Query 004748
Match_columns 732
No_of_seqs 164 out of 216
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 04:32:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k8p_C DSL1, KLLA0C02695P; int 100.0 1.9E-30 6.6E-35 271.0 19.2 251 424-729 96-350 (357)
2 2fji_1 Exocyst complex compone 96.9 0.5 1.7E-05 51.5 27.9 268 423-712 52-350 (399)
3 3hr0_A COG4; conserved oligome 96.2 0.2 6.8E-06 51.8 18.2 188 518-728 69-262 (263)
4 3swh_A MUNC13-1, protein UNC-1 87.1 34 0.0012 36.3 23.2 285 358-683 9-327 (341)
5 2d2s_A Exocyst complex compone 70.1 89 0.0031 31.2 14.8 193 122-345 13-217 (235)
6 2v66_B Nuclear distribution pr 69.6 38 0.0013 30.0 10.4 34 30-63 7-40 (111)
7 3csx_A Putative uncharacterize 64.0 29 0.00099 29.0 7.8 64 21-84 10-76 (81)
8 3ghg_A Fibrinogen alpha chain; 61.4 41 0.0014 37.4 10.8 18 165-182 173-190 (562)
9 3ol1_A Vimentin; structural ge 61.0 56 0.0019 29.1 10.1 78 30-119 24-107 (119)
10 2l5g_B Putative uncharacterize 57.0 14 0.00047 27.0 4.0 27 25-51 1-27 (42)
11 2v71_A Nuclear distribution pr 46.3 89 0.003 30.3 9.3 18 33-50 56-73 (189)
12 2js5_A Uncharacterized protein 40.5 1.5E+02 0.005 24.2 8.2 58 27-84 4-64 (71)
13 2kvp_A Talin-1; VBS, vinculin, 40.2 2.4E+02 0.0083 26.6 14.8 113 30-142 41-164 (165)
14 1deq_A Fibrinogen (alpha chain 39.7 2.3E+02 0.008 30.2 11.9 23 31-53 54-80 (390)
15 3etv_A Protein transport prote 38.5 3.8E+02 0.013 28.3 14.4 42 119-160 69-110 (355)
16 3swk_A Vimentin; cytoskeleton, 37.7 1.8E+02 0.0062 24.3 8.9 75 29-115 3-83 (86)
17 1xaw_A Occludin; coiled-coil, 36.7 2.5E+02 0.0087 25.8 10.6 81 50-136 51-137 (140)
18 3g67_A Methyl-accepting chemot 35.1 3.3E+02 0.011 26.6 14.2 13 38-50 5-17 (213)
19 1go4_E MAD1 (mitotic arrest de 33.6 1.1E+02 0.0037 26.6 6.9 30 21-50 4-36 (100)
20 3ghg_A Fibrinogen alpha chain; 32.7 2.5E+02 0.0085 31.3 11.1 10 41-50 65-74 (562)
21 4i0x_B ESAT-6-like protein MAB 31.7 2E+02 0.0068 24.3 8.5 76 57-136 10-88 (103)
22 2b0h_A Talin-1; vinculin, heli 31.7 3E+02 0.01 25.1 13.1 112 30-141 13-135 (137)
23 3swf_A CGMP-gated cation chann 28.0 1.9E+02 0.0065 23.7 7.0 50 28-77 2-51 (74)
24 1jcd_A Major outer membrane li 27.1 2.1E+02 0.0071 21.8 7.3 11 122-132 39-49 (52)
25 1hlb_A Hemoglobin (deoxy); oxy 26.6 2.1E+02 0.0071 26.0 8.3 91 16-110 3-107 (158)
26 2pih_A Protein YMCA; regulate 26.5 1.8E+02 0.0061 26.9 7.7 74 77-160 9-85 (151)
27 4abx_A DNA repair protein RECN 25.0 4.2E+02 0.014 24.7 11.1 127 23-158 29-160 (175)
28 2d4y_A HAP1, flagellar HOOK-as 24.4 2.3E+02 0.0079 30.9 9.5 16 49-64 42-57 (463)
29 1jcd_A Major outer membrane li 24.2 1.2E+02 0.004 23.2 4.8 17 70-86 9-25 (52)
30 1p9i_A Cortexillin I/GCN4 hybr 22.2 1.4E+02 0.0049 19.5 4.1 26 30-55 3-28 (31)
31 1hlm_A Hemoglobin (cyano Met); 21.6 2.8E+02 0.0097 25.0 8.2 73 16-88 3-89 (159)
32 3l39_A Putative PHOU-like phos 21.5 3.6E+02 0.012 26.2 9.4 55 28-82 58-118 (227)
33 3fav_B ESAT-6, 6 kDa early sec 21.3 1.8E+02 0.0061 23.8 6.1 76 58-136 5-80 (94)
34 3t98_B Nucleoporin NUP58/NUP45 21.1 3E+02 0.01 23.4 7.4 21 30-50 16-36 (93)
35 2olt_A Hypothetical protein; s 20.2 5.8E+02 0.02 24.4 12.7 29 29-57 49-77 (227)
No 1
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis}
Probab=99.97 E-value=1.9e-30 Score=270.98 Aligned_cols=251 Identities=18% Similarity=0.231 Sum_probs=177.9
Q ss_pred eeecccHHHHHHHHHHHHHHhhh-hchHhHHHHHHhHHHHHH-HHHhhhhhhhHHhhccccchhhhhhhchHHHHHHHhh
Q 004748 424 CVVTKAASQLMKLVHQILQDICL-SSTRVAFEFYHAARDAIL-LYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILG 501 (732)
Q Consensus 424 c~IS~~~~~l~~Li~~~L~ea~~-ss~~~a~~L~~~~~~i~~-LyravvP~~h~~~l~~~p~~a~l~yNDc~YLa~~L~~ 501 (732)
..||+.|+.+..++......+.. ....+. +-|..-.+++. .|-|+.-.+| .+- -.||||--|+-.+=.
