BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004753
(732 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
pdb|2VSN|B Chain B, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
Length = 568
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 153/355 (43%), Gaps = 16/355 (4%)
Query: 298 PLVIGYVSPDYFTHSVSYFIEAPL-VYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGG 356
PL +G+VS + H A Q T+R R + +
Sbjct: 205 PLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTR---LAQAS 261
Query: 357 IWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL 416
D+ + A +R ID+L +L G + + A +PAPVQV W+ YP T+G
Sbjct: 262 TLHDVTALGHLATAKHIRHHGIDLLFDLAGWGGGGRPEVFALRPAPVQVNWLAYPGTSGA 321
Query: 417 PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTN-GF----I 471
P +DY + D+ A PP + + E ++RL F PS + V P+ T G +
Sbjct: 322 PWMDYVLGDAFALPPALEPFYSEHVLRLQGAF---QPSDTSRVVAEPPSRTQCGLPEQGV 378
Query: 472 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 531
FNN K+ P+ + +L VP+S L + P D+ R + G+++ R
Sbjct: 379 VLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA---RLRAFAHAQGVDAQR 435
Query: 532 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 591
+ +P L + ++ Y D+ LDT PY TT ++L+ G P +T G A V S
Sbjct: 436 LVFMP-KLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGS 494
Query: 592 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFA 646
L +GL + ++ +V A+ LASD AL L + L S V FA
Sbjct: 495 LNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFA 549
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/415 (24%), Positives = 175/415 (42%), Gaps = 79/415 (19%)
Query: 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 136
A +L +L + +G+I + V Y+KAL +A A NL + K A++ Y+
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 137 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXX 196
A +P A+A +N+G K+ ++ A++CY A+ I
Sbjct: 69 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---------------------- 106
Query: 197 XXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA------- 249
NP +A+A++NL +++D+G+I AI +Y LK+ PD +A
Sbjct: 107 ------------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
Query: 250 -------------------------GQNRLLAMNY-------INEGHDDKLFEAHRDWGK 277
+NRL +++ ++ G + E H +
Sbjct: 155 LQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCL 214
Query: 278 RFMRLYSQ--YTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXX 335
+ + + Y + K + L +GYVS D+ H S+ +++ H+ +
Sbjct: 215 DKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYA 274
Query: 336 XXXXXXXXTIRFREKVMKKGGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLG 394
FR KVM + + D+ I K A + +D I ILV + G+T +
Sbjct: 275 LSPDDGT---NFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNE 331
Query: 395 MMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFL 449
+ A +PAP+Q W+GYP T+G +DY ITD P E +++ E+L +P F
Sbjct: 332 LFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFF 386
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 98/196 (50%), Gaps = 4/196 (2%)
Query: 471 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL 530
I + +FN L KI P LQ+WA IL VPNS L + P + ++ + +GL
Sbjct: 524 IVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYA---QNMGLPQN 580
Query: 531 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 590
R+ P + +H++ L D+ LDT G TT + L+ G P VTM G A V
Sbjct: 581 RIIFSP-VAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAA 639
Query: 591 SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 650
S LT +G LIAKN EY +A++L +D+ L +R + SP+ + + + + LE
Sbjct: 640 SQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELE 699
Query: 651 STYRNMWHRYCKGDVP 666
Y MW Y G+ P
Sbjct: 700 RLYLQMWEHYAAGNKP 715
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Query: 33 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 92
P +A++ N+ I + +G++E A+ Y + L V P F A +N+A L + +G
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL-------QQQGK 58
Query: 93 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 152
+ + + +YK+A+ + +ADA N+G EM A+ Y A NP A+A +NL
Sbjct: 59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118
Query: 153 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 186
I+KD N+ +A+ Y+ AL +KP+F + NL
Sbjct: 119 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%)
Query: 142 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXX 201
P A++ NNL I +++ N+++AV Y+ AL + P F+ + +NL V QG
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 202 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 252
+PT+A+AY+N+G ++ + A+ Y + ++I+P +A N
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 63
A+ NL V + + AL Y++A P +A+AY NMG K D++ A+ CY R +
Sbjct: 45 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI 104
Query: 64 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG----- 118
++P F A +N+A D G+I + +A Y+ AL + DA NL
Sbjct: 105 QINPAFADAHSNLASIHKD-------SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI 157
Query: 119 ----VAYGEMLKFDMAIVFYEL 136
Y E +K ++IV +L
Sbjct: 158 VCDWTDYDERMKKLVSIVADQL 179
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 7/146 (4%)
Query: 7 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 66
NL + E + A+ Y KA P +A A+ N+ + + +G L+ A+ Y+ + +S
Sbjct: 14 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73
Query: 67 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 126
P F A +NM G +K D+ + Y +A+ N +ADA NL + +
Sbjct: 74 PTFADAYSNM-------GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126
Query: 127 FDMAIVFYELAFHFNPHCAEACNNLG 152
AI Y A P +A NL
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLA 152
