Query 004748
Match_columns 732
No_of_seqs 164 out of 216
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 12:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2163 Centromere/kinetochore 100.0 8E-102 2E-106 841.7 54.4 667 1-728 2-719 (719)
2 PF06248 Zw10: Centromere/kine 100.0 3.3E-91 7.2E-96 811.4 57.3 538 21-566 2-592 (593)
3 PF11989 Dsl1_C: Retrograde tr 100.0 2.5E-33 5.4E-38 294.1 23.6 258 421-729 22-284 (291)
4 PF10475 DUF2450: Protein of u 98.3 9.9E-05 2.1E-09 79.4 22.4 199 26-230 28-232 (291)
5 PF04100 Vps53_N: Vps53-like, 97.2 0.28 6.1E-06 55.0 28.6 282 29-343 21-323 (383)
6 PF10191 COG7: Golgi complex c 96.9 0.45 9.7E-06 58.1 28.0 183 30-214 35-223 (766)
7 PF04124 Dor1: Dor1-like famil 96.6 0.17 3.6E-06 55.8 19.7 156 25-182 6-161 (338)
8 KOG3691 Exocyst complex subuni 96.3 0.11 2.4E-06 61.7 16.4 144 7-160 32-175 (982)
9 PF10392 COG5: Golgi transport 96.3 0.12 2.6E-06 49.1 14.0 112 11-128 15-126 (132)
10 KOG2307 Low density lipoprotei 96.3 3.1 6.6E-05 47.8 30.7 283 28-347 45-353 (705)
11 KOG2180 Late Golgi protein sor 96.2 0.76 1.6E-05 54.0 21.8 284 29-346 36-340 (793)
12 KOG0412 Golgi transport comple 96.1 4.2 9.1E-05 48.1 47.3 195 492-709 555-764 (773)
13 PF04437 RINT1_TIP1: RINT-1 / 96.1 1.8 4E-05 50.1 25.4 346 291-684 66-449 (494)
14 PF04048 Sec8_exocyst: Sec8 ex 95.8 0.15 3.3E-06 49.0 12.2 104 30-135 37-140 (142)
15 KOG2163 Centromere/kinetochore 95.6 0.58 1.2E-05 54.0 17.5 328 30-384 31-414 (719)
16 PF06046 Sec6: Exocyst complex 95.3 4.6 9.9E-05 47.6 25.1 232 423-680 243-495 (566)
17 PF06148 COG2: COG (conserved 95.3 0.0063 1.4E-07 57.8 1.0 104 30-135 27-130 (133)
18 KOG2176 Exocyst complex, subun 93.7 21 0.00045 43.1 47.7 123 30-161 45-175 (800)
19 KOG2069 Golgi transport comple 93.2 20 0.00044 41.6 23.9 124 29-154 34-157 (581)
20 KOG2115 Vacuolar sorting prote 93.1 2.4 5.2E-05 51.2 15.9 122 36-159 246-367 (951)
21 PF15469 Sec5: Exocyst complex 90.1 8.7 0.00019 38.3 14.3 111 48-160 3-119 (182)
22 PF08700 Vps51: Vps51/Vps67; 89.5 1.8 3.9E-05 37.5 7.8 62 28-89 21-82 (87)
23 PF06160 EzrA: Septation ring 84.7 23 0.00049 41.9 15.7 124 59-182 95-229 (560)
24 PF04912 Dynamitin: Dynamitin 82.8 45 0.00097 37.5 16.5 113 27-140 88-227 (388)
25 KOG4182 Uncharacterized conser 81.5 55 0.0012 37.4 15.8 142 35-182 44-192 (828)
26 KOG1853 LIS1-interacting prote 80.6 33 0.00073 35.9 12.8 94 30-125 56-170 (333)
27 KOG0994 Extracellular matrix g 74.1 18 0.00038 45.2 10.0 139 9-160 1479-1631(1758)
28 COG4477 EzrA Negative regulato 73.3 29 0.00063 40.1 11.1 123 60-182 99-243 (570)
29 KOG2211 Predicted Golgi transp 73.1 1.6E+02 0.0034 35.3 16.9 125 30-161 72-203 (797)
30 KOG2911 Uncharacterized conser 72.9 32 0.0007 38.7 11.1 112 30-141 244-363 (439)
31 PRK04778 septation ring format 70.2 83 0.0018 37.3 14.7 120 59-178 99-229 (569)
32 PHA02562 46 endonuclease subun 69.2 1.9E+02 0.0041 33.8 17.4 61 59-121 221-281 (562)
33 PF08317 Spc7: Spc7 kinetochor 68.7 75 0.0016 34.8 13.0 7 129-135 258-264 (325)
34 PRK02224 chromosome segregatio 68.4 87 0.0019 39.0 15.1 41 120-160 625-665 (880)
35 PF10474 DUF2451: Protein of u 67.6 1.6E+02 0.0035 30.7 17.8 119 587-728 114-233 (234)
36 COG1392 Phosphate transport re 65.0 1.1E+02 0.0024 31.7 12.5 59 27-85 43-107 (217)
37 TIGR03185 DNA_S_dndD DNA sulfu 63.9 1E+02 0.0022 37.2 13.9 51 65-115 391-441 (650)
38 PF04740 LXG: LXG domain of WX 63.1 1.7E+02 0.0037 29.3 14.4 61 30-90 28-89 (204)
39 KOG1854 Mitochondrial inner me 62.9 3.3E+02 0.0071 32.6 25.5 149 10-160 295-460 (657)
40 PF06160 EzrA: Septation ring 62.8 73 0.0016 37.7 12.2 90 69-160 198-290 (560)
41 PF10186 Atg14: UV radiation r 62.8 1.5E+02 0.0032 31.5 13.7 56 30-88 24-79 (302)
42 PF06419 COG6: Conserved oligo 62.7 3.4E+02 0.0073 32.6 21.8 124 58-184 38-175 (618)
43 PF03357 Snf7: Snf7; InterPro 62.0 62 0.0013 31.3 9.8 113 29-160 11-123 (171)
44 PF06008 Laminin_I: Laminin Do 58.3 2.5E+02 0.0054 29.7 15.7 109 30-138 49-169 (264)
45 PF07798 DUF1640: Protein of u 57.4 1.2E+02 0.0025 30.3 10.9 52 26-80 44-95 (177)
46 PRK10884 SH3 domain-containing 57.2 83 0.0018 32.3 9.9 25 29-53 89-113 (206)
47 PF10805 DUF2730: Protein of u 57.0 87 0.0019 28.6 9.1 57 65-121 35-91 (106)
48 PF12240 Angiomotin_C: Angiomo 56.5 2.1E+02 0.0046 29.3 12.3 95 26-123 57-164 (205)
49 KOG1961 Vacuolar sorting prote 56.2 1.9E+02 0.0041 34.2 13.3 106 6-134 34-139 (683)
50 COG1579 Zn-ribbon protein, pos 55.7 2.1E+02 0.0046 30.1 12.7 60 31-90 15-77 (239)
51 PF10498 IFT57: Intra-flagella 54.5 1.7E+02 0.0038 32.6 12.6 15 28-42 193-207 (359)
52 PF10498 IFT57: Intra-flagella 53.3 92 0.002 34.8 10.2 95 28-141 215-320 (359)
53 KOG0996 Structural maintenance 52.8 2.5E+02 0.0053 35.9 14.3 123 30-160 862-996 (1293)
54 PRK01156 chromosome segregatio 50.3 2.5E+02 0.0055 35.1 14.7 16 144-159 732-747 (895)
55 smart00787 Spc7 Spc7 kinetocho 49.9 1.6E+02 0.0034 32.3 11.2 59 80-140 205-264 (312)
56 PRK03918 chromosome segregatio 49.6 3.2E+02 0.007 33.9 15.5 8 174-181 746-753 (880)
57 KOG0994 Extracellular matrix g 48.7 3.3E+02 0.0071 34.9 14.2 126 29-156 1418-1554(1758)
58 TIGR03185 DNA_S_dndD DNA sulfu 48.2 2.2E+02 0.0047 34.4 13.2 41 141-182 476-516 (650)
59 PF07889 DUF1664: Protein of u 48.2 1.4E+02 0.0029 28.4 9.0 14 72-85 68-81 (126)
60 PF09763 Sec3_C: Exocyst compl 46.9 5.5E+02 0.012 31.3 16.5 58 30-87 2-59 (701)
61 PRK09039 hypothetical protein; 46.8 3.5E+02 0.0077 29.9 13.6 15 35-49 48-62 (343)
62 KOG0972 Huntingtin interacting 46.3 2.3E+02 0.005 30.6 11.1 38 27-64 221-261 (384)
63 PF04124 Dor1: Dor1-like famil 46.2 3E+02 0.0066 30.2 13.0 25 486-510 293-317 (338)
64 PF11902 DUF3422: Protein of u 46.1 1.4E+02 0.003 34.1 10.3 158 63-229 207-387 (420)
65 KOG2346 Uncharacterized conser 45.9 1.2E+02 0.0025 35.1 9.5 174 38-213 58-235 (636)
66 PF06008 Laminin_I: Laminin Do 45.7 3.9E+02 0.0084 28.2 14.4 24 25-48 119-142 (264)
67 KOG2211 Predicted Golgi transp 45.1 2.7E+02 0.0058 33.5 12.4 43 581-624 581-623 (797)
68 COG3524 KpsE Capsule polysacch 44.3 2.3E+02 0.0049 30.9 10.8 89 64-156 222-317 (372)
69 PF09731 Mitofilin: Mitochondr 44.1 6.1E+02 0.013 30.0 25.7 92 264-374 466-567 (582)
70 TIGR00606 rad50 rad50. This fa 43.4 5.2E+02 0.011 34.1 16.4 83 72-158 1028-1111(1311)
71 KOG3647 Predicted coiled-coil 43.3 4.1E+02 0.0089 28.4 12.3 110 13-125 31-163 (338)
72 KOG4360 Uncharacterized coiled 42.4 6.2E+02 0.013 29.6 15.1 134 28-164 161-305 (596)
73 PTZ00464 SNF-7-like protein; P 42.2 4.1E+02 0.0088 27.4 12.9 26 29-55 14-39 (211)
74 PF14966 DNA_repr_REX1B: DNA r 41.9 2.6E+02 0.0057 25.1 9.6 79 42-120 11-95 (97)
75 PF12777 MT: Microtubule-bindi 41.2 2.4E+02 0.0052 31.2 11.2 104 62-171 5-108 (344)
76 KOG2347 Sec5 subunit of exocys 41.0 2.4E+02 0.0052 34.8 11.5 135 25-161 183-322 (934)
77 COG3883 Uncharacterized protei 40.8 2.7E+02 0.0058 29.8 10.8 45 68-114 48-92 (265)
78 PF04849 HAP1_N: HAP1 N-termin 40.1 5.3E+02 0.012 28.2 14.7 130 28-160 162-302 (306)
79 PF07439 DUF1515: Protein of u 40.0 2.1E+02 0.0046 26.3 8.4 60 31-90 6-65 (112)
80 PF08112 ATP-synt_E_2: ATP syn 39.6 1.3E+02 0.0027 24.0 6.0 37 27-63 5-41 (56)
81 PF04048 Sec8_exocyst: Sec8 ex 39.5 3.5E+02 0.0075 25.9 13.2 100 28-133 42-141 (142)
82 PF14276 DUF4363: Domain of un 38.7 2.6E+02 0.0056 25.7 9.4 87 72-162 23-112 (121)
83 KOG4674 Uncharacterized conser 38.5 3.9E+02 0.0085 36.0 13.7 93 29-123 801-893 (1822)
84 PF00038 Filament: Intermediat 38.5 5.3E+02 0.011 27.6 14.7 83 28-112 164-247 (312)
85 PRK11637 AmiB activator; Provi 37.5 6.1E+02 0.013 28.8 14.1 24 28-51 42-65 (428)
86 TIGR00996 Mtu_fam_mce virulenc 37.2 5.3E+02 0.012 27.3 13.1 10 30-39 131-140 (291)
87 KOG2273 Membrane coat complex 36.5 5.8E+02 0.013 29.6 14.0 121 30-159 278-398 (503)
88 PF04156 IncA: IncA protein; 36.4 4.4E+02 0.0095 26.1 12.7 21 30-50 85-105 (191)
89 PF12252 SidE: Dot/Icm substra 35.8 8.6E+02 0.019 31.1 15.0 111 29-152 938-1054(1439)
90 PRK04863 mukB cell division pr 34.9 7.4E+02 0.016 33.2 15.6 83 72-158 348-431 (1486)
91 KOG0996 Structural maintenance 34.7 3.4E+02 0.0073 34.8 11.7 126 21-152 472-611 (1293)
92 COG0216 PrfA Protein chain rel 34.0 4E+02 0.0087 29.5 10.9 68 70-141 5-72 (363)
93 PF05082 Rop-like: Rop-like; 33.9 2.9E+02 0.0062 23.3 8.2 42 29-70 5-46 (66)
94 TIGR01010 BexC_CtrB_KpsE polys 33.8 3E+02 0.0065 30.4 10.7 81 30-113 174-260 (362)
95 TIGR00606 rad50 rad50. This fa 33.7 8.3E+02 0.018 32.2 16.0 55 106-160 1012-1066(1311)
96 PF10157 DUF2365: Uncharacteri 32.7 4.8E+02 0.01 25.5 13.1 24 33-56 52-75 (149)
97 PRK03918 chromosome segregatio 32.7 5.4E+02 0.012 32.0 13.7 9 30-38 589-597 (880)
98 PF07544 Med9: RNA polymerase 32.4 2E+02 0.0044 25.0 7.1 57 66-122 22-79 (83)
99 PF07106 TBPIP: Tat binding pr 32.2 2.4E+02 0.0051 27.7 8.5 65 24-90 70-134 (169)
100 PF07989 Microtub_assoc: Micro 31.6 2.1E+02 0.0045 24.6 6.8 28 30-58 4-31 (75)
101 PHA02562 46 endonuclease subun 30.9 5.8E+02 0.013 29.8 12.9 96 32-137 298-394 (562)
102 PF06705 SF-assemblin: SF-asse 29.1 6.8E+02 0.015 26.1 15.5 35 31-65 97-131 (247)
103 PLN03188 kinesin-12 family pro 29.0 1.2E+03 0.027 30.4 15.3 101 60-160 1116-1237(1320)
104 PF01865 PhoU_div: Protein of 28.8 5.5E+02 0.012 25.8 10.9 55 28-82 42-102 (214)
105 PRK13658 hypothetical protein; 27.7 1.4E+02 0.0031 23.9 4.7 35 124-158 6-40 (59)
106 PF12325 TMF_TATA_bd: TATA ele 27.5 5.2E+02 0.011 24.2 10.3 105 62-182 13-117 (120)
107 PF05531 NPV_P10: Nucleopolyhe 26.7 2.6E+02 0.0057 24.1 6.5 24 65-88 11-34 (75)
108 KOG0796 Spliceosome subunit [R 26.4 6E+02 0.013 27.9 10.7 87 57-157 75-161 (319)
109 PLN03094 Substrate binding sub 26.4 7.7E+02 0.017 27.7 12.0 20 26-45 227-246 (370)
110 PLN02372 violaxanthin de-epoxi 26.3 6.7E+02 0.014 28.6 11.2 23 20-50 356-378 (455)
111 COG1579 Zn-ribbon protein, pos 25.9 8E+02 0.017 25.9 12.2 14 74-87 91-104 (239)
112 PF07888 CALCOCO1: Calcium bin 25.8 1.2E+03 0.025 27.7 14.4 10 355-364 442-451 (546)
113 PF07373 CAMP_factor: CAMP fac 25.6 7.9E+02 0.017 25.7 16.3 56 19-74 5-61 (228)
114 PF05701 WEMBL: Weak chloropla 25.2 5.8E+02 0.013 30.0 11.4 41 70-112 279-319 (522)
115 PF00261 Tropomyosin: Tropomyo 24.9 7.9E+02 0.017 25.5 11.6 48 69-118 33-80 (237)
116 PTZ00446 vacuolar sorting prot 24.7 7.5E+02 0.016 25.1 12.8 29 21-49 21-50 (191)
117 COG1722 XseB Exonuclease VII s 24.6 3.3E+02 0.0071 23.8 6.9 53 325-385 11-63 (81)
118 KOG2033 Low density lipoprotei 24.6 1.3E+03 0.029 28.1 23.3 165 27-209 18-209 (863)
119 COG3096 MukB Uncharacterized p 24.5 9.1E+02 0.02 29.7 12.3 100 52-160 325-433 (1480)
120 TIGR03017 EpsF chain length de 23.9 1.1E+03 0.023 26.7 13.1 78 32-112 214-299 (444)
121 COG1340 Uncharacterized archae 23.8 9.6E+02 0.021 26.1 14.1 13 31-43 136-148 (294)
122 PF07464 ApoLp-III: Apolipopho 23.8 5.6E+02 0.012 25.1 9.2 84 30-114 31-118 (155)
123 PRK01156 chromosome segregatio 23.8 7E+02 0.015 31.2 12.5 45 97-141 704-748 (895)
124 PF12718 Tropomyosin_1: Tropom 23.6 6.7E+02 0.014 24.1 11.9 103 26-132 7-111 (143)
125 PF07111 HCR: Alpha helical co 23.6 1.4E+03 0.03 27.9 14.3 98 18-118 464-572 (739)
126 PF12128 DUF3584: Protein of u 23.6 1.7E+03 0.038 29.0 16.4 125 21-151 218-352 (1201)
127 PF12128 DUF3584: Protein of u 23.2 1.2E+03 0.026 30.4 14.7 79 30-111 310-389 (1201)
128 PF11988 Dsl1_N: Retrograde tr 23.2 1.1E+03 0.023 26.4 13.8 221 109-343 39-312 (354)
129 PF12805 FUSC-like: FUSC-like 23.1 9.2E+02 0.02 25.6 15.8 73 21-93 124-207 (284)
130 PF06698 DUF1192: Protein of u 23.1 1.7E+02 0.0036 24.1 4.5 33 20-52 15-47 (59)
131 PRK11637 AmiB activator; Provi 23.1 6.2E+02 0.013 28.7 10.9 44 68-113 43-86 (428)
132 PRK15178 Vi polysaccharide exp 23.1 9.1E+02 0.02 27.8 12.0 121 33-156 249-380 (434)
133 COG2433 Uncharacterized conser 23.0 7.5E+02 0.016 29.6 11.3 21 30-50 426-446 (652)
134 PF14906 DUF4495: Domain of un 22.9 1E+03 0.022 26.1 12.5 66 548-613 93-160 (321)
135 COG5665 NOT5 CCR4-NOT transcri 22.9 5.2E+02 0.011 29.0 9.4 39 8-47 15-53 (548)
136 PTZ00464 SNF-7-like protein; P 22.8 8.5E+02 0.018 25.1 12.3 27 26-52 18-44 (211)
137 COG1196 Smc Chromosome segrega 22.6 1.4E+03 0.031 29.7 15.1 130 28-159 353-485 (1163)
138 PRK10929 putative mechanosensi 22.5 1.3E+03 0.029 29.9 14.4 133 23-158 99-251 (1109)
139 KOG1029 Endocytic adaptor prot 22.5 1.5E+03 0.033 28.0 14.9 95 46-140 415-525 (1118)
140 TIGR02169 SMC_prok_A chromosom 22.5 1.7E+03 0.036 28.4 16.0 27 317-343 972-998 (1164)
141 PF04728 LPP: Lipoprotein leuc 22.4 2E+02 0.0044 23.4 4.7 16 73-88 4-19 (56)
142 COG3352 FlaC Putative archaeal 22.3 5.4E+02 0.012 25.2 8.4 56 47-104 43-109 (157)
143 TIGR03017 EpsF chain length de 22.3 5.8E+02 0.013 28.8 10.6 115 34-155 255-370 (444)
144 KOG3060 Uncharacterized conser 22.2 8.9E+02 0.019 26.0 10.7 46 109-154 125-181 (289)
145 PRK15178 Vi polysaccharide exp 22.1 8.3E+02 0.018 28.1 11.4 35 28-62 214-248 (434)
146 PF05377 FlaC_arch: Flagella a 22.0 2.6E+02 0.0057 22.7 5.3 13 76-88 4-16 (55)
147 PF02403 Seryl_tRNA_N: Seryl-t 21.9 5.8E+02 0.012 22.8 8.6 57 55-117 33-89 (108)
148 PRK10807 paraquat-inducible pr 21.9 5.4E+02 0.012 30.5 10.3 18 75-92 416-433 (547)
149 PF07889 DUF1664: Protein of u 21.9 6.9E+02 0.015 23.7 9.7 26 64-89 42-67 (126)
150 KOG0250 DNA repair protein RAD 21.6 1.8E+03 0.039 28.4 16.7 8 378-385 607-614 (1074)
151 PF07426 Dynactin_p22: Dynacti 21.5 5.5E+02 0.012 25.6 8.8 19 33-51 5-23 (174)
152 KOG0250 DNA repair protein RAD 21.4 1.8E+03 0.039 28.4 15.3 88 72-160 372-462 (1074)
153 PRK10929 putative mechanosensi 21.3 1.2E+03 0.027 30.1 13.8 19 24-42 21-39 (1109)
154 COG4550 Predicted membrane pro 21.1 6.8E+02 0.015 23.4 9.5 63 99-161 22-84 (120)
155 PF05823 Gp-FAR-1: Nematode fa 21.1 1.5E+02 0.0032 29.0 4.6 39 453-491 105-143 (154)
156 COG5420 Uncharacterized conser 21.0 4.8E+02 0.01 21.7 6.6 40 29-68 9-48 (71)
157 PF04728 LPP: Lipoprotein leuc 21.0 2.5E+02 0.0055 22.8 5.0 17 71-87 9-25 (56)
158 TIGR03517 GldM_gliding gliding 20.7 6.5E+02 0.014 29.7 10.4 62 29-90 41-102 (523)
159 smart00503 SynN Syntaxin N-ter 20.6 6.1E+02 0.013 22.6 10.2 32 30-62 5-36 (117)
160 TIGR02302 aProt_lowcomp conser 20.2 6.7E+02 0.014 31.4 10.8 79 125-222 568-646 (851)
161 PRK10869 recombination and rep 20.2 9.1E+02 0.02 28.6 11.8 180 21-210 201-392 (553)
162 PF06785 UPF0242: Uncharacteri 20.1 1.2E+03 0.026 25.8 11.6 44 30-74 72-115 (401)
163 PF10212 TTKRSYEDQ: Predicted 20.1 1.4E+03 0.031 26.8 13.1 30 110-139 482-511 (518)
164 cd07664 BAR_SNX2 The Bin/Amphi 20.0 8.9E+02 0.019 25.3 10.4 108 47-160 7-121 (234)
165 PF04111 APG6: Autophagy prote 20.0 5.6E+02 0.012 28.0 9.3 52 31-87 7-58 (314)
No 1
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8e-102 Score=841.72 Aligned_cols=667 Identities=24% Similarity=0.348 Sum_probs=565.0
Q ss_pred CccccchhhHHHhhhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHH
Q 004748 1 MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKS-KVQSYIASHHQDFASLFSLCNDTVSRTDEIST 79 (732)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~~~k~-~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~ 79 (732)
+++||.+.|++..|-++|+.+|.+| +..|+.++++ +|++.|.+.|++|+|.+.+.....+++.++..
T Consensus 2 ~~~l~Es~n~~g~lekedl~~~it~------------ls~rv~r~~gnrv~shi~~~yskflp~~~s~~~di~E~~sL~r 69 (719)
T KOG2163|consen 2 IDALAESENSYGDLEKEDLKNGITS------------LSQRVVRKYGNRVVSHIVNAYSKFLPDRLSNLEDIAEMSSLTR 69 (719)
T ss_pred chHHHHHhccccchhhhhhcCCccc------------cchHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHhh
Confidence 4788889998887766555555555 5566777778 89999999999999999999999999999999
Q ss_pred hHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Q 004748 80 DLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRV 159 (732)
Q Consensus 80 ~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~ 159 (732)
+++++++.|++ ++...|+.+.++.+..+++++ ..+-.+++.+++..+....+.....+.+.++++.|+++.+.++.
T Consensus 70 di~~l~~~i~s-dv~d~L~e~~~~~~d~e~qle---v~l~~l~~~qev~~~~E~~ncve~~kai~~~lq~l~ea~kll~~ 145 (719)
T KOG2163|consen 70 DISNLIDQIAS-DVPDMLAEIKSQAQDCENQLE---VQLMKLVEEQEVIMRSETTNCVEWGKAILACLQFLNEANKLLEG 145 (719)
T ss_pred hHHHHHHHhhh-hhHHHHHHhhcchhhhhhHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 788899999999999999998 33335688889999999999999999999999999999999988
Q ss_pred CCCCCch----------------hHHHHHHHHHHHHHhhhe-----------------ee---cC--CCCCcHHHHHHHH
Q 004748 160 GDENASE----------------PLVYGLLRKEWLVCFEEL-----------------TV---DG--LDGIELRTVLEAM 201 (732)
Q Consensus 160 ~~~~~~~----------------~~i~~~L~~~W~~lv~~~-----------------tv---~~--~~~~~L~~vl~AL 201 (732)
.+..+-. +.-|+ +...|.....|. ++ +. .....++.+..|+
T Consensus 146 ~grd~fd~~~lk~l~~vlrI~k~ne~ye-l~a~~~~~~~w~~~~s~qe~ldr~~q~~~~~f~~ss~ve~q~~l~~t~sa~ 224 (719)
T KOG2163|consen 146 IGRDGFDMSVLKHLAAVLRILKYNERYE-LSADYERAMNWPKLSSIQECLDRTNQVSFSVFNVSSRVEDQKMLNETLSAM 224 (719)
T ss_pred cCcccccHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHhcccCccHHHHHHHHHHhheeeeeccchhhhhhcCChHHHHH
Confidence 7654421 12222 333444443322 11 10 1123455555555
Q ss_pred HHhCcchHHHHHH-HHHHHHHhhhhhhcCCCCcccccccCCCCcccccceeeeeccCCccccCCChhhHHHHHHHHHHHH
Q 004748 202 EVVGILDYGLAKV-ADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFI 280 (732)
Q Consensus 202 ~~lg~L~~~l~~l-~~~L~~~ii~P~i~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~~~k~~~~~~~~v~~~l~~v~~FL 280 (732)
-+++.+.+.++.+ +..|+++++.|+.+.|.....+++ + .+...+++...-.. .++.++|.++..|++-+
T Consensus 225 ia~s~l~E~~~~~k~~~Lldyclapvasrp~~hvyie~---~---p~~~~~Rf~~~~~~----~s~a~~f~~v~~VlEsl 294 (719)
T KOG2163|consen 225 IAISQLPERLDAWKIVILLDYCLAPVASRPGVHVYIED---N---PTPDQTRFLINQKP----RSKADKFIDVAKVLESL 294 (719)
T ss_pred HHHHHhHHHhhhHHHHHHHHHhHHHhccCccceeeecc---C---CCcceeeeeecccc----CchHhhhhHHHHHHHHh
Confidence 5555555544443 578999999999999976544443 1 12245555432111 36778899999998888
Q ss_pred HHhccc---------CCCchHHHhhhhhhHHHHHHHHHhhcccCCCCChhhhhhHHHHHHHHHHHHHHHHHcccccCCCc
Q 004748 281 HKRICL---------QNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDN 351 (732)
Q Consensus 281 ~~~L~~---------~~~~l~~~lg~~i~p~ls~~lI~~~L~~aIP~~~~~l~~F~~vi~~~~~Fe~~L~~lgf~~~~~~ 351 (732)
.-.|+. .+..+.+++|+.||..++++|+++||.++||.+.+++.+|+.+|+.+.+||..|+++.|++..+.
T Consensus 295 ~l~Lh~l~~~e~evt~~~~~~emigDhi~e~l~~~l~k~cl~~avP~~stkl~d~e~iie~t~qfE~aLkem~f~~~~dq 374 (719)
T KOG2163|consen 295 ELKLHVLHSHELEVTTGKTFTEMIGDHIEEQLITMLLKDCLAIAVPVTSTKLEDQEMIIELTQQFEVALKEMKFLGFFDQ 374 (719)
T ss_pred hhcccccccchhhhcccchHHHHHhHHHHHHHHHHHHHhhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 855541 34679999999999999999999999999999999999999999999999999999988776654
Q ss_pred cchhHhHHHHhHHHHHHHhhhHHHHHHHHHhhhhcCCCCCCCCCCCCCCcccCCCCCCCCcccccccccccceeecccHH
Q 004748 352 KDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAAS 431 (732)
Q Consensus 352 ~~~~L~~~v~~v~~~f~~krr~~~L~~AR~ll~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~c~IS~~~~ 431 (732)
.+.|.+|++++++||++|||.++|++||+||.++-.+.+.+.+ ....+++...+|.+|+|+||+++.