T Consensus 96 i~vt~lp~~f~~i~~~f~~~~~~~~~~~~~-~~~~yK~NlLqT~f~am~~~~~-~~W-------wqly~D~ryi~~~~~- 165 (357)
T 3k8p_C 96 IQVSVFVQSAAKVFTEFEQGCDTIGRSKVE-SIYLYKFNLLQTAFFAMVSEKV-NDW-------TQLYKDVRYLYTENP- 165 (357)
T ss_dssp EEEETHHHHHHHHHHHHHHHHHTTTTTSSH-HHHHHHHHHHHHHHHHHHHHHC-SCH-------HHHHHHHHHHHHHCT-
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHHHHhh-hHH-------HHHHHHHHHHHhcCh-
Confidence 88999999999999998887643 333344 66666666655 4778777776 332 789999999977611
Q ss_pred chhhhccCCCcchhhh-hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhhhHHHHHHHHHHHHH
Q 004748 502 FAFEYHSDFPSSIKEH-AVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILE 580 (732)
Q Consensus 502 l~~~~~~~l~~~~~~~-~~Fvd~~~~~r~~a~~~~~~qi~~~~~~L~~~L~~a~gf~~~~~~~~~e~~~~ai~q~~~~L~ 580 (732)
.| ..++++ ..|++.--.. -+....+-++.|.++++ +...+= ..... +++. |-
T Consensus 166 -------~l-~rl~EL~~~~le~~l~~---~~k~v~~lv~~qL~~l~---~nE~~p-------~W~~t---~~~L---lP 218 (357)
T 3k8p_C 166 -------KL-LQLMELNSRRLDLNLNL---IKKTIYKLVNDQLQELK---DNERTP-------DWDIT---ISSL---LP 218 (357)
T ss_dssp -------TC-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HTSSSC-------CCHHH---HHTH---HH
T ss_pred -------hh-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---hccCCC-------CHHHH---HHHH---HH
Confidence 11 012222 2233322111 11122222333333333 232221 12111 2332 33
Q ss_pred HHHhhcccCCChHHHHHHHHHHHHHHH-HHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhHhhhhhhHHhhcCCCCCCCC
Q 004748 581 KVHIIWEPLLLPSTYNRSMCTVLESVF-SRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDF 659 (732)
Q Consensus 581 ~l~~~W~~vLp~~vy~~~ig~Lv~~v~-~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~LF~~~~~~~~~~~~~~~~ 659 (732)
-+.+.|.+.|.+....+.++.|+++++ ++||++|++++|||+++|++|+.||+.+ .++..+ |..
T Consensus 219 ~i~~~i~~pl~k~~~~~~l~~lvnfi~~~~II~dIl~LeDISE~eS~~La~Li~~l-~~l~~l--P~l------------ 283 (357)
T 3k8p_C 219 YLKKTALPTLYKLEDNTILVALIRYIVHDLVIDNILHWRVISEKSSENLSEFIMLL-LSGLEI--PRL------------ 283 (357)
T ss_dssp HHHHTHHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHTSSCCCHHHHHHHHHHHHHH-HHHTCC--GGG------------
T ss_pred HHHHHhhhHhhcchHHHHHHHHHHHHHhhHHHHHHcCcccCCHHHHHHHHHHHHHH-HcCCCC--ccc------------
Confidence 445667777777888999999999999 9999999999999999999999999985 333344 211
Q ss_pred ccchhhhchhHHhHHHHHHHccCChHhHHHHhhcCCcccCCCCHHHHHHHHHHhcCCChHHHHHHHHHHc
Q 004748 660 ARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIEN 729 (732)
Q Consensus 660 ~~~~~~~vp~W~Kf~~L~~iL~asL~dI~~~W~~G~lla~~fs~~Ev~~LIrAlF~ds~~R~~~L~~I~~ 729 (732)
..++.|||+|.||+||++||++||+||+++|++|++ + +|+++||++||||||+|||+|+++|++|++
T Consensus 284 -~~i~~Yv~~W~Kf~~L~~IL~ssLkDI~~lW~eGeL-~-~FstdEVv~LIrALFaDT~~Rr~aI~eIre 350 (357)
T 3k8p_C 284 -NLIETYRHSREKLGILSKILTAHLKDILEMFYEGEF-F-LFETDEIVQWIILLFADTPTRRDCIDEIRR 350 (357)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTGG-G-GSCHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCc-c-eecHHHHHHHHHHHCcCCHHHHHHHHHHHH
Confidence 135789999999999999999999999999999998 4 999999999999999999999999999987
No 2
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.5 Score=51.54 Aligned_cols=268 Identities=10% Similarity=0.124 Sum_probs=162.6
Q ss_pred ceeecccHHHHHHHHHHHHHHhhhhchH-hHHH----HHHhHHHHHHHHHhhhhhhhHHhh-------c---------cc
Q 004748 423 RCVVTKAASQLMKLVHQILQDICLSSTR-VAFE----FYHAARDAILLYEAIVPVKLERQL-------E---------GI 481 (732)
Q Consensus 423 ~c~IS~~~~~l~~Li~~~L~ea~~ss~~-~a~~----L~~~~~~i~~LyravvP~~h~~~l-------~---------~~ 481 (732)
-+.+|..|..+..++.+.+.-|..++.. +..+ .+..-......|+..+-.+..+.+ . +.
T Consensus 52 g~~~t~~~~dvfqml~eql~~a~~~~~~~l~~~v~~~~~~~L~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (399)
T 2fji_1 52 GLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDEC 131 (399)
T ss_dssp SCEECHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSCCTTTCC
T ss_pred CCeeCCchHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCccccc
Confidence 4668999999999999999888654432 3222 222222333334333333222111 0 01
Q ss_pred -c---chhhhhhhchHHHHHHHhhchhhhccCCCcchhh--hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 004748 482 -N---QVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKE--HAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADG 555 (732)
Q Consensus 482 -p---~~a~l~yNDc~YLa~~L~~l~~~~~~~l~~~~~~--~~~Fvd~~~~~r~~a~~~~~~qi~~~~~~L~~~L~~a~g 555 (732)
| ....-+-|||+..+..+..+...|.....+...+ ...|-++...|..++..+++.-++.....|+..++..
