Query 004752
Match_columns 732
No_of_seqs 329 out of 1902
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 04:40:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 100.0 1.5E-55 5.2E-60 527.8 49.1 504 19-707 65-581 (802)
2 2z86_A Chondroitin synthase; G 99.8 8.3E-19 2.9E-23 203.9 16.5 210 93-478 91-336 (625)
3 3bcv_A Putative glycosyltransf 99.8 4.5E-18 1.5E-22 172.4 17.0 109 93-312 3-111 (240)
4 1xhb_A Polypeptide N-acetylgal 99.8 2.4E-18 8.2E-23 193.6 15.0 238 91-502 25-300 (472)
5 1qg8_A Protein (spore coat pol 99.7 4E-18 1.4E-22 174.6 10.9 219 95-490 1-235 (255)
6 2d7i_A Polypeptide N-acetylgal 99.7 7E-17 2.4E-21 186.5 17.0 239 91-502 108-378 (570)
7 2ffu_A Ppgalnact-2, polypeptid 99.7 4.2E-17 1.4E-21 185.1 13.3 112 91-312 62-173 (501)
8 2z86_A Chondroitin synthase; G 99.7 1.4E-16 4.8E-21 185.2 11.5 219 93-493 373-596 (625)
9 3ckj_A Putative uncharacterize 99.6 1.4E-15 4.6E-20 163.6 13.0 122 92-325 45-169 (329)
10 4fix_A UDP-galactofuranosyl tr 99.5 2.2E-14 7.6E-19 168.0 10.3 116 93-312 178-295 (657)
11 3l7i_A Teichoic acid biosynthe 99.5 1.8E-15 6E-20 179.5 0.0 194 95-464 2-199 (729)
12 2fy7_A Beta-1,4-galactosyltran 99.4 3.4E-13 1.2E-17 142.7 11.0 62 434-495 189-263 (287)
13 3f1y_A Mannosyl-3-phosphoglyce 99.4 2.3E-12 7.8E-17 141.9 15.3 121 93-324 92-216 (387)
14 2nxv_A ATP synthase subunits r 99.1 1.3E-09 4.6E-14 112.2 14.2 50 268-322 62-112 (249)
15 2bo4_A Mannosylglycerate synth 98.7 2.2E-07 7.7E-12 102.3 16.5 42 265-311 73-119 (397)
16 2zu9_A Mannosyl-3-phosphoglyce 98.0 2.9E-05 1E-09 84.8 11.9 37 266-308 143-182 (394)
17 2wvl_A Mannosyl-3-phosphoglyce 97.9 4.3E-05 1.5E-09 81.8 12.1 44 93-145 51-94 (391)
18 1fo8_A Alpha-1,3-mannosyl-glyc 97.7 4.9E-05 1.7E-09 82.0 8.3 46 94-144 1-46 (343)
19 3lw6_A FI08434P, beta-4-galact 87.7 2.6 8.8E-05 43.8 10.4 33 265-299 96-128 (287)
20 3q80_A 2-C-methyl-D-erythritol 37.8 52 0.0018 32.6 6.6 45 268-312 83-127 (231)
21 2j0a_A Beta-1,3-N-acetylglucos 36.5 46 0.0016 34.1 6.0 30 283-314 92-121 (280)
22 3d5n_A Q97W15_sulso; NESG, SSR 33.8 73 0.0025 30.2 6.7 41 266-310 71-112 (197)
23 2y6p_A 3-deoxy-manno-octuloson 20.3 1.1E+02 0.0037 29.4 5.2 41 266-312 72-113 (234)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=100.00 E-value=1.5e-55 Score=527.80 Aligned_cols=504 Identities=20% Similarity=0.276 Sum_probs=377.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCC-CchhHHHHHHHHHHHHHHHHHHHHHHhhheeeccccCCCCCCCCCCCCCce
Q 004752 19 INRLHALLHCIAIGFLIYYRASYLLQET-RAIPIILWLLVFASELLLSFIWLLGRAYLWRPVSRTVFPERLPEDDKLPAI 97 (732)
Q Consensus 19 ~~r~~~~~~~~~~~~yl~wR~~~~l~~~-~~~~~~~w~~~~~~E~~~~~~~~l~~~~~~~p~~r~~~~~~l~~~~~~P~V 97 (732)
+..+++++.+++.+.|++||++.+++.. .+...+++++++++|++..+.|+++.+..++|..|...++. .+++.|+|
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~--~~~~~P~V 142 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL--QPEELPTV 142 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC--CTTTCCCE
T ss_pred hHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC--CccCCCcE
Confidence 3444444555567789999999999853 36677889999999999999999999999999988766543 35678999
Q ss_pred EEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchHhHHHHHHhhhcchhhhhhcCccccCcccccc
Q 004752 98 DVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTICPQAYFS 177 (732)
Q Consensus 98 dV~I~t~~pynEp~~~v~~Tv~s~~~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~p~~yf~ 177 (732)
+|+||| |||+++++++|+.|+++++||.++++|+|+|||++|.|.+.
T Consensus 143 SViIPt---yNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~------------------------------ 189 (802)
T 4hg6_A 143 DILVPS---YNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS------------------------------ 189 (802)
T ss_dssp EEEEEC---TTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC------------------------------
T ss_pred EEEEEE---CCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc------------------------------
Confidence 999999 99998888999999999999999999999999999977531
Q ss_pred cCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCcchhhhhhhcccCcchhhhhccccCcCcEEEEec
Q 004752 178 EADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEQIIQETFGESETIRQADLVEMPLLVYVSR 257 (732)
Q Consensus 178 ~~~~~~~~~~~~~~~e~~~~k~~ye~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~yv~R 257 (732)
.+++.+++..+..+..+++..+ .++.|+.|
T Consensus 190 --------~d~~i~~~~~~~~~~l~~~~~~------------------------------------------~~v~~i~~ 219 (802)
T 4hg6_A 190 --------PDPELAQKAQERRRELQQLCRE------------------------------------------LGVVYSTR 219 (802)
T ss_dssp --------SSHHHHHHHHHHHHHHHHHHHH------------------------------------------HTCEEEEC
T ss_pred --------CCHHHHHHHHhhhHHHHHHHHh------------------------------------------cCcEEEEe
Confidence 1122222211111111111111 14678888
Q ss_pred ccCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhc-CCCCCCcEEEEccCcccccCCCC--
Q 004752 258 EKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKISSSLAFVQFPQKFHNINKY-- 334 (732)
Q Consensus 258 ekrp~~~~~~KAGaLN~~l~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~-D~~~~~~vg~VQ~Pq~f~n~~~~-- 334 (732)
+++ +++|+||+|.+++. ++||||+++|||++++ ||++++++.+|. || ++++||+++.+.|.+..