T Consensus 375 -~~allkfaed~ethfanRkc~~il~kARnLi~~~~~~~v~vip------------ntha~hvanl~FsfprC~vSeSa~ 441 (719)
T KOG2163|consen 375 -KSALLKFAEDTETHFANRKCFAILSKARNLINETYDKLVTVIP------------NTHAEHVANLYFSFPRCTVSESAI 441 (719)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceecc------------cccHHHHhhhhccCcceeecHHHH
Confidence 4599999999999999999999999999999975444443321 123445667789999999999999
Q ss_pred HHHHHHHHHHHHhhhhc-hHhHHHHHHhHHHHHHHHHhhhhhhhHHhhccccchhhhhhhchHHHHHHHhhchhhhccCC
Q 004748 432 QLMKLVHQILQDICLSS-TRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDF 510 (732)
Q Consensus 432 ~l~~Li~~~L~ea~~ss-~~~a~~L~~~~~~i~~LyravvP~~h~~~l~~~p~~a~l~yNDc~YLa~~L~~l~~~~~~~l 510 (732)
.+|+|++++|.+++.++ +++|.+||+++|+|+.||.++||++|++.|+|+||+|++|||||||++|+..+.++
T Consensus 442 ~fvnL~~~tL~~at~ss~dq~a~~la~~arni~hly~~vVP~khrell~siPq~AaifhNNCmyi~h~~~~h~f------ 515 (719)
T KOG2163|consen 442 NFVNLLRDTLKAATASSDDQAAAKLALTARNIVHLYVIVVPRKHRELLSSIPQMAAIFHNNCMYISHCIMTHSF------ 515 (719)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchHHHHHhcccHHHHHHHHhhhc------
Confidence 99999999999999887 89999999999999999999999999999999999999999999999997776554
Q ss_pred CcchhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhhhHHHHHHHHHHHHHHHHhhcccCC
Q 004748 511 PSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLL 590 (732)
Q Consensus 511 ~~~~~~~~~Fvd~~~~~r~~a~~~~~~qi~~~~~~L~~~L~~a~gf~~~~~~~~~e~~~~ai~q~~~~L~~l~~~W~~vL 590 (732)
.+..+|+|++|+||.+|++||++|+.+|+++|+++|++++||.++++...+++|.++|+||++||+.|+++|++||
T Consensus 516 ----~g~~~ladlaprlr~~a~ecf~kQv~~q~seL~e~l~sa~~Fen~~~ee~~ssa~klVrQcL~qLkll~~vw~~vL 591 (719)
T KOG2163|consen 516 ----LGEPLLADLAPRLRTVAAECFEKQVTRQRSELTEYLESASIFENLPAEEMSSSADKLVRQCLLQLKLLAKVWREVL 591 (719)
T ss_pred ----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcHHhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence 3467899999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhHhhhhhhHHhhcCCCCCCCCccchhhhchhH
Q 004748 591 LPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSL 670 (732)
Q Consensus 591 p~~vy~~~ig~Lv~~v~~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~LF~~~~~~~~~~~~~~~~~~~~~~~vp~W 670 (732)
|+.+||++||+|+|+++.++|.+|+.++|||++++.+|+.||+.+++.++++|.++.+ .+.+..+|++|
T Consensus 592 pe~vYck~mc~Llnt~~~elir~V~tl~Disa~da~eL~dLik~vL~~~p~vfa~~~e-----------~~et~v~v~~w 660 (719)
T KOG2163|consen 592 PEVVYCKVMCSLLNTLLDELIRHVVTLSDISANDANELADLIKRVLEVVPNVFAYKEE-----------TKETDVCVREW 660 (719)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhHHHHHHHHHHHHhhhhhhcChhh-----------ccCccccHHHh
Confidence 9999999999999999999999999999999999999999999999999999987642 12467899999
Q ss_pred HhHHHHHHHccCChHhHHHHhhcCC-cccCCCCHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004748 671 CKFRKLAELLDMPLRSITAAWESGE-LLSCGFTLSEIEDFIKAIFADSTLRKECLWRIE 728 (732)
Q Consensus 671 ~Kf~~L~~iL~asL~dI~~~W~~G~-lla~~fs~~Ev~~LIrAlF~ds~~R~~~L~~I~ 728 (732)
++|+++.++|++||.||+.||.+|+ |++++||.+||++|||||||||++|+++|++|+
T Consensus 661 ~pl~el~~mL~asLmeIt~rW~dgkGplaa~fsrsEVk~lIkALFqDs~wRadaia~i~ 719 (719)
T KOG2163|consen 661 FPLNELVFMLGASLMEITHRWFDGKGPLAAHFSRSEVKGLIKALFQDSQWRADAIARIQ 719 (719)
T ss_pred ccHHHHHHHhCchHhHHHHHHhcCCccHHhhccHHHHHHHHHHHhhchHHHHHHHhhcC
Confidence 9999999999999999999999999 999999999999999999999999999999984
No 2
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=100.00 E-value=3.3e-91 Score=811.41 Aligned_cols=538 Identities=34% Similarity=0.546 Sum_probs=470.2
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhh-hcCCcccchHHH
Q 004748 21 DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGL-ISYRPIDKEVKE 99 (732)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~-i~~~~~~~~l~~ 99 (732)
+|+.||++|||+.+|++|.++++++|++|+++|+++|.+|.+.++++.+++.+++++.++|+++... +++ ++..++.+
T Consensus 2 ~~~~~l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~-~i~~~l~~ 80 (593)
T PF06248_consen 2 ASSGPLSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIEN-EIQPQLRD 80 (593)
T ss_pred CCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999555555 766 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCCCC-C--------------
Q 004748 100 IIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDEN-A-------------- 164 (732)
Q Consensus 100 ~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~~~-~-------------- 164 (732)
++++++.|++|+++++.+++++++|++++++|++++.++++|+|++|++.|++++..|+.++.. .
T Consensus 81 a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~ 160 (593)
T PF06248_consen 81 AAEELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYS 160 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997422 2
Q ss_pred -chhHHHHHHHHHHHHHhhhe----------------e--ecCC-CCCcHHHHHHHHHHhCcchHHHHHHHHHHHHHhhh
Q 004748 165 -SEPLVYGLLRKEWLVCFEEL----------------T--VDGL-DGIELRTVLEAMEVVGILDYGLAKVADLKIKYVIS 224 (732)
Q Consensus 165 -~~~~i~~~L~~~W~~lv~~~----------------t--v~~~-~~~~L~~vl~AL~~lg~L~~~l~~l~~~L~~~ii~ 224 (732)
++..+...|.+.|+++|.|- + ++.. ....|+++|+||+++|+|++++++|++.|++|||.
T Consensus 161 ~lr~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~ii~ 240 (593)
T PF06248_consen 161 ELRENLQYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKLKKFSKFLLEHIIK 240 (593)
T ss_pred HHHHHHHHHHHHHHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHHHHHHHHHHHHHHH
Confidence 24444445667788887742 1 1111 12349999999999999999999999999999999
Q ss_pred hhhcCCCCcccccccCCCCcccccceeeeeccCCccccCCChhhHHHHHHHHHHHHHHhcccCC---CchHHHhhhhhhH
Q 004748 225 PAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQN---GSWVRCFGRLTWP 301 (732)
Q Consensus 225 P~i~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~~~k~~~~~~~~v~~~l~~v~~FL~~~L~~~~---~~l~~~lg~~i~p 301 (732)
|+|.+|+..+.++... .+ ....+|++.+. ..+.+.+++++||++|..||+||+++|++.+ .+++.+||+.|||
T Consensus 241 PlI~~p~~~~~~~~~~-~~--~~~~~l~~~~~-~~~~~~~~~~~V~~~l~~vf~fL~~~L~~~~~~~~~l~~~~g~~i~~ 316 (593)
T PF06248_consen 241 PLISHPSSIVSVEESE-DG--SVEITLSYEPD-SSKDKRPSPKEVFSNLLLVFEFLHQHLLSLPSSDSSLSESFGDHIWP 316 (593)
T ss_pred HHhcCCCCcccccccC-CC--cceEEEEeecc-cccccCCCHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHH
Confidence 9999998755444321 11 12246777665 3444568999999999999999999996532 2588999999999
Q ss_pred HHHHHHHHhhcccCCCCChhhhhhHHHHHHHHHHHHHHHHHcccccCCCccchhHhHHHHhHHHHHHHhhhHHHHHHHHH
Q 004748 302 RISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARN 381 (732)
Q Consensus 302 ~ls~~lI~~~L~~aIP~~~~~l~~F~~vi~~~~~Fe~~L~~lgf~~~~~~~~~~L~~~v~~v~~~f~~krr~~~L~~AR~ 381 (732)
+++++||++||.|+||++.++|++|+.+++.+.+||++|+++||++++. ++|++|++|+++||++|||+++|++||+
T Consensus 317 ~ls~~lI~~~L~~aiP~~~~~l~~f~~v~~~~~~Fe~~L~~lgf~~~~~---~~L~~~~~~i~~~f~~kr~~~iL~~AR~ 393 (593)
T PF06248_consen 317 RLSELLISNCLSPAIPTSASELQEFEEVLESVEEFEEALKELGFLSSDN---TELSEFVDNIETHFANKRCQDILDKARD 393 (593)
T ss_pred HHHHHHHHhhCcCcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCc---hHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764 6999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCCCC---------CCCcc-----cCCCCCCCCcccccccccccceeecccHHHHHHHHHHHHHHhhhh
Q 004748 382 LLLQCDFAVPQESTGK---------DPICK-----NDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLS 447 (732)
Q Consensus 382 ll~~~d~~~~~~~~~~---------~~~~~-----~~g~~~~~~~~~~~~~~~~~~c~IS~~~~~l~~Li~~~L~ea~~s 447 (732)
||.++.++.+.++++. .+.+. .+....++++...+.+|++|+|+||+++++||+|++++|.||+.+
T Consensus 394 lm~~~~~~~v~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~c~IS~s~~~l~~L~~~~L~ea~~~ 473 (593)
T PF06248_consen 394 LMLRDLHDTVKVGPDSKAELPKLPSPGSSNKAKAKEESMSNENEDSLSPSLFQFPRCRISKSAQELVELAHQTLKEACKS 473 (593)
T ss_pred HHhcccccceEecccccccCCCCCCCcccchhhcccchhcccCccccccccccCCcceechhHHHHHHHHHHHHHHHhcC
Confidence 9998777766543220 11110 011112334455678999999999999999999999999999999
Q ss_pred chHhHHHHHHhHHHHHHHHHhhhhhhhHHhhccccchhhhhhhchHHHHHHHhhchhhhccCCCcchhhhhHHhhhhHHH
Q 004748 448 STRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRF 527 (732)
Q Consensus 448 s~~~a~~L~~~~~~i~~LyravvP~~h~~~l~~~p~~a~l~yNDc~YLa~~L~~l~~~~~~~l~~~~~~~~~Fvd~~~~~ 527 (732)
++.+|.+||+++|+|++||+++||+||++.|+++||+||+||||||||||||++++++|+.++|++++...+|+|++|+|
T Consensus 474 ~~~~a~~l~~~~r~i~~ly~~~vP~~h~~~l~~ip~~aalf~NdC~ylah~l~~l~~~~~~~~~~~~~~~~~f~d~v~~l 553 (593)
T PF06248_consen 474 SERCAAQLFQTARDIFELYRAVVPVYHKKLLESIPQQAALFHNDCMYLAHHLLTLGHEYRSKLPSPLKEIATFVDLVPRL 553 (593)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHccHHHHhhcccccHHHHhHhcchHHHHHHHHHhHHHHhhcCcchhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhh
Q 004748 528 HLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFE 566 (732)
Q Consensus 528 r~~a~~~~~~qi~~~~~~L~~~L~~a~gf~~~~~~~~~e 566 (732)
|.+|+.+|.+|++.|+++|.++|++|+||.++++..+|.
T Consensus 554 r~~g~~~~~~q~~~q~~~l~~~l~~a~~F~~~~~~~~~~ 592 (593)
T PF06248_consen 554 RRLGEECFSAQMQRQRSQLLEILDGASGFSNTDDEQNYS 592 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccCChhhccC
Confidence 999999999999999999999999999999998877663
No 3
>PF11989 Dsl1_C: Retrograde transport protein Dsl1 C terminal; InterPro: IPR021876 Dsl1 is a peripheral membrane protein required for transport between the Golgi and the endoplasmic reticulum []. It is localised to the ER membrane, and in vitro it specifically binds to coatomer, the major component of the protein coat of COPI vesicles []. Binding sites for coatomer are found on a disorganised region between the C and N termini of Dsl1 []. The C-terminal domain is involved in binding to the Sec39 subunit of the Dsl1p complex []. The N-terminal complexes with another subunit of the Dsl1p complex called Tip20 which forms heterodimers by pairing the N termini of each protein []. ; PDB: 3K8P_C.
Probab=100.00 E-value=2.5e-33 Score=294.14 Aligned_cols=258 Identities=24% Similarity=0.355 Sum_probs=178.7
Q ss_pred ccceeecccHHHHHHHHHHHHHHhhh-hchHhHHHHH-HhHHHHHHHHHhhhhhhhHHhhccccchhhhhhhchHHHHHH
Q 004748 421 SERCVVTKAASQLMKLVHQILQDICL-SSTRVAFEFY-HAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQE 498 (732)
Q Consensus 421 ~~~c~IS~~~~~l~~Li~~~L~ea~~-ss~~~a~~L~-~~~~~i~~LyravvP~~h~~~l~~~p~~a~l~yNDc~YLa~~ 498 (732)
.+++.||+.|+.+..++.+...++.. +...+..+-+ +..-.+..+|.|+++.+|. +. .+++|||--||+.+
T Consensus 22 ~~~i~vT~iP~~~~~i~~~f~~~~~~i~~~~~~~~~~~yk~nlLqt~~~A~~~~~y~----~~---~~~LynD~~yl~~~ 94 (291)
T PF11989_consen 22 TEKIKVTQIPDKFIKIINEFQKDSEDISQNKIDSQYFSYKANLLQTLFLAMSSVKYP----NN---WFQLYNDLKYLIQE 94 (291)
T ss_dssp ---EEEETHHHHHHHHHHHHHHHHHTTTTTSSHHHHH-HHHHHHHHHHHHHHHHH------S----HHHHHHHHHHHHHH
T ss_pred cceeEeehhhHHHHHHHHHHHHHHHhhccccccHHHHHHHhHHHHHHHHHHhhhhcc----cc---HHHHHHHHHHHHhc
Confidence 78999999999999999999998843 2222222222 2222234568888888773 22 49999999999987
Q ss_pred HhhchhhhccCCCcchhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCccchhhhhhhhHHHHHHHHHH
Q 004748 499 ILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGA-DGFQNTHQIQQFESAKFSIEQVVF 577 (732)
Q Consensus 499 L~~l~~~~~~~l~~~~~~~~~Fvd~~~~~r~~a~~~~~~qi~~~~~~L~~~L~~a-~gf~~~~~~~~~e~~~~ai~q~~~ 577 (732)
.+ .+..|.+ +....+...++.++..+.++|++. ++|.. .++..+|..++++.+.
T Consensus 95 ----~~-----------~L~r~~e-------l~~~~~~~~~~~~~k~v~~ll~~~~~~~~~---~e~~~~~~~~~~~l~~ 149 (291)
T PF11989_consen 95 ----NP-----------KLSRLQE-------LNWNQLEQELQSELKIVTDLLDGQLQNFSD---NERNPSWDITIDQLLP 149 (291)
T ss_dssp -----T-----------T-HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TSSS---HHHHHTHHH
T ss_pred ----ch-----------hHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---ccCChHHHHHHHHHHH
Confidence 11 2333333 344445556666667777888764 55543 3455677788999998
Q ss_pred HHHH-HHhhcccCCChHHHHHHHHHHHHHHHH-HHHHhhhcccCCCHHHHHHHHHHHHHHHHhhHhhhhhhHHhhcCCCC
Q 004748 578 ILEK-VHIIWEPLLLPSTYNRSMCTVLESVFS-RITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKT 655 (732)
Q Consensus 578 ~L~~-l~~~W~~vLp~~vy~~~ig~Lv~~v~~-~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~LF~~~~~~~~~~~~ 655 (732)
.++. +...|+++ ..+.|.+.+|.|++++++ .|+++|++++|||+.+|++|+.||+.+.... .+ +..
T Consensus 150 ~i~~~~~~~~~~~-~~~~~~~~i~~li~fv~n~~ii~~I~~~~dISE~qS~~Ls~li~~l~~~t-~i--~~l-------- 217 (291)
T PF11989_consen 150 YIQKEILEPLQQI-NHSEFKQFIGSLINFVYNDWIINSILSLDDISEKQSENLSELIDLLNNNT-EI--PSL-------- 217 (291)
T ss_dssp HHHHTHHHHHHTT------HHHHHHHHHHHHHTTHHHHHHTSS---HHHHHHHHHHHHHHHHHT-----GGG--------
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHcccc-ch--hhc--------
Confidence 8888 55556554 889999999999999986 7999999999999999999999999864432 22 111
Q ss_pred CCCCccchhhhchhHHhHHHHHHHccCChHhHHHHhhcCCcccCCCCHHHHHHHHHHhcCCChHHHHHHHHHHc
Q 004748 656 EGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIEN 729 (732)
Q Consensus 656 ~~~~~~~~~~~vp~W~Kf~~L~~iL~asL~dI~~~W~~G~lla~~fs~~Ev~~LIrAlF~ds~~R~~~L~~I~~ 729 (732)
...+.|+++|.||++++++|++|||||++||++|++. .|+++||++||||||+|||+|+++|.+|++
T Consensus 218 -----~~~~~y~~s~~Kf~~v~~lL~~hLkDIm~~Fy~Gel~--~fsTdElI~lIkslFadS~lR~n~I~eI~e 284 (291)
T PF11989_consen 218 -----NITPKYVESWNKFNNVGFLLNNHLKDIMEMFYQGELY--DFSTDELIQLIKSLFADSPLRDNYIDEIRE 284 (291)
T ss_dssp -----TT-HHHHHHHHHHHHHHHHHT--HHHHHHHHHTTGGG--GS-HHHHHHHHHHHS---HHHHHHHHHHHH
T ss_pred -----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh--cccHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 1356799999999999999999999999999999987 799999999999999999999999999986
No 4
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.31 E-value=9.9e-05 Score=79.39 Aligned_cols=199 Identities=17% Similarity=0.132 Sum_probs=145.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHH
Q 004748 26 LTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVS 105 (732)
Q Consensus 26 l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~ 105 (732)
++-+++....++++....-+-..+..-|.++|..|...+....++..++......+..+...|.. ++..+....=++-
T Consensus 28 ~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~--~~~~~~~~~L~Il 105 (291)
T PF10475_consen 28 LDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKS--ADENLTKSGLEIL 105 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHH
Confidence 66779999999999999999999999999999999999999999999988888888888887755 4444444444566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhhe-
Q 004748 106 AKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEL- 184 (732)
Q Consensus 106 ~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~~~~~~~~i~~~L~~~W~~lv~~~- 184 (732)
.+++.-+....++..|+.|+.+.+.-..++..+.+|+|..|++.+.+.+..++.....-.=..+-..|.+-+..+-..+
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld 185 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEEQLD 185 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHHHHH
Confidence 7777777788899999999999999999999999999999999999999999765433222222222222221111111
Q ss_pred ----ee-cCCCCCcHHHHHHHHHHhCcchHHHHHHHHHHHHHhhhhhhcCC
Q 004748 185 ----TV-DGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYG 230 (732)
Q Consensus 185 ----tv-~~~~~~~L~~vl~AL~~lg~L~~~l~~l~~~L~~~ii~P~i~~~ 230 (732)
++ ..=++..-..++.|-..||-... +++.+..+++.++-...
T Consensus 186 ~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~----~~dkl~~~f~~~i~~~~ 232 (291)
T PF10475_consen 186 SDLSKVCQDFDPDKYSKVQEAYQLLGKTQS----AMDKLQMHFTSAIHSTT 232 (291)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHH
Confidence 11 11123345778888888885444 55566666666654333
No 5
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.25 E-value=0.28 Score=54.95 Aligned_cols=282 Identities=16% Similarity=0.145 Sum_probs=155.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHH
Q 004748 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM 108 (732)
Q Consensus 29 ~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~ 108 (732)
.+|...|.++..++.++..+|.+.++..-..=...-+...++...+.+|-.+|..++.+=+. -+..|+.....++.|-
T Consensus 21 ~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~--sE~~V~~it~dIk~LD 98 (383)
T PF04100_consen 21 SNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEE--SEQMVQEITRDIKQLD 98 (383)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 48999999999999999999998888765332333333445555566666666666665333 1223444444433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCCCCCchhHHHHH------HHHHHHHHhh
Q 004748 109 KEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGL------LRKEWLVCFE 182 (732)
Q Consensus 109 ~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~~~~~~~~i~~~------L~~~W~~lv~ 182 (732)
.-=+-.+....+|+.++-+-..+++-+..++.++|.+++..|..+...+..-.....=+.|..+ ++......|.
T Consensus 99 ~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~~L~~qI~ 178 (383)
T PF04100_consen 99 NAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQIAELSKRIDQLQNELKEQIF 178 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222334445677777788888888888899999999999999999888666433322222221 1111211111
Q ss_pred ----he-ee-c-CCCCCcHHHHHHHHHHhCcchHHHH-HHHHHHHHHhhhhhhcCCCCcccccccCCCCcccccceeeee
Q 004748 183 ----EL-TV-D-GLDGIELRTVLEAMEVVGILDYGLA-KVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMV 254 (732)
Q Consensus 183 ----~~-tv-~-~~~~~~L~~vl~AL~~lg~L~~~l~-~l~~~L~~~ii~P~i~~~~~~~~v~~~~~~~~~~~~~~L~~~ 254 (732)
.+ .- + ..++.....+-.|+.+++.|+.... ++-+.+.++.+.++ ....... + + ...|
T Consensus 179 ~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~~qL~eY----~~iF~~~-----~-e--~~~L--- 243 (383)
T PF04100_consen 179 EDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVREELIDWFCNKQLKEY----RRIFREN-----D-E--AASL--- 243 (383)
T ss_pred HHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH----HHHHccc-----c-c--ccch---
Confidence 11 11 1 1122345566677788877776433 33333333333332 1111000 0 0 0001
Q ss_pred ccCCccccCCChhhHHHHHHHHHHHHHHh---cccC----CCchHHHhhhhhhHHHHHHHHHhhcccCCCCChhhhhhHH
Q 004748 255 PSVDDKIENVDGKTIYSGIIQVVKFIHKR---ICLQ----NGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQ 327 (732)
Q Consensus 255 ~~~~~k~~~~~~~~v~~~l~~v~~FL~~~---L~~~----~~~l~~~lg~~i~p~ls~~lI~~~L~~aIP~~~~~l~~F~ 327 (732)
.+++.-|.=+..+++-..+. +|.. ...+...|+..+-..+...+-. -+.+ -+...+-
T Consensus 244 ---------d~i~RRy~Wfkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~------~~~~-~dv~~Ll 307 (383)
T PF04100_consen 244 ---------DNIDRRYAWFKRLLKNFEEKFANIFPPSWRVPERLCVEFCEITRKDLSEILSK------RKSE-LDVKLLL 307 (383)
T ss_pred ---------hhHHHHHHHHHHHHHHHHhhccccCCCcCcHHHHHHHHHHHHHHHHHHHHHhh------cCCC-CcHHHHH
Confidence 12223333333333332222 2211 1245677888888888654433 1222 2567788
Q ss_pred HHHHHHHHHHHHHHHc
Q 004748 328 KIIDHTSEFEAALKEM 343 (732)
Q Consensus 328 ~vi~~~~~Fe~~L~~l 343 (732)
..++.|.+||+.|..-
T Consensus 308 ~aLq~T~~FE~~L~~r 323 (383)
T PF04100_consen 308 KALQKTLEFEKELAKR 323 (383)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999999754
No 6
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=96.90 E-value=0.45 Score=58.06 Aligned_cols=183 Identities=10% Similarity=0.124 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMK 109 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~ 109 (732)
-+..+..||+--+.++-..+-+.+.+--..-=.......-+...+..++.++..++..|+. +..+-...+..+.+|.+
T Consensus 35 ~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~--~e~~t~~s~~~L~~ld~ 112 (766)
T PF10191_consen 35 HLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKA--VEQDTAQSMAQLAELDS 112 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhccHHHHHHHHHHHHH
Confidence 3666666666666666666555544433333334444555666677777777777777765 55555667777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCC---CCCchhHHHHHHHHHHHHHhh-he-
Q 004748 110 EARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD---ENASEPLVYGLLRKEWLVCFE-EL- 184 (732)
Q Consensus 110 el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~---~~~~~~~i~~~L~~~W~~lv~-~~- 184 (732)
=-...+...+.|+......+...+++..+..|++..++..|.++++.|.... ....+....+.|++....++. .+
T Consensus 113 vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv 192 (766)
T PF10191_consen 113 VKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNRLEALVSPQLV 192 (766)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHhhHHHH
Confidence 6667777777888999999999999999999999999999999999887764 445677777778888887776 22
Q ss_pred -eecCCCCCcHHHHHHHHHHhCcchHHHHHH
Q 004748 185 -TVDGLDGIELRTVLEAMEVVGILDYGLAKV 214 (732)
Q Consensus 185 -tv~~~~~~~L~~vl~AL~~lg~L~~~l~~l 214 (732)
.+...+.......+.-+..+|..+.....+
T Consensus 193 ~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y 223 (766)
T PF10191_consen 193 QALNSRDVDAAKEYVKIFSSIGREPQLEQYY 223 (766)
T ss_pred HHHHhcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 222222223455566666667666644433
No 7
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=96.61 E-value=0.17 Score=55.79 Aligned_cols=156 Identities=13% Similarity=0.087 Sum_probs=114.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHH
Q 004748 25 PLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEV 104 (732)
Q Consensus 25 ~l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~ 104 (732)
-++-+.|..-..+|...+.++..++.+--.++|.-|+.......++......+.+.++++.+.|.. ............
T Consensus 6 s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~--L~~~~~~f~~~~ 83 (338)
T PF04124_consen 6 SLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPE--LDEACQRFSSKA 83 (338)
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 345678889999999999999999999999999999999999999999999999999998888754 344455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhh
Q 004748 105 SAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFE 182 (732)
Q Consensus 105 ~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~~~~~~~~i~~~L~~~W~~lv~ 182 (732)
.....+.+.+..++.-.+.+.++-..=.=.+.++..|.|.+|.+...-++..-...+....-..|...+...|..+..
T Consensus 84 ~~~~~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~ml~ 161 (338)
T PF04124_consen 84 QKISEERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQMLS 161 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHH
Confidence 555555555555554444444433332445588999999999999998888777776544444455445555655554
No 8
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.11 Score=61.69 Aligned_cols=144 Identities=17% Similarity=0.151 Sum_probs=119.0
Q ss_pred hhhHHHhhhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHh
Q 004748 7 TINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILG 86 (732)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (732)
-|||-.=|.+.+- +. +.....++|...-++--+.+.+-+..||.+|-....+=++.++.+..-+..|.+++.
T Consensus 32 lInvi~nL~~Se~---~e-----~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~ 103 (982)
T KOG3691|consen 32 LINVIRNLVGSED---TE-----PRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKN 103 (982)
T ss_pred hhhHHHhhccCCc---cc-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655554332 22 456677888888888889999999999999999988888888888888888888888
Q ss_pred hhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcC
Q 004748 87 LISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVG 160 (732)
Q Consensus 87 ~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~ 160 (732)
.++. .+.-|.---++++++--+=.+-+-+++++.+|.++.+.-+.+++.+..++|..|..+|.+++..|++.
