consensus 449 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~ 528 (732)
|.|..|++...-...|.++..|+.|+|.+|+|+...|..|....+|..|.+-.|++...---.++..+..-.. ..+..
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~--~~~~~ 380 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS--VVGNP 380 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC--CCCCC
Confidence 9999999987667788889999999999999998888889899999999998888754332222221110000 00000
Q ss_pred CC-CcccCCCcee--EEeEEEeecCCch-------hhhhhcccce-EEEccCCcccccCCcccccccCCceeecccccce
Q 004747 529 PA-KSFVLPRSMV--IRISVTAIDTNEL-------SFNYQLFSAV-GMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD 597 (732)
Q Consensus 529 ~~-~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~l~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 597 (732)
+. .+........ .........+.+- .....++-+. +...|+..+. .+|..+- ..-.+|++.+|.++
T Consensus 381 ~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~ 457 (498)
T KOG4237|consen 381 RCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT 457 (498)
T ss_pred CCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc
Confidence 00 0000000000 0000000011000 0011233332 2345555555 6666553 36678999999998
Q ss_pred ecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccC
Q 004747 598 GQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 641 (732)
Q Consensus 598 ~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 641 (732)
.+|.- .+..| .+|+|+|+++...-..|++++.|.+|-+|||
T Consensus 458 -~vp~~-~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 458 -SVPDE-LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -ccCHH-HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 66652 45677 8999999998777778999999999999987
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=4.1e-22 Score=223.32 Aligned_cols=262 Identities=25% Similarity=0.282 Sum_probs=156.8
Q ss_pred CCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEE
Q 004747 274 ALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL 353 (732)
Q Consensus 274 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 353 (732)
.-..|+++++.++ .+|+.+. ++|+.|++++|+++ .+|.. .++|++|++++|+++ .+|.. .++|+.|
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l------p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L 267 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL------PPELRTLEVSGNQLT-SLPVL---PPGLLEL 267 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC------CCCCcEEEecCCccC-cccCc---cccccee
Confidence 4567788888777 4666554 36777777777776 34431 126777777777776 34532 3466667
Q ss_pred eccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCcee
Q 004747 354 FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433 (732)
Q Consensus 354 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 433 (732)
++++|.++ .+|.. .++|+.|++++|+++ .+|. ..++|+.|++++|+++
T Consensus 268 ~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---------------------------~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 268 SIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---------------------------LPPGLQELSVSDNQLA 315 (788)
T ss_pred eccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---------------------------cccccceeECCCCccc
Confidence 77776665 33332 244556666666665 2332 1234555555555555
Q ss_pred eeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccc
Q 004747 434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNF 513 (732)
Q Consensus 434 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~ 513 (732)
+ +|.. ..+|+.|++++|.+++ +|.. ..+|++|++++|+++ .+|.. ..+|+.|++++|++++ +|..
T Consensus 316 ~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l-- 380 (788)
T PRK15387 316 S-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL-- 380 (788)
T ss_pred c-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc--
Confidence 3 2321 1245555666666553 3321 135666666666666 23432 2456666666666652 3321
Q ss_pred cCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeeccc
Q 004747 514 NFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSF 593 (732)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~ 593 (732)
...|+.|++++|+|+ .+|.. .++|+.|++++
T Consensus 381 ---------------------------------------------~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~ 411 (788)
T PRK15387 381 ---------------------------------------------PSGLKELIVSGNRLT-SLPVL---PSELKELMVSG 411 (788)
T ss_pred ---------------------------------------------ccccceEEecCCccc-CCCCc---ccCCCEEEccC
Confidence 234566777777777 46643 35677788888
Q ss_pred ccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCC
Q 004747 594 NFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 649 (732)
Q Consensus 594 N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 649 (732)
|++++ +|.+ ..+|+.|++++|+|+ .+|..+.+++.|+.|++++|+|+|.+|.
T Consensus 412 N~Lss-IP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 412 NRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CcCCC-CCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 88874 5652 246777888888887 6777788888888888888888877664
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=4.1e-24 Score=210.51 Aligned_cols=409 Identities=22% Similarity=0.219 Sum_probs=245.8
Q ss_pred cCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccccccc----ccEEECCCCcCccccCchhhcccccCeee
Q 004747 180 MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS----LLVLNLGSNRFSGTLPCFAASAMSLTVLK 255 (732)
Q Consensus 180 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~----L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 255 (732)
..-..++|..|+|+...|.+|+.+++|+.|||++|.|+.+.|+.|.. ++.++.++|+|+......|+.+..++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 34556777777777666667777777777777777777777776654 23334444777765566778888888888
Q ss_pred CCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCC------------CCchhhhhcCCC
Q 004747 256 LDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSG------------PLPSKIAQTTEK 323 (732)
Q Consensus 256 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~------------~~p~~~~~l~~~ 323 (732)
+.-|++.-...+.|..+++|..|.+.+|.+...--..+..+..++.+.+..|.+.. ..|..++...
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar-- 224 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR-- 224 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce--
Confidence 88888877777788888888888888888764433467777888888887776321 0111111111
Q ss_pred CCccEEeCCCCcccCCCcccccC-CCCCCEEeccCccCCCccc-cccCCCCCCCEEEccCCcCccccCccccCCcCccee
Q 004747 324 AGLVLLDLSHNRFSGEIPLKITE-LKSLQALFLSNNLLIGEIP-ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLAL 401 (732)
Q Consensus 324 ~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 401 (732)
...-..+.+.++...-+..+.. +..+..=-.+.+...+.-| ..|..+++|+.|++++|++++..+.+|.+...+++|
T Consensus 225 -c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 225 -CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred -ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 1111222233332222222211 1112111122233333333 357888899999999999988888888888888888
Q ss_pred ecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccc-hhhhhcCCCCCEEEcccCCC
Q 004747 402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL-NDAITKWTNLKYFSIARNKL 480 (732)
Q Consensus 402 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l 480 (732)
.+..|++...-...|.++..|+.|+|++|+|+...|..|..+.+|.+|++-.|.+-..- -.|++.+ ++++.-
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W-------lr~~~~ 376 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW-------LRKKSV 376 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH-------HhhCCC
Confidence 88888888777777888888999999999998888888888888888888888765321 2333332 112221
Q ss_pred ccccchhhhcCCCCCEEEccCCcCccc---CCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhh
Q 004747 481 SGNLPNWLFSFQAIQMMDFSTNKFMGF---IPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNY 557 (732)
Q Consensus 481 ~~~~p~~~~~~~~L~~L~ls~N~l~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (732)
.|. |. ...-..++.++++++.+... -|++. .... .....+.. .+. ....+.+...++.. -..
T Consensus 377 ~~~-~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~-----~~~~--s~~cP~~c-~c~--~tVvRcSnk~lk~l---p~~ 441 (498)
T KOG4237|consen 377 VGN-PR-CQSPGFVRQIPISDVAFGDFRCGGPEEL-----GCLT--SSPCPPPC-TCL--DTVVRCSNKLLKLL---PRG 441 (498)
T ss_pred CCC-CC-CCCCchhccccchhccccccccCCcccc-----CCCC--CCCCCCCc-chh--hhhHhhcccchhhc---CCC
Confidence 111 11 11222345555655554321 11110 0000 00000000 000 00000000000000 001
Q ss_pred hcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCC
Q 004747 558 QLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHN 617 (732)
Q Consensus 558 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N 617 (732)
....-+.+.+.+|.++ .+|.+ .+.+| .+|+|+|+++..--. +.++++|.+|-||+|
T Consensus 442 iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 442 IPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 1233467889999998 89988 67888 999999999854444 889999999999987
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.1e-21 Score=217.62 Aligned_cols=264 Identities=25% Similarity=0.341 Sum_probs=169.1
Q ss_pred cccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccE
Q 004747 249 MSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVL 328 (732)
Q Consensus 249 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~ 328 (732)
..-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. .+++|++|++++|+++ .+|... ++|+.
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp------~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVLP------PGLLE 266 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCcc------cccce
Confidence 34678999999998 5787765 489999999999984 554 3589999999999999 455421 38999
Q ss_pred EeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccc
Q 004747 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL 408 (732)
Q Consensus 329 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 408 (732)
|++++|.++ .+|... ++|+.|++++|+++ .+|.. .++|+.|++++|.+++ +|.. ..+|+.|.+++|.+
T Consensus 267 L~Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L 334 (788)
T PRK15387 267 LSIFSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQL 334 (788)
T ss_pred eeccCCchh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcc
Confidence 999999998 566533 57889999999998 45542 4789999999999984 4431 12345555555555
Q ss_pred cccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhh
Q 004747 409 SGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL 488 (732)
Q Consensus 409 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 488 (732)
++ +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|++. .+|..
T Consensus 335 ~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---------------------------p~~L~~L~Ls~N~L~-~LP~l- 380 (788)
T PRK15387 335 TS-LPTL---PSGLQELSVSDNQLAS-LPTL---------------------------PSELYKLWAYNNRLT-SLPAL- 380 (788)
T ss_pred cc-cccc---ccccceEecCCCccCC-CCCC---------------------------Ccccceehhhccccc-cCccc-
Confidence 43 2210 1234445555544442 2221 134444555555554 23332
Q ss_pred hcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEcc
Q 004747 489 FSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLS 568 (732)
Q Consensus 489 ~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 568 (732)
..+|+.|++++|++++ +|.. ...|+.|+++
T Consensus 381 --~~~L~~LdLs~N~Lt~-LP~l-----------------------------------------------~s~L~~LdLS 410 (788)
T PRK15387 381 --PSGLKELIVSGNRLTS-LPVL-----------------------------------------------PSELKELMVS 410 (788)
T ss_pred --ccccceEEecCCcccC-CCCc-----------------------------------------------ccCCCEEEcc
Confidence 2345566666666542 2211 2345566777
Q ss_pred CCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCC
Q 004747 569 DNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNI 627 (732)
Q Consensus 569 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l 627 (732)
+|+++ .+|.. ..+|+.|++++|+++ .+|. +.++++|+.|+|++|.+++.+|..+
T Consensus 411 ~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 411 GNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 77766 45543 235666777777776 4565 6677777777777777777666555
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=1e-19 Score=205.67 Aligned_cols=290 Identities=23% Similarity=0.330 Sum_probs=147.4
Q ss_pred cCCHHhHHHHHHHHhcCCCCC---CCCCCC-CCCCCCCccc----------------eeecCCCCcEEEEEcCCCCCccc
Q 004747 38 ELNLEDKASLLLFKSLVQDPT---QKLSSW-VGSNCTNWTG----------------VACNFQTGHVVSINLTDTSLSGQ 97 (732)
Q Consensus 38 ~~~~~~~~~l~~~k~~~~~~~---~~l~~w-~~~~~c~w~g----------------v~c~~~~~~v~~L~L~~~~l~~~ 97 (732)
...+++.+.+++..+.+.-|. ..-+.| .+.+.|.-.. |.|. .+.|+.+...+......
T Consensus 59 ~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~~~~ 136 (754)
T PRK15370 59 TASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQASS 136 (754)
T ss_pred CCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCccccccccccccccc
Confidence 345677778888888887762 223458 5567886443 5563 45666666554322111
Q ss_pred cc--c--------------------------cc-----cCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCC
Q 004747 98 VH--P--------------------------RL-----CKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVG 144 (732)
Q Consensus 98 ~~--~--------------------------~l-----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 144 (732)
.. . .. +-..+...|+++++.++ .+|..+. +.|+.|+|++|.++
T Consensus 137 ~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt- 212 (754)
T PRK15370 137 ASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK- 212 (754)
T ss_pred CCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-
Confidence 00 0 00 11234566777776666 3454432 45677777777776
Q ss_pred CCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccccc
Q 004747 145 VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY 224 (732)
Q Consensus 145 ~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 224 (732)
.+|..+. ++|++|++++|. +. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|+++.......