T Consensus 220 ~~~----~~GKa~alN~gl~~----a~gd~Il~lDaD~~~~-pd~L~~lv~~~~~dp----~v~~V~~~~~~~~~~~~~~ 286 (802)
T 4hg6_A 220 ERN----EHAKAGNMSAALER----LKGELVVVFDADHVPS-RDFLARTVGYFVEDP----DLFLVQTPHFFINPDPIQR 286 (802)
T ss_dssp SSC----CSHHHHHHHHHHHH----CCCSEEEECCTTEEEC-TTHHHHHHHHHHHSS----SCCEEECCCCBSSCCHHHH
T ss_pred cCC----CCcchHHHHHHHHh----cCCCEEEEECCCCCcC-hHHHHHHHHHHhcCC----CeEEEeccEEEeCCchHhh
Confidence 775 68999999999999 8999999999999997 999999999994 66 48999999999875310
Q ss_pred -----chHHHHHHHHHHHHHHHHhhcCCccceeccEEEechhccccccchhhhhccCCchhhhhhhhhhhcccCCCCCCc
Q 004752 335 -----DIYDGRFRSAYCVQWQGMDGLKGPVLSGTGYYIKRESLYADFTHTELKDTFGKSNVLINSLHQSYKQNNANGENF 409 (732)
Q Consensus 335 -----d~~~~~~~~f~~~~~~g~d~~~~~~~~Gtg~~~RR~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (732)
+.+.++...++...+.+.+.+++++++|+++++||+++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~----------------------------------- 331 (802)
T 4hg6_A 287 NLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDE----------------------------------- 331 (802)
T ss_dssp HHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHH-----------------------------------
T ss_pred hhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHHH-----------------------------------
Confidence 1122334678899999999999999999999999999963
Q ss_pred hhhHHHhhccccccceeccccccccccccCCCccchHHHHHHHHhCCCeEEEeCCCCCeeEeccCCChHHHhhhhhcccc
Q 004752 410 SNVLQEETGVLASCSYEHQTKWGEEVGILYQSVSEDLFTGFILHCKGWTSTYLTPFRPQFLGTSTTNLNDLLIQGTRWGS 489 (732)
Q Consensus 410 ~~~~~~~~~~v~~c~ye~~t~~g~~~G~~~~svtED~~t~~~l~~~Gwrsvy~~~~~~~~~g~aP~~l~~~~~Qr~RWa~ 489 (732)
.+||++++++||.+++++++++||+++|+++ +.+.+.+|++++++++||.||++
T Consensus 332 ------------------------vGgf~~~~~~ED~~l~~rl~~~G~ri~~~~~--~~~~~~~p~t~~~~~~Qr~RW~~ 385 (802)
T 4hg6_A 332 ------------------------AGGFAGETITEDAETALEIHSRGWKSLYIDR--AMIAGLQPETFASFIQQRGRWAT 385 (802)
T ss_dssp ------------------------HTTCCCSSSSHHHHHHHHHHTTTCCEEECCC--CCEEECCCCSHHHHHHHHHHHHH
T ss_pred ------------------------cCCcCCCCcchHHHHHHHHHHcCCeEEEecC--CEEEecCCCCHHHHHHHHHHHHc
Confidence 4689999999999999999999999999985 89999999999999999999999
Q ss_pred CcccccccccCccccCCCCCChhhHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHcCCccccccCchhHHHHHHHHHHHHH
Q 004752 490 GLTDVGLSRFCPLLYGPSRMSLLQSMCYGELSFFPLLYCLPLWCLATLPQLCLLNGISLYPEVSSPSFIVFSFIFISAIC 569 (732)
Q Consensus 490 G~~qi~~~~~~pl~~~~~~l~~~qrl~y~~~~~~~~l~~~~~l~~~~~P~~~Ll~g~~~~~~~~~~~~~~~~~~~~~~~~ 569 (732)
|.+|+++. ++|++. +++++.||++|+...+++ +.+++.++++++|++++++|..++......++.+ ++++++
T Consensus 386 G~~q~l~~-~~pl~~--~~l~~~~rl~~l~~~~~~-~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~----~lp~~l 457 (802)
T 4hg6_A 386 GMMQMLLL-KNPLFR--RGLGIAQRLCYLNSMSFW-FFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAY----MPGYLA 457 (802)
T ss_dssp HHHHHHHH-SCTTSC--SSCCHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHH----HHHHHH
T ss_pred cHHHHHHH-hCcccc--CCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHH----HHHHHH
Confidence 99999984 578764 689999999999988887 8889999999999999999998876533222222 222222
Q ss_pred HHHHH-HHHhCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeccCCcchhhhhhhcccceeecccchhh
Q 004752 570 KHLQE-VISTGGSIYAWRNEQRIWMIKSVTAHFYGSMDTILKLLGLRKASFLPTNKVLDKEQVKRYEMGQFDFQTSSMFL 648 (732)
Q Consensus 570 ~~~l~-~~~~g~~~~~ww~~~~~w~i~~~~~~l~~~~~~l~~~l~~~~~~F~VT~K~~~~~~~~~~~~~~f~f~~~~~l~ 648 (732)
...+- ....+.....||.. .++ +...++.+...+..++++++.+|+||+|+.+.+. .. .+.++
T Consensus 458 ~~~~~~~~~~~~~r~~~~~~-l~~----~~~~~~~~~a~l~~l~~~~~~~f~VT~Kg~~~~~------~~-----~~~~~ 521 (802)
T 4hg6_A 458 VSFLVQNALFARQRWPLVSE-VYE----VAQAPYLARAIVTTLLRPRSARFAVTAKDETLSE------NY-----ISPIY 521 (802)
T ss_dssp HHHHHHHHHHTTTSCTTHHH-HHH----HHHHHHHHHHHHHHHHSTTCCCCCCCCCCCCCSS------CC-----BCTTC
T ss_pred HHHHHHHHHhcCcHHHHHHH-HHH----HHHHHHHHHHHHHHHhCCCCCcceECCCCccccc------cc-----hhhHH
Confidence 11111 11224333345543 222 2233444555566678889999999999986543 11 12567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHhh---hcCCCC
Q 004752 649 VPMVSLMILNMAALLCGFIRIIAVGNWDKLFPQLLLSLYILIINFAIVEGMIV---RKDKGR 707 (732)
Q Consensus 649 ~p~~~l~~l~l~al~~g~~r~~~~g~~~~~~~~~~~~~w~vv~l~p~~~al~~---r~~~~~ 707 (732)
+|+.++++++++++++|++++..... .....++.+.|++++++.+.-++.. |+.+++
T Consensus 522 ~p~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~w~~~~l~~l~~~~~~~~~~~~~R~ 581 (802)
T 4hg6_A 522 RPLLFTFLLCLSGVLATLVRWVAFPG--DRSVLLVVGGWAVLNVLLVGFALRAVAEKQQRRA 581 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHTTTBCCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC--ccchhhhhhHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 89999999999999999999875422 2223344455555555544444444 444444
No 2
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.78 E-value=8.3e-19 Score=203.95 Aligned_cols=210 Identities=17% Similarity=0.147 Sum_probs=147.5
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchHhHHHHHHhhhcchhhhhhcCccccCc
Q 004752 93 KLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTICP 172 (732)
Q Consensus 93 ~~P~VdV~I~t~~pynEp~~~v~~Tv~s~~~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~p 172 (732)
..|.|+|+||| |||+ +.+.+|+.|+++++||. .++|+|+|||++|.|.+.+.+ +.
T Consensus 91 ~~p~vsviIp~---~n~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~~--------------~~------ 145 (625)
T 2z86_A 91 IIDGLSIVIPT---YNRA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVRE--------------FE------ 145 (625)
T ss_dssp CCCCEEEEEEE---SSCH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHHT--------------TT------
T ss_pred cCCcEEEEEec---CCcH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHHHH--------------hh------
Confidence 35899999999 9997 89999999999999885 699999999999976432110 00
Q ss_pred ccccccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCcchhhhhhhcccCcchhhhhccccCcCcE
Q 004752 173 QAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEQIIQETFGESETIRQADLVEMPLL 252 (732)
Q Consensus 173 ~~yf~~~~~~~~~~~~~~~~e~~~~k~~ye~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~p~l 252 (732)
..+++
T Consensus 146 ---------------------------------------------------------------------------~~~~i 150 (625)
T 2z86_A 146 ---------------------------------------------------------------------------SLLNI 150 (625)
T ss_dssp ---------------------------------------------------------------------------TTSCE
T ss_pred ---------------------------------------------------------------------------hcCCe
Confidence 01357
Q ss_pred EEEecccCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhc-CCCCCCcEEEEccCcccccC
Q 004752 253 VYVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKISSSLAFVQFPQKFHNI 331 (732)
Q Consensus 253 ~yv~Rekrp~~~~~~KAGaLN~~l~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~-D~~~~~~vg~VQ~Pq~f~n~ 331 (732)
.|+.++++ .++|++|+|.|++. ++||+|+++|+|+++. |++|.+++..|. +| .++.|+..+.+.+.
T Consensus 151 ~~i~~~~~----~~g~~~a~N~g~~~----a~g~~v~~lD~D~~~~-~~~l~~~~~~~~~~~----~~~~~g~~~~~~~~ 217 (625)
T 2z86_A 151 KYVRQKDY----GYQLCAVRNLGLRA----AKYNYVAILDCDMAPN-PLWVQSYMELLAVDD----NVALIGPRKYIDTS 217 (625)
T ss_dssp EEEEECCC----SCCHHHHHHHHHHH----CCSSEEEEECTTEEEC-TTHHHHHHHHHHHCT----TEEEECCEEEECCT
T ss_pred EEEEeCCC----CcchhHHHHHHHHh----CCcCEEEEECCCCCCC-HHHHHHHHHHHhcCC----ceEEEEeeeeccCc
Confidence 78876542 45899999999999 8999999999999997 999999999886 34 47888766554432
Q ss_pred CCCchHHHHH---------------HHHHH------------HHHHHHhhc---CC--ccceeccEEEechhccccccch
Q 004752 332 NKYDIYDGRF---------------RSAYC------------VQWQGMDGL---KG--PVLSGTGYYIKRESLYADFTHT 379 (732)
Q Consensus 332 ~~~d~~~~~~---------------~~f~~------------~~~~g~d~~---~~--~~~~Gtg~~~RR~AL~~~~~~~ 379 (732)
. . .+.... ..+.. ......+.. .. ..++|+++++||+++..
T Consensus 218 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~l~~----- 290 (625)
T 2z86_A 218 K-H-TYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFR----- 290 (625)
T ss_dssp T-C-CHHHHHHSTTGGGTSCC---------------CCCTHHHHHHHTTTTTTCSCGGGGCCTTEEEEETHHHHH-----
T ss_pred c-c-chhhcccchHHhhhcchhccCCchhhhhccCCccccchhhhcccccccccCCceeEEeeceeeeEHHHHHH-----
Confidence 1 0 000000 00000 000001111 11 24789999999999862
Q ss_pred hhhhccCCchhhhhhhhhhhcccCCCCCCchhhHHHhhccccccceeccccccccccccCCCc---cchHHHHHHHHhCC
Q 004752 380 ELKDTFGKSNVLINSLHQSYKQNNANGENFSNVLQEETGVLASCSYEHQTKWGEEVGILYQSV---SEDLFTGFILHCKG 456 (732)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~c~ye~~t~~g~~~G~~~~sv---tED~~t~~~l~~~G 456 (732)
.+||+++.. .||.++++|++.+|
T Consensus 291 ------------------------------------------------------iGgfde~~~~~g~ED~dl~~Rl~~~G 316 (625)
T 2z86_A 291 ------------------------------------------------------AGWFDEEFTHWGGEDNEFGYRLYREG 316 (625)
T ss_dssp ------------------------------------------------------HCCCCTTCSSCCCHHHHHHHHHHHTT
T ss_pred ------------------------------------------------------hCCCccccccCCcchhhhhhhHHhCC
Confidence 456877654 59999999999999
Q ss_pred CeEEEeCCCCCeeEeccCCChH
Q 004752 457 WTSTYLTPFRPQFLGTSTTNLN 478 (732)
Q Consensus 457 wrsvy~~~~~~~~~g~aP~~l~ 478 (732)
|++.|++. +.+....|.+-.