T Consensus 104 ~L~~--~k~ll~~~rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~ 175 (982)
T KOG3691|consen 104 NLEA--CKELLNTRRDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGP 175 (982)
T ss_pred HHHH--HHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 8866 55566666667777777777777889999999999999999999999999999999999999999887
No 9
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=96.28 E-value=0.12 Score=49.11 Aligned_cols=112 Identities=16% Similarity=0.267 Sum_probs=81.7
Q ss_pred HHhhhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcC
Q 004748 11 RDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISY 90 (732)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 90 (732)
.++|.++...+++.. |+..-++||..-++++..++.+-+..+|.+.+.-+....++..-+.++...++.+...++-
T Consensus 15 n~ll~~~~~~~~~~l----d~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~R 90 (132)
T PF10392_consen 15 NDLLKSTNNNSDSEL----DISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYER 90 (132)
T ss_pred HHHHHhhcCCCCCcc----cHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666665555444 9999999999999999999999999999999999888888888888888777777777543
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 91 RPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIG 128 (732)
Q Consensus 91 ~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~ 128 (732)
++.+|.+==.++....+.++..++.+.+|+.+..+-
T Consensus 91 --L~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l 126 (132)
T PF10392_consen 91 --LRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFL 126 (132)
T ss_pred --HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555556666666665555555443
No 10
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=3.1 Score=47.83 Aligned_cols=283 Identities=17% Similarity=0.144 Sum_probs=148.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHH
Q 004748 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAK 107 (732)
Q Consensus 28 ~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l 107 (732)
+++|.++=+.|.....-++...-+-|+..|+||..+.--.=++-..+..++..|.++-..|.+ ..+-+..++..+..-
T Consensus 45 ~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlreei~s--~rgsV~ea~~alr~q 122 (705)
T KOG2307|consen 45 KVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLREEIKS--TRGSVGEAERALRQQ 122 (705)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHHHHHH--HHhhHHHHHHHHHHH
Confidence 456777777777788888889999999999999998776666666777777777777666654 333333333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hcCcHHHHHHHHHHHHHHhhcCCCCC---chhHHHH---
Q 004748 108 MKEARVKKELLELVRAIVEIGERLKGVKEAL----------RDGRLRFAAEELRELKKDLRVGDENA---SEPLVYG--- 171 (732)
Q Consensus 108 ~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l----------~~~~~~~Aa~~Le~~~~~l~~~~~~~---~~~~i~~--- 171 (732)
..|...+.+....+..+..+-..+.+....+ +.-.+..+|-.+.+++--........ -+..|..
T Consensus 123 ~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~sLERiAlelnqlkf~a~h~k~~l~p~~e~ria~~~~ 202 (705)
T KOG2307|consen 123 CSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGATSLERIALELNQLKFHASHLKGSLFPHSEERIAAEKI 202 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHHHHHhhcccCcchhhHHhhHHH
Confidence 2233333332222222222222222222222 11224444444444433222221110 0111111
Q ss_pred HHHHHHHHHhhheeecCCCCCcHHHHHHHHHHhCcchHHHHHHHHHHHHHhhhhhhcCCCCcccccccCCCCccccccee
Q 004748 172 LLRKEWLVCFEELTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAIL 251 (732)
Q Consensus 172 ~L~~~W~~lv~~~tv~~~~~~~L~~vl~AL~~lg~L~~~l~~l~~~L~~~ii~P~i~~~~~~~~v~~~~~~~~~~~~~~L 251 (732)
.|......++.. .+ +++...++..+.+-..++.-+..=. .....|+.|.|..-.. ++ .
T Consensus 203 ~L~qsl~~lf~e-gl-qsa~~~l~nclriYatld~t~~ae~----lfr~~vvapyi~evI~----eq-------~----- 260 (705)
T KOG2307|consen 203 ILSQSLAVLFAE-GL-QSAAGDLQNCLRIYATLDLTESAES----LFRLLVVAPYIAEVIN----EQ-------H----- 260 (705)
T ss_pred HHHHHHHHHHHH-Hh-hccHHHHHHHHHHHHHHhhchhHHH----HHHHHHHHHHHHHHHh----hh-------h-----
Confidence 111112222221 00 1123345555555555554444333 2233456665543211 10 0
Q ss_pred eeeccCCccccCCChhhHHHHHHHHHHHHHHhcc-------c---CCCchHHHhhhhhhHHHHHHHHHhhcccCCCCChh
Q 004748 252 RMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRIC-------L---QNGSWVRCFGRLTWPRISELIISNFLSKVVPEDAS 321 (732)
Q Consensus 252 ~~~~~~~~k~~~~~~~~v~~~l~~v~~FL~~~L~-------~---~~~~l~~~lg~~i~p~ls~~lI~~~L~~aIP~~~~ 321 (732)
.+ .+|+.+.....++++|+..|-+ . ++-....-+...+|+.+...|=...=+-.+|.+.
T Consensus 261 ------~e----~sp~gl~~~ykqilefv~~h~c~llre~tssdk~g~~~fdFlvnS~l~~ilt~iek~mps~f~Pgnp- 329 (705)
T KOG2307|consen 261 ------DE----TSPSGLLKLYKQILEFVKKHRCTLLREMTSSDKRGLPGFDFLVNSLLTFILTFIEKCMPSVFVPGNP- 329 (705)
T ss_pred ------cc----CCchhHHHHHHHHHHHHHHHHHHHHHHhchhhcCCCchHHHHHHHHHHHHHHHHHHhcccccCCCCc-
Confidence 00 3445566667788888885543 1 1235667788899999998877766566778776
Q ss_pred hhhhHHHHHHHHHHHHHHHHHccccc
Q 004748 322 KLADFQKIIDHTSEFEAALKEMMFIS 347 (732)
Q Consensus 322 ~l~~F~~vi~~~~~Fe~~L~~lgf~~ 347 (732)
..|.+--..+.+|-..+.+....+
T Consensus 330 --~~F~ekyk~t~DFl~~le~~~tC~ 353 (705)
T KOG2307|consen 330 --RLFHEKYKLTQDFLDNLESSHTCR 353 (705)
T ss_pred --HHHHHHHHHHHHHHHhccccCcCc
Confidence 346667777889988887765443
No 11
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.76 Score=53.96 Aligned_cols=284 Identities=13% Similarity=0.103 Sum_probs=168.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHH
Q 004748 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM 108 (732)
Q Consensus 29 ~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~ 108 (732)
.++...|.++..++.++...+.+-++..-..-...-.-..|+...+.++..+|..++++=|++ +..+++...+++.|-
T Consensus 36 ~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~T--e~~V~eiTrdIKqLD 113 (793)
T KOG2180|consen 36 TNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAEST--EAMVQEITRDIKQLD 113 (793)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHhhh
Confidence 388999999999999999999987777665555666668889999999999999999997773 444555555544321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCCCCCc--------------hhHHHHHHH
Q 004748 109 KEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENAS--------------EPLVYGLLR 174 (732)
Q Consensus 109 ~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~~~~~--------------~~~i~~~L~ 174 (732)
=-=+-.+..+.+|..+.=+-....+-+..+..+.|-+|+..|+.+-+.++.-..... +..++..+.
T Consensus 114 ~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~ 193 (793)
T KOG2180|consen 114 FAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAYKSVDEIANLSESIDKLKKSLLSQIF 193 (793)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112223344555555555556666779999999999999877777664422211 222222222
Q ss_pred HHHHHHhhheeecCCCCCcHHHHHHHHHHhCcchHHHHHHHHHHHHHhhhhhhcCCCCcccccccCCCCcccccceeeee
Q 004748 175 KEWLVCFEELTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMV 254 (732)
Q Consensus 175 ~~W~~lv~~~tv~~~~~~~L~~vl~AL~~lg~L~~~l~~l~~~L~~~ii~P~i~~~~~~~~v~~~~~~~~~~~~~~L~~~ 254 (732)
..++..|..-.. +.++..++-+=.|+.+++.|++.+. ..+++.+|.--+..-..... + |. + ...|
T Consensus 194 ~df~~~F~~~~~-~~~~~~l~~l~daC~v~d~lepsvr---eelIkwf~~qqL~ey~~IF~-e----n~-E--~a~L--- 258 (793)
T KOG2180|consen 194 QDFKAAFSGGET-HEEALLLQKLSDACLVVDALEPSVR---EELIKWFCSQQLEEYEQIFR-E----NE-E--AASL--- 258 (793)
T ss_pred HHHHHhcCCCCC-CCCccHHHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHHHHHHHHh-c----cH-h--hhhh---
Confidence 333333331111 1223445666678888888887554 35555555443322211111 1 00 0 0011
Q ss_pred ccCCccccCCChhhHHHHHHHHHH---HHHHhccc----CCCchHHHhhhhhhHHHHHHHHHhhcccCCCCChhhhhhHH
Q 004748 255 PSVDDKIENVDGKTIYSGIIQVVK---FIHKRICL----QNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQ 327 (732)
Q Consensus 255 ~~~~~k~~~~~~~~v~~~l~~v~~---FL~~~L~~----~~~~l~~~lg~~i~p~ls~~lI~~~L~~aIP~~~~~l~~F~ 327 (732)
..++..|.-+...+. -.+..+|. -...+...|++.+-.++...+.... .--++.-|-
T Consensus 259 ---------DkidrRY~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~Il~~~~-------~~~~v~lll 322 (793)
T KOG2180|consen 259 ---------DKLDRRYAWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLESILKRRK-------KEPDVKLLL 322 (793)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHhh-------hCccHHHHH
Confidence 123334443333333 22222221 1234667889888888887766654 224677888
Q ss_pred HHHHHHHHHHHHHHHcccc
Q 004748 328 KIIDHTSEFEAALKEMMFI 346 (732)
Q Consensus 328 ~vi~~~~~Fe~~L~~lgf~ 346 (732)
..+++|.+||+.|.. .|.
T Consensus 323 ~Alq~TleFE~~L~k-RF~ 340 (793)
T KOG2180|consen 323 FALQSTLEFEKFLDK-RFS 340 (793)
T ss_pred HHHHHHHHHHHHHHH-Hhc
Confidence 999999999999864 354
No 12
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=4.2 Score=48.05 Aligned_cols=195 Identities=13% Similarity=0.212 Sum_probs=112.5
Q ss_pred hHHHHHHHhhchhhhccCCCcchh------hhhHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCCcc-ch--h
Q 004748 492 CLYLSQEILGFAFEYHSDFPSSIK------EHAVFADMAPRFHLMAEEILQRQIQ-IVIFNLREALDGADGFQN-TH--Q 561 (732)
Q Consensus 492 c~YLa~~L~~l~~~~~~~l~~~~~------~~~~Fvd~~~~~r~~a~~~~~~qi~-~~~~~L~~~L~~a~gf~~-~~--~ 561 (732)
|.||-.=.-++..++..-+|.+.. .+..|..++..|+.+....|+.... ..+-.|+-.++...|.+. +. +
T Consensus 555 ~eyi~~L~~~le~~~~~vf~~~~d~~~l~~~l~~l~~l~~~f~~L~k~g~~~Lf~~~lkpRi~~~id~f~~is~~ls~ed 634 (773)
T KOG0412|consen 555 KEYIHTLKKTLESDCTEVFPQNFDRAKLKSCLSNLEALSLKFKDLLKWGMEQLFSTVLKPRIRPWIDTFVNISYNLSEED 634 (773)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhhhhhhhhhhccccHHH
Confidence 445444444454444433554331 2345555666677666444432221 111234455554333332 11 2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHhhhccc--CCCHHH-HHHHHHHHHHHHHh
Q 004748 562 IQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLD--DMAAEE-TLQLQRLIHLMLEN 638 (732)
Q Consensus 562 ~~~~e~~~~ai~q~~~~L~~l~~~W~~vLp~~vy~~~ig~Lv~~v~~~ii~~Il~l~--DIs~~e-s~~L~~l~~~~~~~ 638 (732)
-..|++-+.=|.+-++++.++-...++.|.+..|....+-+++.+...+=..|...+ +-+.-. =..+..||..
T Consensus 635 y~~~ea~d~~Vq~fl~~v~~l~~~~k~~ltp~nY~sLlsl~~~~ia~~LE~~i~k~~FNrlG~lqLDre~r~lis~---- 710 (773)
T KOG0412|consen 635 YAAYEANDPWVQQFLSSVEQLLAELKNSLTPENYDSLLSLIVDEIATQLEQIIWKIQFNRLGGLQLDRELRALISY---- 710 (773)
T ss_pred HhhhccCChHHHHHHHHHHHHHHhhhcccChhhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchHhhHHHHHHHHH----
Confidence 244566677799999999999999999999999999988888888776644333321 111100 0111122211
Q ss_pred hHhhhhhhHHhhcCCCCCCCCccchhhhchhHHhHHHHHHHccC-ChHhHHHHhhcCC-cccCCCCHHHHHHH
Q 004748 639 LSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDM-PLRSITAAWESGE-LLSCGFTLSEIEDF 709 (732)
Q Consensus 639 l~~LF~~~~~~~~~~~~~~~~~~~~~~~vp~W~Kf~~L~~iL~a-sL~dI~~~W~~G~-lla~~fs~~Ev~~L 709 (732)
|. +.. . ...-.+..|+.++.-+|+- .-.+|.+-|.... ++...+|++||+..
T Consensus 711 ----lt------~~t-----~----~~lRdKf~RLtQIatLLnle~~se~le~w~~~~g~~twrLt~~EVr~v 764 (773)
T KOG0412|consen 711 ----LT------GVT-----Q----WNLRDKFARLTQIATLLNLEKDSEILEYWGPNSGPLTWRLTPAEVRKV 764 (773)
T ss_pred ----hh------ccc-----c----hhHHHHHHHHHHHHHHHcccccchHHHhcCCCCCCceEEeCHHHHHHH
Confidence 11 000 0 0122466778888888877 7888899999886 77778999999874
No 13
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=96.10 E-value=1.8 Score=50.13 Aligned_cols=346 Identities=15% Similarity=0.169 Sum_probs=178.3
Q ss_pred hHHHhhhhhhHHHHHHHHHhhcccCCCCChhhhhhHHHHHHHHHHHHHHHHHc-ccccCCC-ccchhHhHHHHhHHHHHH
Q 004748 291 WVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEM-MFISASD-NKDARLSNFAENVEVHFA 368 (732)
Q Consensus 291 l~~~lg~~i~p~ls~~lI~~~L~~aIP~~~~~l~~F~~vi~~~~~Fe~~L~~l-gf~~~~~-~~~~~L~~~v~~v~~~f~ 368 (732)
....|-..+.|.+.+++-.. +|...++-.-|...+..+-.|.+.|++. |+.+... .+..-|. -+.+=..|+
T Consensus 66 ~~~~fi~~ll~~~~~Kl~~~-----l~~~~~~~~~l~HlI~e~~~FD~~L~~~~~y~~d~~~~~~~vL~--~~~~~~~Wl 138 (494)
T PF04437_consen 66 AREEFIRGLLPPVREKLRSD-----LPELLDDPSLLSHLIDEILSFDKELRSLYGYPGDWQGSTLDVLC--QPDWFDRWL 138 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----H--TTS-HHHHHHHHHHHHHHHHHHHHTS---S------CGGGS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhhccChhHHHHHHHHHHHHHHHHHHHcCCCCccchhHHHHhc--chHHHHHHH
Confidence 44556666667777666665 5777788889999999999999999988 4443000 0012221 122223444
Q ss_pred HhhhHHHHHHHHHhhhhcCCCCCCCCCCCCCCcccCCCCCCCCcccccccccccceeecccHHHHHHHHHHHHHHhhhhc
Q 004748 369 SRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSS 448 (732)
Q Consensus 369 ~krr~~~L~~AR~ll~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~c~IS~~~~~l~~Li~~~L~ea~~ss 448 (732)
+=-+...+.+--.+|.. .++|..+. ++. .........+.++..+++|+..+-+-...-+
T Consensus 139 ~~E~~~a~~r~~~i~~s-----------~~aw~~~~------~~~----~~~~~~~k~t~~A~~~~~Ll~~it~ry~~L~ 197 (494)
T PF04437_consen 139 NAEKEFALERFDEIISS-----------PDAWQIDY------DDV----EADSDELKPTKSAERFVKLLESITDRYRPLP 197 (494)
T ss_dssp HHHHHHHHHHHH--------------------------------H----TTSSGGGG-GGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccc-----------chhhhhhh------ccc----cCCchhhcchHHHHHHHHHHHHHHHHHhhcC
Confidence 44444444444444432 12331110 000 0112344578889999999998887553111
Q ss_pred h-HhHHHHH-HhHHHHHHHHHhhhhhhhHHhh---------cccc--chhhhhhhchHHHHHHHhhchhhhc-c------
Q 004748 449 T-RVAFEFY-HAARDAILLYEAIVPVKLERQL---------EGIN--QVAVLMHNDCLYLSQEILGFAFEYH-S------ 508 (732)
Q Consensus 449 ~-~~a~~L~-~~~~~i~~LyravvP~~h~~~l---------~~~p--~~a~l~yNDc~YLa~~L~~l~~~~~-~------ 508 (732)
. ..-.+.+ .+--.+++-|+.-....+.... .+.+ ...+..+|.+.|+.+.|...+.+.- -
T Consensus 198 ~~~~rl~Fl~~iql~lld~~~~~L~~~~~~~~~~~s~~~~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~ 277 (494)
T PF04437_consen 198 SLSHRLRFLIDIQLPLLDDYHDRLSQSLEAFESSTSTLASLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAKE 277 (494)
T ss_dssp H---GG--GHHHHHHHHHHTHHHHHHHHHHHHHT----SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccc
Confidence 1 0001222 4555666666665555432211 1111 2347789999999999999987621 0
Q ss_pred ---CCC--cchh-h-----hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCccchhh--hhhhhHHHHH
Q 004748 509 ---DFP--SSIK-E-----HAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDG---ADGFQNTHQI--QQFESAKFSI 572 (732)
Q Consensus 509 ---~l~--~~~~-~-----~~~Fvd~~~~~r~~a~~~~~~qi~~~~~~L~~~L~~---a~gf~~~~~~--~~~e~~~~ai 572 (732)
..+ .++. . ...|-+.+..++.+........+.....++++.+.. ...+.....+ ..-......+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~~~~S~el 357 (494)
T PF04437_consen 278 SESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKEFKASLKAYFKRSQWSSIESPSDSSPLSPSPEL 357 (494)
T ss_dssp ------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT--GGGT-------------GGG
T ss_pred hhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCcccccccccCCCCHHH
Confidence 001 0111 1 125777777888877666555555555555554422 2335443222 0001111112
Q ss_pred HHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhHhhhhhhHHhhcC
Q 004748 573 EQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQK 652 (732)
Q Consensus 573 ~q~~~~L~~l~~~W~~vLp~~vy~~~ig~Lv~~v~~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~LF~~~~~~~~~ 652 (732)
...+..|+..=..-+..||+..|.+.--.+++.+..-+.+.|+...-.|..-+.||..=++. +-.+|.+..
T Consensus 358 ~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l~~~Il~~n~Fs~~Ga~Ql~~D~~~----L~~~~~~~~----- 428 (494)
T PF04437_consen 358 VPALSLLRSRLSFLERSLPPADFRRIWRRIASKLDDYLWESILMSNKFSRAGAAQLQFDMRA----LFSVFSQYT----- 428 (494)
T ss_dssp HHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHTTTTTS-B-HHHHHHHHHHHHH----HHTTS--TT-----
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhhhcCeeChhHHHHHHHHHHH----HHHHHHhhc-----
Confidence 33344444333344456999999999999999999999999999999999999888554433 223332210
Q ss_pred CCCCCCCccchhhhchhHHhHHHHHHHccCCh
Q 004748 653 GKTEGDFARPLDDLIPSLCKFRKLAELLDMPL 684 (732)
Q Consensus 653 ~~~~~~~~~~~~~~vp~W~Kf~~L~~iL~asL 684 (732)
...-..|.|+.+-..+|+.+-
T Consensus 429 -----------~~p~~~f~~l~E~~~LL~L~~ 449 (494)
T PF04437_consen 429 -----------PRPEAFFKRLREACKLLNLPY 449 (494)
T ss_dssp -----------SGG-HHHHHHHHHHHHHGGGG
T ss_pred -----------cCHHHHHHHHHHHHHHcCCCC
Confidence 112357888888888887543
No 14
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=95.76 E-value=0.15 Score=49.02 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMK 109 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~ 109 (732)
.+....+++..--.++...+.+.|+.||..|.++..+=..+.+.+.+-++.+..++..|.+ ....|..--+++..|..
T Consensus 37 g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~--ak~~L~~~~~eL~~L~~ 114 (142)
T PF04048_consen 37 GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQE--AKSLLGCRREELKELWQ 114 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHH
Confidence 5677788888888888999999999999999999998888888888888888888888766 45666666677888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 110 EARVKKELLELVRAIVEIGERLKGVK 135 (732)
Q Consensus 110 el~~~~~~~~~l~~l~~~~~~L~~~~ 135 (732)
+-..-..++++|.+|.++.+.=++++
T Consensus 115 ~s~~~~~mi~iL~~Ie~l~~vP~kie 140 (142)
T PF04048_consen 115 RSQEYKEMIEILDQIEELRQVPDKIE 140 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 77777888888888877766555443
No 15
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=95.58 E-value=0.58 Score=53.99 Aligned_cols=328 Identities=18% Similarity=0.143 Sum_probs=198.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHH-HHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEV-SAKM 108 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~-~~l~ 108 (732)
+++.++.|+.+++...++++.....++..+|..+.+.+.|+++..+.+.++.-+.+.-+.+.+.+-+.+-.+... ..-.
T Consensus 31 v~r~~gnrv~shi~~~yskflp~~~s~~~di~E~~sL~rdi~~l~~~i~sdv~d~L~e~~~~~~d~e~qlev~l~~l~~~ 110 (719)
T KOG2163|consen 31 VVRKYGNRVVSHIVNAYSKFLPDRLSNLEDIAEMSSLTRDISNLIDQIASDVPDMLAEIKSQAQDCENQLEVQLMKLVEE 110 (719)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHhhhHHHHHHHhhhhhHHHHHHhhcchhhhhhHHHHHHHhhhhH
Confidence 889999999999999999999999999999999999999999999999988888877776644443333333333 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CcHHHHHHHHHHHHHHhhcCCCCCc---------------hhHH
Q 004748 109 KEARVKKELLELVRAIVEIGERLKGVKEALRD----GRLRFAAEELRELKKDLRVGDENAS---------------EPLV 169 (732)
Q Consensus 109 ~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~----~~~~~Aa~~Le~~~~~l~~~~~~~~---------------~~~i 169 (732)
+++....+....++..+.+...+..-+.+..- ||..-++..+..+...+......++ .+.+
T Consensus 111 qev~~~~E~~ncve~~kai~~~lq~l~ea~kll~~~grd~fd~~~lk~l~~vlrI~k~ne~yel~a~~~~~~~w~~~~s~ 190 (719)
T KOG2163|consen 111 QEVIMRSETTNCVEWGKAILACLQFLNEANKLLEGIGRDGFDMSVLKHLAAVLRILKYNERYELSADYERAMNWPKLSSI 190 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcccCccH
Confidence 55556666666777777666666666665544 7777666666665555555443221 1223
Q ss_pred HHHHHHHHHHHhh------heeec------CCCCCcHHHHHHHHHHhC---cchHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 004748 170 YGLLRKEWLVCFE------ELTVD------GLDGIELRTVLEAMEVVG---ILDYGLAKVADLKIKYVISPAVSYGSPIT 234 (732)
Q Consensus 170 ~~~L~~~W~~lv~------~~tv~------~~~~~~L~~vl~AL~~lg---~L~~~l~~l~~~L~~~ii~P~i~~~~~~~ 234 (732)
.+.+.+--+..++ .++.+ .+....++.+.++++..+ +|++.+..++..-..|++.|--..+.-
T Consensus 191 qe~ldr~~q~~~~~f~~ss~ve~q~~l~~t~sa~ia~s~l~E~~~~~k~~~Lldyclapvasrp~~hvyie~~p~~~~-- 268 (719)
T KOG2163|consen 191 QECLDRTNQVSFSVFNVSSRVEDQKMLNETLSAMIAISQLPERLDAWKIVILLDYCLAPVASRPGVHVYIEDNPTPDQ-- 268 (719)
T ss_pred HHHHHHHHHhheeeeeccchhhhhhcCChHHHHHHHHHHhHHHhhhHHHHHHHHHhHHHhccCccceeeeccCCCcce--
Confidence 3333333322222 12221 122345566667778888 899999988887777777764333321
Q ss_pred cccccCCCCcccccceeeeeccCCccccCCChhhHHHHHH-----------------HHHHHHHHhcccCCCchHHHhhh
Q 004748 235 FVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGII-----------------QVVKFIHKRICLQNGSWVRCFGR 297 (732)
Q Consensus 235 ~v~~~~~~~~~~~~~~L~~~~~~~~k~~~~~~~~v~~~l~-----------------~v~~FL~~~L~~~~~~l~~~lg~ 297 (732)
+. -.+.+.|- +.+....++..|+..+. .+++-+..|+- ..++.++-+
T Consensus 269 -~R-----------f~~~~~~~-s~a~~f~~v~~VlEsl~l~Lh~l~~~e~evt~~~~~~emigDhi~---e~l~~~l~k 332 (719)
T KOG2163|consen 269 -TR-----------FLINQKPR-SKADKFIDVAKVLESLELKLHVLHSHELEVTTGKTFTEMIGDHIE---EQLITMLLK 332 (719)
T ss_pred -ee-----------eeeccccC-chHhhhhHHHHHHHHhhhcccccccchhhhcccchHHHHHhHHHH---HHHHHHHHH
Confidence 11 11122221 11112234444544444 23333333332 123333322
Q ss_pred hhhHHHHHHHHHhhcccCCCCChhhhhhHHHHHHHHHHHHHHHHHcccccCCCcc----chhHhHHHHhHHHHHHHhhhH
Q 004748 298 LTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNK----DARLSNFAENVEVHFASRKKT 373 (732)
Q Consensus 298 ~i~p~ls~~lI~~~L~~aIP~~~~~l~~F~~vi~~~~~Fe~~L~~lgf~~~~~~~----~~~L~~~v~~v~~~f~~krr~ 373 (732)
++|+-. .|.--+-..+.+.|-+..+.-+.|-+.++.+||...+... ...=+-|++.--..-+.+-|+
T Consensus 333 -------~cl~~a--vP~~stkl~d~e~iie~t~qfE~aLkem~f~~~~dq~~allkfaed~ethfanRkc~~il~kARn 403 (719)
T KOG2163|consen 333 -------DCLAIA--VPVTSTKLEDQEMIIELTQQFEVALKEMKFLGFFDQKSALLKFAEDTETHFANRKCFAILSKARN 403 (719)
T ss_pred -------hhcccc--cCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233332 3555566677777777777777888888777777776320 122234777777777888888
Q ss_pred HHHHHHHHhhh
Q 004748 374 EILAKARNLLL 384 (732)
Q Consensus 374 ~~L~~AR~ll~ 384 (732)
-+...--++..
T Consensus 404 Li~~~~~~~v~ 414 (719)
T KOG2163|consen 404 LINETYDKLVT 414 (719)
T ss_pred HHHHHHhhhce
Confidence 77777666544
No 16
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=95.34 E-value=4.6 Score=47.55 Aligned_cols=232 Identities=15% Similarity=0.226 Sum_probs=143.4
Q ss_pred ceeecccHHHHHHHHHHHHHHhhhh-chHhHHHHHHhHHHHHHHHHhhhhhhhHHhhc------------cccchhhhhh
Q 004748 423 RCVVTKAASQLMKLVHQILQDICLS-STRVAFEFYHAARDAILLYEAIVPVKLERQLE------------GINQVAVLMH 489 (732)
Q Consensus 423 ~c~IS~~~~~l~~Li~~~L~ea~~s-s~~~a~~L~~~~~~i~~LyravvP~~h~~~l~------------~~p~~a~l~y 489 (732)
-|..|..|..++.+|.+.+.-|..+ ...+...........+.-|+.-.=.+..+.+. .....-+-+-
T Consensus 243 g~y~t~~~~difqmi~qql~va~~~l~~~v~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eyliA~~ 322 (566)
T PF06046_consen 243 GYYHTPLPVDIFQMINQQLDVASESLQGKVLQRVLEELANFLKSYQDAWQEFKEEHFKDRSSVKPKENPPGYLEYLIAVA 322 (566)
T ss_dssp S-EE-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--S-HHHHHHHHH
T ss_pred CCeecCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchHHHHHHHh
Confidence 3678999999999999999988432 22333334444455555565555555544442 2223447788
Q ss_pred hchHHHHHHHhhchhhhccCCCcchhh--hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhhh
Q 004748 490 NDCLYLSQEILGFAFEYHSDFPSSIKE--HAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFES 567 (732)
Q Consensus 490 NDc~YLa~~L~~l~~~~~~~l~~~~~~--~~~Fvd~~~~~r~~a~~~~~~qi~~~~~~L~~~L~~a~gf~~~~~~~~~e~ 567 (732)
|||..++..+..+...+.....+..+. ...|-.+...|-.++..+.+.-++.....+...+... |.. .=+..