T Consensus 132 ~~~~~e~liA~~Nn~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~~l-- 209 (399)
T 2fji_1 132 PGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEI-- 209 (399)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHTTT--
T ss_pred cccHHHhhhhhhccHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 1 1234567999999998888888876544433221 2356667778888888887766666555566665432
Q ss_pred CccchhhhhhhhHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHhhhcccCCC---HHHHHHHHHHH
Q 004748 556 FQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMA---AEETLQLQRLI 632 (732)
Q Consensus 556 f~~~~~~~~~e~~~~ai~q~~~~L~~l~~~W~~vLp~~vy~~~ig~Lv~~v~~~ii~~Il~l~DIs---~~es~~L~~l~ 632 (732)
|.. .-|+.- ++++.+..++.....-++.|.++.|...+..+.+.++.+.+..++.-.-+. ..-+.+|..=
T Consensus 210 ft~----~W~~~~--~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~~~~~~~~~~l~~D- 282 (399)
T 2fji_1 210 FSK----TWYMGS--QAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRD- 282 (399)
T ss_dssp TSG----GGTTCC--HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGGCCCCCCGGGHHHHHHHHH-
T ss_pred CCc----hhcCCc--HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH-
Confidence 211 112111 588888888888887889999999999999999999999999999722355 4445554332
Q ss_pred HHHHHhhHhhhhhhHHhhcCCCCCCCCccchhhhchhHHhHHHHHHHccC-ChHhHHHHhhcCCcccCCCCHHHHHHHHH
Q 004748 633 HLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDM-PLRSITAAWESGELLSCGFTLSEIEDFIK 711 (732)
Q Consensus 633 ~~~~~~l~~LF~~~~~~~~~~~~~~~~~~~~~~~vp~W~Kf~~L~~iL~a-sL~dI~~~W~~G~lla~~fs~~Ev~~LIr 711 (732)
.+.+..+|..... + .. ..+.-....|..+..|.+ |.. +...|..-|..=...-=+++.++|..++.
T Consensus 283 ---~~~l~~~f~~~~~----~----~~-~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~ 349 (399)
T 2fji_1 283 ---FEIFYQLFVKVLD----G----NE-SKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLEVYWDSRIDLLVGILK 349 (399)
T ss_dssp ---HHHHHHHHHHHTT----T----CT-THHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHTTCTTCCSHHHHHHHT
T ss_pred ---HHHHHHHHHHhcc----c----cc-hhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3445666665421 0 00 000012456788888888 865 44778777743321011567777776664
Q ss_pred H
Q 004748 712 A 712 (732)
Q Consensus 712 A 712 (732)
.
T Consensus 350 ~ 350 (399)
T 2fji_1 350 C 350 (399)
T ss_dssp T
T ss_pred h
Confidence 3
No 3
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=96.22 E-value=0.2 Score=51.76 Aligned_cols=188 Identities=14% Similarity=0.226 Sum_probs=121.7
Q ss_pred hHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCCccchhhhhhhhHHH---HHHHHHHHHHHHHhhcccCCChH
Q 004748 518 AVFADMAPRFHLMAEEILQRQI-QIVIFNLREALDGADGFQNTHQIQQFESAKF---SIEQVVFILEKVHIIWEPLLLPS 593 (732)
Q Consensus 518 ~~Fvd~~~~~r~~a~~~~~~qi-~~~~~~L~~~L~~a~gf~~~~~~~~~e~~~~---ai~q~~~~L~~l~~~W~~vLp~~ 593 (732)
..|.+....|+++-...++.-. +..+-.|+.+|+....-...-.+++|+..+. .+.+.+..+..+=..|+++|.++
T Consensus 69 ~~l~~~~~k~~~ll~~gi~~Lf~~~ikprLr~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~ 148 (263)
T 3hr0_A 69 SDLAAVSNKFRDLLQEGLTELNSTAIKPQVQPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPV 148 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCHhHHhhhhcccHHHHHHHHHHHHHHHHHHHHcChH
Confidence 3455555566666655544332 2333446666643222211111233433321 26788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhHhhhhhhHHhhcCCCCCCCCccchhhhchhHHhH
Q 004748 594 TYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKF 673 (732)
Q Consensus 594 vy~~~ig~Lv~~v~~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~LF~~~~~~~~~~~~~~~~~~~~~~~vp~W~Kf 673 (732)
.|.+.++.+++.++..+=..|+. .-+++==|.+|-+=++.+++-+.+. +.. ..-....|+
T Consensus 149 ~y~~Ll~~~~~~la~~lE~~i~~-~~fn~lGal~LdrDvr~li~~~~~~----------~~~---------~lRekF~RL 208 (263)
T 3hr0_A 149 IYDSLTGLMTSLVAVELEKVVLK-STFNRLGGLQFDKELRSLIAYLTTV----------TTW---------TIRDKFARL 208 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHHHHHHHHHTT----------SCT---------THHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCcCchhHHHHHHHHHHHHHHHHhc----------cch---------hhhHHHHHH
Confidence 99999999999988877777776 4577777888776666543333111 110 123677899
Q ss_pred HHHHHHccC-ChHhHHHHhhcCC-cccCCCCHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004748 674 RKLAELLDM-PLRSITAAWESGE-LLSCGFTLSEIEDFIKAIFADSTLRKECLWRIE 728 (732)
Q Consensus 674 ~~L~~iL~a-sL~dI~~~W~~G~-lla~~fs~~Ev~~LIrAlF~ds~~R~~~L~~I~ 728 (732)
.++..+|+. +..|+.+.|.++. ...-.+|++|++.. +---.|.|.+.|++++
T Consensus 209 ~QI~~lLnle~~eev~d~~~~~~~~~~W~Ls~~E~r~i---l~lRvDf~~e~I~~l~ 262 (263)
T 3hr0_A 209 SQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQV---LALRIDFRSEDIKRLR 262 (263)
T ss_dssp HHHHHHHTCSSGGGGGGTSGGGGTTCCCCSCHHHHHHH---HTTBTTSCHHHHHHCC
T ss_pred HHHHHHHcCCChHHHHHHhcccCCCccccCCHHHHHHH---HHhhccCCHHHHHhcc
Confidence 999999998 8899998897632 23447999999854 4455677777777653
No 4
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=87.13 E-value=34 Score=36.34 Aligned_cols=285 Identities=11% Similarity=0.148 Sum_probs=149.6
Q ss_pred HHHHhHHHHHHHhhhHHHHHHHHHhhhhcCCCCCCCCCCCCCCcccCCCCCCCCcccccccccccceeecccHHHHHHHH
Q 004748 358 NFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLV 437 (732)
Q Consensus 358 ~~v~~v~~~f~~krr~~~L~~AR~ll~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~c~IS~~~~~l~~Li 437 (732)
.|-...=.+|+..-..+.+..++..+..|.|+..... + +.-.=|+|+-.+...+
T Consensus 9 ~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~----------------~----------~~~~hSsSvvDif~~~ 62 (341)
T 3swh_A 9 AWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQT----------------S----------EHALFSCSVVDVFSQL 62 (341)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS----------------S----------SSCCSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccc----------------c----------cCccccchHHHHHHHH
Confidence 3444455577777788888888887876555332110 0 1114577888888888
Q ss_pred HHHHHHhhh--hchH-----hHHHHHHhHHHHHHHHHhhhhhhhHHhhccc-cchhhhhhhchHHHHHHHhhchhhhc-c
Q 004748 438 HQILQDICL--SSTR-----VAFEFYHAARDAILLYEAIVPVKLERQLEGI-NQVAVLMHNDCLYLSQEILGFAFEYH-S 508 (732)
Q Consensus 438 ~~~L~ea~~--ss~~-----~a~~L~~~~~~i~~LyravvP~~h~~~l~~~-p~~a~l~yNDc~YLa~~L~~l~~~~~-~ 508 (732)
+++.+--.. -+++ .-.+|...+-.++..|..++-.........- ....++.-||..|+-..|..+..+.. .