T Consensus 317 ~~i~~~p~--~~v~H~~~~~~~ 336 (625)
T 2z86_A 317 CYFRSVEG--AMAYHQEPPGKE 336 (625)
T ss_dssp CEEEECGG--GCEEEECCC---
T ss_pred ceEEEccc--chhhccCCcccc
Confidence 99999985 667666666544
No 3
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.77 E-value=4.5e-18 Score=172.39 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=90.6
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchHhHHHHHHhhhcchhhhhhcCccccCc
Q 004752 93 KLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTICP 172 (732)
Q Consensus 93 ~~P~VdV~I~t~~pynEp~~~v~~Tv~s~~~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~p 172 (732)
..|.|+|+||+ ||++ +.+.+||.|+++++||. ++|+|+|||++|.|.+.+.+.+
T Consensus 3 ~~p~vsViIp~---yn~~-~~l~~~l~Sl~~q~~~~--~eiIvvDd~S~d~t~~~~~~~~-------------------- 56 (240)
T 3bcv_A 3 LIPKVSVIVPI---YNVE-KYLDQCVQALLAQTLSD--IEIILIDDESPDNCPKICDDYA-------------------- 56 (240)
T ss_dssp CCCSEEEEEEE---SSCT-TTHHHHHHHHHTCSSSS--EEEEEEECCCSSSHHHHHHHHH--------------------
T ss_pred CCCcEEEEEec---CCCH-HHHHHHHHHHHhCcCCC--eEEEEEECCCCcCHHHHHHHHH--------------------
Confidence 36899999999 9998 88999999999999985 9999999999997754322110
Q ss_pred ccccccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCcchhhhhhhcccCcchhhhhccccCcCcE
Q 004752 173 QAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEQIIQETFGESETIRQADLVEMPLL 252 (732)
Q Consensus 173 ~~yf~~~~~~~~~~~~~~~~e~~~~k~~ye~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~p~l 252 (732)
...|++
T Consensus 57 --------------------------------------------------------------------------~~~~~i 62 (240)
T 3bcv_A 57 --------------------------------------------------------------------------AQYPNI 62 (240)
T ss_dssp --------------------------------------------------------------------------HHCSSE
T ss_pred --------------------------------------------------------------------------hhCCCE
Confidence 012457
Q ss_pred EEEecccCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhcC
Q 004752 253 VYVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLD 312 (732)
Q Consensus 253 ~yv~Rekrp~~~~~~KAGaLN~~l~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D 312 (732)
.++.. + +.++++|.|.|++. ++||||+++|+|.++. |++|.+++..+.+
T Consensus 63 ~~i~~-~-----n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~~~-~~~l~~l~~~~~~ 111 (240)
T 3bcv_A 63 KVIHK-K-----NAGLGMACNSGLDV----ATGEYVAFCDSDDYVD-SDMYMTMYNVAQK 111 (240)
T ss_dssp EEEEC-C-----CCCHHHHHHHHHHH----CCSSEEEECCTTCCCC-TTHHHHHHHHHHH
T ss_pred EEEEC-C-----CCChHHHHHHHHHH----cCCCEEEEECCCCcCC-HHHHHHHHHHHHh
Confidence 77753 2 47899999999999 8999999999999987 9999999998875
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.76 E-value=2.4e-18 Score=193.56 Aligned_cols=238 Identities=15% Similarity=0.070 Sum_probs=157.9
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCcc-chHhHHHHHHhhhcchhhhhhcCccc
Q 004752 91 DDKLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPI-TLHGMREACRFAKWWLPFCRRYGIKT 169 (732)
Q Consensus 91 ~~~~P~VdV~I~t~~pynEp~~~v~~Tv~s~~~~dYP~~kl~v~v~DDg~~~~-T~~~l~Ea~~fa~~w~pfc~~~~v~~ 169 (732)
++.+|.|+|+||+ |||+.+.+.+||.|+++++||....+|+|+|||++|. |.+.+.+..
T Consensus 25 ~~~~p~vSVIIp~---yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~----------------- 84 (472)
T 1xhb_A 25 PDNLPTTSVVIVF---HNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYV----------------- 84 (472)
T ss_dssp CSCCCCEEEEEEE---SSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHH-----------------
T ss_pred CcCCCCeEEEEEe---CCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHH-----------------
Confidence 4568999999999 9998788999999999999997678999999999984 543322210
Q ss_pred cCcccccccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCcchhhhhhhcccCcchhhhhccccCc
Q 004752 170 ICPQAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEQIIQETFGESETIRQADLVEM 249 (732)
Q Consensus 170 r~p~~yf~~~~~~~~~~~~~~~~e~~~~k~~ye~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
..+
T Consensus 85 -----------------------------------------------------------------------------~~~ 87 (472)
T 1xhb_A 85 -----------------------------------------------------------------------------KKL 87 (472)
T ss_dssp -----------------------------------------------------------------------------HSS
T ss_pred -----------------------------------------------------------------------------HHC
Confidence 012
Q ss_pred C-cEEEEecccCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhc-CCCCCCcEEEEccCcc
Q 004752 250 P-LLVYVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKISSSLAFVQFPQK 327 (732)
Q Consensus 250 p-~l~yv~Rekrp~~~~~~KAGaLN~~l~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~-D~~~~~~vg~VQ~Pq~ 327 (732)
| ++.++..++| .++++|+|.|++. ++||||+++|+|..++ |++|.+++..+. ++ .++.+.. ..
T Consensus 88 ~~~v~vi~~~~n-----~G~~~a~N~g~~~----A~gd~i~flD~D~~~~-p~~L~~ll~~~~~~~----~~~v~~~-~~ 152 (472)
T 1xhb_A 88 KVPVHVIRMEQR-----SGLIRARLKGAAV----SRGQVITFLDAHCECT-AGWLEPLLARIKHDR----RTVVCPI-ID 152 (472)
T ss_dssp SSCEEEEECSSC-----CCHHHHHHHHHHH----CCSSEEEEEESSEEEC-TTCHHHHHHHHHHCT----TEEEEEE-EE
T ss_pred CCcEEEEECCCC-----CChHHHHHHHHHh----ccCCeEEEECCCeEeC-ccHHHHHHHHHHhCC----CEEEEee-ee
Confidence 4 5788876653 6799999999999 8999999999999987 999999999886 33 2333311 11
Q ss_pred cccCCCC------c----hHHHH----HHHH-HHHHHHHH-h---hcCCccceeccEEEechhccccccchhhhhccCCc
Q 004752 328 FHNINKY------D----IYDGR----FRSA-YCVQWQGM-D---GLKGPVLSGTGYYIKRESLYADFTHTELKDTFGKS 388 (732)
Q Consensus 328 f~n~~~~------d----~~~~~----~~~f-~~~~~~g~-d---~~~~~~~~Gtg~~~RR~AL~~~~~~~~~~~~~~~~ 388 (732)
..+.+.. . .+... .... ........ + ....+..+|++.++||+++..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~-------------- 218 (472)
T 1xhb_A 153 VISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQE-------------- 218 (472)
T ss_dssp EECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHH--------------
T ss_pred eEcCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHHH--------------
Confidence 1111000 0 00000 0000 00000000 1 223345677788899998852
Q ss_pred hhhhhhhhhhhcccCCCCCCchhhHHHhhccccccceeccccccccccccCCCc---cchHHHHHHHHhCCCeEEEeCCC
Q 004752 389 NVLINSLHQSYKQNNANGENFSNVLQEETGVLASCSYEHQTKWGEEVGILYQSV---SEDLFTGFILHCKGWTSTYLTPF 465 (732)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~c~ye~~t~~g~~~G~~~~sv---tED~~t~~~l~~~Gwrsvy~~~~ 465 (732)
.+||+++.. .||++.++|+...|+++.|++.
T Consensus 219 ---------------------------------------------iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~p~- 252 (472)
T 1xhb_A 219 ---------------------------------------------IGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTC- 252 (472)
T ss_dssp ---------------------------------------------TTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEEE-
T ss_pred ---------------------------------------------cCCCCCcccccCchhHHHHHHHHhcCCeEEEccC-
Confidence 456877644 7999999999999999999874
Q ss_pred CCeeE----eccCCC---------hHHHhhhhhccccCcccccccccCcc
Q 004752 466 RPQFL----GTSTTN---------LNDLLIQGTRWGSGLTDVGLSRFCPL 502 (732)
Q Consensus 466 ~~~~~----g~aP~~---------l~~~~~Qr~RWa~G~~qi~~~~~~pl 502 (732)
+... ...|.+ .....+...||..+..+.++. .+|.