>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2VSY|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2JLB|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2JLB|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2XGM|A Chain A, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGM|B Chain B, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGO|A Chain A, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGO|B Chain B, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGS|A Chain A, Xcogt In Complex With C-Udp
pdb|2XGS|B Chain B, Xcogt In Complex With C-Udp
Length = 568
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 153/355 (43%), Gaps = 16/355 (4%)
Query: 298 PLVIGYVSPDYFTHSVSYFIEAPL-VYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGG 356
PL +G+VS + H A Q T+R R + +
Sbjct: 205 PLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTR---LAQAS 261
Query: 357 IWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL 416
D+ + A +R ID+L +L G + + A +PAPVQV W+ YP T+G
Sbjct: 262 TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGA 321
Query: 417 PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTN-GF----I 471
P +DY + D+ A PP + + E ++RL F PS + V P+ T G +
Sbjct: 322 PWMDYVLGDAFALPPALEPFYSEHVLRLQGAF---QPSDTSRVVAEPPSRTQCGLPEQGV 378
Query: 472 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 531
FNN K+ P+ + +L VP+S L + P D+ R + G+++ R
Sbjct: 379 VLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA---RLRAFAHAQGVDAQR 435
Query: 532 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 591
+ +P L + ++ Y D+ LDT PY TT ++L+ G P +T G A V S
Sbjct: 436 LVFMP-KLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGS 494
Query: 592 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFA 646
L +GL + ++ +V A+ LASD AL L + L S V FA
Sbjct: 495 LNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFA 549
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 111/244 (45%), Gaps = 7/244 (2%)
Query: 1 MQPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 60
+ AY NLG VY E Q A+ Y A +P + + Y N+ GD+E A+ Y
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 61 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 120
L +P+ + +DLG +K G + + A Y KA+ ++A A NLG
Sbjct: 126 SALQYNPDLYCVR-------SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 121 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 180
+ + +AI +E A +P+ +A NLG + K+ D+AV Y ALS+ PN +
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238
Query: 181 SLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 240
NL VY QG P + +AY NL ++ GS++ A D Y L
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 241 KIDP 244
++ P
Sbjct: 299 RLCP 302
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 118/246 (47%), Gaps = 7/246 (2%)
Query: 7 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 66
+LG + L + + A CY KA +P +A A+ N+G ++ +G++ AI +E+ + +
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Query: 67 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 126
PNF A +LG +K ++ VA Y +AL + ++A NL Y E
Sbjct: 200 PNF-------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252
Query: 127 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 186
D+AI Y A PH +A NL K++ ++ +A +CY AL + P + SLNNL
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312
Query: 187 VVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 246
+ QG P +A A++NL + + G + A+ Y++ ++I P
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372
Query: 247 RNAGQN 252
+A N
Sbjct: 373 ADAYSN 378
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 7/217 (3%)
Query: 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 63
A+ NLG V++ + A+ +EKA P + +AY N+G + K + A+A Y R L
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230
Query: 64 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 123
++SPN + N+A + +G I+ + Y++A+ H+ DA NL A E
Sbjct: 231 SLSPNHAVVHGNLACVYYE-------QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283
Query: 124 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 183
A Y A P A++ NNL I +++ N+++AV Y+ AL + P F+ + +
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343
Query: 184 NLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 220
NL V QG +PT+A+AY+N+G
Sbjct: 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 2/198 (1%)
Query: 76 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 135
+A A ++LG K G + + + +Y+ AL + D NL A + A+ Y
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 136 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXX 195
A +NP ++LG + K L++A CY A+ +PNF+ + +NLG V+ QG
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 196 XXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 255
+P + +AY NLG + ++A A+ AY + L + P+ N L
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN--L 243
Query: 256 AMNYINEGHDDKLFEAHR 273
A Y +G D + +R
Sbjct: 244 ACVYYEQGLIDLAIDTYR 261
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 7 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 66
NL VY E D A+ Y +A +P + +AYCN+ K +G + A CY L +
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 67 PNFEIAKNNMAIALTDLGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 125
P + NN+A +K E G+I + V Y+KAL +A A NL +
Sbjct: 302 PTHADSLNNLA--------NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353
Query: 126 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 157
K A++ Y+ A +P A+A +N+G K+
Sbjct: 354 KLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 1 MQP----AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 56
+QP AY NL E A CY A P +A++ N+ I + +G++E A+
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 57 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 116
Y + L V P F A +N+A L +G + + + +YK+A+ + +ADA N
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQ-------QGKLQEALMHYKEAIRISPTFADAYSN 378