T Consensus 323 N~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~L--ft~----~W~~~ 396 (566)
T PF06046_consen 323 NNCLRCRDYVESLEQKFEEKVSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKL--FTK----KWYSG 396 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTT--TSG----GGCTS
T ss_pred ccHHHHHHHHHHHHHhcccccchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh--CcC----cCcCc
Confidence 999999998888887776554422221 1345566667777777777666655555566655443 221 11222
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHhhhcc------cCCCHHHHHHHHHHHHHHHHhhHh
Q 004748 568 AKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLL------DDMAAEETLQLQRLIHLMLENLSS 641 (732)
Q Consensus 568 ~~~ai~q~~~~L~~l~~~W~~vLp~~vy~~~ig~Lv~~v~~~ii~~Il~l------~DIs~~es~~L~~l~~~~~~~l~~ 641 (732)
.+++..+..++.-..--+..|.++.|...++.+.+.++.+-+..++.- ......-+.++..= .+.+.+
T Consensus 397 --~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D----~~~l~~ 470 (566)
T PF06046_consen 397 --EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRD----AEQLKS 470 (566)
T ss_dssp ---HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHH----HHHHHH
T ss_pred --chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHH----HHHHHH
Confidence 458888999998888888889999999999999999999999999882 23444445444332 234455
Q ss_pred hhhhhHHhhcCCCCCCCCccchhhhchhHHhHHHHHHHc
Q 004748 642 LLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELL 680 (732)
Q Consensus 642 LF~~~~~~~~~~~~~~~~~~~~~~~vp~W~Kf~~L~~iL 680 (732)
+|..... ....-..|..+..+..+|
T Consensus 471 ~F~~~~~--------------~~~~~~~~~~l~~l~~ll 495 (566)
T PF06046_consen 471 FFSKLGS--------------KSEVKSSFDVLEDLLELL 495 (566)
T ss_dssp HHHHHTH--------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcc--------------cccccchHHHHHHHHHHH
Confidence 5554321 111235566777788887
No 17
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=95.32 E-value=0.0063 Score=57.81 Aligned_cols=104 Identities=21% Similarity=0.295 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMK 109 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~ 109 (732)
.|..+.+.|......++.++.+-|++.|.+|.++.....+....+..++..+..+...|++ +...+.....++...-+
T Consensus 27 ~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~--~~~~l~~~~~~i~~~l~ 104 (133)
T PF06148_consen 27 SLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVES--VRDELDNTQEEIEDKLE 104 (133)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHH--HHHS-STTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 5777888899999999999999999999999999888777777788888888777777655 44444444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 110 EARVKKELLELVRAIVEIGERLKGVK 135 (732)
Q Consensus 110 el~~~~~~~~~l~~l~~~~~~L~~~~ 135 (732)
+.+........++.+..+...+.+++
T Consensus 105 ~~~~l~~~k~~l~~~l~~~~~~~kle 130 (133)
T PF06148_consen 105 ERKELREEKALLKLLLDISESLEKLE 130 (133)
T ss_dssp HHHHHHHHHHT-SSSSHHH-------
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccc
Confidence 33333333334444444444444443
No 18
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=21 Score=43.06 Aligned_cols=123 Identities=17% Similarity=0.186 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMK 109 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~ 109 (732)
.....+++|..++..=-.||-.+=+.||.+|+.+.+ +...++++++.|++.+.+ .+.+++++..++---++
T Consensus 45 ~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsId-------EL~~Vr~daq~Lks~vsd--~N~rLQ~~g~eLiv~~e 115 (800)
T KOG2176|consen 45 QHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSID-------ELLKVRGDAQKLKSQVSD--TNRRLQESGKELIVKKE 115 (800)
T ss_pred CcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHH
Confidence 455678888888888888899999999999998754 444555555555555544 34556666665554444
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH-hhcCC
Q 004748 110 EAR-------VKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKD-LRVGD 161 (732)
Q Consensus 110 el~-------~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~-l~~~~ 161 (732)
++. .-..+...+.....+-..-...++.+.+|+|-.|++.++.+++. |..++
T Consensus 116 ~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~lE~~yL~~~~ 175 (800)
T KOG2176|consen 116 DLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLESLEKVYLPRVS 175 (800)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcc
Confidence 443 33334445555555555666778889999999999999987664 34443
No 19
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=20 Score=41.65 Aligned_cols=124 Identities=14% Similarity=0.085 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHH
Q 004748 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM 108 (732)
Q Consensus 29 ~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~ 108 (732)
|.|++.-.+|+....++-........+.|..|....+-..+...-....+.+...+...+.. -++......+..+.+.
T Consensus 34 e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~--L~s~~~~f~~~~~~i~ 111 (581)
T KOG2069|consen 34 EELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPE--LTSPCKRFQDFAEEIS 111 (581)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHH--hhhHHHHHHHHHHHhh
Confidence 36666667788888888888999999999999987777667666666667777666665433 3455666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 004748 109 KEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELK 154 (732)
Q Consensus 109 ~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~ 154 (732)
.+-..+..++....++.++.....--+.....|+|.+|.+.-.-+-
T Consensus 112 e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~ 157 (581)
T KOG2069|consen 112 EHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYAS 157 (581)
T ss_pred HhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 6667778888888888888888888889999999999987755433
No 20
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=2.4 Score=51.19 Aligned_cols=122 Identities=11% Similarity=0.113 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHH
Q 004748 36 SRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKK 115 (732)
Q Consensus 36 ~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~ 115 (732)
+||+.=..-+...+..-|.++-..|=..+..-.++..+......++..|...|.. ++....+-+.++.++...-+..+
T Consensus 246 ekLs~yLDvVE~~La~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~--vd~~~~~~s~~Ile~~~~r~n~~ 323 (951)
T KOG2115|consen 246 EKLSHYLDVVELHLAQEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKE--VDAENVRKSIKILELALTRKNVE 323 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444555667777888999999999998888888888888888888887755 67777777777777666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Q 004748 116 ELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRV 159 (732)
Q Consensus 116 ~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~ 159 (732)
.+.+.|..+..+++....++..+..++|+.|++..+..+..|+.
T Consensus 324 kL~~kL~~i~~V~~~q~~vq~ll~~~d~~~ALdlI~t~q~~L~g 367 (951)
T KOG2115|consen 324 KLLQKLRLIATVHQAQSTVQLLLSTQDFVGALDLIKTIQELLKG 367 (951)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 88889999999999999999999999999999999999999885
No 21
>PF15469 Sec5: Exocyst complex component Sec5
Probab=90.10 E-value=8.7 Score=38.26 Aligned_cols=111 Identities=11% Similarity=0.163 Sum_probs=74.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHh------HHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 48 KVQSYIASHHQDFASLFSLCNDTVSRTDEISTD------LSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELV 121 (732)
Q Consensus 48 ~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~------~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l 121 (732)
+....|..+|..|........++..+...-..+ ++.|...|.+ +...-......+..-+........++.++
T Consensus 3 ~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~--~~~~~~~~~~pll~~~~k~~~l~~~l~~l 80 (182)
T PF15469_consen 3 DLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNE--ASSKANSVFKPLLERREKADKLRNALEFL 80 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHH--HHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 345566777777777777766666666444333 3444444333 22222333333444455666677777788
Q ss_pred HHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcC
Q 004748 122 RAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVG 160 (732)
Q Consensus 122 ~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~ 160 (732)
+..+-+=..=...++++..|+|..|++--..++..++..
T Consensus 81 ~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 81 QRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 888877777788899999999999999999999887766
No 22
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=89.48 E-value=1.8 Score=37.54 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhc
Q 004748 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLIS 89 (732)
Q Consensus 28 ~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 89 (732)
-+++...-.+|...+.+..+++...|..+|.+|+........+...+..+...+..+...++
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~ 82 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQ 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999988887777777777776666666543
No 23
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=84.68 E-value=23 Score=41.91 Aligned_cols=124 Identities=23% Similarity=0.264 Sum_probs=81.5
Q ss_pred hhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCC-----cccchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 004748 59 DFASLFSLCNDTVSRTDEISTDLSDILGLISYR-----PIDKEVKEIIDEVSAKMKEAR-----VKKELLELVRAIVEIG 128 (732)
Q Consensus 59 ~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-----~~~~~l~~~~~~~~~l~~el~-----~~~~~~~~l~~l~~~~ 128 (732)
.|....+...++...++.+..+++.+...|..- ..+..+...-..+..+++++- |-.+.-.+=+++..+.
T Consensus 95 rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie 174 (560)
T PF06160_consen 95 RFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIE 174 (560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHH
Confidence 455555555555555555555555555554330 123466666677778888874 3444556677899999
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCCCCC-chhHHHHHHHHHHHHHhh
Q 004748 129 ERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENA-SEPLVYGLLRKEWLVCFE 182 (732)
Q Consensus 129 ~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~~~~-~~~~i~~~L~~~W~~lv~ 182 (732)
..+.++.+....|+|.+|.+.|.+++..+..+.... .=|.+|..+....-..+.
T Consensus 175 ~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~ 229 (560)
T PF06160_consen 175 EEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLE 229 (560)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999888877774222 124455445544444433
No 24
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=82.82 E-value=45 Score=37.51 Aligned_cols=113 Identities=9% Similarity=0.058 Sum_probs=66.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHH-hhh-cCCcccchHHHHHHHH
Q 004748 27 TAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDIL-GLI-SYRPIDKEVKEIIDEV 104 (732)
Q Consensus 27 ~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~-~~i-~~~~~~~~l~~~~~~~ 104 (732)
+.|.+..++.||.++++|++.+|-.. .....+...--..-.++..++..+++.|+.+. ..+ ....+.......-...
T Consensus 88 e~Es~~~kl~RL~~Ev~EL~eEl~~~-~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l~l~~~lg~~~~~~~~~~~~~~~ 166 (388)
T PF04912_consen 88 EKESPEQKLQRLRREVEELKEELEKR-KADSKESDEEKISPEELAQQLEELSKQLDSLKLEELLGEETAQDLSDPQKALS 166 (388)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHH-hhcccccccccCChhhHHHHHHHHHHHHHHhhcccccchhhhcccccchhhHH
Confidence 46788999999999999999999743 22222221222233456778888888888872 111 1100000000011122
Q ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004748 105 SAKMKEARVK-------------------------KELLELVRAIVEIGERLKGVKEALRD 140 (732)
Q Consensus 105 ~~l~~el~~~-------------------------~~~~~~l~~l~~~~~~L~~~~~~l~~ 140 (732)
.++..++... +.-...+..+..+..||...+.+++-
T Consensus 167 ~kl~~~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 167 KKLLSQLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGI 227 (388)
T ss_pred HHHHHhhhhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCC
Confidence 3333344332 11234678899999999999999877
No 25
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.50 E-value=55 Score=37.36 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHH----HhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHH
Q 004748 35 ISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTV----SRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKE 110 (732)
Q Consensus 35 i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~e 110 (732)
--||.--++++- ..+......-+..+.++...+ ..+..++..+..+.-.+.. +++.--+-+..+..+..-
T Consensus 44 e~KLQia~eeig----aalEEqSggal~rmPRaakd~~~Lq~Da~~Lq~kma~il~el~~--aegesadCiAaLaRldn~ 117 (828)
T KOG4182|consen 44 EAKLQIAIEEIG----AALEEQSGGALARMPRAAKDSAALQADAHRLQEKMAAILLELAA--AEGESADCIAALARLDNK 117 (828)
T ss_pred HHHHHHHHHHHh----HHHHHhccchHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhCChHHHHHHHHHhccH
Confidence 334444444443 344444444555566654433 3334455555554444322 334444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCC---CCCchhHHHHHHHHHHHHHhh
Q 004748 111 ARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD---ENASEPLVYGLLRKEWLVCFE 182 (732)
Q Consensus 111 l~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~---~~~~~~~i~~~L~~~W~~lv~ 182 (732)
-+..++..+.++.-..+.+.+.+.+.....|++..|++.|..++++|...+ ++..+..-.++++.....++.
T Consensus 118 kQkleaA~esLQdaaGl~nL~a~lED~Fa~gDL~~aadkLaalqkcL~A~~elaefAe~qkQlE~~edRLEAlaq 192 (828)
T KOG4182|consen 118 KQKLEAAKESLQDAAGLGNLLAELEDGFARGDLKGAADKLAALQKCLHAQEELAEFAERQKQLEDFEDRLEALAQ 192 (828)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcC
Confidence 566667777788888899999999999999999999999999999987764 444556666667776665554
No 26
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=80.64 E-value=33 Score=35.86 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhh------------------h
Q 004748 30 DLRLLISRLEFHSLQIKSKVQ---SYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGL------------------I 88 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~---~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------i 88 (732)
++....-.+..++.+++.++- +-..-.|.+|..--....|..+++.++..+++.-... +
T Consensus 56 q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sl 135 (333)
T KOG1853|consen 56 QLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSL 135 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhH
Confidence 344444444444444444432 1222334444444444445555554444444332222 2
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 89 SYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIV 125 (732)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~ 125 (732)
++ +.++|..++.+...|..||.+.+.++.-+..++
T Consensus 136 eD--feqrLnqAIErnAfLESELdEke~llesvqRLk 170 (333)
T KOG1853|consen 136 ED--FEQRLNQAIERNAFLESELDEKEVLLESVQRLK 170 (333)
T ss_pred HH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 456788888888888888888888775555544
No 27
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=74.13 E-value=18 Score=45.19 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=69.5
Q ss_pred hHHHhhhcCCCC------------CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHH
Q 004748 9 NVRDLLSTHDLT------------DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDE 76 (732)
Q Consensus 9 ~~~~~~~~~~~~------------~~~~~l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~ 76 (732)
-||+.|-..+++ +-..|++.+.+..+-++...++..|+- | +.|-.+- ..-..+|+.|.+..+.
T Consensus 1479 ~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~n-V-d~IL~~T---~~di~ra~~L~s~A~~ 1553 (1758)
T KOG0994|consen 1479 QVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPN-V-DAILSRT---KGDIARAENLQSEAER 1553 (1758)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccc-H-HHHHHhh---hhhHHHHHHHHHHHHH
Confidence 366666655552 223455555555554444444443321 1 1111111 1123345555555555
Q ss_pred HHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCcHHHHHHHHHHHH
Q 004748 77 ISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEA--LRDGRLRFAAEELRELK 154 (732)
Q Consensus 77 ~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~--l~~~~~~~Aa~~Le~~~ 154 (732)
.++..+.++...++ |+.+..+... .+-+...++-++.+.++...+.|.++++. -.|+-.-.|.+.+.+++
T Consensus 1554 a~~~A~~v~~~ae~------V~eaL~~Ad~--Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~ 1625 (1758)
T KOG0994|consen 1554 ARSRAEDVKGQAED------VVEALEEADV--AQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELE 1625 (1758)
T ss_pred HHhHHHHHHHHHHH------HHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554333 3333333333 33334444555566666667777777664 35666667777777777
Q ss_pred HHhhcC
Q 004748 155 KDLRVG 160 (732)
Q Consensus 155 ~~l~~~ 160 (732)
..++.+
T Consensus 1626 ~~~e~l 1631 (1758)
T KOG0994|consen 1626 TRMEEL 1631 (1758)
T ss_pred HHHHHH
Confidence 776655
No 28
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=73.29 E-value=29 Score=40.09 Aligned_cols=123 Identities=17% Similarity=0.132 Sum_probs=81.2
Q ss_pred hhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCC-----cccchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 004748 60 FASLFSLCNDTVSRTDEISTDLSDILGLISYR-----PIDKEVKEIIDEVSAKMKEARVKKEL-----LELVRAIVEIGE 129 (732)
Q Consensus 60 f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-----~~~~~l~~~~~~~~~l~~el~~~~~~-----~~~l~~l~~~~~ 129 (732)
|........|..++...+-++++.+...|..- ..+..+..+-+.+.+|++++..|.-. -.+=+++..+..
T Consensus 99 F~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~ 178 (570)
T COG4477 99 FNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEE 178 (570)
T ss_pred hHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 44555555566666666666666665554320 12346777777888999888665543 445567888999
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCC-------CCC-----chhHHHHHHHHHHHHHhh
Q 004748 130 RLKGVKEALRDGRLRFAAEELRELKKDLRVGD-------ENA-----SEPLVYGLLRKEWLVCFE 182 (732)
Q Consensus 130 ~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~-------~~~-----~~~~i~~~L~~~W~~lv~ 182 (732)
.|.++...-..|+|+.|.+.|+.++.-+..+. +.. .=|.-...|+.-+.+++.
T Consensus 179 ~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~ 243 (570)
T COG4477 179 ELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKE 243 (570)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 99999999999999999999997776655553 111 123444456666666655
No 29
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.06 E-value=1.6e+02 Score=35.34 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFS-------LCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIID 102 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~-------~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~ 102 (732)
-+..-+++|+..+.+++.+....+.+|+.+...-.- ....+..++.+++++++.+++.+.+ |.+. ++--.-
T Consensus 72 ~ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i~riknd~~e-pyk~-i~~kt~ 149 (797)
T KOG2211|consen 72 RIATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEIKRIKNDNKE-PYKI-IWLKTM 149 (797)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHH-HHHHHH
Confidence 467789999999999999999999999976543321 2345557777888888888887655 3331 110000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCC
Q 004748 103 EVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (732)
Q Consensus 103 ~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~ 161 (732)
.+.. |..-..+++-...+-++.+.|..-... ...+...||+.+-++...++...
T Consensus 150 vl~r----Lhva~~lLrrsgr~l~LskkL~~l~~~-~~~d~traaq~lneLd~l~e~~d 203 (797)
T KOG2211|consen 150 VLTR----LHVAENLLRRSGRALELSKKLASLNSS-MVVDATRAAQTLNELDSLLEVLD 203 (797)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHhhhcc-CCHhHHHHHHHHHHHHHHHHHhh
Confidence 0111 111222222223334455555433332 23347889999988888877764
No 30
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.94 E-value=32 Score=38.74 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQ----DFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVS 105 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~----~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~ 105 (732)
.|...|+.|..++++.+..+..++++-.. .|+.-..+++.-..+-......++.+++.|.++.....+-++...=.
T Consensus 244 ~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs 323 (439)
T KOG2911|consen 244 KLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGS 323 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhH
Confidence 35566677777777777777666665443 46666677777777777777888888888877655555555544311
Q ss_pred -HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004748 106 -AKMKEAR---VKKELLELVRAIVEIGERLKGVKEALRDG 141 (732)
Q Consensus 106 -~l~~el~---~~~~~~~~l~~l~~~~~~L~~~~~~l~~~ 141 (732)
.+|.-+. ..+-+.++|+.|.+-+.+=++++.++..+
T Consensus 324 ~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~ 363 (439)
T KOG2911|consen 324 EALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASY 363 (439)
T ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 1111111 12224445555555554444444444433
No 31
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=70.18 E-value=83 Score=37.31 Aligned_cols=120 Identities=22% Similarity=0.180 Sum_probs=76.1
Q ss_pred hhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCC-----cccchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 004748 59 DFASLFSLCNDTVSRTDEISTDLSDILGLISYR-----PIDKEVKEIIDEVSAKMKEARVK-----KELLELVRAIVEIG 128 (732)
Q Consensus 59 ~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-----~~~~~l~~~~~~~~~l~~el~~~-----~~~~~~l~~l~~~~ 128 (732)
.|........++...++.+..+++.+...|..- ..+..+...-..+..+++.+-.+ .+.-.+=+++..+.
T Consensus 99 ~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e 178 (569)
T PRK04778 99 RFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLE 178 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 355555555555555555555555554443320 12235556666677777777433 33344556788999
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCCCCCc-hhHHHHHHHHHHH
Q 004748 129 ERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENAS-EPLVYGLLRKEWL 178 (732)
Q Consensus 129 ~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~~~~~-~~~i~~~L~~~W~ 178 (732)
..+.++.+.-..|+|.+|-+.|.+++..+..+..... =|.+|..+....-
T Consensus 179 ~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P 229 (569)
T PRK04778 179 EEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELP 229 (569)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999988887743222 2445544554443
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=69.19 E-value=1.9e+02 Score=33.85 Aligned_cols=61 Identities=7% Similarity=0.153 Sum_probs=33.4
Q ss_pred hhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 59 DFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELV 121 (732)
Q Consensus 59 ~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l 121 (732)
++......+.++..+.+.+..++.++...+++ ....+..+-.++..+++++...+......
T Consensus 221 e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~--~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 221 KYDELVEEAKTIKAEIEELTDELLNLVMDIED--PSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555666666666666666666665543 33445555555555555555555444333
No 33
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.68 E-value=75 Score=34.83 Aligned_cols=7 Identities=0% Similarity=0.159 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 004748 129 ERLKGVK 135 (732)
Q Consensus 129 ~~L~~~~ 135 (732)
..|.+++
T Consensus 258 ~eI~e~~ 264 (325)
T PF08317_consen 258 AEIAEAE 264 (325)
T ss_pred HHHHHHH
Confidence 3333333
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=68.36 E-value=87 Score=38.99 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcC
Q 004748 120 LVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVG 160 (732)
Q Consensus 120 ~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~ 160 (732)
+-+.+.++..++++....++..++......++.+...+..+
T Consensus 625 ~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l 665 (880)
T PRK02224 625 RRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQV 665 (880)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777776666666666666666555555555
No 35
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=67.65 E-value=1.6e+02 Score=30.74 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=72.6
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhHhhhhhhHHhhcCCCCCCCCccchhhh
Q 004748 587 EPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDL 666 (732)
Q Consensus 587 ~~vLp~~vy~~~ig~Lv~~v~~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~LF~~~~~~~~~~~~~~~~~~~~~~~ 666 (732)
...+|+.+..-....++..+...++..-=...--|.+-=-...-=+..+..+++.++..- +. +-..|
T Consensus 114 ~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKCs~eGRalM~lD~q~~~~~le~l~~~~----------~~---p~~~~ 180 (234)
T PF10474_consen 114 QGPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKCSNEGRALMQLDFQQLQNKLEKLSGIR----------PI---PNREY 180 (234)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHcCCC----------CC---ccHHH
Confidence 455788877777777777777776665555555554432222222333344555544210 01 12346
Q ss_pred chhHHhHHHHHHHccCChHhHHHHhhcCCcccCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHH
Q 004748 667 IPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFAD-STLRKECLWRIE 728 (732)
Q Consensus 667 vp~W~Kf~~L~~iL~asL~dI~~~W~~G~lla~~fs~~Ev~~LIrAlF~d-s~~R~~~L~~I~ 728 (732)
|.++-|-=||.+ .| ...|..-+. +||...+.+||...... ...|.++|+.|.
T Consensus 181 Ve~YIKAyYl~e------~e-~~~W~~~h~---eYs~~ql~~Lv~~~~~~~kk~r~~ll~~ie 233 (234)
T PF10474_consen 181 VENYIKAYYLPE------EE-LEEWIRTHT---EYSKKQLVGLVNCAAASKKKTRQRLLNAIE 233 (234)
T ss_pred HHHHHHHHcCCH------HH-HHHHHHhCc---ccCHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 666666666443 35 355888884 79999999999999888 556778887765
No 36
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=64.99 E-value=1.1e+02 Score=31.70 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=46.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhhhhhhhhhHHHHhHHHHHHhHHHHH
Q 004748 27 TAPDLRLLISRLEFHSLQIKSKVQSYIASHH------QDFASLFSLCNDTVSRTDEISTDLSDIL 85 (732)
Q Consensus 27 ~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y------~~f~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (732)
..+.+...|..++++..++|.+|-..+.+-. .++..+..+..++++..+....-+.--+
T Consensus 43 ~~e~~~~~I~~lE~~aD~ik~~i~~~l~~~~flP~~R~Dil~L~~~~D~i~D~~ed~A~~l~l~~ 107 (217)
T COG1392 43 DAEELLKEIKDLEHEADEIKREIRLELYKGFFLPFDREDILELIESQDDIADAAEDAAKLLLLRK 107 (217)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3568999999999999999999999999832 5677777777777777776665555444
No 37
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=63.88 E-value=1e+02 Score=37.23 Aligned_cols=51 Identities=14% Similarity=0.265 Sum_probs=33.2
Q ss_pred hhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHH
Q 004748 65 SLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKK 115 (732)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~ 115 (732)
....++..+...+..+++.+...|...|...++.....++..+++++...+
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~ 441 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSE 441 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777788888888877765554566666666666666555443
No 38
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=63.12 E-value=1.7e+02 Score=29.35 Aligned_cols=61 Identities=13% Similarity=0.063 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhhhhhHHHHhHHHHHHhHHHHHhhhcC
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQD-FASLFSLCNDTVSRTDEISTDLSDILGLISY 90 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~-f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 90 (732)
.+...|..+..--..+||+.++.|+.+|.+ ..|..+....+.....+--+.+..-.+.+++
T Consensus 28 ~l~~ai~~~~~~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~~~~~vd~ 89 (204)
T PF04740_consen 28 SLQKAINQFISSESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIKDFQSEVDS 89 (204)
T ss_pred HHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcc
Confidence 344555555555555999999999999998 8888888766665554444555555555543
No 39
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=62.92 E-value=3.3e+02 Score=32.56 Aligned_cols=149 Identities=15% Similarity=0.193 Sum_probs=77.3
Q ss_pred HHHhhhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH-----------HHHhhhhhhhhhhhhhhHHH--HhHHH
Q 004748 10 VRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQS-----------YIASHHQDFASLFSLCNDTV--SRTDE 76 (732)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~~~k~~v~~-----------~i~~~y~~f~~~~~~~~~~~--~~~~~ 76 (732)
.++.+.+-+..|....|+++||+..|--.+.|+.++..++.+ .|.+..-+-...++..-... .--.+
T Consensus 295 L~si~p~l~~~d~~~~L~~~dln~liahah~rvdql~~~l~d~k~~~~~~~~~aiEk~Rl~~~~a~~~~~~~~~~~h~~~ 374 (657)
T KOG1854|consen 295 LESILPGLSLADKEENLSEDDLNKLIAHAHTRVDQLQKELEDQKADEELHIKRAIEKQRLQDSRALRAQLEYELEAHRRE 374 (657)
T ss_pred HHHhcCCCchhhhhhhccHhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHH
Confidence 445566667778889999999999999999999999888876 34554444222211111111 00111
Q ss_pred HHHhHHHHHhhhcC----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 004748 77 ISTDLSDILGLISY----RPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRE 152 (732)
Q Consensus 77 ~~~~~~~l~~~i~~----~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~ 152 (732)
+..+++.+..-+.+ -.-.+-.+.+..+..+++..++..++++ ..+.-+.+...+-+.+. +...++-.|...|.-
T Consensus 375 ~~~E~~~~~~~~~~~~~~el~~ql~~qa~ah~dhik~vvr~q~q~~-~~e~~~~~~e~~l~ern-l~~~qvg~aL~rLrg 452 (657)
T KOG1854|consen 375 LQQELFKLIEEIRSSSKNELRNQLKRQAKAHLDHIKDVVRQQEQLL-TIEFKQKLEEAVLQERN-LHSSQVGKALSRLRG 452 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhc-chHhHHHHHHHHHHh
Confidence 22222222222111 0011233444455566666666666655 33444444444433332 222333456666666
Q ss_pred HHHHhhcC
Q 004748 153 LKKDLRVG 160 (732)
Q Consensus 153 ~~~~l~~~ 160 (732)
+.++|..-
T Consensus 453 ie~aL~~~ 460 (657)
T KOG1854|consen 453 IEQALQER 460 (657)
T ss_pred HHHHHHHH
Confidence 66665543
No 40
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=62.80 E-value=73 Score=37.74 Aligned_cols=90 Identities=22% Similarity=0.272 Sum_probs=61.6
Q ss_pred HHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcCcHHH
Q 004748 69 DTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKE---LLELVRAIVEIGERLKGVKEALRDGRLRF 145 (732)
Q Consensus 69 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~---~~~~l~~l~~~~~~L~~~~~~l~~~~~~~ 145 (732)
++...+..+...|+.+=..+.. .+..+.+..+++...-+++....- .+.+-+.+..+...+.+....++++++..
T Consensus 198 ~l~~~~~~l~~~~e~IP~l~~~--l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~ 275 (560)
T PF06160_consen 198 KLKEETDELEEIMEDIPKLYKE--LQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDE 275 (560)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH--HHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3334444444444444443332 445666666666665555544322 24678899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 004748 146 AAEELRELKKDLRVG 160 (732)
Q Consensus 146 Aa~~Le~~~~~l~~~ 160 (732)
|-..++++...++.+
T Consensus 276 ~~~~~~~i~~~Id~l 290 (560)
T PF06160_consen 276 VEEENEEIEERIDQL 290 (560)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987766
No 41
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=62.77 E-value=1.5e+02 Score=31.45 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhh
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLI 88 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i 88 (732)
+++..|.++....++++.+|-+.+...... .......+..++......+..+...|
T Consensus 24 ~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~~~~~~r~~~l~~~i 79 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRRRIEEILESDSNG---QLLEIQQLKREIEELRERLERLRERI 79 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777788888888887777632222 33334444444444444444444443
No 42
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=62.67 E-value=3.4e+02 Score=32.63 Aligned_cols=124 Identities=14% Similarity=0.190 Sum_probs=70.5
Q ss_pred hhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 58 QDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEA 137 (732)
Q Consensus 58 ~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~ 137 (732)
.+|.+..+....+.+.++++.+.-+.+..++.. ...+-.+.+.+...|++|.+..+.-..++....+ +-.|.+.+..
