Query 004747
Match_columns 732
No_of_seqs 879 out of 5820
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 04:30:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.1E-85 3.9E-90 771.5 44.4 630 40-678 10-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-64 4.4E-69 593.2 35.6 558 82-646 126-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-58 5.1E-63 536.9 47.0 540 81-669 24-625 (680)
4 3t6q_A CD180 antigen; protein- 100.0 1.1E-56 3.8E-61 514.2 37.4 513 83-648 34-564 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 7.9E-56 2.7E-60 514.0 42.4 525 82-648 49-626 (680)
6 3j0a_A TOLL-like receptor 5; m 100.0 5.4E-55 1.8E-59 516.9 41.1 546 70-678 14-591 (844)
7 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-55 1.5E-59 501.0 38.7 508 81-648 31-562 (606)
8 3t6q_A CD180 antigen; protein- 100.0 3.2E-54 1.1E-58 493.8 42.4 526 87-668 17-562 (606)
9 4eco_A Uncharacterized protein 100.0 5E-56 1.7E-60 508.6 27.2 501 40-645 28-601 (636)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-53 5.4E-58 488.0 41.2 524 86-670 15-562 (606)
11 3j0a_A TOLL-like receptor 5; m 100.0 4.8E-53 1.6E-57 500.3 43.1 521 87-670 9-564 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 3E-54 1E-58 501.3 29.4 499 40-642 267-862 (876)
13 2z81_A CD282 antigen, TOLL-lik 100.0 6.7E-51 2.3E-55 460.6 30.6 491 69-648 3-514 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 1.4E-49 4.8E-54 452.1 38.7 488 107-650 29-537 (570)
15 2z63_A TOLL-like receptor 4, v 100.0 4.7E-48 1.6E-52 439.5 36.8 487 81-625 27-536 (570)
16 4eco_A Uncharacterized protein 100.0 5.6E-49 1.9E-53 450.2 20.6 460 130-670 81-604 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 3E-48 1E-52 435.6 23.2 459 85-648 3-485 (520)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-47 3.9E-52 430.9 27.3 449 109-668 3-483 (520)
19 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-47 1.2E-51 430.1 29.5 469 81-624 25-514 (549)
20 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-45 6.3E-50 423.7 38.9 510 83-646 53-582 (635)
21 4ecn_A Leucine-rich repeat pro 100.0 2.2E-46 7.4E-51 435.4 26.2 414 181-648 324-844 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-44 4E-49 410.0 24.9 455 85-648 34-514 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.8E-44 1.6E-48 405.0 28.2 450 107-668 32-512 (562)
24 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-42 1.2E-46 396.4 40.0 547 58-668 10-582 (635)
25 1jl5_A Outer protein YOPM; leu 100.0 6.3E-43 2.1E-47 382.8 18.2 283 103-433 8-290 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 8.7E-40 3E-44 360.6 32.5 367 106-509 30-412 (455)
27 3v47_A TOLL-like receptor 5B a 100.0 5.1E-40 1.7E-44 362.4 28.4 364 226-650 31-414 (455)
28 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-40 3.9E-45 347.5 19.5 291 39-359 3-302 (313)
29 1jl5_A Outer protein YOPM; leu 100.0 1.6E-40 5.5E-45 363.7 21.1 403 129-650 10-417 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 3.1E-38 1.1E-42 345.8 30.7 322 95-505 31-352 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 3.1E-38 1E-42 345.9 26.3 356 81-515 41-397 (457)
32 1o6v_A Internalin A; bacterial 100.0 5.9E-36 2E-40 330.4 33.1 344 82-506 46-389 (466)
33 1o6v_A Internalin A; bacterial 100.0 4.9E-35 1.7E-39 323.0 35.6 323 81-458 67-389 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 2E-36 7E-41 335.6 23.8 321 252-646 14-335 (477)
35 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-35 1.3E-39 305.8 21.5 258 372-675 50-312 (313)
36 2id5_A Lingo-1, leucine rich r 100.0 1.3E-34 4.4E-39 321.1 26.2 274 207-507 14-287 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 2.1E-33 7E-38 302.8 27.9 332 248-668 44-376 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 1.8E-33 6.1E-38 303.3 26.9 350 61-459 3-354 (390)
39 3oja_B Anopheles plasmodium-re 100.0 1.9E-33 6.4E-38 319.9 27.9 333 248-670 50-384 (597)
40 3oja_B Anopheles plasmodium-re 100.0 2.4E-33 8.3E-38 318.9 24.9 310 104-436 49-361 (597)
41 4fmz_A Internalin; leucine ric 100.0 4.2E-32 1.5E-36 287.8 28.8 305 270-644 41-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 7.9E-32 2.7E-36 285.7 29.4 306 246-620 41-346 (347)
43 4fcg_A Uncharacterized protein 100.0 7.5E-33 2.6E-37 290.2 15.2 276 39-360 24-313 (328)
44 1z7x_W Ribonuclease inhibitor; 100.0 9.3E-35 3.2E-39 320.9 -1.3 305 181-505 86-440 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 2E-34 6.7E-39 318.3 0.1 190 180-386 3-213 (461)
46 1xku_A Decorin; proteoglycan, 100.0 3.8E-30 1.3E-34 270.6 27.0 288 206-503 33-330 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 2.5E-30 8.4E-35 272.3 25.3 288 205-503 34-331 (332)
48 1xku_A Decorin; proteoglycan, 100.0 6.4E-30 2.2E-34 268.9 28.0 295 107-455 32-330 (330)
49 2ft3_A Biglycan; proteoglycan, 100.0 3.8E-30 1.3E-34 270.8 24.0 288 107-455 34-331 (332)
50 3ogk_B Coronatine-insensitive 100.0 4.9E-32 1.7E-36 309.0 5.4 323 271-641 190-548 (592)
51 3ogk_B Coronatine-insensitive 100.0 4.7E-31 1.6E-35 300.9 7.0 403 152-617 110-548 (592)
52 2z80_A TOLL-like receptor 2, v 100.0 1.1E-29 3.9E-34 269.6 16.7 285 66-388 26-317 (353)
53 2z80_A TOLL-like receptor 2, v 100.0 9.8E-29 3.3E-33 262.4 15.8 278 299-648 33-318 (353)
54 2z66_A Variable lymphocyte rec 100.0 8.9E-28 3E-32 249.7 21.8 252 326-647 9-264 (306)
55 2z66_A Variable lymphocyte rec 100.0 9.4E-28 3.2E-32 249.5 19.6 279 208-490 11-296 (306)
56 1wwl_A Monocyte differentiatio 100.0 1.8E-29 6.2E-34 262.9 4.3 249 345-646 40-311 (312)
57 3zyi_A Leucine-rich repeat-con 99.9 8.3E-27 2.8E-31 256.1 24.4 247 326-645 56-304 (452)
58 3o53_A Protein LRIM1, AGAP0063 99.9 8.7E-29 3E-33 258.4 7.8 266 326-649 12-281 (317)
59 3zyj_A Leucine-rich repeat-con 99.9 1.4E-26 4.7E-31 253.4 24.4 247 326-645 45-293 (440)
60 1wwl_A Monocyte differentiatio 99.9 1.4E-28 4.9E-33 256.1 7.0 256 293-622 39-311 (312)
61 1ozn_A Reticulon 4 receptor; N 99.9 2.4E-27 8E-32 243.8 16.0 175 328-505 15-190 (285)
62 4fcg_A Uncharacterized protein 99.9 7.3E-27 2.5E-31 244.6 19.6 225 273-505 81-314 (328)
63 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-26 4.2E-31 238.4 20.0 225 252-506 14-239 (285)
64 2p1m_B Transport inhibitor res 99.9 5.1E-30 1.8E-34 292.4 -6.4 464 68-621 33-545 (594)
65 3zyi_A Leucine-rich repeat-con 99.9 2.4E-26 8.3E-31 252.4 21.9 225 106-337 75-303 (452)
66 3o53_A Protein LRIM1, AGAP0063 99.9 4.4E-28 1.5E-32 253.1 6.9 254 111-404 15-270 (317)
67 3g06_A SSPH2 (leucine-rich rep 99.9 2.7E-26 9.2E-31 258.5 20.6 287 61-393 12-305 (622)
68 2p1m_B Transport inhibitor res 99.9 7.8E-29 2.7E-33 282.7 -1.6 253 343-641 260-541 (594)
69 3zyj_A Leucine-rich repeat-con 99.9 2.4E-25 8.1E-30 243.6 23.6 247 206-481 45-292 (440)
70 3oja_A Leucine-rich immune mol 99.9 5.9E-27 2E-31 258.7 10.8 234 349-639 35-270 (487)
71 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-24 5.4E-29 244.1 25.7 266 181-490 41-306 (622)
72 3oja_A Leucine-rich immune mol 99.9 4.3E-26 1.5E-30 251.8 11.7 233 131-379 35-269 (487)
73 2o6q_A Variable lymphocyte rec 99.9 1.8E-24 6.2E-29 220.2 20.8 219 67-312 2-220 (270)
74 2z62_A TOLL-like receptor 4, v 99.9 2.8E-24 9.5E-29 219.7 20.6 208 398-649 30-242 (276)
75 2z62_A TOLL-like receptor 4, v 99.9 3.1E-23 1E-27 211.9 19.9 226 329-623 12-240 (276)
76 3rfs_A Internalin B, repeat mo 99.9 2.5E-23 8.4E-28 212.0 14.9 224 250-489 20-243 (272)
77 3rfs_A Internalin B, repeat mo 99.9 1.7E-23 5.8E-28 213.1 13.7 159 345-505 60-218 (272)
78 3goz_A Leucine-rich repeat-con 99.9 3.7E-24 1.3E-28 227.7 7.7 181 302-505 3-209 (362)
79 2o6q_A Variable lymphocyte rec 99.9 4.8E-22 1.7E-26 202.2 21.4 204 299-508 18-221 (270)
80 2ast_B S-phase kinase-associat 99.9 4.3E-24 1.5E-28 225.0 4.8 270 67-370 34-315 (336)
81 4glp_A Monocyte differentiatio 99.9 1.6E-23 5.5E-28 217.7 7.6 223 349-645 65-308 (310)
82 3goz_A Leucine-rich repeat-con 99.9 3.2E-23 1.1E-27 220.4 10.0 160 230-389 3-184 (362)
83 1p9a_G Platelet glycoprotein I 99.9 7.4E-22 2.5E-26 202.6 19.3 204 293-506 6-209 (290)
84 2ca6_A RAN GTPase-activating p 99.9 1.6E-23 5.5E-28 225.0 6.6 185 325-509 95-320 (386)
85 2ast_B S-phase kinase-associat 99.9 4.3E-23 1.5E-27 217.4 8.9 80 299-385 49-131 (336)
86 3m19_A Variable lymphocyte rec 99.9 9.2E-22 3.1E-26 197.8 17.3 142 68-217 3-144 (251)
87 4glp_A Monocyte differentiatio 99.9 2E-22 6.8E-27 209.5 12.5 181 325-505 65-264 (310)
88 1p9a_G Platelet glycoprotein I 99.9 2.9E-21 1E-25 198.1 19.9 180 200-385 6-185 (290)
89 2ca6_A RAN GTPase-activating p 99.9 6E-23 2.1E-27 220.6 6.6 258 241-501 24-339 (386)
90 2xwt_C Thyrotropin receptor; s 99.9 1.7E-21 5.7E-26 194.4 15.0 177 415-641 50-236 (239)
91 2xwt_C Thyrotropin receptor; s 99.9 3.2E-21 1.1E-25 192.3 15.4 196 349-617 32-236 (239)
92 3m19_A Variable lymphocyte rec 99.8 2.1E-20 7E-25 187.9 18.7 179 326-507 16-194 (251)
93 1h6u_A Internalin H; cell adhe 99.8 8.8E-21 3E-25 196.6 16.2 173 416-645 59-231 (308)
94 4ay9_X Follicle-stimulating ho 99.8 1.6E-20 5.4E-25 198.6 16.5 183 327-513 12-198 (350)
95 1h6u_A Internalin H; cell adhe 99.8 2.6E-20 8.8E-25 193.1 17.3 208 253-505 23-230 (308)
96 3cvr_A Invasion plasmid antige 99.8 3E-20 1E-24 206.6 13.2 198 71-321 49-254 (571)
97 4ay9_X Follicle-stimulating ho 99.8 1.1E-19 3.7E-24 192.2 15.0 241 351-643 12-258 (350)
98 2o6s_A Variable lymphocyte rec 99.8 1.9E-19 6.4E-24 175.3 14.3 151 327-504 10-160 (208)
99 2o6s_A Variable lymphocyte rec 99.8 7.7E-19 2.6E-23 171.0 15.2 89 325-420 101-189 (208)
100 3cvr_A Invasion plasmid antige 99.8 1.1E-18 3.7E-23 194.1 18.0 189 107-349 60-255 (571)
101 1h6t_A Internalin B; cell adhe 99.8 1.8E-18 6.2E-23 177.5 12.8 189 399-646 27-215 (291)
102 3e6j_A Variable lymphocyte rec 99.7 1.4E-17 4.7E-22 164.5 15.9 161 63-241 12-175 (229)
103 4b8c_D Glucose-repressible alc 99.7 5.3E-19 1.8E-23 204.0 5.7 226 41-307 131-369 (727)
104 1m9s_A Internalin B; cell inva 99.7 6.2E-18 2.1E-22 190.2 13.7 192 348-599 21-212 (605)
105 1h6t_A Internalin B; cell adhe 99.7 1.6E-17 5.5E-22 170.4 15.2 188 251-481 26-213 (291)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 2.5E-17 8.7E-22 161.4 15.1 151 328-481 15-166 (220)
107 2v9t_B SLIT homolog 2 protein 99.7 2.5E-17 8.4E-22 161.5 14.9 152 327-481 14-165 (220)
108 2xot_A Amphoterin-induced prot 99.7 2.1E-17 7.1E-22 175.3 14.7 175 328-505 22-202 (361)
109 2xot_A Amphoterin-induced prot 99.7 1.4E-17 4.8E-22 176.7 13.3 177 300-482 21-203 (361)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 2.9E-17 9.9E-22 161.0 14.5 159 350-511 13-172 (220)
111 1m9s_A Internalin B; cell inva 99.7 2.1E-17 7.2E-22 185.9 15.0 190 227-435 23-212 (605)
112 2v9t_B SLIT homolog 2 protein 99.7 3.8E-17 1.3E-21 160.2 14.6 154 351-507 14-167 (220)
113 1dce_A Protein (RAB geranylger 99.7 8.6E-20 2.9E-24 204.1 -5.3 77 559-637 485-566 (567)
114 1w8a_A SLIT protein; signaling 99.7 1.6E-17 5.6E-22 159.1 9.7 155 471-671 11-167 (192)
115 3e6j_A Variable lymphocyte rec 99.7 1.2E-16 4E-21 157.8 15.8 151 326-480 21-171 (229)
116 4b8c_D Glucose-repressible alc 99.7 5.2E-18 1.8E-22 195.8 6.3 181 414-647 218-407 (727)
117 1dce_A Protein (RAB geranylger 99.7 1.2E-19 4E-24 203.0 -7.2 202 247-498 347-566 (567)
118 1xeu_A Internalin C; cellular 99.7 2.4E-17 8.2E-22 166.4 10.0 167 422-646 21-187 (263)
119 4ezg_A Putative uncharacterize 99.7 1.7E-16 5.8E-21 152.8 12.1 149 325-505 45-194 (197)
120 4ezg_A Putative uncharacterize 99.7 3.1E-16 1.1E-20 151.0 13.1 155 293-481 40-194 (197)
121 3sb4_A Hypothetical leucine ri 99.6 1.2E-16 4.2E-21 167.1 8.5 286 180-498 25-327 (329)
122 1xeu_A Internalin C; cellular 99.6 6.5E-16 2.2E-20 155.8 13.0 170 247-458 17-186 (263)
123 3sb4_A Hypothetical leucine ri 99.6 4.5E-16 1.5E-20 162.8 8.0 221 224-474 100-327 (329)
124 1w8a_A SLIT protein; signaling 99.6 9.4E-15 3.2E-19 139.8 13.8 129 327-458 11-140 (192)
125 2ell_A Acidic leucine-rich nuc 99.6 6.5E-15 2.2E-19 137.7 10.9 66 416-481 91-160 (168)
126 2ell_A Acidic leucine-rich nuc 99.6 1.8E-14 6.3E-19 134.6 12.4 132 249-385 24-160 (168)
127 2o6r_A Variable lymphocyte rec 99.6 3E-14 1E-18 134.4 13.9 135 70-221 7-141 (177)
128 2je0_A Acidic leucine-rich nuc 99.5 9.3E-15 3.2E-19 133.7 9.5 37 349-385 18-55 (149)
129 2je0_A Acidic leucine-rich nuc 99.5 8E-15 2.7E-19 134.1 9.0 130 370-501 15-149 (149)
130 2wfh_A SLIT homolog 2 protein 99.5 9.2E-14 3.1E-18 132.9 13.1 102 327-432 13-114 (193)
131 2wfh_A SLIT homolog 2 protein 99.5 1.1E-13 3.8E-18 132.3 13.4 128 351-482 13-140 (193)
132 2o6r_A Variable lymphocyte rec 99.5 1.6E-13 5.6E-18 129.3 14.0 130 326-458 9-138 (177)
133 4fs7_A Uncharacterized protein 99.5 1.4E-12 4.8E-17 139.8 22.6 329 100-497 65-393 (394)
134 4fdw_A Leucine rich hypothetic 99.5 2.3E-12 7.8E-17 137.7 22.7 242 349-644 136-383 (401)
135 4fdw_A Leucine rich hypothetic 99.5 7.4E-13 2.5E-17 141.4 18.5 248 242-504 129-382 (401)
136 4fs7_A Uncharacterized protein 99.5 8.8E-13 3E-17 141.4 18.7 312 122-502 63-376 (394)
137 3g39_A Variable lymphocyte rec 99.4 3E-13 1E-17 126.4 10.2 90 559-648 29-119 (170)
138 1ds9_A Outer arm dynein; leuci 99.4 2.5E-15 8.4E-20 144.8 -5.0 149 325-504 19-184 (198)
139 1a9n_A U2A', U2A'; complex (nu 99.4 3.6E-13 1.2E-17 126.8 9.8 132 344-505 15-153 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.4 3.1E-13 1.1E-17 127.3 9.2 130 323-481 18-153 (176)
141 2r9u_A Variable lymphocyte rec 99.4 8E-13 2.7E-17 123.9 10.6 90 559-648 32-122 (174)
142 1ds9_A Outer arm dynein; leuci 99.4 1.4E-14 4.7E-19 139.5 -2.7 135 247-389 16-157 (198)
143 3g39_A Variable lymphocyte rec 99.3 8E-12 2.7E-16 116.7 12.6 105 86-219 13-117 (170)
144 2r9u_A Variable lymphocyte rec 99.3 1.5E-11 5E-16 115.3 12.5 104 86-218 16-119 (174)
145 3un9_A NLR family member X1; l 99.3 2.6E-13 9E-18 143.5 -0.5 66 246-311 180-253 (372)
146 4gt6_A Cell surface protein; l 99.3 5.6E-10 1.9E-14 119.5 24.5 107 101-212 58-168 (394)
147 4gt6_A Cell surface protein; l 99.2 5.7E-10 1.9E-14 119.4 21.4 332 123-504 56-390 (394)
148 3un9_A NLR family member X1; l 99.2 3.2E-12 1.1E-16 135.2 1.7 161 325-505 73-252 (372)
149 2ifg_A High affinity nerve gro 99.2 1.1E-10 3.6E-15 122.9 11.6 109 68-193 4-116 (347)
150 2ifg_A High affinity nerve gro 99.1 1E-10 3.5E-15 123.0 9.0 89 556-645 27-117 (347)
151 4h09_A Hypothetical leucine ri 98.9 3.1E-07 1E-11 97.6 24.0 108 391-501 235-342 (379)
152 2ra8_A Uncharacterized protein 98.8 2.1E-09 7.1E-14 112.6 6.0 64 248-311 251-321 (362)
153 4h09_A Hypothetical leucine ri 98.8 6.8E-07 2.3E-11 94.9 22.6 316 125-492 41-356 (379)
154 2ra8_A Uncharacterized protein 98.7 2.4E-08 8.1E-13 104.5 8.5 84 418-503 250-341 (362)
155 3rw6_A Nuclear RNA export fact 98.6 2.1E-09 7E-14 106.7 -3.6 80 127-210 167-257 (267)
156 1io0_A Tropomodulin; LRR prote 98.3 3.4E-07 1.2E-11 86.2 3.9 121 365-505 29-164 (185)
157 1io0_A Tropomodulin; LRR prote 98.3 2.6E-07 8.9E-12 87.1 3.0 122 340-481 28-164 (185)
158 3rw6_A Nuclear RNA export fact 98.3 2.9E-07 1E-11 91.2 3.4 64 583-648 169-237 (267)
159 3e4g_A ATP synthase subunit S, 98.0 2.2E-06 7.4E-11 78.7 2.7 85 131-215 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.8 1.2E-05 4E-10 73.8 3.7 34 469-502 115-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0011 3.8E-08 61.8 4.1 34 420-453 98-135 (197)
162 3rfe_A Platelet glycoprotein I 96.6 0.0019 6.3E-08 56.3 5.0 37 608-644 32-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0014 5E-08 61.0 4.5 91 414-504 64-169 (197)
164 3rfe_A Platelet glycoprotein I 96.2 0.01 3.5E-07 51.5 7.1 54 110-165 12-66 (130)
165 2l2t_A Receptor tyrosine-prote 60.4 3 0.0001 27.7 1.0 13 711-723 25-37 (44)
166 2jwa_A Receptor tyrosine-prote 48.6 5.3 0.00018 26.5 0.7 21 703-723 18-38 (44)
167 2ks1_B Epidermal growth factor 44.1 7.6 0.00026 25.8 1.0 13 711-723 26-38 (44)
168 2lz0_A Uncharacterized protein 37.8 38 0.0013 27.1 4.5 46 118-164 8-53 (100)
169 2k1k_A Ephrin type-A receptor 30.5 17 0.00057 23.3 0.9 9 703-711 17-25 (38)
170 2lz0_A Uncharacterized protein 29.3 45 0.0015 26.6 3.6 37 439-476 15-51 (100)
171 1iij_A ERBB-2 receptor protein 22.5 24 0.00082 22.1 0.5 21 703-723 14-34 (35)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-85 Score=771.52 Aligned_cols=630 Identities=33% Similarity=0.461 Sum_probs=499.7
Q ss_pred CHHhHHHHHHHHhcCCCCCCCCCCC-CCCCCCCccceeecCCCCcEEEEEcCCCCCccc---cc----------------
Q 004747 40 NLEDKASLLLFKSLVQDPTQKLSSW-VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQ---VH---------------- 99 (732)
Q Consensus 40 ~~~~~~~l~~~k~~~~~~~~~l~~w-~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~---~~---------------- 99 (732)
..+|++||++||+++.||. .+++| .+++||.|.||+|+ .++|++|+|+++.+.|. ++
T Consensus 10 ~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~ 86 (768)
T 3rgz_A 10 LYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN 86 (768)
T ss_dssp HHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTT
T ss_pred CHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcC
Confidence 4578889999999999988 89999 67899999999998 68999999999999886 44
Q ss_pred -------ccccCCCCCCEEECCCCCCCCcccc--cccCCCCCCEEECCCCCCCCCCCccc-cCCCCCCEEeCCCCCCCCC
Q 004747 100 -------PRLCKLSFLEFLVLSSNAFTGRIST--CFGGLSGLKTLDLSYNKFVGVVPDAI-MKLRNLRELILKGNPELGG 169 (732)
Q Consensus 100 -------~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~~~~~ 169 (732)
..++++++|++|+|++|.++|.+|. .++++++|++|||++|.+.+.+|..+ .++++|++|+|++|. +.+
T Consensus 87 ~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~ 165 (768)
T 3rgz_A 87 SHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISG 165 (768)
T ss_dssp SCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEE
T ss_pred CCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCC
Confidence 4677889999999999999888887 88888888888888888877776654 556666666666552 222
Q ss_pred cCCch-------------------------hhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccc--
Q 004747 170 VFPGW-------------------------VGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD-- 222 (732)
Q Consensus 170 ~~p~~-------------------------~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-- 222 (732)
..|.. +..+ ++|++|++++|.+++.+|. ++++++|++|++++|.+++..+.
T Consensus 166 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l 243 (768)
T 3rgz_A 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC-VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI 243 (768)
T ss_dssp ETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTC-TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred cCChhhhhhccCCCCCEEECCCCcccccCCcccC-CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH
Confidence 22211 0222 4455555555555544443 55555555555555555443333
Q ss_pred -----------------------ccccccEEECCCCcCccccCchhhcc-cccCeeeCCCCccccccchhhhccCCCCEE
Q 004747 223 -----------------------FYQSLLVLNLGSNRFSGTLPCFAASA-MSLTVLKLDNNSVVGGIPTCIASLQALTHL 278 (732)
Q Consensus 223 -----------------------~~~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 278 (732)
.+.+|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..++++++|++|
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 323 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence 23346666666666666667666554 778888888888877778888888888888
Q ss_pred EeccCCCCCcCccc-cccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccC--CCCCCEEec
Q 004747 279 NLSHNHLNYEISPR-LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITE--LKSLQALFL 355 (732)
Q Consensus 279 ~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~--l~~L~~L~L 355 (732)
++++|.+++.+|.. +..+++|++|++++|.+++.+|..+..+.. +|++|++++|.+++.+|..+.. +++|++|++
T Consensus 324 ~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA--SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp ECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT--TCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred ECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc--CCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 88888887777765 777888888888888888777877776542 6888888888888878877766 788999999
Q ss_pred cCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeee
Q 004747 356 SNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE 435 (732)
Q Consensus 356 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 435 (732)
++|.+++.+|..++++++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccC
Q 004747 436 IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNF 515 (732)
Q Consensus 436 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~ 515 (732)
+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..+..+++|++|++++|+++|.+|..++..
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ccccCcCCCCC--------------------------CCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccC
Q 004747 516 SLNFNKSDIGR--------------------------SMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSD 569 (732)
Q Consensus 516 ~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~ 569 (732)
........... ..+.............+....+++........++.|+.|||++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 21110000000 0000000000000000001112222223345678899999999
Q ss_pred CcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCC
Q 004747 570 NLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 648 (732)
Q Consensus 570 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 648 (732)
|+++|.+|.+++++++|+.|+|++|+++|.+|. ++++++|++||||+|+++|.+|..++.+++|++||+++|+++|.||
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCc-cccCCCCCCCCCCCCCCCCC
Q 004747 649 WKQGYQKFPG-AFAGNPNLCLESSHGECNRT 678 (732)
Q Consensus 649 ~~~~~~~~~~-~~~gn~~lcg~~~~~~c~~~ 678 (732)
..+++.+|+. +|.|||++||.|+. .|...
T Consensus 722 ~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 722 EMGQFETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp SSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred CchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 9999999988 99999999999987 89754
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-64 Score=593.17 Aligned_cols=558 Identities=31% Similarity=0.446 Sum_probs=434.2
Q ss_pred CcEEEEEcCCCCCcccccccc-cCCCCCCEEECCCCCCCCccccc---c----------------------cCCCCCCEE
Q 004747 82 GHVVSINLTDTSLSGQVHPRL-CKLSFLEFLVLSSNAFTGRISTC---F----------------------GGLSGLKTL 135 (732)
Q Consensus 82 ~~v~~L~L~~~~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~---~----------------------~~l~~L~~L 135 (732)
.+++.|++++|.+.+.++..+ .++++|++|++++|.+++..+.. + ..+++|++|
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 205 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEE
T ss_pred CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEE
Confidence 356777777776666655544 55666666666666665544433 2 566677777
Q ss_pred ECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeeccc
Q 004747 136 DLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNN 215 (732)
Q Consensus 136 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 215 (732)
++++|.+++.+|. ++++++|++|++++| .+.+.+|..++.+ ++|++|++++|.+.+.+|.. .+++|++|++++|.
T Consensus 206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 206 DVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTC-TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280 (768)
T ss_dssp ECCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTC-SSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSE
T ss_pred ECcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcC-CCCCEEECCCCcccCccCcc--ccCCCCEEECcCCc
Confidence 7777777766665 777777778887777 5666777777777 77888888888877766654 77888888888888
Q ss_pred CCCcccccc----ccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchh-hhccCCCCEEEeccCCCCCcCc
Q 004747 216 LTGNVHDFY----QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC-IASLQALTHLNLSHNHLNYEIS 290 (732)
Q Consensus 216 l~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~ 290 (732)
+++.+|..+ .+|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|.. +.++++|++|++++|.+++.+|
T Consensus 281 l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p 360 (768)
T 3rgz_A 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360 (768)
T ss_dssp EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence 887777654 56999999999999999999999999999999999999888876 8999999999999999999999
Q ss_pred cccccCc-CCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccC
Q 004747 291 PRLVFFE-KLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369 (732)
Q Consensus 291 ~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 369 (732)
..+..++ +|++|++++|.+++.+|..+... ..++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..++
T Consensus 361 ~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 439 (768)
T 3rgz_A 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439 (768)
T ss_dssp TTHHHHTTTCSEEECCSSEEEEECCTTTTCS-TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred HHHHhhhcCCcEEEccCCCcCCCcChhhhhc-ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh
Confidence 9999887 99999999999998888877651 123899999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEE
Q 004747 370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIV 449 (732)
Q Consensus 370 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 449 (732)
.+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|++|++++|++++.+|.++..+++|++|
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCc----------------------Cccc
Q 004747 450 DFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK----------------------FMGF 507 (732)
Q Consensus 450 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~----------------------l~~~ 507 (732)
++++|++++.+|..++.+++|++|++++|+++|.+|..+.....+..+++..+. +.|.
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999998877654433332222100 0000
Q ss_pred CCcccccCcc----ccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccc
Q 004747 508 IPDGNFNFSL----NFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQL 583 (732)
Q Consensus 508 ~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 583 (732)
.+........ .+....+.+..+......+....++++...+.+.....+..++.|+.|||++|+++|.+|..++++
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 1100000000 000000000000000001112222232233333333344568899999999999999999999999
Q ss_pred cCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCc-ceee
Q 004747 584 QGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNS-FSGF 646 (732)
Q Consensus 584 ~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~-l~g~ 646 (732)
++|++|||++|+++|.+|. +.++++|++||||+|+++|.||.. ..+..+....+.+|+ +.|.
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 9999999999999999999 999999999999999999999975 345556666677775 5553
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-58 Score=536.86 Aligned_cols=540 Identities=22% Similarity=0.211 Sum_probs=392.2
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (732)
Q Consensus 81 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (732)
..++++|+++++.+++..+..+.++++|++|++++|.+++..|..|+++++|++|+|++|.+++..+.+|+++++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 35899999999999988778899999999999999999999999999999999999999999977777899999999999
Q ss_pred CCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccccc-----ccccEEECCCC
Q 004747 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY-----QSLLVLNLGSN 235 (732)
Q Consensus 161 Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~-----~~L~~L~L~~n 235 (732)
+++| .+.+..|..++++ ++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+ .+|++|++++|
T Consensus 104 L~~n-~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 104 LMSN-SIQKIKNNPFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCSS-CCCCCCSCTTTTC-TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CCCC-ccCccChhHcccc-CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 9999 5667777888888 899999999999999889999999999999999999998877632 46999999999
Q ss_pred cCccccCchhhcccc---------------------------cCeeeCCCCccccccchhhhccCC--CCEEEeccCCCC
Q 004747 236 RFSGTLPCFAASAMS---------------------------LTVLKLDNNSVVGGIPTCIASLQA--LTHLNLSHNHLN 286 (732)
Q Consensus 236 ~l~~~~~~~~~~~~~---------------------------L~~L~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~ 286 (732)
.+++..|..+..+.+ |+.|++++|.+.+..|.++..++. |++|++++|.++
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 999888887776655 455555555555555555555543 666666666666
Q ss_pred CcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccC-----CCcc----cccCCCCCCEEeccC
Q 004747 287 YEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG-----EIPL----KITELKSLQALFLSN 357 (732)
Q Consensus 287 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~-----~~p~----~l~~l~~L~~L~Ls~ 357 (732)
+..+..+..+++|++|++++|.+++..|..+..+. +|+.|++++|...+ .+|. .+..+++|++|++++
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF---NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCT---TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhcCCC---CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence 55555566666666666666666655555555444 56666666554332 1222 455566666666666
Q ss_pred ccCCCccccccCCCCCCCEEEccCCcCcccc--CccccC--CcCcceeecccccccccCcccccCCCCCcEEEcccCcee
Q 004747 358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGSI--PLNIVG--CFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433 (732)
Q Consensus 358 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 433 (732)
|.+++..+..+.++++|++|++++|.+.+.. +..+.. .++|+.|++++|++++..+..+..+++|+.|++++|.++
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 6666655555666666666666666543211 112222 235666666666666666666666666666666666666
Q ss_pred eecc-ccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCc--cccchhhhcCCCCCEEEccCCcCcccCCc
Q 004747 434 GEIP-LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS--GNLPNWLFSFQAIQMMDFSTNKFMGFIPD 510 (732)
Q Consensus 434 ~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~~~~L~~L~ls~N~l~~~~p~ 510 (732)
+.+| ..+.++++|++|++++|++.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~- 497 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND- 497 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT-
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh-
Confidence 5554 45666666666666666666666666666666666666666665 4456666666666666666666654322
Q ss_pred ccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccC----C----ccccc
Q 004747 511 GNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTI----P----KGLFQ 582 (732)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i----p----~~l~~ 582 (732)
..| ..+++|++|++++|++++.. | ..+.+
T Consensus 498 ~~~-------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~ 534 (680)
T 1ziw_A 498 DML-------------------------------------------EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534 (680)
T ss_dssp TTT-------------------------------------------TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred hhh-------------------------------------------ccccccCEEeCCCCCccccchhhccCCcchhhcC
Confidence 222 23788999999999998542 1 23778
Q ss_pred ccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCCC--CCCCcCc-
Q 004747 583 LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQ--GYQKFPG- 658 (732)
Q Consensus 583 l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~--~~~~~~~- 658 (732)
+++|++|+|++|+++...+. +.++++|+.|||++|++++..+..|..+++|++|++++|++++..|... .+..+..
T Consensus 535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l 614 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred CCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence 99999999999999844444 7889999999999999998777888999999999999999998776432 2344445
Q ss_pred cccCCCCCCCC
Q 004747 659 AFAGNPNLCLE 669 (732)
Q Consensus 659 ~~~gn~~lcg~ 669 (732)
.+.|||..|..
T Consensus 615 ~l~~N~~~c~c 625 (680)
T 1ziw_A 615 DMRFNPFDCTC 625 (680)
T ss_dssp ECTTCCCCBCC
T ss_pred EccCCCcccCC
Confidence 78999998854
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-56 Score=514.17 Aligned_cols=513 Identities=18% Similarity=0.150 Sum_probs=326.7
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCC
Q 004747 83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK 162 (732)
Q Consensus 83 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 162 (732)
.++.|++++|.+++..+.++.++++|++|++++|++++..|..|+++++|++|+|++|.+++..|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 45555555555554444455555555555555555554445555555555555555555555555555555555555555
Q ss_pred CCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccccc---cccc--EEECCCCcC
Q 004747 163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLL--VLNLGSNRF 237 (732)
Q Consensus 163 ~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~L~--~L~L~~n~l 237 (732)
+| .+.+..|..++.+ ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ .+|+ .|++++|.+
T Consensus 114 ~n-~i~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 114 QT-GISSIDFIPLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TS-CCSCGGGSCCTTC-TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred cc-CcccCCcchhccC-CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 55 2333333334444 455555555555554322233335555555555555554443322 2244 455555555
Q ss_pred ccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCC-----CcCccccccCc--CCcEEEccCCCCC
Q 004747 238 SGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN-----YEISPRLVFFE--KLLLLDLSFNDLS 310 (732)
Q Consensus 238 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~--~L~~L~Ls~n~l~ 310 (732)
++..|..+.. .+|++|++++|. ..+..+..+.+++...+....+. ...+..+..+. +|+.|++++|.++
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 5444433322 345555555544 22333334433333322222111 11112222222 6778888888887
Q ss_pred CCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCc
Q 004747 311 GPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL 390 (732)
Q Consensus 311 ~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 390 (732)
+..+..+..++ +|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|.
T Consensus 268 ~~~~~~~~~l~---~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 268 NISSNTFHCFS---GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp SCCTTTTTTCT---TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred ccCHHHhcccc---CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 66665566555 7888888888887 6777777788888888888888777777778888888888888877766654
Q ss_pred c-ccCCcCcceeecccccccccC--cccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchh-hhhc
Q 004747 391 N-IVGCFQLLALIVNNNNLSGEI--QPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND-AITK 466 (732)
Q Consensus 391 ~-~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~ 466 (732)
. +..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..+. .+..
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 3 677788888888888877665 56677788888888888888777777778888888888888888766543 3677
Q ss_pred CCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccC-CcccccCccccCcCCCCCCCCCCcccCCCceeEEeEE
Q 004747 467 WTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFI-PDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISV 545 (732)
Q Consensus 467 l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (732)
+++|++|++++|.+.+..|..+..+++|++|++++|++++.. |..
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------------------------------- 469 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT---------------------------------- 469 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS----------------------------------
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc----------------------------------
Confidence 888888888888887777777778888888888888776521 110
Q ss_pred EeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCC
Q 004747 546 TAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIP 624 (732)
Q Consensus 546 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip 624 (732)
.....+++|+.|++++|++++..|..+.++++|++|+|++|++++.+|. +.+++.| .|||++|++++.+|
T Consensus 470 --------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 470 --------NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp --------CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred --------hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 0112367778888888888877777888888888888888888877776 7778888 88888888887777
Q ss_pred cCCCCCCCCCEEEcccCcceeeCC
Q 004747 625 GNISSLQELTLLNLSYNSFSGFVP 648 (732)
Q Consensus 625 ~~l~~l~~L~~L~ls~N~l~g~ip 648 (732)
..+..+++|++|++++|++.+..+
T Consensus 541 ~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 541 SLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGHHHHHTSSEEECTTCCEECSGG
T ss_pred hhcccCCCCCEEeCCCCCccccCC
Confidence 777778888888888888877554
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.9e-56 Score=514.00 Aligned_cols=525 Identities=21% Similarity=0.194 Sum_probs=451.3
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeC
Q 004747 82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161 (732)
Q Consensus 82 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 161 (732)
.+++.|+++++.+++..+..+.++++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 47899999999999888888999999999999999998766667999999999999999999888889999999999999
Q ss_pred CCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccC--CCCCCCEEEeecccCCCcccccc---------------
Q 004747 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY--YLKSLKHLDLEKNNLTGNVHDFY--------------- 224 (732)
Q Consensus 162 s~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~~~~~--------------- 224 (732)
++| .+.+..|..++++ ++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+
T Consensus 129 s~n-~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 129 SHN-GLSSTKLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp CSS-CCSCCCCCSSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred CCC-cccccCchhhccc-ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence 999 5677778888888 8999999999999877766554 56899999999999987766532
Q ss_pred ---------------ccccEEECCCCcCccccCchhhcccc--cCeeeCCCCccccccchhhhccCCCCEEEeccCCCCC
Q 004747 225 ---------------QSLLVLNLGSNRFSGTLPCFAASAMS--LTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY 287 (732)
Q Consensus 225 ---------------~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 287 (732)
.+|+.|++++|.+++..|..+..++. |++|++++|.+.+..|..++.+++|++|++++|.+++
T Consensus 207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence 34889999999999999999988865 9999999999998888899999999999999999999
Q ss_pred cCccccccCcCCcEEEccCCCCCCC-----Cch----hhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCc
Q 004747 288 EISPRLVFFEKLLLLDLSFNDLSGP-----LPS----KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNN 358 (732)
Q Consensus 288 ~~~~~l~~l~~L~~L~Ls~n~l~~~-----~p~----~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 358 (732)
..|..+..+++|++|++++|...+. +|. .+..+ ++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL---KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC---TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC---CCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 9999999999999999998866542 222 33344 48999999999999888888999999999999999
Q ss_pred cCCCcc-c-cccCC--CCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCc-ccccCCCCCcEEEcccCcee
Q 004747 359 LLIGEI-P-ARIGN--LTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQ-PELDALDSLKILDISNNQIS 433 (732)
Q Consensus 359 ~l~~~~-p-~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 433 (732)
.+.... + ..+.. .++|+.|++++|++++..|..+..+++|+.|++++|.+.+.++ ..+..+++|++|++++|++.
T Consensus 364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence 865432 2 22322 3689999999999999999999999999999999999998665 67899999999999999999
Q ss_pred eeccccCCCCCCCCEEEccCCccc--ccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcc
Q 004747 434 GEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDG 511 (732)
Q Consensus 434 ~~~p~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~ 511 (732)
+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..
T Consensus 444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 523 (680)
T 1ziw_A 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523 (680)
T ss_dssp ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT
T ss_pred eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh
Confidence 888899999999999999999987 567889999999999999999999887888999999999999999997643221
Q ss_pred cccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCc-ccccccCCceee
Q 004747 512 NFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPK-GLFQLQGLEYLN 590 (732)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~ 590 (732)
. .. ........+++|+.|+|++|+++ .+|. .+.++++|++|+
T Consensus 524 ~-~~-----------------------------------~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 524 N-PG-----------------------------------GPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIID 566 (680)
T ss_dssp S-TT-----------------------------------SCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred c-cC-----------------------------------CcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeE
Confidence 1 00 00011234788999999999999 5665 588999999999
Q ss_pred cccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCC-CCCCCCEEEcccCcceeeCC
Q 004747 591 LSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNIS-SLQELTLLNLSYNSFSGFVP 648 (732)
Q Consensus 591 Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~ip 648 (732)
|++|++++..+. +..+++|+.|+|++|++++..|..+. .+++|+.+++++|++.+..+
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999999976666 77899999999999999998888777 78999999999999988655
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-55 Score=516.90 Aligned_cols=546 Identities=21% Similarity=0.149 Sum_probs=400.3
Q ss_pred CCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcc-cccccCCCCCCEEECCCCCCCCCCCc
Q 004747 70 TNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI-STCFGGLSGLKTLDLSYNKFVGVVPD 148 (732)
Q Consensus 70 c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~ 148 (732)
+.|..|.+ ...+++.|+|++|.+++..+.++.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45666666 4568899999999998888888999999999999998766665 77889999999999999999988899
Q ss_pred cccCCCCCCEEeCCCCCCCCCcCCch--hhhcccCCcEEEeeCcccccccC-cccCCCCCCCEEEeecccCCCcccccc-
Q 004747 149 AIMKLRNLRELILKGNPELGGVFPGW--VGNFSMNLEKLDFSFNSFCGEIP-ESLYYLKSLKHLDLEKNNLTGNVHDFY- 224 (732)
Q Consensus 149 ~~~~l~~L~~L~Ls~n~~~~~~~p~~--~~~l~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~- 224 (732)
.|+++++|++|+|++| .+.+.+|.. +.++ ++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFC-GLSDAVLKDGYFRNL-KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp SSCSCSSCCCEECTTC-CCSSCCSTTCCCSSC-SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HccCCcccCEeeCcCC-CCCcccccCcccccc-CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 9999999999999999 556655544 7777 899999999999887654 578899999999999999888776654
Q ss_pred ----ccccEEECCCCcCccccCchhhcccc------cCeeeCCCCccccccchhhhcc---CCCCEEEeccCCC------
Q 004747 225 ----QSLLVLNLGSNRFSGTLPCFAASAMS------LTVLKLDNNSVVGGIPTCIASL---QALTHLNLSHNHL------ 285 (732)
Q Consensus 225 ----~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~L~~n~l------ 285 (732)
.+|+.|++++|.+.+..|..+..+.+ |++|++++|.+.+..+..+... ..++.+.++.+..
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 45888888888888877776666655 8888888888887777666543 5677777763322
Q ss_pred ---CCcCccccccC--cCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccC
Q 004747 286 ---NYEISPRLVFF--EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL 360 (732)
Q Consensus 286 ---~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 360 (732)
.......+..+ ++|+.|++++|.+.+..|..+..+. +|+.|++++|++++..|..+..+++|++|++++|.+
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK---DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC---CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCC---CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence 22222333333 5788888888887766666665555 788888888888777777777888888888888888
Q ss_pred CCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccC
Q 004747 361 IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL 440 (732)
Q Consensus 361 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~ 440 (732)
++..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++. ..+++|+.|++++|+++ .+|..
T Consensus 327 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~- 399 (844)
T 3j0a_A 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI- 399 (844)
T ss_dssp SCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC-
T ss_pred CccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc-
Confidence 777777788888888888888888766666777788888888888877643 23677888888888877 44432
Q ss_pred CCCCCCCEEEccCCcccccc-hhhhhcCCCCCEEEcccCCCccccch-hhhcCCCCCEEEccCCcCcccCCcccccCccc
Q 004747 441 AGLKSLEIVDFSSNNLSGSL-NDAITKWTNLKYFSIARNKLSGNLPN-WLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLN 518 (732)
Q Consensus 441 ~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~ 518 (732)
..+++.|++++|++++.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+.....