T Consensus 213 sLP~~l~--~nL~~L~Ls~N~-Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~ 282 (754)
T PRK15370 213 SLPENLQ--GNIKTLYANSNQ-LT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLP 282 (754)
T ss_pred cCChhhc--cCCCEEECCCCc-cc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccC
Confidence 3444432 467777777663 33 3444332 45666777776666 4555443 356666666666664322223
Q ss_pred ccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEc
Q 004747 225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDL 304 (732)
Q Consensus 225 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 304 (732)
.+|+.|++++|++++ +|..+. ++|+.|++++|.++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++
T Consensus 283 ~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~L 353 (754)
T PRK15370 283 EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDV 353 (754)
T ss_pred CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEEC
Confidence 346666666666553 332221 245555555555553 33222 2345555555555543 333221 34555555
Q ss_pred cCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCC
Q 004747 305 SFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLI 361 (732)
Q Consensus 305 s~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 361 (732)
++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ..|+.|++++|++.
T Consensus 354 s~N~L~-~LP~~lp-----~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 354 SKNQIT-VLPETLP-----PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred CCCCCC-cCChhhc-----CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence 555554 2333321 14555555555554 2333322 23444455555444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=8.8e-20 Score=206.16 Aligned_cols=118 Identities=26% Similarity=0.434 Sum_probs=70.8
Q ss_pred ccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEE
Q 004747 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLL 329 (732)
Q Consensus 250 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L 329 (732)
+.+.|+++++.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+.. +|+.|
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~~-----~L~~L 246 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLPD-----TIQEM 246 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhhc-----cccEE
Confidence 4567777777766 3454442 46777777777776 3444332 46777777777766 44544332 56677
Q ss_pred eCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCc
Q 004747 330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385 (732)
Q Consensus 330 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 385 (732)
++++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred ECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 77777766 4555443 35666666666666 3454442 35666666666665
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=8.5e-20 Score=192.06 Aligned_cols=279 Identities=24% Similarity=0.210 Sum_probs=145.3
Q ss_pred EEEccCCCCC-CCCchhhhhcCCCCCccEEeCCCCcccCC----CcccccCCCCCCEEeccCccCCC------ccccccC
Q 004747 301 LLDLSFNDLS-GPLPSKIAQTTEKAGLVLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIG------EIPARIG 369 (732)
Q Consensus 301 ~L~Ls~n~l~-~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~ 369 (732)
.|+|..+.++ +.....+..+. .|+.++++++.++.. ++..+...+++++++++++.+.+ .++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~---~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLL---CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHHHh---hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 3556666665 23333333344 567777777766432 33344455556666666665542 1223344
Q ss_pred CCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceee----eccccCCCC-C
Q 004747 370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG----EIPLTLAGL-K 444 (732)
Q Consensus 370 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l-~ 444 (732)
.+++|+.|++++|.+.+..+..+..+.. . ++|+.|++++|.+++ .+...+..+ +
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~ 137 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCC
Confidence 4555555555555554333322222211 1 236666666665552 122233344 5
Q ss_pred CCCEEEccCCccccc----chhhhhcCCCCCEEEcccCCCccc----cchhhhcCCCCCEEEccCCcCcccCCcccccCc
Q 004747 445 SLEIVDFSSNNLSGS----LNDAITKWTNLKYFSIARNKLSGN----LPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFS 516 (732)
Q Consensus 445 ~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~ 516 (732)
+|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++.....+.
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~--- 214 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA--- 214 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH---
Confidence 666666666666632 233444556666777766666532 233344455677777777666432111100
Q ss_pred cccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCccccc-----ccCCceeec
Q 004747 517 LNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ-----LQGLEYLNL 591 (732)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~-----l~~L~~L~L 591 (732)
.....+++|++||+++|.+++.....+.. .+.|++|++
T Consensus 215 -------------------------------------~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 215 -------------------------------------ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257 (319)
T ss_pred -------------------------------------HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence 01112456677777777766433322222 257777777
Q ss_pred cccccee----cCCc-ccCccCCcEEeCCCCcCccc----CCcCCCCC-CCCCEEEcccCcc
Q 004747 592 SFNFLDG----QVPG-LYRLRSLRALDLSHNSLTGQ----IPGNISSL-QELTLLNLSYNSF 643 (732)
Q Consensus 592 s~N~l~~----~ip~-l~~l~~L~~LdLs~N~l~~~----ip~~l~~l-~~L~~L~ls~N~l 643 (732)
++|.++. .+.. +..+++|+++|+++|.++.. ....+... +.|+++++.+|++
T Consensus 258 ~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 7777751 1222 44556777777777777744 33334444 5677777777754
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=3e-19 Score=187.94 Aligned_cols=261 Identities=22% Similarity=0.291 Sum_probs=135.5
Q ss_pred hhhcccccCeeeCCCCccccc----cchhhhccCCCCEEEeccCCCCC------cCccccccCcCCcEEEccCCCCCCCC
Q 004747 244 FAASAMSLTVLKLDNNSVVGG----IPTCIASLQALTHLNLSHNHLNY------EISPRLVFFEKLLLLDLSFNDLSGPL 313 (732)
Q Consensus 244 ~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~~~~l~~l~~L~~L~Ls~n~l~~~~ 313 (732)
.+..+.+|++|+++++.++.. ++..+...+++++++++++.+.+ .++..+..+++|+.|++++|.+.+..
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 334444455555555554321 22333344455555555554431 12233444556666666666555444
Q ss_pred chhhhhcCCCCCccEEeCCCCcccC----CCcccccCC-CCCCEEeccCccCCCc----cccccCCCCCCCEEEccCCcC
Q 004747 314 PSKIAQTTEKAGLVLLDLSHNRFSG----EIPLKITEL-KSLQALFLSNNLLIGE----IPARIGNLTYLQVIDLSHNML 384 (732)
Q Consensus 314 p~~~~~l~~~~~L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l 384 (732)
+..+..+...++|++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..+..+++|+.|++++|.+
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 4444443311236666666665542 122233344 5666666666666532 223344555666666666665
Q ss_pred ccc----cCccccCCcCcceeeccccccccc----CcccccCCCCCcEEEcccCceeeeccccC-----CCCCCCCEEEc
Q 004747 385 SGS----IPLNIVGCFQLLALIVNNNNLSGE----IQPELDALDSLKILDISNNQISGEIPLTL-----AGLKSLEIVDF 451 (732)
Q Consensus 385 ~~~----~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L 451 (732)
++. ++..+...++|+.|++++|.+.+. +...+..+++|++|++++|.+++.....+ ...+.|+.|++
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence 531 222233344566666666555432 22334556677777777777664222111 12367777777
Q ss_pred cCCcccc----cchhhhhcCCCCCEEEcccCCCccc----cchhhhcC-CCCCEEEccCCcC
Q 004747 452 SSNNLSG----SLNDAITKWTNLKYFSIARNKLSGN----LPNWLFSF-QAIQMMDFSTNKF 504 (732)
Q Consensus 452 s~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~~-~~L~~L~ls~N~l 504 (732)
++|.+++ .+...+..+++|+++++++|.+... +...+... +.++.+++.+|++
T Consensus 258 ~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 7777762 2233445566777777777777633 33344444 5677777777653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=5.3e-18 Score=148.76 Aligned_cols=184 Identities=27% Similarity=0.338 Sum_probs=120.2
Q ss_pred cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhccc
Q 004747 101 RLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM 180 (732)
Q Consensus 101 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~ 180 (732)
.+.++.+.+.|.||+|+++ .+|..+..+.+|++|++++|+|+ ..|.+++.+++|+.|+++-|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmn---------------- 89 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMN---------------- 89 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchh----------------
Confidence 4556666777777777776 44555777777777777777776 55666666666666555544
Q ss_pred CCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCc
Q 004747 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS 260 (732)
Q Consensus 181 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 260 (732)
++. ..|..|+.++.|+.|||.+|++... .+|..|..++.|+.|++++|.
T Consensus 90 ----------rl~-~lprgfgs~p~levldltynnl~e~--------------------~lpgnff~m~tlralyl~dnd 138 (264)
T KOG0617|consen 90 ----------RLN-ILPRGFGSFPALEVLDLTYNNLNEN--------------------SLPGNFFYMTTLRALYLGDND 138 (264)
T ss_pred ----------hhh-cCccccCCCchhhhhhccccccccc--------------------cCCcchhHHHHHHHHHhcCCC
Confidence 443 5677777777777777777766421 455566666777777777777
Q ss_pred cccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcc
Q 004747 261 VVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRF 336 (732)
Q Consensus 261 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l 336 (732)
+. .+|..++++++|+.|.+.+|.+- ..|.+++.++.|++|.+.+|+++ .+|+.++.+....+=+.+.+.+|..
T Consensus 139 fe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 139 FE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred cc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCC
Confidence 76 56677777777777777777665 56777777777777777777776 5666665543222333344444444
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.63 E-value=4.8e-16 Score=175.58 Aligned_cols=116 Identities=37% Similarity=0.530 Sum_probs=103.7
Q ss_pred cceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcc
Q 004747 561 SAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLS 639 (732)
Q Consensus 561 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 639 (732)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|. ++.+++|+.|||++|+++|.+|+.++++++|++||++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 467899999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred cCcceeeCCCCCCC--CCcCc-cccCCCCCCCCCCCCCCC
Q 004747 640 YNSFSGFVPWKQGY--QKFPG-AFAGNPNLCLESSHGECN 676 (732)
Q Consensus 640 ~N~l~g~ip~~~~~--~~~~~-~~~gn~~lcg~~~~~~c~ 676 (732)
+|+++|.+|....- ..... .+.||+.+||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999975321 12223 789999999977666775
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.63 E-value=2e-15 Score=170.59 Aligned_cols=152 Identities=32% Similarity=0.575 Sum_probs=128.6
Q ss_pred CCHHhHHHHHHHHhcCCCCCCCCCCCCCCCCC----CccceeecCC--C--CcEEEEEcCCCCCcccccccccCCCCCCE
Q 004747 39 LNLEDKASLLLFKSLVQDPTQKLSSWVGSNCT----NWTGVACNFQ--T--GHVVSINLTDTSLSGQVHPRLCKLSFLEF 110 (732)
Q Consensus 39 ~~~~~~~~l~~~k~~~~~~~~~l~~w~~~~~c----~w~gv~c~~~--~--~~v~~L~L~~~~l~~~~~~~l~~l~~L~~ 110 (732)
...+|.+||+.+|+.+.++.. .+|.++.|+ .|.||.|... . .+|+.|+|+++.+.|.+|..+.++++|+.
T Consensus 369 t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~ 446 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS 446 (623)
T ss_pred cCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCE
Confidence 345678899999999876532 489877774 7999999532 2 25899999999999999999999999999
Q ss_pred EECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCc
Q 004747 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN 190 (732)
Q Consensus 111 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n 190 (732)
|+|++|.+.|.+|..++.+++|++|||++|+++|.+|..++++++|++|+|++| .+.|.+|..++....++..+++.+|
T Consensus 447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC-cccccCChHHhhccccCceEEecCC
Confidence 999999999999999999999999999999999999999999999999999999 6788888887765356677888777
Q ss_pred ccc
Q 004747 191 SFC 193 (732)
Q Consensus 191 ~l~ 193 (732)
...