T Consensus 253 -~~v~H~~~~~~~~~~~~~~~~~~~~n~~r~~~~W~d~~~~~~~~-~~p~ 300 (472)
T 1xhb_A 253 -SHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYI-ISPG 300 (472)
T ss_dssp -EEEEEEC------------CHHHHHHHHHHHHHHCGGGGHHHHH-TSTT
T ss_pred -cEEEEEccCcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh-hCcc
Confidence 3221 112221 345667777999998887764 3453
No 5
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.74 E-value=4e-18 Score=174.58 Aligned_cols=219 Identities=12% Similarity=0.058 Sum_probs=139.9
Q ss_pred CceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchHhHHHHHHhhhcchhhhhhcCccccCccc
Q 004752 95 PAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTICPQA 174 (732)
Q Consensus 95 P~VdV~I~t~~pynEp~~~v~~Tv~s~~~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~p~~ 174 (732)
|.|+|+||| ||++ +.+.+||.|+++++||. ++|+|+|||++|.|.+.+.+ +
T Consensus 1 p~vSViIp~---yn~~-~~l~~~l~Sl~~q~~~~--~eiivvDd~S~d~t~~~~~~--------------~--------- 51 (255)
T 1qg8_A 1 PKVSVIMTS---YNKS-DYVAKSISSILSQTFSD--FELFIMDDNSNEETLNVIRP--------------F--------- 51 (255)
T ss_dssp CCEEEEEEE---SSCT-TTHHHHHHHHHTCSCCC--EEEEEEECSCCHHHHHHHGG--------------G---------
T ss_pred CeEEEEEEc---CCCH-HHHHHHHHHHHhccCCc--eEEEEEECCCCchHHHHHHH--------------H---------
Confidence 789999999 9998 88999999999999995 99999999999966432110 0
Q ss_pred ccccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCcchhhhhhhcccCcchhhhhccccCcCcEEE
Q 004752 175 YFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEQIIQETFGESETIRQADLVEMPLLVY 254 (732)
Q Consensus 175 yf~~~~~~~~~~~~~~~~e~~~~k~~ye~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~y 254 (732)
. ..|++.|
T Consensus 52 --------------------------------------------------------~----------------~~~~i~~ 59 (255)
T 1qg8_A 52 --------------------------------------------------------L----------------NDNRVRF 59 (255)
T ss_dssp --------------------------------------------------------G----------------GSTTEEE
T ss_pred --------------------------------------------------------h----------------hcCCEEE
Confidence 0 0145788
Q ss_pred EecccCC---CCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhc-CCCCCCcEEEEccCcccc-
Q 004752 255 VSREKRP---EHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKISSSLAFVQFPQKFH- 329 (732)
Q Consensus 255 v~Rekrp---~~~~~~KAGaLN~~l~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~-D~~~~~~vg~VQ~Pq~f~- 329 (732)
+..+... ...+.++++|+|.|++. ++||||+++|+|.++. |++|.+++..+. +| ++++|.+.....
T Consensus 60 i~~~~~~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~~~-~~~l~~~~~~~~~~~----~~~~v~~~~~~~~ 130 (255)
T 1qg8_A 60 YQSDISGVKERTEKTRYAALINQAIEM----AEGEYITYATDDNIYM-PDRLLKMVRELDTHP----EKAVIYSASKTYH 130 (255)
T ss_dssp EECCCCSHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEEEC-TTHHHHHHHHHHHCT----TCCEEEEEEEEEE
T ss_pred EecccccccccccccCHHHHHHHHHHH----cCCCEEEEeCCCCccC-hHHHHHHHHHHHhCC----CceEEEeceEEEE
Confidence 8765100 00146899999999999 8999999999999997 999999999886 34 366676655443
Q ss_pred -cCCCCchHHHHHHHHHHHHHHHHhhcCCccceeccEEEechhccccccchhhhhccCCchhhhhhhhhhhcccCCCCCC
Q 004752 330 -NINKYDIYDGRFRSAYCVQWQGMDGLKGPVLSGTGYYIKRESLYADFTHTELKDTFGKSNVLINSLHQSYKQNNANGEN 408 (732)
Q Consensus 330 -n~~~~d~~~~~~~~f~~~~~~g~d~~~~~~~~Gtg~~~RR~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (732)
+.+.. ......... ...........+|++.++||+++..
T Consensus 131 ~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~rr~~~~~---------------------------------- 170 (255)
T 1qg8_A 131 LNENRD-IVKETVRPA-----AQVTWNAPCAIDHCSVMHRYSVLEK---------------------------------- 170 (255)
T ss_dssp EC---C-EEEEEEECC-----CSCBSCCTTTSCGGGEEEETHHHHH----------------------------------
T ss_pred eCCCCc-chhhccCch-----HHHHHhhcCCCccceEEEEHHHHHh----------------------------------
Confidence 22111 000000000 0001122345678999999999863
Q ss_pred chhhHHHhhccccccceeccccccccc-cc------c-CCCccchHHHHHHHHhCCCeEEEeCCCCCeeEeccCCChHHH
Q 004752 409 FSNVLQEETGVLASCSYEHQTKWGEEV-GI------L-YQSVSEDLFTGFILHCKGWTSTYLTPFRPQFLGTSTTNLNDL 480 (732)
Q Consensus 409 ~~~~~~~~~~~v~~c~ye~~t~~g~~~-G~------~-~~svtED~~t~~~l~~~Gwrsvy~~~~~~~~~g~aP~~l~~~ 480 (732)
.+ || . .....||.+..+++..+| +++|+++ ....+-..+.+....
T Consensus 171 -------------------------~g~~f~~~~~~~~~~~~~eD~~~~~r~~~~g-~~~~~~~-~~~~~r~~~~s~s~~ 223 (255)
T 1qg8_A 171 -------------------------VKEKFGSYWDESPAFYRIGDARFFWRVNHFY-PFYPLDE-ELDLNYITDQSIHFQ 223 (255)
T ss_dssp -------------------------HHHHHSSSSCCCGGGSTTHHHHHHHHHTTTC-CBEEEEE-EEEEEEEC-------
T ss_pred -------------------------hcccccccccCCcccchHHHHHHHHHHHHhC-CEEEecC-cEEEEEEcCCccchh
Confidence 22 34 2 224679999999999987 6888875 233444456666554
Q ss_pred h--hhhhccccC
Q 004752 481 L--IQGTRWGSG 490 (732)
Q Consensus 481 ~--~Qr~RWa~G 490 (732)
. .|+.||.+.
T Consensus 224 ~~~~~~~~~~~~ 235 (255)
T 1qg8_A 224 LFELEKNEFVRN 235 (255)
T ss_dssp -------CTGGG
T ss_pred HHHHHHHHHHHh
Confidence 4 455555443
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.71 E-value=7e-17 Score=186.46 Aligned_cols=239 Identities=14% Similarity=0.048 Sum_probs=156.9
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccc-hHhHHHHHHhhhcchhhhhhcCccc
Q 004752 91 DDKLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPIT-LHGMREACRFAKWWLPFCRRYGIKT 169 (732)
Q Consensus 91 ~~~~P~VdV~I~t~~pynEp~~~v~~Tv~s~~~~dYP~~kl~v~v~DDg~~~~T-~~~l~Ea~~fa~~w~pfc~~~~v~~ 169 (732)
++..|.|+|+||+ |||+.+.+.+||.|+++++||...++|+|+|||++|.| .+.+.+.+
T Consensus 108 ~~~~P~vSVIIp~---yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~----------------- 167 (570)
T 2d7i_A 108 LETLPNTSIIIPF---HNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYM----------------- 167 (570)
T ss_dssp ESSCCCEEEEEEE---SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHH-----------------
T ss_pred CCCCCCeEEEEEE---CCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHH-----------------
Confidence 3568999999999 99987889999999999999975679999999999987 32221110
Q ss_pred cCcccccccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCcchhhhhhhcccCcchhhhhccccCc
Q 004752 170 ICPQAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEQIIQETFGESETIRQADLVEM 249 (732)
Q Consensus 170 r~p~~yf~~~~~~~~~~~~~~~~e~~~~k~~ye~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
...
T Consensus 168 -----------------------------------------------------------------------------~~~ 170 (570)
T 2d7i_A 168 -----------------------------------------------------------------------------ALF 170 (570)
T ss_dssp -----------------------------------------------------------------------------TTS
T ss_pred -----------------------------------------------------------------------------HhC
Confidence 012
Q ss_pred CcEEEEecccCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhcCCCCCCcEEEEccCcccc
Q 004752 250 PLLVYVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFH 329 (732)
Q Consensus 250 p~l~yv~Rekrp~~~~~~KAGaLN~~l~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D~~~~~~vg~VQ~Pq~f~ 329 (732)
|++.++..++ +.++++|+|.|++. ++||||+++|+|..++ |++|.+++..+.+.. .++ |.....+.