T Consensus 400 --~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~---- 473 (844)
T 3j0a_A 400 --NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW---- 473 (844)
T ss_dssp --CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS----
T ss_pred --ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch----
Confidence 456778888888877532 23455778888888888887754432 3455777888888888776432221100
Q ss_pred cCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeeccccccee
Q 004747 519 FNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG 598 (732)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~ 598 (732)
..+..+++|+.|||++|++++..|..+..+++|++|+|++|++++
T Consensus 474 -----------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 474 -----------------------------------DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp -----------------------------------SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred -----------------------------------hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence 011226778888888888887777778888888888888888886
Q ss_pred cCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCCCCCCCcCc-cccCCCCCCCCCCCCCCCC
Q 004747 599 QVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLESSHGECNR 677 (732)
Q Consensus 599 ~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~-~~~gn~~lcg~~~~~~c~~ 677 (732)
.+|.... ++|+.|||++|++++.+|..|. +|+.|++++|++.+..+. ..|.. ...++..+||.+....|..
T Consensus 519 l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~----~~f~~~~~~~~~~~~~~~~~~~C~~ 590 (844)
T 3j0a_A 519 LSHNDLP-ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL----STFINWLNHTNVTIAGPPADIYCVY 590 (844)
T ss_dssp CCCCCCC-SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC----CSHHHHHHHTTTTTCCCGGGCCCSS
T ss_pred cChhhhh-ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc----HHHHHHHHhcCcccccccccCccCC
Confidence 6655222 7888888888888888887654 678888888888776542 12222 2344556667666667765
Q ss_pred C
Q 004747 678 T 678 (732)
Q Consensus 678 ~ 678 (732)
+
T Consensus 591 p 591 (844)
T 3j0a_A 591 P 591 (844)
T ss_dssp C
T ss_pred c
Confidence 4
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.3e-55 Score=501.00 Aligned_cols=508 Identities=21% Similarity=0.218 Sum_probs=419.2
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (732)
Q Consensus 81 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (732)
..++++|+++++.+++..+..+.++++|++|++++|.+++..|..|+++++|++|+|++|.+++..|.+|+++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 35789999999999888788899999999999999999988888899999999999999999988899999999999999
Q ss_pred CCCCCCCCCcCCchhhhcccCCcEEEeeCccccc-ccCcccCCCCCCCEEEeecccCCCcccccccc-------ccEEEC
Q 004747 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS-------LLVLNL 232 (732)
Q Consensus 161 Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-------L~~L~L 232 (732)
+++| .+.+..+..++++ ++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..+.. +++|++
T Consensus 111 L~~n-~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 111 AVET-KLASLESFPIGQL-ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp CTTS-CCCCSSSSCCTTC-TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred ccCC-ccccccccccCCC-CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 9999 5566666778888 899999999999986 56889999999999999999999887775543 348999
Q ss_pred CCCcCccccCchhhcccccCeeeCCCCccc-cccchhhhccCCCCEEEeccCCCCCc------CccccccCc--CCcEEE
Q 004747 233 GSNRFSGTLPCFAASAMSLTVLKLDNNSVV-GGIPTCIASLQALTHLNLSHNHLNYE------ISPRLVFFE--KLLLLD 303 (732)
Q Consensus 233 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~------~~~~l~~l~--~L~~L~ 303 (732)
++|.+++..+..+... +|++|++++|.+. +..|..+++++.|+.+++..+.+.+. .+..+..+. .++.++
T Consensus 189 ~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred cCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 9999986666555544 8999999999886 45677888899999888865544321 111222222 466677
Q ss_pred c-cCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCC
Q 004747 304 L-SFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382 (732)
Q Consensus 304 L-s~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 382 (732)
+ ..|.+.+.+|. +..+. +|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|
T Consensus 268 l~~~~~~~~~~~~-~~~l~---~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 268 LTYTNDFSDDIVK-FHCLA---NVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMN 338 (606)
T ss_dssp ECCCTTCCGGGGS-CGGGT---TCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESC
T ss_pred ccccccccccccc-cccCC---CCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCC
Confidence 7 67778777765 55555 8999999999987 566 788889999999999999 5777 45 8999999999999
Q ss_pred cCccccCccccCCcCcceeeccccccccc--CcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccc
Q 004747 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGE--IQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL 460 (732)
Q Consensus 383 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 460 (732)
...+.+ .+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..
T Consensus 339 ~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 415 (606)
T 3vq2_A 339 KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVT 415 (606)
T ss_dssp SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTT
T ss_pred cCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCcc
Confidence 665544 566888999999999998876 37778889999999999999885 5678889999999999999998877
Q ss_pred h-hhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCccc-CCcccccCccccCcCCCCCCCCCCcccCCCc
Q 004747 461 N-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF-IPDGNFNFSLNFNKSDIGRSMPAKSFVLPRS 538 (732)
Q Consensus 461 ~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (732)
+ ..+..+++|++|++++|++.+..|..+..+++|++|++++|++++. +|.. |.
T Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~------------------------ 470 (606)
T 3vq2_A 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FA------------------------ 470 (606)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CT------------------------
T ss_pred ChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh-hc------------------------
Confidence 7 6788899999999999999988888899999999999999998874 3432 22
Q ss_pred eeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCC
Q 004747 539 MVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHN 617 (732)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N 617 (732)
.+++|+.|++++|++++..|..+.++++|++|+|++|++++.+|. +.++++|++|||++|
T Consensus 471 -------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 471 -------------------NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp -------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred -------------------cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 267889999999999988888899999999999999999988787 888999999999999
Q ss_pred cCcccCCcCCCCCC-CCCEEEcccCcceeeCC
Q 004747 618 SLTGQIPGNISSLQ-ELTLLNLSYNSFSGFVP 648 (732)
Q Consensus 618 ~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip 648 (732)
+++ .+|..+..++ +|++|++++|++.+..+
T Consensus 532 ~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 532 RIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 998 6677788886 59999999999987655
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.2e-54 Score=493.76 Aligned_cols=526 Identities=21% Similarity=0.200 Sum_probs=445.3
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCC
Q 004747 87 INLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPE 166 (732)
Q Consensus 87 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~ 166 (732)
++.++.+++ .+|..+.. .+++|++++|.+++..|..|+++++|++|+|++|.+.+..|.+|+++++|++|+|++| .
T Consensus 17 ~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~ 92 (606)
T 3t6q_A 17 YNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-P 92 (606)
T ss_dssp EECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred EECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-c
Confidence 344444554 45555543 7899999999999888999999999999999999999999999999999999999999 6
Q ss_pred CCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcc-ccc--cccccEEECCCCcCccccCc
Q 004747 167 LGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV-HDF--YQSLLVLNLGSNRFSGTLPC 243 (732)
Q Consensus 167 ~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~--~~~L~~L~L~~n~l~~~~~~ 243 (732)
+.+..|..++.+ ++|++|++++|.+++..|..++++++|++|++++|.+++.. +.. +.+|++|++++|.+++..+.
T Consensus 93 l~~~~~~~~~~l-~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 93 LIFMAETALSGP-KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CSEECTTTTSSC-TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred ccccChhhhccc-ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 777888889998 99999999999999877888999999999999999998853 332 45699999999999988888
Q ss_pred hhhcccccC--eeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCC-----CCchh
Q 004747 244 FAASAMSLT--VLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSG-----PLPSK 316 (732)
Q Consensus 244 ~~~~~~~L~--~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~p~~ 316 (732)
.++.+++|+ +|++++|.+.+..|..+.. .+|++|++++|. .++..+..+.+++...+....+.+ ..+..
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhH
Confidence 899999999 8999999999877776544 689999999886 344555556555544443332221 11223
Q ss_pred hhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCc
Q 004747 317 IAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396 (732)
Q Consensus 317 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~ 396 (732)
+..+... +|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..++
T Consensus 248 ~~~l~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 248 FEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp GGGGGGS-EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred hchhhcC-ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence 3333222 6999999999999877888999999999999999998 7888999999999999999999988888999999
Q ss_pred CcceeecccccccccCcc-cccCCCCCcEEEcccCceeeec--cccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEE
Q 004747 397 QLLALIVNNNNLSGEIQP-ELDALDSLKILDISNNQISGEI--PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYF 473 (732)
Q Consensus 397 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 473 (732)
+|+.|++++|.+.+.++. .+..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..+++|++|
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 999999999999877665 4889999999999999999776 7789999999999999999998889999999999999
Q ss_pred EcccCCCccccch-hhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCc
Q 004747 474 SIARNKLSGNLPN-WLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNE 552 (732)
Q Consensus 474 ~L~~N~l~~~~p~-~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (732)
++++|++.+..|. .+..+++|++|++++|.+.+..|..+ .
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~-------------------------------------- 446 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF-D-------------------------------------- 446 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT-T--------------------------------------
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH-h--------------------------------------
Confidence 9999999977665 48899999999999999987665432 1
Q ss_pred hhhhhhcccceEEEccCCccccc---CCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCC
Q 004747 553 LSFNYQLFSAVGMDLSDNLLHGT---IPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNIS 628 (732)
Q Consensus 553 ~~~~~~l~~L~~LdLs~N~l~g~---ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~ 628 (732)
.+++|++|++++|++++. .+..+..+++|++|++++|++++.+|. +..+++|+.|||++|++++.+|..+.
T Consensus 447 -----~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 521 (606)
T 3t6q_A 447 -----GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521 (606)
T ss_dssp -----TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred -----CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhC
Confidence 277899999999999873 336688999999999999999998888 89999999999999999999999999
Q ss_pred CCCCCCEEEcccCcceeeCCCC-CCCCCcCc-cccCCCCCCC
Q 004747 629 SLQELTLLNLSYNSFSGFVPWK-QGYQKFPG-AFAGNPNLCL 668 (732)
Q Consensus 629 ~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~-~~~gn~~lcg 668 (732)
.++.| +||+++|++++.+|.. ..+..+.. .+.|||..|.
T Consensus 522 ~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 522 HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp TCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred ccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 99999 9999999999887753 22233444 7899998874
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5e-56 Score=508.59 Aligned_cols=501 Identities=18% Similarity=0.225 Sum_probs=297.3
Q ss_pred CHHhHHHHHHHHhcCCCCCC--------CCCCC-CCCCCCCc---cceeecCCCCcEEEEEcCCCCCcccccccccCCCC
Q 004747 40 NLEDKASLLLFKSLVQDPTQ--------KLSSW-VGSNCTNW---TGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSF 107 (732)
Q Consensus 40 ~~~~~~~l~~~k~~~~~~~~--------~l~~w-~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~ 107 (732)
...|++||.+++.++.++.. ..++| .+.+||.| .||+|+. .++|++|+|+++++.|.+|++++++++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCcc
Confidence 35788899999999876521 23489 67899999 9999984 489999999999999999999999999
Q ss_pred CCEEECCCCCC------CC------cccccccCCCCCCEEECCCCCCCCCCCccccC-CCCCCEEeCCCCCCCCCcCCch
Q 004747 108 LEFLVLSSNAF------TG------RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMK-LRNLRELILKGNPELGGVFPGW 174 (732)
Q Consensus 108 L~~L~Ls~n~l------~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~n~~~~~~~p~~ 174 (732)
|++|+|++|.+ .+ .+|... +..|+ +++++|.+.+.+|..+.. +..+..+++...+...
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------ 177 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------ 177 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------
T ss_pred ceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc------
Confidence 99999999976 22 233332 45566 777778887777766652 2222223332211000
Q ss_pred hhhcccCCcEEEe--eCcccccccCcccCCCCCCCEEEeecccCCCc-----------------cccccc-----cccEE
Q 004747 175 VGNFSMNLEKLDF--SFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN-----------------VHDFYQ-----SLLVL 230 (732)
Q Consensus 175 ~~~l~~~L~~L~L--s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~-----~L~~L 230 (732)
... ..++.+.+ ..|.+++ +|..++++++|++|+|++|.+++. +|..+. +|++|
T Consensus 178 -~~~-~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L 254 (636)
T 4eco_A 178 -SSR-ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254 (636)
T ss_dssp -CCC-CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred -ccc-cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence 000 12222222 2466776 777777777777777777777773 333222 25555
Q ss_pred ECCCCcCccccCchhhcccccCeeeCCCCc-ccc-ccchhhhcc------CCCCEEEeccCCCCCcCcc--ccccCcCCc
Q 004747 231 NLGSNRFSGTLPCFAASAMSLTVLKLDNNS-VVG-GIPTCIASL------QALTHLNLSHNHLNYEISP--RLVFFEKLL 300 (732)
Q Consensus 231 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~ 300 (732)
++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .+..+++|+
T Consensus 255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG 333 (636)
T ss_dssp EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred EecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence 555555555666666666666666666666 665 566666555 66666666666666 5555 566666666
Q ss_pred EEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCC-CCEEeccCccCCCccccccCCCC--CCCEE
Q 004747 301 LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS-LQALFLSNNLLIGEIPARIGNLT--YLQVI 377 (732)
Q Consensus 301 ~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L 377 (732)
+|++++|.++|.+| .+..+. +|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|
T Consensus 334 ~L~L~~N~l~g~ip-~~~~l~---~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L 407 (636)
T 4eco_A 334 MLECLYNQLEGKLP-AFGSEI---KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI 407 (636)
T ss_dssp EEECCSCCCEEECC-CCEEEE---EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEE
T ss_pred EEeCcCCcCccchh-hhCCCC---CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEE
Confidence 66666666666666 444444 5666666666666 56666666666 666666666666 5555555443 56666
Q ss_pred EccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCccc
Q 004747 378 DLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457 (732)
Q Consensus 378 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 457 (732)
++++|.+++.+|..+..+. .....+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 408 ~Ls~N~l~~~~p~~l~~~~-----------------~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 408 DFSYNEIGSVDGKNFDPLD-----------------PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp ECCSSCTTTTTTCSSCTTC-----------------SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ECcCCcCCCcchhhhcccc-----------------cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 6666666665555544000 00003445555555555555222222334555555555555555
Q ss_pred ccchhh-hhc-------CCCCCEEEcccCCCccccchhhh--cCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCC
Q 004747 458 GSLNDA-ITK-------WTNLKYFSIARNKLSGNLPNWLF--SFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRS 527 (732)
Q Consensus 458 ~~~~~~-~~~-------l~~L~~L~L~~N~l~~~~p~~~~--~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~ 527 (732)
.+|.. +.. +++|++|++++|+++ .+|..+. .+++|+.|++++|++++ +|..++
T Consensus 471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~-------------- 533 (636)
T 4eco_A 471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL-------------- 533 (636)
T ss_dssp -BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG--------------
T ss_pred -CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhh--------------
Confidence 23222 221 226666666666666 5565554 56666666666666654 443321
Q ss_pred CCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCc
Q 004747 528 MPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRL 606 (732)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l 606 (732)
.+++|+.|+|++|+ ++++|++.+.+|. +.++
T Consensus 534 ------------------------------~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l 565 (636)
T 4eco_A 534 ------------------------------NSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITLC 565 (636)
T ss_dssp ------------------------------GCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGGC
T ss_pred ------------------------------cCCCCCEEECCCCc------------------ccccCcccccChHHHhcC
Confidence 14455555554443 3345555555554 5555
Q ss_pred cCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCccee
Q 004747 607 RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG 645 (732)
Q Consensus 607 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 645 (732)
++|++|||++|++ +.+|..+. ++|++||+++|++..
T Consensus 566 ~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 566 PSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp SSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 5666666666666 35555444 566666666665553
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-53 Score=487.99 Aligned_cols=524 Identities=20% Similarity=0.184 Sum_probs=445.6
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCC
Q 004747 86 SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165 (732)
Q Consensus 86 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 165 (732)
.++.++.+++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|+|++|
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n- 90 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN- 90 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-
Confidence 3556666665 4555554 79999999999999888889999999999999999999988999999999999999999
Q ss_pred CCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCC-cccccc---ccccEEECCCCcCcccc
Q 004747 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NVHDFY---QSLLVLNLGSNRFSGTL 241 (732)
Q Consensus 166 ~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~~---~~L~~L~L~~n~l~~~~ 241 (732)
.+.+..|..++++ ++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..+ .+|++|++++|.+++..
T Consensus 91 ~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 91 PIQSFSPGSFSGL-TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCTTSSTTC-TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred cccccChhhcCCc-ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 5777889999999 999999999999998877889999999999999999986 446644 56999999999999988
Q ss_pred CchhhcccccC----eeeCCCCccccccchhhhccCCCCEEEeccCCCC-CcCccccccCcCCcEEEccCCCCCC-----
Q 004747 242 PCFAASAMSLT----VLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN-YEISPRLVFFEKLLLLDLSFNDLSG----- 311 (732)
Q Consensus 242 ~~~~~~~~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~----- 311 (732)
+..+..+++|+ +|++++|.+++..+..+... +|++|++++|.++ +..|..+..++.|+.+++..+.+.+
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 88888887776 79999999997666655544 8999999999987 4567788999999999887654432
Q ss_pred -CCchhhhhcCCCCCccEEeC-CCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccC
Q 004747 312 -PLPSKIAQTTEKAGLVLLDL-SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP 389 (732)
Q Consensus 312 -~~p~~~~~l~~~~~L~~L~L-s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 389 (732)
..+..+..+... .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+ +.+|
T Consensus 249 ~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp 323 (606)
T 3vq2_A 249 IFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP 323 (606)
T ss_dssp CCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC
T ss_pred ccChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc
Confidence 112222233322 5778888 77888888887 899999999999999997 566 789999999999999999 6888
Q ss_pred ccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeee--ccccCCCCCCCCEEEccCCcccccchhhhhcC
Q 004747 390 LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE--IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKW 467 (732)
Q Consensus 390 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 467 (732)
.+ .+++|+.|++++|...+.. .+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++ +|..+..+
T Consensus 324 -~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l 398 (606)
T 3vq2_A 324 -TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGL 398 (606)
T ss_dssp -CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTC
T ss_pred -cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCC
Confidence 45 9999999999999766544 567899999999999999976 37788999999999999999985 56788999
Q ss_pred CCCCEEEcccCCCccccc-hhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEE
Q 004747 468 TNLKYFSIARNKLSGNLP-NWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVT 546 (732)
Q Consensus 468 ~~L~~L~L~~N~l~~~~p-~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (732)
++|++|++++|++.+..| ..+..+++|++|++++|.+++..|..+ .
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~-------------------------------- 445 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF-L-------------------------------- 445 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT-T--------------------------------
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh-c--------------------------------
Confidence 999999999999998877 688999999999999999987766542 1
Q ss_pred eecCCchhhhhhcccceEEEccCCccccc-CCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCC
Q 004747 547 AIDTNELSFNYQLFSAVGMDLSDNLLHGT-IPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIP 624 (732)
Q Consensus 547 ~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip 624 (732)
.+++|++|++++|++++. +|..+..+++|++|++++|++++.+|. +.++++|++|+|++|++++.+|
T Consensus 446 -----------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 446 -----------GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp -----------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred -----------CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 277899999999999984 788999999999999999999998888 8999999999999999999999
Q ss_pred cCCCCCCCCCEEEcccCcceeeCCCC-CCCC-CcCc-cccCCCCCCCCC
Q 004747 625 GNISSLQELTLLNLSYNSFSGFVPWK-QGYQ-KFPG-AFAGNPNLCLES 670 (732)
Q Consensus 625 ~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~-~~~~-~~~gn~~lcg~~ 670 (732)
..+..+++|++||+++|+++. +|.. ..+. .+.. .+.|||..|..+
T Consensus 515 ~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp GGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred HHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999999999999999995 5544 2222 2344 789999998644
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-53 Score=500.26 Aligned_cols=521 Identities=22% Similarity=0.235 Sum_probs=439.0
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCC-CccccCCCCCCEEeCCCCC
Q 004747 87 INLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELILKGNP 165 (732)
Q Consensus 87 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~ 165 (732)
.+.++++++ .+|. ..+++++|||++|.+++..+..|.++++|++|||++|.+.+.+ |.+|.++++|++|+|++|
T Consensus 9 ~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N- 83 (844)
T 3j0a_A 9 AFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS- 83 (844)
T ss_dssp EEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-
T ss_pred EEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-
Confidence 455666776 3444 4579999999999999888999999999999999999766555 889999999999999999
Q ss_pred CCCCcCCchhhhcccCCcEEEeeCcccccccCcc--cCCCCCCCEEEeecccCCCcccc----ccccccEEECCCCcCcc
Q 004747 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPES--LYYLKSLKHLDLEKNNLTGNVHD----FYQSLLVLNLGSNRFSG 239 (732)
Q Consensus 166 ~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~~~----~~~~L~~L~L~~n~l~~ 239 (732)
.+.+..|..+.++ ++|++|+|++|.+++.+|.. +.++++|++|+|++|.+++..+. .+.+|++|++++|.+++
T Consensus 84 ~l~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGL-FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSC-SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCC-cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 6778889999999 99999999999999877765 89999999999999999887542 34569999999999999
Q ss_pred ccCchhhcc--cccCeeeCCCCccccccchhhhccCC------CCEEEeccCCCCCcCccccccC---cCCcEEEccCCC
Q 004747 240 TLPCFAASA--MSLTVLKLDNNSVVGGIPTCIASLQA------LTHLNLSHNHLNYEISPRLVFF---EKLLLLDLSFND 308 (732)
Q Consensus 240 ~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~Ls~n~ 308 (732)
..+..+..+ ++|+.|++++|.+.+..|..++.+++ |++|++++|.+++..+..+... .+++.+.++.+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 888888877 89999999999999888877766665 9999999999988877766543 678888887433
Q ss_pred ---------CCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEc
Q 004747 309 ---------LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDL 379 (732)
Q Consensus 309 ---------l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 379 (732)
+.+..+..+..+. .++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..|..+++|++|++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLA-RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTT-TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred ccccccccccCCCChhhhhccc-cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 3222222333321 248999999999999888889999999999999999999888889999999999999
Q ss_pred cCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCccccc
Q 004747 380 SHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS 459 (732)
Q Consensus 380 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 459 (732)
++|.+++..|..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+++ + ..+++|+.|++++|+++ .
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~-~ 395 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLV-T 395 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCC-C
T ss_pred CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCcc-c
Confidence 9999998889999999999999999999998888889999999999999999984 2 23789999999999998 4
Q ss_pred chhhhhcCCCCCEEEcccCCCcccc-chhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCc
Q 004747 460 LNDAITKWTNLKYFSIARNKLSGNL-PNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRS 538 (732)
Q Consensus 460 ~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (732)
+|.. ..+++.|++++|++.+.. +..+..+++|+.|++++|++++..+...+.
T Consensus 396 l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------ 448 (844)
T 3j0a_A 396 LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS------------------------ 448 (844)
T ss_dssp CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC------------------------
T ss_pred cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc------------------------
Confidence 4433 568999999999998643 344668999999999999998654432211
Q ss_pred eeEEeEEEeecCCchhhhhhcccceEEEccCCccc-----ccCCcccccccCCceeecccccceecCCc-ccCccCCcEE
Q 004747 539 MVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLH-----GTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRAL 612 (732)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~L 612 (732)
.+++|+.|++++|.++ +..|..+..+++|++|+|++|++++.+|. +..+++|+.|
T Consensus 449 -------------------~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 509 (844)
T 3j0a_A 449 -------------------ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509 (844)
T ss_dssp -------------------SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEE
T ss_pred -------------------cCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhee
Confidence 1678899999999997 44556788999999999999999988888 8899999999
Q ss_pred eCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCCCCCCCcCc-cccCCCCCCCCC
Q 004747 613 DLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLES 670 (732)
Q Consensus 613 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~-~~~gn~~lcg~~ 670 (732)
||++|++++..|..+. ++|++||+++|+++|.+|.. +..+.. .+.|||..|..+
T Consensus 510 ~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 510 SLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp EEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred ECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 9999999988888776 89999999999999999864 445555 889999999654
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3e-54 Score=501.31 Aligned_cols=499 Identities=19% Similarity=0.213 Sum_probs=276.9
Q ss_pred CHHhHHHHHHHHhcCCCCCCCCCCCC--C----CCC--CCc------------cceeecCCCCcEEEEEcCCCCCccccc
Q 004747 40 NLEDKASLLLFKSLVQDPTQKLSSWV--G----SNC--TNW------------TGVACNFQTGHVVSINLTDTSLSGQVH 99 (732)
Q Consensus 40 ~~~~~~~l~~~k~~~~~~~~~l~~w~--~----~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~l~~~~~ 99 (732)
..+|++||++||+++.+| +|. + .+| |.| .||.|+. .++|++|+|+++++.|.+|
T Consensus 267 ~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip 340 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVP 340 (876)
T ss_dssp HHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEEC
T ss_pred chHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCc
Confidence 457888999999999876 682 2 245 999 9999985 7899999999999999999
Q ss_pred ccccCCCCCCEEEC-CCCCCCCcccccccCCC-CCCE--------------EEC-CCCCCCC-----------CCCcccc
Q 004747 100 PRLCKLSFLEFLVL-SSNAFTGRISTCFGGLS-GLKT--------------LDL-SYNKFVG-----------VVPDAIM 151 (732)
Q Consensus 100 ~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~l~-~L~~--------------L~L-s~n~l~~-----------~~p~~~~ 151 (732)
+++++|++|++|+| ++|.+.|..+....... .+.. ++. ....+.+ ..+....
T Consensus 341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~ 420 (876)
T 4ecn_A 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420 (876)
T ss_dssp GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence 99999999999999 88888766332111110 0000 000 0000000 0011111
Q ss_pred CCCCCCEEeCCC--CCCCCCcCCchhhhcccCCcEEEeeCccccc-----------------ccCcccC--CCCCCCEEE
Q 004747 152 KLRNLRELILKG--NPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-----------------EIPESLY--YLKSLKHLD 210 (732)
Q Consensus 152 ~l~~L~~L~Ls~--n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~~L~~L~ 210 (732)
....++.+.+.. | .+++ +|..++++ ++|++|+|++|.+++ .+|..++ ++++|++|+
T Consensus 421 ~~l~l~~l~l~~~~N-~L~~-IP~~l~~L-~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 421 SRISLKDTQIGNLTN-RITF-ISKAIQRL-TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCTTTTTCCSC-EEEE-ECGGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred cccchhhceeccccC-cccc-hhHHHhcC-CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 222333333333 3 3444 66667776 677777777777776 4777766 777777777
Q ss_pred eecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCc-ccc-ccchhhhccC-------CCCEEEec
Q 004747 211 LEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS-VVG-GIPTCIASLQ-------ALTHLNLS 281 (732)
Q Consensus 211 Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-l~~-~~~~~l~~l~-------~L~~L~L~ 281 (732)
|++|.+.+ .+|..+.++++|++|++++|+ +++ .+|..++.++ +|++|+++
T Consensus 498 Ls~N~l~~---------------------~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 498 LYNCPNMT---------------------QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp EESCTTCC---------------------SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred CcCCCCCc---------------------cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence 77766544 455555566666666666665 655 5666555554 66666666
Q ss_pred cCCCCCcCcc--ccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCC-CCEEeccCc
Q 004747 282 HNHLNYEISP--RLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS-LQALFLSNN 358 (732)
Q Consensus 282 ~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~Ls~n 358 (732)
+|.++ .+|. .+..+++|+.|++++|.++ .+| .+..++ +|+.|++++|.++ .+|..+..+++ |+.|++++|
T Consensus 557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~---~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 557 YNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV---KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp SSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS---EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred CCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC---cceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence 66666 5555 5666666666666666666 555 344333 6666666666666 56666666666 666666666
Q ss_pred cCCCccccccCCCCC--CCEEEccCCcCccccCccc---c--CCcCcceeecccccccccCcccccCCCCCcEEEcccCc
Q 004747 359 LLIGEIPARIGNLTY--LQVIDLSHNMLSGSIPLNI---V--GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQ 431 (732)
Q Consensus 359 ~l~~~~p~~l~~l~~--L~~L~Ls~n~l~~~~p~~~---~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 431 (732)
.++ .+|..+..++. |+.|++++|.+.+.+|... . .+.+|+.|++++|.+....+..+..+++|+.|++++|+
T Consensus 630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 666 55655555443 6666776666665544221 1 12234444444444442222222344444444444444
Q ss_pred eeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhh--cCCCCCEEEccCCcCcccCC
Q 004747 432 ISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF--SFQAIQMMDFSTNKFMGFIP 509 (732)
Q Consensus 432 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~~~~L~~L~ls~N~l~~~~p 509 (732)
++ .+|..+..... ....++++|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|
T Consensus 709 L~-~ip~~~~~~~~----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp 769 (876)
T 4ecn_A 709 MT-SIPENSLKPKD----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FP 769 (876)
T ss_dssp CS-CCCTTSSSCTT----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred CC-ccChHHhcccc----------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cc
Confidence 44 33322111100 00001124555555555555 4444443 45555555555555443 33
Q ss_pred cccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccC------CcccccCCcccccc
Q 004747 510 DGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSD------NLLHGTIPKGLFQL 583 (732)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~------N~l~g~ip~~l~~l 583 (732)
..++ .+++|+.|+|++ |++.+.+|..+.++
T Consensus 770 ~~l~--------------------------------------------~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 770 TQPL--------------------------------------------NSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp CGGG--------------------------------------------GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred hhhh--------------------------------------------cCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 3221 134444444444 55555555555555
Q ss_pred cCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCc
Q 004747 584 QGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNS 642 (732)
Q Consensus 584 ~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~ 642 (732)
++|+.|+|++|++ +.+|. +. ++|+.|||++|++....+..+.....+..+.+.+|+
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred CCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 5555555555555 34554 33 355555555555554444444333334444444443
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.7e-51 Score=460.62 Aligned_cols=491 Identities=18% Similarity=0.174 Sum_probs=366.5
Q ss_pred CCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCc
Q 004747 69 CTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPD 148 (732)
Q Consensus 69 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 148 (732)
.|.|.|+ |+. ++++++ .+|..+. ++|++|++++|++++..|..|.++++|++|++++|++++..|.
T Consensus 3 ~C~~~~~-c~~----------~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EEC----------TTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EEC----------CCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 3889888 863 344554 4565554 7899999999999988888999999999999999999988889
Q ss_pred cccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCccccc-ccCcccCCCCCCCEEEeecccCCCccc-cc---
Q 004747 149 AIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVH-DF--- 223 (732)
Q Consensus 149 ~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~--- 223 (732)
+|+++++|++|++++| .+.+..|..++.+ ++|++|++++|.+++ ..|..++++++|++|++++|.+.+.++ ..
T Consensus 69 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDN-HLSSLSSSWFGPL-SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp TTTTCTTCCEEECTTS-CCCSCCHHHHTTC-TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hccccccCCEEECCCC-ccCccCHHHhccC-CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence 9999999999999999 5677777778888 899999999999986 457789999999999999998544433 33
Q ss_pred cccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchh-hhccCCCCEEEeccCCCCCcC---ccccccCcCC
Q 004747 224 YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC-IASLQALTHLNLSHNHLNYEI---SPRLVFFEKL 299 (732)
Q Consensus 224 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L 299 (732)
+.+|++|++++|.+++..|..+..+++|++|++++|.+.. +|.. +..+++|++|++++|.+++.. ......+++|
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 225 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcc
Confidence 3447777777777777777777777788888888777653 3433 345777888888877776532 1122345667
Q ss_pred cEEEccCCCCCCCCchhhhhc-CCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEE
Q 004747 300 LLLDLSFNDLSGPLPSKIAQT-TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVID 378 (732)
Q Consensus 300 ~~L~Ls~n~l~~~~p~~~~~l-~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 378 (732)
+.|++++|.+++..+..+... ...++|+.+++++|.+.+..... . .....+..+++|+.++
T Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~-----~-------------~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN-----P-------------SESDVVSELGKVETVT 287 (549)
T ss_dssp CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC-----C-------------CTTTCCCCCTTCCEEE
T ss_pred cceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc-----c-------------cchhhhhhhccccccc
Confidence 777777776665444333221 12235666666666554321000 0 0011233455556666
Q ss_pred ccCCcCccc-----cCccccCCcCcceeecccccccccCcccc-cCCCCCcEEEcccCceeeecc---ccCCCCCCCCEE
Q 004747 379 LSHNMLSGS-----IPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNNQISGEIP---LTLAGLKSLEIV 449 (732)
Q Consensus 379 Ls~n~l~~~-----~p~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L 449 (732)
+.++.+... ++..+....+|+.|++++|.+.. +|..+ ..+++|++|++++|++++.+| ..+..+++|++|
T Consensus 288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L 366 (549)
T 2z81_A 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366 (549)
T ss_dssp EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred ccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEE
Confidence 655554321 12222334577778888877763 44443 578999999999999988764 347788999999
Q ss_pred EccCCcccccch--hhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCC
Q 004747 450 DFSSNNLSGSLN--DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRS 527 (732)
Q Consensus 450 ~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~ 527 (732)
++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|...
T Consensus 367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--------------- 429 (549)
T 2z81_A 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--------------- 429 (549)
T ss_dssp ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS---------------
T ss_pred EccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh---------------
Confidence 999999986543 56888999999999999998 688888999999999999999863 33221
Q ss_pred CCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCcc
Q 004747 528 MPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLR 607 (732)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~ 607 (732)
.+.|++||+++|++++.+ ..+++|++|+|++|+++ .+|....++
T Consensus 430 -------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~ 473 (549)
T 2z81_A 430 -------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFP 473 (549)
T ss_dssp -------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCT
T ss_pred -------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCcccCc
Confidence 346889999999999643 47899999999999998 788877899
Q ss_pred CCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCC
Q 004747 608 SLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 648 (732)
Q Consensus 608 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 648 (732)
+|++|||++|++++.+|..+..+++|++|++++|++.+..|
T Consensus 474 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 99999999999999999999999999999999999998877
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-49 Score=452.05 Aligned_cols=488 Identities=20% Similarity=0.189 Sum_probs=349.7
Q ss_pred CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747 107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186 (732)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~ 186 (732)
++++|++++|.+++..+.+|.++++|++|+|++|++++..|.+|+++++|++|+|++| .+.+..|..+..+ ++|++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGL-SSLQKLV 106 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTC-TTCCEEE
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCc-ccccccc
Confidence 4555666666655555555555666666666666555555555555666666666655 3444444555555 5566666
Q ss_pred eeCcccccccCcccCCCCCCCEEEeecccCCCc-ccccc---ccccEEECCCCcCccccCchhhccccc----CeeeCCC
Q 004747 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN-VHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSL----TVLKLDN 258 (732)
Q Consensus 187 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L----~~L~Ls~ 258 (732)
+++|.+++..+..++++++|++|++++|.+++. .|..+ .+|++|++++|.+++..+..+..+++| +.|++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 666655544333455566666666666655542 23322 335555666665555555556666666 5666666
Q ss_pred CccccccchhhhccCCCCEEEeccCCCCC-cCccccccCcCCcEEEccCCCCC------CCCchhhhhcCCCCCccEEeC
Q 004747 259 NSVVGGIPTCIASLQALTHLNLSHNHLNY-EISPRLVFFEKLLLLDLSFNDLS------GPLPSKIAQTTEKAGLVLLDL 331 (732)
Q Consensus 259 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~------~~~p~~~~~l~~~~~L~~L~L 331 (732)
|.+.+..|..+... +|++|++++|.... .++..+..++.++...+....+. ......+..+... .++.+++
T Consensus 187 n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l 264 (570)
T 2z63_A 187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL-TIEEFRL 264 (570)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS-EEEEEEE
T ss_pred CCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc-chhhhhh
Confidence 66665555555444 56666666653321 23344445555554444322111 1111122222221 4777888
Q ss_pred CCC-cccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccc
Q 004747 332 SHN-RFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG 410 (732)
Q Consensus 332 s~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 410 (732)
+++ .+.+..|..+..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccc
Confidence 887 777788888888999999999999988 578888888 9999999999987 5665 477889999999999887
Q ss_pred cCcccccCCCCCcEEEcccCceeeec--cccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccc-hh
Q 004747 411 EIQPELDALDSLKILDISNNQISGEI--PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP-NW 487 (732)
Q Consensus 411 ~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~ 487 (732)
..+. ..+++|++|++++|.+++.. +..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..| ..
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 7665 67899999999999998654 67788899999999999999865554 8889999999999999987766 56
Q ss_pred hhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEc
Q 004747 488 LFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDL 567 (732)
Q Consensus 488 ~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 567 (732)
+..+++|++|++++|.+.+..|..+ . .+++|+.|++
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~-~-------------------------------------------~l~~L~~L~l 452 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIF-N-------------------------------------------GLSSLEVLKM 452 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTT-T-------------------------------------------TCTTCCEEEC
T ss_pred hhcCCCCCEEeCcCCcccccchhhh-h-------------------------------------------cCCcCcEEEC
Confidence 8889999999999999987665432 1 2778999999
Q ss_pred cCCccc-ccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCccee
Q 004747 568 SDNLLH-GTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG 645 (732)
Q Consensus 568 s~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 645 (732)
++|.++ +.+|..+..+++|++|++++|++++.+|. +.++++|++|++++|++++.+|..|..+++|++|++++|+++|
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 999998 67999999999999999999999998887 8899999999999999999999999999999999999999999
Q ss_pred eCCCC
Q 004747 646 FVPWK 650 (732)
Q Consensus 646 ~ip~~ 650 (732)
.+|..
T Consensus 533 ~~~~~ 537 (570)
T 2z63_A 533 SCPRI 537 (570)
T ss_dssp CTTTT
T ss_pred CCcch
Confidence 98854
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-48 Score=439.49 Aligned_cols=487 Identities=22% Similarity=0.215 Sum_probs=416.6
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (732)
Q Consensus 81 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (732)
..+++.|+++++.+++..+.++.++++|++|++++|++++..+..|+++++|++|+|++|.+++..|.+|+++++|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 45799999999999988888999999999999999999988888999999999999999999988889999999999999
Q ss_pred CCCCCCCCCcCCchhhhcccCCcEEEeeCccccc-ccCcccCCCCCCCEEEeecccCCCccccccc---cc----cEEEC
Q 004747 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SL----LVLNL 232 (732)
Q Consensus 161 Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~---~L----~~L~L 232 (732)
+++| .+.+..+..++++ ++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..+. +| +.|++
T Consensus 107 L~~n-~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVET-NLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTS-CCCCSTTCSCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred cccc-ccccCCCcccccc-ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 9999 4555555567888 899999999999987 4799999999999999999999988776554 36 89999
Q ss_pred CCCcCccccCchhhcccccCeeeCCCCcccc-ccchhhhccCCCCEEEeccCCCCC------cCccccccCc--CCcEEE
Q 004747 233 GSNRFSGTLPCFAASAMSLTVLKLDNNSVVG-GIPTCIASLQALTHLNLSHNHLNY------EISPRLVFFE--KLLLLD 303 (732)
Q Consensus 233 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~------~~~~~l~~l~--~L~~L~ 303 (732)
++|.+++..|..+... +|+.|++++|.... .++..+..++.++.+.+....+.. .....+..++ .++.++
T Consensus 185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 9999998888777765 89999999985432 356677888888877765433221 1112233333 356778
Q ss_pred ccCC-CCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCC
Q 004747 304 LSFN-DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382 (732)
Q Consensus 304 Ls~n-~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 382 (732)
++++ .+.+..|..+..+. +|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|
T Consensus 264 l~~~~~~~~~~~~~~~~l~---~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n 335 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLT---NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSN 335 (570)
T ss_dssp EEETTEEESCSTTTTGGGT---TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESC
T ss_pred hhcchhhhhhchhhhcCcC---cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCC
Confidence 8877 67777888887777 8999999999998 688888888 9999999999998 6665 57899999999999
Q ss_pred cCccccCccccCCcCcceeecccccccccC--cccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccc
Q 004747 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEI--QPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL 460 (732)
Q Consensus 383 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 460 (732)
.+.+..+. ..+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..
T Consensus 336 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 336 KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT
T ss_pred cccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc
Confidence 98876665 68899999999999998764 67788999999999999999966554 899999999999999999776
Q ss_pred h-hhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCc-ccCCcccccCccccCcCCCCCCCCCCcccCCCc
Q 004747 461 N-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM-GFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRS 538 (732)
Q Consensus 461 ~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (732)
+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+ .
T Consensus 413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~-~------------------------ 467 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-T------------------------ 467 (570)
T ss_dssp TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC-T------------------------
T ss_pred chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh-h------------------------
Confidence 5 56889999999999999999999999999999999999999997 4566432 1
Q ss_pred eeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCC
Q 004747 539 MVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHN 617 (732)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N 617 (732)
.+++|+.||+++|++++..|..+.++++|++|++++|++++.+|. +.++++|+.|++++|
T Consensus 468 -------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 468 -------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp -------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -------------------cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 278899999999999988899999999999999999999988887 889999999999999
Q ss_pred cCcccCCc
Q 004747 618 SLTGQIPG 625 (732)
Q Consensus 618 ~l~~~ip~ 625 (732)
.+++..|.
T Consensus 529 ~~~~~~~~ 536 (570)
T 2z63_A 529 PWDCSCPR 536 (570)
T ss_dssp CBCCCTTT
T ss_pred cccCCCcc
Confidence 99987764
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.6e-49 Score=450.24 Aligned_cols=460 Identities=19% Similarity=0.256 Sum_probs=332.5
Q ss_pred CCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCC-----CC------cCCchhhhcccCCcEEEeeCcccccccCc
Q 004747 130 SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL-----GG------VFPGWVGNFSMNLEKLDFSFNSFCGEIPE 198 (732)
Q Consensus 130 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~-----~~------~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~ 198 (732)
.+++.|+|++|.+.|.+|.+|+++++|++|+|++|... .+ .+|... + ..|+ +++++|.+.+.+|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~-~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--K-QKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--H-HHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--H-HHHH-hhHHHhhhccCchh
Confidence 47889999999999999999999999999999999431 11 333333 2 3455 66666666665555
Q ss_pred ccCCC-CCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCC--CCccccccchhhhccCCC
Q 004747 199 SLYYL-KSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLD--NNSVVGGIPTCIASLQAL 275 (732)
Q Consensus 199 ~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls--~n~l~~~~~~~l~~l~~L 275 (732)
.+..+ ..+..+++....+. ......++.+.+. .|++++ +|..++++++|
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~---------------------------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L 208 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIK---------------------------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKL 208 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCC---------------------------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTC
T ss_pred hHHHHHHHHhhcCccccccc---------------------------cccccchhhhhhccccCCCcc-CCHHHhcccCC
Confidence 44311 11111111111110 0011122223222 356665 66666666666
Q ss_pred CEEEeccCCCCCc-----------------Cccccc--cCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCc-
Q 004747 276 THLNLSHNHLNYE-----------------ISPRLV--FFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNR- 335 (732)
Q Consensus 276 ~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~- 335 (732)
++|++++|.+++. +|+.++ ++++|++|++++|.+.+.+|..+..++ +|++|++++|+
T Consensus 209 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~---~L~~L~Ls~n~~ 285 (636)
T 4eco_A 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP---EMQLINVACNRG 285 (636)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS---SCCEEECTTCTT
T ss_pred CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC---CCCEEECcCCCC
Confidence 6666666666664 666666 677777777777776666666666555 67777777776
Q ss_pred ccC-CCcccccCC------CCCCEEeccCccCCCcccc--ccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccc
Q 004747 336 FSG-EIPLKITEL------KSLQALFLSNNLLIGEIPA--RIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN 406 (732)
Q Consensus 336 l~~-~~p~~l~~l------~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 406 (732)
+++ .+|..+..+ ++|++|++++|+++ .+|. .++++++|++|++++|.++|.+| .+..+++|+.|++++|
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence 666 566666554 77777777777777 6666 67777777777777777777777 7777777777777777
Q ss_pred cccccCcccccCCCC-CcEEEcccCceeeeccccCCCCC--CCCEEEccCCcccccchhhhh-------cCCCCCEEEcc
Q 004747 407 NLSGEIQPELDALDS-LKILDISNNQISGEIPLTLAGLK--SLEIVDFSSNNLSGSLNDAIT-------KWTNLKYFSIA 476 (732)
Q Consensus 407 ~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~-------~l~~L~~L~L~ 476 (732)
.++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|.+++.+|..+. .+++|++|+++
T Consensus 364 ~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 364 QIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp EEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred ccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence 777 66667778888 888888888888 7777776654 889999999999888888777 77889999999
Q ss_pred cCCCccccchh-hhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhh
Q 004747 477 RNKLSGNLPNW-LFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSF 555 (732)
Q Consensus 477 ~N~l~~~~p~~-~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (732)
+|+++ .+|.. +..+++|++|++++|+++ .+|...+.... ..
T Consensus 442 ~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~------------------------------------~~ 483 (636)
T 4eco_A 442 NNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN------------------------------------EN 483 (636)
T ss_dssp SSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT------------------------------------EE
T ss_pred CCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc------------------------------------cc
Confidence 99998 45544 556899999999999998 67766543200 00
Q ss_pred hhhcccceEEEccCCcccccCCcccc--cccCCceeecccccceecCCc-ccCccCCcEEeC------CCCcCcccCCcC
Q 004747 556 NYQLFSAVGMDLSDNLLHGTIPKGLF--QLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDL------SHNSLTGQIPGN 626 (732)
Q Consensus 556 ~~~l~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdL------s~N~l~~~ip~~ 626 (732)
..++++|+.|+|++|+++ .+|..+. .+++|++|+|++|++++ +|. ++++++|++|+| ++|++.+.+|..
T Consensus 484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence 112558999999999999 8999987 99999999999999997 776 889999999999 568899999999
Q ss_pred CCCCCCCCEEEcccCcceeeCCCCCCCCCcCc-cccCCCCCCCCC
Q 004747 627 ISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLES 670 (732)
Q Consensus 627 l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~-~~~gn~~lcg~~ 670 (732)
+..+++|++||+++|++ +.||.... ..+.. .+.+|+..|...