T Consensus 526 ~~l 528 (623)
T PLN03150 526 AGL 528 (623)
T ss_pred ccc
Confidence 643
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=1.2e-17 Score=146.53 Aligned_cols=165 Identities=25% Similarity=0.366 Sum_probs=142.2
Q ss_pred CCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEE
Q 004747 80 QTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159 (732)
Q Consensus 80 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 159 (732)
...++++|.|+.|.++ .+|+.+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3458899999999987 67889999999999999999998 78889999999999999999998 889999999999999
Q ss_pred eCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCcc
Q 004747 160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSG 239 (732)
Q Consensus 160 ~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~ 239 (732)
||.+|..-...+|..+..+ +.|+.|.|+.|.+. .+|..++++++|+.|.+.+|.+-
T Consensus 108 dltynnl~e~~lpgnff~m-~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll---------------------- 163 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL---------------------- 163 (264)
T ss_pred hccccccccccCCcchhHH-HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh----------------------
Confidence 9999977778888888888 88999999999987 78888899988888888888764
Q ss_pred ccCchhhcccccCeeeCCCCccccccchhhhcc
Q 004747 240 TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASL 272 (732)
Q Consensus 240 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 272 (732)
.+|..++.++.|++|.+.+|+++ .+|..++++
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 56777777788888888888777 455555544
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=3.3e-11 Score=130.54 Aligned_cols=178 Identities=34% Similarity=0.472 Sum_probs=90.6
Q ss_pred CCCcEEEcccCceeeeccccCCCCC-CCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEE
Q 004747 420 DSLKILDISNNQISGEIPLTLAGLK-SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMD 498 (732)
Q Consensus 420 ~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ 498 (732)
+.++.|++.+|.++ .++......+ +|+.|++++|++. .+|..+..+++|+.|++++|++. .+|......++|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 44555555555555 3333333332 5555555555554 23334455555555555555555 4444444555555555
Q ss_pred ccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCc
Q 004747 499 FSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPK 578 (732)
Q Consensus 499 ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~ 578 (732)
+++|++.. +|... .....|+++++++|.+. .++.
T Consensus 193 ls~N~i~~-l~~~~--------------------------------------------~~~~~L~~l~~~~N~~~-~~~~ 226 (394)
T COG4886 193 LSGNKISD-LPPEI--------------------------------------------ELLSALEELDLSNNSII-ELLS 226 (394)
T ss_pred ccCCcccc-Cchhh--------------------------------------------hhhhhhhhhhhcCCcce-ecch
Confidence 55555541 22210 00233555556665433 4555
Q ss_pred ccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCC
Q 004747 579 GLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 648 (732)
Q Consensus 579 ~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 648 (732)
.+.++..+..|.+++|++...+-.++.++++++|++++|.++. ++. +..+.+++.|++++|.++...|
T Consensus 227 ~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhhhcccccccccCCceeeeccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence 5556666666666666655322225556666666666666663 222 5556666666666666655544
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=2.6e-12 Score=133.55 Aligned_cols=195 Identities=32% Similarity=0.430 Sum_probs=157.3
Q ss_pred cCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCC
Q 004747 272 LQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQ 351 (732)
Q Consensus 272 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 351 (732)
+.--...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+..+. .|.++|++.|+++ ..|..++.++ |+
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~---~lt~l~ls~NqlS-~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLE---ALTFLDLSSNQLS-HLPDGLCDLP-LK 146 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhh---HHHHhhhccchhh-cCChhhhcCc-ce
Confidence 334456788888887 77888888888999999999887 7888888877 7899999999998 7888888776 89
Q ss_pred EEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCc
Q 004747 352 ALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQ 431 (732)
Q Consensus 352 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 431 (732)
.|-+++|+++ .+|..++....|..||.+.|.+. .+|..++++.+|+.|.+..|++... |..+..+ .|..||++.|+
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~l-p~El~~L-pLi~lDfScNk 222 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDL-PEELCSL-PLIRLDFSCNK 222 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhC-CHHHhCC-ceeeeecccCc
Confidence 9999999987 78888888889999999999987 7788888889999999999988754 4445544 58899999999
Q ss_pred eeeeccccCCCCCCCCEEEccCCcccccchhhhh---cCCCCCEEEcccCC
Q 004747 432 ISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT---KWTNLKYFSIARNK 479 (732)
Q Consensus 432 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~ 479 (732)
++ .+|..|.+|+.|++|-|.+|.+. ..|..+. ...=.++|+..-++
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 98 78888999999999999999987 4555543 33445677777764
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=2.5e-12 Score=133.63 Aligned_cols=194 Identities=25% Similarity=0.401 Sum_probs=155.5
Q ss_pred cccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccE
Q 004747 249 MSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVL 328 (732)
Q Consensus 249 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~ 328 (732)
..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+.++..|.++||+.|+++ ..|..+..++ |+.
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp----Lkv 147 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP----LKV 147 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc----cee
Confidence 34456677888776 57777778888888888888876 67778888888888888888887 7787787776 899
Q ss_pred EeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccc
Q 004747 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL 408 (732)
Q Consensus 329 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 408 (732)
|-+++|+++ .+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+. .-.|..|+++.|++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKI 223 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCce
Confidence 999999998 78888888889999999999987 67778899999999999999887 6777777 55788999999998
Q ss_pred cccCcccccCCCCCcEEEcccCceeeeccccCCCC---CCCCEEEccCCc
Q 004747 409 SGEIQPELDALDSLKILDISNNQISGEIPLTLAGL---KSLEIVDFSSNN 455 (732)
Q Consensus 409 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~N~ 455 (732)
+ .+|..|.+|+.|++|.|.+|.+. ..|..+... .=.++|+..-++
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 7 67888999999999999999998 455444322 224567766664
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=1.7e-10 Score=124.91 Aligned_cols=139 Identities=34% Similarity=0.507 Sum_probs=74.8
Q ss_pred chhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCC
Q 004747 243 CFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE 322 (732)
Q Consensus 243 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 322 (732)
..+..+++|+.|++++|++. .+|...+..+.|+.|++++|++. .+|........|+++.+++|... ..+..+..+.
T Consensus 157 ~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~- 232 (394)
T COG4886 157 SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLK- 232 (394)
T ss_pred hhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcc-
Confidence 34455555666666666555 23333335555666666666555 34443344444555566555322 2233333333
Q ss_pred CCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCc
Q 004747 323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL 390 (732)
Q Consensus 323 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 390 (732)
++..+.+.+|++. .++..++.+++++.|++++|.++. ++. ++.+.+++.|++++|.+....|.
T Consensus 233 --~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 233 --NLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred --cccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchh
Confidence 4555556666655 235555666666677777666663 333 66666667777766666644443
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=1.4e-11 Score=118.28 Aligned_cols=206 Identities=23% Similarity=0.239 Sum_probs=136.9
Q ss_pred CccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCC---cccccchhhhh
Q 004747 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSN---NLSGSLNDAIT 465 (732)
Q Consensus 389 p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~ 465 (732)
|-.+....+|.++.++.+.-..... ....-+.|+++.+.+..+.. .|. +--.+.+ -|.+.- -..|..-..+.
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~--~D~~~~E~~t~~G~~~~~~d 281 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQD-VPS-LLPETIL--ADPSGSEPSTSNGSALVSAD 281 (490)
T ss_pred ccchHHhhhhheeeeeccchhheec-eeecCchhheeeeecccccc-ccc-ccchhhh--cCccCCCCCccCCceEEecc
Confidence 3334445566667666664332211 11223566777666655442 111 1111111 122111 12233333344
Q ss_pred cCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEE
Q 004747 466 KWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISV 545 (732)
Q Consensus 466 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (732)
.+..|+.+||++|.|+ .+.++..-.+.++.|++|+|.+...-.
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n------------------------------------ 324 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN------------------------------------ 324 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh------------------------------------
Confidence 5678999999999988 677778888999999999998852110
Q ss_pred EeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccC-C
Q 004747 546 TAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQI-P 624 (732)
Q Consensus 546 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~i-p 624 (732)
...+.+|+.||||+|.++ .+-.+-..+-+.+.|+|++|.+. ...+++++-+|..||+++|+|...- -
T Consensus 325 ----------La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV 392 (490)
T KOG1259|consen 325 ----------LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDEV 392 (490)
T ss_pred ----------hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhhhhHhhhhheeccccccchhhHHHh
Confidence 112778899999999998 56666667888999999999986 5666888999999999999997532 3
Q ss_pred cCCCCCCCCCEEEcccCcceeeCC
Q 004747 625 GNISSLQELTLLNLSYNSFSGFVP 648 (732)
Q Consensus 625 ~~l~~l~~L~~L~ls~N~l~g~ip 648 (732)
..+++++.|+.+.+.+|++.+.+.
T Consensus 393 ~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred cccccccHHHHHhhcCCCccccch
Confidence 568899999999999999998753
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.8e-11 Score=121.36 Aligned_cols=185 Identities=24% Similarity=0.294 Sum_probs=118.7
Q ss_pred ccCCCCCcEEEcccCceeeecc--ccCCCCCCCCEEEccCCcccccchhh-hhcCCCCCEEEcccCCCcc-ccchhhhcC
Q 004747 416 LDALDSLKILDISNNQISGEIP--LTLAGLKSLEIVDFSSNNLSGSLNDA-ITKWTNLKYFSIARNKLSG-NLPNWLFSF 491 (732)
Q Consensus 416 ~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~-~~p~~~~~~ 491 (732)
...|++++.|||+.|-+..-.+ .....+++|+.|+++.|++....... -..++.|+.|.|++|.++- .+-.....+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 4556777777777776653222 23456777777777777776322211 1246778888888888762 233445667
Q ss_pred CCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCc
Q 004747 492 QAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNL 571 (732)
Q Consensus 492 ~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 571 (732)
++|+.|++.+|...+. . .+. ...+..|+.|||++|+
T Consensus 222 Psl~~L~L~~N~~~~~--~-~~~-----------------------------------------~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILI--K-ATS-----------------------------------------TKILQTLQELDLSNNN 257 (505)
T ss_pred CcHHHhhhhcccccce--e-cch-----------------------------------------hhhhhHHhhccccCCc
Confidence 8888888888852110 0 000 0125677888998888
Q ss_pred ccccCC--cccccccCCceeecccccceec-CCcc------cCccCCcEEeCCCCcCcccCC--cCCCCCCCCCEEEccc
Q 004747 572 LHGTIP--KGLFQLQGLEYLNLSFNFLDGQ-VPGL------YRLRSLRALDLSHNSLTGQIP--GNISSLQELTLLNLSY 640 (732)
Q Consensus 572 l~g~ip--~~l~~l~~L~~L~Ls~N~l~~~-ip~l------~~l~~L~~LdLs~N~l~~~ip--~~l~~l~~L~~L~ls~ 640 (732)
+. ..+ ...+.++.|+.|+++.+.+... .|+. ..+++|++|++++|++. ..+ ..+..+.+|+.|.+-.
T Consensus 258 li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 258 LI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred cc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccc
Confidence 86 344 4466788888899988888742 2223 45788999999999985 222 3445567778888888
Q ss_pred Ccceee
Q 004747 641 NSFSGF 646 (732)
Q Consensus 641 N~l~g~ 646 (732)
|.|+..