T Consensus 38 ~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~--~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~-~f~Ls~~E~~ 114 (618)
T PF06419_consen 38 KEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSA--AKSETSDLLEEASELREQKEELELKKKLLDAFLE-RFTLSEEEED 114 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHH
Confidence 356666666666666666666666666666655 3455666666666666665544443333333222 1123333333
Q ss_pred -hhcC------cHHHHHHHHHHHHHHhhcCCCCCc---hh----HHHHHHHHHHHHHhhhe
Q 004748 138 -LRDG------RLRFAAEELRELKKDLRVGDENAS---EP----LVYGLLRKEWLVCFEEL 184 (732)
Q Consensus 138 -l~~~------~~~~Aa~~Le~~~~~l~~~~~~~~---~~----~i~~~L~~~W~~lv~~~ 184 (732)
+..| +|=.|+..+++++...+.+-.... -. .+...+...+.+++.|+
T Consensus 115 ~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL~~~~~~ag~~iM~~~~~~~e~a~erl~~w~ 175 (618)
T PF06419_consen 115 ALTSGEEPVDDEFFDALDRVQKIHEDCKILLSTENQRAGLEIMEQMSKYLERAYERLYRWV 175 (618)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 567888888888777666643321 22 23334667777888876
No 43
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=62.03 E-value=62 Score=31.30 Aligned_cols=113 Identities=14% Similarity=0.215 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHH
Q 004748 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM 108 (732)
Q Consensus 29 ~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~ 108 (732)
..|...+.++..++.+++.++..++.+... ..|--...+...+.+.++.+... ...+....
T Consensus 11 ~~L~~~~~~le~~i~~~~~~~k~~~~~~~~------~~A~~~lk~~k~~~k~~~~~~~~-------------~~~l~~~~ 71 (171)
T PF03357_consen 11 RRLEKQIKRLEKKIKKLEKKAKKAIKKGNK------ERAKIYLKRKKRLEKQLEKLLNQ-------------LSNLESVL 71 (171)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCTT-H------HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHH
Confidence 367777788888888888888777766552 22222222222222222222222 12233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcC
Q 004748 109 KEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVG 160 (732)
Q Consensus 109 ~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~ 160 (732)
-.++.......++..+......|..+...++-.++...+.-+++.....+.+
T Consensus 72 ~~ie~a~~~~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei 123 (171)
T PF03357_consen 72 LQIETAQSNQQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEI 123 (171)
T ss_dssp HHHHHHHHHHHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555556666666666566666665555554444433
No 44
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=58.33 E-value=2.5e+02 Score=29.68 Aligned_cols=109 Identities=9% Similarity=0.127 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCC------cccchHHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIA---SHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYR------PIDKEVKEI 100 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~---~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~------~~~~~l~~~ 100 (732)
.+...++.|...++.++.++..+.. +-+.+.-...++|.++...+..+...|..+...+..- .-..++...
T Consensus 49 ~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~ 128 (264)
T PF06008_consen 49 PLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRA 128 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHH
Confidence 4444578888888888777654433 3445666778888888888888888888888776331 112355555
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004748 101 IDEVSAKMKEA---RVKKELLELVRAIVEIGERLKGVKEAL 138 (732)
Q Consensus 101 ~~~~~~l~~el---~~~~~~~~~l~~l~~~~~~L~~~~~~l 138 (732)
..+++..-+++ .+....-.+=..+.++...|..++..+
T Consensus 129 l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 129 LAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554555 233333333344455555555555543
No 45
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=57.39 E-value=1.2e+02 Score=30.29 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=28.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHh
Q 004748 26 LTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTD 80 (732)
Q Consensus 26 l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~ 80 (732)
.++.|+....-.......++|.++.. .+..+|..+-...+.+...++.+..+
T Consensus 44 vtk~d~e~~~~~~~a~~~eLr~el~~---~~k~~~~~lr~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 44 VTKSDLENQEYLFKAAIAELRSELQN---SRKSEFAELRSENEKLQREIEKLRQE 95 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777763 33344444444444444444443333
No 46
>PRK10884 SH3 domain-containing protein; Provisional
Probab=57.16 E-value=83 Score=32.33 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 29 PDLRLLISRLEFHSLQIKSKVQSYI 53 (732)
Q Consensus 29 ~dl~~~i~~l~~~~~~~k~~v~~~i 53 (732)
|-++..+.+++.++.+++.+.-+.-
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888999999999988877643
No 47
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=57.01 E-value=87 Score=28.58 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=40.2
Q ss_pred hhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 65 SLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELV 121 (732)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l 121 (732)
.....+..+++....-++.+...+++-|...++++.--++.+++.+++...+-++-+
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334455566666677777777777777888888888888888887777766655333
No 48
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=56.49 E-value=2.1e+02 Score=29.29 Aligned_cols=95 Identities=11% Similarity=0.204 Sum_probs=59.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcc------------
Q 004748 26 LTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPI------------ 93 (732)
Q Consensus 26 l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~------------ 93 (732)
.+++.|...+.+=..|+..+++++..+ .++|-+-+.+-+-|-|.+..+.+-++.. +.+.-.+..+
T Consensus 57 ~~~~~L~~~LrEkEErILaLEad~~kW-EqkYLEEs~mrq~a~dAaa~aa~~rdtt--iI~~s~~~s~~~s~r~~eel~~ 133 (205)
T PF12240_consen 57 NNASNLKELLREKEERILALEADMTKW-EQKYLEESAMRQFAMDAAATAAAQRDTT--IINHSPSESYNSSLREEEELHM 133 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHhcCCCCCCCccccchHHHHH
Confidence 678899999999999999999999965 6666666666555555554443332220 1111000011
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 94 -DKEVKEIIDEVSAKMKEARVKKELLELVRA 123 (732)
Q Consensus 94 -~~~l~~~~~~~~~l~~el~~~~~~~~~l~~ 123 (732)
+.+.++.-.+++.|+.+|.+..+++.+|.+
T Consensus 134 a~~K~qemE~RIK~LhaqI~EKDAmIkVLQq 164 (205)
T PF12240_consen 134 ANRKCQEMENRIKALHAQIAEKDAMIKVLQQ 164 (205)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 235556666677777777777777666654
No 49
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=56.18 E-value=1.9e+02 Score=34.25 Aligned_cols=106 Identities=12% Similarity=0.125 Sum_probs=70.2
Q ss_pred chhhHHHhhhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHH
Q 004748 6 DTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDIL 85 (732)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (732)
+.--|++.|.++|-.+|.+. ++...+.++++.+.| +|....+..+++++|..+...=+.++.
T Consensus 34 ~~e~v~~~lktg~~lr~y~~----~ve~~l~k~e~~Siq--------------dyi~es~~~~~lhNqi~~cd~Vl~rme 95 (683)
T KOG1961|consen 34 DDELVKEALKTGDDLREYSK----QVENELRKAERKSIQ--------------DYIKESENLASLHNQIRACDSVLERME 95 (683)
T ss_pred chHHHHHHHhcCCcchHHHH----HHHHHHHHHHhhhhH--------------HHHHhhhhhhhHhhhHHHHHHHHHHHH
Confidence 33357777777776666655 666666666665555 777777778888888888877777777
Q ss_pred hhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 86 GLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGV 134 (732)
Q Consensus 86 ~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~ 134 (732)
+.++. ++.+|....++++.++++-...+. .|+.-+.+...|+++
T Consensus 96 ~~L~~--FQ~~L~sissDI~~lqekS~~m~~---~L~Nrq~v~s~Ls~f 139 (683)
T KOG1961|consen 96 TMLSS--FQSDLSSISSDIKILQEKSNDMQL---RLENRQAVESKLSQF 139 (683)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHhhHHHH---HHHhHHHHHHHHHHH
Confidence 77766 788888888888876655433333 334444444444443
No 50
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=55.68 E-value=2.1e+02 Score=30.07 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcC
Q 004748 31 LRLLISRLEFHSLQIKSKVQSYIASH---HQDFASLFSLCNDTVSRTDEISTDLSDILGLISY 90 (732)
Q Consensus 31 l~~~i~~l~~~~~~~k~~v~~~i~~~---y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 90 (732)
|...++|+..+.......+...-... ...+...-....++-.++..+..+|+.+-.++.+
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~ 77 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKR 77 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555544433332221111 1234444455556666666666666666666554
No 51
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=54.47 E-value=1.7e+02 Score=32.64 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=8.4
Q ss_pred hhhHHHHHHHHHHHH
Q 004748 28 APDLRLLISRLEFHS 42 (732)
Q Consensus 28 ~~dl~~~i~~l~~~~ 42 (732)
+.++..=++|+.-+.
T Consensus 193 ~~eWklEvERV~PqL 207 (359)
T PF10498_consen 193 PAEWKLEVERVLPQL 207 (359)
T ss_pred HHHHHHHHHHHhhhh
Confidence 345666566665554
No 52
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=53.28 E-value=92 Score=34.80 Aligned_cols=95 Identities=24% Similarity=0.357 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHH
Q 004748 28 APDLRLLISRLEFHSLQIKSK---VQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEV 104 (732)
Q Consensus 28 ~~dl~~~i~~l~~~~~~~k~~---v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~ 104 (732)
+-|+|.-+++++.....|+.. +...+.+-+.++.. .++.+.++ |. -+...+...+.+|
T Consensus 215 ~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~-----------------~lekI~sR-Ek-~iN~qle~l~~eY 275 (359)
T PF10498_consen 215 AKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISK-----------------TLEKIESR-EK-YINNQLEPLIQEY 275 (359)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----------------HHHHHHHH-HH-HHHHHhHHHHHHH
Confidence 359999999888766655543 22233332222222 22222222 00 1222444444444
Q ss_pred HHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004748 105 SAKMKEA-------R-VKKELLELVRAIVEIGERLKGVKEALRDG 141 (732)
Q Consensus 105 ~~l~~el-------~-~~~~~~~~l~~l~~~~~~L~~~~~~l~~~ 141 (732)
.....++ + .+..+.+....+.+|...|.++.+.++++
T Consensus 276 r~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 276 RSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443333 2 34445566778888999999999888766
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=52.84 E-value=2.5e+02 Score=35.90 Aligned_cols=123 Identities=17% Similarity=0.256 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHHH-----H-HHHHHHHHhhhhh-----hhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHH
Q 004748 30 DLRLLISRLEFHSLQI-----K-SKVQSYIASHHQD-----FASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVK 98 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~-----k-~~v~~~i~~~y~~-----f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~ 98 (732)
++...|+++.++++++ | .+|. .|...+.. .-.--....++..|.+.+..++..+...|++ ..+.+.
T Consensus 862 ~~~~~ie~l~kE~e~~qe~~~Kk~~i~-~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~--s~~~i~ 938 (1293)
T KOG0996|consen 862 ELEEQIEELKKEVEELQEKAAKKARIK-ELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKT--SDRNIA 938 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhc--CcccHH
Confidence 5567799999999998 4 3332 22222221 2222344778888888888899998988888 356777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcC
Q 004748 99 EIIDEVSAKMKEARVKKELL-ELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVG 160 (732)
Q Consensus 99 ~~~~~~~~l~~el~~~~~~~-~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~ 160 (732)
.+-..+..+.+++...+.-+ .+-+.+..+.....+ .+++|-+|.+.+.+++..+..+
T Consensus 939 k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E-----~~~~~~e~~~~~~E~k~~~~~~ 996 (1293)
T KOG0996|consen 939 KAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAE-----LEKEYKEAEESLKEIKKELRDL 996 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888887666533 233444555544444 5678888888888888887665
No 54
>PRK01156 chromosome segregation protein; Provisional
Probab=50.29 E-value=2.5e+02 Score=35.08 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhhc
Q 004748 144 RFAAEELRELKKDLRV 159 (732)
Q Consensus 144 ~~Aa~~Le~~~~~l~~ 159 (732)
..|+..+...+.+++.
T Consensus 732 ~~~~~~l~~~r~~l~k 747 (895)
T PRK01156 732 KKAIGDLKRLREAFDK 747 (895)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3444445555555554
No 55
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=49.88 E-value=1.6e+02 Score=32.27 Aligned_cols=59 Identities=10% Similarity=0.161 Sum_probs=29.8
Q ss_pred hHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Q 004748 80 DLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELL-ELVRAIVEIGERLKGVKEALRD 140 (732)
Q Consensus 80 ~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~-~~l~~l~~~~~~L~~~~~~l~~ 140 (732)
+++.++..|.. ...++.....++..+++|++..+.-+ ..-....++...|.+++.-+++
T Consensus 205 eL~~lk~~l~~--~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 205 ELDRAKEKLKK--LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555544433 34445555555555556665444443 3334455555666666655433
No 56
>PRK03918 chromosome segregation protein; Provisional
Probab=49.62 E-value=3.2e+02 Score=33.94 Aligned_cols=8 Identities=13% Similarity=-0.172 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q 004748 174 RKEWLVCF 181 (732)
Q Consensus 174 ~~~W~~lv 181 (732)
...++.+|
T Consensus 746 ~~~~~~if 753 (880)
T PRK03918 746 GEIASEIF 753 (880)
T ss_pred HHHHHHHH
Confidence 33333333
No 57
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=48.71 E-value=3.3e+02 Score=34.89 Aligned_cols=126 Identities=19% Similarity=0.167 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCccc-----chHHHH
Q 004748 29 PDLRLLISRLEFHSLQIKSKVQSYIASHH---QDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPID-----KEVKEI 100 (732)
Q Consensus 29 ~dl~~~i~~l~~~~~~~k~~v~~~i~~~y---~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-----~~l~~~ 100 (732)
-|+...|.+-..+.+++..-|.++..+-- ..=...+..++....|+++-..++++|...|.+=..+ ..++..
T Consensus 1418 ~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~v 1497 (1758)
T KOG0994|consen 1418 GDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEV 1497 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 35556666656666666555554433221 1111222233333344444444444444444331111 123333
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh--hcCcHHHHHHHHHHHHHH
Q 004748 101 IDEVSAKMKEAR-VKKELLELVRAIVEIGERLKGVKEAL--RDGRLRFAAEELRELKKD 156 (732)
Q Consensus 101 ~~~~~~l~~el~-~~~~~~~~l~~l~~~~~~L~~~~~~l--~~~~~~~Aa~~Le~~~~~ 156 (732)
+.++.. .+|. .-+++..+-.+|++.-..|..++.-+ ..|++..|.+++.++..+
T Consensus 1498 A~~vL~--l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a 1554 (1758)
T KOG0994|consen 1498 AEEVLA--LELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERA 1554 (1758)
T ss_pred HHHHHh--ccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 333222 2222 33455556677777777777777665 456777777777776665
No 58
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=48.25 E-value=2.2e+02 Score=34.35 Aligned_cols=41 Identities=22% Similarity=0.040 Sum_probs=18.1
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhh
Q 004748 141 GRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFE 182 (732)
Q Consensus 141 ~~~~~Aa~~Le~~~~~l~~~~~~~~~~~i~~~L~~~W~~lv~ 182 (732)
..+..++...+.+...|+..... .+......|...++.+|.
T Consensus 476 ~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~le~~~~~~f~ 516 (650)
T TIGR03185 476 FELERAITIADKAKKTLKEFREK-LLERKLQQLEEEITKSFK 516 (650)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33444445555555555544211 222222335555555554
No 59
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=48.19 E-value=1.4e+02 Score=28.38 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=6.1
Q ss_pred HhHHHHHHhHHHHH
Q 004748 72 SRTDEISTDLSDIL 85 (732)
Q Consensus 72 ~~~~~~~~~~~~l~ 85 (732)
.|++.+...+|+..
T Consensus 68 qRId~vd~klDe~~ 81 (126)
T PF07889_consen 68 QRIDRVDDKLDEQK 81 (126)
T ss_pred HHHHHHHhhHHHHH
Confidence 44444444444433
No 60
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=46.90 E-value=5.5e+02 Score=31.25 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhh
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGL 87 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (732)
|.....++|.++...+++.-...|...-.....++...+.....++.+...+..-...
T Consensus 2 dad~~~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~ 59 (701)
T PF09763_consen 2 DADAFEERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVE 59 (701)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888877655555444444444444444444444444444433333
No 61
>PRK09039 hypothetical protein; Validated
Probab=46.83 E-value=3.5e+02 Score=29.94 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 004748 35 ISRLEFHSLQIKSKV 49 (732)
Q Consensus 35 i~~l~~~~~~~k~~v 49 (732)
|+....++.++.++|
T Consensus 48 i~~~~~eL~~L~~qI 62 (343)
T PRK09039 48 ISGKDSALDRLNSQI 62 (343)
T ss_pred HhhHHHHHHHHHHHH
Confidence 333333333333333
No 62
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=46.28 E-value=2.3e+02 Score=30.58 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=25.9
Q ss_pred ChhhHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhhhhh
Q 004748 27 TAPDLRLLISRLEFH---SLQIKSKVQSYIASHHQDFASLF 64 (732)
Q Consensus 27 ~~~dl~~~i~~l~~~---~~~~k~~v~~~i~~~y~~f~~~~ 64 (732)
.+-|+|.-|+.|+.. +++--+++-.++.+-+.+|....
T Consensus 221 DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~L 261 (384)
T KOG0972|consen 221 DAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKAL 261 (384)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 456899988877654 44444566677888777776553
No 63
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=46.25 E-value=3e+02 Score=30.21 Aligned_cols=25 Identities=4% Similarity=0.157 Sum_probs=19.7
Q ss_pred hhhhhchHHHHHHHhhchhhhccCC
Q 004748 486 VLMHNDCLYLSQEILGFAFEYHSDF 510 (732)
Q Consensus 486 ~l~yNDc~YLa~~L~~l~~~~~~~l 510 (732)
.-.+.-|||.+..+...|..|+.-+
T Consensus 293 ~sll~q~~y~~~S~~r~g~DF~~ll 317 (338)
T PF04124_consen 293 ESLLTQLMYFASSFGRVGADFRPLL 317 (338)
T ss_pred HHHHHHHHHHHHhcCccCCChHHHh
Confidence 5567789999999999988875443
No 64
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=46.14 E-value=1.4e+02 Score=34.15 Aligned_cols=158 Identities=14% Similarity=0.155 Sum_probs=95.7
Q ss_pred hhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 004748 63 LFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKEL-------LELVRAIVEIGERLKGVK 135 (732)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~-------~~~l~~l~~~~~~L~~~~ 135 (732)
.+..|.++..++.++..++..+...+.+.....+ ...++++.|..+++...+- ...-..| +.++|.+.+
T Consensus 207 ~LP~Ar~~~~~L~~~E~~L~~l~~~~~~~~~~~~--~LL~~Lt~LAa~vE~~~a~t~~RF~As~AY~~i--V~~RL~eLr 282 (420)
T PF11902_consen 207 GLPVARELSPELSELEQRLAALTQRMASSEDTDD--ELLDELTRLAAEVEALAARTSYRFSASRAYYEI--VEQRLAELR 282 (420)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH--HHHHHHHhc
Confidence 3677888899999999999999999887422222 6667777777776543322 1222222 355666665
Q ss_pred HH----------hhcCcHHHHHHHHHHHHHHhhcCC------CCCchhHHHHHHHHHHHHHhhheeecCCCCCcHHHHHH
Q 004748 136 EA----------LRDGRLRFAAEELRELKKDLRVGD------ENASEPLVYGLLRKEWLVCFEELTVDGLDGIELRTVLE 199 (732)
Q Consensus 136 ~~----------l~~~~~~~Aa~~Le~~~~~l~~~~------~~~~~~~i~~~L~~~W~~lv~~~tv~~~~~~~L~~vl~ 199 (732)
+. .-++|+.-|+++++.+..-++.+. +..++.-|=-.+...=+++...+.=...-...||.+++
T Consensus 283 E~~i~g~~tl~eF~~RRl~PAmrTC~a~~~R~~~Ls~rv~Ra~~LLRTrVdv~le~QN~~LL~SM~rRa~lQLrLQqtVE 362 (420)
T PF11902_consen 283 EERIPGYQTLSEFLERRLTPAMRTCEAVERRQEDLSRRVARATDLLRTRVDVELEQQNQDLLASMDRRARLQLRLQQTVE 362 (420)
T ss_pred ccccCCCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 54 345678889999998888877774 11223332211222222333322100001246899999
Q ss_pred HHHHhCcchHHHHHHHHHHHHHhhhhhhcC
Q 004748 200 AMEVVGILDYGLAKVADLKIKYVISPAVSY 229 (732)
Q Consensus 200 AL~~lg~L~~~l~~l~~~L~~~ii~P~i~~ 229 (732)
+|++.-+--|.+. |+.++++++-..
T Consensus 363 GLSVvAIsYY~vg-----L~~y~~k~l~~~ 387 (420)
T PF11902_consen 363 GLSVVAISYYVVG-----LLGYLLKGLKAA 387 (420)
T ss_pred hHHHHHHHHHHHH-----HHHHHHhhHhhc
Confidence 9999888777554 777888776443
No 65
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.93 E-value=1.2e+02 Score=35.09 Aligned_cols=174 Identities=13% Similarity=0.041 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 004748 38 LEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKEL 117 (732)
Q Consensus 38 l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~ 117 (732)
|-.++..+-++++--+..+|..|.+.-.....+-+.-.++..+++.+...+.+ ++....-...-+.+...-+....+.
T Consensus 58 MV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L~~~ms~--i~~~s~~l~g~L~ekre~I~kLg~~ 135 (636)
T KOG2346|consen 58 MVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGLEEVMSS--IQSKSDGLAGSLFEKRELIKKLGQR 135 (636)
T ss_pred HHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhHHHHHHH--HhhhhccccchhHHhHHHHHHhcCC
Confidence 34456667778998999999999987444444444444444444444443322 1211111111122222223333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhhe---eecCCCC-Cc
Q 004748 118 LELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEL---TVDGLDG-IE 193 (732)
Q Consensus 118 ~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~~~~~~~~i~~~L~~~W~~lv~~~---tv~~~~~-~~ 193 (732)
..++.+++-+-..=...+...+.+.|-+|.+.-..+...++.-...-....+-..-++....++..+ .-++..+ ..
T Consensus 136 ~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~qY~~~psfq~~~~~seei~~rl~~qL~~rlr~~~sga~~ 215 (636)
T KOG2346|consen 136 PPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQYDGRPSFQEDDVPSEEIRLRLVAQLGTKLRSDSSGAQA 215 (636)
T ss_pred ccchhhhHHHhhhHHHHHHhccccccchhhccccccccchhhcCCCCcHHHhccchHHHHHHHHHHHHHHhccCCCCchh
Confidence 4455566665555556677888999999998888777777665411111111111111122222211 1112222 23
Q ss_pred HHHHHHHHHHhCcchHHHHH
Q 004748 194 LRTVLEAMEVVGILDYGLAK 213 (732)
Q Consensus 194 L~~vl~AL~~lg~L~~~l~~ 213 (732)
-++.+..|..+|.--+.++.
T Consensus 216 raEAv~LLl~lg~p~del~~ 235 (636)
T KOG2346|consen 216 RAEAVVLLLQLGVPVDELKA 235 (636)
T ss_pred HHHHHHHHHhcCCChHHHHH
Confidence 46777777777776555543
No 66
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=45.73 E-value=3.9e+02 Score=28.20 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=16.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH
Q 004748 25 PLTAPDLRLLISRLEFHSLQIKSK 48 (732)
Q Consensus 25 ~l~~~dl~~~i~~l~~~~~~~k~~ 48 (732)
.++.++|...+....+=..++|.+
T Consensus 119 ~~~~~~l~~~l~ea~~mL~emr~r 142 (264)
T PF06008_consen 119 QLPSEDLQRALAEAQRMLEEMRKR 142 (264)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 444568887777777777776655
No 67
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.11 E-value=2.7e+02 Score=33.51 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=29.2
Q ss_pred HHHhhcccCCChHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHH
Q 004748 581 KVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEE 624 (732)
Q Consensus 581 ~l~~~W~~vLp~~vy~~~ig~Lv~~v~~~ii~~Il~l~DIs~~e 624 (732)
+++..|.+--+.+.|.+-+-..|..+.+..+...... +|+...
T Consensus 581 ~lss~~~pd~~~s~YmeelQ~fVlrf~s~~~s~f~~s-~~~~~~ 623 (797)
T KOG2211|consen 581 NLSSKWTPDEYVSWYMEELQLFVLRFLSGLVSSFNSS-VISRGQ 623 (797)
T ss_pred ccccccCCCcchhHHHHHHHHHHHHHHHHHHHhccHH-Hhhccc
Confidence 4667788888888888877777777777776654432 455554
No 68
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=44.31 E-value=2.3e+02 Score=30.88 Aligned_cols=89 Identities=12% Similarity=0.195 Sum_probs=60.2
Q ss_pred hhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 004748 64 FSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELL-------ELVRAIVEIGERLKGVKE 136 (732)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~-------~~l~~l~~~~~~L~~~~~ 136 (732)
++..+.+....-.+..+++.+++-- +|..-+++..-++...+++|+..-.+.+ .+..+..++...- .+.
T Consensus 222 ~~Lvs~Le~eL~~iqaqL~tvks~m--~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~~qaAefq~l~--lE~ 297 (372)
T COG3524 222 MSLVSKLEDELIVIQAQLDTVKSVM--NPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLSNQAAEFQRLY--LEN 297 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHH--HHH
Confidence 3445555666667888888888874 1345688899999999999997655544 2334444443332 233
Q ss_pred HhhcCcHHHHHHHHHHHHHH
Q 004748 137 ALRDGRLRFAAEELRELKKD 156 (732)
Q Consensus 137 ~l~~~~~~~Aa~~Le~~~~~ 156 (732)
-+.++.|..|+..||.++-.
T Consensus 298 ~fAekay~AAl~SlEsArie 317 (372)
T COG3524 298 TFAEKAYAAALTSLESARIE 317 (372)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 46888899999999877654
No 69
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=44.09 E-value=6.1e+02 Score=29.99 Aligned_cols=92 Identities=10% Similarity=0.146 Sum_probs=46.2
Q ss_pred CChhhHHHHHHHHHHHHHHh--cccCCCchHHHhhhhhhHHHHHHHHHhhcccCCCC--ChhhhhhHHHHHHHHHHHH--
Q 004748 264 VDGKTIYSGIIQVVKFIHKR--ICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPE--DASKLADFQKIIDHTSEFE-- 337 (732)
Q Consensus 264 ~~~~~v~~~l~~v~~FL~~~--L~~~~~~l~~~lg~~i~p~ls~~lI~~~L~~aIP~--~~~~l~~F~~vi~~~~~Fe-- 337 (732)
++...++++...|-.-+.+- +|..|..++..|.. .+.+.++.+..+. +.++.+- ..|+..++.+-
T Consensus 466 ~s~~~L~~rf~~v~~~~r~~~l~~~~~~g~~~~~~s--------~~~S~l~~~~~~~~~~~~~~d~-~~ilarae~~l~~ 536 (582)
T PF09731_consen 466 PSEAQLRNRFERVAPEVRRASLVPPEGAGLLGHLLS--------YLFSLLLFRPKGGEVDPEGDDV-ESILARAEYYLER 536 (582)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH--------HHHheeeeecCCCCCCCCCCCH-HHHHHHHHHHHHC
Confidence 34455555544443333332 43455555555444 4444444443332 1233333 35777776653
Q ss_pred ----HHHHHcccccCCCccchhHhHHHHhHHHHHHHhhhHH
Q 004748 338 ----AALKEMMFISASDNKDARLSNFAENVEVHFASRKKTE 374 (732)
Q Consensus 338 ----~~L~~lgf~~~~~~~~~~L~~~v~~v~~~f~~krr~~ 374 (732)
.+++++ ..|..|...+-.-|+..-|..
T Consensus 537 gdL~~A~~~~----------~~L~g~~~~~a~dW~~~ar~~ 567 (582)
T PF09731_consen 537 GDLDKAAREL----------NQLKGWARKLAADWLKEARRR 567 (582)
T ss_pred CCHHHHHHHH----------HhCchHHHHHHHHHHHHHHHH
Confidence 334544 246667777777777654443
No 70
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.42 E-value=5.2e+02 Score=34.07 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=44.5
Q ss_pred HhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHH
Q 004748 72 SRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKK-ELLELVRAIVEIGERLKGVKEALRDGRLRFAAEEL 150 (732)
Q Consensus 72 ~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~-~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L 150 (732)
.++.++..+|..+...+.+ .+......+...+..++.... ....+.++++.+...+...+..+++.+|-.|-...