T Consensus 562 l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 562 ITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCEEEC
T ss_pred HhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCccccH
Confidence 99999999999999999 88887633 44555 789999887553
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-48 Score=435.64 Aligned_cols=459 Identities=20% Similarity=0.195 Sum_probs=304.3
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCC
Q 004747 85 VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164 (732)
Q Consensus 85 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 164 (732)
+.+++++++++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46899999998 5777666 89999999999999888889999999999999999999888999999999999999999
Q ss_pred CCCCCcCCchhhhcccCCcEEEeeCccccc-ccCcccCCCCCCCEEEeecccCCCccccccccc--cEEECCCCcC--cc
Q 004747 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL--LVLNLGSNRF--SG 239 (732)
Q Consensus 165 ~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L--~~L~L~~n~l--~~ 239 (732)
+ ++ .+|.. .+ ++|++|++++|.+++ .+|..++++++|++|++++|.+++.....+.+| ++|++++|.+ .+
T Consensus 80 ~-l~-~lp~~--~l-~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 80 K-LV-KISCH--PT-VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp C-CC-EEECC--CC-CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred c-ee-ecCcc--cc-CCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccc
Confidence 4 44 46655 55 899999999999987 578899999999999999999886544445555 7777777766 55
Q ss_pred ccCchhhccc-ccCeeeCCCCccccccch-hhhccCCCCEEEeccCC-------CCCcCccccccCcCCcEEEccCCCCC
Q 004747 240 TLPCFAASAM-SLTVLKLDNNSVVGGIPT-CIASLQALTHLNLSHNH-------LNYEISPRLVFFEKLLLLDLSFNDLS 310 (732)
Q Consensus 240 ~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~Ls~n~l~ 310 (732)
..|..+..+. ....+++++|.+.+.++. .+.++++|+.|++++|. +.+.++ .+..+++|+.|++++|.++
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence 5555554433 222445555555443332 34445555555555554 333232 3444444444444444443
Q ss_pred CCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCcccccc-----CCCCCCCEEEccCCcCc
Q 004747 311 GPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-----GNLTYLQVIDLSHNMLS 385 (732)
Q Consensus 311 ~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~ 385 (732)
+..+..+.. .+ ..++|++|++++|.++|.+|..+ +++++|+.+++++|.+
T Consensus 234 ~~~~~~~~~-----------------------~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~- 288 (520)
T 2z7x_B 234 WNSFIRILQ-----------------------LV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF- 288 (520)
T ss_dssp HHHHHHHHH-----------------------HH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred HHHHHHHHH-----------------------Hh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence 221111111 11 12466666666666666666666 6777777777777776
Q ss_pred cccC-ccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhh
Q 004747 386 GSIP-LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI 464 (732)
Q Consensus 386 ~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 464 (732)
.+| ..+..+ ....+|+.|++++|.+.... .+..+++|++|++++|++++.+|.++
T Consensus 289 -~~p~~~~~~~---------------------~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~ 344 (520)
T 2z7x_B 289 -GFPQSYIYEI---------------------FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC 344 (520)
T ss_dssp -CSCTHHHHHH---------------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred -ecchhhhhcc---------------------cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh
Confidence 344 222221 00123444444444443211 11345555555555555555555555
Q ss_pred hcCCCCCEEEcccCCCcc--ccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEE
Q 004747 465 TKWTNLKYFSIARNKLSG--NLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIR 542 (732)
Q Consensus 465 ~~l~~L~~L~L~~N~l~~--~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (732)
..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|...|..
T Consensus 345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~--------------------------- 397 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW--------------------------- 397 (520)
T ss_dssp CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC---------------------------
T ss_pred ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc---------------------------
Confidence 555555555555555554 344556666666666666666665455433221
Q ss_pred eEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcc
Q 004747 543 ISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTG 621 (732)
Q Consensus 543 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~ 621 (732)
++.|+.|++++|++++.+|..+. ++|++|++++|+++ .+|. ++.+++|++|+|++|++++
T Consensus 398 ----------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 398 ----------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp ----------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred ----------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc
Confidence 56677788888888777776654 68888999999888 6666 7788999999999999984
Q ss_pred cCCcC-CCCCCCCCEEEcccCcceeeCC
Q 004747 622 QIPGN-ISSLQELTLLNLSYNSFSGFVP 648 (732)
Q Consensus 622 ~ip~~-l~~l~~L~~L~ls~N~l~g~ip 648 (732)
+|.. +..+++|++|++++|++++..+
T Consensus 459 -l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 459 -VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -cCHHHhccCCcccEEECcCCCCcccCC
Confidence 5554 8889999999999999987654
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-47 Score=430.95 Aligned_cols=449 Identities=18% Similarity=0.199 Sum_probs=305.1
Q ss_pred CEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEee
Q 004747 109 EFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188 (732)
Q Consensus 109 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls 188 (732)
++||+++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n------------------------ 55 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN------------------------ 55 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS------------------------
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCC------------------------
Confidence 45677777766 3555444 66777777777766665566666666666666555
Q ss_pred CcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCcccc-ccch
Q 004747 189 FNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG-GIPT 267 (732)
Q Consensus 189 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~ 267 (732)
.+++..|..|.++++|++|++++|+++..... .+++|++|++++|.+++ .+|.
T Consensus 56 --~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~------------------------~l~~L~~L~L~~N~l~~~~~p~ 109 (520)
T 2z7x_B 56 --RIQYLDISVFKFNQELEYLDLSHNKLVKISCH------------------------PTVNLKHLDLSFNAFDALPICK 109 (520)
T ss_dssp --CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC------------------------CCCCCSEEECCSSCCSSCCCCG
T ss_pred --ccCCcChHHhhcccCCCEEecCCCceeecCcc------------------------ccCCccEEeccCCccccccchh
Confidence 44444455555555555555555554421111 23334444444444433 2344
Q ss_pred hhhccCCCCEEEeccCCCCCcCccccccCcCC--cEEEccCCCC--CCCCchhhhhcCCCCCccEEeCCCCcccCCCcc-
Q 004747 268 CIASLQALTHLNLSHNHLNYEISPRLVFFEKL--LLLDLSFNDL--SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL- 342 (732)
Q Consensus 268 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~Ls~n~l--~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~- 342 (732)
.++++++|++|++++|.+++ ..+..+++| +.|++++|.+ .+..|..+..+.. ....+++++|.+.+.++.
T Consensus 110 ~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~--~~l~l~l~~n~~~~~~~~~ 184 (520)
T 2z7x_B 110 EFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT--ESLHIVFPTNKEFHFILDV 184 (520)
T ss_dssp GGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE--EEEEEECCSSSCCCCCCCC
T ss_pred hhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccccc--ceEEEEeccCcchhhhhhh
Confidence 44444455555555444443 223334444 5555555555 4444544444332 233456666666654443
Q ss_pred cccCCCCCCEEeccCcc-------CCCccccccCCCCCCCEEEccCCcCccccCcccc---CCcCcceeecccccccccC
Q 004747 343 KITELKSLQALFLSNNL-------LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV---GCFQLLALIVNNNNLSGEI 412 (732)
Q Consensus 343 ~l~~l~~L~~L~Ls~n~-------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~---~~~~L~~L~l~~n~l~~~~ 412 (732)
.+..+++|+.|++++|. +.+.+| .+..+++|+.|++++|.+++..+..+. ..++|+.|++++|.+.|.+
T Consensus 185 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 263 (520)
T 2z7x_B 185 SVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263 (520)
T ss_dssp CCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC
T ss_pred hhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcc
Confidence 45567777777777776 555555 577778888888888777654332221 2357888888888888888
Q ss_pred cccc-----cCCCCCcEEEcccCceeeecc-ccCCCC---CCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccc
Q 004747 413 QPEL-----DALDSLKILDISNNQISGEIP-LTLAGL---KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN 483 (732)
Q Consensus 413 ~~~~-----~~l~~L~~L~L~~n~l~~~~p-~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 483 (732)
|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|++++.
T Consensus 264 p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~ 339 (520)
T 2z7x_B 264 DFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDT 339 (520)
T ss_dssp CCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTT
T ss_pred ccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChh
Confidence 8777 8899999999999998 455 334333 67999999999987542 126789999999999999998
Q ss_pred cchhhhcCCCCCEEEccCCcCcc--cCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhccc
Q 004747 484 LPNWLFSFQAIQMMDFSTNKFMG--FIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFS 561 (732)
Q Consensus 484 ~p~~~~~~~~L~~L~ls~N~l~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 561 (732)
+|..+..+++|++|++++|++++ .+|.. ...+++
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~--------------------------------------------~~~l~~ 375 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEM--------------------------------------------TTQMKS 375 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHH--------------------------------------------HTTCTT
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHH--------------------------------------------HhhCCC
Confidence 99999999999999999999975 22222 123788
Q ss_pred ceEEEccCCcccccCCcc-cccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcc
Q 004747 562 AVGMDLSDNLLHGTIPKG-LFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLS 639 (732)
Q Consensus 562 L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 639 (732)
|++||+++|++++.+|.. +..+++|++|++++|++++.+|. +. ++|++|||++|+++ .+|..+..+++|++|+++
T Consensus 376 L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA 452 (520)
T ss_dssp CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECC
Confidence 999999999999768875 77899999999999999988876 44 79999999999999 888888899999999999
Q ss_pred cCcceeeCCCC--CCCCCcCc-cccCCCCCCC
Q 004747 640 YNSFSGFVPWK--QGYQKFPG-AFAGNPNLCL 668 (732)
Q Consensus 640 ~N~l~g~ip~~--~~~~~~~~-~~~gn~~lcg 668 (732)
+|++++ +|.. ..+..+.. .+.|||..|.
T Consensus 453 ~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 453 SNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 999995 5653 22333444 7889998774
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.5e-47 Score=430.12 Aligned_cols=469 Identities=20% Similarity=0.190 Sum_probs=346.7
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (732)
Q Consensus 81 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (732)
..+++.|++++|.+++..+..+.++++|++|++++|++++..|..|+++++|++|++++|.+++..|..|+++++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 35899999999999988888999999999999999999988889999999999999999999988888899999999999
Q ss_pred CCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccC-cccCCCCCCCEEEeecccCCCccccccc---cccEEECCCCc
Q 004747 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP-ESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SLLVLNLGSNR 236 (732)
Q Consensus 161 Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~---~L~~L~L~~n~ 236 (732)
+++|+......|..++++ ++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..+..+. +|++|++++|.
T Consensus 105 Ls~n~l~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCCcccccchhhhhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999954333567788888 899999999999555555 6899999999999999999998877654 49999999999
Q ss_pred CccccCchhhcccccCeeeCCCCcccccc--ch-hhhccCCCCEEEeccCCCCCcCc----cccccCcCCcEEEccCCCC
Q 004747 237 FSGTLPCFAASAMSLTVLKLDNNSVVGGI--PT-CIASLQALTHLNLSHNHLNYEIS----PRLVFFEKLLLLDLSFNDL 309 (732)
Q Consensus 237 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~-~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l 309 (732)
+.......+..+++|++|++++|.+++.. |. ....+++|++|++++|.+++..+ ..+..+++|+.+++++|.+
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 86443334467899999999999998742 21 23457899999999999876544 3456788999999999987
Q ss_pred CCCCch---hhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCcc
Q 004747 310 SGPLPS---KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386 (732)
Q Consensus 310 ~~~~p~---~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 386 (732)
.+.... .........+++.|++.++.+.... .+. .++..+...++|+.|++++|.+.
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~-----------------~l~~~~~~~~~L~~L~l~~n~l~- 323 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY--LFY-----------------DLSTVYSLLEKVKRITVENSKVF- 323 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG--GSC-----------------CCCHHHHHSTTCCEEEEESSCCC-
T ss_pred cccccccccchhhhhhhcccccccccccccchhh--hcc-----------------cchhhhhhcccceEEEeccCccc-
Confidence 753110 0111122234555555555443110 000 01111122344555555555554
Q ss_pred ccCccc-cCCcCcceeecccccccccCcc---cccCCCCCcEEEcccCceeeecc--ccCCCCCCCCEEEccCCcccccc
Q 004747 387 SIPLNI-VGCFQLLALIVNNNNLSGEIQP---ELDALDSLKILDISNNQISGEIP--LTLAGLKSLEIVDFSSNNLSGSL 460 (732)
Q Consensus 387 ~~p~~~-~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~ 460 (732)
.+|..+ ..+++|+.|++++|.+.+.++. .++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 402 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PM 402 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CC
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cC
Confidence 344443 2455555555555555554432 25566777777777777764432 34667777888888888777 46
Q ss_pred hhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCcee
Q 004747 461 NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMV 540 (732)
Q Consensus 461 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (732)
|..+..+++|++|++++|+++ .+|..+ .++|++|++++|++++.++
T Consensus 403 p~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~~------------------------------- 448 (549)
T 2z81_A 403 PDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFSL------------------------------- 448 (549)
T ss_dssp CSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCCC-------------------------------
T ss_pred ChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhcc-------------------------------
Confidence 666777778888888888776 334332 2578889999888875321
Q ss_pred EEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcC
Q 004747 541 IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSL 619 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l 619 (732)
.++.|++|||++|+++ .+|. ...+++|++|+|++|++++.+|. +..+++|+.|++++|.+
T Consensus 449 -----------------~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 449 -----------------FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp -----------------CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred -----------------cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 1677889999999998 7886 56789999999999999988887 88999999999999999
Q ss_pred cccCC
Q 004747 620 TGQIP 624 (732)
Q Consensus 620 ~~~ip 624 (732)
++..|
T Consensus 510 ~~~~~ 514 (549)
T 2z81_A 510 DCSCP 514 (549)
T ss_dssp CCCHH
T ss_pred cCCCc
Confidence 87765
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.8e-45 Score=423.69 Aligned_cols=510 Identities=22% Similarity=0.191 Sum_probs=351.2
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCC
Q 004747 83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK 162 (732)
Q Consensus 83 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 162 (732)
.+++|||++|.+++..+.+|.++++|++|+|++|++++..+.+|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 56667777776665555566667777777777776665556666667777777777776666555666667777777777
Q ss_pred CCCCCCCcCCchhhhcccCCcEEEeeCccccc-ccCcccCCCCCCCEEEeecccCCCcccccccc-------ccEEECCC
Q 004747 163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS-------LLVLNLGS 234 (732)
Q Consensus 163 ~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-------L~~L~L~~ 234 (732)
+| .+.+..+..++++ ++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+.. ...++++.
T Consensus 133 ~N-~l~~l~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 133 ET-NLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TS-CCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CC-cCCCCChhhhhcC-cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 66 4444444556666 667777777766654 34556666667777777777666655554322 33566666
Q ss_pred CcCccccCchhhcccccCeeeCCCCccccc-cchhhhccCCCCEEEeccCCC------CCcCccccccCcCCcEEEccCC
Q 004747 235 NRFSGTLPCFAASAMSLTVLKLDNNSVVGG-IPTCIASLQALTHLNLSHNHL------NYEISPRLVFFEKLLLLDLSFN 307 (732)
Q Consensus 235 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l------~~~~~~~l~~l~~L~~L~Ls~n 307 (732)
|.++...+..+ ....++.+++.+|..... .+..+..+..++...+..+.. .......+.....+...++..+
T Consensus 211 n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 211 NPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp CCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred CcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 66654433333 233455566666544322 233445555555555433221 2222233444555555555544
Q ss_pred CCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccc
Q 004747 308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGS 387 (732)
Q Consensus 308 ~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 387 (732)
.................+++.+++.++.+.... .+.....++.|++.+|.+.+..+ ..+..|+.++++.|.....
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB
T ss_pred hhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC
Confidence 333221111111122236788888888776332 35566789999999998875433 3467788889988887643
Q ss_pred cCccccCCcCcceeecccccccc--cCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccch-hhh
Q 004747 388 IPLNIVGCFQLLALIVNNNNLSG--EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAI 464 (732)
Q Consensus 388 ~p~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~ 464 (732)
.....+++|+.+++++|.+.. ..+..+..+.+|+.+++..|.... .+..+..+++|+.++++.|......+ ..+
T Consensus 365 --~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 365 --FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp --CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred --cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccc
Confidence 334578899999999998754 345566778899999999998874 45567889999999999888775543 456
Q ss_pred hcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeE
Q 004747 465 TKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRIS 544 (732)
Q Consensus 465 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (732)
..+.+++.++++.|.+.+..+..+..+++++.|++++|++.+.+++..|..
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~----------------------------- 492 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----------------------------- 492 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-----------------------------
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh-----------------------------
Confidence 788999999999999998888889999999999999998654433332222
Q ss_pred EEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccC
Q 004747 545 VTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQI 623 (732)
Q Consensus 545 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~i 623 (732)
+++|++|||++|++++.+|..+.++++|++|+|++|+|++.+|. +..+++|++|||++|+|++.+
T Consensus 493 --------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 558 (635)
T 4g8a_A 493 --------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558 (635)
T ss_dssp --------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCC
T ss_pred --------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCC
Confidence 77899999999999988899999999999999999999988777 888999999999999999999
Q ss_pred CcCCCCC-CCCCEEEcccCcceee
Q 004747 624 PGNISSL-QELTLLNLSYNSFSGF 646 (732)
Q Consensus 624 p~~l~~l-~~L~~L~ls~N~l~g~ 646 (732)
|+.+..+ ++|++|++++|++.+-
T Consensus 559 ~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 559 KQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp SSCTTCCCTTCCEEECTTCCBCCS
T ss_pred HHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999888 6899999999999753
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-46 Score=435.44 Aligned_cols=414 Identities=17% Similarity=0.187 Sum_probs=312.8
Q ss_pred CCcEEEeeCcccccccCcccCCCCCCCEEEe-ecccCCCccccc------------------------------------
Q 004747 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDL-EKNNLTGNVHDF------------------------------------ 223 (732)
Q Consensus 181 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~~~~------------------------------------ 223 (732)
.++.|+|++|.+.|.+|+.++++++|++|+| ++|.++|..+..
T Consensus 324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 5667777777777777777777777777777 666554431110
Q ss_pred ------------------cccccEEECC--CCcCccccCchhhcccccCeeeCCCCcccc-----------------ccc
Q 004747 224 ------------------YQSLLVLNLG--SNRFSGTLPCFAASAMSLTVLKLDNNSVVG-----------------GIP 266 (732)
Q Consensus 224 ------------------~~~L~~L~L~--~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-----------------~~~ 266 (732)
...++.+.+. .|.+++ +|..++++++|++|+|++|.+++ .+|
T Consensus 404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 0113333333 377777 78888888888888888888887 377
Q ss_pred hhhh--ccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCC-CCC-CCchhhhhcC----CCCCccEEeCCCCcccC
Q 004747 267 TCIA--SLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFND-LSG-PLPSKIAQTT----EKAGLVLLDLSHNRFSG 338 (732)
Q Consensus 267 ~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~p~~~~~l~----~~~~L~~L~Ls~n~l~~ 338 (732)
..++ ++++|++|++++|.+.+.+|..+.++++|+.|++++|+ ++| .+|..+..+. ..++|+.|++++|.++
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence 7766 88888888888888888888888888888888888887 887 7787766543 4457888888888888
Q ss_pred CCcc--cccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcC-cceeecccccccccCccc
Q 004747 339 EIPL--KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ-LLALIVNNNNLSGEIQPE 415 (732)
Q Consensus 339 ~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~-L~~L~l~~n~l~~~~~~~ 415 (732)
.+|. .+..+++|+.|++++|.++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+. .+|..
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 7887 7888888888888888888 777 7888888888888888888 78888888888 888888888888 66666
Q ss_pred ccCCCC--CcEEEcccCceeeeccccC---C--CCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhh
Q 004747 416 LDALDS--LKILDISNNQISGEIPLTL---A--GLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL 488 (732)
Q Consensus 416 ~~~l~~--L~~L~L~~n~l~~~~p~~~---~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 488 (732)
+..++. |+.|++++|++.+.+|... . .+++|+.|++++|.++...+..+..+++|+.|+|++|++. .+|..+
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 666544 8888888888887655322 2 3457888888888888444444457888888888888888 666554
Q ss_pred hcC--------CCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcc
Q 004747 489 FSF--------QAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLF 560 (732)
Q Consensus 489 ~~~--------~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 560 (732)
... ++|+.|++++|+++ .+|..++. ..++
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~------------------------------------------~~l~ 753 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA------------------------------------------TTLP 753 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST------------------------------------------TTCT
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhh------------------------------------------ccCC
Confidence 432 27888888888887 56654420 0267
Q ss_pred cceEEEccCCcccccCCcccccccCCceeeccc------ccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCC
Q 004747 561 SAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSF------NFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQEL 633 (732)
Q Consensus 561 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~------N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L 633 (732)
+|+.|+|++|++++ +|..++++++|+.|+|++ |++.+.+|. +.++++|+.|+|++|++ +.+|..+. ++|
T Consensus 754 ~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L 829 (876)
T 4ecn_A 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQL 829 (876)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSS
T ss_pred CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCC
Confidence 78888888888886 788888888888888866 778888887 88888888888888888 68887765 588
Q ss_pred CEEEcccCcceeeCC
Q 004747 634 TLLNLSYNSFSGFVP 648 (732)
Q Consensus 634 ~~L~ls~N~l~g~ip 648 (732)
+.||+++|++...-+
T Consensus 830 ~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 830 YILDIADNPNISIDV 844 (876)
T ss_dssp CEEECCSCTTCEEEC
T ss_pred CEEECCCCCCCccCh
Confidence 888888888876544
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-44 Score=409.98 Aligned_cols=455 Identities=20% Similarity=0.205 Sum_probs=315.6
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCC
Q 004747 85 VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164 (732)
Q Consensus 85 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 164 (732)
+.++++++++++ +|..+. ++|++|++++|.+++..+..|.++++|++|+|++|++++..|.+|.++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 778999999985 676664 89999999999999888889999999999999999999998999999999999999999
Q ss_pred CCCCCcCCchhhhcccCCcEEEeeCccccc-ccCcccCCCCCCCEEEeecccCCCccccccccc--cEEECCCCcC--cc
Q 004747 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL--LVLNLGSNRF--SG 239 (732)
Q Consensus 165 ~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L--~~L~L~~n~l--~~ 239 (732)
+ ++ .+|.. .+ ++|++|++++|.+++ .+|..++++++|++|++++|.+++.....+.+| ++|++++|.+ ++
T Consensus 111 ~-l~-~lp~~--~l-~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 111 R-LQ-NISCC--PM-ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp C-CC-EECSC--CC-TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCS
T ss_pred c-CC-ccCcc--cc-ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccc
Confidence 5 44 56665 56 899999999999987 456889999999999999999886544444444 6666666666 55
Q ss_pred ccCchhhccc--ccCeeeCCCCccccccch-hhhccCCCCEEEeccCCCC----CcCccccccCcCCcEEEccCCCCCCC
Q 004747 240 TLPCFAASAM--SLTVLKLDNNSVVGGIPT-CIASLQALTHLNLSHNHLN----YEISPRLVFFEKLLLLDLSFNDLSGP 312 (732)
Q Consensus 240 ~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~ 312 (732)
..|..+..+. .+ .+++++|.+.+.++. .+..+++|+.+++++|... ......+..++
T Consensus 186 ~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~--------------- 249 (562)
T 3a79_B 186 GETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP--------------- 249 (562)
T ss_dssp SSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS---------------
T ss_pred cCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC---------------
Confidence 5555544432 12 334455554443332 2233444555555444310 00111233333
Q ss_pred CchhhhhcCCCCCccEEeCCCCcccCC----CcccccCCCCCCEEeccCccCCCcccccc-----CCCCCCCEEEccCCc
Q 004747 313 LPSKIAQTTEKAGLVLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIGEIPARI-----GNLTYLQVIDLSHNM 383 (732)
Q Consensus 313 ~p~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~ 383 (732)
.|+.++++++.+.+. ++..+ ..++|++|++++|.++|.+|..+ .+++.|+.++++.+.
T Consensus 250 ------------~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~ 316 (562)
T 3a79_B 250 ------------TLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316 (562)
T ss_dssp ------------SCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred ------------cceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence 444455444444321 11111 22467777777777776666665 555666666666665
Q ss_pred CccccCcc-ccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchh
Q 004747 384 LSGSIPLN-IVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND 462 (732)
Q Consensus 384 l~~~~p~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 462 (732)
+ .+|.. +.. +....+|+.|++++|.+.... ....+++|++|++++|++++.+|.
T Consensus 317 ~--~~p~~~~~~---------------------~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~ 371 (562)
T 3a79_B 317 F--LFSKEALYS---------------------VFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQ 371 (562)
T ss_dssp C--SSCHHHHHH---------------------HHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT
T ss_pred e--ecChhhhhh---------------------hhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhh
Confidence 5 33321 110 011135666666666654221 124667777777777777776677
Q ss_pred hhhcCCCCCEEEcccCCCcc--ccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCcee
Q 004747 463 AITKWTNLKYFSIARNKLSG--NLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMV 540 (732)
Q Consensus 463 ~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (732)
++..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|...|..
T Consensus 372 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~------------------------- 426 (562)
T 3a79_B 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW------------------------- 426 (562)
T ss_dssp TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC-------------------------
T ss_pred hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC-------------------------
Confidence 77777777777777777775 335567777888888888888876666554332
Q ss_pred EEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcC
Q 004747 541 IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSL 619 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l 619 (732)
+++|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|. ++.+++|++|||++|++
T Consensus 427 ------------------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 427 ------------------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp ------------------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCC
T ss_pred ------------------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCC
Confidence 67788899999999887777664 78999999999998 5665 77999999999999999
Q ss_pred cccCCcC-CCCCCCCCEEEcccCcceeeCC
Q 004747 620 TGQIPGN-ISSLQELTLLNLSYNSFSGFVP 648 (732)
Q Consensus 620 ~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip 648 (732)
++ +|.. +..+++|++|++++|++.+..|
T Consensus 486 ~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 486 KS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 94 5554 8999999999999999998765
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.8e-44 Score=404.97 Aligned_cols=450 Identities=21% Similarity=0.162 Sum_probs=298.4
Q ss_pred CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747 107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186 (732)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~ 186 (732)
..+++++++|++++ +|..+. ++|++|++++|.+++..|.+|.++++|++|+|++| .+++..|..+..+ ++|++|+
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~L~~L~ 106 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFN-QDLEYLD 106 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTC-TTCCEEE
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCC-CCCCEEE
Confidence 34888888888885 665554 78888888888888777778888888888887777 4555555555555 5666666
Q ss_pred eeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccc
Q 004747 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP 266 (732)
Q Consensus 187 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 266 (732)
+++|.++ .+|.. .+++|++|++++|.+++. .+|..++++++|++|++++|.+.+.
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l--------------------~~p~~~~~l~~L~~L~L~~n~l~~~-- 161 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVL--------------------PVCKEFGNLTKLTFLGLSAAKFRQL-- 161 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBC--------------------CCCGGGGGCTTCCEEEEECSBCCTT--
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCcccc--------------------CchHhhcccCcccEEecCCCccccC--
Confidence 6666665 34443 455555555555544321 2345666667777777777766542
Q ss_pred hhhhccCCC--CEEEeccCCC--CCcCccccccCc--CCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCC
Q 004747 267 TCIASLQAL--THLNLSHNHL--NYEISPRLVFFE--KLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI 340 (732)
Q Consensus 267 ~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~ 340 (732)
.+..+++| ++|++++|.+ ++..|..+..+. .+ .+++++|.+.+.++..
T Consensus 162 -~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~------------------------ 215 (562)
T 3a79_B 162 -DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNM------------------------ 215 (562)
T ss_dssp -TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEE------------------------
T ss_pred -chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhh------------------------
Confidence 24444444 7777777766 555555555433 22 3345555544433321
Q ss_pred cccccCCCCCCEEeccCcc-----CCCccccccCCCCCCCEEEccCCcCcccc----CccccCCcCcceeeccccccccc
Q 004747 341 PLKITELKSLQALFLSNNL-----LIGEIPARIGNLTYLQVIDLSHNMLSGSI----PLNIVGCFQLLALIVNNNNLSGE 411 (732)
Q Consensus 341 p~~l~~l~~L~~L~Ls~n~-----l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~----p~~~~~~~~L~~L~l~~n~l~~~ 411 (732)
.+..+++|+.+++++|. +.+ ....+..+++|+.++++++.+.+.. +.. ....+|++|++++|.+.|.
T Consensus 216 --~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ 291 (562)
T 3a79_B 216 --SVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITER 291 (562)
T ss_dssp --EESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSC
T ss_pred --cccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeecc
Confidence 22333444444444442 111 1123444555555555554443211 111 1223666666666666666
Q ss_pred Ccccc-----cCCCCCcEEEcccCceeeecc-ccCC---CCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCcc
Q 004747 412 IQPEL-----DALDSLKILDISNNQISGEIP-LTLA---GLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482 (732)
Q Consensus 412 ~~~~~-----~~l~~L~~L~L~~n~l~~~~p-~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 482 (732)
+|..+ ..++.|+.++++.+.+ .+| ..+. ...+|++|++++|.+.... ....+++|++|++++|.+++
T Consensus 292 ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~ 367 (562)
T 3a79_B 292 IDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTD 367 (562)
T ss_dssp CCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT
T ss_pred ccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCcccc
Confidence 66555 5666666677776666 334 2221 1267999999999987432 12678999999999999999
Q ss_pred ccchhhhcCCCCCEEEccCCcCcccC--CcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcc
Q 004747 483 NLPNWLFSFQAIQMMDFSTNKFMGFI--PDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLF 560 (732)
Q Consensus 483 ~~p~~~~~~~~L~~L~ls~N~l~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 560 (732)
.+|..+..+++|++|++++|++++.. |.. ...++
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------------------------------------------~~~l~ 403 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALM--------------------------------------------TKNMS 403 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTTHHHHT--------------------------------------------TTTCT
T ss_pred chhhhhcccCCCCEEECCCCCcCCcccchhh--------------------------------------------hcCCC
Confidence 89999999999999999999997521 111 12378
Q ss_pred cceEEEccCCcccccCCcc-cccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEc
Q 004747 561 SAVGMDLSDNLLHGTIPKG-LFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNL 638 (732)
Q Consensus 561 ~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 638 (732)
+|+.||+++|++++.+|.. +..+++|++|++++|++++.+|. +. ++|++|||++|+++ .+|..+..+++|++|++
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEEC
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEEC
Confidence 8999999999999867765 77899999999999999987776 43 79999999999999 78877779999999999
Q ss_pred ccCcceeeCCCC--CCCCCcCc-cccCCCCCCC
Q 004747 639 SYNSFSGFVPWK--QGYQKFPG-AFAGNPNLCL 668 (732)
Q Consensus 639 s~N~l~g~ip~~--~~~~~~~~-~~~gn~~lcg 668 (732)
++|++++ +|.. ..+..+.. .+.|||..|.
T Consensus 481 ~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 481 ASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCC
Confidence 9999995 5543 23334444 7899998874
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-42 Score=396.41 Aligned_cols=547 Identities=19% Similarity=0.159 Sum_probs=400.0
Q ss_pred CCCCCCCCCCCCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEEC
Q 004747 58 TQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDL 137 (732)
Q Consensus 58 ~~~l~~w~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 137 (732)
...+++|...-+..|..-.|..... ..+-++.+++ .+|..+. +++++|||++|+|++..+.+|.++++|++|||
T Consensus 10 ~~~~~~~~~~~p~~~~~c~~~~~~~---~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~L 83 (635)
T 4g8a_A 10 DDKLAAANSSIPESWEPCVEVVPNI---TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 83 (635)
T ss_dssp ---------------CCSEEEETTT---EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cchhhcccCCCCCCCCCccccCCCC---EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEEC
Confidence 3445566443334454333321111 1233344454 4565553 47999999999999888889999999999999
Q ss_pred CCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCC
Q 004747 138 SYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT 217 (732)
Q Consensus 138 s~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 217 (732)
++|+|+++.|.+|.++++|++|+|++| .+++..+..+.++ ++|++|++++|.+++..+..|+++++|++|++++|.++
T Consensus 84 s~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 84 SRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTC-TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred CCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCC-CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence 999999888899999999999999999 5666667778888 89999999999999877778999999999999999998
Q ss_pred Cc-cccc---cccccEEECCCCcCccccCchhhcccccC----eeeCCCCccccccchhhhccCCCCEEEeccCCCCCc-
Q 004747 218 GN-VHDF---YQSLLVLNLGSNRFSGTLPCFAASAMSLT----VLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYE- 288 (732)
Q Consensus 218 ~~-~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~- 288 (732)
+. .+.. +..|++|++++|++++..+..+..+.+++ .++++.|.+....+..+ ....++.+++.+|.....
T Consensus 162 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~ 240 (635)
T 4g8a_A 162 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNV 240 (635)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHH
T ss_pred cCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccc
Confidence 64 3443 45699999999999988888877766554 57788888876555443 344567888888765533
Q ss_pred CccccccCcCCcEEEccCCCC------CCCCchhhhhcCCCCCccEEeCCCCccc---CCCcccccCCCCCCEEeccCcc
Q 004747 289 ISPRLVFFEKLLLLDLSFNDL------SGPLPSKIAQTTEKAGLVLLDLSHNRFS---GEIPLKITELKSLQALFLSNNL 359 (732)
Q Consensus 289 ~~~~l~~l~~L~~L~Ls~n~l------~~~~p~~~~~l~~~~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~ 359 (732)
.+..+..+..++...+..+.. .......+.... .+...++..+... ...+..+....+++.+++.++.
T Consensus 241 ~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~---~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 317 (635)
T 4g8a_A 241 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC---NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT 317 (635)
T ss_dssp HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG---GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE
T ss_pred cchhhcCCccccccccccccccccccccccccccccccc---chhhhhhhhhhhcccccchhhhhhhhcccccccccccc
Confidence 234456677777666543322 212222222222 3444444433222 1233445667788899988888
Q ss_pred CCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceee--ecc
Q 004747 360 LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG--EIP 437 (732)
Q Consensus 360 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p 437 (732)
+.+.. .+.....++.|++.+|.+.+..+ ..+..|+.+.+..|...... ....+++|+.|++++|.+.. ..+
T Consensus 318 ~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~ 390 (635)
T 4g8a_A 318 IERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCS 390 (635)
T ss_dssp EEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECC
T ss_pred ccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccc
Confidence 76432 35667789999999998875443 24567888888888776543 34578899999999998753 345
Q ss_pred ccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccc-hhhhcCCCCCEEEccCCcCcccCCcccccCc
Q 004747 438 LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP-NWLFSFQAIQMMDFSTNKFMGFIPDGNFNFS 516 (732)
Q Consensus 438 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~ 516 (732)
..+..+.+|+++++..|.+.. .+..+..+++|+.+++.+|+.....+ ..+..+++++.+++++|.+.+..|... .
T Consensus 391 ~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~-~-- 466 (635)
T 4g8a_A 391 QSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-N-- 466 (635)
T ss_dssp HHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT-T--
T ss_pred cchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc-c--
Confidence 556678889999999988874 44567788999999999888775554 457788999999999999876555432 1
Q ss_pred cccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCccc-ccCCcccccccCCceeeccccc
Q 004747 517 LNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLH-GTIPKGLFQLQGLEYLNLSFNF 595 (732)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~ 595 (732)
.++.++.|++++|++. +.+|..+..+++|++|||++|+
T Consensus 467 -----------------------------------------~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~ 505 (635)
T 4g8a_A 467 -----------------------------------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 505 (635)
T ss_dssp -----------------------------------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred -----------------------------------------cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc
Confidence 2678899999999854 4578889999999999999999
Q ss_pred ceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCCCC-C-CCcCc-cccCCCCCCC
Q 004747 596 LDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQG-Y-QKFPG-AFAGNPNLCL 668 (732)
Q Consensus 596 l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~-~-~~~~~-~~~gn~~lcg 668 (732)
+++.+|. +.++++|++|+|++|+|++..|..|..+++|++||+++|+|++.+|...+ + .++.. .+.|||.-|.
T Consensus 506 L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999888 89999999999999999999999999999999999999999999887543 2 23444 7899999984
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.3e-43 Score=382.78 Aligned_cols=283 Identities=22% Similarity=0.271 Sum_probs=143.6
Q ss_pred cCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCC
Q 004747 103 CKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNL 182 (732)
Q Consensus 103 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L 182 (732)
.+.++|++|++++|.+ +.+|.+++++++|++|++++|.+.|.+|.+++++++|+++++.+|.. .++
T Consensus 8 ~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-------------~~l 73 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-------------RQA 73 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------HTC
T ss_pred cccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------cCC
Confidence 3457888888888888 68888888888888888888888888888888888776666655511 456
Q ss_pred cEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccc
Q 004747 183 EKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVV 262 (732)
Q Consensus 183 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 262 (732)
++|++++|.+++ +|.. .++|++|++++|.+++ +|..+.+|++|++++|++++ ++.. .++|++|++++|.++
T Consensus 74 ~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 74 HELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp SEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred CEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 777777777764 3331 3567777777777766 44444556666666666654 2211 145666666666665
Q ss_pred cccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcc
Q 004747 263 GGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL 342 (732)
Q Consensus 263 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~ 342 (732)
+ +| .++++++|++|++++|++++ +|..+ ++|++|++++|++++ +| .+..++ +|++|++++|.+++ +|.
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~---~L~~L~l~~N~l~~-l~~ 212 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLP---FLTAIYADNNSLKK-LPD 212 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCT---TCCEEECCSSCCSS-CCC
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCC---CCCEEECCCCcCCc-CCC
Confidence 4 44 35666666666666666653 33322 355666666665554 33 233333 55666666665553 332
Q ss_pred cccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCC
Q 004747 343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSL 422 (732)
Q Consensus 343 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 422 (732)
.. ++|++|++++|.++ .+|. ++.+++|++|++++|++++ +|.. .++|+.|++++|.+.+ +|.. .++|
T Consensus 213 ~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L 279 (454)
T 1jl5_A 213 LP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSL 279 (454)
T ss_dssp CC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTC
T ss_pred Cc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcC
Confidence 21 35556666666555 4442 5555566666666655553 2221 1344444444444443 1211 2344
Q ss_pred cEEEcccCcee
Q 004747 423 KILDISNNQIS 433 (732)
Q Consensus 423 ~~L~L~~n~l~ 433 (732)
+.|++++|+++
T Consensus 280 ~~L~ls~N~l~ 290 (454)
T 1jl5_A 280 TFLDVSENIFS 290 (454)
T ss_dssp CEEECCSSCCS
T ss_pred CEEECcCCccC
Confidence 55555555444
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.7e-40 Score=360.55 Aligned_cols=367 Identities=20% Similarity=0.159 Sum_probs=260.8
Q ss_pred CCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCC-CccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcE
Q 004747 106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEK 184 (732)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~ 184 (732)
++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ |..|.++++|++|+|++| .+.+..|..++++ ++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGL-ANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTC-TTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCc-ccCCE
Confidence 78999999999998888888999999999999999887554 567888888888888888 4566667777777 78888
Q ss_pred EEeeCcccccccCcc--cCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCch-hhcccccCeeeCCCCcc
Q 004747 185 LDFSFNSFCGEIPES--LYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCF-AASAMSLTVLKLDNNSV 261 (732)
Q Consensus 185 L~Ls~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~Ls~n~l 261 (732)
|++++|.+++..|.. +.++++|++|++++|.+++. .|.. +..+++|++|++++|.+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------------~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI---------------------QPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC---------------------CCCGGGGGCTTCCEEECTTCCB
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCcc---------------------CcccccCCCCcccEEeCCCCcc
Confidence 888888877655444 77777777777777766543 3333 55666677777777777
Q ss_pred ccccchhhhcc--CCCCEEEeccCCCCCcCccc--------cccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeC
Q 004747 262 VGGIPTCIASL--QALTHLNLSHNHLNYEISPR--------LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL 331 (732)
Q Consensus 262 ~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~L 331 (732)
.+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+++..|..+.......+|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 66666666555 56777777777766543332 335678888888888888877777777655558888888
Q ss_pred CCCcccCCCcccccCCCCCCEEeccCccCCCccccccC--CCCCCCEEEccCCcCccccCccccCCcCcceeeccccccc
Q 004747 332 SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG--NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409 (732)
Q Consensus 332 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 409 (732)
++|.+.+.... .+.+.+..+..+. ..++|++|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus 247 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 312 (455)
T 3v47_A 247 SNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312 (455)
T ss_dssp TTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc
Confidence 88876543110 1111111111111 2356666666666666666666666666777777777766
Q ss_pred ccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhh
Q 004747 410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF 489 (732)
Q Consensus 410 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 489 (732)
+..+..+..+++|++|++++|.+++..|..+.++++|++|++++|++++..|.++..+++|++|++++|++++..+..+.
T Consensus 313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 392 (455)
T 3v47_A 313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence 66666677777788888888877777677777778888888888888777777777788888888888888765556667
Q ss_pred cCCCCCEEEccCCcCcccCC
Q 004747 490 SFQAIQMMDFSTNKFMGFIP 509 (732)
Q Consensus 490 ~~~~L~~L~ls~N~l~~~~p 509 (732)
.+++|++|++++|++++.+|
T Consensus 393 ~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 393 RLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCBCCCTT
T ss_pred cCCcccEEEccCCCcccCCC
Confidence 77888888888888877776
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.1e-40 Score=362.43 Aligned_cols=364 Identities=18% Similarity=0.181 Sum_probs=246.6
Q ss_pred cccEEECCCCcCccccCchhhcccccCeeeCCCCcccccc-chhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEc
Q 004747 226 SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGI-PTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDL 304 (732)
Q Consensus 226 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 304 (732)
+|++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 3555555555555555666666777777777777665443 445666777777777777776666666777777777777
Q ss_pred cCCCCCCCCchh--hhhcCCCCCccEEeCCCCcccCCCccc-ccCCCCCCEEeccCccCCCccccccCCC--CCCCEEEc
Q 004747 305 SFNDLSGPLPSK--IAQTTEKAGLVLLDLSHNRFSGEIPLK-ITELKSLQALFLSNNLLIGEIPARIGNL--TYLQVIDL 379 (732)
Q Consensus 305 s~n~l~~~~p~~--~~~l~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~L 379 (732)
++|.+++..+.. +..+. +|++|++++|.+++..|.. +..+++|++|++++|.+++..+..+..+ .+|+.+++
T Consensus 111 ~~n~l~~~~~~~~~~~~l~---~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLT---SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCT---TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred CCCCCCccccCcccccCcc---cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 777766543332 33333 6777777777776555554 5666777777777777766666655544 56666777
Q ss_pred cCCcCccccCccc--------cCCcCcceeecccccccccCcccccCC---CCCcEEEcccCceeeeccccCCCCCCCCE
Q 004747 380 SHNMLSGSIPLNI--------VGCFQLLALIVNNNNLSGEIQPELDAL---DSLKILDISNNQISGEIPLTLAGLKSLEI 448 (732)
Q Consensus 380 s~n~l~~~~p~~~--------~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 448 (732)
++|.+.+..+..+ ..+++|+.|++++|.+.+..+..+... ++|+.|++++|...+...
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----------- 256 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF----------- 256 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-----------
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc-----------
Confidence 7766664333221 123344444444444444444333222 445555555544332110
Q ss_pred EEccCCcccccchhhhhc--CCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCC
Q 004747 449 VDFSSNNLSGSLNDAITK--WTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGR 526 (732)
Q Consensus 449 L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~ 526 (732)
..+.+.+..+..+.. .++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+ .
T Consensus 257 ---~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~------------ 320 (455)
T 3v47_A 257 ---GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF-W------------ 320 (455)
T ss_dssp ---TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-T------------
T ss_pred ---chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh-c------------
Confidence 011111111222222 3689999999999988888888999999999999999886555432 1
Q ss_pred CCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccC
Q 004747 527 SMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYR 605 (732)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~ 605 (732)
.+++|++|++++|++++..|..+.++++|++|+|++|++++.+|. +..
T Consensus 321 -------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 321 -------------------------------GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp -------------------------------TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred -------------------------------CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 267889999999999988888899999999999999999988887 899
Q ss_pred ccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCC
Q 004747 606 LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWK 650 (732)
Q Consensus 606 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 650 (732)
+++|++|+|++|++++..+..+..+++|++|++++|++++.+|..