T Consensus 336 n~ln~e 341 (505)
T KOG3207|consen 336 NYLNKE 341 (505)
T ss_pred cccccc
Confidence 888643
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.4e-11 Score=120.89 Aligned_cols=215 Identities=25% Similarity=0.237 Sum_probs=96.5
Q ss_pred ccCCCCCCEEECCCCCCCCCCC-ccccCCCCCCEEeCCCCCCCCCcCC--chhhhcccCCcEEEeeCcccccccCcc-cC
Q 004747 126 FGGLSGLKTLDLSYNKFVGVVP-DAIMKLRNLRELILKGNPELGGVFP--GWVGNFSMNLEKLDFSFNSFCGEIPES-LY 201 (732)
Q Consensus 126 ~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~~~~~~~p--~~~~~l~~~L~~L~Ls~n~l~~~~p~~-l~ 201 (732)
-+++++|+.+.|.++.+..... .....|++++.|||+.| ++....| .....+ ++|+.|+++.|.+....... -.
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqL-p~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQL-PSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhc-ccchhcccccccccCCccccchh
Confidence 3456777777777766652211 24456777777777777 4332211 112233 56666666666654222111 11
Q ss_pred CCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEec
Q 004747 202 YLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLS 281 (732)
Q Consensus 202 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 281 (732)
.+++|+.|.|+.|.++... +-.....+++|+.|++..|...........-+..|++|||+
T Consensus 195 ~l~~lK~L~l~~CGls~k~--------------------V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKD--------------------VQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred hhhhhheEEeccCCCCHHH--------------------HHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 3455555555555554211 11112233444444444443211112222233444444444
Q ss_pred cCCCCCc-CccccccCcCCcEEEccCCCCCCC-Cch--hhhhcCCCCCccEEeCCCCcccCC-CcccccCCCCCCEEecc
Q 004747 282 HNHLNYE-ISPRLVFFEKLLLLDLSFNDLSGP-LPS--KIAQTTEKAGLVLLDLSHNRFSGE-IPLKITELKSLQALFLS 356 (732)
Q Consensus 282 ~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~-~p~--~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls 356 (732)
+|++-.. .-...+.++.|+.|+++.+.+... .|+ ........++|++|+++.|++... .-..+..+++|+.|.+.
T Consensus 255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 4443211 112234444444444444444321 011 111122233566666666666411 11223445666666666
Q ss_pred CccCCC
Q 004747 357 NNLLIG 362 (732)
Q Consensus 357 ~n~l~~ 362 (732)
.|.++.
T Consensus 335 ~n~ln~ 340 (505)
T KOG3207|consen 335 LNYLNK 340 (505)
T ss_pred cccccc
Confidence 666653
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=5.7e-11 Score=117.01 Aligned_cols=192 Identities=18% Similarity=0.198 Sum_probs=101.7
Q ss_pred cccCcCCcEEEccCCCCCCCCchhhhhc-CCCCCccEEeCCCCcccCCC-------------cccccCCCCCCEEeccCc
Q 004747 293 LVFFEKLLLLDLSFNDLSGPLPSKIAQT-TEKAGLVLLDLSHNRFSGEI-------------PLKITELKSLQALFLSNN 358 (732)
Q Consensus 293 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~~~~L~~L~Ls~n~l~~~~-------------p~~l~~l~~L~~L~Ls~n 358 (732)
+..+++|+++|||+|.+.-..++.+..+ .+...|+.|.|.+|.+.-.- ......-+.|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 3445667777777776654444443331 22335666666666654110 011222345555555555
Q ss_pred cCCCc----cccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceee
Q 004747 359 LLIGE----IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG 434 (732)
Q Consensus 359 ~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 434 (732)
++... +...|...+.|+.+.++.|.+...-.. .+...+..+++|++|||.+|.++.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~--------------------al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT--------------------ALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhH--------------------HHHHHHHhCCcceeeecccchhhh
Confidence 54321 122333444555555555544311000 122345567777777777776653
Q ss_pred e----ccccCCCCCCCCEEEccCCcccccchhhh-----hcCCCCCEEEcccCCCccc----cchhhhcCCCCCEEEccC
Q 004747 435 E----IPLTLAGLKSLEIVDFSSNNLSGSLNDAI-----TKWTNLKYFSIARNKLSGN----LPNWLFSFQAIQMMDFST 501 (732)
Q Consensus 435 ~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~----~p~~~~~~~~L~~L~ls~ 501 (732)
. +...+..+++|++|++++|.+.......+ ...++|++|.+.+|.++.. +-..+...+.|..|++++
T Consensus 228 egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 228 EGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 2 22345566677777777777764333322 2356777777777777532 223344567777788888
Q ss_pred CcC
Q 004747 502 NKF 504 (732)
Q Consensus 502 N~l 504 (732)
|.+
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 877
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=1.3e-10 Score=111.68 Aligned_cols=104 Identities=32% Similarity=0.315 Sum_probs=57.8
Q ss_pred CCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCE
Q 004747 273 QALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQA 352 (732)
Q Consensus 273 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 352 (732)
+.|+++||++|.++ .+..+..-.++++.|++|+|.+. .++++..+++|+.||+|+|.++ .+..|-.++.+++.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-----~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-----TVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-----eehhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 44555555555554 34444555556666666666555 1222333336666666666665 34444455566666
Q ss_pred EeccCccCCCccccccCCCCCCCEEEccCCcCc
Q 004747 353 LFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385 (732)
Q Consensus 353 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 385 (732)
|.|+.|.+... ..++++-+|..||+++|++.
T Consensus 357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred eehhhhhHhhh--hhhHhhhhheeccccccchh
Confidence 66766666421 34556666667777776664
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.98 E-value=8e-11 Score=115.99 Aligned_cols=61 Identities=28% Similarity=0.371 Sum_probs=26.9
Q ss_pred CccEEeCCCCcccCC----CcccccCCCCCCEEeccCccCCCcccccc-----CCCCCCCEEEccCCcCc
Q 004747 325 GLVLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIGEIPARI-----GNLTYLQVIDLSHNMLS 385 (732)
Q Consensus 325 ~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~ 385 (732)
+|+.|||.+|.++.. +...+..+++|+.|++++|.+...-...+ ...++|+.+.+.+|.++
T Consensus 214 ~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 214 HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 444444444444311 22233444555555555555543222111 12445555555555554
No 35
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.92 E-value=1.5e-10 Score=125.62 Aligned_cols=243 Identities=29% Similarity=0.329 Sum_probs=145.2
Q ss_pred CccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecc
Q 004747 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (732)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (732)
.++.+.+..|.+.. +-..+..+.+|+.|++.+|.+... ...+..+++|++|++++|.|+
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~------------------- 131 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT------------------- 131 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-------------------
Confidence 45555555555542 222344455555555555555522 111444555555555555554
Q ss_pred cccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccch-hhhhcCCCCCEEEcccCCCccc
Q 004747 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGN 483 (732)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~ 483 (732)
...+ +..++.|+.|++++|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+..
T Consensus 132 -----~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~- 200 (414)
T KOG0531|consen 132 -----KLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE- 200 (414)
T ss_pred -----cccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-
Confidence 2211 34455577777777777632 234456777777777777764433 1 4566777777777777652
Q ss_pred cchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcc--c
Q 004747 484 LPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLF--S 561 (732)
Q Consensus 484 ~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ 561 (732)
...+..+..+..+++..|.++..-+.. .+. +
T Consensus 201 -i~~~~~~~~l~~~~l~~n~i~~~~~l~----------------------------------------------~~~~~~ 233 (414)
T KOG0531|consen 201 -IEGLDLLKKLVLLSLLDNKISKLEGLN----------------------------------------------ELVMLH 233 (414)
T ss_pred -ccchHHHHHHHHhhcccccceeccCcc----------------------------------------------cchhHH
Confidence 222333344444466666654211110 011 3
Q ss_pred ceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCccc---CCcC-CCCCCCCCEEE
Q 004747 562 AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQ---IPGN-ISSLQELTLLN 637 (732)
Q Consensus 562 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~L~ 637 (732)
|+.+++++|++. .++..+..+..+..|++++|++. ....+.....+..+..+.|.+... .... ....+.+....
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS-NLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLT 311 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccc-ccccccccchHHHhccCcchhcchhhhhccccccccccccccc
Confidence 678889999987 56567778889999999999887 344466677888888888887632 2222 45677888999
Q ss_pred cccCcceeeCC
Q 004747 638 LSYNSFSGFVP 648 (732)
Q Consensus 638 ls~N~l~g~ip 648 (732)
+.+|+.....+
T Consensus 312 ~~~~~~~~~~~ 322 (414)
T KOG0531|consen 312 LELNPIRKISS 322 (414)
T ss_pred cccCccccccc
Confidence 99998877655
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=4.3e-09 Score=121.86 Aligned_cols=105 Identities=30% Similarity=0.356 Sum_probs=60.1
Q ss_pred CCCEEECCCCC--CCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcE
Q 004747 107 FLEFLVLSSNA--FTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEK 184 (732)
Q Consensus 107 ~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~ 184 (732)
.|++|-+..|. +.......|..++.|++||||+|.=-+.+|..++++-+||+|+|++... ..+|..++++ ..|.+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~L-k~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNL-KKLIY 622 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--cccchHHHHH-Hhhhe
Confidence 46666555554 3323333455566666666666555556666666666666666666532 2556666666 56666
Q ss_pred EEeeCcccccccCcccCCCCCCCEEEeecc
Q 004747 185 LDFSFNSFCGEIPESLYYLKSLKHLDLEKN 214 (732)
Q Consensus 185 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 214 (732)
|++..+.....+|.....+++|++|.+...
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eccccccccccccchhhhcccccEEEeecc
Confidence 666665544444444555666666666544
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=3.2e-09 Score=80.82 Aligned_cols=60 Identities=42% Similarity=0.519 Sum_probs=48.2
Q ss_pred cCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcc
Q 004747 584 QGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 643 (732)
Q Consensus 584 ~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 643 (732)
++|++|++++|+++...+. +.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888755545 77788888888888888877788888888888888888875
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=2.5e-09 Score=99.22 Aligned_cols=126 Identities=27% Similarity=0.371 Sum_probs=39.1
Q ss_pred cCCCCCCEEeccCccCCCccccccC-CCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCc
Q 004747 345 TELKSLQALFLSNNLLIGEIPARIG-NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK 423 (732)
Q Consensus 345 ~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 423 (732)
.+..++++|+|.+|.++. + +.++ .+.+|+.|++++|.++.. . .+..++.|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l-~-------------------------~l~~L~~L~ 67 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL-E-------------------------GLPGLPRLK 67 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T-------------------------T----TT--
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc-c-------------------------CccChhhhh
Confidence 334456777777777663 2 2344 356667777777766521 1 134456666
Q ss_pred EEEcccCceeeeccccC-CCCCCCCEEEccCCcccccc-hhhhhcCCCCCEEEcccCCCcccc---chhhhcCCCCCEEE
Q 004747 424 ILDISNNQISGEIPLTL-AGLKSLEIVDFSSNNLSGSL-NDAITKWTNLKYFSIARNKLSGNL---PNWLFSFQAIQMMD 498 (732)
Q Consensus 424 ~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~---p~~~~~~~~L~~L~ 498 (732)
.|++++|.++.. ...+ ..+++|++|++++|+|...- -..+..+++|+.|++.+|+++..- ...+..+|+|+.||
T Consensus 68 ~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 68 TLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred hcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 666666666632 2222 24566777777777665321 134556777777777777776331 23456677888776
Q ss_pred c
Q 004747 499 F 499 (732)
Q Consensus 499 l 499 (732)
-
T Consensus 147 ~ 147 (175)
T PF14580_consen 147 G 147 (175)
T ss_dssp T
T ss_pred C
Confidence 4
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=5.5e-09 Score=96.92 Aligned_cols=123 Identities=30% Similarity=0.336 Sum_probs=40.8
Q ss_pred CccEEeCCCCcccCCCccccc-CCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeec
Q 004747 325 GLVLLDLSHNRFSGEIPLKIT-ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV 403 (732)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 403 (732)
.+++|+|++|.++ .+. .++ .+.+|+.|++++|.++. + +.+..++.|+.|++++|+++. +...+.