T Consensus 63 ~Q~~~~~~~L~WpD~~~~~~f~t~l~~~i~~~~~~Y~~~l~~~~~~~~~~e~~~~~Cv~lNNie~lR~~L~~l~~~l~~~ 142 (341)
T 3swh_A 63 NQSFEIIKKLECPDPQIVGHYMRRFAKTISNVLLQYADIVSKDFASYCSKEKEKVPCILMNNTQQLRVQLEKMFEAMGGK 142 (341)
T ss_dssp HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhcccHHHHHHHHHHHHHhcchh
Confidence 887764421 1111 1123455566666666666544443322111 12358888999999999988776543 1
Q ss_pred CCCcchhhhhHHhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCCC---CccchhhhhhhhHHHHHHHHHHH
Q 004748 509 DFPSSIKEHAVFADMAPRFHLMA-------EEILQRQIQIVIFNLREALDGADG---FQNTHQIQQFESAKFSIEQVVFI 578 (732)
Q Consensus 509 ~l~~~~~~~~~Fvd~~~~~r~~a-------~~~~~~qi~~~~~~L~~~L~~a~g---f~~~~~~~~~e~~~~ai~q~~~~ 578 (732)
.+.+.... ..-++-..++..- ...|+..|+.+...+...|....| ++..........++.+++-.++.
T Consensus 143 ~l~~~~~~--~~~~lq~~l~~vl~~l~~~~~~~~~~~i~~~v~~m~~~l~~i~~~~~~~~~~~~~~~~~~~~ai~PLm~y 220 (341)
T 3swh_A 143 ELDAEASG--TLKELQVKLNNVLDELSHVFATSFQPHIEECVRQMGDILSQVKGTGNVPASACSSVAQDADNVLQPIMDL 220 (341)
T ss_dssp TSCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC-----------CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccccccccccHHHHHHHHHHH
Confidence 23322221 1111111111111 123455555555555554433222 22110111123345667888888
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHhhh---------------cccCCCHHHHHHHHHHHHHHHHhhHhhh
Q 004748 579 LEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDIL---------------LLDDMAAEETLQLQRLIHLMLENLSSLL 643 (732)
Q Consensus 579 L~~l~~~W~~vLp~~vy~~~ig~Lv~~v~~~ii~~Il---------------~l~DIs~~es~~L~~l~~~~~~~l~~LF 643 (732)
|..==......|-..++.+.+..|-..++..+..-|+ .-.+.+..++..|..- ++.+.+.|
T Consensus 221 Ld~~L~~l~~~L~~~~f~rvL~~lW~~~l~~l~~~i~lP~~~~~~~~~~~~~~~r~~~~~~~~~l~~~----L~~L~~fF 296 (341)
T 3swh_A 221 LDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFSKLKDHMVREEAKSLTPKQCAVVELA----LDTIKQYF 296 (341)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSSCC----------CTTHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhhHhhhcccccCCCCHHHHHHHHHH----HHHHHHHh
Confidence 7766667778899999999999999999887766541 0123444555555444 45567788
Q ss_pred hhhHHhhcCCCCCCCCccchhhhchhHHhHHHHHHHccCC
Q 004748 644 ESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMP 683 (732)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~vp~W~Kf~~L~~iL~as 683 (732)
... ++| .+. .....-|.|.++++...+-..+
T Consensus 297 hA~----G~G-L~~----~~Leks~~~~~l~~~L~L~~~~ 327 (341)
T 3swh_A 297 HAG----GVG-LKK----TFLEKSPDLQSLRYALSLYTQA 327 (341)
T ss_dssp HGG----GTS-CCH----HHHHTCHHHHHHHHHHHHC---
T ss_pred ccC----CCC-CCH----HHHccChhHHHHHHHHHHhcCC
Confidence 642 333 111 1111234566676666554443
No 5
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=70.07 E-value=89 Score=31.18 Aligned_cols=193 Identities=13% Similarity=0.076 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCCCCC--chhHHHH----HHHHHHHHHhhhe--eec-CCCCC
Q 004748 122 RAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENA--SEPLVYG----LLRKEWLVCFEEL--TVD-GLDGI 192 (732)
Q Consensus 122 ~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~~~~--~~~~i~~----~L~~~W~~lv~~~--tv~-~~~~~ 192 (732)
+.++.+...+++.+-.+.+.+|.+|+..+++.+..+....... ....... .+.+.=..+...+ .++ ...+.
T Consensus 13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~~~~~~ 92 (235)
T 2d2s_A 13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEIV 92 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 5678888899999999999999999999999999999876321 1112222 2333323333322 111 22245
Q ss_pred cHHHHHHHHHHhCcchHHHHHHHHHHHHHhhhhhhcCCCCcccccccCCCCcccccceeeeeccCCccccCCChhhHHHH
Q 004748 193 ELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSG 272 (732)
Q Consensus 193 ~L~~vl~AL~~lg~L~~~l~~l~~~L~~~ii~P~i~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~~~k~~~~~~~~v~~~ 272 (732)
.+...+.+|..||.-+....-|-+.--. .|+-.+..- .+ + +....+..+ =..-+|+.