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 999999999999999887788899999999999999999999854
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.2e-40 Score=347.54 Aligned_cols=291 Identities=29% Similarity=0.475 Sum_probs=213.0
Q ss_pred CCHHhHHHHHHHHhcCCCCCCCCCCC-CCCCCCC--ccceeecCCC--CcEEEEEcCCCCCcc--cccccccCCCCCCEE
Q 004747 39 LNLEDKASLLLFKSLVQDPTQKLSSW-VGSNCTN--WTGVACNFQT--GHVVSINLTDTSLSG--QVHPRLCKLSFLEFL 111 (732)
Q Consensus 39 ~~~~~~~~l~~~k~~~~~~~~~l~~w-~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~~--~~~~~l~~l~~L~~L 111 (732)
+.++|++||++||+++.+|. .+++| .+.+||. |.||.|+... ++|++|+|+++.+.| .+|..+.++++|++|
T Consensus 3 c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L 81 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred CCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCee
Confidence 44578889999999998876 78999 5678998 9999998554 899999999999998 889999999999999
Q ss_pred ECCC-CCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCc
Q 004747 112 VLSS-NAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN 190 (732)
Q Consensus 112 ~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n 190 (732)
++++ |.+.+.+|..|+++++|++|++++|.+++.+|..|.++++|++|++++| .+.+.+|..+..+ ++|++|++++|
T Consensus 82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l-~~L~~L~L~~N 159 (313)
T 1ogq_A 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSL-PNLVGITFDGN 159 (313)
T ss_dssp EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGC-TTCCEEECCSS
T ss_pred eCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC-ccCCcCChHHhcC-CCCCeEECcCC
Confidence 9995 8898889999999999999999999998888888888888888888888 5566777777777 77777777777
Q ss_pred ccccccCcccCCCC-CCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhh
Q 004747 191 SFCGEIPESLYYLK-SLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI 269 (732)
Q Consensus 191 ~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l 269 (732)
.+++.+|..+..++ +|++|++++|.++ +.+|..+..++ |++|++++|.+++..|..+
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~---------------------~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~ 217 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLT---------------------GKIPPTFANLN-LAFVDLSRNMLEGDASVLF 217 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEE---------------------EECCGGGGGCC-CSEEECCSSEEEECCGGGC
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeee---------------------ccCChHHhCCc-ccEEECcCCcccCcCCHHH
Confidence 77777777777665 6666666655543 34455555554 6666666666666666666
Q ss_pred hccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCC
Q 004747 270 ASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS 349 (732)
Q Consensus 270 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 349 (732)
..+++|++|++++|.+++.++. +..+++|++|++++|.+++.+|..+..++ +|++|++++|+++|.+|.. ..+++
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~Ls~N~l~~~ip~~-~~l~~ 292 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK---FLHSLNVSFNNLCGEIPQG-GNLQR 292 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT---TCCEEECCSSEEEEECCCS-TTGGG
T ss_pred hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc---CCCEEECcCCcccccCCCC-ccccc
Confidence 6666666666666666644443 45555566666666655555555555444 5555555555555555543 44555
Q ss_pred CCEEeccCcc
Q 004747 350 LQALFLSNNL 359 (732)
Q Consensus 350 L~~L~Ls~n~ 359 (732)
|+.+++++|.
T Consensus 293 L~~l~l~~N~ 302 (313)
T 1ogq_A 293 FDVSAYANNK 302 (313)
T ss_dssp SCGGGTCSSS
T ss_pred cChHHhcCCC
Confidence 5555555554
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.6e-40 Score=363.68 Aligned_cols=403 Identities=23% Similarity=0.266 Sum_probs=240.2
Q ss_pred CCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCE
Q 004747 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKH 208 (732)
Q Consensus 129 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 208 (732)
.++|++|++++|.+ +.+|.+|+++++|++|++++| .+.+.+|..++++ .+|+.+++..|.. .++++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l-~~L~~l~l~~c~~-----------~~l~~ 75 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQ-REMAVSRLRDCLD-----------RQAHE 75 (454)
T ss_dssp -------------------------CCHHHHHHHHH-HHHHTSCTTSCCC-HHHHHHHHHHHHH-----------HTCSE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCC-cccccCCcccccc-hhcchhhhhhhhc-----------cCCCE
Confidence 46677777777777 566777777777766666666 3455566666555 5555555554431 35689
Q ss_pred EEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCc
Q 004747 209 LDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYE 288 (732)
Q Consensus 209 L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 288 (732)
|++++|.+++.. ....+|++|++++|.+++ +|.. .++|++|++++|.+++ ++.. .++|++|++++|++++
T Consensus 76 L~l~~~~l~~lp-~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 76 LELNNLGLSSLP-ELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp EECTTSCCSCCC-SCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-
T ss_pred EEecCCccccCC-CCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-
Confidence 999999988743 345679999999998887 5543 3678899999888875 3321 2688888998888886
Q ss_pred CccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCcccccc
Q 004747 289 ISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI 368 (732)
Q Consensus 289 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l 368 (732)
+| .+..+++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~-lp~~~------~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~- 213 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKK-LPDLP------PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL- 213 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSC-CCCCC------TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-
T ss_pred Cc-ccCCCCCCCEEECCCCcCcc-cCCCc------ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-
Confidence 56 58888888888888888885 55432 278888888888885 56 57888888888888888875 4432
Q ss_pred CCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCE
Q 004747 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI 448 (732)
Q Consensus 369 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 448 (732)
.++|++|++++|.++ .+| .+..+++|+.|++++|++++. |. ..++|+.|++++|++++ +|.. +++|++
T Consensus 214 --~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~ 281 (454)
T 1jl5_A 214 --PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTF 281 (454)
T ss_dssp --CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred --cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cCcCCE
Confidence 257888888888887 566 377788888888888887753 32 23678888888888774 4432 367788
Q ss_pred EEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCC
Q 004747 449 VDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSM 528 (732)
Q Consensus 449 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~ 528 (732)
|++++|++++. |. ..++|++|++++|++++ ++. ..++|++|++++|++++ +|..
T Consensus 282 L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~----------------- 335 (454)
T 1jl5_A 282 LDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL----------------- 335 (454)
T ss_dssp EECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC-----------------
T ss_pred EECcCCccCcc-cC---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc-----------------
Confidence 88888877752 21 12577778888877764 221 12467777777777764 3321
Q ss_pred CCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeeccccccee--cCCc-ccC
Q 004747 529 PAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG--QVPG-LYR 605 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~-l~~ 605 (732)
+++|+.|++++|+++ .+|. .+++|++|++++|++++ .+|. +..
T Consensus 336 ------------------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 336 ------------------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp ------------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred ------------------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 345677777777777 5665 36777777777777776 4554 332
Q ss_pred ccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCccee--eCCCC
Q 004747 606 LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG--FVPWK 650 (732)
Q Consensus 606 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g--~ip~~ 650 (732)
++.|.+.|.+|.. +++|++||+++|+++| .+|..
T Consensus 382 --------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 382 --------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp --------EECCC----------------------------------
T ss_pred --------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence 2346666666653 3789999999999998 67743
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.1e-38 Score=345.82 Aligned_cols=322 Identities=20% Similarity=0.192 Sum_probs=189.5
Q ss_pred cccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCch
Q 004747 95 SGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGW 174 (732)
Q Consensus 95 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~ 174 (732)
.+..+..++++++|++|++++|.+++. | .++.+++|++|++++|++++. | ++.+++|++|++++|+ +++. +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~-l~~~-~-- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNK-LTNL-D-- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSC-CSCC-C--
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCC-Ccee-e--
Confidence 334445677788888888888888764 4 578888888888888888864 3 7777788888887773 3332 2
Q ss_pred hhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCee
Q 004747 175 VGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVL 254 (732)
Q Consensus 175 ~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 254 (732)
++.+ ++|++|++++|.+++ +| ++.+++|++|++++|.+++.. ++.+++|++|
T Consensus 102 ~~~l-~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~------------------------l~~l~~L~~L 153 (457)
T 3bz5_A 102 VTPL-TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEID------------------------VSHNTQLTEL 153 (457)
T ss_dssp CTTC-TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCC------------------------CTTCTTCCEE
T ss_pred cCCC-CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceec------------------------cccCCcCCEE
Confidence 5555 677777777777765 33 666666666666666665432 3344555555
Q ss_pred eCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCC
Q 004747 255 KLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHN 334 (732)
Q Consensus 255 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n 334 (732)
++++|...+.+ .++.+++|++|++++|++++ +| +..+++|+.|++++|.+++. .+..+ ++|++|++++|
T Consensus 154 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l---~~L~~L~Ls~N 222 (457)
T 3bz5_A 154 DCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQN---IQLTFLDCSSN 222 (457)
T ss_dssp ECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTC---TTCSEEECCSS
T ss_pred ECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccC---CCCCEEECcCC
Confidence 55555433333 24455566666666666554 22 55555666666666665543 12222 25666666666
Q ss_pred cccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcc
Q 004747 335 RFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP 414 (732)
Q Consensus 335 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~ 414 (732)
++++ +| +..+++|+.|++++|++++.. ++.+++|+.|++++|. |+.+++++|.+.+.+|
T Consensus 223 ~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 223 KLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp CCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE-
T ss_pred cccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc-
Confidence 6664 44 555666666666666666432 3445556666655442 3445555555555544
Q ss_pred cccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCC
Q 004747 415 ELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAI 494 (732)
Q Consensus 415 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L 494 (732)
++.+++|+.|++++|...+.+|. ..++|+.|++++| ++|++|++++|++++. + +..+++|
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L 341 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKL 341 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTC
T ss_pred -ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcC
Confidence 34556666666666665555553 2334444444433 4566666666666542 2 5555566
Q ss_pred CEEEccCCcCc
Q 004747 495 QMMDFSTNKFM 505 (732)
Q Consensus 495 ~~L~ls~N~l~ 505 (732)
+.|++++|+++
T Consensus 342 ~~L~l~~N~l~ 352 (457)
T 3bz5_A 342 KSLSCVNAHIQ 352 (457)
T ss_dssp SEEECCSSCCC
T ss_pred cEEECCCCCCC
Confidence 66666665554
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.1e-38 Score=345.90 Aligned_cols=356 Identities=17% Similarity=0.163 Sum_probs=288.0
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (732)
Q Consensus 81 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (732)
-.+++.|+++++.+++. | .+..+++|++|++++|++++. | ++.+++|++|++++|.+++. | ++++++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 35799999999999875 4 799999999999999999975 4 89999999999999999975 3 88999999999
Q ss_pred CCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcc-ccccccccEEECCCCcCcc
Q 004747 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV-HDFYQSLLVLNLGSNRFSG 239 (732)
Q Consensus 161 Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~L~~L~L~~n~l~~ 239 (732)
+++| .+++ +| ++.+ ++|++|++++|.+++. + ++++++|++|++++|...+.+ ...+.+|++|++++|++++
T Consensus 113 L~~N-~l~~-l~--~~~l-~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTN-KLTK-LD--VSQN-PLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSS-CCSC-CC--CTTC-TTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred CCCC-cCCe-ec--CCCC-CcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence 9999 4544 44 6777 8999999999999974 3 889999999999999554433 3345668899999998886
Q ss_pred ccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhh
Q 004747 240 TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQ 319 (732)
Q Consensus 240 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 319 (732)
+| +..+++|++|++++|.+++. .++.+++|++|++++|++++ +| +..+++|++|++++|++++..+ ..
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~---~~ 252 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV---ST 252 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC---TT
T ss_pred -ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH---HH
Confidence 34 77788888888888888864 37788888888888888886 44 7788888888888888886432 22
Q ss_pred cCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcc
Q 004747 320 TTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL 399 (732)
Q Consensus 320 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 399 (732)
+. +|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. ...+|+
T Consensus 253 l~---~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~ 310 (457)
T 3bz5_A 253 LS---KLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGIT 310 (457)
T ss_dssp CT---TCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCS
T ss_pred CC---CCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcce
Confidence 33 6778877665 45678888888888877 57789999999999988887774 345566
Q ss_pred eeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCC
Q 004747 400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479 (732)
Q Consensus 400 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 479 (732)
.+++++| ++|+.|++++|++++. + +.++++|+.|++++|++++ ++.|..|++++|.
T Consensus 311 ~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~ 366 (457)
T 3bz5_A 311 ELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNN 366 (457)
T ss_dssp CCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTS
T ss_pred Eechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCc
Confidence 6655544 6899999999999974 3 8899999999999999986 3567777899999
Q ss_pred CccccchhhhcCCCCCEEEccCCcCcccCCcccccC
Q 004747 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNF 515 (732)
Q Consensus 480 l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~ 515 (732)
+.|. ..+..++.+++++|+++|.+|..++..
T Consensus 367 l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~ 397 (457)
T 3bz5_A 367 FEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQ 397 (457)
T ss_dssp EEEE-----EEEEECCCBCCBTTBEEEECCTTCBCT
T ss_pred EEec-----ceeeecCccccccCcEEEEcChhHhcc
Confidence 9876 345668889999999999999887543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.9e-36 Score=330.37 Aligned_cols=344 Identities=25% Similarity=0.350 Sum_probs=210.9
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeC
Q 004747 82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161 (732)
Q Consensus 82 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 161 (732)
.+++.|+++++.+.. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ ++++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 357777777777653 33 46677778888888877775543 7777788888888777775544 777777777777
Q ss_pred CCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCcccc
Q 004747 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTL 241 (732)
Q Consensus 162 s~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~ 241 (732)
++|. +.+. +. +..+ ++|++|++++|.+.+ ++ .+.++++|++|+++ |.+. +.
T Consensus 120 ~~n~-l~~~-~~-~~~l-~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~---------------------~~- 170 (466)
T 1o6v_A 120 FNNQ-ITDI-DP-LKNL-TNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVT---------------------DL- 170 (466)
T ss_dssp CSSC-CCCC-GG-GTTC-TTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCC---------------------CC-
T ss_pred CCCC-CCCC-hH-HcCC-CCCCEEECCCCccCC-Ch-hhccCCcccEeecC-Cccc---------------------Cc-
Confidence 7773 3332 22 5555 677777777777664 22 36666677766664 2221 11
Q ss_pred CchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcC
Q 004747 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT 321 (732)
Q Consensus 242 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 321 (732)
..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++. + .+..++
T Consensus 171 -~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~l~~l~ 243 (466)
T 1o6v_A 171 -KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-G-TLASLT 243 (466)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G-GGGGCT
T ss_pred -hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-h-hhhcCC
Confidence 1256667777777777777643 236677777777777777765443 55666777777777766632 1 233333
Q ss_pred CCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCccee
Q 004747 322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLAL 401 (732)
Q Consensus 322 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 401 (732)
+|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+.
T Consensus 244 ---~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-------------- 302 (466)
T 1o6v_A 244 ---NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI-------------- 302 (466)
T ss_dssp ---TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--------------
T ss_pred ---CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc--------------
Confidence 56666666666654333 5555666666666666654332 55555666666665555532
Q ss_pred ecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCc
Q 004747 402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481 (732)
Q Consensus 402 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 481 (732)
.+ +..+++|+.|++++|++++..| +..+++|++|++++|++++. ..+..+++|++|++++|+++
T Consensus 303 ----------~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 303 ----------SP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp ----------GG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ----------hh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence 22 4455566666666666665444 45566666666666666644 34556666666666666666
Q ss_pred cccchhhhcCCCCCEEEccCCcCcc
Q 004747 482 GNLPNWLFSFQAIQMMDFSTNKFMG 506 (732)
Q Consensus 482 ~~~p~~~~~~~~L~~L~ls~N~l~~ 506 (732)
+..| +..+++|+.|++++|++++
T Consensus 367 ~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 367 DLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp BCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ccch--hhcCCCCCEEeccCCcccC
Confidence 5555 5666666666666666654
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.9e-35 Score=323.02 Aligned_cols=323 Identities=27% Similarity=0.362 Sum_probs=224.6
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (732)
Q Consensus 81 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (732)
..+++.|+++++.+++..+ +.++++|++|++++|.+++..+ ++++++|++|++++|.+++..+ +.++++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEE
Confidence 3579999999999986543 9999999999999999997655 9999999999999999997643 89999999999
Q ss_pred CCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccc
Q 004747 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGT 240 (732)
Q Consensus 161 Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~ 240 (732)
+++|+ +.+ ++ .+..+ ++|++|+++ |.+.+.. .+.++++|++|++++|.+++..
T Consensus 141 l~~n~-l~~-~~-~~~~l-~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~-------------------- 193 (466)
T 1o6v_A 141 LSSNT-ISD-IS-ALSGL-TSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDIS-------------------- 193 (466)
T ss_dssp EEEEE-ECC-CG-GGTTC-TTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCCG--------------------
T ss_pred CCCCc-cCC-Ch-hhccC-CcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCCh--------------------
Confidence 99995 333 33 47777 899999997 4555433 3889999999999999876432
Q ss_pred cCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhc
Q 004747 241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQT 320 (732)
Q Consensus 241 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 320 (732)
.+..+++|++|++++|.+.+..| ++.+++|++|++++|.+++. +.+..+++|++|++++|.+++..+ +..+
T Consensus 194 ---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l 264 (466)
T 1o6v_A 194 ---VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 264 (466)
T ss_dssp ---GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred ---hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcC
Confidence 24455566666666666554433 45566666666666666542 345566666666666666664333 3333
Q ss_pred CCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcce
Q 004747 321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLA 400 (732)
Q Consensus 321 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 400 (732)
+ +|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+++..| +..+++|+.
T Consensus 265 ~---~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 265 T---KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp T---TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred C---CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 3 66777777776664332 5666777777777777765433 5667777777777777765444 455566666
Q ss_pred eecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccc
Q 004747 401 LIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458 (732)
Q Consensus 401 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 458 (732)
|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|.+++
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 66666665554 345666677777777777766555 5666677777777776664
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=335.55 Aligned_cols=321 Identities=21% Similarity=0.153 Sum_probs=182.9
Q ss_pred CeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeC
Q 004747 252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL 331 (732)
Q Consensus 252 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~L 331 (732)
+.++.++++++ .+|..+ .+++++|++++|.+++..+..+..+++|++|+|++|.+++..|..+..+. +|++|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~---~L~~L~L 87 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF---NLRTLGL 87 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT---TCCEEEC
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc---cCCEEEC
Confidence 45666666665 344433 24667777777777666666666666677777766666655555555554 6666666
Q ss_pred CCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccccccccc
Q 004747 332 SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGE 411 (732)
Q Consensus 332 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~ 411 (732)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+++.
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 66666644444456666666666666666655555666666666666666666655555555555555555555555554
Q ss_pred CcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcC
Q 004747 412 IQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSF 491 (732)
Q Consensus 412 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 491 (732)
.+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.++.......+|++|++++|++++..+..+..+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 44445555555555555555554444445555555555555554444444333333344444444444442222333444
Q ss_pred CCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCc
Q 004747 492 QAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNL 571 (732)
Q Consensus 492 ~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 571 (732)
++|+.|+|++|.
T Consensus 248 --------------------------------------------------------------------~~L~~L~Ls~n~ 259 (477)
T 2id5_A 248 --------------------------------------------------------------------VYLRFLNLSYNP 259 (477)
T ss_dssp --------------------------------------------------------------------TTCCEEECCSSC
T ss_pred --------------------------------------------------------------------cccCeeECCCCc
Confidence 445555555555
Q ss_pred ccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceee
Q 004747 572 LHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF 646 (732)
Q Consensus 572 l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 646 (732)
+++..+..+..+++|++|+|++|++++..|. +..+++|+.|||++|++++..+..|..+++|++|++++|++.+.
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 5544445555566666666666666655555 55566666666666666655555556666666666666666543
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.9e-35 Score=305.75 Aligned_cols=258 Identities=32% Similarity=0.430 Sum_probs=227.8
Q ss_pred CCCCEEEccCCcCcc--ccCccccCCcCcceeeccc-ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCE
Q 004747 372 TYLQVIDLSHNMLSG--SIPLNIVGCFQLLALIVNN-NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI 448 (732)
Q Consensus 372 ~~L~~L~Ls~n~l~~--~~p~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 448 (732)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456777777777776 6777777777777777774 7777777778888899999999999999889988999999999
Q ss_pred EEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCC-CCCEEEccCCcCcccCCcccccCccccCcCCCCCC
Q 004747 449 VDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ-AIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRS 527 (732)
Q Consensus 449 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~-~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~ 527 (732)
|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~------------- 196 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN------------- 196 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-------------
Confidence 99999999988999999999999999999999999999999988 9999999999998888765411
Q ss_pred CCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCcc
Q 004747 528 MPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLR 607 (732)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~ 607 (732)
+. |+.|++++|++++.+|..+..+++|++|+|++|.+++.+|.+..++
T Consensus 197 -------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~ 244 (313)
T 1ogq_A 197 -------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244 (313)
T ss_dssp -------------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCT
T ss_pred -------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccC
Confidence 33 8899999999999999999999999999999999998888888899
Q ss_pred CCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCCCCCCCcCc-cccCCCCCCCCCCCCCC
Q 004747 608 SLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLESSHGEC 675 (732)
Q Consensus 608 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~-~~~gn~~lcg~~~~~~c 675 (732)
+|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+.. .+.|||.+||.|.. .|
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999999999999999999999999999999999999999877777777 89999999998765 46
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=321.09 Aligned_cols=274 Identities=20% Similarity=0.159 Sum_probs=166.7
Q ss_pred CEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCC
Q 004747 207 KHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN 286 (732)
Q Consensus 207 ~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 286 (732)
+.++.+++.++..+......+++|+|++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|++++|.++
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 56777777776555444455777777777777666667777777777777777777666666777777777777777766
Q ss_pred CcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCcccc
Q 004747 287 YEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPA 366 (732)
Q Consensus 287 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 366 (732)
...+..+..+++|++|++++|.+++..+..+..+. +|+.|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY---NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT---TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccc---cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 55445566666666666666666655555554444 566666666666555555555666666666666666554444
Q ss_pred ccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCC
Q 004747 367 RIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446 (732)
Q Consensus 367 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 446 (732)
.+.++++|+.|++++|.+.+..+.. +..+++|+.|++++|...+.+|.......+|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~------------------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYS------------------------FKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTC------------------------SCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhh------------------------cccCcccceeeCCCCccccccCcccccCccc
Confidence 5555566666666665555444444 4455555555555555554555444444456
Q ss_pred CEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCccc
Q 004747 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF 507 (732)
Q Consensus 447 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~ 507 (732)
++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE
Confidence 6666666666544444555666666666666666555555555555555555555555543
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-33 Score=302.84 Aligned_cols=332 Identities=20% Similarity=0.155 Sum_probs=190.9
Q ss_pred ccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCcc
Q 004747 248 AMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLV 327 (732)
Q Consensus 248 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~ 327 (732)
+.++++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..++ +|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~ 120 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP---LLT 120 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---TCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC---CCC
Confidence 45666666666666644444456666777777776666655555666666666666666666655555555544 666
Q ss_pred EEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccccc
Q 004747 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN 407 (732)
Q Consensus 328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 407 (732)
+|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+++|+.+++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 666666666633333346666666666666666655555666666666666666666532 12333444444444444
Q ss_pred ccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchh
Q 004747 408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW 487 (732)
Q Consensus 408 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 487 (732)
+.+. ...++|+.|++++|.+... |.. ..++|++|++++|.+++. .++..+++|++|++++|.+.+..|..
T Consensus 198 l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 198 LSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 4321 2223455555555555432 211 124455555555555432 23444444444444444444444444
Q ss_pred hhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEc
Q 004747 488 LFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDL 567 (732)
Q Consensus 488 ~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 567 (732)
+..+ ++|+.|++
T Consensus 268 ~~~l--------------------------------------------------------------------~~L~~L~L 279 (390)
T 3o6n_A 268 FVKM--------------------------------------------------------------------QRLERLYI 279 (390)
T ss_dssp GTTC--------------------------------------------------------------------SSCCEEEC
T ss_pred cccc--------------------------------------------------------------------ccCCEEEC
Confidence 4444 44555555
Q ss_pred cCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeC
Q 004747 568 SDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFV 647 (732)
Q Consensus 568 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 647 (732)
++|+++ .+|..+..+++|++|+|++|++++..+.+..+++|++|+|++|.+++. | +..+++|++|++++|++.+.-
T Consensus 280 ~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 280 SNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp CSSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCcCc-ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh
Confidence 555555 345555667778888888888874433477788888888888888754 3 667788899999999887642
Q ss_pred CCCCCCCCcCc-cccCCCCCCC
Q 004747 648 PWKQGYQKFPG-AFAGNPNLCL 668 (732)
Q Consensus 648 p~~~~~~~~~~-~~~gn~~lcg 668 (732)
.. ..+..+.. .+.+++..|.
T Consensus 356 ~~-~~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 356 LR-ALFRNVARPAVDDADQHCK 376 (390)
T ss_dssp HH-HHTTTCCTTTBCCCCSCCC
T ss_pred HH-HHHHHHHhhcccccCceec
Confidence 11 11222222 4566666664
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-33 Score=303.31 Aligned_cols=350 Identities=18% Similarity=0.152 Sum_probs=239.4
Q ss_pred CCCC-CCCCCCC-ccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECC
Q 004747 61 LSSW-VGSNCTN-WTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLS 138 (732)
Q Consensus 61 l~~w-~~~~~c~-w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 138 (732)
+++| .+.+||. |.+..|.....+ +............-..++++++|++++|.++...+..|..+++|++|+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~-----i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVH-----IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEESCE-----ECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceeeee-----eecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 5678 5667775 555555422211 22221111112222356888999999988875555557888999999999
Q ss_pred CCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCC
Q 004747 139 YNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG 218 (732)
Q Consensus 139 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 218 (732)
+|.+++..+..|..+++|++|++++| .+.+..|..++.+ ++|++|++++|.++...+..+.++++|++|++++|.+++
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCC-CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 99988777778888888888888888 4566666667777 778888888888774444445777777777777776654
Q ss_pred ccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcC
Q 004747 219 NVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEK 298 (732)
Q Consensus 219 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 298 (732)
. .+..+..+++|++|++++|.+++. .++.+++|++|++++|.+++ +...++
T Consensus 156 ~---------------------~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~ 206 (390)
T 3o6n_A 156 I---------------------EDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIA 206 (390)
T ss_dssp C---------------------CTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSS
T ss_pred c---------------------ChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCc
Confidence 3 344455566666667766666643 24556677777777776653 233456
Q ss_pred CcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEE
Q 004747 299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVID 378 (732)
Q Consensus 299 L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 378 (732)
|+.|++++|.++.. |... .++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 207 L~~L~l~~n~l~~~-~~~~-----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 207 VEELDASHNSINVV-RGPV-----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp CSEEECCSSCCCEE-ECCC-----CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred ceEEECCCCeeeec-cccc-----cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 77777777777632 3221 13688888888888743 4677788888888888888877777888888888888
Q ss_pred ccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccc
Q 004747 379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458 (732)
Q Consensus 379 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 458 (732)
+++|++++ +|..+..+++|+.|++++|++.+ +|..+..+++|+.|++++|++++. + +..+++|++|++++|.+.+
T Consensus 279 L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 88888874 45556677888888888888874 455577888999999999998854 3 6778899999999999985
Q ss_pred c
Q 004747 459 S 459 (732)
Q Consensus 459 ~ 459 (732)
.
T Consensus 354 ~ 354 (390)
T 3o6n_A 354 N 354 (390)
T ss_dssp H
T ss_pred h
Confidence 4
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-33 Score=319.86 Aligned_cols=333 Identities=21% Similarity=0.168 Sum_probs=196.1
Q ss_pred ccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCcc
Q 004747 248 AMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLV 327 (732)
Q Consensus 248 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~ 327 (732)
+.+++.+++++|.+....+..++.+++|++|++++|.+++..+..+..+++|++|+|++|.+++..|..+..++ +|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP---LLT 126 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---TCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC---CCC
Confidence 34566666666666654445556666667777766666665555666666666666666666655555555544 666
Q ss_pred EEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccccc
Q 004747 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN 407 (732)
Q Consensus 328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 407 (732)
+|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++. + +..+++|+.|++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCc
Confidence 666666666643344456666666666666666666666666666666666666666542 1 2233444444444444
Q ss_pred ccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchh
Q 004747 408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW 487 (732)
Q Consensus 408 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 487 (732)
+.+ +...++|+.|++++|.+....+ .+ .++|+.|++++|.+++. .++..+++|+.|++++|.+.+..|..
T Consensus 204 l~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 204 LST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp CSE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHH
Confidence 432 1222345555555555542221 11 13445555555554432 33444444444444444444444444
Q ss_pred hhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEc
Q 004747 488 LFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDL 567 (732)
Q Consensus 488 ~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 567 (732)
+.. +++|+.|+|
T Consensus 274 ~~~--------------------------------------------------------------------l~~L~~L~L 285 (597)
T 3oja_B 274 FVK--------------------------------------------------------------------MQRLERLYI 285 (597)
T ss_dssp GTT--------------------------------------------------------------------CSSCCEEEC
T ss_pred hcC--------------------------------------------------------------------ccCCCEEEC
Confidence 444 445555566
Q ss_pred cCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceee
Q 004747 568 SDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF 646 (732)
Q Consensus 568 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 646 (732)
++|++++ +|..+..+++|+.|+|++|.+++ +|. +..+++|+.|+|++|.+++.. +..+++|++|++++|++++.
T Consensus 286 s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 286 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 6666653 45555667778888888888874 444 777888888888888887552 56678899999999998875
Q ss_pred CCCCCCCCCcCc-cccCCCCCCCCC
Q 004747 647 VPWKQGYQKFPG-AFAGNPNLCLES 670 (732)
Q Consensus 647 ip~~~~~~~~~~-~~~gn~~lcg~~ 670 (732)
.+. ..+..+.. .+.+++..|+.+
T Consensus 361 ~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 361 SLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp HHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred hHH-HHHHHHhhhccccccccCCcc
Confidence 321 12333434 678888888763
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-33 Score=318.94 Aligned_cols=310 Identities=23% Similarity=0.234 Sum_probs=215.9
Q ss_pred CCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCc
Q 004747 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLE 183 (732)
Q Consensus 104 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~ 183 (732)
.+.+++.+++++|.+....+..|..+++|++|+|++|.+++..|..|+.+++|++|+|++| .+.+..|..++.+ ++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNV-PLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCC-CCCC
Confidence 3556667777776666544445566677777777777776666666667777777777766 4555555556666 6677
Q ss_pred EEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccccc---ccccEEECCCCcCccccCchhhcccccCeeeCCCCc
Q 004747 184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS 260 (732)
Q Consensus 184 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 260 (732)
+|+|++|.+++..+..|.++++|++|++++|.+++..+..+ .+|++|++++|.+++.. +..+++|+.|++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence 77777777664444445667777777777777766665543 34677777777666532 4456677777777776
Q ss_pred cccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCC
Q 004747 261 VVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI 340 (732)
Q Consensus 261 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~ 340 (732)
+.+. ...++|++|++++|.++...+. + .++|+.|++++|.+++. ..+..++ +|+.|++++|.+++..
T Consensus 204 l~~l-----~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~l~---~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 204 LSTL-----AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLNYP---GLVEVDLSYNELEKIM 270 (597)
T ss_dssp CSEE-----ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGGCT---TCSEEECCSSCCCEEE
T ss_pred cccc-----cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhccCC---CCCEEECCCCccCCCC
Confidence 6542 2345677788877777643222 1 35788888888888753 4455555 7888888888888777
Q ss_pred cccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCC
Q 004747 341 PLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALD 420 (732)
Q Consensus 341 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 420 (732)
|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+.. +..++
T Consensus 271 ~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~ 345 (597)
T 3oja_B 271 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHH 345 (597)
T ss_dssp SGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTC
T ss_pred HHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcC
Confidence 8888888888888888888875 5666777888888888888887 57777788888888888888887653 56778
Q ss_pred CCcEEEcccCceeeec
Q 004747 421 SLKILDISNNQISGEI 436 (732)
Q Consensus 421 ~L~~L~L~~n~l~~~~ 436 (732)
+|+.|++++|.+.+..
T Consensus 346 ~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 346 TLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCSEEECCSSCEEHHH
T ss_pred CCCEEEeeCCCCCChh
Confidence 9999999999987653
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.2e-32 Score=287.79 Aligned_cols=305 Identities=21% Similarity=0.300 Sum_probs=194.0
Q ss_pred hccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCC
Q 004747 270 ASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS 349 (732)
Q Consensus 270 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 349 (732)
..+++|++|++++|.+... + .+..+++|++|++++|.+++ ++. +..+. +|++|++++|.+++ ++ .+..+++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~---~L~~L~L~~n~i~~-~~-~~~~l~~ 111 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP-LSNLV---KLTNLYIGTNKITD-IS-ALQNLTN 111 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCT---TCCEEECCSSCCCC-CG-GGTTCTT
T ss_pred hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh-hhcCC---cCCEEEccCCcccC-ch-HHcCCCc
Confidence 3445555555555555422 2 24455555555555555542 222 33222 55555555555552 22 3555556
Q ss_pred CCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEccc
Q 004747 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISN 429 (732)
Q Consensus 350 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 429 (732)
|++|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++
T Consensus 112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 66666666655533 22 5556666666666664443322 25556666666666666554433 56677777788877
Q ss_pred CceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCC
Q 004747 430 NQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP 509 (732)
Q Consensus 430 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p 509 (732)
|.+.+..+ +..+++|+++++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+++. +
T Consensus 187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~ 259 (347)
T 4fmz_A 187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N 259 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G
T ss_pred Cccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h
Confidence 77774433 6677788888888887775544 6777888888888888774433 77778888888888877542 1
Q ss_pred cccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCcee
Q 004747 510 DGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYL 589 (732)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 589 (732)
. + ..+++|+.|++++|++++ + +.+..+++|++|
T Consensus 260 ~--~-------------------------------------------~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L 292 (347)
T 4fmz_A 260 A--V-------------------------------------------KDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSL 292 (347)
T ss_dssp G--G-------------------------------------------TTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred h--H-------------------------------------------hcCCCcCEEEccCCccCC-C-hhhcCCCCCCEE
Confidence 1 1 126678888888888874 4 357788888888
Q ss_pred ecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcce
Q 004747 590 NLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644 (732)
Q Consensus 590 ~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 644 (732)
++++|.+++..|. +..+++|++|++++|.+++..| +..+++|++||+++|+++
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888877777 7888888888888888887766 777888888888888875
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.9e-32 Score=285.69 Aligned_cols=306 Identities=23% Similarity=0.307 Sum_probs=217.0
Q ss_pred hcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 004747 246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAG 325 (732)
Q Consensus 246 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~ 325 (732)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..++ +
T Consensus 41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~---~ 111 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLT---N 111 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCT---T
T ss_pred hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCC---c
Confidence 445566666666666653 23 256666666666666666543 22 6666677777777766663 22 233333 6
Q ss_pred ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (732)
Q Consensus 326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (732)
|++|++++|.+++ ++. +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|+.|++++
T Consensus 112 L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 7777777777663 333 66677777777777755544433 6677777777777777664333 66677777777777
Q ss_pred ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccc
Q 004747 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP 485 (732)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 485 (732)
|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 258 (347)
T 4fmz_A 187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-- 258 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--
T ss_pred Cccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--
Confidence 77765443 6778888888888888875544 6778888888888888886544 77888889999988888753
Q ss_pred hhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEE
Q 004747 486 NWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGM 565 (732)
Q Consensus 486 ~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 565 (732)
..+..+++|++|++++|++++. +. + ..+++|+.|
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~-~~--~-------------------------------------------~~l~~L~~L 292 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDI-SV--L-------------------------------------------NNLSQLNSL 292 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC-GG--G-------------------------------------------GGCTTCSEE
T ss_pred hhHhcCCCcCEEEccCCccCCC-hh--h-------------------------------------------cCCCCCCEE
Confidence 4678888999999999888643 11 1 126788999
Q ss_pred EccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCc
Q 004747 566 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT 620 (732)
Q Consensus 566 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~ 620 (732)
++++|++++..|..+..+++|++|++++|.+++..| +..+++|++||+++|.++
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 999999998888889999999999999999987666 888999999999999886
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=7.5e-33 Score=290.17 Aligned_cols=276 Identities=22% Similarity=0.233 Sum_probs=173.3
Q ss_pred CCHHhHHHHHHHHhcC-CCCCCCCCCCC-----CCCCCCccceeecC--------CCCcEEEEEcCCCCCcccccccccC
Q 004747 39 LNLEDKASLLLFKSLV-QDPTQKLSSWV-----GSNCTNWTGVACNF--------QTGHVVSINLTDTSLSGQVHPRLCK 104 (732)
Q Consensus 39 ~~~~~~~~l~~~k~~~-~~~~~~l~~w~-----~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~l~~~~~~~l~~ 104 (732)
...++++||++||+.+ .++.+.+.+|. ..++|.|.|+.|+. ...+|+.|+|+++.++ .+|+.+++
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~ 102 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR 102 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence 3456778999999988 45656667882 56899999999952 3467788888888776 66777777
Q ss_pred CCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcE
Q 004747 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEK 184 (732)
Q Consensus 105 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~ 184 (732)
+++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++++++|++|++++| ...+.+|..+...
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n-~~~~~~p~~~~~~------ 173 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC-PELTELPEPLAST------ 173 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE-TTCCCCCSCSEEE------
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC-CCccccChhHhhc------
Confidence 788888888888777 67777777778888888887777 66777777777777777776 3445555544320
Q ss_pred EEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccc
Q 004747 185 LDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGG 264 (732)
Q Consensus 185 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 264 (732)
..+..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus 174 ----------~~~~~~~~l~~L~~L~L~~n~l~----------------------~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 174 ----------DASGEHQGLVNLQSLRLEWTGIR----------------------SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp ----------C-CCCEEESTTCCEEEEEEECCC----------------------CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred ----------cchhhhccCCCCCEEECcCCCcC----------------------cchHhhcCCCCCCEEEccCCCCCc-
Confidence 01112233555555555555443 233344445555555555555553
Q ss_pred cchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccc
Q 004747 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI 344 (732)
Q Consensus 265 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l 344 (732)
+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..+
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~---~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT---QLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT---TCCEEECTTCTTCCCCCGGG
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC---CCCEEeCCCCCchhhccHHH
Confidence 333455555555555555555555555555555555666655555555555555444 56666666666655666666
Q ss_pred cCCCCCCEEeccCccC
Q 004747 345 TELKSLQALFLSNNLL 360 (732)
Q Consensus 345 ~~l~~L~~L~Ls~n~l 360 (732)
..+++|+.+++..+.+
T Consensus 298 ~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQ 313 (328)
T ss_dssp GGSCTTCEEECCGGGS
T ss_pred hhccCceEEeCCHHHH
Confidence 6666666666555443
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=9.3e-35 Score=320.91 Aligned_cols=305 Identities=17% Similarity=0.111 Sum_probs=162.2
Q ss_pred CCcEEEeeCccccc----ccCcccCCCCCCCEEEeecccCCCccccc--------cccccEEECCCCcCccc----cCch
Q 004747 181 NLEKLDFSFNSFCG----EIPESLYYLKSLKHLDLEKNNLTGNVHDF--------YQSLLVLNLGSNRFSGT----LPCF 244 (732)
Q Consensus 181 ~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~~~L~~L~L~~n~l~~~----~~~~ 244 (732)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+.. ..+|++|++++|.+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46666666666653 44666777777777777777765433221 12366666666666653 2445
Q ss_pred hhcccccCeeeCCCCccccccchhhhc-----cCCCCEEEeccCCCCCc----CccccccCcCCcEEEccCCCCCCCCch
Q 004747 245 AASAMSLTVLKLDNNSVVGGIPTCIAS-----LQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLSGPLPS 315 (732)
Q Consensus 245 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 315 (732)
+..+++|++|++++|.+.+..+..+.. .++|++|++++|.++.. ++..+..+++|++|++++|.+++....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 556677777777777766544443332 44677777777766643 345555666677777776666532211
Q ss_pred hhhh-c-CCCCCccEEeCCCCcccCC----CcccccCCCCCCEEeccCccCCCccccccC-----CCCCCCEEEccCCcC
Q 004747 316 KIAQ-T-TEKAGLVLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIGEIPARIG-----NLTYLQVIDLSHNML 384 (732)
Q Consensus 316 ~~~~-l-~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l 384 (732)
.+.. + ...++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 1111 0 0123566666666665532 344445555666666666655433222221 124555555555555
Q ss_pred ccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCC-----CCCCCCEEEccCCcccc-
Q 004747 385 SGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLA-----GLKSLEIVDFSSNNLSG- 458 (732)
Q Consensus 385 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~- 458 (732)
++..... ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++
T Consensus 326 ~~~~~~~--------------------l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~ 385 (461)
T 1z7x_W 326 TAACCSH--------------------FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385 (461)
T ss_dssp BGGGHHH--------------------HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred chHHHHH--------------------HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChh
Confidence 4321100 233344455666666666655543332221 14566666666666654
Q ss_pred ---cchhhhhcCCCCCEEEcccCCCccccchhhh-----cCCCCCEEEccCCcCc
Q 004747 459 ---SLNDAITKWTNLKYFSIARNKLSGNLPNWLF-----SFQAIQMMDFSTNKFM 505 (732)
Q Consensus 459 ---~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~~~~L~~L~ls~N~l~ 505 (732)
.++..+..+++|++|++++|++++.-...+. ...+|+.|++.++.+.
T Consensus 386 ~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 386 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred hHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 4555555666666666666666533211111 1234566666555544
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=2e-34 Score=318.31 Aligned_cols=190 Identities=18% Similarity=0.167 Sum_probs=99.6
Q ss_pred cCCcEEEeeCcccccccCcc-cCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCC
Q 004747 180 MNLEKLDFSFNSFCGEIPES-LYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDN 258 (732)
Q Consensus 180 ~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 258 (732)
++|++|++++|.++...... +..+++|++|++++|.+++.... .++..+..+++|++|++++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-----------------~l~~~l~~~~~L~~L~Ls~ 65 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK-----------------DISSALRVNPALAELNLRS 65 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH-----------------HHHHHHHTCTTCCEEECTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHH-----------------HHHHHHHhCCCcCEEeCCC
Confidence 46677777777766433322 55666777777777666532111 2234444555666666666
Q ss_pred Cccccccchhhh-ccC----CCCEEEeccCCCCC----cCccccccCcCCcEEEccCCCCCCCCchhhhhc--CCCCCcc
Q 004747 259 NSVVGGIPTCIA-SLQ----ALTHLNLSHNHLNY----EISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQT--TEKAGLV 327 (732)
Q Consensus 259 n~l~~~~~~~l~-~l~----~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~~~~L~ 327 (732)
|.+.+..+..+. .++ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..+... ...++|+
T Consensus 66 n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 145 (461)
T 1z7x_W 66 NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145 (461)
T ss_dssp CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcce
Confidence 665543333332 233 46666666666653 335556666666666666666654333333321 1122466
Q ss_pred EEeCCCCcccCC----CcccccCCCCCCEEeccCccCCCccccccC-----CCCCCCEEEccCCcCcc
Q 004747 328 LLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIGEIPARIG-----NLTYLQVIDLSHNMLSG 386 (732)
Q Consensus 328 ~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~ 386 (732)
+|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++
T Consensus 146 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred EEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 666666666542 233444456666666666665543332222 23456666666665553
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.8e-30 Score=270.58 Aligned_cols=288 Identities=19% Similarity=0.212 Sum_probs=210.2
Q ss_pred CCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCC
Q 004747 206 LKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL 285 (732)
Q Consensus 206 L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 285 (732)
++.++++++.++..+....+.+++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+
T Consensus 33 l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112 (330)
T ss_dssp TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC
Confidence 44444444444333222233455555555555555555677777888888888888777677788888888888888877
Q ss_pred CCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccC--CCcccccCCCCCCEEeccCccCCCc
Q 004747 286 NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG--EIPLKITELKSLQALFLSNNLLIGE 363 (732)
Q Consensus 286 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~ 363 (732)
+ .+|..+. ++|++|++++|.+++..+..+..+. +|++|++++|.++. ..+..+..+++|++|++++|.++ .
T Consensus 113 ~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 185 (330)
T 1xku_A 113 K-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLN---QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 185 (330)
T ss_dssp S-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT---TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred C-ccChhhc--ccccEEECCCCcccccCHhHhcCCc---cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-c
Confidence 6 4444443 6788888888888766665666655 78888888888753 55667778888888888888887 3
Q ss_pred cccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCC
Q 004747 364 IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL 443 (732)
Q Consensus 364 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 443 (732)
+|..+. ++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 555443 78888888888888777788888888888888888888877777888889999999999888 777788888
Q ss_pred CCCCEEEccCCcccccchhhhhc------CCCCCEEEcccCCCcc--ccchhhhcCCCCCEEEccCCc
Q 004747 444 KSLEIVDFSSNNLSGSLNDAITK------WTNLKYFSIARNKLSG--NLPNWLFSFQAIQMMDFSTNK 503 (732)
Q Consensus 444 ~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~N~l~~--~~p~~~~~~~~L~~L~ls~N~ 503 (732)
++|++|++++|++++..+..|.. ...++.+++++|++.. ..|..+..+.+++.+++++|+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 99999999999988766666643 3778899999998863 456778888999999998885
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.5e-30 Score=272.26 Aligned_cols=288 Identities=22% Similarity=0.248 Sum_probs=226.5
Q ss_pred CCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCC
Q 004747 205 SLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH 284 (732)
Q Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 284 (732)
+++.++++++.++..+.....++++|++++|.+++..|..+..+++|++|++++|.+++..|..++++++|++|++++|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 45666666666654444444557777777777776667778888888888888888887778888888888888888888
Q ss_pred CCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCccc--CCCcccccCCCCCCEEeccCccCCC
Q 004747 285 LNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS--GEIPLKITELKSLQALFLSNNLLIG 362 (732)
Q Consensus 285 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~ 362 (732)
++ .+|..+. ++|++|++++|.+++..+..+..++ +|+.|++++|.++ +..|..+..+ +|++|++++|.+++
T Consensus 114 l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 114 LV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLR---NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCS---SCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCc---cCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 87 4555444 7888888888888865555566555 8888999988885 3566777777 89999999999885
Q ss_pred ccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCC
Q 004747 363 EIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG 442 (732)
Q Consensus 363 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 442 (732)
+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 555443 78889999999998877788888999999999999998888878889999999999999998 77888889
Q ss_pred CCCCCEEEccCCcccccchhhhhc------CCCCCEEEcccCCCc--cccchhhhcCCCCCEEEccCCc
Q 004747 443 LKSLEIVDFSSNNLSGSLNDAITK------WTNLKYFSIARNKLS--GNLPNWLFSFQAIQMMDFSTNK 503 (732)
Q Consensus 443 l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~N~l~--~~~p~~~~~~~~L~~L~ls~N~ 503 (732)
+++|++|++++|++++..+..+.. ..+|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999999998776666654 367899999999987 5667888889999999998875
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.4e-30 Score=268.89 Aligned_cols=295 Identities=20% Similarity=0.215 Sum_probs=171.1
Q ss_pred CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747 107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186 (732)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~ 186 (732)
+++.++++++.++ .+|..+. +.|++|++++|.+++..+..|+++++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n---------------------- 86 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN---------------------- 86 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS----------------------
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC----------------------
Confidence 4677777777766 3454433 56777777777777666656666666666666655
Q ss_pred eeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCcccc--c
Q 004747 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG--G 264 (732)
Q Consensus 187 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~ 264 (732)
.+++..|..+.++++|++|++++|.++......+.+|++|++++|.+++..+..+..+++|++|++++|.+.. .