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~---------- 84 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLD---------- 84 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHH----------
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchH----------
Confidence 6899999999998 343 455 57899999999999984 3 357889999999999999984 332221
Q ss_pred ccccccccCcccccCCCCCcEEEcccCceeeec-cccCCCCCCCCEEEccCCcccccc---hhhhhcCCCCCEEEc
Q 004747 404 NNNNLSGEIQPELDALDSLKILDISNNQISGEI-PLTLAGLKSLEIVDFSSNNLSGSL---NDAITKWTNLKYFSI 475 (732)
Q Consensus 404 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L 475 (732)
..+++|+.|++++|++...- -..+..+++|++|++.+|.+.... ...+..+|+|+.||-
T Consensus 85 -------------~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 85 -------------KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -------------HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred -------------HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 12344555555555544211 123445566666666666665321 123456777777764
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.71 E-value=1.5e-09 Score=117.75 Aligned_cols=241 Identities=27% Similarity=0.297 Sum_probs=124.6
Q ss_pred cccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccE
Q 004747 249 MSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVL 328 (732)
Q Consensus 249 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~ 328 (732)
..++.+.+..|.+.. +-..+..+++|+.|++.+|++... ...+..+++|++|++++|.|+. +..+..++.|+.
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~-----i~~l~~l~~L~~ 144 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITK-----LEGLSTLTLLKE 144 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccc-----ccchhhccchhh
Confidence 344444455554442 122244455566666666655532 1124555666666666666652 222222224666
Q ss_pred EeCCCCcccCCCcccccCCCCCCEEeccCccCCCccc-cccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccccc
Q 004747 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP-ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN 407 (732)
Q Consensus 329 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 407 (732)
|++++|.++. + ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+.....+..+.+..|.
T Consensus 145 L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 6666666652 2 234445666666666666653322 1 35566666666666665421 222333344444555555
Q ss_pred ccccCcccccCCC--CCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccc--
Q 004747 408 LSGEIQPELDALD--SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN-- 483 (732)
Q Consensus 408 l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-- 483 (732)
++..-+. ..+. +|+.+++++|.+. ..+..+..+..+..+++.+|++...- .+.....+..+....|++...
T Consensus 220 i~~~~~l--~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 220 ISKLEGL--NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred ceeccCc--ccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhh
Confidence 5432211 1122 3677777777776 33345566677777777777776432 233445566666666665422
Q ss_pred -cchh-hhcCCCCCEEEccCCcCcc
Q 004747 484 -LPNW-LFSFQAIQMMDFSTNKFMG 506 (732)
Q Consensus 484 -~p~~-~~~~~~L~~L~ls~N~l~~ 506 (732)
.... ....+.++.+.+..|....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhccccccccccccccccccCcccc
Confidence 1111 3445566666666666643
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=2.5e-08 Score=75.91 Aligned_cols=59 Identities=36% Similarity=0.592 Sum_probs=34.9
Q ss_pred CCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCC
Q 004747 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479 (732)
Q Consensus 421 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 479 (732)
+|++|++++|+++...+..|.++++|++|++++|+++...+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666664444555666666666666666665555555666666666666554
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.59 E-value=6.3e-08 Score=112.35 Aligned_cols=103 Identities=25% Similarity=0.295 Sum_probs=65.3
Q ss_pred CCCEEEeeccc--CCCcccc---ccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEE
Q 004747 205 SLKHLDLEKNN--LTGNVHD---FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279 (732)
Q Consensus 205 ~L~~L~Ls~n~--l~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 279 (732)
+|+.|-+..|. +...... .++.|++|||++|.=-+.+|..++.+-+|++|++++..+. .+|..++++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 55555555553 2222221 2334556666655545567777777777888888777776 5777777777788887
Q ss_pred eccCCCCCcCccccccCcCCcEEEccCCC
Q 004747 280 LSHNHLNYEISPRLVFFEKLLLLDLSFND 308 (732)
Q Consensus 280 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 308 (732)
+..+.-...+|.....+++|++|.+....
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccc
Confidence 77765544555555567777777776554
No 43
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.49 E-value=1.8e-07 Score=65.00 Aligned_cols=38 Identities=39% Similarity=0.838 Sum_probs=28.7
Q ss_pred HHhHHHHHHHHhcCCC-CCCCCCCCC-C--CCCCCccceeec
Q 004747 41 LEDKASLLLFKSLVQD-PTQKLSSWV-G--SNCTNWTGVACN 78 (732)
Q Consensus 41 ~~~~~~l~~~k~~~~~-~~~~l~~w~-~--~~~c~w~gv~c~ 78 (732)
.+|++||++||+++.. |.+.+.+|. . .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 4688899999999994 668899993 3 799999999995
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.1e-09 Score=102.40 Aligned_cols=66 Identities=24% Similarity=0.245 Sum_probs=30.0
Q ss_pred cCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcc-cccc-cCcccCCCCCCCEEEeecccCCC
Q 004747 151 MKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNS-FCGE-IPESLYYLKSLKHLDLEKNNLTG 218 (732)
Q Consensus 151 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~l~~ 218 (732)
..|.+|+.|.|.++ .+...+-..+++- .+|+.|+++.+. ++.. .---+.+++.|..|+|+.+.+..
T Consensus 207 s~C~kLk~lSlEg~-~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGL-RLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT 274 (419)
T ss_pred HHHHhhhhcccccc-ccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc
Confidence 34444444444444 3333333333333 445555554442 1110 00124566667777777666543
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=5.8e-09 Score=111.80 Aligned_cols=179 Identities=28% Similarity=0.324 Sum_probs=103.0
Q ss_pred cccccCCCCCcEEEcccCceeeeccccCCCC-CCCCEEEccCCcccccchhhh----h------cCCCCCEEEcccCCCc
Q 004747 413 QPELDALDSLKILDISNNQISGEIPLTLAGL-KSLEIVDFSSNNLSGSLNDAI----T------KWTNLKYFSIARNKLS 481 (732)
Q Consensus 413 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~~----~------~l~~L~~L~L~~N~l~ 481 (732)
|-.+..+.+|++|.+.++.+... ..+..+ ..|+.|.- .|.+. .+...| + .+..|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~-Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLD-ALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHH-HHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 45567788999999999887631 111111 22333322 12221 010111 0 1345666777777776
Q ss_pred cccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhccc
Q 004747 482 GNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFS 561 (732)
Q Consensus 482 ~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 561 (732)
.+...+.-++.++.|||++|+++.. ..+..++.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v----------------------------------------------~~Lr~l~~ 210 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV----------------------------------------------DNLRRLPK 210 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh----------------------------------------------HHHHhccc
Confidence 4556666677777777777776521 11122667
Q ss_pred ceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCC-cCCCCCCCCCEEEccc
Q 004747 562 AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP-GNISSLQELTLLNLSY 640 (732)
Q Consensus 562 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~ls~ 640 (732)
|+.|||++|.+. .+|.--..--.|+.|++++|.++ ..-++.++++|+.||+|+|-|.+.-- .-+..+.+|..|+|.+
T Consensus 211 LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 211 LKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred ccccccccchhc-cccccchhhhhheeeeecccHHH-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 777777777776 55532111123777777777776 45557777777777777777765321 1234456677777777
Q ss_pred Ccce
Q 004747 641 NSFS 644 (732)
Q Consensus 641 N~l~ 644 (732)
|++.
T Consensus 289 NPl~ 292 (1096)
T KOG1859|consen 289 NPLC 292 (1096)
T ss_pred Cccc
Confidence 7774
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.1e-08 Score=98.61 Aligned_cols=204 Identities=20% Similarity=0.152 Sum_probs=136.6
Q ss_pred cEEEEEcCCCCCccc-ccccccCC-CCCCEEECCCCCCCCc-ccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEE
Q 004747 83 HVVSINLTDTSLSGQ-VHPRLCKL-SFLEFLVLSSNAFTGR-ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159 (732)
Q Consensus 83 ~v~~L~L~~~~l~~~-~~~~l~~l-~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 159 (732)
.|..+.+........ +.+.+.-+ +.|++||||+..++.. +...++.+.+|+.|.|.++++.+.+...+++-.+|+.|
T Consensus 160 gV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l 239 (419)
T KOG2120|consen 160 GVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL 239 (419)
T ss_pred CeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence 577777764433322 22222222 4699999999888744 34456789999999999999999988999999999999
Q ss_pred eCCCCCCCCCcCCch-hhhcccCCcEEEeeCcccccccCccc-C-CCCCCCEEEeecccCCCccccccccccEEECCCCc
Q 004747 160 ILKGNPELGGVFPGW-VGNFSMNLEKLDFSFNSFCGEIPESL-Y-YLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNR 236 (732)
Q Consensus 160 ~Ls~n~~~~~~~p~~-~~~l~~~L~~L~Ls~n~l~~~~p~~l-~-~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~ 236 (732)
+|+.+..++..--.. +.++ +.|..|+++.|.+........ . --++|+.|+|++..-. -
T Consensus 240 nlsm~sG~t~n~~~ll~~sc-s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn------------------l 300 (419)
T KOG2120|consen 240 NLSMCSGFTENALQLLLSSC-SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN------------------L 300 (419)
T ss_pred ccccccccchhHHHHHHHhh-hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh------------------h
Confidence 999885443322222 3344 889999999998765432221 1 1256777777775321 0
Q ss_pred CccccCchhhcccccCeeeCCCCc-cccccchhhhccCCCCEEEeccCCCCCcCcc---ccccCcCCcEEEccCC
Q 004747 237 FSGTLPCFAASAMSLTVLKLDNNS-VVGGIPTCIASLQALTHLNLSHNHLNYEISP---RLVFFEKLLLLDLSFN 307 (732)
Q Consensus 237 l~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n 307 (732)
....+......+++|.+|||++|. ++......|.+++.|++|.++.|.. .+|. .+...+.|.+||+.++
T Consensus 301 ~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 301 QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 011222334578888999998875 4444445667888999999988853 3444 3556788999988755
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=2.4e-08 Score=107.19 Aligned_cols=127 Identities=26% Similarity=0.336 Sum_probs=87.7
Q ss_pred CCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCC
Q 004747 444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSD 523 (732)
Q Consensus 444 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~ 523 (732)
..|...+.+.|.+. .+..++.-++.|+.|+|++|+++..- .+..++.|+.||+++|.+. .+|.-- .
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~--~-------- 229 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLS--M-------- 229 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccc--h--------
Confidence 35667777778776 55566777778888888888876332 6777888888888888775 233210 0
Q ss_pred CCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCC--
Q 004747 524 IGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP-- 601 (732)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip-- 601 (732)
..+. |+.|.+++|.++ . -..+.+|++|+.||+|+|-|.+--.