Query: 117 LGVAYGEM 124
+G EM
Sbjct: 379 MGNTLKEM 386
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 7/141 (4%)
Query: 36 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 95
AEA+ N+G Y +GD + AI Y++ L + P A A +LG +GD ++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------SAEAWYNLGNAYYKQGDYDE 53
Query: 96 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 155
+ YY+KAL + A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 156 KDRDNLDKAVECYQMALSIKP 176
+ + D+A+E YQ AL + P
Sbjct: 114 YKQGDYDEAIEYYQKALELDP 134
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 72/136 (52%)
Query: 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 170
A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y + + D+A+E YQ
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 171 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 230
AL + P +++ NLG Y QG +P AEA+ NLG Y G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 231 LAIDAYEQCLKIDPDS 246
AI+ Y++ L++DP S
Sbjct: 121 EAIEYYQKALELDPRS 136
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 67/117 (57%)
Query: 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 136
A A +LG +GD ++ + YY+KAL + A+A YNLG AY + +D AI +Y+
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 137 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 193
A +P AEA NLG Y + + D+A+E YQ AL + P +++ NLG Y QG
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 7/141 (4%)
Query: 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 63
A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + AI Y++ L
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 64 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 123
+ P A A +LG +GD ++ + YY+KAL + A+A YNLG AY +
Sbjct: 63 ELDP-------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 115
Query: 124 MLKFDMAIVFYELAFHFNPHC 144
+D AI +Y+ A +P
Sbjct: 116 QGDYDEAIEYYQKALELDPRS 136
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 145 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXX 204
AEA NLG Y + + D+A+E YQ AL + P +++ NLG Y QG
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 205 XXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 264
+P AEA+ NLG Y G AI+ Y++ L++DP S A N L Y +G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN--LGNAYYKQGD 118
Query: 265 DDKLFEAHR 273
D+ E ++
Sbjct: 119 YDEAIEYYQ 127
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 70/119 (58%)
Query: 75 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 134
N A A +LG +GD ++ + YY+KAL + + A+A YNLG AY + +D AI +Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 135 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 193
+ A +P+ AEA NLG Y + + D+A+E YQ AL + PN +++ NLG QG
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 7/117 (5%)
Query: 36 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 95
AEA+ N+G Y +GD + AI Y++ L + P N A A +LG +GD ++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAEAWYNLGNAYYKQGDYDE 61
Query: 96 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 152
+ YY+KAL + + A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG
Sbjct: 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 59/110 (53%)
Query: 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 170
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 171 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 220
AL + PN +++ NLG Y QG +P AEA NLG
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%)
Query: 143 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXX 202
+ AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 203 XXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 252
+P AEA+ NLG Y G AI+ Y++ L++DP++ A QN
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 63
A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + AI Y++ L
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 64 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 120
+ P N A A +LG +GD ++ + YY+KAL + + A+A NLG A
Sbjct: 71 ELDP-------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 50
A+YNLG Y + YD A+ Y+KA P AEA N+G + +G
Sbjct: 79 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 68/119 (57%)
Query: 75 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 134
N A A +LG +GD ++ + YY+KAL + A+A YNLG AY + +D AI +Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 135 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 193
+ A P+ AEA NLG Y + + D+A+E YQ AL + PN +++ NLG QG
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 36 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 95
AEA+ N+G Y +GD + AI Y++ L + P N A A +LG +GD ++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYP-------NNAEAWYNLGNAYYKQGDYDE 61
Query: 96 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 152
+ YY+KAL + A+A YNLG AY + +D AI +Y+ A P+ AEA NLG
Sbjct: 62 AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLG 118
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 34/142 (23%)
Query: 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 170
A+A YNLG AY + +D AI +Y+ A P+ AEA NLG Y + + D+A+E YQ
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 171 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 230
AL + PN AEA+ NLG Y G
Sbjct: 69 ALELYPNN----------------------------------AEAWYNLGNAYYKQGDYD 94
Query: 231 LAIDAYEQCLKIDPDSRNAGQN 252
AI+ Y++ L++ P++ A QN
Sbjct: 95 EAIEYYQKALELYPNNAEAKQN 116
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 63
A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + AI Y++ L
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 64 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 104
+ P N A A +LG +GD ++ + YY+KAL