T Consensus 87 ----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 162 (330)
T 1xku_A 87 ----KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162 (330)
T ss_dssp ----CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred ----cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc
Confidence 3444445555555555555555555554333333445555555555555555556667777777777776642 4
Q ss_pred cchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccc
Q 004747 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI 344 (732)
Q Consensus 265 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l 344 (732)
.+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+++..|..+..+. +|++|++++|.+++..+..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLN---NLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCT---TCCEEECCSSCCCEECTTTG
T ss_pred ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCC---CCCEEECCCCcCceeChhhc
Confidence 55566667777777777776653 333322 5566666666666555454554444 56666666666655444455
Q ss_pred cCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcE
Q 004747 345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI 424 (732)
Q Consensus 345 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 424 (732)
..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.... .....+.++.
T Consensus 237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~ 297 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSG 297 (330)
T ss_dssp GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSE
T ss_pred cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccc
Confidence 55666666666666655 4555555666666666666666543333332110 0012356777
Q ss_pred EEcccCceee--eccccCCCCCCCCEEEccCCc
Q 004747 425 LDISNNQISG--EIPLTLAGLKSLEIVDFSSNN 455 (732)
Q Consensus 425 L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~ 455 (732)
|++++|.+.. ..|..|..+.+++.+++++|+
T Consensus 298 l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred eEeecCcccccccCccccccccceeEEEecccC
Confidence 7888777653 445667777888888887774
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.8e-30 Score=270.82 Aligned_cols=288 Identities=19% Similarity=0.203 Sum_probs=152.9
Q ss_pred CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747 107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186 (732)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~ 186 (732)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..|..|.+++ +|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~--------------------------~L~~L~ 84 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQ--------------------------HLYALV 84 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCT--------------------------TCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCC--------------------------CCcEEE
Confidence 4555555555554 3333332 3555555555555544444444444 455555
Q ss_pred eeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCcccc--c
Q 004747 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG--G 264 (732)
Q Consensus 187 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~ 264 (732)
+++|.+++..|..+.++++|++|++++|.++...+..+.+|++|++++|.+++..+..+..+++|++|++++|.++. .
T Consensus 85 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 164 (332)
T 2ft3_A 85 LVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164 (332)
T ss_dssp CCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS
T ss_pred CCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC
Confidence 55555555556666666667777766666654333333345555555555544444445555555555555555532 3
Q ss_pred cchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccc
Q 004747 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI 344 (732)
Q Consensus 265 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l 344 (732)
.+..+..+ +|++|++++|.+++ +|..+. + +|++|++++|.+++..+..+
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~---------------------------~L~~L~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--E---------------------------TLNELHLDHNKIQAIELEDL 213 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--S---------------------------SCSCCBCCSSCCCCCCTTSS
T ss_pred CcccccCC-ccCEEECcCCCCCc-cCcccc--C---------------------------CCCEEECCCCcCCccCHHHh
Confidence 33344444 44555555544442 222211 3 45555555555554444455
Q ss_pred cCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccC------
Q 004747 345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA------ 418 (732)
Q Consensus 345 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------ 418 (732)
..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..+..
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence 55555555555555555444444555555555555555555 44555555555555555555555444444432
Q ss_pred CCCCcEEEcccCcee--eeccccCCCCCCCCEEEccCCc
Q 004747 419 LDSLKILDISNNQIS--GEIPLTLAGLKSLEIVDFSSNN 455 (732)
Q Consensus 419 l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~Ls~N~ 455 (732)
...|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 356788888888876 5566778888888888888774
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=4.9e-32 Score=309.02 Aligned_cols=323 Identities=14% Similarity=0.041 Sum_probs=178.9
Q ss_pred ccCCCCEEEeccCCCCC----cCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCccc---CCCccc
Q 004747 271 SLQALTHLNLSHNHLNY----EISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS---GEIPLK 343 (732)
Q Consensus 271 ~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~---~~~p~~ 343 (732)
.+++|++|++++|.+++ .++..+..+++|+.|++++|.+.+ +|..+..++ +|+.|+++..... +..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~---~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA---NLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT---TCCEEEECBCCCCTTCTTSSSC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh---HHHhhcccccccccchHHHHHH
Confidence 34444444444444431 122223344444455554444442 333333333 4455554432111 122334
Q ss_pred ccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccC-ccccCCcCcceeecccccccccCcccccCCCCC
Q 004747 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP-LNIVGCFQLLALIVNNNNLSGEIQPELDALDSL 422 (732)
Q Consensus 344 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 422 (732)
+..+++|+.|+++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|+.|++.++...+.++.....+++|
T Consensus 266 l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred hhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 4455566666665542 22455555556666666666666543322 223455666666665222222233333556777
Q ss_pred cEEEccc-----------Cceeee-ccccCCCCCCCCEEEccCCcccccchhhhhc-CCCCCEEEcc----cCCCccc--
Q 004747 423 KILDISN-----------NQISGE-IPLTLAGLKSLEIVDFSSNNLSGSLNDAITK-WTNLKYFSIA----RNKLSGN-- 483 (732)
Q Consensus 423 ~~L~L~~-----------n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~-- 483 (732)
++|++++ |.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 7777773 455433 2222345777888888777777766666654 7788888885 5566642
Q ss_pred ---cchhhhcCCCCCEEEccCCc--CcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhh
Q 004747 484 ---LPNWLFSFQAIQMMDFSTNK--FMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQ 558 (732)
Q Consensus 484 ---~p~~~~~~~~L~~L~ls~N~--l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (732)
++..+..+++|+.|++++|. +++..+..+ ...
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-------------------------------------------~~~ 461 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-------------------------------------------GQY 461 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-------------------------------------------HHS
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-------------------------------------------HHh
Confidence 44446667888888886543 332221111 112
Q ss_pred cccceEEEccCCccccc-CCcccccccCCceeecccccceec-CCc-ccCccCCcEEeCCCCcCcccCCcCC-CCCCCCC
Q 004747 559 LFSAVGMDLSDNLLHGT-IPKGLFQLQGLEYLNLSFNFLDGQ-VPG-LYRLRSLRALDLSHNSLTGQIPGNI-SSLQELT 634 (732)
Q Consensus 559 l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~~~-ip~-l~~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L~ 634 (732)
+++|+.|++++|++++. ++..+..+++|++|++++|.+++. ++. +..+++|++|+|++|++++.....+ ..++.+.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~ 541 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN 541 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEE
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcE
Confidence 56788888888888763 444556778888888888887654 333 4568888888888888876543333 2456666
Q ss_pred EEEcccC
Q 004747 635 LLNLSYN 641 (732)
Q Consensus 635 ~L~ls~N 641 (732)
...+..+
T Consensus 542 ~~~~~~~ 548 (592)
T 3ogk_B 542 IELIPSR 548 (592)
T ss_dssp EEEECCC
T ss_pred EEEecCc
Confidence 6555544
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=4.7e-31 Score=300.91 Aligned_cols=403 Identities=14% Similarity=0.082 Sum_probs=206.8
Q ss_pred CCCCCCEEeCCCCCCCCCcCCchhhhcccC-CcEEEeeCcc-ccc-ccCcccCCCCCCCEEEeecccCCCcc-------c
Q 004747 152 KLRNLRELILKGNPELGGVFPGWVGNFSMN-LEKLDFSFNS-FCG-EIPESLYYLKSLKHLDLEKNNLTGNV-------H 221 (732)
Q Consensus 152 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~-L~~L~Ls~n~-l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~-------~ 221 (732)
.+++|++|+|++| .+++..+.++....++ |++|++++|. ++. .++....++++|++|+|++|.+++.. +
T Consensus 110 ~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 4555555555555 2333333333331123 6666666554 111 11222235666666666666654431 1
Q ss_pred cccccccEEECCCCcCc----cccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCC---CcCccccc
Q 004747 222 DFYQSLLVLNLGSNRFS----GTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN---YEISPRLV 294 (732)
Q Consensus 222 ~~~~~L~~L~L~~n~l~----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~ 294 (732)
..+++|++|++++|.++ +.++..+.++++|++|++++|.+.+ ++..+..+++|++|+++..... ...+..+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 12344555555555554 2334445566777777777777664 5566677777777777643222 12233444
Q ss_pred cCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCc-ccccCCCCCCEEeccCccCCCccccccCCCCC
Q 004747 295 FFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP-LKITELKSLQALFLSNNLLIGEIPARIGNLTY 373 (732)
Q Consensus 295 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 373 (732)
.+++|+.++++++.. +.+|..+..++ +|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++
T Consensus 268 ~~~~L~~L~l~~~~~-~~l~~~~~~~~---~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGP-NEMPILFPFAA---QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCTTCCEEEETTCCT-TTGGGGGGGGG---GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred ccccccccCccccch-hHHHHHHhhcC---CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 555555555555322 23343333333 45555555555432221 22344455555555422111122222233444
Q ss_pred CCEEEccC-CcCccccCccccCCcCcceeeccccccccc-CcccccCCCCCcEEEcccCceeeeccccCCC-CCCCCEEE
Q 004747 374 LQVIDLSH-NMLSGSIPLNIVGCFQLLALIVNNNNLSGE-IQPELDALDSLKILDISNNQISGEIPLTLAG-LKSLEIVD 450 (732)
Q Consensus 374 L~~L~Ls~-n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~ 450 (732)
|++|++++ .... ..-.. .+.+++. +......+++|++|+++.|.+++..+..+.. +++|+.|+
T Consensus 344 L~~L~L~~g~~~~----~~~~~----------~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~ 409 (592)
T 3ogk_B 344 LKRLRIERGADEQ----GMEDE----------EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409 (592)
T ss_dssp CCEEEEECCCCSS----TTSST----------TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEE
T ss_pred CCEEEeecCcccc----ccccc----------cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEE
Confidence 45554441 0000 00000 1233322 1112334667777777777776655554443 67777777
Q ss_pred cc----CCccccc-----chhhhhcCCCCCEEEcccCC--Cccccchhhh-cCCCCCEEEccCCcCcccCCcccccCccc
Q 004747 451 FS----SNNLSGS-----LNDAITKWTNLKYFSIARNK--LSGNLPNWLF-SFQAIQMMDFSTNKFMGFIPDGNFNFSLN 518 (732)
Q Consensus 451 Ls----~N~l~~~-----~~~~~~~l~~L~~L~L~~N~--l~~~~p~~~~-~~~~L~~L~ls~N~l~~~~p~~~~~~~~~ 518 (732)
++ .|.+++. ++..+..+++|++|++++|. +++..+..+. .+++|++|++++|++++......
T Consensus 410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~------ 483 (592)
T 3ogk_B 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF------ 483 (592)
T ss_dssp EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH------
T ss_pred EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH------
Confidence 75 5566653 44445667778888776433 5544444443 37778888888777654211111
Q ss_pred cCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCccccc-CCcccccccCCceeecccccce
Q 004747 519 FNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGT-IPKGLFQLQGLEYLNLSFNFLD 597 (732)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~ 597 (732)
...+++|+.|++++|.+++. ++.....+++|++|+|++|+++
T Consensus 484 -------------------------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 484 -------------------------------------SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp -------------------------------------HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred -------------------------------------HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 12256778888888887655 3444456888888888888887
Q ss_pred ecCCc-c-cCccCCcEEeCCCC
Q 004747 598 GQVPG-L-YRLRSLRALDLSHN 617 (732)
Q Consensus 598 ~~ip~-l-~~l~~L~~LdLs~N 617 (732)
+.-.. + ..++.+....+..+
T Consensus 527 ~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 527 MTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp TTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHHHhCCCcEEEEecCc
Confidence 54322 2 34666666655554
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=269.61 Aligned_cols=285 Identities=21% Similarity=0.187 Sum_probs=182.1
Q ss_pred CCCCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCC
Q 004747 66 GSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV 145 (732)
Q Consensus 66 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 145 (732)
...+|.|.++ |+ .++++++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|.+++.
T Consensus 26 ~~~~C~~~~~-c~----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (353)
T 2z80_A 26 ASLSCDRNGI-CK----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91 (353)
T ss_dssp -CCEECTTSE-EE----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cCCCCCCCeE-ee----------CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc
Confidence 3456888877 65 3455555 4555554 5899999999999977676899999999999999999988
Q ss_pred CCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccC-cccCCCCCCCEEEeeccc-CCCccccc
Q 004747 146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP-ESLYYLKSLKHLDLEKNN-LTGNVHDF 223 (732)
Q Consensus 146 ~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~-l~~~~~~~ 223 (732)
.|..|.++++|++|++++| .+++..+..+..+ ++|++|++++|.+++..+ ..+.++++|++|++++|. +.+..+
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-- 167 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPL-SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-- 167 (353)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTC-TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--
T ss_pred CHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCC-ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH--
Confidence 8888999999999999999 4555444447777 899999999999885433 368889999999998884 443333
Q ss_pred cccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEE
Q 004747 224 YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLD 303 (732)
Q Consensus 224 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 303 (732)
..+..+++|++|++++|.+.+..|..++.+++|++|++++|.++...+..+..+++|+.|+
T Consensus 168 -------------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 168 -------------------KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp -------------------TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred -------------------HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEE
Confidence 3334444444555555544444444444555555555555544322222223345555555
Q ss_pred ccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccC----CCcccccCCCCCCEEeccCccCCCccccc-cCCCCCCCEEE
Q 004747 304 LSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG----EIPLKITELKSLQALFLSNNLLIGEIPAR-IGNLTYLQVID 378 (732)
Q Consensus 304 Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~ 378 (732)
+++|.+++..+..+........++.++++++.+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|+
T Consensus 229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIW 307 (353)
T ss_dssp EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEE
Confidence 55555544333333222222345555665555543 35566667777777777777776 44444 46777777777
Q ss_pred ccCCcCcccc
Q 004747 379 LSHNMLSGSI 388 (732)
Q Consensus 379 Ls~n~l~~~~ 388 (732)
+++|.+.+..
T Consensus 308 L~~N~~~~~~ 317 (353)
T 2z80_A 308 LHTNPWDCSC 317 (353)
T ss_dssp CCSSCBCCCH
T ss_pred eeCCCccCcC
Confidence 7777766543
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=9.8e-29 Score=262.37 Aligned_cols=278 Identities=20% Similarity=0.170 Sum_probs=152.9
Q ss_pred CcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEE
Q 004747 299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVID 378 (732)
Q Consensus 299 L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 378 (732)
....+++++.++ .+|..+.. +|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 33 ~~~c~~~~~~l~-~iP~~~~~-----~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 33 NGICKGSSGSLN-SIPSGLTE-----AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp TSEEECCSTTCS-SCCTTCCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CeEeeCCCCCcc-cccccccc-----cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 334455555554 34433221 455666666666543344555566666666666666555455556666666666
Q ss_pred ccCCcCccccCccccCCcCcceeecccccccccCc-ccccCCCCCcEEEcccC-ceeeeccccCCCCCCCCEEEccCCcc
Q 004747 379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQ-PELDALDSLKILDISNN-QISGEIPLTLAGLKSLEIVDFSSNNL 456 (732)
Q Consensus 379 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l 456 (732)
+++|.+++..+..+..+++|++|++++|++.+... ..+..+++|++|++++| .+.+..+..+.++++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 66666554333334555555555555555553333 34555666666666666 34444455566666666666666666
Q ss_pred cccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCC
Q 004747 457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLP 536 (732)
Q Consensus 457 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (732)
++..|..+..+++|++|++++|++....+..+..+++|+.|++++|.+++..+..+.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~----------------------- 243 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS----------------------- 243 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc-----------------------
Confidence 655566666666666666666666432222333456666666666665543222110
Q ss_pred CceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeeccccccee----cCCc-ccCccCCcE
Q 004747 537 RSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG----QVPG-LYRLRSLRA 611 (732)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~----~ip~-l~~l~~L~~ 611 (732)
.......++.++|++|.+++ .+|. +..+++|++
T Consensus 244 ------------------------------------------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~ 281 (353)
T 2z80_A 244 ------------------------------------------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281 (353)
T ss_dssp ---------------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred ------------------------------------------cccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence 00012233344444444433 3444 666777777
Q ss_pred EeCCCCcCcccCCcC-CCCCCCCCEEEcccCcceeeCC
Q 004747 612 LDLSHNSLTGQIPGN-ISSLQELTLLNLSYNSFSGFVP 648 (732)
Q Consensus 612 LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip 648 (732)
|||++|+++ .+|.. |..+++|++|++++|++.+..|
T Consensus 282 L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 282 LEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 777777777 44444 5777788888888887777655
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=8.9e-28 Score=249.70 Aligned_cols=252 Identities=25% Similarity=0.276 Sum_probs=193.6
Q ss_pred ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (732)
Q Consensus 326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (732)
-+.++++++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++...
T Consensus 9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----------------- 68 (306)
T 2z66_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG----------------- 68 (306)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE-----------------
T ss_pred CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc-----------------
Confidence 346777777776 5665443 57777888777777444444677777777777777765211
Q ss_pred ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccch-hhhhcCCCCCEEEcccCCCcccc
Q 004747 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNL 484 (732)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~ 484 (732)
..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..
T Consensus 69 -----~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 69 -----CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp -----EEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred -----CcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 11233455677888888888877 455667778888888888888876544 56777888888888888888777
Q ss_pred chhhhcCCCCCEEEccCCcCcc-cCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccce
Q 004747 485 PNWLFSFQAIQMMDFSTNKFMG-FIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAV 563 (732)
Q Consensus 485 p~~~~~~~~L~~L~ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 563 (732)
+..+..+++|++|++++|.+++ .+|..+ . .+++|+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~-------------------------------------------~l~~L~ 178 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIF-T-------------------------------------------ELRNLT 178 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCC-T-------------------------------------------TCTTCC
T ss_pred hhhcccCcCCCEEECCCCccccccchhHH-h-------------------------------------------hCcCCC
Confidence 8888888888888888888875 333321 1 267888
Q ss_pred EEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCC-CCCEEEcccC
Q 004747 564 GMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ-ELTLLNLSYN 641 (732)
Q Consensus 564 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N 641 (732)
+|++++|++++..|..+..+++|++|+|++|++++..+. +..+++|++|||++|++++..|..+..++ +|++|++++|
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 999999999987888899999999999999999977665 88899999999999999999999999984 9999999999
Q ss_pred cceeeC
Q 004747 642 SFSGFV 647 (732)
Q Consensus 642 ~l~g~i 647 (732)
++++..
T Consensus 259 ~~~~~c 264 (306)
T 2z66_A 259 DFACTC 264 (306)
T ss_dssp CEECSG
T ss_pred Ceeccc
Confidence 998753
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=9.4e-28 Score=249.49 Aligned_cols=279 Identities=21% Similarity=0.211 Sum_probs=179.5
Q ss_pred EEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccc--cchhhhccCCCCEEEeccCCC
Q 004747 208 HLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGG--IPTCIASLQALTHLNLSHNHL 285 (732)
Q Consensus 208 ~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l 285 (732)
.++.+++.++..+.....+|++|++++|.++...+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence 344444444433333333455555555555533344466777788888888877632 356666778888888888877
Q ss_pred CCcCccccccCcCCcEEEccCCCCCCCCc-hhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCC-c
Q 004747 286 NYEISPRLVFFEKLLLLDLSFNDLSGPLP-SKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG-E 363 (732)
Q Consensus 286 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ 363 (732)
+ .+|..+..+++|++|++++|.+++..+ ..+..+. +|++|++++|.+++..+..+..+++|++|++++|.+++ .
T Consensus 91 ~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 91 I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR---NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp E-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT---TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred c-cChhhcCCCCCCCEEECCCCcccccccchhhhhcc---CCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 6 456667777888888888887775433 2344444 77788888887776677777777788888888887775 4
Q ss_pred cccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCC
Q 004747 364 IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL 443 (732)
Q Consensus 364 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 443 (732)
+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 66777777788888888887776666677777777777777777766666566677777777777777777666666666
Q ss_pred C-CCCEEEccCCcccccch-hh-hhcCCCCCEEEcccCCCccccchhhhc
Q 004747 444 K-SLEIVDFSSNNLSGSLN-DA-ITKWTNLKYFSIARNKLSGNLPNWLFS 490 (732)
Q Consensus 444 ~-~L~~L~Ls~N~l~~~~~-~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~ 490 (732)
+ +|++|++++|.+++..+ .+ ...+...+.+.+..+.+....|..+.+
T Consensus 247 ~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp CTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred hccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 3 67777777777764321 11 111222333344445555555554443
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.8e-29 Score=262.90 Aligned_cols=249 Identities=24% Similarity=0.273 Sum_probs=168.7
Q ss_pred cCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCc-cccCcccc-------CCcCcceeecccccccccCcccc
Q 004747 345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS-GSIPLNIV-------GCFQLLALIVNNNNLSGEIQPEL 416 (732)
Q Consensus 345 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~~~~L~~L~l~~n~l~~~~~~~~ 416 (732)
+..++|+.|++++|.+ .+|..+... |+.|++++|.+. +.+|..+. ++++|++|++++|.+++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4445666677777766 455544433 666666666663 34554443 56667777777777776666654
Q ss_pred --cCCCCCcEEEcccCceeeeccccCCCC-----CCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccc--cchh
Q 004747 417 --DALDSLKILDISNNQISGEIPLTLAGL-----KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN--LPNW 487 (732)
Q Consensus 417 --~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~ 487 (732)
..+++|++|++++|++++. |..+..+ ++|++|++++|++++..+..++.+++|++|++++|++.+. .|..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 6677777777777777755 5555544 6777777777777766667777777777777777776654 2333
Q ss_pred h--hcCCCCCEEEccCCcCcc--cCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccce
Q 004747 488 L--FSFQAIQMMDFSTNKFMG--FIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAV 563 (732)
Q Consensus 488 ~--~~~~~L~~L~ls~N~l~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 563 (732)
+ ..+++|++|++++|++++ .++... ...+++|+
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------------------------------------------~~~l~~L~ 231 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSAL-------------------------------------------AAARVQLQ 231 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHH-------------------------------------------HHTTCCCS
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHH-------------------------------------------HhcCCCCC
Confidence 3 667777777777777752 111111 11256778
Q ss_pred EEEccCCcccccCC-cccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccC
Q 004747 564 GMDLSDNLLHGTIP-KGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 641 (732)
Q Consensus 564 ~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 641 (732)
.||+++|++++.+| ..+..+++|++|+|++|+++ .+|. +. ++|++|||++|++++. |. +..+++|++|++++|
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTC
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCC
Confidence 88888888887664 34556788888888888887 6666 54 7888888888888866 65 888888888888888
Q ss_pred cceee
Q 004747 642 SFSGF 646 (732)
Q Consensus 642 ~l~g~ 646 (732)
++++.
T Consensus 307 ~l~~~ 311 (312)
T 1wwl_A 307 PFLDS 311 (312)
T ss_dssp TTTCC
T ss_pred CCCCC
Confidence 88753
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=8.3e-27 Score=256.09 Aligned_cols=247 Identities=18% Similarity=0.186 Sum_probs=170.8
Q ss_pred ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (732)
Q Consensus 326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (732)
...++.++..++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~---------------- 116 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV---------------- 116 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT----------------
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh----------------
Confidence 345566666665 4554332 456666666666655555555556666666666655554444
Q ss_pred ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCcccc-
Q 004747 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL- 484 (732)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~- 484 (732)
..|.++++|++|+|++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|+..+.+
T Consensus 117 --------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 117 --------GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp --------TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred --------hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 44555566666666666666544455666666666666666666555555666666666666664333333
Q ss_pred chhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceE
Q 004747 485 PNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVG 564 (732)
Q Consensus 485 p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 564 (732)
+..+..+++|++|++++|++++. |. + ..+++|+.
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~-~~--~-------------------------------------------~~l~~L~~ 222 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDM-PN--L-------------------------------------------TPLVGLEE 222 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSC-CC--C-------------------------------------------TTCTTCCE
T ss_pred hhhccCCCCCCEEECCCCccccc-cc--c-------------------------------------------cccccccE
Confidence 33566777777777777777532 21 0 12677889
Q ss_pred EEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcc
Q 004747 565 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 643 (732)
Q Consensus 565 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 643 (732)
|+|++|++++..|..+.++++|+.|+|++|++++..|. +..+++|+.|||++|++++..+..|..+++|+.|++++|++
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 99999999988888899999999999999999988887 88899999999999999988888889999999999999998
Q ss_pred ee
Q 004747 644 SG 645 (732)
Q Consensus 644 ~g 645 (732)
..
T Consensus 303 ~C 304 (452)
T 3zyi_A 303 NC 304 (452)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=8.7e-29 Score=258.39 Aligned_cols=266 Identities=18% Similarity=0.154 Sum_probs=186.2
Q ss_pred ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (732)
Q Consensus 326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (732)
++..+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3444444444443333333444555555555555555555555555566666666655554332 55555555555555
Q ss_pred ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccc
Q 004747 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP 485 (732)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 485 (732)
|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|++.+..+
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 5554322 2368888888888888665443 5778889999998887777788888889999999998887777
Q ss_pred hhhh-cCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceE
Q 004747 486 NWLF-SFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVG 564 (732)
Q Consensus 486 ~~~~-~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 564 (732)
..+. .+++|++|++++|.+++. |... .+++|+.
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~~~---------------------------------------------~l~~L~~ 195 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KGQV---------------------------------------------VFAKLKT 195 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-ECCC---------------------------------------------CCTTCCE
T ss_pred HHHhhccCcCCEEECCCCcCccc-cccc---------------------------------------------ccccCCE
Confidence 6664 688899999999888643 1110 1567888
Q ss_pred EEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCc-ccCCcCCCCCCCCCEEEccc-C
Q 004747 565 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLT-GQIPGNISSLQELTLLNLSY-N 641 (732)
Q Consensus 565 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls~-N 641 (732)
|++++|+++ .+|..+..+++|++|+|++|++++ +|. +..+++|+.|++++|.++ +.+|..+..++.|+.+++++ +
T Consensus 196 L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp EECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred EECCCCcCC-cchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 999999998 466668889999999999999985 455 888899999999999998 77888888888999999884 4
Q ss_pred cceeeCCC
Q 004747 642 SFSGFVPW 649 (732)
Q Consensus 642 ~l~g~ip~ 649 (732)
.+.|..|.
T Consensus 274 ~l~~~~~~ 281 (317)
T 3o53_A 274 KLTGQNEE 281 (317)
T ss_dssp HHHSSSSC
T ss_pred hccCCchh
Confidence 56776553
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=253.42 Aligned_cols=247 Identities=18% Similarity=0.210 Sum_probs=169.6
Q ss_pred ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (732)
Q Consensus 326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (732)
...++.++..++ .+|..+. ++++.|+|++|++++..+..|.++++|++|++++|.+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------------------- 102 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT------------------- 102 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE-------------------
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc-------------------
Confidence 345555555555 4554433 355555555555555444555555555555555555554
Q ss_pred ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCcccc-
Q 004747 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL- 484 (732)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~- 484 (732)
..+..|.++++|++|+|++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|+..+.+
T Consensus 103 -----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 103 -----IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp -----ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred -----cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 44444555666666666666666444445666666666666666666555556666666666666664433333
Q ss_pred chhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceE
Q 004747 485 PNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVG 564 (732)
Q Consensus 485 p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 564 (732)
+..+..+++|++|++++|+++. +|. + ..+++|+.
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~-~~~--~-------------------------------------------~~l~~L~~ 211 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLRE-IPN--L-------------------------------------------TPLIKLDE 211 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCSS-CCC--C-------------------------------------------TTCSSCCE
T ss_pred cchhhcccccCeecCCCCcCcc-ccc--c-------------------------------------------CCCcccCE
Confidence 3356677777777777777652 221 1 12677888
Q ss_pred EEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcc
Q 004747 565 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 643 (732)
Q Consensus 565 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 643 (732)
|||++|++++..|..+.++++|+.|+|++|++++..+. +.++++|+.|||++|++++..+..|..+++|+.|++++|++
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 99999999988888899999999999999999988787 88899999999999999988888889999999999999998
Q ss_pred ee
Q 004747 644 SG 645 (732)
Q Consensus 644 ~g 645 (732)
..
T Consensus 292 ~C 293 (440)
T 3zyj_A 292 NC 293 (440)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.4e-28 Score=256.12 Aligned_cols=256 Identities=21% Similarity=0.196 Sum_probs=184.7
Q ss_pred cccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCccc-CCCccccc-------CCCCCCEEeccCccCCCcc
Q 004747 293 LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS-GEIPLKIT-------ELKSLQALFLSNNLLIGEI 364 (732)
Q Consensus 293 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~ 364 (732)
++..++|+.+++++|.+ .+|..+.. .|+.|++++|.++ ..+|..+. .+++|++|++++|.+++.+
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD-----IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH-----HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHH-----HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence 45567888899999998 67776665 4888889888884 44665554 6788888888888888877
Q ss_pred cccc--CCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCC
Q 004747 365 PARI--GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG 442 (732)
Q Consensus 365 p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 442 (732)
|..+ ..+++|++|++++|.+++. |..+..+.. ..+++|++|++++|++++..|..+..
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~-------------------~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 112 PPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQ-------------------WLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp CCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT-------------------TCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred HHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHH-------------------hhcCCCcEEEeeCCCCccchHHHhcc
Confidence 7765 7788888888888888765 655443300 01256777777777777666666777
Q ss_pred CCCCCEEEccCCccccc--chhhh--hcCCCCCEEEcccCCCcc--ccc-hhhhcCCCCCEEEccCCcCcccCCcccccC
Q 004747 443 LKSLEIVDFSSNNLSGS--LNDAI--TKWTNLKYFSIARNKLSG--NLP-NWLFSFQAIQMMDFSTNKFMGFIPDGNFNF 515 (732)
Q Consensus 443 l~~L~~L~Ls~N~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~--~~p-~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~ 515 (732)
+++|++|++++|++.+. .+..+ ..+++|++|++++|++++ .++ ..+..+++|++|++++|++++..|...+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 77777777777776654 23333 667777777777777762 222 334567788888888888876654332211
Q ss_pred ccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeeccccc
Q 004747 516 SLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNF 595 (732)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 595 (732)
+++|++|+|++|+++ .+|..+. ++|++|||++|+
T Consensus 252 -------------------------------------------l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 252 -------------------------------------------PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp -------------------------------------------CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC
T ss_pred -------------------------------------------cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC
Confidence 567888999999988 7888776 889999999999
Q ss_pred ceecCCcccCccCCcEEeCCCCcCccc
Q 004747 596 LDGQVPGLYRLRSLRALDLSHNSLTGQ 622 (732)
Q Consensus 596 l~~~ip~l~~l~~L~~LdLs~N~l~~~ 622 (732)
+++. |.+..+++|++|+|++|.+++.
T Consensus 286 l~~~-p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 286 LDRN-PSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCSC-CCTTTSCEEEEEECTTCTTTCC
T ss_pred CCCC-hhHhhCCCCCEEeccCCCCCCC
Confidence 9865 6688899999999999998863
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.4e-27 Score=243.77 Aligned_cols=175 Identities=18% Similarity=0.210 Sum_probs=82.8
Q ss_pred EEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccccc
Q 004747 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN 407 (732)
Q Consensus 328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 407 (732)
.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 4455555554 334322 2355555555555554444445555555555555555554444444444444444444443
Q ss_pred -ccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccch
Q 004747 408 -LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN 486 (732)
Q Consensus 408 -l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 486 (732)
+....+..+..+++|++|++++|.+++..|..+.++++|++|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 3333334444455555555555555544444445555555555555555544444444455555555555544433333
Q ss_pred hhhcCCCCCEEEccCCcCc
Q 004747 487 WLFSFQAIQMMDFSTNKFM 505 (732)
Q Consensus 487 ~~~~~~~L~~L~ls~N~l~ 505 (732)
.+..+++|+.|++++|.++
T Consensus 172 ~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp TTTTCTTCCEEECCSSCCC
T ss_pred HhcCccccCEEECCCCccc
Confidence 3444444444444444443
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=7.3e-27 Score=244.62 Aligned_cols=225 Identities=21% Similarity=0.272 Sum_probs=156.7
Q ss_pred CCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCE
Q 004747 273 QALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQA 352 (732)
Q Consensus 273 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 352 (732)
+++++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+. +|++|++++|.++ .+|..+..+++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~---~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA---GLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGT---TCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccC---CCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 44455555555544 34444444555555555555554 4444444444 4555555555554 44555555555555
Q ss_pred EeccCccCCCccccccC---------CCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCc
Q 004747 353 LFLSNNLLIGEIPARIG---------NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK 423 (732)
Q Consensus 353 L~Ls~n~l~~~~p~~l~---------~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 423 (732)
|++++|++.+.+|..+. ++++|++|++++|.++ .+|..+..+++|+.|++++|.+++ +|..+..+++|+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~ 232 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCC
Confidence 55555555555554443 3777777777777777 667777777777777777777775 444578888899
Q ss_pred EEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCc
Q 004747 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503 (732)
Q Consensus 424 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~ 503 (732)
+|++++|.+.+.+|..+.++++|++|++++|.+.+.+|.++..+++|++|++++|++.+.+|..+..+++++.+++..+.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 99999988888888888889999999999988888888888889999999999999988999999999999999888766
Q ss_pred Cc
Q 004747 504 FM 505 (732)
Q Consensus 504 l~ 505 (732)
+.
T Consensus 313 ~~ 314 (328)
T 4fcg_A 313 QA 314 (328)
T ss_dssp SC
T ss_pred HH
Confidence 53
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.2e-26 Score=238.41 Aligned_cols=225 Identities=22% Similarity=0.195 Sum_probs=121.3
Q ss_pred CeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeC
Q 004747 252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL 331 (732)
Q Consensus 252 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~L 331 (732)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..++ +|++|++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA---LLEQLDL 87 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT---TCCEEEC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc---CCCEEeC
Confidence 44555555554 233322 34555666666555544444455555555555555555543344443333 4455555
Q ss_pred CCCc-ccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccc
Q 004747 332 SHNR-FSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG 410 (732)
Q Consensus 332 s~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 410 (732)
++|. +++..|..+..+++|++|++++|.+++..|..+.++++|++|++++|. +.+
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------------------------l~~ 143 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA------------------------LQA 143 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC------------------------CCC
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc------------------------ccc
Confidence 5544 433334444444444444444444444444444444444444444444 444
Q ss_pred cCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhc
Q 004747 411 EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS 490 (732)
Q Consensus 411 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 490 (732)
..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|.++..+++|++|++++|++++..+..+..
T Consensus 144 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223 (285)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence 44444555666666666666666554445666666666666666666655666666666666666666666555555666
Q ss_pred CCCCCEEEccCCcCcc
Q 004747 491 FQAIQMMDFSTNKFMG 506 (732)
Q Consensus 491 ~~~L~~L~ls~N~l~~ 506 (732)
+++|+.|++++|++.+
T Consensus 224 l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVC 239 (285)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred CcccCEEeccCCCccC
Confidence 6666666666666653
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=5.1e-30 Score=292.43 Aligned_cols=464 Identities=13% Similarity=0.078 Sum_probs=238.9
Q ss_pred CCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCc---cc------------ccccCCCCC
Q 004747 68 NCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGR---IS------------TCFGGLSGL 132 (732)
Q Consensus 68 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~------------~~~~~l~~L 132 (732)
-|++|.++... ..+.+++..+... .....+..+++|++|+++++..... .| .....+++|
T Consensus 33 vck~W~~~~~~----~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L 107 (594)
T 2p1m_B 33 VCKSWYEIERW----CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL 107 (594)
T ss_dssp SCHHHHHHHHH----HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhhh----hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence 46678877321 2234555543321 1123456778899999988753211 11 112356677
Q ss_pred CEEECCCCCCCCCCCcccc-CCCCCCEEeCCCCCCCCCc-CCchhhhcccCCcEEEeeCcccccccCcccC----CCCCC
Q 004747 133 KTLDLSYNKFVGVVPDAIM-KLRNLRELILKGNPELGGV-FPGWVGNFSMNLEKLDFSFNSFCGEIPESLY----YLKSL 206 (732)
Q Consensus 133 ~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~~~~~~-~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~----~l~~L 206 (732)
++|+|++|.+++..+..+. .+++|++|+|++|..++.. ++.....+ ++|++|++++|.+++..+..+. .+++|
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L 186 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC-RNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHC-TTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhC-CCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence 7777777776655555554 5667777777666322211 22222334 5666666666665543332222 34455
Q ss_pred CEEEeecccCCCccccccccccEEECCCCcCcc-ccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCC-
Q 004747 207 KHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSG-TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH- 284 (732)
Q Consensus 207 ~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~- 284 (732)
++|++++|. .. ++. .++.....+++|++|++++|...+.++..+..+++|++|+++.+.
T Consensus 187 ~~L~l~~~~-~~------------------~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 247 (594)
T 2p1m_B 187 VSLNISCLA-SE------------------VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA 247 (594)
T ss_dssp CEEECTTCC-SC------------------CCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC
T ss_pred cEEEecccC-Cc------------------CCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC
Confidence 555555543 00 111 112223345667777777663222356666667777777654442
Q ss_pred ------CCCcCccccccCcCCcEE-EccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCC-cccccCCCCCCEEecc
Q 004747 285 ------LNYEISPRLVFFEKLLLL-DLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI-PLKITELKSLQALFLS 356 (732)
Q Consensus 285 ------l~~~~~~~l~~l~~L~~L-~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls 356 (732)
+.+ ++..+.++++|+.+ .+..... +.++..+..++ +|+.|++++|.+++.. +..+..+++|++|+++
T Consensus 248 ~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~---~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~ 322 (594)
T 2p1m_B 248 EVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCS---RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322 (594)
T ss_dssp CCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHT---TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhC---CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc
Confidence 111 22345556666666 2322211 12333333333 5666666666654321 2223455666666666
Q ss_pred CccCCCc-cccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccc-cCCCCCcEEEcccCceee
Q 004747 357 NNLLIGE-IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNNQISG 434 (732)
Q Consensus 357 ~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~ 434 (732)
+| +.+. ++.....+++|++|+++++.-.| ....+.+++.....+ ..+++|+.|+++.|.+++
T Consensus 323 ~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~ 386 (594)
T 2p1m_B 323 DY-IEDAGLEVLASTCKDLRELRVFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN 386 (594)
T ss_dssp GG-GHHHHHHHHHHHCTTCCEEEEECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH
T ss_pred Cc-cCHHHHHHHHHhCCCCCEEEEecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH
Confidence 55 2211 22222335566666663321000 001122222211112 235666666666666655
Q ss_pred eccccCC-CCCCCCEEEcc--C----Ccccc-----cchhhhhcCCCCCEEEcccCCCccccchhhhc-CCCCCEEEccC
Q 004747 435 EIPLTLA-GLKSLEIVDFS--S----NNLSG-----SLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFST 501 (732)
Q Consensus 435 ~~p~~~~-~l~~L~~L~Ls--~----N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~~L~~L~ls~ 501 (732)
..+..+. .+++|+.|+++ + +.+++ .++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++
T Consensus 387 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~ 465 (594)
T 2p1m_B 387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAF 465 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccC
Confidence 4443333 46667777776 3 44442 1223355677777777766 555444444544 77778888877
Q ss_pred CcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCc-cc
Q 004747 502 NKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPK-GL 580 (732)
Q Consensus 502 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~l 580 (732)
|.+++..+..+ ...+++|+.|++++|.+++..+. .+
T Consensus 466 ~~i~~~~~~~l-------------------------------------------~~~~~~L~~L~L~~n~~~~~~~~~~~ 502 (594)
T 2p1m_B 466 AGDSDLGMHHV-------------------------------------------LSGCDSLRKLEIRDCPFGDKALLANA 502 (594)
T ss_dssp CCSSHHHHHHH-------------------------------------------HHHCTTCCEEEEESCSCCHHHHHHTG
T ss_pred CCCcHHHHHHH-------------------------------------------HhcCCCcCEEECcCCCCcHHHHHHHH
Confidence 77653222111 12366777888888887654443 33
Q ss_pred ccccCCceeecccccceecCCc-c-cCccCCcEEeCCCCcCcc
Q 004747 581 FQLQGLEYLNLSFNFLDGQVPG-L-YRLRSLRALDLSHNSLTG 621 (732)
Q Consensus 581 ~~l~~L~~L~Ls~N~l~~~ip~-l-~~l~~L~~LdLs~N~l~~ 621 (732)
..+++|++|++++|+++..... + ..++.|+...+..+.-..
T Consensus 503 ~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~ 545 (594)
T 2p1m_B 503 SKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD 545 (594)
T ss_dssp GGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG
T ss_pred HhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc
Confidence 4578888888888888543222 3 456777777777665443
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.4e-26 Score=252.40 Aligned_cols=225 Identities=23% Similarity=0.189 Sum_probs=173.4
Q ss_pred CCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEE
Q 004747 106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKL 185 (732)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L 185 (732)
+++++|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++| .+.+..+..+..+ ++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYL-SKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSC-TTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhccc-CCCCEE
Confidence 57788888888888777777888888888888888888777777888888888888888 4555555556666 788888
Q ss_pred EeeCcccccccCcccCCCCCCCEEEeecccCCCcc-cc---ccccccEEECCCCcCccccCchhhcccccCeeeCCCCcc
Q 004747 186 DFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV-HD---FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261 (732)
Q Consensus 186 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~---~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l 261 (732)
++++|.+++..+..|.++++|++|++++|+..+.+ +. .+.+|++|++++|.+++. | .+..+++|++|++++|.+
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCC
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcC
Confidence 88888887666667788888888888874433333 22 234588888888888753 3 467788888889988888
Q ss_pred ccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCccc
Q 004747 262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS 337 (732)
Q Consensus 262 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~ 337 (732)
++..|..|.++++|++|++++|++++..+..+..+++|+.|+|++|++++..+..+..+. +|+.|++++|.+.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR---YLVELHLHHNPWN 303 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT---TCCEEECCSSCEE
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc---CCCEEEccCCCcC
Confidence 888888888888899999998888888788888888899999999888865555555555 7888999988876
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4.4e-28 Score=253.07 Aligned_cols=254 Identities=21% Similarity=0.163 Sum_probs=143.5
Q ss_pred EECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCc
Q 004747 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN 190 (732)
Q Consensus 111 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n 190 (732)
.+++.+.+.......+..+++|++|+|++|.+++..|..|.++++|++|+|++| .+.+..+ +..+ ++|++|++++|
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l-~~L~~L~Ls~n 90 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESL-STLRTLDLNNN 90 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE--ETTC-TTCCEEECCSS
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh--hhhc-CCCCEEECcCC
Confidence 344444443333333444555666666666655555555555556666666555 2222222 4444 56666666666
Q ss_pred ccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhh
Q 004747 191 SFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIA 270 (732)
Q Consensus 191 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 270 (732)
.+++.. ..++|++|++++|.+++..+..+.+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.
T Consensus 91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 91 YVQELL-----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp EEEEEE-----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred cccccc-----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 665322 236788888888877776666666777777777777766666677777777777777777766555553
Q ss_pred -ccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCC
Q 004747 271 -SLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS 349 (732)
Q Consensus 271 -~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 349 (732)
.+++|++|++++|.+++. +....+++|++|++++|.+++ +|..+..+++
T Consensus 166 ~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~----------------------------l~~~~~~l~~ 215 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF----------------------------MGPEFQSAAG 215 (317)
T ss_dssp GGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE----------------------------ECGGGGGGTT
T ss_pred hccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc----------------------------chhhhcccCc
Confidence 567777777777766543 122235555555555555542 2223444444
Q ss_pred CCEEeccCccCCCccccccCCCCCCCEEEccCCcCc-cccCccccCCcCcceeecc
Q 004747 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS-GSIPLNIVGCFQLLALIVN 404 (732)
Q Consensus 350 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~~~~L~~L~l~ 404 (732)
|++|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.+++.