T Consensus 171 ~~v~vi~~~~-----n~G~~~A~N~G~~~----A~gd~i~fLD~D~~~~-p~~L~~ll~~l~~~~---~~v-v~~~i~~~ 236 (570)
T 2d7i_A 171 PSVRILRTKK-----REGLIRTRMLGASV----ATGDVITFLDSHCEAN-VNWLPPLLDRIARNR---KTI-VCPMIDVI 236 (570)
T ss_dssp TTEEEEECSS-----CCCHHHHHHHHHHH----CCSSEEEECCSSEEEC-TTCSHHHHHHHHHCT---TEE-EEEEEEEE
T ss_pred CeEEEEECCC-----CCCHHHHHHHHHHh----cCCCEEEEEcCCcccc-ccHHHHHHHHHHhCC---CEE-Eeeeeecc
Confidence 5688887655 37899999999999 8999999999999996 999999999886432 232 32111111
Q ss_pred cCCC-------CchHHH--HHHHHHHHHH--------HHHhhcCCccceeccEEEechhccccccchhhhhccCCchhhh
Q 004752 330 NINK-------YDIYDG--RFRSAYCVQW--------QGMDGLKGPVLSGTGYYIKRESLYADFTHTELKDTFGKSNVLI 392 (732)
Q Consensus 330 n~~~-------~d~~~~--~~~~f~~~~~--------~g~d~~~~~~~~Gtg~~~RR~AL~~~~~~~~~~~~~~~~~~~~ 392 (732)
+.+. ...... ....++.... ........+..+|++.++||+++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~------------------ 298 (570)
T 2d7i_A 237 DHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWE------------------ 298 (570)
T ss_dssp CTTTCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHH------------------
T ss_pred CCCchhhccccCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHHHh------------------
Confidence 1100 000000 0000000000 0001112344567788888888752
Q ss_pred hhhhhhhcccCCCCCCchhhHHHhhccccccceeccccccccccccCCCc---cchHHHHHHHHhCCCeEEEeCCCCCee
Q 004752 393 NSLHQSYKQNNANGENFSNVLQEETGVLASCSYEHQTKWGEEVGILYQSV---SEDLFTGFILHCKGWTSTYLTPFRPQF 469 (732)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~c~ye~~t~~g~~~G~~~~sv---tED~~t~~~l~~~Gwrsvy~~~~~~~~ 469 (732)
.+||+++.. .||+++++|+...||+++|++. +..
T Consensus 299 -----------------------------------------iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~~~p~--~~v 335 (570)
T 2d7i_A 299 -----------------------------------------LGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPC--SRV 335 (570)
T ss_dssp -----------------------------------------TTSSCTTCCSSSSHHHHHHHHHHHTTCEEEEEEE--EEE
T ss_pred -----------------------------------------cCCCCCcccccCcchHHHHHHHHhCCCeEEEccC--eEE
Confidence 456876643 6999999999999999999874 322
Q ss_pred E----eccCCC-------hHHHhhhhhccccCcccccccccCcc
Q 004752 470 L----GTSTTN-------LNDLLIQGTRWGSGLTDVGLSRFCPL 502 (732)
Q Consensus 470 ~----g~aP~~-------l~~~~~Qr~RWa~G~~qi~~~~~~pl 502 (732)
. +..|.+ .+...+...||....-+.+.. .+|.
T Consensus 336 ~H~~r~~~~~~~~~~~~~~~n~~r~~~~W~d~~~~~~y~-~~p~ 378 (570)
T 2d7i_A 336 GHIYRKYVPYKVPAGVSLARNLKRVAEVWMDEYAEYIYQ-RRPE 378 (570)
T ss_dssp EECCCSSCCSCCCSSCCHHHHHHHHHHHHCGGGHHHHHT-TCGG
T ss_pred EEEccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHh-cCcc
Confidence 2 123322 345556667898888877764 3453
No 7
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.70 E-value=4.2e-17 Score=185.07 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=93.9
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchHhHHHHHHhhhcchhhhhhcCcccc
Q 004752 91 DDKLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTI 170 (732)
Q Consensus 91 ~~~~P~VdV~I~t~~pynEp~~~v~~Tv~s~~~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r 170 (732)
++.+|.|+|+||+ |||+...+.+||.|++++.||...++|+|+|||++|.|...+
T Consensus 62 ~~~~p~vSVIIp~---yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------------------- 116 (501)
T 2ffu_A 62 RVDLPATSVVITF---HNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------------------- 116 (501)
T ss_dssp CSSCCCEEEEEEE---SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG----------------------
T ss_pred CcCCCCEEEEEEe---CcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHH----------------------
Confidence 4568999999999 999955899999999999999766799999999999663210
Q ss_pred CcccccccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCcchhhhhhhcccCcchhhhhccccCcC
Q 004752 171 CPQAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEQIIQETFGESETIRQADLVEMP 250 (732)
Q Consensus 171 ~p~~yf~~~~~~~~~~~~~~~~e~~~~k~~ye~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~p 250 (732)
+ ...|
T Consensus 117 ------------------------------------------------------------~---------------~~~~ 121 (501)
T 2ffu_A 117 ------------------------------------------------------------L---------------GKIE 121 (501)
T ss_dssp ------------------------------------------------------------G---------------GGBT
T ss_pred ------------------------------------------------------------H---------------hcCC
Confidence 0 0125
Q ss_pred cEEEEecccCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhcC
Q 004752 251 LLVYVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLD 312 (732)
Q Consensus 251 ~l~yv~Rekrp~~~~~~KAGaLN~~l~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D 312 (732)
++.++..++| .++++|+|.|++. ++||||+++|+|..++ |++|.+++..+.+
T Consensus 122 ~v~vi~~~~n-----~G~~~A~N~G~~~----A~gd~i~flD~D~~~~-p~~L~~ll~~~~~ 173 (501)
T 2ffu_A 122 KVRVLRNDRR-----EGLMRSRVRGADA----AQAKVLTFLDSHCECN-EHWLEPLLERVAE 173 (501)
T ss_dssp TEEEEECSSC-----CHHHHHHHHHHHH----CCSSEEEECCSSEEEC-TTCHHHHHHHHHH
T ss_pred CEEEEECCCC-----cCHHHHHHHHHHh----cCCCEEEEECCCcccC-ccHHHHHHHHHHh
Confidence 6888876653 6799999999999 8999999999999987 9999999998864
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.66 E-value=1.4e-16 Score=185.18 Aligned_cols=219 Identities=18% Similarity=0.174 Sum_probs=152.0
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchHhHHHHHHhhhcchhhhhhcCccccCc
Q 004752 93 KLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTICP 172 (732)
Q Consensus 93 ~~P~VdV~I~t~~pynEp~~~v~~Tv~s~~~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~p 172 (732)
..|.|+|+||| |||+ ..+.+||.|+++++||. ++|+|+|||++|.|.+.+.+..
T Consensus 373 ~~~~vsiii~~---yn~~-~~l~~~l~s~~~q~~~~--~eiivvdd~S~d~t~~~~~~~~-------------------- 426 (625)
T 2z86_A 373 RVPLVSIYIPA---YNCS-KYIVRCVESALNQTITD--LEVCICDDGSTDDTLRILQEHY-------------------- 426 (625)
T ss_dssp SSCSEEEEEEE---SSCT-TTHHHHHHHHHSSSCCS--EEEEEEEESCSSSHHHHHHHHH--------------------
T ss_pred cCCeEEEEEeC---CCCH-HHHHHHHHHHHhCcCCC--eEEEEEECcCChhHHHHHHHHH--------------------
Confidence 46899999999 9997 78999999999999985 9999999999998764332210
Q ss_pred ccccccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCcchhhhhhhcccCcchhhhhccccCcCcE
Q 004752 173 QAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEQIIQETFGESETIRQADLVEMPLL 252 (732)
Q Consensus 173 ~~yf~~~~~~~~~~~~~~~~e~~~~k~~ye~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~p~l 252 (732)
...|++
T Consensus 427 --------------------------------------------------------------------------~~~~~i 432 (625)
T 2z86_A 427 --------------------------------------------------------------------------ANHPRV 432 (625)
T ss_dssp --------------------------------------------------------------------------TTCTTE
T ss_pred --------------------------------------------------------------------------hhCCcE
Confidence 012457
Q ss_pred EEEecccCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhc-CCCCCCcEEEEccCcccccC
Q 004752 253 VYVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKISSSLAFVQFPQKFHNI 331 (732)
Q Consensus 253 ~yv~Rekrp~~~~~~KAGaLN~~l~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~-D~~~~~~vg~VQ~Pq~f~n~ 331 (732)
.++. ++ +.++++|+|.|++. ++||||+++|+|.++. |++|.+++..|. +| ++++|.+...+.+.
T Consensus 433 ~~~~-~~-----n~G~~~a~n~g~~~----a~g~~i~~ld~D~~~~-~~~l~~~~~~~~~~~----~~~~v~~~~~~~~~ 497 (625)
T 2z86_A 433 RFIS-QK-----NKGIGSASNTAVRL----CRGFYIGQLDSDDFLE-PDAVELCLDEFRKDL----SLACVYTTNRNIDR 497 (625)
T ss_dssp EEEE-EC-----CCCHHHHHHHHHHH----CCSSEEEECCTTCEEC-TTHHHHHHHHHHHCT----TCSEEEEEEEEECT
T ss_pred EEEe-CC-----CCCHHHHHHHHHHh----cCCCEEEEECCCcccC-hhHHHHHHHHHHhCC----CeeEEEeeeEEECC
Confidence 7775 33 46899999999999 8999999999999987 999999998874 55 36677665544432
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhcCCccceeccEEEechhccccccchhhhhccCCchhhhhhhhhhhcccCCCCCCchh
Q 004752 332 NKYDIYDGRFRSAYCVQWQGMDGLKGPVLSGTGYYIKRESLYADFTHTELKDTFGKSNVLINSLHQSYKQNNANGENFSN 411 (732)
Q Consensus 332 ~~~d~~~~~~~~f~~~~~~g~d~~~~~~~~Gtg~~~RR~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (732)
+.. ....... +. ....+......++|++.++||+++..