Sbjct: 71 ELYP-------NNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 63
A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + AI Y++ L
Sbjct: 45 AWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Query: 64 AVSPNFEIAKNNMAIALTDLG 84
+ PN AK N+ A G
Sbjct: 105 ELYPNNAEAKQNLGNAKQKQG 125
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%)
Query: 75 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 134
N A A +LG +GD + + YY+KAL + + A A YNLG AY + + AI +Y
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 135 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 193
+ A +P+ A+A G Y + + KA+E YQ AL + PN +++ NLG QG
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 36 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 95
AEA+ N+G Y +GD + AI Y++ L + P N A A +LG +GD +
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDP-------NNASAWYNLGNAYYKQGDYQK 61
Query: 96 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 152
+ YY+KAL + + A A Y G AY + + AI Y+ A +P+ A+A NLG
Sbjct: 62 AIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLG 118
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%)
Query: 143 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXX 202
+ AEA NLG Y + + KA+E YQ AL + PN + + NLG Y QG
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 203 XXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 252
+P A+A+ G Y G AI+ Y++ L++DP++ A QN
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQN 116
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%)
Query: 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 170
A+A NLG AY + + AI +Y+ A +P+ A A NLG Y + + KA+E YQ
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 171 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 220
AL + PN +++ G Y QG +P A+A NLG
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLG 118
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 63
A+ NLG Y + Y A+ Y+KA P A A+ N+G Y +GD + AI Y++ L
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 64 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 120
+ P N A A G +GD + + Y+KAL + + A A NLG A
Sbjct: 71 ELDP-------NNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNA 120
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%)
Query: 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 63
A+YNLG Y + Y A+ Y+KA P A+A+ G Y +GD + AI Y++ L
Sbjct: 45 AWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKAL 104
Query: 64 AVSPNFEIAKNNMAIALTDLG 84
+ PN AK N+ A G
Sbjct: 105 ELDPNNAKAKQNLGNAKQKQG 125
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 170
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 171 ALSIKPNFSQSLNNLGVVYTVQG 193
AL + PN +++ NLG QG
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 75 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 134
N A A +LG +GD ++ + YY+KAL + + A+A YNLG AY + +D AI +Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 135 ELAFHFNPHCAEACNNLG 152
+ A +P+ AEA NLG
Sbjct: 67 QKALELDPNNAEAKQNLG 84
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 63
A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + AI Y++ L
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 64 AVSPNFEIAKNNMAIALTDLG 84
+ PN AK N+ A G
Sbjct: 71 ELDPNNAEAKQNLGNAKQKQG 91
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 36 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 95
AEA+ N+G Y +GD + AI Y++ L + P N A A +LG +GD ++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAEAWYNLGNAYYKQGDYDE 61
Query: 96 GVAYYKKALYYNWHYADAMYNLGVA 120
+ YY+KAL + + A+A NLG A
Sbjct: 62 AIEYYQKALELDPNNAEAKQNLGNA 86
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%)
Query: 143 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXX 202
+ AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 203 XXXXXXNPTYAEAYNNLG 220
+P AEA NLG
Sbjct: 67 QKALELDPNNAEAKQNLG 84
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 39 YCNMGVIYKNRGDLESAIACYERCLAVSPN-----FEIAKNNMAIALTDLGTKVKLEGDI 93
Y ++G + +GD + AI Y++ L PN ++ K M I L
Sbjct: 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLP------------ 55
Query: 94 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 153
N + KK + + A+A Y LG A + + AI + A N A+A LG+
Sbjct: 56 NDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGL 115
Query: 154 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 193
+Y DKA+E Y+ +SIKP F ++ ++G+ Y +G
Sbjct: 116 VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 63
AYY LG + + A+ ++A +YA+AY +G++Y + G+ + AI YE+ +
Sbjct: 75 AYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI 134
Query: 64 AVSPNFEIAKNNMAIALTDLGTK 86
++ P F A ++ +A G +
Sbjct: 135 SIKPGFIRAYQSIGLAYEGKGLR 157
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 2/141 (1%)
Query: 127 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 186
FD AI Y+ +P+ E LG Y D + A+E + + + +++ LG
Sbjct: 21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG 80
Query: 187 VVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 246
+ N YA+AY LG++Y G AI+AYE+ + I P
Sbjct: 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140
Query: 247 RNAGQNRLLAMNYINEGHDDK 267
A Q+ + + Y +G D+
Sbjct: 141 IRAYQS--IGLAYEGKGLRDE 159
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 170
A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y + + D+A+E YQ
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 171 ALSIKP 176
AL + P
Sbjct: 63 ALELDP 68
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 63
A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + AI Y++ L
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
Query: 64 AVSP 67
+ P
Sbjct: 65 ELDP 68
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 136
A A +LG +GD ++ + YY+KAL + A+A YNLG AY + +D AI +Y+