T Consensus 216 L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred ccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 555555555444 33444445555555555555554 4444445555555555555
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.7e-26 Score=258.47 Aligned_cols=287 Identities=24% Similarity=0.280 Sum_probs=188.3
Q ss_pred CCCC-CCCCCCCccceee------cCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCC
Q 004747 61 LSSW-VGSNCTNWTGVAC------NFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLK 133 (732)
Q Consensus 61 l~~w-~~~~~c~w~gv~c------~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 133 (732)
.++| .+.+||.|.|..| ......++.|++++++++ .+|..+. ++|++|++++|.++ .+|. .+++|+
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~ 84 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELR 84 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCC
T ss_pred HHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCC
Confidence 3457 5678999976422 112235888999999987 6676665 78999999999988 4555 578899
Q ss_pred EEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeec
Q 004747 134 TLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEK 213 (732)
Q Consensus 134 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 213 (732)
+|+|++|.+++ +|. .+++|++|++++|+ +.+ +|. .+ ++|++|++++|.+++ +|.. +++|++|++++
T Consensus 85 ~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~-l~~-l~~---~l-~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 85 TLEVSGNQLTS-LPV---LPPGLLELSIFSNP-LTH-LPA---LP-SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSD 150 (622)
T ss_dssp EEEECSCCCSC-CCC---CCTTCCEEEECSCC-CCC-CCC---CC-TTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred EEEcCCCcCCc-CCC---CCCCCCEEECcCCc-CCC-CCC---CC-CCcCEEECCCCCCCc-CCCC---CCCCCEEECcC
Confidence 99999999884 454 67888999998884 333 343 22 688888888888874 5543 47888888888
Q ss_pred ccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCcccc
Q 004747 214 NNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRL 293 (732)
Q Consensus 214 n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 293 (732)
|.+++. +..+.+|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++. +|.
T Consensus 151 N~l~~l-~~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~-- 218 (622)
T 3g06_A 151 NQLASL-PALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA-- 218 (622)
T ss_dssp SCCSCC-CCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC--
T ss_pred CcCCCc-CCccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC--
Confidence 888753 3445667777777777764 34 345667777777777664 332 23566777777776663 332
Q ss_pred ccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCC
Q 004747 294 VFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTY 373 (732)
Q Consensus 294 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 373 (732)
.+++|+.|++++|.+++ +|. . .++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+.++++
T Consensus 219 -~~~~L~~L~Ls~N~L~~-lp~---~---l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~ 285 (622)
T 3g06_A 219 -LPSGLKELIVSGNRLTS-LPV---L---PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSS 285 (622)
T ss_dssp -CCTTCCEEECCSSCCSC-CCC---C---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCT
T ss_pred -CCCCCCEEEccCCccCc-CCC---C---CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccc
Confidence 23566666666666663 331 1 125666666666666 3443 3456666666666666 55556666666
Q ss_pred CCEEEccCCcCccccCcccc
Q 004747 374 LQVIDLSHNMLSGSIPLNIV 393 (732)
Q Consensus 374 L~~L~Ls~n~l~~~~p~~~~ 393 (732)
|+.|++++|.+++..|..+.
T Consensus 286 L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 286 ETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TCEEECCSCCCCHHHHHHHH
T ss_pred cCEEEecCCCCCCcCHHHHH
Confidence 66666666666655554443
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=7.8e-29 Score=282.65 Aligned_cols=253 Identities=12% Similarity=0.076 Sum_probs=123.1
Q ss_pred cccCCCCCCEE-eccCccCCCccccccCCCCCCCEEEccCCcCccccCc-cccCCcCcceeeccccccccc-CcccccCC
Q 004747 343 KITELKSLQAL-FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL-NIVGCFQLLALIVNNNNLSGE-IQPELDAL 419 (732)
Q Consensus 343 ~l~~l~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l 419 (732)
.+.++++|+.| .+.+... +.++..+..+++|+.|++++|.+++.... .+..+++|+.|++.+| +... ++.....+
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC 337 (594)
T ss_dssp HHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred HHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence 44555555555 2322211 23333333455566666655554432211 1234455555555554 2211 11122345
Q ss_pred CCCcEEEccc---------CceeeeccccC-CCCCCCCEEEccCCcccccchhhhh-cCCCCCEEEcc--c----CCCcc
Q 004747 420 DSLKILDISN---------NQISGEIPLTL-AGLKSLEIVDFSSNNLSGSLNDAIT-KWTNLKYFSIA--R----NKLSG 482 (732)
Q Consensus 420 ~~L~~L~L~~---------n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~--~----N~l~~ 482 (732)
++|++|++++ +.+++.....+ .++++|++|+++.|.+++.....+. .+++|+.|+++ + +.+++
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 6666666632 33433222222 2356677776666666655444443 46677777776 2 33431
Q ss_pred -----ccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhh
Q 004747 483 -----NLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNY 557 (732)
Q Consensus 483 -----~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (732)
.++..+..+++|+.|++++ .+++..+..+ ..
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l-------------------------------------------~~ 453 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI-------------------------------------------GT 453 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH-------------------------------------------HH
T ss_pred CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH-------------------------------------------HH
Confidence 1222345566666666654 3332111110 01
Q ss_pred hcccceEEEccCCcccccCCccc-ccccCCceeecccccceecCCc--ccCccCCcEEeCCCCcCcccCCcCC-CCCCCC
Q 004747 558 QLFSAVGMDLSDNLLHGTIPKGL-FQLQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGNI-SSLQEL 633 (732)
Q Consensus 558 ~l~~L~~LdLs~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~~~ip~--l~~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L 633 (732)
.+++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++.... +..+++|++|++++|.++......+ ..++.|
T Consensus 454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l 533 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533 (594)
T ss_dssp HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTE
T ss_pred hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCC
Confidence 14556667777776665544444 4466677777777766543332 3346667777777776654333333 334555
Q ss_pred CEEEcccC
Q 004747 634 TLLNLSYN 641 (732)
Q Consensus 634 ~~L~ls~N 641 (732)
+...+..+
T Consensus 534 ~i~~~~~~ 541 (594)
T 2p1m_B 534 NVEVIDER 541 (594)
T ss_dssp EEEEECSS
T ss_pred EEEEecCC
Confidence 55444443
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.4e-25 Score=243.59 Aligned_cols=247 Identities=23% Similarity=0.184 Sum_probs=147.9
Q ss_pred CCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCC
Q 004747 206 LKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL 285 (732)
Q Consensus 206 L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 285 (732)
.+.++.+++.++..+.....+++.|+|++|++++..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 34555555555544433344466666666666666666677777777777777777766666777777777777777777
Q ss_pred CCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCc-ccccCCCCCCEEeccCccCCCcc
Q 004747 286 NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP-LKITELKSLQALFLSNNLLIGEI 364 (732)
Q Consensus 286 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~ 364 (732)
+...+..+..+++|++|++++|.++...+..+..++ +|++|++++|+..+.++ ..+..+++|++|++++|.++ .+
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~---~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP---SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT---TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc---ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 755555666667777777776666643333444433 56666666533222222 24555555555555555555 23
Q ss_pred ccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCC
Q 004747 365 PARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLK 444 (732)
Q Consensus 365 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 444 (732)
| .+..+++|++|++++|.++ +..+..+..+++|+.|++++|++++..+..|.+++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLS------------------------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCC------------------------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred c-ccCCCcccCEEECCCCccC------------------------ccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 3 2444555555555555554 44444555566666666666666666666666666
Q ss_pred CCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCc
Q 004747 445 SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481 (732)
Q Consensus 445 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 481 (732)
+|++|+|++|++++..+..+..+++|+.|+|++|++.
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 6666666666666555555666666666666666664
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=5.9e-27 Score=258.74 Aligned_cols=234 Identities=20% Similarity=0.164 Sum_probs=134.9
Q ss_pred CCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcc
Q 004747 349 SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428 (732)
Q Consensus 349 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 428 (732)
+|++|+|++|.+++..|..|..+++|++|++++|.+++..| +..+++|+.|++++|.+++.. ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 34444444444444333444444444444444444433222 333333333333333333221 12567777777
Q ss_pred cCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhh-cCCCCCEEEccCCcCccc
Q 004747 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF-SFQAIQMMDFSTNKFMGF 507 (732)
Q Consensus 429 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~~~~L~~L~ls~N~l~~~ 507 (732)
+|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 7777655443 346677777777777766666677777777777777777766666664 567777777777776643
Q ss_pred CCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCc
Q 004747 508 IPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLE 587 (732)
Q Consensus 508 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 587 (732)
.+.. .+++|+.|||++|.+++ +|..+..+++|+
T Consensus 185 ~~~~----------------------------------------------~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~ 217 (487)
T 3oja_A 185 KGQV----------------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVT 217 (487)
T ss_dssp ECCC----------------------------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCS
T ss_pred cccc----------------------------------------------cCCCCCEEECCCCCCCC-CCHhHcCCCCcc
Confidence 2111 14566677777777764 444466677777
Q ss_pred eeecccccceecCCcccCccCCcEEeCCCCcCc-ccCCcCCCCCCCCCEEEcc
Q 004747 588 YLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT-GQIPGNISSLQELTLLNLS 639 (732)
Q Consensus 588 ~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls 639 (732)
.|+|++|.+++..+.+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 218 ~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 777777777653333666677777777777766 5556666666666666665
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.6e-24 Score=244.09 Aligned_cols=266 Identities=24% Similarity=0.265 Sum_probs=140.1
Q ss_pred CCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCc
Q 004747 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS 260 (732)
Q Consensus 181 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 260 (732)
++++|++++|.++ .+|..+. ++|++|++++|.++.... .+.+|++|+|++|++++ +|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCc
Confidence 3455555555554 3444333 455555555555543222 33445555555555442 332 34555555555555
Q ss_pred cccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCC
Q 004747 261 VVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI 340 (732)
Q Consensus 261 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~ 340 (732)
+++ +|. .+++|++|++++|+++. +|.. +++|++|++++|.+++ +|.. ..+|+.|++++|.+++ +
T Consensus 113 l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~------~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 113 LTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL------PSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp CCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCC------CTTCCEEECCSSCCSC-C
T ss_pred CCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCc------cCCCCEEECCCCCCCC-C
Confidence 553 222 34556666666665553 3322 3556666666666553 2221 1256666666666653 4
Q ss_pred cccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCC
Q 004747 341 PLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALD 420 (732)
Q Consensus 341 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 420 (732)
| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|.. +++|+.|++++|.+++. | ..++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~l-p---~~l~ 241 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSL-P---VLPS 241 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-C---CCCT
T ss_pred c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCcC-C---CCCC
Confidence 4 334556666666666653 3321 355666666666655 23321 24555566666655542 2 3345
Q ss_pred CCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhc
Q 004747 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS 490 (732)
Q Consensus 421 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 490 (732)
+|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..
T Consensus 242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 6666666666666 3443 4556666666666666 45556666666666666666666666555443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.3e-26 Score=251.81 Aligned_cols=233 Identities=22% Similarity=0.193 Sum_probs=141.2
Q ss_pred CCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEE
Q 004747 131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLD 210 (732)
Q Consensus 131 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 210 (732)
+|++|+|++|.+++..|..|+.+++|++|+|++| .+.+..| +..+ ++|++|++++|.+++..+ .++|++|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l-~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESL-STLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTC-TTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccC-CCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 4555555555555444445555555555555555 2222222 3444 566666666666654322 27788888
Q ss_pred eecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhh-ccCCCCEEEeccCCCCCcC
Q 004747 211 LEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIA-SLQALTHLNLSHNHLNYEI 289 (732)
Q Consensus 211 Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~ 289 (732)
+++|.+++..+..+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++.
T Consensus 106 L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp CCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 888888877777777778888888888777777777788888888888888877777665 677888888888877654
Q ss_pred ccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCC-Ccccccc
Q 004747 290 SPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLI-GEIPARI 368 (732)
Q Consensus 290 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l 368 (732)
+....+++|+.|++++|.+++. |..+..++ +|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+
T Consensus 185 -~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~---~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 185 -KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAA---GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp -ECCCCCTTCCEEECCSSCCCEE-CGGGGGGT---TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred -cccccCCCCCEEECCCCCCCCC-CHhHcCCC---CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 2233466666666666666643 22344443 56666666666552 4545555555555555555554 3444444
Q ss_pred CCCCCCCEEEc
Q 004747 369 GNLTYLQVIDL 379 (732)
Q Consensus 369 ~~l~~L~~L~L 379 (732)
..++.|+.+++
T Consensus 259 ~~l~~L~~l~~ 269 (487)
T 3oja_A 259 SKNQRVQTVAK 269 (487)
T ss_dssp TTCHHHHHHHH
T ss_pred HhCCCCcEEec
Confidence 44444444444
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.8e-24 Score=220.16 Aligned_cols=219 Identities=24% Similarity=0.241 Sum_probs=165.9
Q ss_pred CCCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCC
Q 004747 67 SNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV 146 (732)
Q Consensus 67 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 146 (732)
.++|.|.|+.|. ..+.++.++++++.++ .+|..+. +++++|++++|++++..+..|.++++|++|++++|.+++..
T Consensus 2 ~~~C~~~~~~C~-c~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCS-CNNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBE-EETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCE-eCCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 478999999986 3345678999999888 4565554 68999999999998777778999999999999999999777
Q ss_pred CccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccccccc
Q 004747 147 PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS 226 (732)
Q Consensus 147 p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 226 (732)
+..|.++++|++|++++| .+.+..+..+..+ ++|++|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus 78 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------ 149 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDN-KLQALPIGVFDQL-VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP------ 149 (270)
T ss_dssp TTTTSSCTTCCEEECCSS-CCCCCCTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------
T ss_pred hhhhcCCCCCCEEECCCC-cCCcCCHhHcccc-cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC------
Confidence 777788999999999998 4555555556666 78888888888888777777788888888888877766433
Q ss_pred ccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccC
Q 004747 227 LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF 306 (732)
Q Consensus 227 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 306 (732)
+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 150 ---------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 150 ---------------KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp ---------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ---------------HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 33455666777777777777665555667777777777777777755555566777777777777
Q ss_pred CCCCCC
Q 004747 307 NDLSGP 312 (732)
Q Consensus 307 n~l~~~ 312 (732)
|.+...
T Consensus 215 N~~~c~ 220 (270)
T 2o6q_A 215 NPWDCT 220 (270)
T ss_dssp SCBCCS
T ss_pred CCeeCC
Confidence 776543
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.8e-24 Score=219.68 Aligned_cols=208 Identities=20% Similarity=0.205 Sum_probs=138.7
Q ss_pred cceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEccc
Q 004747 398 LLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477 (732)
Q Consensus 398 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 477 (732)
+++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 33444444444433333455556666666666666655555566666666666666666655555566666666666666
Q ss_pred CCCccccchhhhcCCCCCEEEccCCcCccc-CCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhh
Q 004747 478 NKLSGNLPNWLFSFQAIQMMDFSTNKFMGF-IPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFN 556 (732)
Q Consensus 478 N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (732)
|++.+..+..+..+++|++|++++|.+++. +|..+
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~-------------------------------------------- 145 (276)
T 2z62_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-------------------------------------------- 145 (276)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--------------------------------------------
T ss_pred CCccccCchhcccCCCCCEEECcCCccceecCchhh--------------------------------------------
Confidence 666655454566666666666666666542 23321
Q ss_pred hhcccceEEEccCCcccccCCcccccccCCc----eeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCC
Q 004747 557 YQLFSAVGMDLSDNLLHGTIPKGLFQLQGLE----YLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQE 632 (732)
Q Consensus 557 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~ 632 (732)
..+++|+.|++++|++++..+..+..+.+|+ +|++++|.+++..+......+|+.|+|++|++++..+..|..+++
T Consensus 146 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS 225 (276)
T ss_dssp GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhccccc
Confidence 1256677777777777766666676666666 789999999877666666668999999999999877777899999
Q ss_pred CCEEEcccCcceeeCCC
Q 004747 633 LTLLNLSYNSFSGFVPW 649 (732)
Q Consensus 633 L~~L~ls~N~l~g~ip~ 649 (732)
|++|++++|++.+..|.
T Consensus 226 L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 226 LQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCEEECCSSCBCCCTTT
T ss_pred ccEEEccCCcccccCCc
Confidence 99999999999987764
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=3.1e-23 Score=211.92 Aligned_cols=226 Identities=26% Similarity=0.225 Sum_probs=135.9
Q ss_pred EeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccc
Q 004747 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL 408 (732)
Q Consensus 329 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 408 (732)
.+..+..++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+.
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------ 70 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG------------------ 70 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT------------------
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH------------------
Confidence 444444444 3444332 3566666666666654444556666666666666655543333
Q ss_pred cccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccc-cchh
Q 004747 409 SGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN-LPNW 487 (732)
Q Consensus 409 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~ 487 (732)
.+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|++.+. +|..
T Consensus 71 ------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 71 ------AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp ------TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred ------HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence 344455555555555555555555555666666666666666554444555666666666666666542 4666
Q ss_pred hhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccce-EEE
Q 004747 488 LFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAV-GMD 566 (732)
Q Consensus 488 ~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~Ld 566 (732)
+..+++|++|++++|++++..+..+ .. ...++.+. .|+
T Consensus 145 ~~~l~~L~~L~Ls~N~l~~~~~~~~-~~----------------------------------------l~~L~~l~l~L~ 183 (276)
T 2z62_A 145 FSNLTNLEHLDLSSNKIQSIYCTDL-RV----------------------------------------LHQMPLLNLSLD 183 (276)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGG-HH----------------------------------------HHTCTTCCEEEE
T ss_pred hccCCCCCEEECCCCCCCcCCHHHh-hh----------------------------------------hhhccccceeee
Confidence 6666666666666666654332221 11 01122232 688
Q ss_pred ccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccC
Q 004747 567 LSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQI 623 (732)
Q Consensus 567 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~i 623 (732)
+++|++++ +|.......+|++|++++|++++..+. +.++++|+.|+|++|.+++..
T Consensus 184 ls~n~l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 184 LSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCSSCCCE-ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cCCCcccc-cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 88888884 444444555899999999999866666 678999999999999998654
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.5e-23 Score=211.96 Aligned_cols=224 Identities=21% Similarity=0.210 Sum_probs=133.3
Q ss_pred ccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEE
Q 004747 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLL 329 (732)
Q Consensus 250 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L 329 (732)
++..+++..+.+.+.. ....+++|++|++++|.++.. +.+..+++|++|++++|.+++ ++ .+..++ +|++|
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~---~L~~L 90 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS-ALKELT---NLTYL 90 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG-GGTTCT---TCCEE
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch-hhcCCC---CCCEE
Confidence 4455666666665432 355677788888887777632 346677777777777777764 22 333333 67777
Q ss_pred eCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccccccc
Q 004747 330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409 (732)
Q Consensus 330 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 409 (732)
++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 77777777655556677777777777777777666666677777777777777776554444455555555555555555
Q ss_pred ccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhh
Q 004747 410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF 489 (732)
Q Consensus 410 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 489 (732)
+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+. +++|+.+++..|.++|.+|.+++
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence 44444445555555555555555544444455555555555555554432 23444455555555555554443
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.7e-23 Score=213.13 Aligned_cols=159 Identities=22% Similarity=0.205 Sum_probs=73.3
Q ss_pred cCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcE
Q 004747 345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI 424 (732)
Q Consensus 345 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 424 (732)
..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 60 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 3334444444444444321 13344444444444444444333333333333333333333333333333444555555
Q ss_pred EEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcC
Q 004747 425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504 (732)
Q Consensus 425 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l 504 (732)
|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 55555555544444445555555555555555544444445555555555555555544444445555555555555544
Q ss_pred c
Q 004747 505 M 505 (732)
Q Consensus 505 ~ 505 (732)
.
T Consensus 218 ~ 218 (272)
T 3rfs_A 218 D 218 (272)
T ss_dssp C
T ss_pred c
Confidence 3
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.7e-24 Score=227.70 Aligned_cols=181 Identities=21% Similarity=0.232 Sum_probs=88.4
Q ss_pred EEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCc----ccccCCC-CCCEEeccCccCCCccccccCCC-----
Q 004747 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP----LKITELK-SLQALFLSNNLLIGEIPARIGNL----- 371 (732)
Q Consensus 302 L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l----- 371 (732)
+++++|.++|.+|..+.... +|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~---~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPH---GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCT---TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred cccccccchHHHHHHHhCCC---CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 45566666655554433332 46666666666654433 4444555 56666666665555444444332
Q ss_pred CCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCC-CCCcEEEcccCceeeecccc----CCC-CCC
Q 004747 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL-DSLKILDISNNQISGEIPLT----LAG-LKS 445 (732)
Q Consensus 372 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~----~~~-l~~ 445 (732)
++|++|++++|.+++..+..+.. .+..+ ++|++|++++|.+++..+.. +.. .++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~--------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 139 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVK--------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHH--------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTT
T ss_pred CCccEEECcCCcCChHHHHHHHH--------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCc
Confidence 55555555555555433332221 12222 45555555555555433322 222 245
Q ss_pred CCEEEccCCcccccc----hhhhhcCC-CCCEEEcccCCCccccchhhh----cC-CCCCEEEccCCcCc
Q 004747 446 LEIVDFSSNNLSGSL----NDAITKWT-NLKYFSIARNKLSGNLPNWLF----SF-QAIQMMDFSTNKFM 505 (732)
Q Consensus 446 L~~L~Ls~N~l~~~~----~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~----~~-~~L~~L~ls~N~l~ 505 (732)
|++|++++|.+++.. +..+..++ +|++|++++|++++..+..+. .+ ++|++||+++|.++
T Consensus 140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 666666666555322 22333333 566666666655544443222 23 35666666666554
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=4.8e-22 Score=202.19 Aligned_cols=204 Identities=23% Similarity=0.230 Sum_probs=147.1
Q ss_pred CcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEE
Q 004747 299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVID 378 (732)
Q Consensus 299 L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 378 (732)
.+.++++++.++ .+|..+. ++++.|++++|++++..+..+..+++|++|++++|.+++..+..|.++++|++|+
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~-----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP-----ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC-----TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCEEEccCCCCC-ccCCCCC-----CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 455566666555 3443332 1566777777777655555667777777777777777654445556677777777
Q ss_pred ccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccc
Q 004747 379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458 (732)
Q Consensus 379 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 458 (732)
+++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 77777776555566677777777777777777777777788888888888888886666667888888888888888887
Q ss_pred cchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccC
Q 004747 459 SLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFI 508 (732)
Q Consensus 459 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~ 508 (732)
..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++....
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 76777788888888888888888666666778888888888888876543
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=4.3e-24 Score=225.04 Aligned_cols=270 Identities=19% Similarity=0.197 Sum_probs=168.2
Q ss_pred CCCCCccceeecCCCCcEEEEEcCCCCCcccccccccCC--CCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCC
Q 004747 67 SNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKL--SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVG 144 (732)
Q Consensus 67 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 144 (732)
..|..|.++.|+ ...++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++
T Consensus 34 ~vc~~W~~~~~~--~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 34 GVCKRWYRLASD--ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp SSCHHHHHHHTC--STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred HHHHHHHHHhcC--chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence 456789988875 345677888887765 3345555 7788888888888766555 4567888888888887765
Q ss_pred C-CCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCc-ccccc-cCcccCCCCCCCEEEeecc-cCCCcc
Q 004747 145 V-VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN-SFCGE-IPESLYYLKSLKHLDLEKN-NLTGNV 220 (732)
Q Consensus 145 ~-~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~Ls~n-~l~~~~ 220 (732)
. +|..+..+++|++|++++| .+++..+..++.+ ++|++|++++| .+++. ++..+.++++|++|++++| .+++.
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~- 184 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK- 184 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-
T ss_pred HHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcC-CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-
Confidence 4 6666777777777777777 3455555556555 66777777666 45542 4444556666666666666 55431
Q ss_pred ccccccccEEECCCCcCccccCchhhccc-ccCeeeCCCC--ccc-cccchhhhccCCCCEEEeccCC-CCCcCcccccc
Q 004747 221 HDFYQSLLVLNLGSNRFSGTLPCFAASAM-SLTVLKLDNN--SVV-GGIPTCIASLQALTHLNLSHNH-LNYEISPRLVF 295 (732)
Q Consensus 221 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~ 295 (732)
.++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..
T Consensus 185 -------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 185 -------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp -------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred -------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence 1344555666 6777777766 333 3445556667777777777776 55555666667
Q ss_pred CcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCC-CCCCEEeccCccCCCccccccCC
Q 004747 296 FEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITEL-KSLQALFLSNNLLIGEIPARIGN 370 (732)
Q Consensus 296 l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~ 370 (732)
+++|++|++++|. +..+..+..+..+++|+.|++++| ++.. .+..+ ..++.|++++|++++..|..++.
T Consensus 246 l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 246 LNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 7777777777774 223332222333346777777776 3322 12222 23556667777777776665543
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.6e-23 Score=217.73 Aligned_cols=223 Identities=23% Similarity=0.250 Sum_probs=125.8
Q ss_pred CCCEEeccCccCCCcccc---ccCCCCCCCEEEccCCcCccccCccc--cCCcCcceeecccccccccCc----ccccCC
Q 004747 349 SLQALFLSNNLLIGEIPA---RIGNLTYLQVIDLSHNMLSGSIPLNI--VGCFQLLALIVNNNNLSGEIQ----PELDAL 419 (732)
Q Consensus 349 ~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~l 419 (732)
.++.+.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466777777665432110 11223557777777777777777666 666667777777776665433 223345
Q ss_pred CCCcEEEcccCceeeeccccCCCCCCCCEEEccCCccccc--ch--hhhhcCCCCCEEEcccCCCccccch----hhhcC
Q 004747 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS--LN--DAITKWTNLKYFSIARNKLSGNLPN----WLFSF 491 (732)
Q Consensus 420 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~~--~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~~ 491 (732)
++|++|++++|.+.+..+..+..+++|++|++++|++.+. ++ ..+..+++|++|++++|+++. ++. .+..
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~- 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA- 222 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH-
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc-
Confidence 5666666666666555555555666666666666655432 11 112344555555555555431 111 1223
Q ss_pred CCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCc
Q 004747 492 QAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNL 571 (732)
Q Consensus 492 ~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 571 (732)
+++|++|||++|+
T Consensus 223 -------------------------------------------------------------------l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 223 -------------------------------------------------------------------GVQPHSLDLSHNS 235 (310)
T ss_dssp -------------------------------------------------------------------TCCCSSEECTTSC
T ss_pred -------------------------------------------------------------------CCCCCEEECCCCC
Confidence 4455555666666
Q ss_pred ccccCCcccccc---cCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCccee
Q 004747 572 LHGTIPKGLFQL---QGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG 645 (732)
Q Consensus 572 l~g~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 645 (732)
+++.+|..++.+ ++|++|+|++|+++ .+|. +. ++|++|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 236 l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 236 LRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 655555555554 46666777777666 4454 43 5777777777777753 32 4566777777777777653
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.2e-23 Score=220.44 Aligned_cols=160 Identities=24% Similarity=0.225 Sum_probs=91.3
Q ss_pred EECCCCcCccccCchhhcccccCeeeCCCCccccccc----hhhhccC-CCCEEEeccCCCCCcCccccccC-----cCC
Q 004747 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP----TCIASLQ-ALTHLNLSHNHLNYEISPRLVFF-----EKL 299 (732)
Q Consensus 230 L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~L 299 (732)
++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4555666666666665555567777777777665554 4555666 67777777776665555555543 666
Q ss_pred cEEEccCCCCCCCCchhhhhc-CCC-CCccEEeCCCCcccCCCcccc----cC-CCCCCEEeccCccCCCcc----cccc
Q 004747 300 LLLDLSFNDLSGPLPSKIAQT-TEK-AGLVLLDLSHNRFSGEIPLKI----TE-LKSLQALFLSNNLLIGEI----PARI 368 (732)
Q Consensus 300 ~~L~Ls~n~l~~~~p~~~~~l-~~~-~~L~~L~Ls~n~l~~~~p~~l----~~-l~~L~~L~Ls~n~l~~~~----p~~l 368 (732)
++|++++|.+++..+..+... ... ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 667776666665555544432 111 256666666666664443332 22 246666666666665422 2233
Q ss_pred CCCC-CCCEEEccCCcCccccC
Q 004747 369 GNLT-YLQVIDLSHNMLSGSIP 389 (732)
Q Consensus 369 ~~l~-~L~~L~Ls~n~l~~~~p 389 (732)
..++ +|++|++++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~ 184 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNC 184 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCH
T ss_pred hcCCccccEeeecCCCCchhhH
Confidence 3443 66666666666654443
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=7.4e-22 Score=202.63 Aligned_cols=204 Identities=24% Similarity=0.250 Sum_probs=149.8
Q ss_pred cccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCC
Q 004747 293 LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT 372 (732)
Q Consensus 293 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 372 (732)
+..+++++.++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+++. +. ...++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~-----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP-----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC-----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC-----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCC
Confidence 344555566666666555 3443332 1566677777777655566667777777777777777643 22 25677
Q ss_pred CCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEcc
Q 004747 373 YLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFS 452 (732)
Q Consensus 373 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 452 (732)
+|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|+++
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 7777777777776 566666777777777777777777766778888888899999988887766777888899999999
Q ss_pred CCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcc
Q 004747 453 SNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506 (732)
Q Consensus 453 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~ 506 (732)
+|++++..+..+..+++|++|++++|+++ .+|..+....+|+.+++++|++..
T Consensus 157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 99988766667788889999999999988 778888888899999999998853
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.6e-23 Score=225.03 Aligned_cols=185 Identities=21% Similarity=0.258 Sum_probs=115.3
Q ss_pred CccEEeCCCCcccC----CCcccccCCCCCCEEeccCccCCCccccc----cCCC---------CCCCEEEccCCcCc-c
Q 004747 325 GLVLLDLSHNRFSG----EIPLKITELKSLQALFLSNNLLIGEIPAR----IGNL---------TYLQVIDLSHNMLS-G 386 (732)
Q Consensus 325 ~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~----l~~l---------~~L~~L~Ls~n~l~-~ 386 (732)
+|++|++++|.+++ .+|..+..+++|++|+|++|.+++..+.. +..+ ++|++|++++|.++ +
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 45555555555554 24444455555555555555554322222 2222 56666666666655 2
Q ss_pred ccC---ccccCCcCcceeecccccccc-----cCcccccCCCCCcEEEcccCcee----eeccccCCCCCCCCEEEccCC
Q 004747 387 SIP---LNIVGCFQLLALIVNNNNLSG-----EIQPELDALDSLKILDISNNQIS----GEIPLTLAGLKSLEIVDFSSN 454 (732)
Q Consensus 387 ~~p---~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~N 454 (732)
.++ ..+..+++|+.|++++|.+.. ..+..+..+++|+.|+|++|.++ +.+|..+..+++|++|++++|
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 233 244455566666666666552 23335667778888888888875 456677777888888888888
Q ss_pred ccccc----chhhhhc--CCCCCEEEcccCCCcc----ccchhh-hcCCCCCEEEccCCcCcccCC
Q 004747 455 NLSGS----LNDAITK--WTNLKYFSIARNKLSG----NLPNWL-FSFQAIQMMDFSTNKFMGFIP 509 (732)
Q Consensus 455 ~l~~~----~~~~~~~--l~~L~~L~L~~N~l~~----~~p~~~-~~~~~L~~L~ls~N~l~~~~p 509 (732)
.+++. ++..+.. +++|++|+|++|.+++ .+|..+ ..+++|++|++++|++++..+
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 88765 4555533 7888888888888876 467766 557888888888888876543
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=4.3e-23 Score=217.35 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=35.4
Q ss_pred CcEEEccCCCCCCCCchhhhhc--CCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCc-cccccCCCCCCC
Q 004747 299 LLLLDLSFNDLSGPLPSKIAQT--TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGE-IPARIGNLTYLQ 375 (732)
Q Consensus 299 L~~L~Ls~n~l~~~~p~~~~~l--~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~ 375 (732)
++.++++++.+. +..+..+ . +++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~---~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQ---GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHT---TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred heeeccccccCC---HHHHHhhhhc---cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 455555555544 2233332 2 455555555555433332 23344444444444444432 333444444444
Q ss_pred EEEccCCcCc
Q 004747 376 VIDLSHNMLS 385 (732)
Q Consensus 376 ~L~Ls~n~l~ 385 (732)
+|++++|.++
T Consensus 122 ~L~L~~~~l~ 131 (336)
T 2ast_B 122 NLSLEGLRLS 131 (336)
T ss_dssp EEECTTCBCC
T ss_pred EEeCcCcccC
Confidence 4444444443
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=9.2e-22 Score=197.80 Aligned_cols=142 Identities=27% Similarity=0.324 Sum_probs=99.4
Q ss_pred CCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCC
Q 004747 68 NCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVP 147 (732)
Q Consensus 68 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 147 (732)
+||.|.|..|.. ..+.++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|+|++|.+++..|
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 689999999952 2346788888887 4555554 588899999999888888788888899999999998888877
Q ss_pred ccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCC
Q 004747 148 DAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT 217 (732)
Q Consensus 148 ~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 217 (732)
..|..+++|++|+|++| .+++..+..+..+ ++|++|++++|.+++..+..+..+++|++|+|++|.++
T Consensus 77 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 77 GVFDDLTELGTLGLANN-QLASLPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp TTTTTCTTCCEEECTTS-CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred hHhccCCcCCEEECCCC-cccccChhHhccc-CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 77888888888888887 4444444445555 56666666666665444444455555555555555443
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=209.51 Aligned_cols=181 Identities=13% Similarity=0.135 Sum_probs=140.2
Q ss_pred CccEEeCCCCcccCCCcc---cccCCCCCCEEeccCccCCCcccccc--CCCCCCCEEEccCCcCccccC----ccccCC
Q 004747 325 GLVLLDLSHNRFSGEIPL---KITELKSLQALFLSNNLLIGEIPARI--GNLTYLQVIDLSHNMLSGSIP----LNIVGC 395 (732)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p----~~~~~~ 395 (732)
.++.+.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 578888888877532111 12234679999999999999999888 899999999999999997655 344578
Q ss_pred cCcceeecccccccccCcccccCCCCCcEEEcccCceeee--c--cccCCCCCCCCEEEccCCcccccc--hh-hhhcCC
Q 004747 396 FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE--I--PLTLAGLKSLEIVDFSSNNLSGSL--ND-AITKWT 468 (732)
Q Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~--~~-~~~~l~ 468 (732)
++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|+++... +. .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999998753 2 233478999999999999997322 22 357889
Q ss_pred CCCEEEcccCCCccccchhhhcC---CCCCEEEccCCcCc
Q 004747 469 NLKYFSIARNKLSGNLPNWLFSF---QAIQMMDFSTNKFM 505 (732)
Q Consensus 469 ~L~~L~L~~N~l~~~~p~~~~~~---~~L~~L~ls~N~l~ 505 (732)
+|++|++++|++.+..|..+..+ ++|++|++++|+++
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 99999999999987767655444 34444444444443
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=2.9e-21 Score=198.15 Aligned_cols=180 Identities=26% Similarity=0.213 Sum_probs=107.3
Q ss_pred cCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEE
Q 004747 200 LYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279 (732)
Q Consensus 200 l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 279 (732)
+.+++++++++++++.++...+.....+++|++++|.+++..+..+..+++|++|++++|.+++..+ .+.+++|++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE
Confidence 5566777777777777765554444556666666666666666666677777777777777664332 25566666666
Q ss_pred eccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCcc
Q 004747 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359 (732)
Q Consensus 280 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 359 (732)
+++|+++ .+|..+..+++|++|++++|++++..+..+..+. +|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~---~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG---ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT---TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC---CCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 6666665 4455555666666666666666544444444444 55566666665554444445555555566665555
Q ss_pred CCCccccccCCCCCCCEEEccCCcCc
Q 004747 360 LIGEIPARIGNLTYLQVIDLSHNMLS 385 (732)
Q Consensus 360 l~~~~p~~l~~l~~L~~L~Ls~n~l~ 385 (732)
+++..+..+..+++|++|++++|.++
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC
Confidence 55443344455555555555555554
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=6e-23 Score=220.55 Aligned_cols=258 Identities=20% Similarity=0.242 Sum_probs=173.3
Q ss_pred cCchhhcccccCeeeCCCCccccccchh----hhccCCCCEEEeccCC---CCCcCcccc-------ccCcCCcEEEccC
Q 004747 241 LPCFAASAMSLTVLKLDNNSVVGGIPTC----IASLQALTHLNLSHNH---LNYEISPRL-------VFFEKLLLLDLSF 306 (732)
Q Consensus 241 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~L~~n~---l~~~~~~~l-------~~l~~L~~L~Ls~ 306 (732)
++..+..+++|++|++++|.+.+..+.. +..+++|++|++++|. +++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 4455566666777777777666543333 4456677777776643 333444443 5667777777777
Q ss_pred CCCCC----CCchhhhhcCCCCCccEEeCCCCcccCCCcccc----cCC---------CCCCEEeccCccCC-Cccc---
Q 004747 307 NDLSG----PLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI----TEL---------KSLQALFLSNNLLI-GEIP--- 365 (732)
Q Consensus 307 n~l~~----~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l----~~l---------~~L~~L~Ls~n~l~-~~~p--- 365 (732)
|.+++ .+|..+..++ +|++|++++|.+++..+..+ ..+ ++|++|++++|+++ +.++
T Consensus 104 n~l~~~~~~~l~~~l~~~~---~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHT---PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCT---TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCC---CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 77765 2444555544 67777777777753333222 223 67888888888776 3344
Q ss_pred cccCCCCCCCEEEccCCcCc--c---ccCccccCCcCcceeeccccccc----ccCcccccCCCCCcEEEcccCceeee-
Q 004747 366 ARIGNLTYLQVIDLSHNMLS--G---SIPLNIVGCFQLLALIVNNNNLS----GEIQPELDALDSLKILDISNNQISGE- 435 (732)
Q Consensus 366 ~~l~~l~~L~~L~Ls~n~l~--~---~~p~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~- 435 (732)
..+..+++|+.|++++|.++ | ..+..+..+++|+.|++++|.++ +.++..+..+++|+.|+|++|.+++.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 35667778888888888776 2 23446677788888888888875 55677788889999999999998865
Q ss_pred ---ccccC--CCCCCCCEEEccCCcccc----cchhhh-hcCCCCCEEEcccCCCccccc--hhh-hcCCCCCEEEccC
Q 004747 436 ---IPLTL--AGLKSLEIVDFSSNNLSG----SLNDAI-TKWTNLKYFSIARNKLSGNLP--NWL-FSFQAIQMMDFST 501 (732)
Q Consensus 436 ---~p~~~--~~l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~L~~N~l~~~~p--~~~-~~~~~L~~L~ls~ 501 (732)
++..+ ..+++|++|++++|.+++ .+|..+ .++++|++|++++|++++..+ ..+ ..++.++.+++..
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 45555 348999999999999997 477777 668999999999999987664 222 2244444444433
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.7e-21 Score=194.42 Aligned_cols=177 Identities=19% Similarity=0.236 Sum_probs=91.8
Q ss_pred cccCCCCCcEEEcccCc-eeeeccccCCCCCCCCEEEccC-CcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCC
Q 004747 415 ELDALDSLKILDISNNQ-ISGEIPLTLAGLKSLEIVDFSS-NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ 492 (732)
Q Consensus 415 ~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 492 (732)
.+..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|++|++++|++++ +|. +..++
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence 34444555555555553 4433333445555555555554 55554444444555555555555555543 333 44444
Q ss_pred CCC---EEEccCC-cCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccce-EEEc
Q 004747 493 AIQ---MMDFSTN-KFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAV-GMDL 567 (732)
Q Consensus 493 ~L~---~L~ls~N-~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdL 567 (732)
+|+ +|++++| .+++ +|...|.. ++.|+ .|++
T Consensus 128 ~L~~L~~L~l~~N~~l~~-i~~~~~~~-------------------------------------------l~~L~~~L~l 163 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTS-IPVNAFQG-------------------------------------------LCNETLTLKL 163 (239)
T ss_dssp BCCSEEEEEEESCTTCCE-ECTTTTTT-------------------------------------------TBSSEEEEEC
T ss_pred ccccccEEECCCCcchhh-cCcccccc-------------------------------------------hhcceeEEEc
Confidence 444 5555555 4432 22221111 44555 6666
Q ss_pred cCCcccccCCcccccccCCceeeccccc-ceecCCc-ccCc-cCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccC
Q 004747 568 SDNLLHGTIPKGLFQLQGLEYLNLSFNF-LDGQVPG-LYRL-RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 641 (732)
Q Consensus 568 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~-l~~l-~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 641 (732)
++|+++ .+|......++|++|++++|+ +++..+. +..+ ++|+.||+++|++++. |.. .+++|+.|+++++
T Consensus 164 ~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp CSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 666665 455444444566666666663 6644444 5566 6677777777776643 322 4556666666654
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.2e-21 Score=192.34 Aligned_cols=196 Identities=19% Similarity=0.160 Sum_probs=125.8
Q ss_pred CCCEEeccCccCCCccccccCCCCCCCEEEccCCc-CccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEc
Q 004747 349 SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM-LSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI 427 (732)
Q Consensus 349 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 427 (732)
+|++|++++|++++..+..|.++++|++|++++|+ ++ +..+..|..+++|++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~------------------------~i~~~~f~~l~~L~~L~l 87 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ------------------------QLESHSFYNLSKVTHIEI 87 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC------------------------EECTTTEESCTTCCEEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc------------------------eeCHhHcCCCcCCcEEEC
Confidence 55566666666554444455555555555555554 44 333334556666666666
Q ss_pred cc-CceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCC---EEEcccC-CCccccchhhhcCCCCC-EEEccC
Q 004747 428 SN-NQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLK---YFSIARN-KLSGNLPNWLFSFQAIQ-MMDFST 501 (732)
Q Consensus 428 ~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~~~~L~-~L~ls~ 501 (732)
++ |.+++..+..|.++++|++|++++|++++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ .|++++
T Consensus 88 ~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred CCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 66 66665555566666667777777666664 443 55666666 7777777 66655555677777777 777777
Q ss_pred CcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCc-ccccCCccc
Q 004747 502 NKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNL-LHGTIPKGL 580 (732)
Q Consensus 502 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~g~ip~~l 580 (732)
|+++ .+|...|. .++|+.|++++|+ +++..+..+
T Consensus 166 n~l~-~i~~~~~~--------------------------------------------~~~L~~L~L~~n~~l~~i~~~~~ 200 (239)
T 2xwt_C 166 NGFT-SVQGYAFN--------------------------------------------GTKLDAVYLNKNKYLTVIDKDAF 200 (239)
T ss_dssp CCCC-EECTTTTT--------------------------------------------TCEEEEEECTTCTTCCEECTTTT
T ss_pred CCCc-ccCHhhcC--------------------------------------------CCCCCEEEcCCCCCcccCCHHHh
Confidence 7776 44443322 2457788888884 875556667
Q ss_pred ccc-cCCceeecccccceecCCcccCccCCcEEeCCCC
Q 004747 581 FQL-QGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHN 617 (732)
Q Consensus 581 ~~l-~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N 617 (732)
..+ ++|++|++++|++++ +|.- .+++|+.|+++++
T Consensus 201 ~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 201 GGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNT 236 (239)
T ss_dssp TTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC
T ss_pred hccccCCcEEECCCCcccc-CChh-HhccCceeeccCc
Confidence 778 888888888888874 4432 5678888888876
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.1e-20 Score=187.90 Aligned_cols=179 Identities=22% Similarity=0.170 Sum_probs=107.7
Q ss_pred ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (732)
Q Consensus 326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (732)
.+.++++++.++ .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 444555555554 3443332 3455555555555544444455555555555555555554444455555555555555
Q ss_pred ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccc
Q 004747 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP 485 (732)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 485 (732)
|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 55555555556666677777777777765555556667777777777777776555566667777777777777776556
Q ss_pred hhhhcCCCCCEEEccCCcCccc
Q 004747 486 NWLFSFQAIQMMDFSTNKFMGF 507 (732)
Q Consensus 486 ~~~~~~~~L~~L~ls~N~l~~~ 507 (732)
..+..+++|+.|++++|++.+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 6666777777777777777654
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=8.8e-21 Score=196.57 Aligned_cols=173 Identities=19% Similarity=0.334 Sum_probs=121.4
Q ss_pred ccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCC
Q 004747 416 LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQ 495 (732)
Q Consensus 416 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~ 495 (732)
+..+++|++|++++|.+++..+ +..+++|++|++++|++++. + .+..+++|++|++++|++++ ++. +..+++|+
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 132 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQ 132 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCC
T ss_pred hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCC
Confidence 4556666666666666664333 66666777777777766643 2 46666777777777777664 332 66677777
Q ss_pred EEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCccccc
Q 004747 496 MMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGT 575 (732)
Q Consensus 496 ~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 575 (732)
.|++++|.+++..+ + ..+++|+.|++++|++++
T Consensus 133 ~L~l~~n~l~~~~~---l-------------------------------------------~~l~~L~~L~l~~n~l~~- 165 (308)
T 1h6u_A 133 VLYLDLNQITNISP---L-------------------------------------------AGLTNLQYLSIGNAQVSD- 165 (308)
T ss_dssp EEECCSSCCCCCGG---G-------------------------------------------GGCTTCCEEECCSSCCCC-
T ss_pred EEECCCCccCcCcc---c-------------------------------------------cCCCCccEEEccCCcCCC-
Confidence 77777777654322 1 126677788888888874
Q ss_pred CCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCccee
Q 004747 576 IPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG 645 (732)
Q Consensus 576 ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 645 (732)
++. +..+++|+.|++++|++++ ++.+..+++|++|+|++|++++..| +..+++|++|++++|++++
T Consensus 166 ~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 166 LTP-LANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Chh-hcCCCCCCEEECCCCccCc-ChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 444 7788888888888888875 4447788899999999999886653 7888899999999999876
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.6e-20 Score=198.60 Aligned_cols=183 Identities=17% Similarity=0.147 Sum_probs=94.8
Q ss_pred cEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCc-cccCCcCcce-eecc
Q 004747 327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL-NIVGCFQLLA-LIVN 404 (732)
Q Consensus 327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~-L~l~ 404 (732)
++++.++++++ .+|..+ .+++++|+|++|+++...+..|.++++|++|+|++|++.+.+|. .|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555555555 455444 24566666666666533334566666666666666665544442 3444444443 3334
Q ss_pred cccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccC-CcccccchhhhhcCC-CCCEEEcccCCCcc
Q 004747 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS-NNLSGSLNDAITKWT-NLKYFSIARNKLSG 482 (732)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~ 482 (732)
.|++....+..|..+++|++|++++|++.+..+..+....++..+++.+ +++....+..|..+. .++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 4555555555555666666666666666544444444445555566544 344433333444432 4556666666665
Q ss_pred ccchhhhcCCCCCEEEccCCcCcccCCcccc
Q 004747 483 NLPNWLFSFQAIQMMDFSTNKFMGFIPDGNF 513 (732)
Q Consensus 483 ~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~ 513 (732)
.+|.......+++.+++++++..+.+|...|
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHh
Confidence 3444444445566666655444444554443
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.6e-20 Score=193.06 Aligned_cols=208 Identities=23% Similarity=0.345 Sum_probs=113.8
Q ss_pred eeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCC
Q 004747 253 VLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLS 332 (732)
Q Consensus 253 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls 332 (732)
.+.+..+.+.+.++ ...+++|++|++++|.++. ++ .+..+++|++|++++|.+++. +. +..++ +|++|+++
T Consensus 23 ~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~---~L~~L~L~ 93 (308)
T 1h6u_A 23 KIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLT---KITELELS 93 (308)
T ss_dssp HHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCC---SCCEEECC
T ss_pred HHHhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCC---CCCEEEcc
Confidence 34455555543322 4456677777777776653 22 466666666666666666632 22 33333 66666666
Q ss_pred CCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccC
Q 004747 333 HNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEI 412 (732)
Q Consensus 333 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~ 412 (732)
+|.+++ ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++..+
T Consensus 94 ~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~----------------------- 146 (308)
T 1h6u_A 94 GNPLKN-VS-AIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP----------------------- 146 (308)
T ss_dssp SCCCSC-CG-GGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-----------------------
T ss_pred CCcCCC-ch-hhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc-----------------------
Confidence 666653 32 456666666666666666542 22 5666666666666666553221
Q ss_pred cccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCC
Q 004747 413 QPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ 492 (732)
Q Consensus 413 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 492 (732)
+..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..++
T Consensus 147 ---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~ 217 (308)
T 1h6u_A 147 ---LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTS 217 (308)
T ss_dssp ---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCT
T ss_pred ---ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCC
Confidence 3344555555555555553222 4555555555555555554322 4555555666666665553332 45555
Q ss_pred CCCEEEccCCcCc
Q 004747 493 AIQMMDFSTNKFM 505 (732)
Q Consensus 493 ~L~~L~ls~N~l~ 505 (732)
+|+.|++++|+++
T Consensus 218 ~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 218 NLFIVTLTNQTIT 230 (308)
T ss_dssp TCCEEEEEEEEEE
T ss_pred CCCEEEccCCeee
Confidence 6666666666554
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=3e-20 Score=206.63 Aligned_cols=198 Identities=22% Similarity=0.296 Sum_probs=133.7
Q ss_pred Cccce-eecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCcc
Q 004747 71 NWTGV-ACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA 149 (732)
Q Consensus 71 ~w~gv-~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 149 (732)
.|.++ .|. .++++.|+++++++++ +|..+. ++|++|+|++|.++ .+| ..+++|++|++++|.|++ +|.
