BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004748
(732 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AW3|A Chain A, Structure Of The Mixed-Function P450 Mycg F286v Mutant In
Complex With Mycinamicin V In P1 Space Group
pdb|4AW3|B Chain B, Structure Of The Mixed-Function P450 Mycg F286v Mutant In
Complex With Mycinamicin V In P1 Space Group
Length = 417
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 662 PLDDLIPSLCKFRKLA------ELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFA 715
P DDL+ +L + R ELLD+ + + A +ES T ++I DF+ +
Sbjct: 221 PTDDLVSALVQARDQQDSLSEQELLDLAIGLLVAGYES--------TTTQIADFVYLLMT 272
Query: 716 DSTLRKECLWRIENVP 731
LR++ L R E +P
Sbjct: 273 RPELRRQLLDRPELIP 288
>pdb|3ZSN|A Chain A, Structure Of The Mixed-Function P450 Mycg F286a Mutant In
Complex With Mycinamicin Iv
pdb|3ZSN|B Chain B, Structure Of The Mixed-Function P450 Mycg F286a Mutant In
Complex With Mycinamicin Iv
pdb|3ZSN|C Chain C, Structure Of The Mixed-Function P450 Mycg F286a Mutant In
Complex With Mycinamicin Iv
Length = 417
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 662 PLDDLIPSLCKFRKLA------ELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFA 715
P DDL+ +L + R ELLD+ + + A +ES T ++I DF+ +
Sbjct: 221 PTDDLVSALVQARDQQDSLSEQELLDLAIGLLVAGYES--------TTTQIADFVYLLMT 272
Query: 716 DSTLRKECLWRIENVP 731
LR++ L R E +P
Sbjct: 273 RPELRRQLLDRPELIP 288
>pdb|2Y46|A Chain A, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin Iv In C 2 2 21 Space Group
pdb|2Y46|B Chain B, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin Iv In C 2 2 21 Space Group
pdb|2Y46|C Chain C, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin Iv In C 2 2 21 Space Group
pdb|2Y5N|A Chain A, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin V In P21 Space Group
pdb|2Y5N|B Chain B, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin V In P21 Space Group
pdb|2Y5Z|A Chain A, Mixed-Function P450 Mycg In Complex With Mycinamicin Iii
In C2221 Space Group
pdb|2Y5Z|B Chain B, Mixed-Function P450 Mycg In Complex With Mycinamicin Iii
In C2221 Space Group
pdb|2Y5Z|C Chain C, Mixed-Function P450 Mycg In Complex With Mycinamicin Iii
In C2221 Space Group
pdb|2Y98|A Chain A, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin Iv In P21212 Space Group
pdb|2YGX|A Chain A, Structure Of The Mixed-Function P450 Mycg In P21 Space
Group
pdb|2YGX|B Chain B, Structure Of The Mixed-Function P450 Mycg In P21 Space
Group
pdb|2YGX|C Chain C, Structure Of The Mixed-Function P450 Mycg In P21 Space
Group
pdb|2YGX|D Chain D, Structure Of The Mixed-Function P450 Mycg In P21 Space
Group
pdb|2YCA|A Chain A, Mixed-Function P450 Mycg In Complex With Mycinamicin Iii
In P21212 Space Group
Length = 417
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 662 PLDDLIPSLCKFRKLA------ELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFA 715
P DDL+ +L + R ELLD+ + + A +ES T ++I DF+ +
Sbjct: 221 PTDDLVSALVQARDQQDSLSEQELLDLAIGLLVAGYES--------TTTQIADFVYLLMT 272
Query: 716 DSTLRKECLWRIENVP 731
LR++ L R E +P
Sbjct: 273 RPELRRQLLDRPELIP 288
>pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1)
pdb|4HZK|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 2)
pdb|4HZK|B Chain B, Crystal Structure Of Free Crm1 (crystal Form 2)
Length = 1086
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 23/86 (26%)
Query: 58 QDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKEL 117
Q +A+ L ++ V+R EI+T + + GL + +KKE+
Sbjct: 725 QMYAATSQLISEAVARDGEIATKMPKVRGLRT-----------------------IKKEI 761
Query: 118 LELVRAIVEIGERLKGVKEALRDGRL 143
L+LV VE E L+ V+ + G L
Sbjct: 762 LKLVETFVEKAEDLQAVRSQMIPGLL 787
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,610,548
Number of Sequences: 62578
Number of extensions: 771223
Number of successful extensions: 2064
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2064
Number of HSP's gapped (non-prelim): 16
length of query: 732
length of database: 14,973,337
effective HSP length: 106
effective length of query: 626
effective length of database: 8,340,069
effective search space: 5220883194
effective search space used: 5220883194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)