T Consensus 498 ~~~-~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~r~~~~~------------------------------------- 535 (625)
T 2z86_A 498 EGN-LISNGYN--WP--IYSREKLTSAMICHHFRMFTARAWNL------------------------------------- 535 (625)
T ss_dssp TSC-EEEECCC--CS--SCCHHHHTTSCCCCSCEEEEHHHHTT-------------------------------------
T ss_pred CCC-EeccCcc--cc--cCCHHHHhhcccCCceEEEEHHHHHH-------------------------------------
Confidence 111 0000000 00 00011123456788899999998852
Q ss_pred hHHHhhccccccceeccccccccccccCC-CccchHHHHHHHHhCCCeEEEeCCCCCeeE---eccCCChHHHhhhhhcc
Q 004752 412 VLQEETGVLASCSYEHQTKWGEEVGILYQ-SVSEDLFTGFILHCKGWTSTYLTPFRPQFL---GTSTTNLNDLLIQGTRW 487 (732)
Q Consensus 412 ~~~~~~~~v~~c~ye~~t~~g~~~G~~~~-svtED~~t~~~l~~~Gwrsvy~~~~~~~~~---g~aP~~l~~~~~Qr~RW 487 (732)
.+||+.. ...||.++.+++..+| ++.|+++ +... .....+......|+.+|
T Consensus 536 ----------------------~ggfd~~~~~~eD~dl~~r~~~~g-~~~~~~~--~~~~~r~h~~~~s~~~~~~~~~~~ 590 (625)
T 2z86_A 536 ----------------------TEGFNESISNAVDYDMYLKLSEVG-PFKHINK--ICYNRVLHGENTSIKKLDIQKENH 590 (625)
T ss_dssp ----------------------TTCCCSSCSSCHHHHHHHHHTTTS-CEEEEEE--EEEEEECC----CCSSHHHHHHHH
T ss_pred ----------------------hCCCCCccCChHHHHHHHHHHHhC-CEEEeCC--cEEEEEECCCccchhhHHHHHHHH
Confidence 4578765 4679999999999999 8999875 4443 23444555666676666
Q ss_pred ccCccc
Q 004752 488 GSGLTD 493 (732)
Q Consensus 488 a~G~~q 493 (732)
.+...+
T Consensus 591 ~~~~~~ 596 (625)
T 2z86_A 591 FKVVNE 596 (625)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554333
No 9
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=99.62 E-value=1.4e-15 Score=163.65 Aligned_cols=122 Identities=15% Similarity=-0.009 Sum_probs=91.6
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchHhHHHHHHhhhcchhhhhhcCccccC
Q 004752 92 DKLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTIC 171 (732)
Q Consensus 92 ~~~P~VdV~I~t~~pynEp~~~v~~Tv~s~~~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~ 171 (732)
...|.|+|+||+ |||+ +.+.++|.|+++++||. ..+|+|+|||++|.|.+.+.+ ++.+
T Consensus 45 ~~~~~vSViIp~---yN~~-~~l~~~l~sl~~q~~~~-~~eiivVDdgS~D~t~~~~~~--------------~~~~--- 102 (329)
T 3ckj_A 45 KAGRTISVVLPA---LDEE-DTIGSVIDSISPLVDGL-VDELIVLDSGSTDDTEIRAVA--------------AGAR--- 102 (329)
T ss_dssp TTTCCEEEEEEE---SSCT-TTHHHHHHHHGGGBTTT-BSEEEEEECSCCSSHHHHHHH--------------TTCE---
T ss_pred ccCCcEEEEEee---CCCH-HHHHHHHHHHHHhhCCC-CcEEEEEeCCCCchHHHHHHH--------------hhhh---
Confidence 446899999999 9998 78999999999999994 589999999999987643221 1000
Q ss_pred cccccccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCcchhhhhhhcccCcchhhhhccccCcCc
Q 004752 172 PQAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEQIIQETFGESETIRQADLVEMPL 251 (732)
Q Consensus 172 p~~yf~~~~~~~~~~~~~~~~e~~~~k~~ye~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~p~ 251 (732)
..+.
T Consensus 103 ----------------------------------------------------------------------------~~~~ 106 (329)
T 3ckj_A 103 ----------------------------------------------------------------------------VVSR 106 (329)
T ss_dssp ----------------------------------------------------------------------------EEEH
T ss_pred ----------------------------------------------------------------------------hccc
Confidence 0000
Q ss_pred EEEEe-cccCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCC-CCchHHHHHHHHhh-cCCCCCCcEEEEccC
Q 004752 252 LVYVS-REKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMY-CNDPTSARQAMCFH-LDPKISSSLAFVQFP 325 (732)
Q Consensus 252 l~yv~-Rekrp~~~~~~KAGaLN~~l~~s~~~s~ge~Il~lDAD~~-~~~p~~L~~~v~~f-~D~~~~~~vg~VQ~P 325 (732)
+.++. .++ +.||++|+|.+++. ++||||+++|+|.+ +. |++|.+++..+ .+|+ +++|++.
T Consensus 107 ~~~~~~~~~-----n~G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~-p~~l~~l~~~l~~~~~----~~~v~g~ 169 (329)
T 3ckj_A 107 EQALPEVPI-----RPGKGEALWRSLAA----SRGDIVVFVDSDLINPH-PMFVPWLVGPLLTGDG----VHLVKSF 169 (329)
T ss_dssp HHHCTTSCC-----CCSHHHHHHHHHHH----CCCSEEEECCTTEESCC-TTHHHHHHHHHHSCSS----CCEEEEE
T ss_pred eeeeccCCC-----CCCHHHHHHHHHHh----CCCCEEEEECCCCCCcC-hHHHHHHHHHHHhCCC----ccEEEEE
Confidence 11121 122 47899999999999 89999999999998 76 99999999875 4553 6666654
No 10
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=99.51 E-value=2.2e-14 Score=167.98 Aligned_cols=116 Identities=17% Similarity=0.100 Sum_probs=87.2
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCe-EEEEEcCCCCccch-HhHHHHHHhhhcchhhhhhcCcccc
Q 004752 93 KLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKL-HVYLSDDGGSPITL-HGMREACRFAKWWLPFCRRYGIKTI 170 (732)
Q Consensus 93 ~~P~VdV~I~t~~pynEp~~~v~~Tv~s~~~~dYP~~kl-~v~v~DDg~~~~T~-~~l~Ea~~fa~~w~pfc~~~~v~~r 170 (732)
.-|+|+|+||| ||++ +.+.++|.|+.+++|+.++. +|+|+|||++|.+- ..+.|..
T Consensus 178 ~~pkVSVVIpt---YN~~-~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~------------------ 235 (657)
T 4fix_A 178 GTANIAVGIPT---FNRP-ADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAA------------------ 235 (657)
T ss_dssp SCCCEEEECCB---SSCH-HHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHH------------------
T ss_pred CCCeEEEEEEe---cCCH-HHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHH------------------
Confidence 35899999999 9998 78999999999999965545 99999999987321 1111110
Q ss_pred CcccccccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCcchhhhhhhcccCcchhhhhccccCcC
Q 004752 171 CPQAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEQIIQETFGESETIRQADLVEMP 250 (732)
Q Consensus 171 ~p~~yf~~~~~~~~~~~~~~~~e~~~~k~~ye~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~p 250 (732)
++ ..|
T Consensus 236 -------------------------------~~--------------------------------------------~~~ 240 (657)
T 4fix_A 236 -------------------------------AR--------------------------------------------LGS 240 (657)
T ss_dssp -------------------------------HH--------------------------------------------HGG
T ss_pred -------------------------------Hh--------------------------------------------cCC
Confidence 00 013
Q ss_pred cEEEEecccCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhcC
Q 004752 251 LLVYVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLD 312 (732)
Q Consensus 251 ~l~yv~Rekrp~~~~~~KAGaLN~~l~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D 312 (732)
++.++..+ +.|.|+|.|.+++..-...++|||+++|+|.++. |++|.+++.++.+
T Consensus 241 ~I~vI~~~------N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~-pd~L~~ll~~l~~ 295 (657)
T 4fix_A 241 RLSIHDQP------NLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLE-PDSILRVLAMHRF 295 (657)
T ss_dssp GEEEEECC------CCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEEC-THHHHHHHHHHHH
T ss_pred CEEEEECC------CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccC-hhHHHHHHHHHHh
Confidence 57788643 3689999999998731001679999999999998 9999999998863
No 11
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=99.50 E-value=1.8e-15 Score=179.55 Aligned_cols=194 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred CceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchHhHHHHHHhhhcchhhhhhcCccccCccc
Q 004752 95 PAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTICPQA 174 (732)
Q Consensus 95 P~VdV~I~t~~pynEp~~~v~~Tv~s~~~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~p~~ 174 (732)
|.|+|+||| ||++ +.+.+||.|+++++||. ++|+|+|||++|.|.+.+.+.++ +
T Consensus 2 p~vSVIIp~---yN~~-~~L~~~L~Sll~Qt~~~--~EIIVVDDgStD~t~~il~~~~~----------~---------- 55 (729)
T 3l7i_A 2 NKLTIIVTY---YNAE-EYITGCLESIKQQRTQD--FNLIIVNDGSTDQSKKLMDEAIK----------D---------- 55 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEc---CCCH-HHHHHHHHHHHhCCCCC--eEEEEEECCCCCcHHHHHHHHHH----------h----------
Confidence 789999999 9998 88999999999999995 89999999999977643322110 0
Q ss_pred ccccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCcchhhhhhhcccCcchhhhhccccCcCcEEE
Q 004752 175 YFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEQIIQETFGESETIRQADLVEMPLLVY 254 (732)
Q Consensus 175 yf~~~~~~~~~~~~~~~~e~~~~k~~ye~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~y 254 (732)
| -+++.+
T Consensus 56 --------------------------~-----------------------------------------------~~~i~~ 62 (729)
T 3l7i_A 56 --------------------------Y-----------------------------------------------DKNIRF 62 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------C-----------------------------------------------CCCEEE
Confidence 0 024567
Q ss_pred EecccCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhcCCCCCCcEEEEccCcccccCCCC
Q 004752 255 VSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKY 334 (732)
Q Consensus 255 v~Rekrp~~~~~~KAGaLN~~l~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D~~~~~~vg~VQ~Pq~f~n~~~~ 334 (732)
+..++ +.|+++|.|.|++. ++||||+++|+|.++. |++|.+++..+.++ ++.+... ..+.+. .