T Consensus 49 ~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECL--INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHH--HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhccccc--cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence 69998 675 3578889999988886 666553 78888888888888 566 457888888888888886 565
Q ss_pred ccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccE
Q 004747 150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLV 229 (732)
Q Consensus 150 ~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~ 229 (732)
+.+ +|++|+|++| .+++ +|. .+ ++|++|++++|.+++ +|. .+++|++|++++|.+++
T Consensus 118 l~~--~L~~L~Ls~N-~l~~-lp~---~l-~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~----------- 174 (571)
T 3cvr_A 118 LPA--SLKHLDVDNN-QLTM-LPE---LP-ALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF----------- 174 (571)
T ss_dssp CCT--TCCEEECCSS-CCSC-CCC---CC-TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-----------
T ss_pred hhc--CCCEEECCCC-cCCC-CCC---cC-ccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-----------
Confidence 554 7788888877 3433 444 23 667777777777764 444 45666666666666654
Q ss_pred EECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCC-------CEEEeccCCCCCcCccccccCcCCcEE
Q 004747 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQAL-------THLNLSHNHLNYEISPRLVFFEKLLLL 302 (732)
Q Consensus 230 L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L 302 (732)
+|. +. ++|++|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|
T Consensus 175 -----------lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 175 -----------LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235 (571)
T ss_dssp -----------CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred -----------cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence 333 22 45555555555555 3343 332 44 77788888777 467767778888888
Q ss_pred EccCCCCCCCCchhhhhcC
Q 004747 303 DLSFNDLSGPLPSKIAQTT 321 (732)
Q Consensus 303 ~Ls~n~l~~~~p~~~~~l~ 321 (732)
++++|.+++.+|..+..+.
T Consensus 236 ~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 236 ILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp ECCSSSCCHHHHHHHHHHH
T ss_pred EeeCCcCCCcCHHHHHHhh
Confidence 8888888877777776654
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.1e-19 Score=192.17 Aligned_cols=241 Identities=17% Similarity=0.177 Sum_probs=185.9
Q ss_pred CEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCc-ccccCCCCCcE-EEcc
Q 004747 351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQ-PELDALDSLKI-LDIS 428 (732)
Q Consensus 351 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~L~ 428 (732)
++++.++++++ .+|..+ .+++++|+|++|+++...+..|.++++|++|++++|++.+.++ ..|.++++++. +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67888999988 677766 3689999999999996555678999999999999999877655 46788888765 6677
Q ss_pred cCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEccc-CCCccccchhhhcCC-CCCEEEccCCcCcc
Q 004747 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR-NKLSGNLPNWLFSFQ-AIQMMDFSTNKFMG 506 (732)
Q Consensus 429 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~-~L~~L~ls~N~l~~ 506 (732)
.|+++...|..|..+++|++|++++|++....+..+....++..+++.+ +++....+..+..+. .++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 8999988888999999999999999999977776777778888999876 456644455566654 68899999999973
Q ss_pred cCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccC-CcccccCCc-cccccc
Q 004747 507 FIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSD-NLLHGTIPK-GLFQLQ 584 (732)
Q Consensus 507 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~-N~l~g~ip~-~l~~l~ 584 (732)
+|...|. ...++.+++++ |.++ .+|. .+..++
T Consensus 169 -i~~~~f~--------------------------------------------~~~L~~l~l~~~n~l~-~i~~~~f~~l~ 202 (350)
T 4ay9_X 169 -IHNSAFN--------------------------------------------GTQLDELNLSDNNNLE-ELPNDVFHGAS 202 (350)
T ss_dssp -ECTTSST--------------------------------------------TEEEEEEECTTCTTCC-CCCTTTTTTEE
T ss_pred -CChhhcc--------------------------------------------ccchhHHhhccCCccc-CCCHHHhccCc
Confidence 4544432 34678899985 5565 6775 468899
Q ss_pred CCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcc
Q 004747 585 GLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 643 (732)
Q Consensus 585 ~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 643 (732)
+|++|||++|+|+. +|. ..+.+|+.|.+.++.--..+| .+.++++|+.++++++..
T Consensus 203 ~L~~LdLs~N~l~~-lp~-~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 203 GPVILDISRTRIHS-LPS-YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp CCSEEECTTSCCCC-CCS-SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred ccchhhcCCCCcCc-cCh-hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence 99999999999984 444 224556666665554444677 478899999999988754
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.9e-19 Score=175.33 Aligned_cols=151 Identities=21% Similarity=0.200 Sum_probs=78.0
Q ss_pred cEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccc
Q 004747 327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN 406 (732)
Q Consensus 327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 406 (732)
+.++++++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------ 68 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP------------------ 68 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC------------------
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC------------------
Confidence 34555555555 344332 235555666655555444444555555555555555554322
Q ss_pred cccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccch
Q 004747 407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN 486 (732)
Q Consensus 407 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 486 (732)
+..+..+++|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus 69 ------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 69 ------NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp ------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ------hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence 22334455555555555555544444455555555555555555544444455555555555555555544444
Q ss_pred hhhcCCCCCEEEccCCcC
Q 004747 487 WLFSFQAIQMMDFSTNKF 504 (732)
Q Consensus 487 ~~~~~~~L~~L~ls~N~l 504 (732)
.+..+++|+.|++++|.+
T Consensus 143 ~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTTTCTTCCEEECCSCCB
T ss_pred HhccCCCccEEEecCCCe
Confidence 445555555555555544
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=7.7e-19 Score=170.99 Aligned_cols=89 Identities=25% Similarity=0.160 Sum_probs=43.9
Q ss_pred CccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecc
Q 004747 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (732)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (732)
+|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .++.|+.|++.
T Consensus 101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~ 173 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEW 173 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHH
T ss_pred CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHH
Confidence 44444444444443333334445555555555555554444344555555555555554432 23345555555
Q ss_pred cccccccCcccccCCC
Q 004747 405 NNNLSGEIQPELDALD 420 (732)
Q Consensus 405 ~n~l~~~~~~~~~~l~ 420 (732)
.|+++|.+|..++.++
T Consensus 174 ~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 174 INKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHCTTTBBCTTSSBC
T ss_pred HHhCCceeeccCcccc
Confidence 5555555555554443
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1.1e-18 Score=194.06 Aligned_cols=189 Identities=21% Similarity=0.313 Sum_probs=131.8
Q ss_pred CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747 107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186 (732)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~ 186 (732)
+|++|++++|.+++ +|..+. ++|++|+|++|.|+ .+| ..+++|++|++++| .+++ +|. +. .+|++|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N-~l~~-ip~-l~---~~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDN-RLST-LPE-LP---ASLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSS-CCSC-CCC-CC---TTCCEEE
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCC-CCCC-cch-hh---cCCCEEE
Confidence 67888888888775 565442 67888888888777 455 34566666666666 3333 443 22 2555555
Q ss_pred eeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccc
Q 004747 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP 266 (732)
Q Consensus 187 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 266 (732)
+++|.+++ +|. .+++ |++|++++|.+++ +|. .+++|++|++++|.+++ +|
T Consensus 127 Ls~N~l~~-lp~---~l~~---------------------L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp 176 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPAL---------------------LEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LP 176 (571)
T ss_dssp CCSSCCSC-CCC---CCTT---------------------CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred CCCCcCCC-CCC---cCcc---------------------ccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cc
Confidence 55555553 333 3444 5555555555554 444 46789999999999987 66
Q ss_pred hhhhccCCCCEEEeccCCCCCcCccccccCcCC-------cEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCC
Q 004747 267 TCIASLQALTHLNLSHNHLNYEISPRLVFFEKL-------LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339 (732)
Q Consensus 267 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~ 339 (732)
. +. ++|++|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..++ +|+.|++++|.+++.
T Consensus 177 ~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~---~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 177 E-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD---PTCTIILEDNPLSSR 245 (571)
T ss_dssp C-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSC---TTEEEECCSSSCCHH
T ss_pred h-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC---CCCEEEeeCCcCCCc
Confidence 6 65 89999999999998 5666 544 77 99999999999 6888887766 899999999999998
Q ss_pred CcccccCCCC
Q 004747 340 IPLKITELKS 349 (732)
Q Consensus 340 ~p~~l~~l~~ 349 (732)
+|..+..++.
T Consensus 246 ~p~~l~~l~~ 255 (571)
T 3cvr_A 246 IRESLSQQTA 255 (571)
T ss_dssp HHHHHHHHHH
T ss_pred CHHHHHHhhc
Confidence 8888776543
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1.8e-18 Score=177.48 Aligned_cols=189 Identities=20% Similarity=0.274 Sum_probs=141.6
Q ss_pred ceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccC
Q 004747 399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478 (732)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 478 (732)
..+.+..+.+.+..+ ...+++|+.|++++|.+.+. + .+..+++|++|++++|++++..+ +..+++|++|++++|
T Consensus 27 ~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 27 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 334444554444322 34567788888888887743 3 36777888888888888876544 777888888888888
Q ss_pred CCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhh
Q 004747 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQ 558 (732)
Q Consensus 479 ~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (732)
++++ +| .+..+++|++|++++|++++. + . ...
T Consensus 101 ~l~~-~~-~l~~l~~L~~L~L~~n~i~~~-~-~--------------------------------------------l~~ 132 (291)
T 1h6t_A 101 KVKD-LS-SLKDLKKLKSLSLEHNGISDI-N-G--------------------------------------------LVH 132 (291)
T ss_dssp CCCC-GG-GGTTCTTCCEEECTTSCCCCC-G-G--------------------------------------------GGG
T ss_pred cCCC-Ch-hhccCCCCCEEECCCCcCCCC-h-h--------------------------------------------hcC
Confidence 8874 33 377888888888888887642 1 1 112
Q ss_pred cccceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEc
Q 004747 559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNL 638 (732)
Q Consensus 559 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 638 (732)
+++|+.|++++|++++ + ..+..+++|++|++++|++++..| +..+++|+.|++++|.+++. | .+..+++|+.|++
T Consensus 133 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l 207 (291)
T 1h6t_A 133 LPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLEL 207 (291)
T ss_dssp CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEE
T ss_pred CCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEEC
Confidence 6778889999999885 3 578889999999999999986555 88899999999999999864 4 4888999999999
Q ss_pred ccCcceee
Q 004747 639 SYNSFSGF 646 (732)
Q Consensus 639 s~N~l~g~ 646 (732)
++|+++..
T Consensus 208 ~~n~i~~~ 215 (291)
T 1h6t_A 208 FSQECLNK 215 (291)
T ss_dssp EEEEEECC
T ss_pred cCCcccCC
Confidence 99998763
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.4e-17 Score=164.49 Aligned_cols=161 Identities=24% Similarity=0.253 Sum_probs=121.6
Q ss_pred CCCCCCCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCC
Q 004747 63 SWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142 (732)
Q Consensus 63 ~w~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 142 (732)
.|.+...|+|.+|.|... .+. .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++
T Consensus 12 ~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 346778899999999631 122 3444333 7788888888888887788888888888888888888
Q ss_pred CCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccc
Q 004747 143 VGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD 222 (732)
Q Consensus 143 ~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 222 (732)
++..+..|..+++|++|+|++| .+++..+..+..+ ++|++|++++|.++ .+|..+..+++|++|+|++|++++..+.
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRL-VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCcChhhcccCCCcCEEECCCC-cCCccChhHhCcc-hhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 7666677788888888888888 5555555556667 78888888888888 6777888888888888888888876655
Q ss_pred cc---ccccEEECCCCcCcccc
Q 004747 223 FY---QSLLVLNLGSNRFSGTL 241 (732)
Q Consensus 223 ~~---~~L~~L~L~~n~l~~~~ 241 (732)
.+ .+|+.|++++|.+....
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTTB
T ss_pred HHhCCCCCCEEEeeCCCccCCc
Confidence 44 45888888888876543
No 103
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=5.3e-19 Score=204.03 Aligned_cols=226 Identities=21% Similarity=0.183 Sum_probs=116.0
Q ss_pred HHhHHHHHHHHhcCCCC-CCCCCCC--CCCCCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCC
Q 004747 41 LEDKASLLLFKSLVQDP-TQKLSSW--VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNA 117 (732)
Q Consensus 41 ~~~~~~l~~~k~~~~~~-~~~l~~w--~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~ 117 (732)
..++++|.++...+..+ ...-..| .....+.|.++.++ ..++++|+|.++.+... +..+ ++.++|+.|.
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~ 202 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDEA-NQAL-----LQHKKLSQYS 202 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec--CCccceEEeeCCCCCcc-hhhH-----hhcCccCccc
Confidence 35667888887665332 2233456 34456789888875 46899999998887753 3333 3344444444
Q ss_pred CCC---------cccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEee
Q 004747 118 FTG---------RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188 (732)
Q Consensus 118 l~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls 188 (732)
+.+ ..+..|..++.|++|+|++|.+. .+|..+.++++|++|+|++| .++ .+|..++.+ ++|++|+|+
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l-~~L~~L~Ls 278 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN-SLT-ELPAEIKNL-SNLRVLDLS 278 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS-CCS-CCCGGGGGG-TTCCEEECT
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC-cCc-ccChhhhCC-CCCCEEeCc
Confidence 332 34677888999999999999988 67777778999999999998 444 778888888 889999999
Q ss_pred CcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchh
Q 004747 189 FNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC 268 (732)
Q Consensus 189 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 268 (732)
+|.++ .+|..++++++|++|+|++|.++ .+|..++.+++|++|+|++|.+++.+|..
T Consensus 279 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~----------------------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 279 HNRLT-SLPAELGSCFQLKYFYFFDNMVT----------------------TLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp TSCCS-SCCSSGGGGTTCSEEECCSSCCC----------------------CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCcCC-ccChhhcCCCCCCEEECCCCCCC----------------------ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 99888 67888888888888888887765 45555667777777777777777777766
Q ss_pred hhccCC-CCEEEeccCCCCCcCccccccCcCCcEEEccCC
Q 004747 269 IASLQA-LTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFN 307 (732)
Q Consensus 269 l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 307 (732)
+..+.. +..+++++|.+++.+|.. |+.|+++.|
T Consensus 336 ~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 336 LTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred HhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 654322 223567777776666543 344555544
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=6.2e-18 Score=190.17 Aligned_cols=192 Identities=18% Similarity=0.248 Sum_probs=150.7
Q ss_pred CCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEc
Q 004747 348 KSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI 427 (732)
Q Consensus 348 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 427 (732)
..+..+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|+.|+|
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 345566777777765443 4678889999999999874 34 57888999999999999887665 788899999999
Q ss_pred ccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCccc
Q 004747 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF 507 (732)
Q Consensus 428 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~ 507 (732)
++|.+.+ +| .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 9998885 33 688889999999999998863 3578888999999999988864 5678888899999998888765
Q ss_pred CCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCc
Q 004747 508 IPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLE 587 (732)
Q Consensus 508 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 587 (732)
.| +. .+++|+.|+|++|++++ +| .+..+++|+
T Consensus 169 ~~---l~-------------------------------------------~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~ 200 (605)
T 1m9s_A 169 VP---LA-------------------------------------------GLTKLQNLYLSKNHISD-LR-ALAGLKNLD 200 (605)
T ss_dssp GG---GT-------------------------------------------TCTTCCEEECCSSCCCB-CG-GGTTCTTCS
T ss_pred hh---hc-------------------------------------------cCCCCCEEECcCCCCCC-Ch-HHccCCCCC
Confidence 44 11 16778888888888885 44 588888888
Q ss_pred eeecccccceec
Q 004747 588 YLNLSFNFLDGQ 599 (732)
Q Consensus 588 ~L~Ls~N~l~~~ 599 (732)
.|+|++|.+++.
T Consensus 201 ~L~L~~N~l~~~ 212 (605)
T 1m9s_A 201 VLELFSQECLNK 212 (605)
T ss_dssp EEECCSEEEECC
T ss_pred EEEccCCcCcCC
Confidence 888888888754
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.6e-17 Score=170.41 Aligned_cols=188 Identities=23% Similarity=0.323 Sum_probs=106.0
Q ss_pred cCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEe
Q 004747 251 LTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLD 330 (732)
Q Consensus 251 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~ 330 (732)
+..+.+..+.+.+..+ +..+++|++|++++|.++.. +.+..+++|++|++++|++++..+ +..+. +|++|+
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~---~L~~L~ 96 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLK---NLGWLF 96 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCT---TCCEEE
T ss_pred HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCC---CCCEEE
Confidence 4444555555554322 34566777777777766533 235666666666666666664322 33333 566666
Q ss_pred CCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccc
Q 004747 331 LSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG 410 (732)
Q Consensus 331 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 410 (732)
+++|.+++ +| .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 97 l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~----------------------- 149 (291)
T 1h6t_A 97 LDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----------------------- 149 (291)
T ss_dssp CCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-----------------------
T ss_pred CCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-----------------------
Confidence 66666653 22 355566666666666666542 2355556666666666655532
Q ss_pred cCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCc
Q 004747 411 EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481 (732)
Q Consensus 411 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 481 (732)
..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 150 ---~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 150 ---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred ---hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 234455566666666666654433 55666666666666666543 2 2556666666666666665
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=161.44 Aligned_cols=151 Identities=21% Similarity=0.269 Sum_probs=70.7
Q ss_pred EEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccc-cccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccc
Q 004747 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP-ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN 406 (732)
Q Consensus 328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 406 (732)
.+++++|.++ .+|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|.++++|+.|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4555555554 3444332 234555555555554322 23455555555555555555444434444444444444444
Q ss_pred cccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCc
Q 004747 407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481 (732)
Q Consensus 407 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 481 (732)
.+++..+..+..+++|++|++++|++++..|..|.++++|++|++++|++++..|..+..+++|++|++++|++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 444433334444444444444444444444444444444444444444444444444444444444444444443
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=2.5e-17 Score=161.54 Aligned_cols=152 Identities=20% Similarity=0.289 Sum_probs=76.7
Q ss_pred cEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccc
Q 004747 327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN 406 (732)
Q Consensus 327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 406 (732)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|+.|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555555 3444332 45556666666555444445555556666666666555444444444444444444444
Q ss_pred cccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCc
Q 004747 407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481 (732)
Q Consensus 407 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 481 (732)
.++...+..|..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 444333333444555555555555555444444555555555555555555444444444455555555555443
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=2.1e-17 Score=175.32 Aligned_cols=175 Identities=23% Similarity=0.173 Sum_probs=99.5
Q ss_pred EEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccC-CCCCCCEEEccCCcCccccCccccCCcCcceeecccc
Q 004747 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG-NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN 406 (732)
Q Consensus 328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 406 (732)
.++++++.++ .+|..+. +.++.|+|++|++++..+..+. ++++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 3444444444 2333322 2344555555555443333343 4555555555555555444444555555555555555
Q ss_pred cccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhh---hcCCCCCEEEcccCCCccc
Q 004747 407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI---TKWTNLKYFSIARNKLSGN 483 (732)
Q Consensus 407 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~ 483 (732)
++.+..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..+ ..+++|+.|+|++|++++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 5554444556666677777777777776666667777777777777777765444444 4567777777777777755
Q ss_pred cchhhhcCCC--CCEEEccCCcCc
Q 004747 484 LPNWLFSFQA--IQMMDFSTNKFM 505 (732)
Q Consensus 484 ~p~~~~~~~~--L~~L~ls~N~l~ 505 (732)
.+..+..++. ++.|++++|++.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 4555666665 366777777765
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.4e-17 Score=176.66 Aligned_cols=177 Identities=26% Similarity=0.227 Sum_probs=132.3
Q ss_pred cEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCccccc-CCCCCCEEeccCccCCCccccccCCCCCCCEEE
Q 004747 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT-ELKSLQALFLSNNLLIGEIPARIGNLTYLQVID 378 (732)
Q Consensus 300 ~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 378 (732)
+.++++++.++ .+|..+.. .++.|++++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~~-----~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLPS-----YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCS-SCCSSCCT-----TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcC-ccCccCCC-----CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 45666666665 34543322 567777777777765565665 777888888888888766666777888888888
Q ss_pred ccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccC---CCCCCCCEEEccCCc
Q 004747 379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL---AGLKSLEIVDFSSNN 455 (732)
Q Consensus 379 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~Ls~N~ 455 (732)
|++|++++..+..|.++++|+.|++++|.+.+..+..|..+++|+.|+|++|++++..+..| ..+++|+.|+|++|+
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 88888876666677778888888888888887777788888899999999998886544445 568899999999999
Q ss_pred ccccchhhhhcCCC--CCEEEcccCCCcc
Q 004747 456 LSGSLNDAITKWTN--LKYFSIARNKLSG 482 (732)
Q Consensus 456 l~~~~~~~~~~l~~--L~~L~L~~N~l~~ 482 (732)
+++..+..+..++. ++.|++++|++..
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCccCHHHhhhccHhhcceEEecCCCccC
Confidence 99777777888877 4889999998874
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=2.9e-17 Score=161.04 Aligned_cols=159 Identities=17% Similarity=0.194 Sum_probs=143.6
Q ss_pred CCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccC-ccccCCcCcceeecccccccccCcccccCCCCCcEEEcc
Q 004747 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP-LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428 (732)
Q Consensus 350 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 428 (732)
-+.+++++|.++ .+|..+. ..+++|++++|.+++..+ ..+..+++|+.|++++|.+++..+..|..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 368999999998 5676553 457899999999997755 457899999999999999999888899999999999999
Q ss_pred cCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccC
Q 004747 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFI 508 (732)
Q Consensus 429 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~ 508 (732)
+|++++..+..|.++++|++|++++|++++..|..+..+++|++|+|++|++++..|..+..+++|+.|++++|++.+..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99999888888999999999999999999988999999999999999999999888999999999999999999998765
Q ss_pred Ccc
Q 004747 509 PDG 511 (732)
Q Consensus 509 p~~ 511 (732)
+..
T Consensus 170 ~l~ 172 (220)
T 2v70_A 170 YLA 172 (220)
T ss_dssp GGH
T ss_pred chH
Confidence 543
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=2.1e-17 Score=185.86 Aligned_cols=190 Identities=24% Similarity=0.329 Sum_probs=127.2
Q ss_pred ccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccC
Q 004747 227 LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF 306 (732)
Q Consensus 227 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 306 (732)
+..+.+..+.+....+ +..+.+|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4555666666654433 4566777778888777764 33 47777778888888777775443 77777777777777
Q ss_pred CCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCcc
Q 004747 307 NDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386 (732)
Q Consensus 307 n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 386 (732)
|.+++ +| .+..+ ++|+.|+|++|.+.+ + ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+
T Consensus 97 N~l~~-l~-~l~~l---~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 97 NKIKD-LS-SLKDL---KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp SCCCC-CT-TSTTC---TTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CCCCC-Ch-hhccC---CCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 77764 22 33333 377777777777764 3 3466777777777777777754 456777777777777777775
Q ss_pred ccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeee
Q 004747 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE 435 (732)
Q Consensus 387 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 435 (732)
..| +..+++|+.|++++|.+++. +.+..+++|+.|+|++|.+.+.
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 544 66677777777777777654 2466677777777777776643
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=3.8e-17 Score=160.20 Aligned_cols=154 Identities=24% Similarity=0.250 Sum_probs=141.2
Q ss_pred CEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccC
Q 004747 351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN 430 (732)
Q Consensus 351 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 430 (732)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|+.|++++|.+++..+..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 67899999988 5676554 78999999999999877778999999999999999999999999999999999999999
Q ss_pred ceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCccc
Q 004747 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF 507 (732)
Q Consensus 431 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~ 507 (732)
.+++..+..|.++++|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++...
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 99976666789999999999999999998899999999999999999999988888899999999999999998753
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=8.6e-20 Score=204.11 Aligned_cols=77 Identities=26% Similarity=0.195 Sum_probs=38.8
Q ss_pred cccceEEEccCCcccccCCcccccccCCceeecccccceecC-Cc-ccCccCCcEEeCCCCcCcccCCcC---CCCCCCC
Q 004747 559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQV-PG-LYRLRSLRALDLSHNSLTGQIPGN---ISSLQEL 633 (732)
Q Consensus 559 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~-l~~l~~L~~LdLs~N~l~~~ip~~---l~~l~~L 633 (732)
+++|+.|+|++|++++ +| .++++++|+.|+|++|++++.+ |. ++.+++|+.|+|++|.+++.+|.. +..+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 3444455555555543 44 4555555555555555555443 44 555555555555555555443321 1124555
Q ss_pred CEEE
Q 004747 634 TLLN 637 (732)
Q Consensus 634 ~~L~ 637 (732)
+.||
T Consensus 563 ~~L~ 566 (567)
T 1dce_A 563 SSIL 566 (567)
T ss_dssp SEEE
T ss_pred CccC
Confidence 5554
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.6e-17 Score=159.13 Aligned_cols=155 Identities=22% Similarity=0.263 Sum_probs=116.5
Q ss_pred CEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecC
Q 004747 471 KYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDT 550 (732)
Q Consensus 471 ~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (732)
+++++++|.++ .+|..+. .++++|++++|++++..+...|..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~----------------------------------- 52 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR----------------------------------- 52 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGG-----------------------------------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCcccccc-----------------------------------
Confidence 56666666664 4555443 277788888888765544333222
Q ss_pred CchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCC
Q 004747 551 NELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISS 629 (732)
Q Consensus 551 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~ 629 (732)
+++|++|+|++|++++..|..+.++++|++|+|++|++++..|. +..+++|++|+|++|++++.+|..|..
T Consensus 53 --------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (192)
T 1w8a_A 53 --------LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124 (192)
T ss_dssp --------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred --------CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc
Confidence 67888999999999988888999999999999999999988887 889999999999999999999999999
Q ss_pred CCCCCEEEcccCcceeeCCCCCCCCCcCc-cccCCCCCCCCCC
Q 004747 630 LQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLESS 671 (732)
Q Consensus 630 l~~L~~L~ls~N~l~g~ip~~~~~~~~~~-~~~gn~~lcg~~~ 671 (732)
+++|++|++++|++++..+.......+.. .+.++...|+.|.
T Consensus 125 l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 125 LNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred CCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 99999999999999987653211001111 3455555666553
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=1.2e-16 Score=157.82 Aligned_cols=151 Identities=23% Similarity=0.235 Sum_probs=67.4
Q ss_pred ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (732)
Q Consensus 326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (732)
.+.++.+++.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 344555555554 4444332 4566666666666555555555556666666666555433223333333333333333
Q ss_pred ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCC
Q 004747 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480 (732)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 480 (732)
|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 3333333333333444444444444444 3333333444444444444444433333333344444444444433
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=5.2e-18 Score=195.75 Aligned_cols=181 Identities=23% Similarity=0.211 Sum_probs=74.1
Q ss_pred ccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCC
Q 004747 414 PELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA 493 (732)
Q Consensus 414 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 493 (732)
..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp ----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 33444555555555555555 34444445555555555555555 44555555555555555555555 44555555555
Q ss_pred CCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCccc
Q 004747 494 IQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLH 573 (732)
Q Consensus 494 L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 573 (732)
|++|+|++|.++ .+|.. |.. +++|+.|+|++|.|+
T Consensus 295 L~~L~L~~N~l~-~lp~~-~~~-------------------------------------------l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDNMVT-TLPWE-FGN-------------------------------------------LCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCSSCCC-CCCSS-TTS-------------------------------------------CTTCCCEECTTSCCC
T ss_pred CCEEECCCCCCC-ccChh-hhc-------------------------------------------CCCccEEeCCCCccC
Confidence 555555555553 33433 111 445555555555555
Q ss_pred ccCCcccccccC-CceeecccccceecCCcccCccCCcEEeCCCC--------cCcccCCcCCCCCCCCCEEEcccCcce
Q 004747 574 GTIPKGLFQLQG-LEYLNLSFNFLDGQVPGLYRLRSLRALDLSHN--------SLTGQIPGNISSLQELTLLNLSYNSFS 644 (732)
Q Consensus 574 g~ip~~l~~l~~-L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N--------~l~~~ip~~l~~l~~L~~L~ls~N~l~ 644 (732)
|.+|..+..+.. +..|+|++|.++|.+|. .|+.|++++| .+.+..+..+.++..+....+++|-+.
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPH-----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----C-----------------------------------------CCC
T ss_pred CCChHHHhhcchhhhHHhhccCcccCcCcc-----ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 555555443321 12355666666655553 3444555555 344444444555666666667777665
Q ss_pred eeC
Q 004747 645 GFV 647 (732)
Q Consensus 645 g~i 647 (732)
+..
T Consensus 405 ~~~ 407 (727)
T 4b8c_D 405 QHY 407 (727)
T ss_dssp GGG
T ss_pred ccc
Confidence 433
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=1.2e-19 Score=203.04 Aligned_cols=202 Identities=20% Similarity=0.236 Sum_probs=98.1
Q ss_pred cccccCeeeCCCCccccccchhhhccCCCCEEEeccCC-------------CCCcCccccccCcCCcEEE-ccCCCCCCC
Q 004747 247 SAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH-------------LNYEISPRLVFFEKLLLLD-LSFNDLSGP 312 (732)
Q Consensus 247 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l~~L~~L~-Ls~n~l~~~ 312 (732)
.+++|+.|++++|.+. .+|..++++++|++|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 4455666666666654 455566666666666654442 2233344444444444444 3332211
Q ss_pred CchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccc
Q 004747 313 LPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNI 392 (732)
Q Consensus 313 ~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 392 (732)
.|+.+.+++|.++. +|. ..|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|
T Consensus 424 ------------~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp--- 479 (567)
T 1dce_A 424 ------------DLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALP--- 479 (567)
T ss_dssp ------------HHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCC---
T ss_pred ------------hhhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccc---
Confidence 22223333333331 111 124445555554443 333 444444555555444444 333
Q ss_pred cCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccc-hhhhhcCCCCC
Q 004747 393 VGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL-NDAITKWTNLK 471 (732)
Q Consensus 393 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~ 471 (732)
..++.+++|+.|+|++|.+++ +| .+..+++|++|++++|++++.. |..+..+++|+
T Consensus 480 ---------------------~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 480 ---------------------PALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp ---------------------GGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred ---------------------hhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence 344455555555555555553 34 4555555666666666655544 55555566666
Q ss_pred EEEcccCCCccccch---hhhcCCCCCEEE
Q 004747 472 YFSIARNKLSGNLPN---WLFSFQAIQMMD 498 (732)
Q Consensus 472 ~L~L~~N~l~~~~p~---~~~~~~~L~~L~ 498 (732)
.|++++|++++..|. .+..+++|+.|+
T Consensus 537 ~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 537 LLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred EEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 666666665544332 223356666654
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.4e-17 Score=166.37 Aligned_cols=167 Identities=20% Similarity=0.287 Sum_probs=106.3
Q ss_pred CcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccC
Q 004747 422 LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST 501 (732)
Q Consensus 422 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~ 501 (732)
+..+++++|.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 334444444444221 23344555555555555542 22 34555555555555555553322 55566666666666
Q ss_pred CcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccc
Q 004747 502 NKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF 581 (732)
Q Consensus 502 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 581 (732)
|++++ +|... .+.|+.|++++|++++ ++ .+.
T Consensus 95 N~l~~-l~~~~----------------------------------------------~~~L~~L~L~~N~l~~-~~-~l~ 125 (263)
T 1xeu_A 95 NRLKN-LNGIP----------------------------------------------SACLSRLFLDNNELRD-TD-SLI 125 (263)
T ss_dssp SCCSC-CTTCC----------------------------------------------CSSCCEEECCSSCCSB-SG-GGT
T ss_pred CccCC-cCccc----------------------------------------------cCcccEEEccCCccCC-Ch-hhc
Confidence 66543 12110 1456778888888874 43 577
Q ss_pred cccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceee
Q 004747 582 QLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF 646 (732)
Q Consensus 582 ~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 646 (732)
.+++|++|++++|++++ +|.+..+++|+.|++++|++++. ..+..+++|++|++++|++++.
T Consensus 126 ~l~~L~~L~Ls~N~i~~-~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 126 HLKNLEILSIRNNKLKS-IVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TCTTCCEEECTTSCCCB-CGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcccccEEECCCCcCCC-ChHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 88888899999998875 45688888999999999999876 6688889999999999998866
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.7e-16 Score=152.84 Aligned_cols=149 Identities=17% Similarity=0.266 Sum_probs=81.8
Q ss_pred CccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecc
Q 004747 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (732)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (732)
+|+.|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~------------------ 102 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTS------------------ 102 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBG------------------
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCc------------------
Confidence 4555555555555 334 34555555555555554431 1234455555555555555544
Q ss_pred cccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCc-ccccchhhhhcCCCCCEEEcccCCCccc
Q 004747 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNN-LSGSLNDAITKWTNLKYFSIARNKLSGN 483 (732)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 483 (732)
..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+ ++ .++ .+..+++|++|++++|++++
T Consensus 103 ------~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~- 173 (197)
T 4ezg_A 103 ------DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD- 173 (197)
T ss_dssp ------GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-
T ss_pred ------ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-
Confidence 344445555666666666666665555556666666666666665 43 333 45666666666666666653
Q ss_pred cchhhhcCCCCCEEEccCCcCc
Q 004747 484 LPNWLFSFQAIQMMDFSTNKFM 505 (732)
Q Consensus 484 ~p~~~~~~~~L~~L~ls~N~l~ 505 (732)
++ .+..+++|+.|++++|++.
T Consensus 174 ~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 174 YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CT-TGGGCSSCCEEEECBC---
T ss_pred hH-HhccCCCCCEEEeeCcccC
Confidence 33 5566666666666666654
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=3.1e-16 Score=150.97 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=107.9
Q ss_pred cccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCC
Q 004747 293 LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT 372 (732)
Q Consensus 293 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 372 (732)
...+++|+.|++++|.++ .+| .+..++ +|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..++
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~---~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAH---NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCT---TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCC---CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 467889999999999998 555 455555 8999999999776 334788999999999999999988888999999
Q ss_pred CCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEcc
Q 004747 373 YLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFS 452 (732)
Q Consensus 373 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 452 (732)
+|++|++++|.+++..|..+..+++|+.|++++|.. ++ .+| .+..+++|++|+++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~-----------------------i~-~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA-----------------------IT-DIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTB-----------------------CC-CCG-GGGGCSSCCEEECT
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCC-----------------------cc-ccH-hhcCCCCCCEEECC
Confidence 999999999999876666655555555555555542 22 222 34445555555555
Q ss_pred CCcccccchhhhhcCCCCCEEEcccCCCc
Q 004747 453 SNNLSGSLNDAITKWTNLKYFSIARNKLS 481 (732)
Q Consensus 453 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 481 (732)
+|++++. + .+..+++|++|++++|++.
T Consensus 168 ~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 168 FDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred CCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 5555432 2 3445555555555555543
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.2e-16 Score=167.15 Aligned_cols=286 Identities=11% Similarity=0.045 Sum_probs=143.1
Q ss_pred cCCcEEEeeCcccccccCcccCC-CCCCCEEEeecccCC--CccccccccccEEECCCCcCccccCchhhc--------c
Q 004747 180 MNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNLT--GNVHDFYQSLLVLNLGSNRFSGTLPCFAAS--------A 248 (732)
Q Consensus 180 ~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------~ 248 (732)
.++++|.++++ +.......+.. +++|++|||++|++. ......+..++.+.+..|.+ .+..|.. +
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEEC
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccccc---CHHHhccccccccccc
Confidence 46677777654 22111122333 677788888877776 22222333333444444421 2233444 7
Q ss_pred cccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccE
Q 004747 249 MSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVL 328 (732)
Q Consensus 249 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~ 328 (732)
++|+.|++.+ .++...+.+|.++++|+++++++|.+....+..|..+.++..+....+... .
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~-------~---------- 162 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY-------R---------- 162 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH-------H----------
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh-------h----------
Confidence 8888888877 666666667777888888888877776555566666665555554432110 0
Q ss_pred EeCCCCcccCCCcccccCCCCCC-EEeccCccCCCcccccc----CCCCCCCEEEccCCcCccccCccccCCcCcceeec
Q 004747 329 LDLSHNRFSGEIPLKITELKSLQ-ALFLSNNLLIGEIPARI----GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV 403 (732)
Q Consensus 329 L~Ls~n~l~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~p~~l----~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 403 (732)
.....-...|..+..|+ .+.+.... .++..+ ....++..+.+.++-...........+++|+.+++
T Consensus 163 ------~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L 233 (329)
T 3sb4_A 163 ------FKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDI 233 (329)
T ss_dssp ------TSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEEC
T ss_pred ------ccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEEC
Confidence 00001111222233333 22222110 111111 11223334443332111100000112445555555
Q ss_pred ccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCC-EEEccCCcccccchhhhhcCCCCCEEEcccCCCcc
Q 004747 404 NNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLE-IVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482 (732)
Q Consensus 404 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 482 (732)
.+|+++......|.++++|+.+++.+| ++...+.+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+++++|++..
T Consensus 234 ~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 234 SKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp TTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 555555444455666666666666665 5544455666666666 666665 5554445666666666666666666665
Q ss_pred ccchhhhcCCCCCEEE
Q 004747 483 NLPNWLFSFQAIQMMD 498 (732)
Q Consensus 483 ~~p~~~~~~~~L~~L~ 498 (732)
.-+..|.++++|+.+.
T Consensus 312 I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECTTTTCTTCCCCEEE
T ss_pred cchhhhcCCcchhhhc
Confidence 5555666666666654
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=6.5e-16 Score=155.82 Aligned_cols=170 Identities=24% Similarity=0.345 Sum_probs=103.9
Q ss_pred cccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCc
Q 004747 247 SAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGL 326 (732)
Q Consensus 247 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L 326 (732)
.+.+++.++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..++ +|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~---~L 87 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLT---KL 87 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCS---SC
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCC---CC
Confidence 4455667777777776433 46777778888888777763 33 56677777777777777774332 44443 67
Q ss_pred cEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccc
Q 004747 327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN 406 (732)
Q Consensus 327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 406 (732)
+.|++++|++++ +|.. .. ++|++|++++|.+++. + .+..+++|+.|++++|++++. + .
T Consensus 88 ~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~--------------- 145 (263)
T 1xeu_A 88 EELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-M--------------- 145 (263)
T ss_dssp CEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-G---------------
T ss_pred CEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-H---------------
Confidence 777777777764 3332 22 6777777777777643 2 466677777777777766532 2 2
Q ss_pred cccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccc
Q 004747 407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458 (732)
Q Consensus 407 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 458 (732)
+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++
T Consensus 146 ---------l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 146 ---------LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ---------GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ---------HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 34445555555555555543 345555555555555555553
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=4.5e-16 Score=162.83 Aligned_cols=221 Identities=14% Similarity=0.105 Sum_probs=109.9
Q ss_pred cccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCC----CCCcCccccccCcCC
Q 004747 224 YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH----LNYEISPRLVFFEKL 299 (732)
Q Consensus 224 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~----l~~~~~~~l~~l~~L 299 (732)
+.+|+.|+|.+ .++...+..|..|++|+.+++++|.+....+.+|..+.++.++....+. ........+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 33455555555 4444555667778888888888887776666677776666666554421 111223345555666
Q ss_pred c-EEEccCCCCCCCCchhhhhc-CCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEE
Q 004747 300 L-LLDLSFNDLSGPLPSKIAQT-TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVI 377 (732)
Q Consensus 300 ~-~L~Ls~n~l~~~~p~~~~~l-~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 377 (732)
+ .+.+... +.++..+... ....++..+.+.++-...........+++|+.+++++|+++...+..|.++++|+.+
T Consensus 179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 5 4444332 1233322211 111134444443331110000001124556666666655554334445555556666
Q ss_pred EccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCc-EEEcccCceeeeccccCCCCCCCCEEEccCCcc
Q 004747 378 DLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK-ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456 (732)
Q Consensus 378 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 456 (732)
++++| +....+ ..|.++++|+ .+++.+ .++...+.+|.+|++|+.+++++|++
T Consensus 256 ~l~~n-i~~I~~------------------------~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 256 KLPHN-LKTIGQ------------------------RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp ECCTT-CCEECT------------------------TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred ECCcc-cceehH------------------------HHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence 55554 333333 3445555555 555555 44434445555556666666555555
Q ss_pred cccchhhhhcCCCCCEEE
Q 004747 457 SGSLNDAITKWTNLKYFS 474 (732)
Q Consensus 457 ~~~~~~~~~~l~~L~~L~ 474 (732)
+...+..|.++++|+.++
T Consensus 310 ~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 310 TTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEECTTTTCTTCCCCEEE
T ss_pred CccchhhhcCCcchhhhc
Confidence 544455555555555554
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=9.4e-15 Score=139.82 Aligned_cols=129 Identities=26% Similarity=0.335 Sum_probs=66.3
Q ss_pred cEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCcccc-ccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747 327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPA-RIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (732)
Q Consensus 327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (732)
+.+++++|+++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+.++++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45556666554 44543332 556666666665544332 255556666666666665554454444444444444444
Q ss_pred ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccc
Q 004747 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458 (732)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 458 (732)
|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 44444444444445555555555555555555555555555555555555543
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=6.5e-15 Score=137.75 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=33.1
Q ss_pred ccCCCCCcEEEcccCceeeec-cccCCCCCCCCEEEccCCcccccch---hhhhcCCCCCEEEcccCCCc
Q 004747 416 LDALDSLKILDISNNQISGEI-PLTLAGLKSLEIVDFSSNNLSGSLN---DAITKWTNLKYFSIARNKLS 481 (732)
Q Consensus 416 ~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~ 481 (732)
+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 334455555555555555321 1345555555555555555554333 24455555555555555544
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.8e-14 Score=134.65 Aligned_cols=132 Identities=25% Similarity=0.169 Sum_probs=89.6
Q ss_pred cccCeeeCCCCccc-cccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCcc
Q 004747 249 MSLTVLKLDNNSVV-GGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLV 327 (732)
Q Consensus 249 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~ 327 (732)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..++ +|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP---NLT 98 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT---TCC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC---CCC
Confidence 56777777777766 55666667777777777777777654 5666777777777777777765666655555 677
Q ss_pred EEeCCCCcccCCC-cccccCCCCCCEEeccCccCCCccc---cccCCCCCCCEEEccCCcCc
Q 004747 328 LLDLSHNRFSGEI-PLKITELKSLQALFLSNNLLIGEIP---ARIGNLTYLQVIDLSHNMLS 385 (732)
Q Consensus 328 ~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~ 385 (732)
+|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777777776421 2566677777777777777775444 35677777777777777665
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=3e-14 Score=134.44 Aligned_cols=135 Identities=24% Similarity=0.250 Sum_probs=105.3
Q ss_pred CCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCcc
Q 004747 70 TNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA 149 (732)
Q Consensus 70 c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 149 (732)
|.|.++.|. ++++. .+|..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..+..