T Consensus 230 ---------------------------------~gc~-L~~L~lrnN~l~-t-L~gie~LksL~~LDlsyNll~~hseL~ 273 (1096)
T KOG1859|consen 230 ---------------------------------VGCK-LQLLNLRNNALT-T-LRGIENLKSLYGLDLSYNLLSEHSELE 273 (1096)
T ss_pred ---------------------------------hhhh-heeeeecccHHH-h-hhhHHhhhhhhccchhHhhhhcchhhh
Confidence 0022 777888888886 2 2457788888888888888875322
Q ss_pred cccCccCCcEEeCCCCcCc
Q 004747 602 GLYRLRSLRALDLSHNSLT 620 (732)
Q Consensus 602 ~l~~l~~L~~LdLs~N~l~ 620 (732)
.++.+..|+.|+|.+|.+-
T Consensus 274 pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 274 PLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHHHHHHHHHHhhcCCccc
Confidence 2667788888888888874
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.16 E-value=1e-07 Score=81.56 Aligned_cols=64 Identities=28% Similarity=0.398 Sum_probs=39.6
Q ss_pred cccceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCC
Q 004747 559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP 624 (732)
Q Consensus 559 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip 624 (732)
++.++.|+|++|.++ .+|.++..++.|+.||++.|.+......+..+.++-.||..+|.+. +||
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA-EID 139 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccc-cCc
Confidence 334556666667666 5666666677777777777776632222555666666666666665 444
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=1.1e-06 Score=84.01 Aligned_cols=69 Identities=22% Similarity=0.105 Sum_probs=33.2
Q ss_pred ccCCCCEEEeccCCCCCcC----ccccccCcCCcEEEccCCCCCCCCchhhhh---cCCCCCccEEeCCCCcccCC
Q 004747 271 SLQALTHLNLSHNHLNYEI----SPRLVFFEKLLLLDLSFNDLSGPLPSKIAQ---TTEKAGLVLLDLSHNRFSGE 339 (732)
Q Consensus 271 ~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~---l~~~~~L~~L~Ls~n~l~~~ 339 (732)
.+.+|+.||+++|.++-.- ...+...+.|+.|.+.+|-++..-...+.. -...++|..|-..+|...+.
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 3455566666655554221 122333445666666666555332222111 11234667777777766543
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.08 E-value=5.1e-07 Score=86.24 Aligned_cols=62 Identities=27% Similarity=0.265 Sum_probs=30.0
Q ss_pred CccEEeCCCCcccCC----CcccccCCCCCCEEeccCccCCCcccccc------CCCCCCCEEEccCCcCcc
Q 004747 325 GLVLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIGEIPARI------GNLTYLQVIDLSHNMLSG 386 (732)
Q Consensus 325 ~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l------~~l~~L~~L~Ls~n~l~~ 386 (732)
+|+.||+..|.++-. +...+..++.|+.|.+.+|-++..-...+ ...++|..|-..+|...+
T Consensus 215 ~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 215 SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 555555555555421 12233444556666666665553322211 123555666666665543
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=8.3e-07 Score=85.95 Aligned_cols=40 Identities=30% Similarity=0.403 Sum_probs=24.2
Q ss_pred cCCcEEEeeCccccc--ccCcccCCCCCCCEEEeecccCCCc
Q 004747 180 MNLEKLDFSFNSFCG--EIPESLYYLKSLKHLDLEKNNLTGN 219 (732)
Q Consensus 180 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~ 219 (732)
+.++.+||.+|.++. .+-..+.++|.|+.|+++.|.+...
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~ 112 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD 112 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc
Confidence 556666666666552 3333456677777777777776543
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=2.5e-06 Score=82.74 Aligned_cols=83 Identities=17% Similarity=0.247 Sum_probs=52.9
Q ss_pred CCCCCcEEEcccCceeeecc-ccCCCCCCCCEEEccCCccccc-chhhhhcCCCCCEEEcccCCCccccch------hhh
Q 004747 418 ALDSLKILDISNNQISGEIP-LTLAGLKSLEIVDFSSNNLSGS-LNDAITKWTNLKYFSIARNKLSGNLPN------WLF 489 (732)
Q Consensus 418 ~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~------~~~ 489 (732)
-++++..+.+..|.+...-. ..+...+.+..|+|+.|+|..- --+.+..+++|..|.+++|++...+.. -++
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 35677777788887654322 3345566777888888888632 124567788888888888887644321 235
Q ss_pred cCCCCCEEEcc
Q 004747 490 SFQAIQMMDFS 500 (732)
Q Consensus 490 ~~~~L~~L~ls 500 (732)
.+++++.|+=+
T Consensus 277 RL~~v~vLNGs 287 (418)
T KOG2982|consen 277 RLTKVQVLNGS 287 (418)
T ss_pred eccceEEecCc
Confidence 56677766533
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=5.5e-06 Score=57.63 Aligned_cols=35 Identities=40% Similarity=0.580 Sum_probs=15.9
Q ss_pred CCceeecccccceecCCc-ccCccCCcEEeCCCCcCc
Q 004747 585 GLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLT 620 (732)
Q Consensus 585 ~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~ 620 (732)
+|++|++++|+|+ .+|. ++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3445555555554 2333 455555555555555544
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=7.6e-07 Score=76.34 Aligned_cols=59 Identities=29% Similarity=0.496 Sum_probs=25.9
Q ss_pred CccEEeCCCCcccCCCccccc-CCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCc
Q 004747 325 GLVLLDLSHNRFSGEIPLKIT-ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385 (732)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 385 (732)
.|+..++++|.+. .+|..|. ..+.++.|++++|.++ .+|..+..++.|+.++++.|.+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence 4444444444444 2333222 2234444444444444 34444444444444444444444
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1e-05 Score=56.27 Aligned_cols=39 Identities=44% Similarity=0.669 Sum_probs=33.1
Q ss_pred cCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceee
Q 004747 607 RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF 646 (732)
Q Consensus 607 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 646 (732)
++|++|++++|+|+ .+|..+++|++|++|++++|+++..
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 57999999999999 5676799999999999999999854
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.55 E-value=0.00021 Score=74.89 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=52.5
Q ss_pred ccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccC-CCccccchhhhcCCCC
Q 004747 416 LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN-KLSGNLPNWLFSFQAI 494 (732)
Q Consensus 416 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~~~L 494 (732)
+..+..++.|++++|.++ .+|. -..+|++|+++++.--..+|+.+ .++|++|++++| .+. .+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence 445788999999999887 5562 23469999998854434566554 258999999988 443 4553 47
Q ss_pred CEEEccCCcC
Q 004747 495 QMMDFSTNKF 504 (732)
Q Consensus 495 ~~L~ls~N~l 504 (732)
+.|+++.+..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 7777766553
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=4.7e-05 Score=86.50 Aligned_cols=138 Identities=20% Similarity=0.236 Sum_probs=78.6
Q ss_pred CCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccc-cCcccCCCCCCCEEEeecccCCCccccccccccEEEC
Q 004747 154 RNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGE-IPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNL 232 (732)
Q Consensus 154 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L 232 (732)
.+|++||+++...+....|..++.+.++|++|.+++-.+... .-.-..++++|..||+|+.+++.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-------------- 187 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-------------- 187 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC--------------
Confidence 467777777766665556666666667777777766554321 11223456666666666665542
Q ss_pred CCCcCccccCchhhcccccCeeeCCCCcccc-ccchhhhccCCCCEEEeccCCCCCcC--c----cccccCcCCcEEEcc
Q 004747 233 GSNRFSGTLPCFAASAMSLTVLKLDNNSVVG-GIPTCIASLQALTHLNLSHNHLNYEI--S----PRLVFFEKLLLLDLS 305 (732)
Q Consensus 233 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~Ls 305 (732)
. ..++++++|++|.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.|
T Consensus 188 -------l--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 188 -------L--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred -------c--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 1 456667777777766655442 11224556777777777766543221 0 111236677777777
Q ss_pred CCCCCCCCc
Q 004747 306 FNDLSGPLP 314 (732)
Q Consensus 306 ~n~l~~~~p 314 (732)
++.+.+.+-
T Consensus 259 gTdi~~~~l 267 (699)
T KOG3665|consen 259 GTDINEEIL 267 (699)
T ss_pred CcchhHHHH
Confidence 766664433
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.34 E-value=0.00069 Score=71.06 Aligned_cols=136 Identities=16% Similarity=0.191 Sum_probs=71.9
Q ss_pred ccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccC
Q 004747 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN 181 (732)
Q Consensus 102 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~ 181 (732)
+..+.+++.|++++|.++ .+|. -..+|++|+++++.--..+|..+. ++|++|++++|..+. .+| .+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP-------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP-------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc-------cc
Confidence 344566777777777665 3341 123577777776443335555442 467777777773322 233 45
Q ss_pred CcEEEeeCcccccccCcccCCC-CCCCEEEeeccc-CC-Ccccccc-ccccEEECCCCcCccccCchhhcccccCeeeCC
Q 004747 182 LEKLDFSFNSFCGEIPESLYYL-KSLKHLDLEKNN-LT-GNVHDFY-QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLD 257 (732)
Q Consensus 182 L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~-l~-~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 257 (732)
|+.|+++.+.... +..+ ++|+.|.+.+++ .. ...+..+ .+|++|++++|... ..|..+. .+|+.|+++
T Consensus 114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 114 VRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred cceEEeCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 6777776554321 1222 245566664322 11 1122233 34788888777654 2333222 467788877
Q ss_pred CC
Q 004747 258 NN 259 (732)
Q Consensus 258 ~n 259 (732)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 65
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.00014 Score=82.70 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=72.4
Q ss_pred cEEEEEcCCCCCcc-cccccc-cCCCCCCEEECCCCCCCCc-ccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEE
Q 004747 83 HVVSINLTDTSLSG-QVHPRL-CKLSFLEFLVLSSNAFTGR-ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159 (732)
Q Consensus 83 ~v~~L~L~~~~l~~-~~~~~l-~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 159 (732)
.+++||++|...-. .-+..+ ..||.|+.|.+++-.+... ......++++|+.||+|+.+++.. ..++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 56677776654321 112223 3477777777777665432 333455677788888887777744 556777777777
Q ss_pred eCCCCCCCCCcCCchhhhcccCCcEEEeeCccccccc--C----cccCCCCCCCEEEeecccCC
Q 004747 160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEI--P----ESLYYLKSLKHLDLEKNNLT 217 (732)
Q Consensus 160 ~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~Ls~n~l~ 217 (732)
.+.+=.+.....-..+.++ ++|++||+|........ . +.-..+|+|+.||.|++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 7765433222222344555 66666666665443211 0 11123555666665555444
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.20 E-value=0.00065 Score=62.86 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=19.4
Q ss_pred ccCCCCCcEEEcccCceeeecc---ccCCCCCCCCEEEccC
Q 004747 416 LDALDSLKILDISNNQISGEIP---LTLAGLKSLEIVDFSS 453 (732)
Q Consensus 416 ~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls~ 453 (732)
+..++.|++|.+-+|+.+..-- ..+..+++|++||++.