T Consensus 63 i~~~~-----n~G~~~arN~gi~~----A~gdyI~flD~Dd~~~-p~~l~~l~~~l~~~----d~v~~~~-~~~~~~-~- 125 (729)
T 3l7i_A 63 IDLDE-----NSGHAHARNIALEE----VETPYFMFLDADDELA-SYAITFYLEKFNNT----DGLIAPI-HSFTTQ-R- 125 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EECCC-----CCCHHHHHHHHHHh----ccCCEEEEECCCCCCC-hhHHHHHHHHhcCC----CEEEEee-EEeecC-C-
Confidence 76554 46899999999999 8999999999999997 99999999988743 2332222 112111 1
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCc--cceeccEEEechhccccccchhhhhccCCchhhhhhhhhhhcccCCCCCCchhh
Q 004752 335 DIYDGRFRSAYCVQWQGMDGLKGP--VLSGTGYYIKRESLYADFTHTELKDTFGKSNVLINSLHQSYKQNNANGENFSNV 412 (732)
Q Consensus 335 d~~~~~~~~f~~~~~~g~d~~~~~--~~~Gtg~~~RR~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (732)
..+.......... ..+....... ...|.+.++||+++..
T Consensus 126 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~rr~~l~~-------------------------------------- 166 (729)
T 3l7i_A 126 PQFVDLDRVRVEY-FNAKENINSFLRKQSACNIIFRTAIVRA-------------------------------------- 166 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Cccccccceeeee-ecchhhHHHHhhccchhheeeeHHHHHH--------------------------------------
Confidence 1111000000000 0011111111 2356678999998853
Q ss_pred HHHhhccccccceeccccccccc-cccCC-CccchHHHHHHHHhCCCeEEEeCC
Q 004752 413 LQEETGVLASCSYEHQTKWGEEV-GILYQ-SVSEDLFTGFILHCKGWTSTYLTP 464 (732)
Q Consensus 413 ~~~~~~~v~~c~ye~~t~~g~~~-G~~~~-svtED~~t~~~l~~~Gwrsvy~~~ 464 (732)
.+ ||+.+ ...||.+..+++..+|++++|+++
T Consensus 167 ---------------------~gl~fde~~~~~ED~d~~~rl~~~g~~i~~~~~ 199 (729)
T 3l7i_A 167 ---------------------HHIRFNENLNTYVDWSFVLEYMKYVNKFVRIFN 199 (729)
T ss_dssp ------------------------------------------------------
T ss_pred ---------------------cCCCcCCCCCcccCHHHHHHHHHhcCCEEEecC
Confidence 23 67766 478999999999999999999943
No 12
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=99.42 E-value=3.4e-13 Score=142.72 Aligned_cols=62 Identities=10% Similarity=-0.141 Sum_probs=45.7
Q ss_pred cccccCCCc---cchHHHHHHHHhCCCeEEEeCCCCCee----------EeccCCChHHHhhhhhccccCccccc
Q 004752 434 EVGILYQSV---SEDLFTGFILHCKGWTSTYLTPFRPQF----------LGTSTTNLNDLLIQGTRWGSGLTDVG 495 (732)
Q Consensus 434 ~~G~~~~sv---tED~~t~~~l~~~Gwrsvy~~~~~~~~----------~g~aP~~l~~~~~Qr~RWa~G~~qi~ 495 (732)
.+||+.... .||.+++.|++.+||++.+.++..... ....|+.+....+||.||+++.+..+
T Consensus 189 vgGFde~~~g~g~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~ 263 (287)
T 2fy7_A 189 INGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL 263 (287)
T ss_dssp TTSCCSCCSSCSCHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTSSGGGC
T ss_pred cCCCCccccccccchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccC
Confidence 456876543 599999999999999877433211111 23578999999999999999999877
No 13
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=99.39 E-value=2.3e-12 Score=141.91 Aligned_cols=121 Identities=17% Similarity=0.085 Sum_probs=88.4
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHc--CCCCCCCeEEEEEcCCCCccchHhHHHHHHhhhcchhhhhhcCcccc
Q 004752 93 KLPAIDVFICTADPEKEPAIGVMNTVLSAMA--LDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTI 170 (732)
Q Consensus 93 ~~P~VdV~I~t~~pynEp~~~v~~Tv~s~~~--~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r 170 (732)
..|.|+|+||| |||+ +.+.++|.++.+ .+||.+ .+|+|+||||+|.|.+.+.+ ++.+
T Consensus 92 ~~p~vSVVIP~---yNe~-~~l~~~l~sl~~~l~~~~~~-~EIIVVDDgStD~T~~i~~~--------------~~~~-- 150 (387)
T 3f1y_A 92 LGLTVSAVLPS---RNVA-DTVGGIIDEIHALNERAPLI-DQILVVDADSEDGTAGVAAS--------------HGAE-- 150 (387)
T ss_dssp HTCCEEEEEEE---SSCT-TTHHHHHHHHHHHHHHSCCC-SEEEEEECSCSSSHHHHHHH--------------TTCE--
T ss_pred CCCeEEEEEEc---CCCH-HHHHHHHHHHHHHHhcCCCC-eEEEEEcCcCCccHHHHHHH--------------hCch--
Confidence 36899999999 9998 789999999987 477743 79999999999988643221 1100
Q ss_pred CcccccccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCcchhhhhhhcccCcchhhhhccccCcC
Q 004752 171 CPQAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEQIIQETFGESETIRQADLVEMP 250 (732)
Q Consensus 171 ~p~~yf~~~~~~~~~~~~~~~~e~~~~k~~ye~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~p 250 (732)
++. +
T Consensus 151 -----------------------------------------------------------v~~-----------------~ 154 (387)
T 3f1y_A 151 -----------------------------------------------------------VYS-----------------E 154 (387)
T ss_dssp -----------------------------------------------------------EEE-----------------G
T ss_pred -----------------------------------------------------------hcc-----------------c
Confidence 000 0
Q ss_pred cEEEEecccCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCC-CCchHHHHHHHHhhc-CCCCCCcEEEEcc
Q 004752 251 LLVYVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMY-CNDPTSARQAMCFHL-DPKISSSLAFVQF 324 (732)
Q Consensus 251 ~l~yv~Rekrp~~~~~~KAGaLN~~l~~s~~~s~ge~Il~lDAD~~-~~~p~~L~~~v~~f~-D~~~~~~vg~VQ~ 324 (732)
.++++.+++ +.+|++|+|.+++. ++||||+++|||.. +. |++|.+++..+. +|+ +++|.+
T Consensus 155 ~~~~i~~~~-----n~G~g~A~n~G~~~----A~gd~i~~lDaD~~~~~-p~~L~~l~~~l~~~p~----~d~v~G 216 (387)
T 3f1y_A 155 NELMSGYGD-----AHGKGDAMWRALSV----TRGDLVLYIDADTRDFR-PQLAYGVLGPVLEVPG----VRFVKA 216 (387)
T ss_dssp GGTTGGGCS-----CCSHHHHHHHHTTT----CCSSEEEECCTTCSSCC-THHHHTTHHHHHHSTT----CCEEEE
T ss_pred ceeEecCCc-----cCCHHHHHHHHHHh----cCCCEEEEEcCCCCcCC-HHHHHHHHHHHHHCCC----ceEEEE
Confidence 001112222 47899999999999 89999999999999 66 999999998774 444 455544
No 14
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=99.05 E-value=1.3e-09 Score=112.18 Aligned_cols=50 Identities=6% Similarity=-0.077 Sum_probs=39.7
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhcCC-CCCCcEEEE
Q 004752 268 KAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDP-KISSSLAFV 322 (732)
Q Consensus 268 KAGaLN~~l~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D~-~~~~~vg~V 322 (732)
.|+|+|.|++. ++|||++++|+|.+++ |++|.+++.++.+. ..++++|.|
T Consensus 62 ~a~a~N~Gi~~----A~g~yl~fln~D~~~~-~~~l~~l~~~~~~~~~~~~~vg~v 112 (249)
T 2nxv_A 62 GFSWHKQMLPR----CKGRYVIFCHEDVELV-DRGYDDLVAAIEALEEADPKWLVA 112 (249)
T ss_dssp TTTHHHHHGGG----CCSSEEEEEETTEECS-SCCHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHh----cCCCEEEEECCCcccC-ccHHHHHHHHHHhcccCCCCeeEE
Confidence 46789999999 8999999999999996 99999999888630 001247766
No 15
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=98.69 E-value=2.2e-07 Score=102.30 Aligned_cols=42 Identities=19% Similarity=0.044 Sum_probs=36.7
Q ss_pred CCChHHHHHHHH----HhcCCCCCCCEEEEeCCCCC-CCchHHHHHHHHhhc
Q 004752 265 HHFKAGALNVLL----RVSGVISNSPYILGLDCDMY-CNDPTSARQAMCFHL 311 (732)
Q Consensus 265 ~~~KAGaLN~~l----~~s~~~s~ge~Il~lDAD~~-~~~p~~L~~~v~~f~ 311 (732)
+.||++|+|+++ +. ++||+|+++|||.. .+ |+.+.+++....