T Consensus 7 C~~~~l~~~------------~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (177)
T 2o6r_A 7 CSGTEIRCN------------SKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV 71 (177)
T ss_dssp EETTEEECC------------SSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred eCCCEEEec------------CCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH
Confidence 567777764 33343 233333 368999999999999777777899999999999999999877777
Q ss_pred ccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccc
Q 004747 150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH 221 (732)
Q Consensus 150 ~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 221 (732)
|..+++|++|++++| .+++..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 72 ~~~l~~L~~L~l~~N-~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 72 FDKLTKLTILYLHEN-KLQSLPNGVFDKL-TQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCCCccCEEECCCC-CccccCHHHhhCC-cccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 889999999999999 5666666666777 789999999998886655567788888888888888776443
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=9.3e-15 Score=133.68 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=16.2
Q ss_pred CCCEEeccCccCC-CccccccCCCCCCCEEEccCCcCc
Q 004747 349 SLQALFLSNNLLI-GEIPARIGNLTYLQVIDLSHNMLS 385 (732)
Q Consensus 349 ~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~ 385 (732)
+|+.|++++|.++ +.+|..+..+++|++|++++|.++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 55 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT 55 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC
Confidence 3444444444444 334444444444444444444443
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=8e-15 Score=134.10 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=112.6
Q ss_pred CCCCCCEEEccCCcCc-cccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCE
Q 004747 370 NLTYLQVIDLSHNMLS-GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI 448 (732)
Q Consensus 370 ~l~~L~~L~Ls~n~l~-~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 448 (732)
..++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3467999999999998 78888888999999999999999877 67888999999999999999778887878999999
Q ss_pred EEccCCccccc-chhhhhcCCCCCEEEcccCCCccccc---hhhhcCCCCCEEEccC
Q 004747 449 VDFSSNNLSGS-LNDAITKWTNLKYFSIARNKLSGNLP---NWLFSFQAIQMMDFST 501 (732)
Q Consensus 449 L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~~~~L~~L~ls~ 501 (732)
|++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999874 34778899999999999999987655 5788899999998864
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=9.2e-14 Score=132.87 Aligned_cols=102 Identities=28% Similarity=0.430 Sum_probs=47.7
Q ss_pred cEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccc
Q 004747 327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN 406 (732)
Q Consensus 327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 406 (732)
+.+++++|.++ .+|..+. ++|++|++++|.++ .+|..+.++++|++|++++|.+++..+..|.++++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45566666665 4444332 35556666666555 44455555555555555555555444433433333333333333
Q ss_pred cccccCcccccCCCCCcEEEcccCce
Q 004747 407 NLSGEIQPELDALDSLKILDISNNQI 432 (732)
Q Consensus 407 ~l~~~~~~~~~~l~~L~~L~L~~n~l 432 (732)
.+++..+..|..+++|+.|+|++|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDI 114 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCC
Confidence 33333333333333333333333333
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.1e-13 Score=132.27 Aligned_cols=128 Identities=23% Similarity=0.278 Sum_probs=87.1
Q ss_pred CEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccC
Q 004747 351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN 430 (732)
Q Consensus 351 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 430 (732)
+.+++++|.++ .+|..+. ++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46677777666 4554432 46777777777776 55666677777777777777777666666777777777777777
Q ss_pred ceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCcc
Q 004747 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482 (732)
Q Consensus 431 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 482 (732)
++++..+..|.++++|++|++++|+++...+..|..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7776666667777777777777777775555566667777777777777653
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=1.6e-13 Score=129.34 Aligned_cols=130 Identities=22% Similarity=0.164 Sum_probs=61.8
Q ss_pred ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (732)
Q Consensus 326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (732)
.+.+++++++++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345556666555 344332 24566666666666654444555666666666666665543333333333333333333
Q ss_pred ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccc
Q 004747 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458 (732)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 458 (732)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 33333333333444444444444444443333333444444444444444443
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.50 E-value=1.4e-12 Score=139.83 Aligned_cols=329 Identities=12% Similarity=0.043 Sum_probs=160.8
Q ss_pred ccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcc
Q 004747 100 PRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFS 179 (732)
Q Consensus 100 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~ 179 (732)
.+|.++++|+.+.+.. .++.+-..+|.++++|+.+++..+ ++.+...+|.++++|+.+.+..+ +...-...+...
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~- 139 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGC- 139 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTC-
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeecc-
Confidence 4677888888888874 366555667888888888888654 55555677888888887776654 111222222222
Q ss_pred cCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCC
Q 004747 180 MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNN 259 (732)
Q Consensus 180 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n 259 (732)
.+....... ........+|.++++|+.+.+..+.. ......|..+.+|+.+++..+
T Consensus 140 -~~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~----------------------~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 140 -DFKEITIPE-GVTVIGDEAFATCESLEYVSLPDSME----------------------TLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp -CCSEEECCT-TCCEECTTTTTTCTTCCEEECCTTCC----------------------EECTTTTTTCTTCCBCCCCTT
T ss_pred -cccccccCc-cccccchhhhcccCCCcEEecCCccc----------------------eeccccccCCCCceEEEcCCC
Confidence 222222211 12222334566666666666654321 122334555666666666544
Q ss_pred ccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCC
Q 004747 260 SVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339 (732)
Q Consensus 260 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~ 339 (732)
++.....+|.++..|+.+.+..+... +........+|+.+.+.... +..
T Consensus 196 -~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~----------------------------~~i 244 (394)
T 4fs7_A 196 -LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF----------------------------TEL 244 (394)
T ss_dssp -CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC----------------------------CEE
T ss_pred -ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc----------------------------eec
Confidence 33233344555555555554433221 11222223344444433221 101
Q ss_pred CcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCC
Q 004747 340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL 419 (732)
Q Consensus 340 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 419 (732)
-...+..+..++.+.+..+... .....|..+..++.+....+.+ ....+.++.+|+.+.+.++ +.......|.++
T Consensus 245 ~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c 319 (394)
T 4fs7_A 245 GKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESC 319 (394)
T ss_dssp CSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC
T ss_pred ccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCC
Confidence 1122333444444444333221 2222334444444444433321 1123344444444444332 322333345556
Q ss_pred CCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEE
Q 004747 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMM 497 (732)
Q Consensus 420 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L 497 (732)
.+|+.+++.++ ++..-..+|.+|++|+.+++..+ ++.....+|.+|.+|+.+++..+ +. .+...+.++++|+.+
T Consensus 320 ~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 320 TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 66666666543 44344456666666666666554 44344556666666666666544 21 233445556555543
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=2.3e-12 Score=137.66 Aligned_cols=242 Identities=8% Similarity=0.051 Sum_probs=143.7
Q ss_pred CCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcc
Q 004747 349 SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428 (732)
Q Consensus 349 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 428 (732)
+|+.+.+.++ ++......|.++ +|+.+.+.. .+...-+.+|.+|.+|+.+++.+|.++......|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4555555443 332222334442 455555553 34333444555555555555555555544444444 4667777776
Q ss_pred cCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcc--
Q 004747 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG-- 506 (732)
Q Consensus 429 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~-- 506 (732)
++ ++..-..+|.+|++|+.+++..+ ++.....+|.. .+|+.+.+ .+.++..-+..|.++++|+.+++.+|.+..
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 44 55455566777777777777654 44344555655 57777777 344554445667777777777777766531
Q ss_pred --cCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCccccccc
Q 004747 507 --FIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQ 584 (732)
Q Consensus 507 --~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 584 (732)
.++...|. .+.+|+.+++. +.++..-...+.+++
T Consensus 288 ~~~I~~~aF~-------------------------------------------~c~~L~~l~l~-~~i~~I~~~aF~~c~ 323 (401)
T 4fdw_A 288 EAMIHPYCLE-------------------------------------------GCPKLARFEIP-ESIRILGQGLLGGNR 323 (401)
T ss_dssp TCEECTTTTT-------------------------------------------TCTTCCEECCC-TTCCEECTTTTTTCC
T ss_pred ccEECHHHhh-------------------------------------------CCccCCeEEeC-CceEEEhhhhhcCCC
Confidence 13333322 26677777777 346534445566778
Q ss_pred CCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCC-CCCEEEcccCcce
Q 004747 585 GLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ-ELTLLNLSYNSFS 644 (732)
Q Consensus 585 ~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~ 644 (732)
+|+.++|..| ++..-+. +.++ +|+.+++++|.+....+..|..++ .++.+.+..+.+.
T Consensus 324 ~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 324 KVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 8888888655 5533334 6667 888888888888766677777774 6777777766543
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=7.4e-13 Score=141.44 Aligned_cols=248 Identities=11% Similarity=0.083 Sum_probs=165.1
Q ss_pred CchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcC
Q 004747 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT 321 (732)
Q Consensus 242 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 321 (732)
...|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .++......|.++++|+.++++.|.++. ++.......
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~-I~~~aF~~~ 203 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK-LPASTFVYA 203 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE-ECTTTTTTC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE-echhhEeec
Confidence 3445553 5777777655 544445556663 577777764 4554555667777777777777777763 333322233
Q ss_pred CCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCccee
Q 004747 322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLAL 401 (732)
Q Consensus 322 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 401 (732)
+|+.+.+..+ ++..-..+|..+++|+.+++..+ ++......|.+ .+|+.+++. +.++..-..+|.+|.+|+.+
T Consensus 204 ---~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 204 ---GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEV 276 (401)
T ss_dssp ---CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEE
T ss_pred ---ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEE
Confidence 7788888744 55455567788888888888764 44333445555 678888884 44554556777888888888
Q ss_pred eccccccc-----ccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcc
Q 004747 402 IVNNNNLS-----GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA 476 (732)
Q Consensus 402 ~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 476 (732)
.+.+|.+. ......|.++++|+.+++.+ .++..-..+|.+|++|+.+++..+ ++.....+|.++ +|+.+++.
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence 88777654 34455678888888888884 466566677888888888888654 655556778888 88888888
Q ss_pred cCCCccccchhhhcCC-CCCEEEccCCcC
Q 004747 477 RNKLSGNLPNWLFSFQ-AIQMMDFSTNKF 504 (732)
Q Consensus 477 ~N~l~~~~p~~~~~~~-~L~~L~ls~N~l 504 (732)
+|.+....+..+..++ +++.+.+..+.+
T Consensus 354 ~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 354 GTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCCCcccccccccCCCCCccEEEeCHHHH
Confidence 8877655555666663 567777665544
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=8.8e-13 Score=141.42 Aligned_cols=312 Identities=11% Similarity=0.034 Sum_probs=184.1
Q ss_pred ccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccC
Q 004747 122 ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY 201 (732)
Q Consensus 122 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~ 201 (732)
-..+|.++.+|+.+++.. .++.+...+|.+|++|+.+++..+ +.. .-..+|.
T Consensus 63 g~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~-------------------------I~~~aF~ 114 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKM-------------------------IGRCTFS 114 (394)
T ss_dssp CTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCE-------------------------ECTTTTT
T ss_pred HHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceE-------------------------ccchhhc
Confidence 345688888888888864 466566677888888888887654 111 1122344
Q ss_pred CCCCCCEEEeecccCCCcccccccc--ccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEE
Q 004747 202 YLKSLKHLDLEKNNLTGNVHDFYQS--LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279 (732)
Q Consensus 202 ~l~~L~~L~Ls~n~l~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 279 (732)
++.+|+.+.+..+ +.......|.. +....... .........|..+++|+.+.+.++. ......+|.++.+|+.++
T Consensus 115 ~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~ 191 (394)
T 4fs7_A 115 GCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPE-GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIK 191 (394)
T ss_dssp TCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCC
T ss_pred ccccchhhcccCc-eeeecceeeecccccccccCc-cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEE
Confidence 4444444433322 11111111111 11111000 0011112334445555555554332 112233344444444444
Q ss_pred eccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCcc
Q 004747 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359 (732)
Q Consensus 280 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 359 (732)
+..+ ++...... +..+. .|+.+.+..+... +........+|+.+.+....
T Consensus 192 l~~~-~~~I~~~~------------------------F~~~~---~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~ 241 (394)
T 4fs7_A 192 LPRN-LKIIRDYC------------------------FAECI---LLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF 241 (394)
T ss_dssp CCTT-CCEECTTT------------------------TTTCT---TCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC
T ss_pred cCCC-ceEeCchh------------------------hcccc---ccceeecCCCceE--eehhhcccCCCceEEECCCc
Confidence 4332 21111122 22222 4554544443322 22233445678888776543
Q ss_pred CCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeecccc
Q 004747 360 LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT 439 (732)
Q Consensus 360 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 439 (732)
+......+..+..++.+.+..+... .....+..+..++.+....+.+. ...+..+.+|+.+.+.++ ++..-..+
T Consensus 242 -~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 242 -TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEA 315 (394)
T ss_dssp -CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred -eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhh
Confidence 3233456788999999999877544 55667888889988887765433 345778999999999875 66566678
Q ss_pred CCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCC
Q 004747 440 LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502 (732)
Q Consensus 440 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N 502 (732)
|.+|++|+.+++.++ ++.....+|.+|.+|+.+++..+ ++..-..+|.+|++|+.+++..+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 999999999999754 66566788999999999999877 66455678999999999999765
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=3e-13 Score=126.38 Aligned_cols=90 Identities=26% Similarity=0.242 Sum_probs=81.7
Q ss_pred cccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEE
Q 004747 559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN 637 (732)
Q Consensus 559 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 637 (732)
...+++|+|++|++++..|..+.++++|++|+|++|+|++..+. +..+++|++|+|++|+|++..|..|..+++|++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 35678899999999988888999999999999999999977776 68999999999999999988888899999999999
Q ss_pred cccCcceeeCC
Q 004747 638 LSYNSFSGFVP 648 (732)
Q Consensus 638 ls~N~l~g~ip 648 (732)
+++|++.+..+
T Consensus 109 L~~N~~~c~c~ 119 (170)
T 3g39_A 109 LLNNPWDCACS 119 (170)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCCCCCch
Confidence 99999987654
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=2.5e-15 Score=144.76 Aligned_cols=149 Identities=22% Similarity=0.310 Sum_probs=81.2
Q ss_pred CccEEeCCCCcccCCCcc------cccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCc
Q 004747 325 GLVLLDLSHNRFSGEIPL------KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398 (732)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L 398 (732)
.++.++++.+.+++.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|.
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-------- 87 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-------- 87 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS--------
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc--------
Confidence 455555665655555443 45555555555555555553 33 4455555555555555544 3333
Q ss_pred ceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccch-hhhhcCCCCCEEEccc
Q 004747 399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIAR 477 (732)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~ 477 (732)
.+..+++|+.|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 88 ----------------~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 88 ----------------LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp ----------------HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred ----------------hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 33444556666666666553 33 35555666666666666654322 3455666666666666
Q ss_pred CCCccccch----------hhhcCCCCCEEEccCCcC
Q 004747 478 NKLSGNLPN----------WLFSFQAIQMMDFSTNKF 504 (732)
Q Consensus 478 N~l~~~~p~----------~~~~~~~L~~L~ls~N~l 504 (732)
|++.+.+|. .+..+++|+.|| +|.+
T Consensus 150 N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 150 NPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp CHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 666555443 256677777765 4444
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=3.6e-13 Score=126.81 Aligned_cols=132 Identities=23% Similarity=0.306 Sum_probs=80.9
Q ss_pred ccCCCCCCEEeccCccCCCccccccCCC-CCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCC
Q 004747 344 ITELKSLQALFLSNNLLIGEIPARIGNL-TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSL 422 (732)
Q Consensus 344 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 422 (732)
+..+++|+.|++++|.++. +|. +..+ ++|++|++++|.+++ . ..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~------------------------~--~~l~~l~~L 66 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRK------------------------L--DGFPLLRRL 66 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCE------------------------E--CCCCCCSSC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCc------------------------c--cccccCCCC
Confidence 3445566666666666652 333 2332 256666666655553 2 235566677
Q ss_pred cEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchh--hhhcCCCCCEEEcccCCCccccchh----hhcCCCCCE
Q 004747 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND--AITKWTNLKYFSIARNKLSGNLPNW----LFSFQAIQM 496 (732)
Q Consensus 423 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~----~~~~~~L~~ 496 (732)
++|++++|.+++..+..+..+++|++|++++|+++. +|. .+..+++|++|++++|++. .+|.. +..+++|+.
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 777777777765444444667777777777777753 443 5667777777777777776 44543 677777777
Q ss_pred EEccCCcCc
Q 004747 497 MDFSTNKFM 505 (732)
Q Consensus 497 L~ls~N~l~ 505 (732)
||+++|...
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 777777654
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=3.1e-13 Score=127.28 Aligned_cols=130 Identities=22% Similarity=0.165 Sum_probs=90.3
Q ss_pred CCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceee
Q 004747 323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALI 402 (732)
Q Consensus 323 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 402 (732)
..+|+.|++++|.++ .+|......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~---------- 84 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLD---------- 84 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHH----------
T ss_pred cCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchh----------
Confidence 348999999999999 4565433345999999999999864 578899999999999999885433333
Q ss_pred cccccccccCcccccCCCCCcEEEcccCceeeeccc--cCCCCCCCCEEEccCCcccccchh----hhhcCCCCCEEEcc
Q 004747 403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIPL--TLAGLKSLEIVDFSSNNLSGSLND----AITKWTNLKYFSIA 476 (732)
Q Consensus 403 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~ 476 (732)
..+++|++|++++|.++ .+|. .+..+++|++|++++|.++. +|. .+..+++|++|+++
T Consensus 85 --------------~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 85 --------------QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp --------------HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTE
T ss_pred --------------hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCC
Confidence 34555666666666554 3333 45566666666666666653 333 36667777777777
Q ss_pred cCCCc
Q 004747 477 RNKLS 481 (732)
Q Consensus 477 ~N~l~ 481 (732)
+|...
T Consensus 149 ~n~~~ 153 (176)
T 1a9n_A 149 KVKLK 153 (176)
T ss_dssp ECCHH
T ss_pred cCCHH
Confidence 77654
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=8e-13 Score=123.94 Aligned_cols=90 Identities=24% Similarity=0.245 Sum_probs=80.6
Q ss_pred cccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEE
Q 004747 559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN 637 (732)
Q Consensus 559 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 637 (732)
.+.|+.|+|++|++++..|..+.++++|++|+|++|+|++..+. +.++++|++|||++|+|++..+..|..+++|++|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 35678999999999988888999999999999999999976666 68899999999999999987777799999999999
Q ss_pred cccCcceeeCC
Q 004747 638 LSYNSFSGFVP 648 (732)
Q Consensus 638 ls~N~l~g~ip 648 (732)
+++|++....+
T Consensus 112 L~~N~~~c~~~ 122 (174)
T 2r9u_A 112 LYNNPWDCECR 122 (174)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCcccccc
Confidence 99999986543
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=1.4e-14 Score=139.50 Aligned_cols=135 Identities=27% Similarity=0.307 Sum_probs=81.4
Q ss_pred cccccCeeeCCCCccccccch------hhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhc
Q 004747 247 SAMSLTVLKLDNNSVVGGIPT------CIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQT 320 (732)
Q Consensus 247 ~~~~L~~L~Ls~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 320 (732)
....++.++++.+.+.+.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 344555556666655555554 56666666666666666664 44 5666666666666666665 455544444
Q ss_pred CCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccc-cccCCCCCCCEEEccCCcCccccC
Q 004747 321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP-ARIGNLTYLQVIDLSHNMLSGSIP 389 (732)
Q Consensus 321 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p 389 (732)
+ +|++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|
T Consensus 93 ~---~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 93 D---TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp H---HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred C---cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 4 56666666666663 34 45566667777777776664222 356666777777777776665444
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=8e-12 Score=116.68 Aligned_cols=105 Identities=25% Similarity=0.258 Sum_probs=58.9
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCC
Q 004747 86 SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165 (732)
Q Consensus 86 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 165 (732)
.++++++.++. +|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|
T Consensus 13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L--------- 80 (170)
T 3g39_A 13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL--------- 80 (170)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC---------
T ss_pred EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC---------
Confidence 34455555542 343332 556666666666665555556666666666666666665544444555444
Q ss_pred CCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCc
Q 004747 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN 219 (732)
Q Consensus 166 ~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 219 (732)
++|+|++|.+++..+..|.++++|++|+|++|.++..
T Consensus 81 -----------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 81 -----------------TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp -----------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred -----------------CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 4455555555544444566677777777777766543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.5e-11 Score=115.27 Aligned_cols=104 Identities=25% Similarity=0.222 Sum_probs=60.4
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCC
Q 004747 86 SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165 (732)
Q Consensus 86 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 165 (732)
.++++++.+. .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~--- 89 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN--- 89 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC---
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC---
Confidence 4566666663 4444443 566666666666666556666666666666666666665444444555555555554
Q ss_pred CCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCC
Q 004747 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG 218 (732)
Q Consensus 166 ~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 218 (732)
+|.+++..+..|..+++|++|+|++|.+..
T Consensus 90 -----------------------~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 -----------------------DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp -----------------------SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred -----------------------CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 445554434446666777777777666653
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=2.6e-13 Score=143.48 Aligned_cols=66 Identities=26% Similarity=0.257 Sum_probs=32.3
Q ss_pred hcccccCeeeCCCCccccc----cchhhhccCCCCEEEeccCCCCCc----CccccccCcCCcEEEccCCCCCC
Q 004747 246 ASAMSLTVLKLDNNSVVGG----IPTCIASLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLSG 311 (732)
Q Consensus 246 ~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~ 311 (732)
..+++|++|+|++|.+.+. ++..+...++|++|+|++|.++.. ++..+...++|++|+|++|.++.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 3445555555555555432 123334445555566555555432 22233344555666666655553
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.27 E-value=5.6e-10 Score=119.53 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=58.3
Q ss_pred cccCCC-CCCEEECCCCCCCCcccccccCCCCCCEEECCCCC---CCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhh
Q 004747 101 RLCKLS-FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNK---FVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVG 176 (732)
Q Consensus 101 ~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~ 176 (732)
+|.++. .|+.+.+..+ ++.+-..+|.++++|+.+.++.|. ++.+...+|.++.+|+.+.+..+ +...-...+.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhh
Confidence 455553 4777877643 554556678888888888877653 44445566777777777666544 1111122222
Q ss_pred hcccCCcEEEeeCcccccccCcccCCCCCCCEEEee
Q 004747 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLE 212 (732)
Q Consensus 177 ~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 212 (732)
.. .+|+.+.+..+ +.......|.++.+|+.+.+.
T Consensus 135 ~c-~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 135 HC-EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred hh-cccccccccce-eeeecccceeccccccccccc
Confidence 33 45555555432 222333344455555555444
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.22 E-value=5.7e-10 Score=119.45 Aligned_cols=332 Identities=12% Similarity=0.122 Sum_probs=157.9
Q ss_pred cccccCCC-CCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCC--CCCCcCCchhhhcccCCcEEEeeCcccccccCcc
Q 004747 123 STCFGGLS-GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP--ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPES 199 (732)
Q Consensus 123 ~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~--~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~ 199 (732)
..+|.+++ .|+.+.+.. .++.+...+|.+|++|+.+.+..|. .+...-...+... .+|+.+.+..+ ++......
T Consensus 56 ~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c-~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFC-SELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTC-TTCCBCGGGTT-CSEECTTT
T ss_pred HhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhc-ccceeeccCCc-cceehhhh
Confidence 45677774 599999965 4776777889999999999887761 1111112223333 45555544332 33233344
Q ss_pred cCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEE
Q 004747 200 LYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279 (732)
Q Consensus 200 l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 279 (732)
|.++.+|+.+.+..+. .......+..+..|+.+.+..+ +...-..+|.. ..|+.+.
T Consensus 133 F~~c~~L~~i~lp~~~----------------------~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ 188 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGV----------------------TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIH 188 (394)
T ss_dssp TTTCTTCCEEECCTTC----------------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred hhhhccccccccccee----------------------eeecccceecccccccccccce-eeEeccccccc-cceeEEE
Confidence 5556666666554321 1122334455555666555443 22222233332 3456665
Q ss_pred eccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCcc
Q 004747 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359 (732)
Q Consensus 280 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 359 (732)
+..+- .......+..+.+++......+.... ....+........... ..+.....+..+.+.+ .
T Consensus 189 ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ip~-~ 252 (394)
T 4gt6_A 189 IPAKV-TRIGTNAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYAL-------------IRYPSQREDPAFKIPN-G 252 (394)
T ss_dssp ECTTC-CEECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEE-------------EECCTTCCCSEEECCT-T
T ss_pred ECCcc-cccccchhhhccccceeccccccccc-ccceeecccccccccc-------------cccccccccceEEcCC-c
Confidence 54332 11223344455555555444333220 0000000000000000 0011112222222221 1
Q ss_pred CCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeecccc
Q 004747 360 LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT 439 (732)
Q Consensus 360 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 439 (732)
++..-...|.++..|+.+.+.++... .....|.++..|+.+.+. +.+.......|.++.+|+.+++..+ ++..-..+
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred ceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence 11122234555556666655444322 333445555566655553 2333334445667777777777654 44444566
Q ss_pred CCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcC
Q 004747 440 LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504 (732)
Q Consensus 440 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l 504 (732)
|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+++.++... -..+..+.+|+.+.+..+.+
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 777777777777543 55455567777777777777776533 13455666777776655543
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=3.2e-12 Score=135.16 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=81.2
Q ss_pred CccEEeCCCCcccCCCccccc-----CCCCCCEEeccCccCCCcccccc-CCCCCCCEEEccCCcCccccCccccCCcCc
Q 004747 325 GLVLLDLSHNRFSGEIPLKIT-----ELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398 (732)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L 398 (732)
.|+.|++++|.++......+. ..++|++|+|++|.++......+ ..+++|+.|+|++|.++......+..
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~---- 148 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD---- 148 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH----
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH----
Confidence 567777777776633222221 12466666666666654322222 22345566666666654332222210
Q ss_pred ceeecccccccccCcccc-cCCCCCcEEEcccCceeee----ccccCCCCCCCCEEEccCCcccccc----hhhhhcCCC
Q 004747 399 LALIVNNNNLSGEIQPEL-DALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFSSNNLSGSL----NDAITKWTN 469 (732)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~ 469 (732)
.+ ...++|+.|+|++|.+++. ++..+..+++|++|+|++|.+++.. +..+...++
T Consensus 149 ----------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 149 ----------------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp ----------------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred ----------------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence 11 1234566666666655432 2223345556666666666655322 334445556
Q ss_pred CCEEEcccCCCccc----cchhhhcCCCCCEEEccCCcCc
Q 004747 470 LKYFSIARNKLSGN----LPNWLFSFQAIQMMDFSTNKFM 505 (732)
Q Consensus 470 L~~L~L~~N~l~~~----~p~~~~~~~~L~~L~ls~N~l~ 505 (732)
|++|+|++|.++.. ++..+...++|++||+++|.++
T Consensus 213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 66666666666532 2333445566666666666654
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=1.1e-10 Score=122.92 Aligned_cols=109 Identities=24% Similarity=0.253 Sum_probs=79.2
Q ss_pred CC--CCccceeecCCCCcEEEEEcCCC-CCcccccccccCCCCCCEEECCC-CCCCCcccccccCCCCCCEEECCCCCCC
Q 004747 68 NC--TNWTGVACNFQTGHVVSINLTDT-SLSGQVHPRLCKLSFLEFLVLSS-NAFTGRISTCFGGLSGLKTLDLSYNKFV 143 (732)
Q Consensus 68 ~~--c~w~gv~c~~~~~~v~~L~L~~~-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 143 (732)
.| |.|..|.|. ++ +++ .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|+|+
T Consensus 4 ~c~~C~~~~v~~~------------~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 69 (347)
T 2ifg_A 4 ACCPHGSSGLRCT------------RDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69 (347)
T ss_dssp SSCCSSSSCEECC------------SSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC
T ss_pred cCccccCCEEEcC------------CCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc
Confidence 46 778777774 23 455 3677 88899999999996 9998877788999999999999999999
Q ss_pred CCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccc
Q 004747 144 GVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFC 193 (732)
Q Consensus 144 ~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~ 193 (732)
+..|..|.++++|++|+|++| .+++..+..+..+ .|++|+|.+|.+.
T Consensus 70 ~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~--~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 70 FVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGL--SLQELVLSGNPLH 116 (347)
T ss_dssp EECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSC--CCCEEECCSSCCC
T ss_pred eeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccC--CceEEEeeCCCcc
Confidence 888888888888888888888 3443333333322 2555555555444
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=1e-10 Score=123.01 Aligned_cols=89 Identities=21% Similarity=0.101 Sum_probs=62.4
Q ss_pred hhhcccceEEEccC-CcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCC
Q 004747 556 NYQLFSAVGMDLSD-NLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQEL 633 (732)
Q Consensus 556 ~~~l~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L 633 (732)
+..+.+|+.|+|++ |+|++..|..+.++++|+.|+|++|+|++.+|. +.++++|+.|||++|+|++..|..|..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 34455677777775 777765656677777777777777777776666 66777777777777777766666666555 7
Q ss_pred CEEEcccCccee
Q 004747 634 TLLNLSYNSFSG 645 (732)
Q Consensus 634 ~~L~ls~N~l~g 645 (732)
+.|++++|++..
T Consensus 106 ~~l~l~~N~~~c 117 (347)
T 2ifg_A 106 QELVLSGNPLHC 117 (347)
T ss_dssp CEEECCSSCCCC
T ss_pred eEEEeeCCCccC
Confidence 777777777764
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.86 E-value=3.1e-07 Score=97.57 Aligned_cols=108 Identities=13% Similarity=0.109 Sum_probs=50.0
Q ss_pred cccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCC
Q 004747 391 NIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNL 470 (732)
Q Consensus 391 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 470 (732)
.+.++..|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|.+|++|+.+++.++.++......|.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3444444444444332 22222334444555555555432 332333445555555555555555544444455555555
Q ss_pred CEEEcccCCCccccchhhhcCCCCCEEEccC
Q 004747 471 KYFSIARNKLSGNLPNWLFSFQAIQMMDFST 501 (732)
Q Consensus 471 ~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~ 501 (732)
+.+.+..+ ++..-..+|.+|++|+.+.+..
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 55555433 3322234455555555555543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=2.1e-09 Score=112.56 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=31.4
Q ss_pred ccccCeeeCCCCccccccchhhh---ccCCCCEEEeccCCCCCc----CccccccCcCCcEEEccCCCCCC
Q 004747 248 AMSLTVLKLDNNSVVGGIPTCIA---SLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLSG 311 (732)
Q Consensus 248 ~~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~ 311 (732)
+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 34555555555554432222222 245566666665555432 22233345566666666665553
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.76 E-value=6.8e-07 Score=94.85 Aligned_cols=316 Identities=10% Similarity=0.041 Sum_probs=158.4
Q ss_pred cccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCC
Q 004747 125 CFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLK 204 (732)
Q Consensus 125 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~ 204 (732)
++....+|+.+.+.. .++.+...+|.+|.+|+.++|..+ +...-...+.+ .+|+.+.+..+ ++.....+|.+ .
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~--c~l~~i~~~~~-l~~I~~~aF~~-~ 113 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFAD--TKLQSYTGMER-VKKFGDYVFQG-T 113 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTT--CCCCEEEECTT-CCEECTTTTTT-C
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcC--CCCceEECCce-eeEeccceecc-C
Confidence 455667888888853 456566678888889998888765 22222223333 25666665433 33222333443 3
Q ss_pred CCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCC
Q 004747 205 SLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH 284 (732)
Q Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 284 (732)
+|+.+.+..+- .. .....+.++ +++.+.+..+ ++......+..+..++.+.+..+.
T Consensus 114 ~L~~i~lp~~~-~~---------------------i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~ 169 (379)
T 4h09_A 114 DLDDFEFPGAT-TE---------------------IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNN 169 (379)
T ss_dssp CCSEEECCTTC-CE---------------------ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTC
T ss_pred CcccccCCCcc-cc---------------------ccccccccc-eeeeeeccce-eeccccchhccccccccccccccc
Confidence 56666665431 11 111112221 2333333221 121223334445555555544332
Q ss_pred CCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCcc
Q 004747 285 LNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEI 364 (732)
Q Consensus 285 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 364 (732)
.......... ..... .....+.... .+..+.+....-. .....+..+..|+.+.+..+ +....
T Consensus 170 ~~~~~~~~~~-~~~~~-----------~~~~~~~~~~---~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~ 232 (379)
T 4h09_A 170 KNYVAENYVL-YNKNK-----------TILESYPAAK---TGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLG 232 (379)
T ss_dssp SSEEEETTEE-EETTS-----------SEEEECCTTC---CCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEEC
T ss_pred ceeeccccee-ccccc-----------ceeccccccc---cccccccccceeE-Eeecccccccccceeeeccc-eeEEc
Confidence 2111000000 00000 0000011111 2333333322211 22334455566666666443 22233
Q ss_pred ccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCC
Q 004747 365 PARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLK 444 (732)
Q Consensus 365 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 444 (732)
...+.++..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++..-..+|.+|.
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 344566667777776554 44344455666667777666433 3334445677788888888887777756667788888
Q ss_pred CCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCC
Q 004747 445 SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ 492 (732)
Q Consensus 445 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 492 (732)
+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++..-..+|.++.
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 8888888654 55445567788888888877654 4423344455543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=2.4e-08 Score=104.53 Aligned_cols=84 Identities=24% Similarity=0.275 Sum_probs=54.2
Q ss_pred CCCCCcEEEcccCceeeeccccC---CCCCCCCEEEccCCcccccc----hhhhhcCCCCCEEEcccCCCccccchhhhc
Q 004747 418 ALDSLKILDISNNQISGEIPLTL---AGLKSLEIVDFSSNNLSGSL----NDAITKWTNLKYFSIARNKLSGNLPNWLFS 490 (732)
Q Consensus 418 ~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 490 (732)
.+++|+.|++.+|.+.+..+..+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 46788888888887765433222 24678888888888887643 333355788888888888776443333332
Q ss_pred -CCCCCEEEccCCc
Q 004747 491 -FQAIQMMDFSTNK 503 (732)
Q Consensus 491 -~~~L~~L~ls~N~ 503 (732)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3557777765
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.57 E-value=2.1e-09 Score=106.67 Aligned_cols=80 Identities=28% Similarity=0.328 Sum_probs=46.6
Q ss_pred cCCCCCCEEECCCCCCCC--CCCccccCCCCCCEEeCCCCCCCCCcCCchhhhccc--CCcEEEeeCcccccccCc----
Q 004747 127 GGLSGLKTLDLSYNKFVG--VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM--NLEKLDFSFNSFCGEIPE---- 198 (732)
Q Consensus 127 ~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~--~L~~L~Ls~n~l~~~~p~---- 198 (732)
.++++|++|+|++|+|++ .+|..+..+++|++|+|++|. +.+. ..+..+ . +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~--~~l~~l-~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE--RELDKI-KGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG--GGGGGG-TTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc--hhhhhc-ccCCcceEEccCCcCccccCcchhH
Confidence 456777777777777776 334556667777777777773 3332 223333 3 566666666666654441
Q ss_pred ---ccCCCCCCCEEE
Q 004747 199 ---SLYYLKSLKHLD 210 (732)
Q Consensus 199 ---~l~~l~~L~~L~ 210 (732)
.+..+++|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 244556666554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=3.4e-07 Score=86.20 Aligned_cols=121 Identities=18% Similarity=0.155 Sum_probs=71.0
Q ss_pred ccccCCCCCCCEEEccCC-cCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeee----cccc
Q 004747 365 PARIGNLTYLQVIDLSHN-MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE----IPLT 439 (732)
Q Consensus 365 p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~ 439 (732)
...+...+.|++|+|++| .+....... +...+...++|++|+|++|.+.+. +...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~--------------------l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~ 88 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKA--------------------CAEALKTNTYVKKFSIVGTRSNDPVAFALAEM 88 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHH--------------------HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHH--------------------HHHHHHhCCCcCEEECcCCCCChHHHHHHHHH
Confidence 345566777888888777 665321111 112234455666666666666532 2233
Q ss_pred CCCCCCCCEEEccCCccccc----chhhhhcCCCCCEEEc--ccCCCccc----cchhhhcCCCCCEEEccCCcCc
Q 004747 440 LAGLKSLEIVDFSSNNLSGS----LNDAITKWTNLKYFSI--ARNKLSGN----LPNWLFSFQAIQMMDFSTNKFM 505 (732)
Q Consensus 440 ~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L--~~N~l~~~----~p~~~~~~~~L~~L~ls~N~l~ 505 (732)
+...++|++|+|++|.+++. +...+...++|++|+| ++|.+... +...+...++|+.|++++|.+.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34456677777777777643 2344555667777777 66777533 3344556677788888777764
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=2.6e-07 Score=87.07 Aligned_cols=122 Identities=18% Similarity=0.193 Sum_probs=82.9
Q ss_pred CcccccCCCCCCEEeccCc-cCCCc----cccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcc
Q 004747 340 IPLKITELKSLQALFLSNN-LLIGE----IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP 414 (732)
Q Consensus 340 ~p~~l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~ 414 (732)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+.......+ ..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l--------------------~~ 87 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL--------------------AE 87 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH--------------------HH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH--------------------HH
Confidence 3445677899999999999 88643 44556778899999999998864322111 12
Q ss_pred cccCCCCCcEEEcccCceeee----ccccCCCCCCCCEEEc--cCCcccccc----hhhhhcCCCCCEEEcccCCCc
Q 004747 415 ELDALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDF--SSNNLSGSL----NDAITKWTNLKYFSIARNKLS 481 (732)
Q Consensus 415 ~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~ 481 (732)
.+...++|++|+|++|.+.+. +...+...++|++|+| ++|.+++.. ...+...++|++|++++|.+.
T Consensus 88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 233445677777777777643 3445666677888888 778877532 344455678888888888775
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=2.9e-07 Score=91.15 Aligned_cols=64 Identities=28% Similarity=0.318 Sum_probs=30.3
Q ss_pred ccCCceeeccccccee--cCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCC--CCCEEEcccCcceeeCC
Q 004747 583 LQGLEYLNLSFNFLDG--QVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ--ELTLLNLSYNSFSGFVP 648 (732)
Q Consensus 583 l~~L~~L~Ls~N~l~~--~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~--~L~~L~ls~N~l~g~ip 648 (732)
+++|+.|+|++|+|++ .+|. +..+++|+.|||++|+|++. ..+..+. .|++|++++|++++.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 4455555555555554 2233 33455555555555555543 1122222 55555555555555444
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=2.2e-06 Score=78.67 Aligned_cols=85 Identities=11% Similarity=0.057 Sum_probs=48.8
Q ss_pred CCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhc---ccCCcEEEeeCcc-cccccCcccCCCCCC
Q 004747 131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNF---SMNLEKLDFSFNS-FCGEIPESLYYLKSL 206 (732)
Q Consensus 131 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l---~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L 206 (732)
+|++||++++.++..--..+..+++|++|+|++|..++..--..+... +++|++|++++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 455555555555544334455566666666666643333222223321 1357778887774 665444556778888
Q ss_pred CEEEeeccc
Q 004747 207 KHLDLEKNN 215 (732)
Q Consensus 207 ~~L~Ls~n~ 215 (732)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 888888874
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=1.2e-05 Score=73.79 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=14.0
Q ss_pred CCCEEEcccCC-CccccchhhhcCCCCCEEEccCC
Q 004747 469 NLKYFSIARNK-LSGNLPNWLFSFQAIQMMDFSTN 502 (732)
Q Consensus 469 ~L~~L~L~~N~-l~~~~p~~~~~~~~L~~L~ls~N 502 (732)
+|++|+|++|. ++..--..+..+++|+.|+++++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 34444444442 33222223334444444444444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.67 E-value=0.0011 Score=61.82 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=15.1
Q ss_pred CCCcEEEcccCceeee----ccccCCCCCCCCEEEccC
Q 004747 420 DSLKILDISNNQISGE----IPLTLAGLKSLEIVDFSS 453 (732)
Q Consensus 420 ~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~ 453 (732)
+.|+.|+|++|.|.+. +...+..-+.|++|+|++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 4455555555554432 112233334455555543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.63 E-value=0.0019 Score=56.29 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=24.5
Q ss_pred CCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcce
Q 004747 608 SLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644 (732)
Q Consensus 608 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 644 (732)
+|+.|||++|+|+...+..|..+++|++|+|++|++.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4666666666666555556666677777777777664
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.62 E-value=0.0014 Score=61.04 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=65.6
Q ss_pred ccccCCCCCcEEEcccCceeeecc----ccCCCCCCCCEEEccCCcccccch----hhhhcCCCCCEEEcccC---CCcc
Q 004747 414 PELDALDSLKILDISNNQISGEIP----LTLAGLKSLEIVDFSSNNLSGSLN----DAITKWTNLKYFSIARN---KLSG 482 (732)
Q Consensus 414 ~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N---~l~~ 482 (732)
..+..-+.|+.|+|++|.+.+.-. ..+..-+.|+.|+|++|.|.+... ..+..-+.|++|+|++| .+..
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence 345566789999999999875433 334455889999999999985433 34455577999999875 3332
Q ss_pred ----ccchhhhcCCCCCEEEccCCcC
Q 004747 483 ----NLPNWLFSFQAIQMMDFSTNKF 504 (732)
Q Consensus 483 ----~~p~~~~~~~~L~~L~ls~N~l 504 (732)
.+...+..-+.|+.|+++.|.+
T Consensus 144 ~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 144 QVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2455677788999999987765
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.20 E-value=0.01 Score=51.55 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=33.3
Q ss_pred EEECCCCCCC-CcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCC
Q 004747 110 FLVLSSNAFT-GRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165 (732)
Q Consensus 110 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 165 (732)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3444444443 23343221 357777777777776666677777777777777774
No 165
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=60.38 E-value=3 Score=27.69 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=5.1
Q ss_pred Hhhhhhhhhcccc
Q 004747 711 YLGVVALFCSART 723 (732)
Q Consensus 711 ~~~~~~~~~~~~~ 723 (732)
+++..++++++|+
T Consensus 25 ii~~~~~~~~RRR 37 (44)
T 2l2t_A 25 IVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3333334443333
No 166
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=48.62 E-value=5.3 Score=26.50 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=8.9
Q ss_pred ehhhhhHHHhhhhhhhhcccc
Q 004747 703 CLSFFVSFYLGVVALFCSART 723 (732)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~ 723 (732)
++|+.+.++++.+++++.+|+
T Consensus 18 vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhheehh
Confidence 455443344444444443333
No 167
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=44.13 E-value=7.6 Score=25.82 Aligned_cols=13 Identities=8% Similarity=-0.044 Sum_probs=5.0
Q ss_pred Hhhhhhhhhcccc
Q 004747 711 YLGVVALFCSART 723 (732)
Q Consensus 711 ~~~~~~~~~~~~~ 723 (732)
+++..++++.+|+
T Consensus 26 ii~~~~~~~~RRr 38 (44)
T 2ks1_B 26 VVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3333334433333
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.83 E-value=38 Score=27.09 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=25.9
Q ss_pred CCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCC
Q 004747 118 FTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164 (732)
Q Consensus 118 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 164 (732)
++.+-..+|.++.+|+.+.+-.+ ++.+-..+|.+|.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33334455666666666666433 44444556666666666666543
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=30.55 E-value=17 Score=23.32 Aligned_cols=9 Identities=0% Similarity=0.113 Sum_probs=3.6
Q ss_pred ehhhhhHHH
Q 004747 703 CLSFFVSFY 711 (732)
Q Consensus 703 ~~~~~~~~~ 711 (732)
++|.+++++
T Consensus 17 VvG~v~gv~ 25 (38)
T 2k1k_A 17 IFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHH
T ss_pred ehHHHHHHH
Confidence 344444433
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.32 E-value=45 Score=26.62 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=15.1
Q ss_pred cCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcc
Q 004747 439 TLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA 476 (732)
Q Consensus 439 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 476 (732)
.|.+|.+|+.+.+-.+ ++..-...|.+|.+|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3444444444444322 222223344444444444443
No 171
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=22.52 E-value=24 Score=22.07 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=9.9
Q ss_pred ehhhhhHHHhhhhhhhhcccc
Q 004747 703 CLSFFVSFYLGVVALFCSART 723 (732)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~ 723 (732)
++|+.+.++++..+.++.+|+
T Consensus 14 Vvglll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 14 VVGVLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHHTTTTTHHHHHC
T ss_pred HHHHHHHHHHHHHhheEEeec
Confidence 344444444555555554444
Done!