T Consensus 93 ~~r~~v~~L~rLg~~~~A~~lfL~~rs~-~i~~~~r~l---~~-~----------gd~~~Yi~~--------Ls~i~Fs~ 149 (235)
T 2d2s_A 93 HLKSGTENMIKLGLPEQALDLFLQNRSN-FIQDLILQI---GS-V----------DNPTNYLTQ--------LAVIRFQT 149 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHHHCC------C----------CSHHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHH-HHHHHHHHh---cc-c----------CCHHHHHHH--------HHHHHHHH
Confidence 6788889999999877765544333222 222222111 00 0 010111000 01134555
Q ss_pred HHHHHHHHHHhcccCCCchHHHh---hhhhhHHHHHHHHHhhcccCCCCChhhhhhHHHHHHHHHHHHHHHHHccc
Q 004748 273 IIQVVKFIHKRICLQNGSWVRCF---GRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMF 345 (732)
Q Consensus 273 l~~v~~FL~~~L~~~~~~l~~~l---g~~i~p~ls~~lI~~~L~~aIP~~~~~l~~F~~vi~~~~~Fe~~L~~lgf 345 (732)
|....+-..+.++..++..++.| ++.=...+...+..+.+. ...+- .+-++.+...+..|++.|.
T Consensus 150 I~~t~~~f~~~F~~~~~~~~S~lV~Wa~~eve~f~~l~~rqv~~------~~~l~--~ecv~i~~~~~~~L~~vGL 217 (235)
T 2d2s_A 150 IKKTVEDFQDIFKELGAKISSILVDWCSDEVDNHFKLIDKQLLN------DEMLS--PGSIKSSRKQIDGLKAVGL 217 (235)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------CC--HHHHHHHHHHHHGGGGGTC
T ss_pred HHHHHHHHHHHhCCCCcccccHHHHHHHHHHHHHHHHHHHHccC------CccHH--HHHHHHHHHHHHHHHHcCC
Confidence 55555544443332122333222 222224445555555544 22333 3788888999999999987
No 6
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=69.65 E-value=38 Score=30.03 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASL 63 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~ 63 (732)
||..+..+|...+++.|......-..+|+.-..+
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~L 40 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVL 40 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888877766555555443333
No 7
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=63.98 E-value=29 Score=29.01 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=39.1
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hhhhhHHHHhHHHHHHhHHHH
Q 004748 21 DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASL---FSLCNDTVSRTDEISTDLSDI 84 (732)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~---~~~~~~~~~~~~~~~~~~~~l 84 (732)
+.++|=+-+.|.+.|.||.++.-+.|+++++-...=-.+|-.+ .+.+-+.....++.+..+..+
T Consensus 10 ~~~t~~di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 76 (81)
T 3csx_A 10 NNPTPEAVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIW 76 (81)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555678999999999999999999998887644455544 444444444454444444443
No 8
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=61.42 E-value=41 Score=37.38 Aligned_cols=18 Identities=11% Similarity=-0.031 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHHHHhh
Q 004748 165 SEPLVYGLLRKEWLVCFE 182 (732)
Q Consensus 165 ~~~~i~~~L~~~W~~lv~ 182 (732)
....=|+.+.....+++.
T Consensus 173 vd~~sY~~~QKQLeQv~a 190 (562)
T 3ghg_A 173 VDLKDYEDQQKQLEQVIA 190 (562)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHhh
Confidence 345556556666555554
No 9
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=60.99 E-value=56 Score=29.14 Aligned_cols=78 Identities=13% Similarity=0.137 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH------HHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSY------IASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDE 103 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~------i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~ 103 (732)
+|+..|+.+......+..++-.+ .+.+|.+-... ..++-+....+++++|+..-. -.+.-.+
T Consensus 24 ~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~---r~~~E~di~~lrK~lD~~~l~---------r~dLE~~ 91 (119)
T 3ol1_A 24 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ---REEAENTLQSFRQDVDNASLA---------RLDLERK 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHhhhcccHHHHH---------HHHHHHH
Confidence 78888877777666665544332 45556554443 344455666677777665433 1234456
Q ss_pred HHHHHHHHHHHHHHHH
Q 004748 104 VSAKMKEARVKKELLE 119 (732)
Q Consensus 104 ~~~l~~el~~~~~~~~ 119 (732)
+..|+.||.|.+.+.+
T Consensus 92 iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 92 VESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788888888777653
No 10
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=56.96 E-value=14 Score=26.96 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=24.5
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHH
Q 004748 25 PLTAPDLRLLISRLEFHSLQIKSKVQS 51 (732)
Q Consensus 25 ~l~~~dl~~~i~~l~~~~~~~k~~v~~ 51 (732)
+||++||-.+|+|+.+++.-++..|.+
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~ 27 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISK 27 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999998874
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=46.26 E-value=89 Score=30.27 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004748 33 LLISRLEFHSLQIKSKVQ 50 (732)
Q Consensus 33 ~~i~~l~~~~~~~k~~v~ 50 (732)
..+..|..++.+++.++-
T Consensus 56 k~~~~L~~~~~~L~~E~e 73 (189)
T 2v71_A 56 QRNRDLQADNQRLKYEVE 73 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 12
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=40.46 E-value=1.5e+02 Score=24.17 Aligned_cols=58 Identities=10% Similarity=0.209 Sum_probs=38.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hhhhhHHHHhHHHHHHhHHHH
Q 004748 27 TAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASL---FSLCNDTVSRTDEISTDLSDI 84 (732)
Q Consensus 27 ~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~---~~~~~~~~~~~~~~~~~~~~l 84 (732)
+-+.|.+.|.||.++.-+.|+++++-...=-.+|-.+ .+.+-+.-...++.+..+..+
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 64 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASL 64 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999998877543444444 444444444444444444433
No 13
>2kvp_A Talin-1; VBS, vinculin, helical bundle, cytoplasm, cytoskeleto membrane, phosphoprotein, structural protein, acetylation, membrane; NMR {Mus musculus}
Probab=40.17 E-value=2.4e+02 Score=26.57 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHH-HH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSA-KM 108 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~-l~ 108 (732)
....+=.+|-....+|-.-+.+|+.+...+=..+-..|.++...-..|..+-.......++.++...|+..+.++=. -.
T Consensus 41 sf~dYQt~m~~~~K~iA~~aq~mv~k~~~~p~eL~~la~~it~~y~~La~~~~~A~~t~~~~~i~~~Ik~~Vq~LG~sc~ 120 (165)
T 2kvp_A 41 SFVDYQTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCS 120 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhHHHH
Confidence 66667777777888888889999999999988999999999999999999998888888887777788888877621 11
Q ss_pred HHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 004748 109 KEAR------V----KKELLELVRAIVEIGERLKGVKEALRDGR 142 (732)
Q Consensus 109 ~el~------~----~~~~~~~l~~l~~~~~~L~~~~~~l~~~~ 142 (732)
.-++ . ...-.++.+.-+.+.+.+..+-++|..|.