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 137 AFHFNPHC 144
A +P
Sbjct: 63 ALELDPRS 70
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 36 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 95
AEA+ N+G Y +GD + AI Y++ L + P A A +LG +GD ++
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------RSAEAWYNLGNAYYKQGDYDE 55
Query: 96 GVAYYKKAL 104
+ YY+KAL
Sbjct: 56 AIEYYQKAL 64
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 144 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 193
AEA NLG Y + + D+A+E YQ AL + P +++ NLG Y QG
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 51
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 213 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 272
AEA+ NLG Y G AI+ Y++ L++DP S A N L Y +G D+ E +
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN--LGNAYYKQGDYDEAIEYY 60
Query: 273 R 273
+
Sbjct: 61 Q 61
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 80/201 (39%), Gaps = 39/201 (19%)
Query: 26 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG- 84
E A L+ P AEA+ +G+ + ++AI +RCL + PN A +A++ T+
Sbjct: 89 EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148
Query: 85 -----------------------------------TKVKLEGDINQGVA-YYKKALYYNW 108
+K ++ + +GV Y +A + N
Sbjct: 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG 208
Query: 109 HYADA--MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 166
D LGV + +F+ AI + A P N LG + D ++AVE
Sbjct: 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268
Query: 167 CYQMALSIKPNFSQSLNNLGV 187
Y AL I+P F +S NLG+
Sbjct: 269 AYTRALEIQPGFIRSRYNLGI 289
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 8 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 67
LGV++ +++ A+ + A RP + +G N E A+ Y R L + P
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278
Query: 68 NFEIAKNNMAIALTDLGT 85
F ++ N+ I+ +LG
Sbjct: 279 GFIRSRYNLGISCINLGA 296
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 97 VAYYKKALYYNWHYADAMYNLGVAYGEMLK------FDMAIVFYELAFHFNPHCAEACNN 150
V+ +K Y+ H + + A+ E LK + I+F E A +P AEA
Sbjct: 47 VSASEKGYYF--HTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQF 104
Query: 151 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 190
LG+ + +N A+ Q L ++PN ++L L V YT
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 209 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 268
+P AEA+ LG+ + + AI A ++CL++ P++ A LA++Y N H
Sbjct: 95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM--ALAVSYTNTSHQQDA 152
Query: 269 FEAHRDWGKR 278
EA ++W K+
Sbjct: 153 CEALKNWIKQ 162
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 84 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 143
G K EGD+ + + + A+ + A+A LG+ E AIV + P+
Sbjct: 72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131
Query: 144 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXX 203
+A L V Y + + A E + + P + + N +
Sbjct: 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191
Query: 204 XXXXXNPTYAEAYNN------------LGVLYRDAGSISLAIDAYEQCLKIDPD 245
Y EA + LGVL+ +G + AIDA+ L + P+
Sbjct: 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE 245
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 90/242 (37%), Gaps = 28/242 (11%)
Query: 25 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 84
+E A + P + EA+ +G AI+ RCL + P+ + A +A++ T+
Sbjct: 24 FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN-- 81
Query: 85 TKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEMLKFD 128
E Q + L Y YA + LG + L +
Sbjct: 82 -----ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 136
Query: 129 MAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 185
+ +F A +P + C LGV++ DKAV+C+ ALS++PN N L
Sbjct: 137 VKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 194
Query: 186 GVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245
G P Y + NLG+ + G+ A++ + + L +
Sbjct: 195 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 254
Query: 246 SR 247
SR
Sbjct: 255 SR 256
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 8 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 67
LGV+++ +YD A+ C+ A RP + +G N E A+A Y R L + P
Sbjct: 160 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 219
Query: 68 NFEIAKNNMAIALTDLGT 85
+ ++ N+ I+ +LG
Sbjct: 220 GYIRSRYNLGISCINLGA 237
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 209 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 268
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 31 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 88
Query: 269 FEAHRDW 275
E RDW
Sbjct: 89 CEILRDW 95
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 28/246 (11%)
Query: 21 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 80
A+ +E A + P + EA+ +G AI+ RCL + P+ + A +A++
Sbjct: 34 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 93
Query: 81 TDLGTKVKLEGDINQGVAYYKKALYYNWHYAD----------------AMYNLGVAYGEM 124
T+ E Q + L Y YA + LG +
Sbjct: 94 TN-------ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 146
Query: 125 LKFDMAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 181
L ++ +F A +P + C LGV++ DKAV+C+ ALS++PN
Sbjct: 147 LFLEVKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 204
Query: 182 LNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241
N LG P Y + NLG+ + G+ A++ + + L
Sbjct: 205 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 264
Query: 242 IDPDSR 247
+ SR
Sbjct: 265 MQRKSR 270
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 8 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 67
LGV+++ +YD A+ C+ A RP + +G N E A+A Y R L + P
Sbjct: 174 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 233
Query: 68 NFEIAKNNMAIALTDLGT 85
+ ++ N+ I+ +LG
Sbjct: 234 GYIRSRYNLGISCINLGA 251