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 3445566666666665542211 1234556666666654
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.06 E-value=0.0022 Score=56.97 Aligned_cols=105 Identities=19% Similarity=0.223 Sum_probs=34.9
Q ss_pred cccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCC
Q 004747 343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSL 422 (732)
Q Consensus 343 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 422 (732)
.|..+++|+.+.+.+ .+.......|.++++|+.+++.++ +.......|.++..++.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344455555555543 233222334455555555555443 3322223333333444444432 2221222233344444
Q ss_pred cEEEcccCceeeeccccCCCCCCCCEEEcc
Q 004747 423 KILDISNNQISGEIPLTLAGLKSLEIVDFS 452 (732)
Q Consensus 423 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 452 (732)
+.+++..+ +.......|.++ +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 44444433 332223334443 44444444
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.04 E-value=0.001 Score=61.61 Aligned_cols=104 Identities=28% Similarity=0.226 Sum_probs=48.6
Q ss_pred CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747 107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186 (732)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~ 186 (732)
+...+||++|.+.. .+.|..++.|..|.|++|+|+.+.|.--..+++|+.|.|.+|.+-.-.--.-+..+ +.|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~-p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASC-PKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccC-Cccceee
Confidence 44555666665532 12355566666666666666655444333445555555555532110001112222 4455555
Q ss_pred eeCccccccc---CcccCCCCCCCEEEeec
Q 004747 187 FSFNSFCGEI---PESLYYLKSLKHLDLEK 213 (732)
Q Consensus 187 Ls~n~l~~~~---p~~l~~l~~L~~L~Ls~ 213 (732)
+-+|.++..- --.+..+++|+.||+..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 5555443210 11244556666666554
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.95 E-value=0.0024 Score=56.72 Aligned_cols=106 Identities=18% Similarity=0.210 Sum_probs=49.9
Q ss_pred ccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCC
Q 004747 367 RIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446 (732)
Q Consensus 367 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 446 (732)
.|.++++|+.+.+.. .+.......|.++.+++.+.+.++ +.......|.++++++.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 466677778777764 454444555666666777766654 4444444566666666666654 3332334455566666
Q ss_pred CEEEccCCcccccchhhhhcCCCCCEEEccc
Q 004747 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477 (732)
Q Consensus 447 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 477 (732)
+.+++..+ +.......|.++ +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 66666544 433334445555 666666554
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.61 E-value=0.00015 Score=74.09 Aligned_cols=63 Identities=22% Similarity=0.164 Sum_probs=32.0
Q ss_pred CCCCCCEEEccCCcCcccc-----CccccCCcCcceeeccccccc-ccCcccccCCCCCcEEEcccCce
Q 004747 370 NLTYLQVIDLSHNMLSGSI-----PLNIVGCFQLLALIVNNNNLS-GEIQPELDALDSLKILDISNNQI 432 (732)
Q Consensus 370 ~l~~L~~L~Ls~n~l~~~~-----p~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l 432 (732)
+++.|+.+.++++...... ...-.+...++.+.+++++.. ...-..+..+++|+.+++.+++-
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 4455555555555432111 111233445666666666543 22333456677777777777653
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.59 E-value=0.0012 Score=63.81 Aligned_cols=39 Identities=41% Similarity=0.460 Sum_probs=18.0
Q ss_pred ccCCCCCCEEECCCC--CCCCCCCccccCCCCCCEEeCCCC
Q 004747 126 FGGLSGLKTLDLSYN--KFVGVVPDAIMKLRNLRELILKGN 164 (732)
Q Consensus 126 ~~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~n 164 (732)
|..+++|+.|++|.| ++++..+.-...+++|++|++++|
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 334455555555555 333333333333455555555555
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.40 E-value=0.00023 Score=72.73 Aligned_cols=86 Identities=21% Similarity=0.213 Sum_probs=42.8
Q ss_pred CCCCEEECCCCCCCCc--ccccccCCCCCCEEECCCCC-CCCCCCcccc-CCCCCCEEeCCCCCCCCCcCCchhhhcccC
Q 004747 106 SFLEFLVLSSNAFTGR--ISTCFGGLSGLKTLDLSYNK-FVGVVPDAIM-KLRNLRELILKGNPELGGVFPGWVGNFSMN 181 (732)
Q Consensus 106 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~-~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~ 181 (732)
..|+.|.+++++=.+. +-..-.+++++++|++.++. ++...-..++ .+++|++|+|..+..++...-..++.-+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3566666666543322 22223456677777666664 2222112222 466677777666543333322223333356
Q ss_pred CcEEEeeCcc
Q 004747 182 LEKLDFSFNS 191 (732)
Q Consensus 182 L~~L~Ls~n~ 191 (732)
|++|+++++.
T Consensus 218 L~~lNlSwc~ 227 (483)
T KOG4341|consen 218 LKYLNLSWCP 227 (483)
T ss_pred HHHhhhccCc
Confidence 6666666654
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.18 E-value=0.0016 Score=63.05 Aligned_cols=39 Identities=28% Similarity=0.263 Sum_probs=17.8
Q ss_pred cCCCCEEEeccC--CCCCcCccccccCcCCcEEEccCCCCC
Q 004747 272 LQALTHLNLSHN--HLNYEISPRLVFFEKLLLLDLSFNDLS 310 (732)
Q Consensus 272 l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 310 (732)
+++|+.|.++.| ++.+.++.-...+++|++++++.|++.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 445555555555 333333333333445555555555443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.00058 Score=66.11 Aligned_cols=98 Identities=16% Similarity=0.169 Sum_probs=72.5
Q ss_pred CcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccc-hhhhhcCCCCCEEEc
Q 004747 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL-NDAITKWTNLKYFSI 475 (732)
Q Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L 475 (732)
+.+.|++-++.+++. .....++.|++|.|+-|+|+..- .+..|++|++|+|..|.|.+.- -..+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 445566666666543 22457889999999999998553 4678999999999999987432 134578999999999
Q ss_pred ccCCCccccch-----hhhcCCCCCEEE
Q 004747 476 ARNKLSGNLPN-----WLFSFQAIQMMD 498 (732)
Q Consensus 476 ~~N~l~~~~p~-----~~~~~~~L~~L~ 498 (732)
..|+-.|.-+. .+..+++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 99998877653 456688888886
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.83 E-value=0.0031 Score=36.41 Aligned_cols=19 Identities=58% Similarity=0.758 Sum_probs=10.0
Q ss_pred CcEEeCCCCcCcccCCcCCC
Q 004747 609 LRALDLSHNSLTGQIPGNIS 628 (732)
Q Consensus 609 L~~LdLs~N~l~~~ip~~l~ 628 (732)
|++|||++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444444
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.00083 Score=65.07 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=72.0
Q ss_pred CCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCcccc-chhhhcCCCCCE
Q 004747 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL-PNWLFSFQAIQM 496 (732)
Q Consensus 418 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~~~~L~~ 496 (732)
.+.+.++|+..+|.++++ .....|+.|++|.|+-|+|+.. ..+..|++|++|+|..|.|...- -..+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 356788999999999854 3456899999999999999855 34788999999999999987322 245788999999
Q ss_pred EEccCCcCcccCCcc
Q 004747 497 MDFSTNKFMGFIPDG 511 (732)
Q Consensus 497 L~ls~N~l~~~~p~~ 511 (732)
|.|..|+=.|.-+..
T Consensus 93 LWL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQN 107 (388)
T ss_pred HhhccCCcccccchh
Confidence 999999877655443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.96 E-value=0.01 Score=34.22 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=12.0
Q ss_pred ceEEEccCCcccccCCccccc
Q 004747 562 AVGMDLSDNLLHGTIPKGLFQ 582 (732)
Q Consensus 562 L~~LdLs~N~l~g~ip~~l~~ 582 (732)
|++||+++|+++ .+|.++++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 456666666666 56655443
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.55 E-value=0.0083 Score=66.84 Aligned_cols=111 Identities=25% Similarity=0.111 Sum_probs=49.4
Q ss_pred ccccCeeeCCCCccccc--cchhhhccCCCCEEEeccC-CCCCcC----ccccccCcCCcEEEccCCC-CCCCCchhhhh
Q 004747 248 AMSLTVLKLDNNSVVGG--IPTCIASLQALTHLNLSHN-HLNYEI----SPRLVFFEKLLLLDLSFND-LSGPLPSKIAQ 319 (732)
Q Consensus 248 ~~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n-~l~~~~----~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~ 319 (732)
++.|+.|.+.++.-... .-.....++.|++|+++++ ...... ......+++|+.|+++++. ++...-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45666666665533222 2233445666777776652 111111 1123334556666666555 33222222222
Q ss_pred cCCCCCccEEeCCCCc-ccCC-CcccccCCCCCCEEeccCccC
Q 004747 320 TTEKAGLVLLDLSHNR-FSGE-IPLKITELKSLQALFLSNNLL 360 (732)
Q Consensus 320 l~~~~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~l 360 (732)
. .++|+.|.+.++. ++.. +-.....++.|++|+++.+..
T Consensus 267 ~--c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 R--CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred h--CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 1 2255555555444 3321 111223355566666665543
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.98 E-value=0.0068 Score=67.52 Aligned_cols=186 Identities=24% Similarity=0.105 Sum_probs=99.6
Q ss_pred CCCCCCEEECCCCCCCCc--ccccccCCCCCCEEECCCC-CCCCCCC----ccccCCCCCCEEeCCCCCCCCCcCCchhh
Q 004747 104 KLSFLEFLVLSSNAFTGR--ISTCFGGLSGLKTLDLSYN-KFVGVVP----DAIMKLRNLRELILKGNPELGGVFPGWVG 176 (732)
Q Consensus 104 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n-~l~~~~p----~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~ 176 (732)
..+.|+.|.+.++.-... .-.....++.|+.|+++++ ......+ .....+++|+.|+++++..++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367777777776633222 3344567788888888763 2211111 22345678888888887544444334444
Q ss_pred hcccCCcEEEeeCcc-cccccC-cccCCCCCCCEEEeecccCCCc--c---ccccccccEEECCCCcCccccCchhhccc
Q 004747 177 NFSMNLEKLDFSFNS-FCGEIP-ESLYYLKSLKHLDLEKNNLTGN--V---HDFYQSLLVLNLGSNRFSGTLPCFAASAM 249 (732)
Q Consensus 177 ~l~~~L~~L~Ls~n~-l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~--~---~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 249 (732)
..+++|++|.+.++. ++...- .....+++|++|+++++..... . ....++++.|.+... ..+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~----------~~c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL----------NGCP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc----------CCCc
Confidence 434688888877776 443221 2234677888888887754311 0 111233443332211 1144
Q ss_pred ccCeeeCCCCccc---cccchhhhccCCCCEEEeccCCCCCcC-ccccccCcCC
Q 004747 250 SLTVLKLDNNSVV---GGIPTCIASLQALTHLNLSHNHLNYEI-SPRLVFFEKL 299 (732)
Q Consensus 250 ~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L 299 (732)
.++.+.+.+.... ......+..+++++.+.+..+...... ...+.+++.|
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 5555555544331 122234567788888888877633222 2344555555
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.32 E-value=0.00085 Score=73.14 Aligned_cols=62 Identities=31% Similarity=0.299 Sum_probs=31.4
Q ss_pred cCCCCCCCEEEeecccCCCcccccc--------ccccEEECCCCcCccc----cCchhhcccccCeeeCCCCcc
Q 004747 200 LYYLKSLKHLDLEKNNLTGNVHDFY--------QSLLVLNLGSNRFSGT----LPCFAASAMSLTVLKLDNNSV 261 (732)
Q Consensus 200 l~~l~~L~~L~Ls~n~l~~~~~~~~--------~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l 261 (732)
+...+.|+.|++++|.+.+.....+ ..+++|++..|.+++. +...+.....++.++++.|.+
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 4455566666666666653221111 1244455555555432 234444456666666666665
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.12 E-value=0.0017 Score=70.79 Aligned_cols=41 Identities=34% Similarity=0.307 Sum_probs=23.1