T Consensus 121 ~lV~~ag~~q~~p~d~~~q~eL~~~aR~VsekVs~vLaALqaGs 164 (165)
T 2kvp_A 121 ALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVLAALQAGN 164 (165)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 1111 1 11123455666666677777777776653
No 14
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.68 E-value=2.3e+02 Score=30.22 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=11.0
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHH
Q 004748 31 LRLLISRL----EFHSLQIKSKVQSYI 53 (732)
Q Consensus 31 l~~~i~~l----~~~~~~~k~~v~~~i 53 (732)
|+..|++. ..|+++||.+|.++.
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s 80 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQ 80 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 44455443 345555555555433
No 15
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=38.52 E-value=3.8e+02 Score=28.30 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcC
Q 004748 119 ELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVG 160 (732)
Q Consensus 119 ~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~ 160 (732)
.-+..++.+...|.+++.-++--++.-+--.|..+++.++..
T Consensus 69 ~~l~~LK~Vs~Li~EfktN~ellElENCyYSLqnLrKKl~~n 110 (355)
T 3etv_A 69 NILDNLKTFLNLIKEVKTNLNILELENCYYSLQSLRKKMRNN 110 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466778889999999999999999999999999999999765
No 16
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=37.67 E-value=1.8e+02 Score=24.32 Aligned_cols=75 Identities=11% Similarity=0.116 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH------HHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHH
Q 004748 29 PDLRLLISRLEFHSLQIKSKVQSY------IASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIID 102 (732)
Q Consensus 29 ~dl~~~i~~l~~~~~~~k~~v~~~------i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~ 102 (732)
.+|+..|+.+......+..++-++ .+.+|.+-.. ...+......++++++|.+.-. + .+.-.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~---~R~~~E~d~~~LrkdvD~a~l~------r---~dLE~ 70 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML---QREEAENTLQSFRQDVDNASLA------R---LDLER 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTTHHHHHHH------H---HHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHH------H---HHHHH
Confidence 478888887777777766665543 3445554444 4444455566667777665433 1 23334
Q ss_pred HHHHHHHHHHHHH
Q 004748 103 EVSAKMKEARVKK 115 (732)
Q Consensus 103 ~~~~l~~el~~~~ 115 (732)
++..|+.||.|.+
T Consensus 71 kvesL~eEl~fLk 83 (86)
T 3swk_A 71 KVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 5667777777654
No 17
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=36.70 E-value=2.5e+02 Score=25.76 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=42.8
Q ss_pred HHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 004748 50 QSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKE------ARVKKELLELVRA 123 (732)
Q Consensus 50 ~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~e------l~~~~~~~~~l~~ 123 (732)
..--+..|.+|-.+-....++..+..+|...|+.+- +...+.++++.|+.++++- .+..+--.-+-..
T Consensus 51 K~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l~------~~s~e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~K 124 (140)
T 1xaw_A 51 KRNFDTGLQEYKSLQSVLDEINKELSRLDKELDDYR------EESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSK 124 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------TTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 334455566666655555555555555555555532 2344666778888876542 1222221223345
Q ss_pred HHHHHHHHHHHHH
Q 004748 124 IVEIGERLKGVKE 136 (732)
Q Consensus 124 l~~~~~~L~~~~~ 136 (732)
|..|.+.+.+++.
T Consensus 125 LsHIK~lI~~YD~ 137 (140)
T 1xaw_A 125 LSHIKKMVGDYDR 137 (140)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc
Confidence 5566666666654
No 18
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=35.08 E-value=3.3e+02 Score=26.61 Aligned_cols=13 Identities=8% Similarity=0.092 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 004748 38 LEFHSLQIKSKVQ 50 (732)
Q Consensus 38 l~~~~~~~k~~v~ 50 (732)
+...+.++-..+.
T Consensus 5 va~a~~em~~~i~ 17 (213)
T 3g67_A 5 VKERFVNLNRLFQ 17 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444433333
No 19
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.63 E-value=1.1e+02 Score=26.60 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=20.1
Q ss_pred CCCCCCChh---hHHHHHHHHHHHHHHHHHHHH
Q 004748 21 DQTAPLTAP---DLRLLISRLEFHSLQIKSKVQ 50 (732)
Q Consensus 21 ~~~~~l~~~---dl~~~i~~l~~~~~~~k~~v~ 50 (732)
|.+.|++.+ +|+.+|+.|..+..+++.++-
T Consensus 4 ~~~~~~~~e~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 4 EQSFLFSREEADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777 678888888888888887774
No 20
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.75 E-value=2.5e+02 Score=31.33 Aligned_cols=10 Identities=10% Similarity=0.119 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 004748 41 HSLQIKSKVQ 50 (732)
Q Consensus 41 ~~~~~k~~v~ 50 (732)
++++||.++-
T Consensus 65 rINELKnqLE 74 (562)
T 3ghg_A 65 RINKLKNSLF 74 (562)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 21
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=31.67 E-value=2e+02 Score=24.30 Aligned_cols=76 Identities=9% Similarity=0.089 Sum_probs=49.0
Q ss_pred hhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 57 HQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKE---VKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKG 133 (732)
Q Consensus 57 y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~---l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~ 133 (732)
..+|..+...+.++......+...|+.|.+.|.. ..+. -.++...|... +-+.++..-++-+.|..+...|..
T Consensus 10 ~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~--L~~~g~W~G~A~~ay~~~--~~~W~~~a~~l~~~L~~i~~~l~~ 85 (103)
T 4i0x_B 10 SFDLDHIEQVTSRARGFKEFVTENLDQLESRAQK--LVQSGQWAGAAAAAYSQA--HKEWMDAARELVEGLSQMEEAART 85 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTSSCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCeechHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888888888888888888755 2222 23445556653 334455555555666666666666
Q ss_pred HHH
Q 004748 134 VKE 136 (732)
Q Consensus 134 ~~~ 136 (732)
+..
T Consensus 86 a~~ 88 (103)
T 4i0x_B 86 AHG 88 (103)
T ss_dssp HHT
T ss_pred HHH
Confidence 544
No 22
>2b0h_A Talin-1; vinculin, helical bundle, VBS, structural protein; NMR {Mus musculus} SCOP: a.24.9.2
Probab=31.67 E-value=3e+02 Score=25.12 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHH-HH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSA-KM 108 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~-l~ 108 (732)
....+=.||-....+|-.-+.+|+.+...+=..+-..+.++...-..|-.+-.......++.++...|+..+.++=. -.