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 209 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 268
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 45 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 102
Query: 269 FEAHRDW 275
E RDW
Sbjct: 103 CEILRDW 109
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 28/246 (11%)
Query: 21 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 80
A+ +E A + P + EA+ +G AI+ RCL + P+ + A +A++
Sbjct: 43 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 102
Query: 81 TDLGTKVKLEGDINQGVAYYKKALYYNWHYAD----------------AMYNLGVAYGEM 124
T+ E Q + L Y YA + LG +
Sbjct: 103 TN-------ESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 155
Query: 125 LKFDMAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 181
L ++ +F A +P + C LGV++ DKAV+C+ ALS++PN
Sbjct: 156 LFLEVKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 213
Query: 182 LNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241
N LG P Y + NLG+ + G+ A++ + + L
Sbjct: 214 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 273
Query: 242 IDPDSR 247
+ SR
Sbjct: 274 MQRKSR 279
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 8 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 67
LGV+++ +YD A+ C+ A RP + +G N E A+A Y R L + P
Sbjct: 183 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 242
Query: 68 NFEIAKNNMAIALTDLGT 85
+ ++ N+ I+ +LG
Sbjct: 243 GYIRSRYNLGISCINLGA 260
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 209 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 268
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 54 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 111
Query: 269 FEAHRDW 275
E RDW
Sbjct: 112 CETLRDW 118
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 90/242 (37%), Gaps = 28/242 (11%)
Query: 25 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 84
+E A + P + EA+ +G AI+ RCL + P+ + A +A++ T+
Sbjct: 47 FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN-- 104
Query: 85 TKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEMLKFD 128
E Q + L Y YA + LG + L +
Sbjct: 105 -----ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 159
Query: 129 MAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 185
+ +F A +P + C LGV++ DKAV+C+ ALS++PN N L
Sbjct: 160 VKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 217
Query: 186 GVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245
G P Y + NLG+ + G+ A++ + + L +
Sbjct: 218 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 277
Query: 246 SR 247
SR
Sbjct: 278 SR 279
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 8 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 67
LGV+++ +YD A+ C+ A RP + +G N E A+A Y R L + P
Sbjct: 183 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 242
Query: 68 NFEIAKNNMAIALTDLGT 85
+ ++ N+ I+ +LG
Sbjct: 243 GYIRSRYNLGISCINLGA 260
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 209 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 268
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 54 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 111
Query: 269 FEAHRDW 275
E RDW
Sbjct: 112 CEILRDW 118
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 28/246 (11%)
Query: 21 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 80
A+ +E A + P + EA+ +G AI+ RCL + P+ + A +A++
Sbjct: 83 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 142
Query: 81 TDLGTKVKLEGDINQGVAYYKKALYYNWHYAD----------------AMYNLGVAYGEM 124
T+ E Q + L Y YA + LG +
Sbjct: 143 TN-------ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195
Query: 125 LKFDMAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 181
L ++ +F A +P + C LGV++ DKAV+C+ ALS++PN
Sbjct: 196 LFLEVKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
Query: 182 LNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241
N LG P Y + NLG+ + G+ A++ + + L
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313
Query: 242 IDPDSR 247
+ SR
Sbjct: 314 MQRKSR 319
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 8 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 67
LGV+++ +YD A+ C+ A RP + +G N E A+A Y R L + P
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282
Query: 68 NFEIAKNNMAIALTDLGT 85
+ ++ N+ I+ +LG
Sbjct: 283 GYIRSRYNLGISCINLGA 300
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 209 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 268
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 151
Query: 269 FEAHRDW 275
E RDW
Sbjct: 152 CEILRDW 158
>pdb|3Q3E|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3E|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3H|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3H|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3I|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
pdb|3Q3I|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
Length = 631
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 107/262 (40%), Gaps = 31/262 (11%)
Query: 401 APVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPV 460
AP+Q +G+P TT I+Y I + D +++ E L+RLP+ L Y PS A
Sbjct: 373 APIQAIALGHPATTHSDFIEYVIVED--DYVGSEECFSETLLRLPKDALPYVPSALAPEK 430
Query: 461 CPTPALTN-GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC----DSVR 515
N + G + K+ P L+ I R VK + +
Sbjct: 431 VDYLLRENPEVVNIGIASTTMKLNPYFLEALKAI-----RDRAKVKVHFHFALGQSNGIT 485
Query: 516 H----RFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLY 571
H RF+ + LG + P H +++ D+ ++ FP+ T + +
Sbjct: 486 HPYVERFIKSY--LGDSATAHPHSPY----HQYLRILHNCDMMVNPFPFGNTNGIIDMVT 539
Query: 572 MGVPCVTMAGS-VHAHNVGVSLLTKVGLKH-LIAKNEDEYVQLALQLASDVTALANLRM- 628
+G+ V G+ VH H + L ++GL LIA DEYV+ A++LA + LR