T Consensus 1028 ~~l~el~~eI~~l~~~~~~----~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ry 1103 (1311)
T TIGR00606 1028 NELKEVEEELKQHLKEMGQ----MQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKY 1103 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence 3344444444444444322 122333444444445544322 33456678888888888888888776666665555
Q ss_pred HHHHHHhh
Q 004748 151 RELKKDLR 158 (732)
Q Consensus 151 e~~~~~l~ 158 (732)
.++.-.+.
T Consensus 1104 rka~i~~~ 1111 (1311)
T TIGR00606 1104 REMMIVMR 1111 (1311)
T ss_pred HHHHHHHH
Confidence 54443333
No 71
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=43.34 E-value=4.1e+02 Score=28.39 Aligned_cols=110 Identities=10% Similarity=0.100 Sum_probs=60.3
Q ss_pred hhhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHH-------------HHHHHHHHhhhh--h-hhhhhhhhhH-------
Q 004748 13 LLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIK-------------SKVQSYIASHHQ--D-FASLFSLCND------- 69 (732)
Q Consensus 13 ~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~~~k-------------~~v~~~i~~~y~--~-f~~~~~~~~~------- 69 (732)
+|-+..+.||..- +.+.....-+.+..+++|++ .-+|+++.+.-- + --+..++.-.
T Consensus 31 ll~~~~~~~~~~d-~~~~~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekv 109 (338)
T KOG3647|consen 31 LLTSPGQNEADND-EEDQRDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKV 109 (338)
T ss_pred HHhCcCcCCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 4444444455543 33455555566666666665 346777765421 1 1111222222
Q ss_pred HHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 70 TVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIV 125 (732)
Q Consensus 70 ~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~ 125 (732)
+-..+.++...++.....+++ |-++.-..-+++..-+.|++.++.=++.|+.++
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnn--vasdea~L~~Kierrk~ElEr~rkRle~LqsiR 163 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNN--VASDEAALGSKIERRKAELERTRKRLEALQSIR 163 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 224555666666666666655 555555666667777777777777666666555
No 72
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=42.44 E-value=6.2e+02 Score=29.59 Aligned_cols=134 Identities=16% Similarity=0.147 Sum_probs=75.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHH
Q 004748 28 APDLRLLISRLEFHSLQIKSKVQSYIASH-------HQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEI 100 (732)
Q Consensus 28 ~~dl~~~i~~l~~~~~~~k~~v~~~i~~~-------y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~ 100 (732)
-|.|+.++.-+..++.+++.+++-..... -.-|....+...|+++++..+++.|.....-+.- -+-+....
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~--q~Ee~skL 238 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSR--QQEENSKL 238 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 46888888888999998888887443322 1223344666778888888887777665544211 11133333
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCCCCC
Q 004748 101 IDEVSAKMKEARV----KKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENA 164 (732)
Q Consensus 101 ~~~~~~l~~el~~----~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~~~~ 164 (732)
++++..+++++++ ++.+-+.|......+..+..= .-=-+.+|.+-+..+.+++..|+......
T Consensus 239 lsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE-~~EleDkyAE~m~~~~EaeeELk~lrs~~ 305 (596)
T KOG4360|consen 239 LSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAE-LEELEDKYAECMQMLHEAEEELKCLRSCD 305 (596)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3443333333332 222222222222222222211 11245678888899999999998885444
No 73
>PTZ00464 SNF-7-like protein; Provisional
Probab=42.17 E-value=4.1e+02 Score=27.43 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004748 29 PDLRLLISRLEFHSLQIKSKVQSYIAS 55 (732)
Q Consensus 29 ~dl~~~i~~l~~~~~~~k~~v~~~i~~ 55 (732)
+.+...+.++..|.+.+..++. .|..
T Consensus 14 ~t~~d~~~~l~~r~~~l~kKi~-~ld~ 39 (211)
T PTZ00464 14 PTLEDASKRIGGRSEVVDARIN-KIDA 39 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3566666777777777766663 3543
No 74
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=41.94 E-value=2.6e+02 Score=25.14 Aligned_cols=79 Identities=14% Similarity=0.200 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh------hhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHH
Q 004748 42 SLQIKSKVQSYIASHHQDFASL------FSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKK 115 (732)
Q Consensus 42 ~~~~k~~v~~~i~~~y~~f~~~------~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~ 115 (732)
+-+-+...|...+.-+..|..+ -+.|..+...-.+++++|-.+.+.+.+...+.++-..+.+++...++--..+
T Consensus 11 ~Qe~Ra~~Y~~~~~gf~~yl~~~~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ~~Ek~KL~lT 90 (97)
T PF14966_consen 11 LQERRAQLYNRFEEGFKKYLRSGPEEAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQEQEKEKLELT 90 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888777755 3448888888999999999999999743456677777878777666554544
Q ss_pred HHHHH
Q 004748 116 ELLEL 120 (732)
Q Consensus 116 ~~~~~ 120 (732)
..+++
T Consensus 91 ~~lQ~ 95 (97)
T PF14966_consen 91 AKLQV 95 (97)
T ss_pred HHHHh
Confidence 44443
No 75
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.23 E-value=2.4e+02 Score=31.16 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=55.4
Q ss_pred hhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004748 62 SLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDG 141 (732)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~ 141 (732)
.......++..+|+.++.+|......|+. -+.+....+.++..-+.+.+..+......+........--...+.--+.
T Consensus 5 ~GL~KL~et~~~V~~m~~~L~~~~~~L~~--k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~ 82 (344)
T PF12777_consen 5 NGLDKLKETEEQVEEMQEELEEKQPELEE--KQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEE 82 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777888888888877777644 2223344444443222222223322222222222222211222333456
Q ss_pred cHHHHHHHHHHHHHHhhcCCCCCchhHHHH
Q 004748 142 RLRFAAEELRELKKDLRVGDENASEPLVYG 171 (732)
Q Consensus 142 ~~~~Aa~~Le~~~~~l~~~~~~~~~~~i~~ 171 (732)
++..|.-.|++++.+++.+. +.+|.+
T Consensus 83 ~L~~a~P~L~~A~~al~~l~----k~di~E 108 (344)
T PF12777_consen 83 ELAEAEPALEEAQEALKSLD----KSDISE 108 (344)
T ss_dssp HHHHHHHHHHHHHHHHHCS-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC----HHHHHH
Confidence 78888889999999999885 555554
No 76
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.97 E-value=2.4e+02 Score=34.84 Aligned_cols=135 Identities=11% Similarity=0.122 Sum_probs=90.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHH-----HHhhhcCCcccchHHH
Q 004748 25 PLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSD-----ILGLISYRPIDKEVKE 99 (732)
Q Consensus 25 ~l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~-----l~~~i~~~~~~~~l~~ 99 (732)
-.+.+||..-|.-|++..+-=|..=..+++..+..|..-.....+++.+.+....+.+. +-..|++. .+.=.-
T Consensus 183 ~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~l~n~i~~~--~s~ad~ 260 (934)
T KOG2347|consen 183 DTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTTKLENCIKNS--TSRADL 260 (934)
T ss_pred hccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHh--hhHHHH
Confidence 35788999999999888877777777788889999999888888888888774333221 22222220 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCC
Q 004748 100 IIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (732)
Q Consensus 100 ~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~ 161 (732)
+-..+-.=+-.....+.++.++...+-+=-....++..++.|+|..+.+-=++++...-...
T Consensus 261 iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~~~t~ 322 (934)
T KOG2347|consen 261 IFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLFGKTE 322 (934)
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhhcccc
Confidence 11112222233455667777777777777777888999999999999998888887755543
No 77
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.80 E-value=2.7e+02 Score=29.81 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=19.6
Q ss_pred hHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHH
Q 004748 68 NDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVK 114 (732)
Q Consensus 68 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~ 114 (732)
.++..+++++..+++.+.+.+.+ .+.++...-.+++.++++|+..
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~--~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDE--LQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433 2333333444444444444433
No 78
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=40.12 E-value=5.3e+02 Score=28.19 Aligned_cols=130 Identities=13% Similarity=0.134 Sum_probs=74.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH--hhhhh-hhhh----hhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHH
Q 004748 28 APDLRLLISRLEFHSLQIKSKVQSYIA--SHHQD-FASL----FSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEI 100 (732)
Q Consensus 28 ~~dl~~~i~~l~~~~~~~k~~v~~~i~--~~y~~-f~~~----~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~ 100 (732)
-+.|+.++..|..+...++.+.+..-. ..|.+ -.-+ .....+...++..++.+|..-..-... -+.+|-..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~r--QQEEIt~L 239 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRR--QQEEITSL 239 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 368999999999999999999885442 22221 1111 222344445555555555444333211 12244444
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcC
Q 004748 101 IDEVSAKMKEA----RVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVG 160 (732)
Q Consensus 101 ~~~~~~l~~el----~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~ 160 (732)
.+++..+.+.+ .+|+.+...|...++.+..|..= -.=-..+|.+-...|.+++..++..
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE-L~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAE-LQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444433333 35666666666667777766332 2223457888888888888777654
No 79
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=39.96 E-value=2.1e+02 Score=26.31 Aligned_cols=60 Identities=13% Similarity=0.178 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcC
Q 004748 31 LRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISY 90 (732)
Q Consensus 31 l~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 90 (732)
+......|..++.+++..+..+-.+.-..=.+.-++..+++.++..+...+..++..+++
T Consensus 6 ~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVse 65 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSE 65 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 455667777888888888875555544444555677777777777777777777777644
No 80
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=39.61 E-value=1.3e+02 Score=24.05 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=32.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 004748 27 TAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASL 63 (732)
Q Consensus 27 ~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~ 63 (732)
.+.-+.+.|+.|..+.++=|.|+.+-|++.|...+..
T Consensus 5 ~~~~~d~yI~~Lk~kLd~Kk~Eil~~ln~EY~kiLk~ 41 (56)
T PF08112_consen 5 DKSTIDKYISILKSKLDEKKSEILSNLNMEYEKILKQ 41 (56)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999999999877654
No 81
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=39.51 E-value=3.5e+02 Score=25.87 Aligned_cols=100 Identities=15% Similarity=0.267 Sum_probs=77.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHH
Q 004748 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAK 107 (732)
Q Consensus 28 ~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l 107 (732)
.+.++..-.++...+.++=.+=+.-.++.-..|......-.+...++.++++.+...+..|.. -+.+|+..-.+-
T Consensus 42 ~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~--~~~eL~~L~~~s--- 116 (142)
T PF04048_consen 42 YQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGC--RREELKELWQRS--- 116 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHH---
Confidence 448888888888888888777788888888889999999999999999999999999999977 344555555443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 108 MKEARVKKELLELVRAIVEIGERLKG 133 (732)
Q Consensus 108 ~~el~~~~~~~~~l~~l~~~~~~L~~ 133 (732)
.+..+.=.++..++.|+.+-..|++
T Consensus 117 -~~~~~mi~iL~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 117 -QEYKEMIEILDQIEELRQVPDKIES 141 (142)
T ss_pred -HHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 4455566677777888887776653
No 82
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=38.72 E-value=2.6e+02 Score=25.72 Aligned_cols=87 Identities=23% Similarity=0.179 Sum_probs=64.6
Q ss_pred HhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCcHHHHHH
Q 004748 72 SRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLEL---VRAIVEIGERLKGVKEALRDGRLRFAAE 148 (732)
Q Consensus 72 ~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~---l~~l~~~~~~L~~~~~~l~~~~~~~Aa~ 148 (732)
..++.+.+.++.+...|++ .+-..|-....++.+.-+.+....+. -..+..++..|.....++..++-..|+.
T Consensus 23 ~~~~~i~~~l~~i~~~i~~----~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~~dk~~~l~ 98 (121)
T PF14276_consen 23 NSTDSIEEQLEQIEEAIEN----EDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEAKDKSESLA 98 (121)
T ss_pred hHHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455566666666666544 35566666777777777766665433 3567788899999999999999999999
Q ss_pred HHHHHHHHhhcCCC
Q 004748 149 ELRELKKDLRVGDE 162 (732)
Q Consensus 149 ~Le~~~~~l~~~~~ 162 (732)
.|..++..++.++.
T Consensus 99 el~~lk~~i~~i~~ 112 (121)
T PF14276_consen 99 ELAELKELIEHIPE 112 (121)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888763
No 83
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=38.52 E-value=3.9e+02 Score=35.98 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHH
Q 004748 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM 108 (732)
Q Consensus 29 ~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~ 108 (732)
.++...|..|...+..+|.+..+.....+.=-...-.......++++.+..+++.++..+.+ .+..+.....++..|+
T Consensus 801 ~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~--~~~~~~~le~k~~eL~ 878 (1822)
T KOG4674|consen 801 DKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDS--VSTNIAKLEIKLSELE 878 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 36677888888888888888776665554433333445777777788888888777777755 5566777777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 004748 109 KEARVKKELLELVRA 123 (732)
Q Consensus 109 ~el~~~~~~~~~l~~ 123 (732)
++|+....=...+.+
T Consensus 879 k~l~~~~~~~~~l~~ 893 (1822)
T KOG4674|consen 879 KRLKSAKTQLLNLDS 893 (1822)
T ss_pred HHHHHhHHHHhhccc
Confidence 777655544444443
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=38.46 E-value=5.3e+02 Score=27.65 Aligned_cols=83 Identities=12% Similarity=0.189 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHH
Q 004748 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQ-DFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSA 106 (732)
Q Consensus 28 ~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~-~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~ 106 (732)
.+||...|..+..+-+.+=..-..-+...|. .+..+...+......+..++.++..+...|.+ .+.++...-..-..
T Consensus 164 ~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~--l~~el~~l~~~~~~ 241 (312)
T PF00038_consen 164 SSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQS--LQAELESLRAKNAS 241 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhH--hhhhhhccccchhh
Confidence 4589988888877766555555555555553 34444444545555555666666666666543 33334433333444
Q ss_pred HHHHHH
Q 004748 107 KMKEAR 112 (732)
Q Consensus 107 l~~el~ 112 (732)
|.+++.
T Consensus 242 Le~~l~ 247 (312)
T PF00038_consen 242 LERQLR 247 (312)
T ss_dssp HHHHHH
T ss_pred hhhhHH
Confidence 444443
No 85
>PRK11637 AmiB activator; Provisional
Probab=37.47 E-value=6.1e+02 Score=28.75 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 004748 28 APDLRLLISRLEFHSLQIKSKVQS 51 (732)
Q Consensus 28 ~~dl~~~i~~l~~~~~~~k~~v~~ 51 (732)
..++...++.+..++.+++.++.+
T Consensus 42 ~~~~~~~l~~l~~qi~~~~~~i~~ 65 (428)
T PRK11637 42 ASDNRDQLKSIQQDIAAKEKSVRQ 65 (428)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888877774
No 86
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=37.19 E-value=5.3e+02 Score=27.33 Aligned_cols=10 Identities=20% Similarity=0.405 Sum_probs=5.4
Q ss_pred hHHHHHHHHH
Q 004748 30 DLRLLISRLE 39 (732)
Q Consensus 30 dl~~~i~~l~ 39 (732)
++...++.+.
T Consensus 131 ~l~~ll~~~~ 140 (291)
T TIGR00996 131 EIDDLLGSLT 140 (291)
T ss_pred cHHHHHHHHH
Confidence 5555555544
No 87
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.46 E-value=5.8e+02 Score=29.57 Aligned_cols=121 Identities=16% Similarity=0.277 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMK 109 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~ 109 (732)
.+..++++++.....+...|.. +..++.++...+..-+....+...+....+.+...+ ..+-..+..+..+..
T Consensus 278 e~~~~i~~l~~~l~~l~~~~~~-~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~------~~~~~~~~~~~~~~e 350 (503)
T KOG2273|consen 278 EKKEKIDKLEQQLKKLSKQVQR-LVKRRRELASNLAELGKALAQLSALEGETDELSEAL------SGLAKVIESLSKLLE 350 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH------HHHHHHHHHHHHHHH
Confidence 4556666666666666666655 666666666665555555555544444322222221 112223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Q 004748 110 EARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRV 159 (732)
Q Consensus 110 el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~ 159 (732)
+....+......+.+.++-+.++.++..++++.- |...+..++..+..
T Consensus 351 ~~~~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~--~~~~~~~~~~~~~~ 398 (503)
T KOG2273|consen 351 KLTAEKDSKKLAEQLREYIRYLESVKSLFEQRSK--ALQKLQEAQRELSS 398 (503)
T ss_pred HhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhh
Confidence 3312233333455555555555555554444322 44444444444433
No 88
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=36.37 E-value=4.4e+02 Score=26.11 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQ 50 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~ 50 (732)
++...+.++..+..++...+.
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~ 105 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQ 105 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 89
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=35.76 E-value=8.6e+02 Score=31.08 Aligned_cols=111 Identities=19% Similarity=0.285 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----hhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHH-
Q 004748 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFAS-----LFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIID- 102 (732)
Q Consensus 29 ~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~-----~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~- 102 (732)
|++...++ +.. ++.+.-.+.+...|.+|+. .++-|-..-... =...|+..++.. |-+.+-.+.-.
T Consensus 938 p~~~~ifd-l~~---~~s~~~~s~is~~yKnFLne~ViPvLEeCl~aL~~n--n~~~L~kaLA~F---P~d~qWSaFNs~ 1008 (1439)
T PF12252_consen 938 PDLEGIFD-LQH---RFSGVEDSKISQEYKNFLNEKVIPVLEECLNALREN--NMDMLQKALAAF---PSDKQWSAFNSE 1008 (1439)
T ss_pred chHHhHHH-HHH---HhhhhhhccccHHHHHHHHhccHHHHHHHHHHHHhc--CHHHHHHHHHhC---CCcccchhcCcH
Confidence 45555555 433 3444555788888888864 355443322221 112333333443 33432222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 004748 103 EVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRE 152 (732)
Q Consensus 103 ~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~ 152 (732)
+....|.|-...++ +++.-.-+. .|.+-+.|++.+++..|++.|+.
T Consensus 1009 EA~~AK~QMDaIKq---mIekKv~L~-~L~qCqdALeKqnIa~AL~ALn~ 1054 (1439)
T PF12252_consen 1009 EARQAKAQMDAIKQ---MIEKKVVLQ-ALTQCQDALEKQNIAGALQALNN 1054 (1439)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhc
Confidence 11222233322222 223322222 88889999999999999988864
No 90
>PRK04863 mukB cell division protein MukB; Provisional
Probab=34.89 E-value=7.4e+02 Score=33.16 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=38.0
Q ss_pred HhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCcHHHHHHHH
Q 004748 72 SRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELV-RAIVEIGERLKGVKEALRDGRLRFAAEEL 150 (732)
Q Consensus 72 ~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l-~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L 150 (732)
.+...+..++..+...+++ ....+...-.++..+..+++..+.-+..+ .++.++.+.++..+. .-..|..++..+
T Consensus 348 ~ei~~l~~~LeELee~Lee--~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~--el~q~qq~i~~L 423 (1486)
T PRK04863 348 EKIERYQADLEELEERLEE--QNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT--RAIQYQQAVQAL 423 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3334444444444444433 33334444444444444444333333333 333444444444444 234455666667
Q ss_pred HHHHHHhh
Q 004748 151 RELKKDLR 158 (732)
Q Consensus 151 e~~~~~l~ 158 (732)
+.++..+.
T Consensus 424 e~~~~~~~ 431 (1486)
T PRK04863 424 ERAKQLCG 431 (1486)
T ss_pred HHHHHHhC
Confidence 77776665
No 91
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=34.67 E-value=3.4e+02 Score=34.79 Aligned_cols=126 Identities=16% Similarity=0.208 Sum_probs=71.4
Q ss_pred CCCCCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHH
Q 004748 21 DQTAPLTAP--DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVK 98 (732)
Q Consensus 21 ~~~~~l~~~--dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~ 98 (732)
..|.++.++ +++..+.-...++.+.++++. -.-+++--+.++.++...+++++++.+......+.. -...+.
T Consensus 472 ~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~----vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e--~~~~l~ 545 (1293)
T KOG0996|consen 472 QETEGIREEIEKLEKELMPLLKQVNEARSELD----VAESELDILLSRHETGLKKVEELKGKLLASSESLKE--KKTELD 545 (1293)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 344455544 666666666666666666654 223455666777888888888888888886666543 233444
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHh----hcCcHHHHHHHHHH
Q 004748 99 EIIDEVSAKMKEARVKK--------ELLELVRAIVEIGERLKGVKEAL----RDGRLRFAAEELRE 152 (732)
Q Consensus 99 ~~~~~~~~l~~el~~~~--------~~~~~l~~l~~~~~~L~~~~~~l----~~~~~~~Aa~~Le~ 152 (732)
+.-.++..++.|+.... ....+-.++....+++.++...+ .+++..+|+..+.+
T Consensus 546 ~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~ke 611 (1293)
T KOG0996|consen 546 DLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKE 611 (1293)
T ss_pred HHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 44444444444443222 12233344556667777766654 34444555554443
No 92
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=33.98 E-value=4e+02 Score=29.51 Aligned_cols=68 Identities=22% Similarity=0.216 Sum_probs=51.0
Q ss_pred HHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004748 70 TVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDG 141 (732)
Q Consensus 70 ~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~ 141 (732)
+..+++++...-+.|...|.+ .++....+++.++.+|.++.+.+.........+...|..+++.+.+.
T Consensus 5 ~~~kl~~~~~r~~el~~~L~~----p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~ 72 (363)
T COG0216 5 LLEKLESLLERYEELEALLSD----PEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEE 72 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcC----cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456667777777777777655 23445566888888888888888888888888888888888887754
No 93
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=33.90 E-value=2.9e+02 Score=23.26 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHH
Q 004748 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDT 70 (732)
Q Consensus 29 ~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~ 70 (732)
++|.+.|.||.++.-+.|+++++-...=-.+|..+..-|..+
T Consensus 5 ~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~t 46 (66)
T PF05082_consen 5 EELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKT 46 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 578999999999999999999988876444555544444333
No 94
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=33.83 E-value=3e+02 Score=30.38 Aligned_cols=81 Identities=11% Similarity=0.102 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------hhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFAS------LFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDE 103 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~------~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~ 103 (732)
-++..+.+++.+..+...++.++=+++-. +.+ ..+..+++..+..++..++..+.....+ ..-+++..-.+
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~-~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~--~~P~v~~l~~~ 250 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKV-FDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPE--QNPQVPSLQAR 250 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCCchHHHHHH
Confidence 57777888888888888888777665432 222 2334555556666666666665544333 12245555555
Q ss_pred HHHHHHHHHH
Q 004748 104 VSAKMKEARV 113 (732)
Q Consensus 104 ~~~l~~el~~ 113 (732)
+..++++++.
T Consensus 251 i~~l~~~i~~ 260 (362)
T TIGR01010 251 IKSLRKQIDE 260 (362)
T ss_pred HHHHHHHHHH
Confidence 6666666653
No 95
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.67 E-value=8.3e+02 Score=32.23 Aligned_cols=55 Identities=13% Similarity=0.110 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcC
Q 004748 106 AKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVG 160 (732)
Q Consensus 106 ~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~ 160 (732)
..++.+..|-..+.....+.++...|.+.+.-..+-++..--....++......+
T Consensus 1012 ~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l 1066 (1311)
T TIGR00606 1012 IQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLI 1066 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445666666777776666655555544444444444443333
No 96
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=32.71 E-value=4.8e+02 Score=25.47 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 004748 33 LLISRLEFHSLQIKSKVQSYIASH 56 (732)
Q Consensus 33 ~~i~~l~~~~~~~k~~v~~~i~~~ 56 (732)
..|..|+.+..++-+.|-..+.+=
T Consensus 52 ~~L~~LE~~a~~ia~svd~ll~~L 75 (149)
T PF10157_consen 52 AVLHDLERDAQAIAESVDSLLRSL 75 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888888877666543
No 97
>PRK03918 chromosome segregation protein; Provisional
Probab=32.69 E-value=5.4e+02 Score=31.96 Aligned_cols=9 Identities=22% Similarity=0.349 Sum_probs=5.0
Q ss_pred hHHHHHHHH
Q 004748 30 DLRLLISRL 38 (732)
Q Consensus 30 dl~~~i~~l 38 (732)
++...+.++
T Consensus 589 ~~~~~~~~l 597 (880)
T PRK03918 589 ELEERLKEL 597 (880)
T ss_pred HHHHHHHHh
Confidence 555555555
No 98
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.44 E-value=2e+02 Score=24.96 Aligned_cols=57 Identities=25% Similarity=0.335 Sum_probs=33.5
Q ss_pred hhhHHHHhHHHHHHhHHHHHhhhcCCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 66 LCNDTVSRTDEISTDLSDILGLISYRP-IDKEVKEIIDEVSAKMKEARVKKELLELVR 122 (732)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~l~~~~~~~~~l~~el~~~~~~~~~l~ 122 (732)
.+.|+...+.+++..++..++.|++.| +...+-+--.++..|+.+++..++++.-++
T Consensus 22 ~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 22 SSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554422 233455555667788888887777765444
No 99
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=32.16 E-value=2.4e+02 Score=27.68 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=44.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcC
Q 004748 24 APLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISY 90 (732)
Q Consensus 24 ~~l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 90 (732)
++-+-.++...|..|..++.+++.++. .+.+..... .+..+.+++..++.++..++..+..+|+.
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k-~l~~eL~~L-~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVK-SLEAELASL-SSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445777789999999999998887 344444433 23445667788888888888887777654
No 100
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=31.62 E-value=2.1e+02 Score=24.56 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQ 58 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~ 58 (732)
+....|++|..+...+|-+|| ++..+-.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~-fLee~l~ 31 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIY-FLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHH-HHHHHHH
Confidence 567889999999999999999 6666655
No 101
>PHA02562 46 endonuclease subunit; Provisional
Probab=30.90 E-value=5.8e+02 Score=29.77 Aligned_cols=96 Identities=6% Similarity=0.144 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHH
Q 004748 32 RLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEA 111 (732)
Q Consensus 32 ~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el 111 (732)
...+..+...+.+++.++. .+.....+.....+....+..+..++.+.+......|+ ....+...++.++
T Consensus 298 ~~~~~~l~d~i~~l~~~l~-~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~---------~~~~~~~~l~~ei 367 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLE-KLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLI---------TLVDKAKKVKAAI 367 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 4555566666666655554 44444444444444555555555555555555544443 3333444444444
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 004748 112 RVKKELL-ELVRAIVEIGERLKGVKEA 137 (732)
Q Consensus 112 ~~~~~~~-~~l~~l~~~~~~L~~~~~~ 137 (732)
...+... ...+.+.++...|++....
T Consensus 368 ~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 368 EELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 4333222 2334444444455544443
No 102
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=29.05 E-value=6.8e+02 Score=26.10 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 004748 31 LRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFS 65 (732)
Q Consensus 31 l~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~ 65 (732)
|..++..|+..+.+-+.+.-..|...+..+..-+.
T Consensus 97 L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~ 131 (247)
T PF06705_consen 97 LNDRIEALEEEIQEEKEERPQDIEELNQELVRELN 131 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44444444444444455554445444444444333
No 103
>PLN03188 kinesin-12 family protein; Provisional
Probab=28.96 E-value=1.2e+03 Score=30.39 Aligned_cols=101 Identities=25% Similarity=0.209 Sum_probs=59.5
Q ss_pred hhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccc----hHHHHHHHHHHHHHHH--------HHHHHH-------HHH
Q 004748 60 FASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDK----EVKEIIDEVSAKMKEA--------RVKKEL-------LEL 120 (732)
Q Consensus 60 f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~----~l~~~~~~~~~l~~el--------~~~~~~-------~~~ 120 (732)
|+.+-....+|..+=..++.-|++++..-..--+++ =+...++|+..|+-|- ++|+.+ .++
T Consensus 1116 ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaea 1195 (1320)
T PLN03188 1116 YADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEA 1195 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHH
Confidence 444555566666666666666776666532212222 2333444444443331 122222 345
Q ss_pred HHHHHHHHHHHHHHHHH--hhcCcHHHHHHHHHHHHHHhhcC
Q 004748 121 VRAIVEIGERLKGVKEA--LRDGRLRFAAEELRELKKDLRVG 160 (732)
Q Consensus 121 l~~l~~~~~~L~~~~~~--l~~~~~~~Aa~~Le~~~~~l~~~ 160 (732)
++...++--||.++++| +.++++..|-+--+++.+.++.+
T Consensus 1196 v~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~kl 1237 (1320)
T PLN03188 1196 VQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKL 1237 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777788888888 57888888888888887776665
No 104
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=28.80 E-value=5.5e+02 Score=25.82 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhhhhhhhhhHHHHhHHHHHHhHH
Q 004748 28 APDLRLLISRLEFHSLQIKSKVQSYIASHH------QDFASLFSLCNDTVSRTDEISTDLS 82 (732)
Q Consensus 28 ~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y------~~f~~~~~~~~~~~~~~~~~~~~~~ 82 (732)
.+.+...|.+++++..++|.+|...+.+.+ .++..+.....+.++.++++...+.