T Consensus 13 sfvdYQt~m~~~~K~iA~~aqemv~ks~~~p~eL~~la~~lt~~Y~~La~~~~~A~~~~~~~~v~~~Ir~~Vq~LG~ac~ 92 (137)
T 2b0h_A 13 SFVDYQTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCS 92 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSTHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhHHHH
Confidence 66667778888888888889999999888888888889999988888888888888888887777788888877621 11
Q ss_pred HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004748 109 KEARVKK----------ELLELVRAIVEIGERLKGVKEALRDG 141 (732)
Q Consensus 109 ~el~~~~----------~~~~~l~~l~~~~~~L~~~~~~l~~~ 141 (732)
.-++... .-.++.+.-+.+.+.+..+-.+|..|
T Consensus 93 ~lV~~ag~~q~~p~d~~~q~eL~~~aR~VsEkVs~vLAALqaG 135 (137)
T 2b0h_A 93 ALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVLAALQAG 135 (137)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111000 01244455566666666666666655
No 23
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=27.99 E-value=1.9e+02 Score=23.66 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHhHHHH
Q 004748 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEI 77 (732)
Q Consensus 28 ~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~ 77 (732)
++|+..++.+|...++-++-+..-.+..+-+-=..+.+|...+..++...
T Consensus 2 ~~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 2 AMGLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 57899999999999999998888666655555566677777777777653
No 24
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=27.10 E-value=2.1e+02 Score=21.80 Aligned_cols=11 Identities=9% Similarity=0.136 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 004748 122 RAIVEIGERLK 132 (732)
Q Consensus 122 ~~l~~~~~~L~ 132 (732)
+.....++||+
T Consensus 39 ~eA~RAN~RlD 49 (52)
T 1jcd_A 39 DDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 33444444444
No 25
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina arenicola} SCOP: a.1.1.2
Probab=26.56 E-value=2.1e+02 Score=25.98 Aligned_cols=91 Identities=10% Similarity=0.036 Sum_probs=57.1
Q ss_pred cCCCCCCCCCCChhhHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhH-----------HHHhHHHHHHhH
Q 004748 16 THDLTDQTAPLTAPDLR---LLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCND-----------TVSRTDEISTDL 81 (732)
Q Consensus 16 ~~~~~~~~~~l~~~dl~---~~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~-----------~~~~~~~~~~~~ 81 (732)
.++-.||.++||+++.. ..-.++.....++=.+++..+=..|-+....|..-.+ ...+...+-.-+
T Consensus 3 ~~~~~~~~~~lt~~~~~~i~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al 82 (158)
T 1hlb_A 3 GTLAIQAQGDLTLAQKKIVRKTWHQLMRNKTSFVTDVFIRIFAYDPSAQNKFPQMAGMSASQLRSSRQMQAHAIRVSSIM 82 (158)
T ss_dssp CTTCSCCCSCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHCTHHHHTSGGGTTCCHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHCHHHHHHhhhhcCCCHHHHhcCHHHHHHHHHHHHHH
Confidence 34456999999998743 3344444455668889999999999888777776433 334555566666
Q ss_pred HHHHhhhcCCcccchHHHHHHHHHHHHHH
Q 004748 82 SDILGLISYRPIDKEVKEIIDEVSAKMKE 110 (732)
Q Consensus 82 ~~l~~~i~~~~~~~~l~~~~~~~~~l~~e 110 (732)
+.+...|.+ ..+...+.++...+..
T Consensus 83 ~~~v~~ld~----~~l~~~l~~L~~~H~~ 107 (158)
T 1hlb_A 83 SEYVEELDS----DILPELLATLARTHDL 107 (158)
T ss_dssp HHHHTTCCT----TSHHHHTHHHHHHHHH
T ss_pred HHHHHHCCc----HHHHHHHHHHHHHhhc
Confidence 666655533 3355555555544443
No 26
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=26.48 E-value=1.8e+02 Score=26.86 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=51.3
Q ss_pred HHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH---HHHHHHHHHH
Q 004748 77 ISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRL---RFAAEELREL 153 (732)
Q Consensus 77 ~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~---~~Aa~~Le~~ 153 (732)
+-+.++.|...|.++ +...++...++.+..+..+..++...+...+.+..++. .|++ .+..+.+.++
T Consensus 9 I~d~A~eL~~aI~es-------eeyk~yk~A~~~i~~D~eaq~li~eF~~~Q~~~~~~q~---~Gk~~~~~e~~~el~~l 78 (151)
T 2pih_A 9 IVQQARNLAKMISET-------EEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKH---YEKHEALKQVEAKIDAL 78 (151)
T ss_dssp HHHHHHHHHHHHTTB-------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH---cCCccchHHHHHHHHHH
Confidence 444555556666552 66778888888999999999888888888887777776 5654 4555556666
Q ss_pred HHHhhcC
Q 004748 154 KKDLRVG 160 (732)
Q Consensus 154 ~~~l~~~ 160 (732)
+..++..
T Consensus 79 ~~~l~~n 85 (151)
T 2pih_A 79 QEELEEI 85 (151)
T ss_dssp HHHHHHS
T ss_pred HHHHHcC
Confidence 6665554
No 27
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=25.01 E-value=4.2e+02 Score=24.65 Aligned_cols=127 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHH
Q 004748 23 TAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQD---FASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKE 99 (732)
Q Consensus 23 ~~~l~~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y~~---f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~ 99 (732)
..|=+-+.|.....+|.. .++|+..+.....--+.+ -.+....|.....++..+...+..+..++++ ....+.+
T Consensus 29 l~~gE~eeLe~e~~rL~n-ae~l~~~~~~a~~~L~~~e~~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~--a~~~l~d 105 (175)
T 4abx_A 29 PDPGEEEGLNTELSRLSN-LHTIAQAAAGGVELLSDGDLNAAGLIGEAVRALNAGAKYDETVMQLQNELRA--ALESVQA 105 (175)
T ss_dssp CCTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCChHHHHHHHHHHHHC-HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhChhHHHHHHHHHH--HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcC-cHHHHHHHHHHHHHHhh
Q 004748 100 IIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEA-LRDG-RLRFAAEELRELKKDLR 158 (732)
Q Consensus 100 ~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~-l~~~-~~~~Aa~~Le~~~~~l~ 158 (732)
+..++......+.++- +.+.++..||...+.. .+.| .+.+-+...++++..|.