Q ss_pred ccCccCCcEEeCCCCcCcccCCcCC-----CCCCCCCEEEcccCcce
Q 004747 603 LYRLRSLRALDLSHNSLTGQIPGNI-----SSLQELTLLNLSYNSFS 644 (732)
Q Consensus 603 l~~l~~L~~LdLs~N~l~~~ip~~l-----~~l~~L~~L~ls~N~l~ 644 (732)
......++.+++++|......+..+ .+. .++.++++.|+++
T Consensus 400 ~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~ 445 (478)
T KOG4308|consen 400 LASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPIT 445 (478)
T ss_pred hhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhh
Confidence 3345667777777776654433322 123 6666777766654
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.30 E-value=0.014 Score=55.27 Aligned_cols=84 Identities=21% Similarity=0.146 Sum_probs=71.1
Q ss_pred hcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEE
Q 004747 558 QLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLL 636 (732)
Q Consensus 558 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L 636 (732)
.....+.||++.|++. ..-..+..++.|..||++.|++. ..|. ++....+..+++..|..+ ..|.++...+.++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3566788999999987 45556777888999999999997 5555 888999999999999988 778899999999999
Q ss_pred EcccCcce
Q 004747 637 NLSYNSFS 644 (732)
Q Consensus 637 ~ls~N~l~ 644 (732)
++-.|.|.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99999874
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.93 E-value=0.12 Score=27.62 Aligned_cols=11 Identities=73% Similarity=0.999 Sum_probs=3.4
Q ss_pred CcEEeCCCCcC
Q 004747 609 LRALDLSHNSL 619 (732)
Q Consensus 609 L~~LdLs~N~l 619 (732)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.27 E-value=0.02 Score=53.29 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=44.5
Q ss_pred CCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcc-cccccCcccCCCCCCCEEE
Q 004747 132 LKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNS-FCGEIPESLYYLKSLKHLD 210 (732)
Q Consensus 132 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~ 210 (732)
++.+|-++..|..+--..+.+++.++.|.+.++..+...--..++...++|+.|++++|. |+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455555555555444444555555666666555433322222233344677777777664 4443344566677777776
Q ss_pred eec
Q 004747 211 LEK 213 (732)
Q Consensus 211 Ls~ 213 (732)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 654
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.91 E-value=0.0076 Score=57.07 Aligned_cols=82 Identities=16% Similarity=0.054 Sum_probs=61.6
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (732)
Q Consensus 81 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (732)
..+|+.||++.+.+.. +-..+..++.+..||++.|++. -.|.+++.+..++.+++..|..+ ..|.+++..+++++++
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 4578888888877652 2345666777888888888776 56777888888888888877776 6788888888888888
Q ss_pred CCCCC
Q 004747 161 LKGNP 165 (732)
Q Consensus 161 Ls~n~ 165 (732)
+.+|+
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 88774
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.44 E-value=0.33 Score=29.13 Aligned_cols=16 Identities=50% Similarity=0.690 Sum_probs=9.7
Q ss_pred cCCcEEeCCCCcCccc
Q 004747 607 RSLRALDLSHNSLTGQ 622 (732)
Q Consensus 607 ~~L~~LdLs~N~l~~~ 622 (732)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666633
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.44 E-value=0.33 Score=29.13 Aligned_cols=16 Identities=50% Similarity=0.690 Sum_probs=9.7
Q ss_pred cCCcEEeCCCCcCccc
Q 004747 607 RSLRALDLSHNSLTGQ 622 (732)
Q Consensus 607 ~~L~~LdLs~N~l~~~ 622 (732)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666633
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.45 E-value=0.64 Score=27.84 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=10.9
Q ss_pred CCCCEEECCCCCCCCCCC
Q 004747 130 SGLKTLDLSYNKFVGVVP 147 (732)
Q Consensus 130 ~~L~~L~Ls~n~l~~~~p 147 (732)
++|++|+|++|+|....+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666664433
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.45 E-value=0.64 Score=27.84 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=10.9
Q ss_pred CCCCEEECCCCCCCCCCC
Q 004747 130 SGLKTLDLSYNKFVGVVP 147 (732)
Q Consensus 130 ~~L~~L~Ls~n~l~~~~p 147 (732)
++|++|+|++|+|....+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666664433
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.18 E-value=0.55 Score=27.52 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=6.1
Q ss_pred CCCCEEEccCCcccc
Q 004747 444 KSLEIVDFSSNNLSG 458 (732)
Q Consensus 444 ~~L~~L~Ls~N~l~~ 458 (732)
++|++|++++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344455555554443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.54 E-value=0.33 Score=45.45 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=43.8
Q ss_pred CcceeecccccccccCcccccCCCCCcEEEcccCceeeecc-ccCC-CCCCCCEEEccCC-cccccchhhhhcCCCCCEE
Q 004747 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIP-LTLA-GLKSLEIVDFSSN-NLSGSLNDAITKWTNLKYF 473 (732)
Q Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~-~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 473 (732)
.++.++-++..+..+--+.+.++++++.|.+.+|.--+..- ..+. -.++|+.|++++| +|++.--.++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34445555555544444455566666666666654321100 0111 2356777777765 4665555566667777776
Q ss_pred EcccC
Q 004747 474 SIARN 478 (732)
Q Consensus 474 ~L~~N 478 (732)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 66543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.79 E-value=2.7 Score=25.27 Aligned_cols=15 Identities=47% Similarity=0.711 Sum_probs=10.2
Q ss_pred ccCCcEEeCCCCcCc
Q 004747 606 LRSLRALDLSHNSLT 620 (732)
Q Consensus 606 l~~L~~LdLs~N~l~ 620 (732)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.08 E-value=3.7 Score=24.64 Aligned_cols=13 Identities=54% Similarity=0.790 Sum_probs=7.7
Q ss_pred CCcEEeCCCCcCc
Q 004747 608 SLRALDLSHNSLT 620 (732)
Q Consensus 608 ~L~~LdLs~N~l~ 620 (732)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4556666666655
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.43 E-value=5 Score=24.55 Aligned_cols=14 Identities=64% Similarity=0.783 Sum_probs=8.9
Q ss_pred cCCcEEeCCCCcCc
Q 004747 607 RSLRALDLSHNSLT 620 (732)
Q Consensus 607 ~~L~~LdLs~N~l~ 620 (732)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.29 E-value=26 Score=37.59 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=11.9
Q ss_pred CCCCEEECCCCCCCCCCCccc
Q 004747 130 SGLKTLDLSYNKFVGVVPDAI 150 (732)
Q Consensus 130 ~~L~~L~Ls~n~l~~~~p~~~ 150 (732)
+.++++|++.|.+....|-.+
T Consensus 165 pr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred chhhhhccCCCcccccCCccc
Confidence 455666666666655544333
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.61 E-value=13 Score=40.54 Aligned_cols=13 Identities=31% Similarity=0.222 Sum_probs=7.3
Q ss_pred ccEEECCCCcCcc
Q 004747 227 LLVLNLGSNRFSG 239 (732)
Q Consensus 227 L~~L~L~~n~l~~ 239 (732)
|++|-+.+|.+..
T Consensus 272 Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 272 LEELVLEGNPLCT 284 (585)
T ss_pred HHHeeecCCcccc
Confidence 5556666665543
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=43.95 E-value=80 Score=34.11 Aligned_cols=86 Identities=22% Similarity=0.204 Sum_probs=47.0
Q ss_pred CCCcEEEcccCceeeecccc--CCCCCCCCEEEccCCcc-----cccchhhh----hcCCCCCEEEcccCCCccccc---
Q 004747 420 DSLKILDISNNQISGEIPLT--LAGLKSLEIVDFSSNNL-----SGSLNDAI----TKWTNLKYFSIARNKLSGNLP--- 485 (732)
Q Consensus 420 ~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l-----~~~~~~~~----~~l~~L~~L~L~~N~l~~~~p--- 485 (732)
..+++|.+.+|.+.++.-.. ...-++.+.+++..-.- .+...... ....-+..+.++.|++....-
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 34778888888777654322 23335566666654321 11111111 112236677778887764332
Q ss_pred hhhhcCCCCCEEEccCCcCc
Q 004747 486 NWLFSFQAIQMMDFSTNKFM 505 (732)
Q Consensus 486 ~~~~~~~~L~~L~ls~N~l~ 505 (732)
.....-+.+..||+++|...
T Consensus 434 n~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred HhhccCcccccccccCCCcc
Confidence 23345567888999988763
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.73 E-value=13 Score=40.72 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=17.4
Q ss_pred CCCCEEEccCC--cccccchhhhhc--CCCCCEEEcccCCCcc
Q 004747 444 KSLEIVDFSSN--NLSGSLNDAITK--WTNLKYFSIARNKLSG 482 (732)
Q Consensus 444 ~~L~~L~Ls~N--~l~~~~~~~~~~--l~~L~~L~L~~N~l~~ 482 (732)
++|..|+|++| .+... .++.+ ...|++|.+.+|++..
T Consensus 244 pklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 244 PKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred chhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 55566666665 22211 12222 2345566666666543
No 93
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=40.35 E-value=22 Score=29.45 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=7.3
Q ss_pred hhHHHhhhhhhhhccc
Q 004747 707 FVSFYLGVVALFCSAR 722 (732)
Q Consensus 707 ~~~~~~~~~~~~~~~~ 722 (732)
+++.++++++||+.+|
T Consensus 78 ~v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 78 VVGGLVGFLCWWFVCR 93 (96)
T ss_pred HHHHHHHHHhheeEEe
Confidence 3444555544444333
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=39.06 E-value=27 Score=20.71 Aligned_cols=12 Identities=58% Similarity=0.678 Sum_probs=7.1
Q ss_pred CCCCEEeCCCCC
Q 004747 154 RNLRELILKGNP 165 (732)
Q Consensus 154 ~~L~~L~Ls~n~ 165 (732)
++|++|+|++|+
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666663
No 95
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=38.93 E-value=11 Score=24.83 Aligned_cols=17 Identities=12% Similarity=0.413 Sum_probs=7.8
Q ss_pred eehhhhhHHHhhhhhhh
Q 004747 702 FCLSFFVSFYLGVVALF 718 (732)
Q Consensus 702 ~~~~~~~~~~~~~~~~~ 718 (732)
+.+|+++|+++..+..+
T Consensus 8 IIv~V~vg~~iiii~~~ 24 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMF 24 (38)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555554433333
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.87 E-value=11 Score=32.65 Aligned_cols=6 Identities=0% Similarity=0.229 Sum_probs=2.3
Q ss_pred hhhhhh
Q 004747 714 VVALFC 719 (732)
Q Consensus 714 ~~~~~~ 719 (732)
++++++
T Consensus 83 li~y~i 88 (122)
T PF01102_consen 83 LISYCI 88 (122)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333443
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=34.67 E-value=21 Score=46.84 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=16.9
Q ss_pred ecccccceecCCc-ccCccCCcEEeCCCCcCc
Q 004747 590 NLSFNFLDGQVPG-LYRLRSLRALDLSHNSLT 620 (732)
Q Consensus 590 ~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~ 620 (732)
||++|+|+...+. +..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4566666533333 555666666666666554
No 98
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=30.68 E-value=22 Score=28.27 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=6.3
Q ss_pred HHHhhhhhhhhcccc
Q 004747 709 SFYLGVVALFCSART 723 (732)
Q Consensus 709 ~~~~~~~~~~~~~~~ 723 (732)
..++.+|+++|.+|+
T Consensus 45 il~VilwfvCC~kRk 59 (94)
T PF05393_consen 45 ILLVILWFVCCKKRK 59 (94)
T ss_pred HHHHHHHHHHHHHhh
Confidence 333444444444433
No 99
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=28.51 E-value=36 Score=30.57 Aligned_cols=14 Identities=14% Similarity=0.112 Sum_probs=6.3
Q ss_pred eeeehhhhhHHHhh
Q 004747 700 WAFCLSFFVSFYLG 713 (732)
Q Consensus 700 ~~~~~~~~~~~~~~ 713 (732)
...++|++++++++
T Consensus 52 IGvVVGVGg~ill~ 65 (154)
T PF04478_consen 52 IGVVVGVGGPILLG 65 (154)
T ss_pred EEEEecccHHHHHH
Confidence 34445554444433
Done!