T Consensus 42 ~~~~~~~i~~lE~~aD~i~~~i~~~L~~~fitP~dRedi~~L~~~lD~I~d~i~~~a~~l~ 102 (214)
T PF01865_consen 42 VEELLEEIKELEHEADEIKREIREELYKSFITPFDREDILRLISSLDDIADYIEDAAKRLS 102 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS-SS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888899999999888888754 2344444445555554444444433
No 105
>PRK13658 hypothetical protein; Provisional
Probab=27.72 E-value=1.4e+02 Score=23.91 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Q 004748 124 IVEIGERLKGVKEALRDGRLRFAAEELRELKKDLR 158 (732)
Q Consensus 124 l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~ 158 (732)
.+.+-+|++.+-.-+..|+|..|++-||-++..|-
T Consensus 6 aq~~A~RIDTVLDILVAGdyHSAI~NLEILKaELL 40 (59)
T PRK13658 6 AQRVAERIDTVLDILVAGDYHSAIHNLEILKAELL 40 (59)
T ss_pred HHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 35567788888888999999999999998776553
No 106
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.53 E-value=5.2e+02 Score=24.25 Aligned_cols=105 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004748 62 SLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDG 141 (732)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~ 141 (732)
++.+..+.+.+++..+..++..++..+.. ....=..+..++..+.++.+..+....-+..+. .+-.--+.
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~--l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~--------~el~~l~~ 82 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELAR--LEAERDELREEIVKLMEENEELRALKKEVEELE--------QELEELQQ 82 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q ss_pred cHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhh
Q 004748 142 RLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFE 182 (732)
Q Consensus 142 ~~~~Aa~~Le~~~~~l~~~~~~~~~~~i~~~L~~~W~~lv~ 182 (732)
+|..+.+.+-+=....+.+ +.+|.. ++.-++..|.
T Consensus 83 ry~t~LellGEK~E~veEL-----~~Dv~D-lK~myr~Qi~ 117 (120)
T PF12325_consen 83 RYQTLLELLGEKSEEVEEL-----RADVQD-LKEMYREQID 117 (120)
T ss_pred HHHHHHHHhcchHHHHHHH-----HHHHHH-HHHHHHHHHH
No 107
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=26.71 E-value=2.6e+02 Score=24.08 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=14.7
Q ss_pred hhhhHHHHhHHHHHHhHHHHHhhh
Q 004748 65 SLCNDTVSRTDEISTDLSDILGLI 88 (732)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~l~~~i 88 (732)
+.-..+.+++++++..++++...+
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~ 34 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNL 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334455666677777776666664
No 108
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=26.37 E-value=6e+02 Score=27.87 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=54.1
Q ss_pred hhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 57 HQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKE 136 (732)
Q Consensus 57 y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~ 136 (732)
+.++-.-..-..-++.-+.++...+...+.++... +...+++ .+..++-+..|+ ..|...|.++++
T Consensus 75 ~~~~~~E~d~~~~l~~~v~d~~rri~~~kerL~e~-----~ee~~~e-------~~~k~~~v~~l~--e~I~~~l~~~E~ 140 (319)
T KOG0796|consen 75 ERDYGYEWDALEILERFVADVDRRIEKAKERLAET-----VEERSEE-------AARKAEKVHELE--EKIGKLLEKAEE 140 (319)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhhhH-------HHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 33444445556666666777777777777776541 1122222 222222222222 567788999999
Q ss_pred HhhcCcHHHHHHHHHHHHHHh
Q 004748 137 ALRDGRLRFAAEELRELKKDL 157 (732)
Q Consensus 137 ~l~~~~~~~Aa~~Le~~~~~l 157 (732)
+-.+|+..+|...+.+++.+-
T Consensus 141 LG~eG~Veeaq~~~~e~E~lk 161 (319)
T KOG0796|consen 141 LGEEGNVEEAQKAMKEVEELK 161 (319)
T ss_pred HhhcCCHHHHHHHHHHHHHHH
Confidence 999999999999988877763
No 109
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=26.35 E-value=7.7e+02 Score=27.73 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=14.5
Q ss_pred CChhhHHHHHHHHHHHHHHH
Q 004748 26 LTAPDLRLLISRLEFHSLQI 45 (732)
Q Consensus 26 l~~~dl~~~i~~l~~~~~~~ 45 (732)
.+-+||...+.|+.....+.
T Consensus 227 vsld~L~~~ltrL~~~~~~~ 246 (370)
T PLN03094 227 VSLDELVGICTRLAREMEAI 246 (370)
T ss_pred CCHHHHHHHHHHHHHHhhhc
Confidence 55677877888887777664
No 110
>PLN02372 violaxanthin de-epoxidase
Probab=26.34 E-value=6.7e+02 Score=28.57 Aligned_cols=23 Identities=22% Similarity=0.292 Sum_probs=15.9
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 004748 20 TDQTAPLTAPDLRLLISRLEFHSLQIKSKVQ 50 (732)
Q Consensus 20 ~~~~~~l~~~dl~~~i~~l~~~~~~~k~~v~ 50 (732)
|.|.+|| ++||...+++....|.
T Consensus 356 Cgpep~l--------~~~l~~~~e~~e~~i~ 378 (455)
T PLN02372 356 CGPEPPL--------LERLEKDVEEGEKTIV 378 (455)
T ss_pred CCCCchH--------HHHHHHHHHHHHHHHH
Confidence 5788886 6777777777666554
No 111
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=25.92 E-value=8e+02 Score=25.88 Aligned_cols=14 Identities=0% Similarity=-0.057 Sum_probs=5.4
Q ss_pred HHHHHHhHHHHHhh
Q 004748 74 TDEISTDLSDILGL 87 (732)
Q Consensus 74 ~~~~~~~~~~l~~~ 87 (732)
..+|..+++.++.+
T Consensus 91 ~~aL~~E~~~ak~r 104 (239)
T COG1579 91 LRALNIEIQIAKER 104 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 112
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.82 E-value=1.2e+03 Score=27.75 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=5.5
Q ss_pred hHhHHHHhHH
Q 004748 355 RLSNFAENVE 364 (732)
Q Consensus 355 ~L~~~v~~v~ 364 (732)
.|..|++.++
T Consensus 442 eL~~yi~~Le 451 (546)
T PF07888_consen 442 ELLEYIERLE 451 (546)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 113
>PF07373 CAMP_factor: CAMP factor (Cfa); InterPro: IPR010860 This family consists of several bacterial CAMP factor (Cfa) proteins, which seem to be specific to Streptococcus species. The CAMP reaction is a synergistic lysis of erythrocytes by the interaction of an extracellular protein (CAMP factor) produced by some streptococcal species with the Staphylococcus aureus sphingomyelinase C (beta-toxin) [].
Probab=25.62 E-value=7.9e+02 Score=25.71 Aligned_cols=56 Identities=11% Similarity=0.120 Sum_probs=35.7
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhhhhHHHHhH
Q 004748 19 LTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQ-DFASLFSLCNDTVSRT 74 (732)
Q Consensus 19 ~~~~~~~l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~-~f~~~~~~~~~~~~~~ 74 (732)
...|+..++..+-+..++.+..++.++++--.+-=.+.|. ++..++..+.++....
T Consensus 5 ~~~~~~~~~~~~a~~~~~~vn~~i~~L~~~q~~v~~~~~~~~I~~ll~ta~~l~~~l 61 (228)
T PF07373_consen 5 TSQPATNLSTSEAQQELQDVNARIAQLQSIQKSVKGSDYEKEINKLLKTAFELKQSL 61 (228)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999988763333333343 2333333333333333
No 114
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=25.18 E-value=5.8e+02 Score=29.97 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=18.4
Q ss_pred HHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHH
Q 004748 70 TVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEAR 112 (732)
Q Consensus 70 ~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~ 112 (732)
+...+..+..+|+..+..|+. +..++......+..|+.+|.
T Consensus 279 ~~~~l~s~~~ELe~ak~~L~~--~k~E~~~L~~~vesL~~ELe 319 (522)
T PF05701_consen 279 LQSSLASAKKELEEAKKELEK--AKEEASSLRASVESLRSELE 319 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555443 33334444444444444443
No 115
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=24.92 E-value=7.9e+02 Score=25.49 Aligned_cols=48 Identities=6% Similarity=0.100 Sum_probs=21.5
Q ss_pred HHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 004748 69 DTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELL 118 (732)
Q Consensus 69 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~ 118 (732)
..-..+.++...++.+...++. +...+..+..++..+.+....+...+
T Consensus 33 ~aE~e~~~l~rri~~lE~~le~--~eerL~~~~~kL~~~e~~~de~er~~ 80 (237)
T PF00261_consen 33 KAEAEVASLQRRIQLLEEELER--AEERLEEATEKLEEAEKRADESERAR 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHH--HHCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433 33344455555555555554444443
No 116
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=24.65 E-value=7.5e+02 Score=25.14 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=18.2
Q ss_pred CCCCCCChh-hHHHHHHHHHHHHHHHHHHH
Q 004748 21 DQTAPLTAP-DLRLLISRLEFHSLQIKSKV 49 (732)
Q Consensus 21 ~~~~~l~~~-dl~~~i~~l~~~~~~~k~~v 49 (732)
-|++|-.+- .|+.-++.|..|...+...|
T Consensus 21 ~~~~~~~AIl~Lk~~~~~L~krq~~Le~kI 50 (191)
T PTZ00446 21 NNDEIYKAILKNREAIDALEKKQVQVEKKI 50 (191)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455565554 67777777777666665555
No 117
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=24.61 E-value=3.3e+02 Score=23.81 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHcccccCCCccchhHhHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 004748 325 DFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQ 385 (732)
Q Consensus 325 ~F~~vi~~~~~Fe~~L~~lgf~~~~~~~~~~L~~~v~~v~~~f~~krr~~~L~~AR~ll~~ 385 (732)
.|+..++...+-...|..-..-- +..|..|-+.+. +.|.|+..|..||..|..
T Consensus 11 sfE~~l~eLE~IV~~LE~Gel~L-----e~sl~~~erG~~---L~k~c~~~L~~Ae~~v~~ 63 (81)
T COG1722 11 SFEEALAELEEIVESLESGELPL-----EEALKEFERGMA---LYKECQEKLQQAEQRVEK 63 (81)
T ss_pred hHHHHHHHHHHHHHHHHcCcccH-----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 78888887777777776432211 468888887766 789999999999987764
No 118
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=24.60 E-value=1.3e+03 Score=28.06 Aligned_cols=165 Identities=9% Similarity=0.123 Sum_probs=90.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh-------hhHHHHhHHHHHHhHHHHHhh-hcCCcccchHH
Q 004748 27 TAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSL-------CNDTVSRTDEISTDLSDILGL-ISYRPIDKEVK 98 (732)
Q Consensus 27 ~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~-------~~~~~~~~~~~~~~~~~l~~~-i~~~~~~~~l~ 98 (732)
+.+.++..=.++.+.+|.=|+|...++-.||.|.+..++. |..+++++..+......+-+. ...+|-..+..
T Consensus 18 svsEIr~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL~a~svA~tp~raeqn 97 (863)
T KOG2033|consen 18 SVSEIREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSLHANSVAKTPGRAEQN 97 (863)
T ss_pred CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcchhhcC
Confidence 4567888888899999999999999999999998776444 455555555555555444411 11111121222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh----cCCCCCchhHHHH---
Q 004748 99 EIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLR----VGDENASEPLVYG--- 171 (732)
Q Consensus 99 ~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~----~~~~~~~~~~i~~--- 171 (732)
++-..+.....++++ +-..=..+=-.++++++.+|....--+++.=. ..+.+ .++.
T Consensus 98 p~~e~~Yg~aaqVKy-------------Lv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLdsss----~ll~nfP 160 (863)
T KOG2033|consen 98 PAGEHLYGTAAQVKY-------------LVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDSSS----MLLKNFP 160 (863)
T ss_pred chhhHHHHHHHHHHH-------------HHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCCc----HHHhhcH
Confidence 222233332333332 22222224456789999999988766554433 22222 3332
Q ss_pred HHHHHHHHH--hhheeecC-------CCCCc---HHHHHHHHHHhCcchH
Q 004748 172 LLRKEWLVC--FEELTVDG-------LDGIE---LRTVLEAMEVVGILDY 209 (732)
Q Consensus 172 ~L~~~W~~l--v~~~tv~~-------~~~~~---L~~vl~AL~~lg~L~~ 209 (732)
.|.+.|.-. |+ .+|+. +.+.. -.|.+.|+..++..|.
T Consensus 161 ~l~~Qw~a~r~F~-stI~q~s~~~Lld~glsd~atvdaL~aiaLLdesdp 209 (863)
T KOG2033|consen 161 ALTNQWVATRPFH-STIEQQSCSTLLDIGLSDWATVDALAAIALLDESDP 209 (863)
T ss_pred HHHHHHHHHhhHH-HHHHHHHHHHHhCcchhhHHHHHHHHHHHHhccCCH
Confidence 577888743 22 11210 11222 2456677777777665
No 119
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=24.46 E-value=9.1e+02 Score=29.66 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=62.5
Q ss_pred HHHhhh---hhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 004748 52 YIASHH---QDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLE-LVRAIVEI 127 (732)
Q Consensus 52 ~i~~~y---~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~-~l~~l~~~ 127 (732)
.+...| ++.+.+.+.|---.-+++-.+.|+..+.-++|. +..+....++ ++..+++-.+ .=..+.++
T Consensus 325 ~LE~D~Q~A~DhLnLV~~AlR~QEKI~RYQ~Dl~Elt~RLEE---Q~~VVeeA~e------~~~e~e~r~e~~E~EvD~l 395 (1480)
T COG3096 325 DLEADYQAASDHLNLVQTALRQQEKIERYQADLEELTIRLEE---QNEVVEEANE------RQEENEARAEAAELEVDEL 395 (1480)
T ss_pred hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 444444 345555555555566777788888888888865 4444333333 2223332221 22346777
Q ss_pred HHHHHHHHHHhhc-----CcHHHHHHHHHHHHHHhhcC
Q 004748 128 GERLKGVKEALRD-----GRLRFAAEELRELKKDLRVG 160 (732)
Q Consensus 128 ~~~L~~~~~~l~~-----~~~~~Aa~~Le~~~~~l~~~ 160 (732)
...|..+++|++- -.|-.|+..|++++..+...
T Consensus 396 ksQLADYQQALD~QQTRAlQYQQAi~ALekAk~Lc~l~ 433 (1480)
T COG3096 396 KSQLADYQQALDVQQTRAIQYQQAIAALERAKELCHLP 433 (1480)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 7888888888754 35788999999999887655
No 120
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.89 E-value=1.1e+03 Score=26.65 Aligned_cols=78 Identities=8% Similarity=0.072 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hhhh---hhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHH
Q 004748 32 RLLISRLEFHSLQIKSKVQSYIASHHQD-----FASL---FSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDE 103 (732)
Q Consensus 32 ~~~i~~l~~~~~~~k~~v~~~i~~~y~~-----f~~~---~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~ 103 (732)
...+..+..+..+.+++..+.-. +|.. ..+. .....++..+..++..++..+.....+ -.-++...-.+
T Consensus 214 ~~~l~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~--~hP~v~~l~~~ 290 (444)
T TIGR03017 214 RARLNELSAQLVAAQAQVMDASS-KEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGP--NHPQYKRAQAE 290 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCC--CCcHHHHHHHH
Confidence 34566666666666666543322 2211 1111 222345667777777777777665432 23345555555
Q ss_pred HHHHHHHHH
Q 004748 104 VSAKMKEAR 112 (732)
Q Consensus 104 ~~~l~~el~ 112 (732)
+..++++++
T Consensus 291 i~~l~~~l~ 299 (444)
T TIGR03017 291 INSLKSQLN 299 (444)
T ss_pred HHHHHHHHH
Confidence 555555553
No 121
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=23.85 E-value=9.6e+02 Score=26.09 Aligned_cols=13 Identities=23% Similarity=-0.013 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 004748 31 LRLLISRLEFHSL 43 (732)
Q Consensus 31 l~~~i~~l~~~~~ 43 (732)
+-..|.+|..+.+
T Consensus 136 lvq~I~~L~k~le 148 (294)
T COG1340 136 LVQKIKELRKELE 148 (294)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
No 122
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=23.82 E-value=5.6e+02 Score=25.15 Aligned_cols=84 Identities=8% Similarity=0.120 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhH-HHHhHHHHHHhHHHHHhh---hcCCcccchHHHHHHHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCND-TVSRTDEISTDLSDILGL---ISYRPIDKEVKEIIDEVS 105 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~-~~~~~~~~~~~~~~l~~~---i~~~~~~~~l~~~~~~~~ 105 (732)
-+..--+.+...+..+.+.+.+.|..+-..+-+.+..... +.-.++.|++.--++... +.+ .++..++..+.|.+
T Consensus 31 aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e-~lQ~~vq~l~~E~q 109 (155)
T PF07464_consen 31 AIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQE-KLQSAVQSLVQESQ 109 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHH-HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4566667778888888888888888877777766554332 223333333322222211 222 24567788888888
Q ss_pred HHHHHHHHH
Q 004748 106 AKMKEARVK 114 (732)
Q Consensus 106 ~l~~el~~~ 114 (732)
++.+++..+
T Consensus 110 k~~k~v~~~ 118 (155)
T PF07464_consen 110 KLAKEVSEN 118 (155)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHHHHH
Confidence 888888665
No 123
>PRK01156 chromosome segregation protein; Provisional
Probab=23.78 E-value=7e+02 Score=31.22 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004748 97 VKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDG 141 (732)
Q Consensus 97 l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~ 141 (732)
+.....++..++++++..+....-++.+......+..++.++...
T Consensus 704 i~~l~~~~~~l~eel~~~~~~~~~l~~~~~~~~~l~~~r~~l~k~ 748 (895)
T PRK01156 704 IEILRTRINELSDRINDINETLESMKKIKKAIGDLKRLREAFDKS 748 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333334444455555444444444555555555555555555543
No 124
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.58 E-value=6.7e+02 Score=24.13 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=50.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccc-hHHHHHHHH
Q 004748 26 LTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDK-EVKEIIDEV 104 (732)
Q Consensus 26 l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-~l~~~~~~~ 104 (732)
++++.+..+.+.+..++.++..+-. +.=.+..++-.....+-.+++.+...+..++..++.+.-.. ..-....++
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~~~~----~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rri 82 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQENE----QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRI 82 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhH
Confidence 3444444444444444444333221 12234555555667777777777788887777776532111 122233345
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 004748 105 SAKMKEARVKKELL-ELVRAIVEIGERLK 132 (732)
Q Consensus 105 ~~l~~el~~~~~~~-~~l~~l~~~~~~L~ 132 (732)
..|..++..+..-+ .+.+.+++++...+
T Consensus 83 q~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 83 QLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 55555555444332 33344444433333
No 125
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=23.58 E-value=1.4e+03 Score=27.89 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=58.2
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHh
Q 004748 18 DLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQ-----------SYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILG 86 (732)
Q Consensus 18 ~~~~~~~~l~~~dl~~~i~~l~~~~~~~k~~v~-----------~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (732)
+-|+| .|-+.+||+.-+.-|+.+-..+-++++ .+=.+--.+-...-..++.+-.......+.+..+..
T Consensus 464 e~~~~-~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~ 542 (739)
T PF07111_consen 464 EQCPP-SPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEE 542 (739)
T ss_pred ccCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455 455788998866666666555555543 322222233333344456666666666666666666
Q ss_pred hhcCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 004748 87 LISYRPIDKEVKEIIDEVSAKMKEARVKKELL 118 (732)
Q Consensus 87 ~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~ 118 (732)
.++- ....++.+......+.+|+...+...
T Consensus 543 QL~~--Ar~~lqes~eea~~lR~EL~~QQ~~y 572 (739)
T PF07111_consen 543 QLEA--ARKSLQESTEEAAELRRELTQQQEVY 572 (739)
T ss_pred HHHH--HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544 45567777777778888887666554
No 126
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=23.57 E-value=1.7e+03 Score=29.00 Aligned_cols=125 Identities=12% Similarity=0.145 Sum_probs=71.5
Q ss_pred CCCCCCChhhHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHH
Q 004748 21 DQTAPLTAPDLRLLISRLE--FHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVK 98 (732)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~--~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~ 98 (732)
+|...+.+.|+..+|..+. .++..++.++ .-+...|..+...-+....+...+......+......++. .+.
T Consensus 218 ~~~~~~~~~~i~~W~~~~~~~~~~~~~r~~~-~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~-----~~~ 291 (1201)
T PF12128_consen 218 PPKSRLKKNDIDDWLRDIRASQGFEKVRPEF-DKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKE-----ELN 291 (1201)
T ss_pred chhhhcchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHH
Confidence 6788889999999999886 5778888888 4677778888887776665555544444444433333221 222
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCcHHHHHHHHH
Q 004748 99 EIIDEVSAKMKEA-----RVKKELLELVRAIVEIGERLKGVKEAL---RDGRLRFAAEELR 151 (732)
Q Consensus 99 ~~~~~~~~l~~el-----~~~~~~~~~l~~l~~~~~~L~~~~~~l---~~~~~~~Aa~~Le 151 (732)
..-.++..+.++. +++...-.+-..+..+...|+.++..- ...++...+..++
T Consensus 292 ~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~ 352 (1201)
T PF12128_consen 292 ELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVD 352 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 2222222222222 223444445566666666666666542 3334444444443
No 127
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=23.24 E-value=1.2e+03 Score=30.41 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASL-FSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM 108 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~-~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~ 108 (732)
.+...++.+...+..+++++- .|...|..|... +......+.+..++..++..+...+.. ..+...+..+++..++
T Consensus 310 ~~~~~~~~~~~~l~~~~~~L~-~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~--Lt~~~~di~~ky~~~~ 386 (1201)
T PF12128_consen 310 ELNKELSALNADLARIKSELD-EIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDL--LTSKHQDIESKYNKLK 386 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 455666666666666666665 667777777653 444444445555555555555444322 2334445555555444
Q ss_pred HHH
Q 004748 109 KEA 111 (732)
Q Consensus 109 ~el 111 (732)
+.+
T Consensus 387 ~~l 389 (1201)
T PF12128_consen 387 QKL 389 (1201)
T ss_pred HHH
Confidence 444
No 128
>PF11988 Dsl1_N: Retrograde transport protein Dsl1 N terminal; InterPro: IPR021875 Dsl1 is a peripheral membrane protein required for transport between the Golgi and the endoplasmic reticulum []. It is localised to the ER membrane, and in vitro it specifically binds to coatomer, the major component of the protein coat of COPI vesicles []. It is comprised primarily of alpha helical bundles []. It complexes with another subunit of the Dsl1p complex called Tip20 which forms heterodimers by pairing the N termini of each protein []. A central disorganised region between the N and C termini of Dsl1 contains binding sites for coatomer []. The C terminus of Dsl1 contains a binding site to the Sec39 subunit of the Dsl1p complex []. ; PDB: 3K8P_C 3ETV_A 3ETU_A.
Probab=23.22 E-value=1.1e+03 Score=26.38 Aligned_cols=221 Identities=17% Similarity=0.226 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCCCCCc-----hhHHHHHHHHHHHHHhhh
Q 004748 109 KEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENAS-----EPLVYGLLRKEWLVCFEE 183 (732)
Q Consensus 109 ~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~~~~~-----~~~i~~~L~~~W~~lv~~ 183 (732)
+|.+-.+++. .+.+++.+...|.+++.-++--++.-+--.|..+++.++..+.... +..|...++.-.-++|.+
T Consensus 39 ~e~~Ls~eL~-~l~~LK~is~Li~EfktN~ellElENCyYSLqnLrKKlk~n~~~lkqs~~FQqSvatYVDsLHl~Lv~k 117 (354)
T PF11988_consen 39 RESQLSKELH-DLNSLKTISSLIKEFKTNFELLELENCYYSLQNLRKKLKNNDSFLKQSFRFQQSVATYVDSLHLKLVSK 117 (354)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-CCHHCS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccHHhhcchhhhhhHHHHHHHHHHHHHHH
Confidence 4444455544 6677899999999999999999999999999999999998765531 233333344433333331
Q ss_pred e--------------------ee--cCCC-CCcHHHHHHHH-------------------HHhCcchHHHHHHHHHHHHH
Q 004748 184 L--------------------TV--DGLD-GIELRTVLEAM-------------------EVVGILDYGLAKVADLKIKY 221 (732)
Q Consensus 184 ~--------------------tv--~~~~-~~~L~~vl~AL-------------------~~lg~L~~~l~~l~~~L~~~ 221 (732)
+ +| +.+. ...-.+.+.-+ -.+|.+.+.+. ..++.
T Consensus 118 l~~ilt~~FW~I~~~si~F~~~I~~g~D~v~~~Yd~f~~f~~~~~fp~~~lD~~~WfI~dm~l~d~qe~Vr----~kL~~ 193 (354)
T PF11988_consen 118 LYEILTNKFWNITSNSISFNPKIEWGKDDVDFEYDTFMDFVKSQFFPQNVLDPESWFISDMSLGDLQEKVR----NKLNT 193 (354)
T ss_dssp HHHHHHCTTEEE-SSEEEE-SEEEETTTTEEEEHHHHHHHHHHHH-CCCS--TTSHHHHT-SSHHHHHHHH----HHHHH
T ss_pred HHHHHhccceeecCCeEEeccceeecCcceeeecHHHHHHHHHccCCCCCCCcccceeeecccchHHHHHH----HHHHH
Confidence 1 11 1110 01111111111 12333444443 23333
Q ss_pred hhhhhhcCCCCcccc-cccCCCCcc--ccc--ceeeeeccCCccccCCChhhHHHHHHHHHHHHHHhcccCC-CchHHHh
Q 004748 222 VISPAVSYGSPITFV-EELNPGPEK--MSE--AILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQN-GSWVRCF 295 (732)
Q Consensus 222 ii~P~i~~~~~~~~v-~~~~~~~~~--~~~--~~L~~~~~~~~k~~~~~~~~v~~~l~~v~~FL~~~L~~~~-~~l~~~l 295 (732)
|+.-.|.-......+ +.+-..+.. .++ ..|.+..+ ...+...+.+.......+..||.+.+...+ ..++..|
T Consensus 194 I~~~Yi~l~~v~~~iK~~iF~~~~~~~~~~~~~kL~~~~s--~~~g~~~~~~~i~Sf~~l~~Fl~~~ls~~d~~~l~~~L 271 (354)
T PF11988_consen 194 ILKDYIKLNSVIEMIKEFIFSDSKEFSYSDNNNKLSFKQS--SSNGQDKLQETIESFQNLVDFLLETLSPRDKNILLEKL 271 (354)
T ss_dssp HHHHHTS-HHHHHHHHCCTT-TTEEEEEETTTTEEEEEE----------HHHHHHHHHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCceEEEcCCCCeEEEEec--ccCCcchHHHHHHHHHHHHHHHHhccCHhHHHHHHHHh
Confidence 333322221110000 000001111 111 34665443 112334577888889999999999997543 4788999
Q ss_pred hhhhhHHHHHHHHHhhcccCCCCChhhhhhHHHHHHHHHHHHHHHHHc
Q 004748 296 GRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEM 343 (732)
Q Consensus 296 g~~i~p~ls~~lI~~~L~~aIP~~~~~l~~F~~vi~~~~~Fe~~L~~l 343 (732)
|..+.-++...+=.|- +.-+-.... .+-+.+..+...|..+
T Consensus 272 G~~i~tE~~K~vK~Na-s~il~~~~~------~lk~~v~~iN~~L~~L 312 (354)
T PF11988_consen 272 GPLISTELTKFVKQNA-SEILSNENN------PLKDLVLSINDSLKKL 312 (354)
T ss_dssp HHHHHHHHHHHHHHTH-HHHTSSTT-------CHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCH-HHHhcCCcc------hHHHHHHHHHHHHHHH
Confidence 9988888876554442 222211111 2334566676666655
No 129
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=23.12 E-value=9.2e+02 Score=25.59 Aligned_cols=73 Identities=11% Similarity=0.128 Sum_probs=45.5
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hhhhhhhhhhHHHHhHHHHHHhHHHHHhhhc
Q 004748 21 DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQ-----------DFASLFSLCNDTVSRTDEISTDLSDILGLIS 89 (732)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~-----------~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 89 (732)
||..+-..+..+..+-+...++.+....+.+.+..+.. .....+..+.|+..++-+-..+.+.+.....