Sbjct: 540 LGLVGVCKTGAEVHEH-IDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRY 598
Query: 629 -----SLRDLMSKSPVCDGQNF 645
L L + P GQ F
Sbjct: 599 IIENNGLNTLFTGDPRPMGQVF 620
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 28 AALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 86
AALE P A+ + ++GV+Y + +SA A R + + P+ N + L + G +
Sbjct: 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNR 221
Query: 87 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 130
+ + + Y +AL N Y MYN+ V+Y M ++D+A
Sbjct: 222 PQ------EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 5 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 64
+ +LGV+Y+ YD+A +A RP A+ + +G N + A+ Y R L
Sbjct: 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234
Query: 65 VSPNFEIAKNNMAIALTDLG 84
++P + NMA++ +++
Sbjct: 235 INPGYVRVMYNMAVSYSNMS 254
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%)
Query: 137 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXX 196
A NP+ A+ +LGV+Y +N D A + A+ ++P+ +Q N LG
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 197 XXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLA 232
NP Y N+ V Y + LA
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 166 ECYQM---ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVL 222
EC + AL + PN +Q +LGV+Y + P A+ +N LG
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215
Query: 223 YRDAGSISLAIDAYEQCLKIDP 244
+ A+DAY + L I+P
Sbjct: 216 LANGNRPQEALDAYNRALDINP 237
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 158 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYN 217
R KA++ Y ALSI P L+N Y+ G +P Y++A++
Sbjct: 24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83
Query: 218 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 273
LG+ D A +AYE+ ++ + N G + AM E K+ EA+R
Sbjct: 84 RLGLARFDMADYKGAKEAYEKGIEAE---GNGGSD---AMKRGLETTKRKIEEANR 133
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 28 AALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 86
AALE P A+ + ++GV+Y + +SA A R + + P+ N + L + G +
Sbjct: 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNR 221
Query: 87 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 130
+ + + Y +AL N Y MYN+ V+Y M ++D+A
Sbjct: 222 PQ------EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 5 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 64
+ +LGV+Y+ YD+A +A RP A+ + +G N + A+ Y R L
Sbjct: 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234
Query: 65 VSPNFEIAKNNMAIALTDLG 84
++P + NMA++ +++
Sbjct: 235 INPGYVRVMYNMAVSYSNMS 254
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%)
Query: 137 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXX 196
A NP+ A+ +LGV+Y +N D A + A+ ++P+ +Q N LG
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 197 XXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLA 232
NP Y N+ V Y + LA
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 166 ECYQM---ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVL 222
EC + AL + PN +Q +LGV+Y + P A+ +N LG
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215
Query: 223 YRDAGSISLAIDAYEQCLKIDP 244
+ A+DAY + L I+P
Sbjct: 216 LANGNRPQEALDAYNRALDINP 237
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 7/178 (3%)
Query: 13 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 72
SE Y+ A + KA E A Y N + + +LE A+A Y++ L +
Sbjct: 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD------ 87
Query: 73 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 132
++ A A G ++ + ++KAL D Y LG ++ + +A+
Sbjct: 88 -SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALP 146
Query: 133 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 190
+ + A N + EA G+ + LD+A+ + P + + N GV Y
Sbjct: 147 YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYA 204
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 7/196 (3%)
Query: 50 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 109
GD E A + + + + I N A L+ + ++ + +A+Y KAL +
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVN-------ELERALAFYDKALELDSS 89
Query: 110 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 169
A A Y G Y + A +E A + LG + + A+ Q
Sbjct: 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149
Query: 170 MALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSI 229
A+ + N +++ G+ +G +P +A+A+ N GV Y +
Sbjct: 150 RAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR 209
Query: 230 SLAIDAYEQCLKIDPD 245
A++ ++ + I PD
Sbjct: 210 EKALEMLDKAIDIQPD 225
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 5/153 (3%)
Query: 118 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177
G+++ + ++ A++ E + + + +LG+ Y +D+ E + +L+ P+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 178 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 237
+ LG+ Y NP LGV ++ G AID+++
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFK 134
Query: 238 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 268
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN------LGVAYGEMLKFDMAIVFYEL 136
LG G +++G +++L ADA N LG+ Y ++ K+D+A+
Sbjct: 48 LGIAYVKTGAVDRGTELLERSL------ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 137 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177
NP LGV K+ D+A++ +++AL ++PN
Sbjct: 102 VAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPN 142
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 8 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 67
LG+ Y ++ +YD A+ K A P+ +GV KN G + AI ++ L + P
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRP 141
Query: 68 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 103
N +A + +G + + ++KKA
Sbjct: 142 NEGKVHRAIAFSYEQMGRH-------EEALPHFKKA 170
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 61
Q Y + G+ +++ +Y A+ E+ + ++G+ Y G ++ ER