T Consensus 106 ~~~~L~~y~~~le~DP------~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~ 160 (175)
T 4abx_A 106 IAGELRDVAEGSAADP------EALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELA 160 (175)
T ss_dssp HHHHHHHHHHTCCCCH------HHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCH------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
No 28
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=24.36 E-value=2.3e+02 Score=30.88 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=8.7
Q ss_pred HHHHHHhhhhhhhhhh
Q 004748 49 VQSYIASHHQDFASLF 64 (732)
Q Consensus 49 v~~~i~~~y~~f~~~~ 64 (732)
+...|.+.|.-+..+.
T Consensus 42 l~~~l~~ff~alq~la 57 (463)
T 2d4y_A 42 LSGSLQSFFTSLQTLV 57 (463)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5555555555555443
No 29
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.19 E-value=1.2e+02 Score=23.20 Aligned_cols=17 Identities=6% Similarity=0.038 Sum_probs=6.9
Q ss_pred HHHhHHHHHHhHHHHHh
Q 004748 70 TVSRTDEISTDLSDILG 86 (732)
Q Consensus 70 ~~~~~~~~~~~~~~l~~ 86 (732)
|.++|..|+.+++.|.+
T Consensus 9 Lss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 9 ASSDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 30
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=22.18 E-value=1.4e+02 Score=19.46 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004748 30 DLRLLISRLEFHSLQIKSKVQSYIAS 55 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~~~i~~ 55 (732)
.|+.++..++.+..++|+.|-+.+.+
T Consensus 3 qlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999887764
No 31
>1hlm_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.90A {Caudina arenicola} SCOP: a.1.1.2
Probab=21.60 E-value=2.8e+02 Score=25.03 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=47.2
Q ss_pred cCCCCCCCCCCChhhHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhH-----------HHHhHHHHHHhH
Q 004748 16 THDLTDQTAPLTAPDLRL---LISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCND-----------TVSRTDEISTDL 81 (732)
Q Consensus 16 ~~~~~~~~~~l~~~dl~~---~i~~l~~~~~~~k~~v~~~i~~~y~~f~~~~~~~~~-----------~~~~~~~~~~~~ 81 (732)
+++..||.++||+++... .-.++.....++=.+++..+-..|-+..+.|..-.+ ...+...+-.-+
T Consensus 3 ~~~~~d~~~~lt~~~~~~i~~sw~~v~~~~~~~g~~~y~rlf~~~P~~~~~F~~~~d~~~~~l~~~~~~~~h~~~v~~~l 82 (159)
T 1hlm_A 3 ATQSFQSVGDLTPAEKDLIRSTWDQLMTHRTGFVADVFIRIFHNDPTAQRKFPQMAGLSPAELRTSRQMHAHAIRVSALM 82 (159)
T ss_dssp CCCCCSCSCCSCHHHHHHHHHHHHHHTSCTHHHHHHHHHHHTTTCSTTTTSSTTTTTSCSTTCSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHCHHHHHhcccccCCCHHHHhcCHHHHHHHHHHHHHH
Confidence 344569999999997654 333444455777888888888888877777766433 344555555555
Q ss_pred HHHHhhh
Q 004748 82 SDILGLI 88 (732)
Q Consensus 82 ~~l~~~i 88 (732)
..+...+
T Consensus 83 ~~~v~~l 89 (159)
T 1hlm_A 83 TTYIDEM 89 (159)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 5555444
No 32
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=21.46 E-value=3.6e+02 Score=26.24 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhhhhhhhhhHHHHhHHHHHHhHH
Q 004748 28 APDLRLLISRLEFHSLQIKSKVQSYIASHH------QDFASLFSLCNDTVSRTDEISTDLS 82 (732)
Q Consensus 28 ~~dl~~~i~~l~~~~~~~k~~v~~~i~~~y------~~f~~~~~~~~~~~~~~~~~~~~~~ 82 (732)
.+.+...|..++++..+++.+|...+.+.+ .++..+.....+.++.++++..-+.
T Consensus 58 ~~~~~~~I~~lE~~aD~i~~~i~~~L~~~fitP~dReDI~~L~~~lDdI~D~ie~~a~~l~ 118 (227)
T 3l39_A 58 RADYYKQIKDMEREGDRLTHLIFDELSTTFITPFDREDIHDLASCMDDVIDGINSSAKRIV 118 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457889999999999999999999999865 3566666666666666666655554
No 33
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=21.26 E-value=1.8e+02 Score=23.80 Aligned_cols=76 Identities=9% Similarity=0.032 Sum_probs=40.3
Q ss_pred hhhhhhhhhhhHHHHhHHHHHHhHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004748 58 QDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKE 136 (732)
Q Consensus 58 ~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~ 136 (732)
.+|..+...+.++......+...++.|.+.+.. ....=-.++...|.. ..-+.++..-.+-+.|..+...|..+..
T Consensus 5 v~~~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~-l~~~W~G~A~~af~~--~~~~w~~~~~~~~~~L~~i~~~l~~~~~ 80 (94)
T 3fav_B 5 WNFAGIEAAASAIQGNVTSIHSLLDEGKQSLTK-LAAAWGGSGSEAYQG--VQQKWDATATELNNALQNLARTISEAGQ 80 (94)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TGGGGTCTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcccCcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667777777777777777777777654 111111223344554 3333444444455556666666655544
No 34
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=21.05 E-value=3e+02 Score=23.38 Aligned_cols=21 Identities=0% Similarity=0.180 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 004748 30 DLRLLISRLEFHSLQIKSKVQ 50 (732)
Q Consensus 30 dl~~~i~~l~~~~~~~k~~v~ 50 (732)
+.+..+..-+..++++...+.
T Consensus 16 ~fe~rL~~Yr~~IeelE~~L~ 36 (93)
T 3t98_B 16 QFEVQLQQYRQQIEELENHLA 36 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554443
No 35
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=20.19 E-value=5.8e+02 Score=24.43 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004748 29 PDLRLLISRLEFHSLQIKSKVQSYIASHH 57 (732)
Q Consensus 29 ~dl~~~i~~l~~~~~~~k~~v~~~i~~~y 57 (732)
+.+...|.+++++..+++.+|..++.+-+
T Consensus 49 ~~~~~~i~~~E~~aD~l~~~I~~~L~~~~ 77 (227)
T 2olt_A 49 VQIRKQISLAEKQGDSLKREIRLTLPSGL 77 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 46778888889999999999988887654
Done!