T Consensus 73 n~GkG~Al~~G~~~Al~~----a~gd~vv~mDADlq~~~-P~~i~~Ll~~l~ 119 (397)
T 2bo4_A 73 RPGKGDGMNTALRYFLEE----TQWERIHFYDADITSFG-PDWITKAEEAAD 119 (397)
T ss_dssp SSSHHHHHHHHHHHHHHH----CCCSEEEECCTTCSSCC-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCC-HHHHHHHHHHHH
Confidence 479999999999 77 89999999999996 45 999999888664
No 16
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=97.98 E-value=2.9e-05 Score=84.78 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHhcCCCC---CCCEEEEeCCCCCCCchHHHHHHHH
Q 004752 266 HFKAGALNVLLRVSGVIS---NSPYILGLDCDMYCNDPTSARQAMC 308 (732)
Q Consensus 266 ~~KAGaLN~~l~~s~~~s---~ge~Il~lDAD~~~~~p~~L~~~v~ 308 (732)
+||..||-+++.. + +||+|+++|||-+ .|..+.+.+.
T Consensus 143 ~GKG~Am~aGl~~----A~~~~gd~Vv~~DaDl~--iP~~v~~~~k 182 (394)
T 2zu9_A 143 SGKGEGMLVGLLL----AKAIGAEYVGFVDADNY--IPGAVNEYVK 182 (394)
T ss_dssp CSHHHHHHHHHHH----HHHTTCSEEEECCSCBS--CHHHHHHHHH
T ss_pred CChHHHHHHHHHH----HhhCCCCEEEEEeCCCC--CHHHHHHHHH
Confidence 5999999999998 7 8999999999995 3888866553
No 17
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=97.95 E-value=4.3e-05 Score=81.83 Aligned_cols=44 Identities=7% Similarity=-0.016 Sum_probs=37.3
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccch
Q 004752 93 KLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITL 145 (732)
Q Consensus 93 ~~P~VdV~I~t~~pynEp~~~v~~Tv~s~~~~dYP~~kl~v~v~DDg~~~~T~ 145 (732)
....++|+||+ |||+. .++.+++++.+.. .+|+|+|||+.|.|.
T Consensus 51 i~~klSIVVPv---YNEe~----~lLesVl~qi~~d--~eIIlVdDGS~D~s~ 94 (391)
T 2wvl_A 51 VLEQTAIVVPT---RNERL----KLLEGVLSGIPHE--ALILVASNSSPDRFQ 94 (391)
T ss_dssp HHTTEEEEEEE---SSCCH----HHHHHHHHTSCTT--SEEEEEECCCHHHHH
T ss_pred HHhceEEEEec---cCcHH----HHHHHHHhcCCCC--ceEEEEECCCCCChH
Confidence 35789999999 99994 3688999998764 899999999988663
No 18
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=97.73 E-value=4.9e-05 Score=81.99 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=40.1
Q ss_pred CCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccc
Q 004752 94 LPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPIT 144 (732)
Q Consensus 94 ~P~VdV~I~t~~pynEp~~~v~~Tv~s~~~~dYP~~kl~v~v~DDg~~~~T 144 (732)
++.+.|+|+| ||-| + +++++.|+++++.+.++..|+|+|||+.+.|
T Consensus 1 ~~~~pViI~~---yNRp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~ 46 (343)
T 1fo8_A 1 LAVIPILVIA---CDRS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHEET 46 (343)
T ss_dssp CCCCCEEEEE---SSCT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHH
T ss_pred CCcccEEEEE---CCcH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHH
Confidence 3567899999 9998 7 9999999999997777889999999997643
No 19
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=87.72 E-value=2.6 Score=43.75 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=27.6
Q ss_pred CCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCc
Q 004752 265 HHFKAGALNVLLRVSGVISNSPYILGLDCDMYCND 299 (732)
Q Consensus 265 ~~~KAGaLN~~l~~s~~~s~ge~Il~lDAD~~~~~ 299 (732)
.-.||..||.+...+. .+.|++++=|.|.+|.|
T Consensus 96 ~FNRa~LlNvGf~ea~--~~~d~~ifHDVDLlP~d 128 (287)
T 3lw6_A 96 RFNRASLINVGFQFAS--DVYDYIAMHDVDLLPLN 128 (287)
T ss_dssp CCCHHHHHHHHHHHSC--TTCCEEEEECTTEEECC
T ss_pred ccchhheecccHHHHh--ccCCEEEEecccccccC
Confidence 4669999999998842 45799999999999885
No 20
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=37.81 E-value=52 Score=32.56 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhcC
Q 004752 268 KAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLD 312 (732)
Q Consensus 268 KAGaLN~~l~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D 312 (732)
....+-++++......+.++|++.|||+=.-+|+.+++++..+.+
T Consensus 83 r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~ 127 (231)
T 3q80_A 83 RTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD 127 (231)
T ss_dssp HHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence 356677777763200125899999999765569999999887754
No 21
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=36.45 E-value=46 Score=34.12 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=25.0
Q ss_pred CCCCEEEEeCCCCCCCchHHHHHHHHhhcCCC
Q 004752 283 SNSPYILGLDCDMYCNDPTSARQAMCFHLDPK 314 (732)
Q Consensus 283 s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D~~ 314 (732)
.+.++++..|.|++++ .+-|.+.+..+ ||+
T Consensus 92 ~~~~Wf~~~DDDtyv~-~~nL~~~L~~~-d~~ 121 (280)
T 2j0a_A 92 SGLRWFCHVDDDNYVN-PKALLQLLKTF-PQD 121 (280)
T ss_dssp HTCSEEEEEETTEEEC-HHHHHHHHTTS-CTT
T ss_pred CCCcEEEEeCCCcEEc-HHHHHHHHHhC-CCC
Confidence 4899999999999997 88888888655 554
No 22
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=33.83 E-value=73 Score=30.21 Aligned_cols=41 Identities=15% Similarity=0.087 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHhcCCCCCCCEEEEeCCCC-CCCchHHHHHHHHhh
Q 004752 266 HFKAGALNVLLRVSGVISNSPYILGLDCDM-YCNDPTSARQAMCFH 310 (732)
Q Consensus 266 ~~KAGaLN~~l~~s~~~s~ge~Il~lDAD~-~~~~p~~L~~~v~~f 310 (732)
.+-++++..+++.. .+.+.+++++||+ .++ ++.+++++..+
T Consensus 71 ~G~~~si~~al~~~---~~~~~vlv~~~D~P~i~-~~~i~~l~~~~ 112 (197)
T 3d5n_A 71 EGISTSLKLGLRFF---KDYDAVLVALGDMPFVT-KEDVNKIINTF 112 (197)
T ss_dssp GCHHHHHHHHHHHT---TTSSEEEEEETTCCCSC-HHHHHHHHHTC
T ss_pred CCHHHHHHHHHHhh---ccCCcEEEEeCCccccC-HHHHHHHHHHh
Confidence 35688888898872 2348999999999 445 89999888766
No 23
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=20.31 E-value=1.1e+02 Score=29.43 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHhcCCCCCCCEEEEeCCCC-CCCchHHHHHHHHhhcC
Q 004752 266 HFKAGALNVLLRVSGVISNSPYILGLDCDM-YCNDPTSARQAMCFHLD 312 (732)
Q Consensus 266 ~~KAGaLN~~l~~s~~~s~ge~Il~lDAD~-~~~~p~~L~~~v~~f~D 312 (732)
.+.++.++ +++. .+.|.+++++||+ ..+ |+.+++++..+.+
T Consensus 72 ~g~~~~~~-~~~~----~~~~~vlv~~~D~P~~~-~~~i~~l~~~~~~ 113 (234)
T 2y6p_A 72 SGSDRVLY-VVRD----LDVDLIINYQGDEPFVY-EEDIKLIFRELEK 113 (234)
T ss_dssp SHHHHHHH-HHTT----CCCSEEEECCTTCCCCC-HHHHHHHHHHHHH
T ss_pred cchHHHHH-HHHh----CCCCEEEEecCCcCcCC-HHHHHHHHHHHHh
Confidence 56777774 5555 4678999999999 665 8999999887753
Done!