T Consensus 124 ~p~~~~~~~~~~~~l~~~q~~v~~~~~~~R~~l~~~r~~~~~~~~~~~~~ll~~~~~a~Dl~E~~~as~~~y~~l~~~f~ 203 (284)
T PF12805_consen 124 DPDQHDDDEQLRIELAQQQIKVNEALEQARELLLRRRRSGRGKPSTYGRRLLLLFFEAVDLFERALASHYDYEELREQFK 203 (284)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhc
Confidence 56666566666666666777777776666666666522 3444466677777777666666666666554
Q ss_pred CCcc
Q 004748 90 YRPI 93 (732)
Q Consensus 90 ~~~~ 93 (732)
++++
T Consensus 204 ~~~~ 207 (284)
T PF12805_consen 204 HSDV 207 (284)
T ss_pred CChH
Confidence 4333
No 130
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=23.07 E-value=1.7e+02 Score=24.05 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=27.5
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 004748 20 TDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSY 52 (732)
Q Consensus 20 ~~~~~~l~~~dl~~~i~~l~~~~~~~k~~v~~~ 52 (732)
+-+=++||-++|..+|.-|..++.+++.++..-
T Consensus 15 g~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 15 GEDLSLLSVEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred CCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334578999999999999999999999887643
No 131
>PRK11637 AmiB activator; Provisional
Probab=23.06 E-value=6.2e+02 Score=28.72 Aligned_cols=44 Identities=7% Similarity=0.137 Sum_probs=22.5
Q ss_pred hHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHH
Q 004748 68 NDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARV 113 (732)
Q Consensus 68 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~ 113 (732)
+++..+.+++..++..+...|.+ .+.++.....++..+.+++..
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~--~~~~~~~~~~~l~~l~~qi~~ 86 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQ--QQQQRASLLAQLKKQEEAISQ 86 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666655555543 334444444444444444443
No 132
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=23.06 E-value=9.1e+02 Score=27.77 Aligned_cols=121 Identities=9% Similarity=0.037 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh------hhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHH
Q 004748 33 LLISRLEFHSLQIKSKVQSYIASHHQDFASL------FSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSA 106 (732)
Q Consensus 33 ~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~------~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~ 106 (732)
.-+++-+.|..+.+..+.++ ..++.-+-|. +...+.+..+..++..+++.+..-+. |..-.+...-.++..
T Consensus 249 ~ev~~Ae~rl~~Ar~aL~~f-Rn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~--p~sPqV~~l~~rI~a 325 (434)
T PRK15178 249 NDVKSAQENLGAARLELLKI-QHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGL--DQNPLIPRLSAKIKV 325 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCchhHHHHHHHH
Confidence 34455566666666666644 4444444444 44456666666666667776655422 345677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhcCcHHHHHHHHHHHHHH
Q 004748 107 KMKEARVKKELLELVRAIVEIGERLKGVKEA-----LRDGRLRFAAEELRELKKD 156 (732)
Q Consensus 107 l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~-----l~~~~~~~Aa~~Le~~~~~ 156 (732)
|++||+.-+.-+..-..-..++..+.+++.. +.++.|..|+..||.++..
T Consensus 326 Le~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~E 380 (434)
T PRK15178 326 LEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQ 380 (434)
T ss_pred HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777775443321000000223344444333 5666677777777765543
No 133
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.96 E-value=7.5e+02 Score=29.57 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQ 50 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~ 50 (732)
+++..++++..++.++++++-
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~e 446 (652)
T COG2433 426 KLEETVERLEEENSELKRELE 446 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443
No 134
>PF14906 DUF4495: Domain of unknown function (DUF4495)
Probab=22.94 E-value=1e+03 Score=26.13 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=47.7
Q ss_pred HHhccCCCCccchhhhh--hhhHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHh
Q 004748 548 EALDGADGFQNTHQIQQ--FESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRD 613 (732)
Q Consensus 548 ~~L~~a~gf~~~~~~~~--~e~~~~ai~q~~~~L~~l~~~W~~vLp~~vy~~~ig~Lv~~v~~~ii~~ 613 (732)
-+|.+|++-..-+.... .|+|..+|..=-+.+..++.--=.++|+..-++.++.+++.-+.-+..+
T Consensus 93 ~ILQDAeSh~W~d~k~FyEgERcSfsiQMW~yy~~glr~DLW~~lPpk~AQ~Ila~vL~eSL~~L~~R 160 (321)
T PF14906_consen 93 SILQDAESHHWDDPKPFYEGERCSFSIQMWHYYMCGLRHDLWTILPPKLAQRILAEVLEESLQLLASR 160 (321)
T ss_pred HHhhccccCCcccCCcccccCCCchhHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466776655443333 3788889988888888888776688999988888888888777655544
No 135
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=22.93 E-value=5.2e+02 Score=28.97 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=23.8
Q ss_pred hhHHHhhhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 004748 8 INVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKS 47 (732)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~~~k~ 47 (732)
|+|-|-+.+++-.-.-..|+. ||..-|.+|.+...+||-
T Consensus 15 d~iyek~~~s~~~s~~ekle~-dlk~~ikklq~~rdqikt 53 (548)
T COG5665 15 DDIYEKFQSTDNSSHREKLES-DLKREIKKLQKHRDQIKT 53 (548)
T ss_pred HHHHHHHhccCchhHHHHHhh-HHHHHHHHHHHHHHHHHH
Confidence 566777776665433334332 677777777776666664
No 136
>PTZ00464 SNF-7-like protein; Provisional
Probab=22.83 E-value=8.5e+02 Score=25.10 Aligned_cols=27 Identities=4% Similarity=-0.052 Sum_probs=20.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHH
Q 004748 26 LTAPDLRLLISRLEFHSLQIKSKVQSY 52 (732)
Q Consensus 26 l~~~dl~~~i~~l~~~~~~~k~~v~~~ 52 (732)
-....|+.+++.+..|+..+..++..+
T Consensus 18 d~~~~l~~r~~~l~kKi~~ld~E~~~a 44 (211)
T PTZ00464 18 DASKRIGGRSEVVDARINKIDAELMKL 44 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344588888999999988888775533
No 137
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=22.58 E-value=1.4e+03 Score=29.67 Aligned_cols=130 Identities=18% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHH
Q 004748 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAK 107 (732)
Q Consensus 28 ~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l 107 (732)
...+...++.+..+....+.++-+.+...-.++.......++...+...+..+++.+...++. ....+.+...++..+
T Consensus 353 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~--~~~~~~~~~~~~~~~ 430 (1163)
T COG1196 353 LAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER--LSERLEDLKEELKEL 430 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh--hcCcHHHHHHHHHHHHHHhhc
Q 004748 108 MKEARV-KKELLELVRAIVEIGERLKGVKEAL--RDGRLRFAAEELRELKKDLRV 159 (732)
Q Consensus 108 ~~el~~-~~~~~~~l~~l~~~~~~L~~~~~~l--~~~~~~~Aa~~Le~~~~~l~~ 159 (732)
..++.. ....-..-..+..+...+.+....+ -+.++..+-..+..+...++.
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (1163)
T COG1196 431 EAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSS 485 (1163)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 138
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.55 E-value=1.3e+03 Score=29.87 Aligned_cols=133 Identities=13% Similarity=0.118 Sum_probs=71.4
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hhHHHHhHHHHHHhHHHHHhhhcCCcccc-hH
Q 004748 23 TAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSL----CNDTVSRTDEISTDLSDILGLISYRPIDK-EV 97 (732)
Q Consensus 23 ~~~l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-~l 97 (732)
+..++.++|...+.....+..+++.+... .+++-.+-..+.+. ..+...+..++...+...... +.+... ..
T Consensus 99 ~~~~s~~~Leq~l~~~~~~L~~~q~~l~~-~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~--~~~l~~a~~ 175 (1109)
T PRK10929 99 PPNMSTDALEQEILQVSSQLLEKSRQAQQ-EQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTP--NTPLAQAQL 175 (1109)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCC--CCcccHHHH
Confidence 35667789999999999998888887774 33333232222222 233333333333333322211 111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Q 004748 98 KEIIDEVSAKMKEARVKKELLE---------------LVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLR 158 (732)
Q Consensus 98 ~~~~~~~~~l~~el~~~~~~~~---------------~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~ 158 (732)
...-.|...++.++++++..+. .-.++....+.+...+++++++|..+|-+.+++++..-+
T Consensus 176 ~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~ 251 (1109)
T PRK10929 176 TALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAE 251 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 1222233333334433333321 223455566777778888999999998888888877533
No 139
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.47 E-value=1.5e+03 Score=27.97 Aligned_cols=95 Identities=16% Similarity=0.244 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhhh---hhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCccc------------chHHHHHHHHHHHHHH
Q 004748 46 KSKVQSYIASHHQD---FASLFSLCNDTVSRTDEISTDLSDILGLISYRPID------------KEVKEIIDEVSAKMKE 110 (732)
Q Consensus 46 k~~v~~~i~~~y~~---f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~------------~~l~~~~~~~~~l~~e 110 (732)
|.++.+|++++-.+ ....-..-..+....+.|...++.|..+|.+-.+. ....-.+++.++|+++
T Consensus 415 rar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqar 494 (1118)
T KOG1029|consen 415 RARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQAR 494 (1118)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 56788888877654 22223334445555566666666666555441111 1222334566688888
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Q 004748 111 ARVKKELL-ELVRAIVEIGERLKGVKEALRD 140 (732)
Q Consensus 111 l~~~~~~~-~~l~~l~~~~~~L~~~~~~l~~ 140 (732)
|++.++.+ .+.-.=+.++..|.+.+.+..+
T Consensus 495 ikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~ 525 (1118)
T KOG1029|consen 495 IKELQEKLQKLAPEKQELNHQLKQKQSAHKE 525 (1118)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhhccC
Confidence 88776665 3444456677777777766533
No 140
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=22.46 E-value=1.7e+03 Score=28.39 Aligned_cols=27 Identities=7% Similarity=0.396 Sum_probs=14.5
Q ss_pred CCChhhhhhHHHHHHHHHHHHHHHHHc
Q 004748 317 PEDASKLADFQKIIDHTSEFEAALKEM 343 (732)
Q Consensus 317 P~~~~~l~~F~~vi~~~~~Fe~~L~~l 343 (732)
|.+..-+.+|..+.+.-....+.+.++
T Consensus 972 ~vN~~Ai~~~~~~~~~~~~l~~q~~dl 998 (1164)
T TIGR02169 972 PVNMLAIQEYEEVLKRLDELKEKRAKL 998 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666655555555554444
No 141
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=22.42 E-value=2e+02 Score=23.35 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=8.1
Q ss_pred hHHHHHHhHHHHHhhh
Q 004748 73 RTDEISTDLSDILGLI 88 (732)
Q Consensus 73 ~~~~~~~~~~~l~~~i 88 (732)
+++.|+.+++.|.++|
T Consensus 4 kid~Ls~dVq~L~~kv 19 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKV 19 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4455555555555543
No 142
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=22.31 E-value=5.4e+02 Score=25.19 Aligned_cols=56 Identities=11% Similarity=0.287 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhhhhhhhhh-----------hhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHH
Q 004748 47 SKVQSYIASHHQDFASLFS-----------LCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEV 104 (732)
Q Consensus 47 ~~v~~~i~~~y~~f~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~ 104 (732)
-++..+|..+|.+|..-+. .+++.-..++.|.+.+..+.+..|. +.+++-+..+++
T Consensus 43 ne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~--Vs~d~Npf~s~~ 109 (157)
T COG3352 43 NEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYEL--VSRDFNPFMSKT 109 (157)
T ss_pred hHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHhhh
Confidence 4567888888887766544 3555555666666666666666554 555555555543
No 143
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=22.28 E-value=5.8e+02 Score=28.79 Aligned_cols=115 Identities=11% Similarity=0.128 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHH
Q 004748 34 LISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARV 113 (732)
Q Consensus 34 ~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~ 113 (732)
.|..+..+..++..+..+. ..+|.+-.|-+..+. .+.+++...++.-...+.. ....+...+..+...+.++++.
T Consensus 255 ~i~~l~~~l~~le~~l~~l-~~~y~~~hP~v~~l~---~~i~~l~~~l~~e~~~~~~-~~~~~~~~~~~~~~~l~~~l~~ 329 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAEL-SQRLGPNHPQYKRAQ---AEINSLKSQLNAEIKKVTS-SVGTNSRILKQREAELREALEN 329 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhCCCCcHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777744 567877666666533 4444555555444333322 1233344444455555555553
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 004748 114 KKEL-LELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKK 155 (732)
Q Consensus 114 ~~~~-~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~ 155 (732)
.+.- ...-..-.++...-.+++ ..++.|......+++++-
T Consensus 330 ~~~~~~~l~~~~~~~~~L~r~~~--~~~~~y~~ll~r~~e~~l 370 (444)
T TIGR03017 330 QKAKVLELNRQRDEMSVLQRDVE--NAQRAYDAAMQRYTQTRI 370 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 3222 222222222222222222 355666777777766553
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.22 E-value=8.9e+02 Score=26.05 Aligned_cols=46 Identities=28% Similarity=0.244 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhcCcHHHHHHHHHHHH
Q 004748 109 KEARVKKELLELVRAIVEIGERLKGV-----------KEALRDGRLRFAAEELRELK 154 (732)
Q Consensus 109 ~el~~~~~~~~~l~~l~~~~~~L~~~-----------~~~l~~~~~~~Aa~~Le~~~ 154 (732)
|.++-..+.=..++.|++++..|+.| +-.+.+|.|..|+-++|++-
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 44444444445567788888887765 33478888899998888753
No 145
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=22.07 E-value=8.3e+02 Score=28.10 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 004748 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQDFAS 62 (732)
Q Consensus 28 ~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~ 62 (732)
.+|-...-..+-...|+.=-++.+.+...-..|+.
T Consensus 214 PedA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae 248 (434)
T PRK15178 214 AKQAEFFAQRILSFAEQHVNTVSARMQKERILWLE 248 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555544444443
No 146
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.02 E-value=2.6e+02 Score=22.65 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=5.1
Q ss_pred HHHHhHHHHHhhh
Q 004748 76 EISTDLSDILGLI 88 (732)
Q Consensus 76 ~~~~~~~~l~~~i 88 (732)
++..++..+.+.|
T Consensus 4 elEn~~~~~~~~i 16 (55)
T PF05377_consen 4 ELENELPRIESSI 16 (55)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444433333
No 147
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=21.94 E-value=5.8e+02 Score=22.81 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=27.9
Q ss_pred hhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 004748 55 SHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKEL 117 (732)
Q Consensus 55 ~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~ 117 (732)
.-|.++-......+++..+-..++++|..++..= .+......+...++.++...+.-
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~------~~~~~l~~e~~~lk~~i~~le~~ 89 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEIGKLKKAG------EDAEELKAEVKELKEEIKELEEQ 89 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT------CCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555555444431 23445555666666666555543
No 148
>PRK10807 paraquat-inducible protein B; Provisional
Probab=21.86 E-value=5.4e+02 Score=30.49 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=8.7
Q ss_pred HHHHHhHHHHHhhhcCCc
Q 004748 75 DEISTDLSDILGLISYRP 92 (732)
Q Consensus 75 ~~~~~~~~~l~~~i~~~~ 92 (732)
+++..++..++.+|+.-|
T Consensus 416 ~~l~~~~~~il~kin~lp 433 (547)
T PRK10807 416 AQIQQKLMEALDKINNLP 433 (547)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 344445555555554433
No 149
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.86 E-value=6.9e+02 Score=23.69 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=17.8
Q ss_pred hhhhhHHHHhHHHHHHhHHHHHhhhc
Q 004748 64 FSLCNDTVSRTDEISTDLSDILGLIS 89 (732)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~l~~~i~ 89 (732)
.+-|+++..+++.++..|...+..|.
T Consensus 42 ~~A~~~v~kql~~vs~~l~~tKkhLs 67 (126)
T PF07889_consen 42 SDAVASVSKQLEQVSESLSSTKKHLS 67 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777777777777777653
No 150
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.60 E-value=1.8e+03 Score=28.40 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=4.7
Q ss_pred HHHHhhhh
Q 004748 378 KARNLLLQ 385 (732)
Q Consensus 378 ~AR~ll~~ 385 (732)
.||.+|..
T Consensus 607 Ea~~~m~s 614 (1074)
T KOG0250|consen 607 EAREFMQS 614 (1074)
T ss_pred HHHHHHhc
Confidence 46666653
No 151
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=21.50 E-value=5.5e+02 Score=25.62 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004748 33 LLISRLEFHSLQIKSKVQS 51 (732)
Q Consensus 33 ~~i~~l~~~~~~~k~~v~~ 51 (732)
..|+.|+.|++++...|+.
T Consensus 5 ~~l~~Le~Ri~~LE~~v~G 23 (174)
T PF07426_consen 5 SALDILEKRIEELERRVYG 23 (174)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3567777777777777743
No 152
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.36 E-value=1.8e+03 Score=28.37 Aligned_cols=88 Identities=16% Similarity=0.254 Sum_probs=46.7
Q ss_pred HhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh--hcCcHHHHHH
Q 004748 72 SRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELL-ELVRAIVEIGERLKGVKEAL--RDGRLRFAAE 148 (732)
Q Consensus 72 ~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~-~~l~~l~~~~~~L~~~~~~l--~~~~~~~Aa~ 148 (732)
..++.+.+.|..+....-+ .+..++....+++..|++|++..+... ++-+....+.+.+...++.. -++.+..=.+
T Consensus 372 ~~~d~l~k~I~~~~~~~~~-~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k 450 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQTNN-ELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRK 450 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444444444444322 345566666777778888887666654 33344555666665555554 3344444444
Q ss_pred HHHHHHHHhhcC
Q 004748 149 ELRELKKDLRVG 160 (732)
Q Consensus 149 ~Le~~~~~l~~~ 160 (732)
..+.-...|+.+
T Consensus 451 ~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 451 KIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 153
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=21.31 E-value=1.2e+03 Score=30.09 Aligned_cols=19 Identities=0% Similarity=-0.022 Sum_probs=14.4
Q ss_pred CCCChhhHHHHHHHHHHHH
Q 004748 24 APLTAPDLRLLISRLEFHS 42 (732)
Q Consensus 24 ~~l~~~dl~~~i~~l~~~~ 42 (732)
++.++++++..++.+..+-
T Consensus 21 ~~p~~~~iq~~l~~~~~~~ 39 (1109)
T PRK10929 21 TAPDEKQITQELEQAKAAK 39 (1109)
T ss_pred cCCCHHHHHHHHHHhhcCC
Confidence 3567789999999887753
No 154
>COG4550 Predicted membrane protein [Function unknown]
Probab=21.13 E-value=6.8e+02 Score=23.35 Aligned_cols=63 Identities=10% Similarity=0.133 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCC
Q 004748 99 EIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (732)
Q Consensus 99 ~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~ 161 (732)
+-|+-|+....+|..|+.+...+..|+.+..--=-.+..-+..-+-.......+++..++..|
T Consensus 22 eeV~~fq~aE~qin~n~~v~~~~~~iK~lQKeAVn~q~y~K~eAlkqses~i~~le~ei~~~P 84 (120)
T COG4550 22 EEVKFFQQAEAQINANQKVKTKVDEIKKLQKEAVNLQHYDKEEALKQSESKIDELEAEIDHLP 84 (120)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhcCc
Confidence 556677777788888888877777766655433333333333333344444556666666665
No 155
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=21.06 E-value=1.5e+02 Score=29.00 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=19.6
Q ss_pred HHHHHhHHHHHHHHHhhhhhhhHHhhccccchhhhhhhc
Q 004748 453 FEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHND 491 (732)
Q Consensus 453 ~~L~~~~~~i~~LyravvP~~h~~~l~~~p~~a~l~yND 491 (732)
..+...++.++..|+|+.|.--.+--...|..+.++.||
T Consensus 105 ~~lk~~~k~~~~~ykaLs~~ak~dL~k~FP~i~~~~~~~ 143 (154)
T PF05823_consen 105 EELKQLAKKVIDSYKALSPEAKDDLKKNFPIIASFLQND 143 (154)
T ss_dssp HHHHHHH----HHHHTS-HHHHHHHHHH-TT--------
T ss_pred HHHHHHHhhhHHHHHcCCHHHHHHHHHHCccchhhhhhh
Confidence 468899999999999998876665556688877777776
No 156
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=21.04 E-value=4.8e+02 Score=21.71 Aligned_cols=40 Identities=8% Similarity=0.212 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 004748 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCN 68 (732)
Q Consensus 29 ~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~ 68 (732)
+.+++++-||.+|..+.|.++++-..---.+|..++.-|.
T Consensus 9 ~eiqkKvrkLqsrAg~akm~LhDLAEgLP~~wtei~~VA~ 48 (71)
T COG5420 9 EEIQKKVRKLQSRAGQAKMELHDLAEGLPVKWTEIMAVAE 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhccCCccHHHHHHHHH
Confidence 4678889999999999988888665554455555444333
No 157
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=21.01 E-value=2.5e+02 Score=22.80 Aligned_cols=17 Identities=6% Similarity=0.153 Sum_probs=6.6
Q ss_pred HHhHHHHHHhHHHHHhh
Q 004748 71 VSRTDEISTDLSDILGL 87 (732)
Q Consensus 71 ~~~~~~~~~~~~~l~~~ 87 (732)
.++|..|+.+++.|.+-
T Consensus 9 s~dVq~L~~kvdqLs~d 25 (56)
T PF04728_consen 9 SSDVQTLNSKVDQLSSD 25 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444433333
No 158
>TIGR03517 GldM_gliding gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.
Probab=20.71 E-value=6.5e+02 Score=29.70 Aligned_cols=62 Identities=10% Similarity=0.064 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcC
Q 004748 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISY 90 (732)
Q Consensus 29 ~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 90 (732)
+.|..-+...+.+.+.+=+.+.....+.=..|.+.+..|..+-..++++-+-++.|+..|-.
T Consensus 41 ~sl~~s~~~~~~~N~~~~~~l~~k~~~~p~k~~~~~~~A~~vk~~S~~l~~yl~~LK~~i~~ 102 (523)
T TIGR03517 41 ESLEAAVGNSEKYNNALLAELDKAVAKAPAKDKQWQESAQKVRTKSDSLYDYMNDLKEEIIR 102 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777776666666666789999999999999999999999999999744
No 159
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=20.64 E-value=6.1e+02 Score=22.57 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFAS 62 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~ 62 (732)
++-..++.+...+..|+..| +.|.+-+.....
T Consensus 5 ~F~~~v~~I~~~I~~i~~~v-~~l~~l~~~~l~ 36 (117)
T smart00503 5 EFFEKVEEIRANIQKISQNV-AELQKLHEELLT 36 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 55556666667777776665 466666655543
No 160
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=20.24 E-value=6.7e+02 Score=31.43 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhheeecCCCCCcHHHHHHHHHHh
Q 004748 125 VEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEELTVDGLDGIELRTVLEAMEVV 204 (732)
Q Consensus 125 ~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~~~~~~~~i~~~L~~~W~~lv~~~tv~~~~~~~L~~vl~AL~~l 204 (732)
+.+++-++.++++.++|+-.+|-+.|+++++.|++.....-.. .+..+-.=++.-++|+.|
T Consensus 568 ~dLq~Mmd~ieela~~G~~~~A~qlL~qlq~mmenlq~~q~~~-------------------g~~~~~~~~~~~q~m~~L 628 (851)
T TIGR02302 568 QDLQNMMDQIENLARSGDRDQAKQLLSQLQQMMNNLQMGQPGQ-------------------GQQMGDQSGDMEQQMNKL 628 (851)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCcCC-------------------CcccccchHHHHHHHHHH
Confidence 3488899999999999999999999999999999984211000 000000112336777777
Q ss_pred CcchHHHHHHHHHHHHHh
Q 004748 205 GILDYGLAKVADLKIKYV 222 (732)
Q Consensus 205 g~L~~~l~~l~~~L~~~i 222 (732)
|.+-.+=..|.+.-++.-
T Consensus 629 ~e~lr~QQ~L~D~tfr~~ 646 (851)
T TIGR02302 629 GELMRKQQQLRDETFKLD 646 (851)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 776666666666655553
No 161
>PRK10869 recombination and repair protein; Provisional
Probab=20.20 E-value=9.1e+02 Score=28.57 Aligned_cols=180 Identities=14% Similarity=0.106 Sum_probs=88.7
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-h---hhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccch
Q 004748 21 DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQ-D---FASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKE 96 (732)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~-~---f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 96 (732)
+| .|-+-+.|.....+|+. .++++..+.....--+. + -......+.....++..+...+..+...+++ ....
T Consensus 201 ~l-~~gE~eeL~~e~~~L~n-~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~--~~~~ 276 (553)
T PRK10869 201 AP-QPGEFEQIDEEYKRLAN-SGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEE--ALIQ 276 (553)
T ss_pred CC-CCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHH--HHHH
Confidence 55 47788888888888864 45555555544443333 1 1111222223333333333344444444433 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcC-cHHHHHHHHHHHHHHhhcCCCCCc-hhHHHHHH
Q 004748 97 VKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEAL-RDG-RLRFAAEELRELKKDLRVGDENAS-EPLVYGLL 173 (732)
Q Consensus 97 l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l-~~~-~~~~Aa~~Le~~~~~l~~~~~~~~-~~~i~~~L 173 (732)
+.++..++......+.+.. +.+.++..||...+..- +.| .+.+.+...++++..++....... ...+-..+
T Consensus 277 l~~~~~~l~~~~~~~~~dp------~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~ 350 (553)
T PRK10869 277 IQEASDELRHYLDRLDLDP------NRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAV 350 (553)
T ss_pred HHHHHHHHHHHHhhcCCCH------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 4444444443333333322 33566677777777663 444 677888888888888888754432 22222223
Q ss_pred HHHHH---HHhhheeecC-CCCCcHHH-HHHHHHHhCcchHH
Q 004748 174 RKEWL---VCFEELTVDG-LDGIELRT-VLEAMEVVGILDYG 210 (732)
Q Consensus 174 ~~~W~---~lv~~~tv~~-~~~~~L~~-vl~AL~~lg~L~~~ 210 (732)
...+. .+...++-.. .....|.. +-.-|.-||+-+.+
T Consensus 351 ~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~m~~a~ 392 (553)
T PRK10869 351 EKHHQQALETAQKLHQSRQRYAKELAQLITESMHELSMPHGK 392 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcE
Confidence 33333 3333332211 11122333 44556667765553
No 162
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.12 E-value=1.2e+03 Score=25.83 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRT 74 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~ 74 (732)
=|..+|-++...-+-+| .|++++.+|-.+-..+...-+.+..+.
T Consensus 72 llq~kirk~~e~~eglr-~i~es~~e~q~e~~qL~~qnqkL~nqL 115 (401)
T PF06785_consen 72 LLQTKIRKITEKDEGLR-KIRESVEERQQESEQLQSQNQKLKNQL 115 (401)
T ss_pred HHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 36777777766655554 689999988776655544444444333
No 163
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=20.09 E-value=1.4e+03 Score=26.75 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004748 110 EARVKKELLELVRAIVEIGERLKGVKEALR 139 (732)
Q Consensus 110 el~~~~~~~~~l~~l~~~~~~L~~~~~~l~ 139 (732)
+..|-.++-.+-++|..++..|.+-+.-++
T Consensus 482 r~NYE~QLs~MSEHLasmNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 482 RRNYEEQLSMMSEHLASMNEQLAKQREEIQ 511 (518)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335777888888999999999887766554
No 164
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=20.04 E-value=8.9e+02 Score=25.32 Aligned_cols=108 Identities=7% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhh----hhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHH---HHH
Q 004748 47 SKVQSYIASHHQD----FASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKE---LLE 119 (732)
Q Consensus 47 ~~v~~~i~~~y~~----f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~---~~~ 119 (732)
+++.+-+..+|.+ |..-.+-..++..+...+.+.++.+..+ ..++-.++.++..--..|...+. +-.
T Consensus 7 ~~~~~~~~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~------rkela~~~~efa~s~~~L~~~E~~~~ls~ 80 (234)
T cd07664 7 ADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCH------RKELSANTAAFAKSAAMLGNSEDHTALSR 80 (234)
T ss_pred HHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHcCcccchHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcC
Q 004748 120 LVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVG 160 (732)
Q Consensus 120 ~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~ 160 (732)
.+.++.++..+|.+..+......+..=...|++--..+..+
T Consensus 81 ~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~sv 121 (234)
T cd07664 81 ALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAV 121 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
No 165
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.02 E-value=5.6e+02 Score=28.03 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhh
Q 004748 31 LRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGL 87 (732)
Q Consensus 31 l~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (732)
...++++|..+.++.+.|.- .|..|+...+...+.......+.+++..+..-
T Consensus 7 ~~~l~~~l~~~~~~~~~E~~-----~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~E 58 (314)
T PF04111_consen 7 TDLLLEQLDKQLEQAEKERD-----TYQEFLKKLEEESDSEEDIEELEEELEKLEQE 58 (314)
T ss_dssp ----------------------------------------HH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 45677888888888887754 67888877775444455555555555554444
Done!