Sbjct: 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67
Query: 62 CLAVSPNFEIAKNNMAIALTDLG-TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 120
LA +P+ N+ +A T LG T V+++ + V K N + + LGVA
Sbjct: 68 SLADAPD------NVKVA-TVLGLTYVQVQ-KYDLAVPLLIKVAEANPINFNVRFRLGVA 119
Query: 121 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 171
+ +FD AI +++A P+ + + Y+ ++A+ ++ A
Sbjct: 120 LKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 7 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 66
N YS+L Y A+ E+A P Y++AY MG+ + A+A Y++ L +
Sbjct: 51 NRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110
Query: 67 PNFEIAKNNMAIALTDL 83
P+ E K+N+ IA L
Sbjct: 111 PDNETYKSNLKIAELKL 127
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 159 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNN 218
+N + AV Y A+ + P + N Y+ G +P Y++AY
Sbjct: 26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85
Query: 219 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 256
+G+ A+ Y++ L++DPD+ N +A
Sbjct: 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 81 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 140
T+ ++K+E + V +Y KA+ N A N AY ++ + A+ E A
Sbjct: 17 TEGNEQMKVE-NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75
Query: 141 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 188
+P ++A +G+ + +AV Y+ AL + P+ +NL +
Sbjct: 76 DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 13/155 (8%)
Query: 32 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 91
R A+ N+G + G+ A+ +E+ L ++ F K IA ++LG G
Sbjct: 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLG 63
Query: 92 DINQGVAYYKKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFY----ELAFHFN 141
+ YYKK L D + Y+LG Y + ++ AI ++ +A
Sbjct: 64 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123
Query: 142 PHCAE--ACNNLGVIYKDRDNLDKAVECYQMALSI 174
E AC +LG Y N D+A+ + L I
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 4 AYYNLGVVYSELMQYDTALGCYEKAAL------ERPMYAEAYCNMGVIYKNRGDLESAIA 57
AY NLG Y L +++TA Y+K L +R + A++ ++G Y D E AI
Sbjct: 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 110
Query: 58 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 104
+ + LA++ + + A LG G+ +Q + + +K L
Sbjct: 111 YHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 118 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177
G+++ + ++ A+V E + + E +LG+ Y +D+ E + +++ P+
Sbjct: 15 GISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPD 74
Query: 178 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 237
+ LG+ Y NP LGV + G AID+++
Sbjct: 75 NIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 238 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 268
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAYSYEQMGSHEEAL 164
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 44 VIYKNRGDLESAIACY-ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 102
V Y+++G + Y E + + ++ ++ +AL LG G +++G ++
Sbjct: 9 VYYRDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVAL-HLGIAYVKTGAVDRGTELLER 67
Query: 103 ALYYNWHYADAMYN------LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 156
++ ADA N LG+ Y ++ K+D+A+ NP LGV
Sbjct: 68 SI------ADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALD 121
Query: 157 DRDNLDKAVECYQMALSIKPN 177
+ D+A++ +++AL ++PN
Sbjct: 122 NLGRFDEAIDSFKIALGLRPN 142
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 8 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 67
LG+ Y ++ +YD A+ K A P+ +GV N G + AI ++ L + P
Sbjct: 82 LGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Query: 68 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 103
N +A + +G+ + + ++KKA
Sbjct: 142 NEGKVHRAIAYSYEQMGSH-------EEALPHFKKA 170
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 7/170 (4%)
Query: 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 61
Q Y + G+ +++ +Y A+ E+ E ++G+ Y G ++ ER
Sbjct: 8 QVYYRDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLER 67
Query: 62 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 121
+A +P+ N+ +A T LG + V K N + + LGVA
Sbjct: 68 SIADAPD------NIKVA-TVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVAL 120
Query: 122 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 171
+ +FD AI +++A P+ + + Y+ + ++A+ ++ A
Sbjct: 121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKA 170
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 118 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177
G+++ + ++ A++ E + + + +LG+ Y +D+ E + +L+ P+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 178 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 237
+ LG+ Y NP LGV + G AID+++
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 238 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 268
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN------LGVAYGEMLKFDMAIVFYEL 136
LG G +++G +++L ADA N LG+ Y ++ K+D+A+
Sbjct: 48 LGIAYVKTGAVDRGTELLERSL------ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 137 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177
NP LGV + D+A++ +++AL ++PN
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 8 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 67
LG+ Y ++ +YD A+ K A P+ +GV N G + AI ++ L + P
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Query: 68 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 103
N +A + +G + + ++KKA
Sbjct: 142 NEGKVHRAIAFSYEQMGRH-------EEALPHFKKA 170
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 61
Q Y + G+ +++ +Y A+ E+ + ++G+ Y G ++ ER
Sbjct: 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67
Query: 62 CLAVSPNFEIAKNNMAIALTDLG-TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 120
LA +P+ N+ +A T LG T V+++ + V K N + + LGVA
Sbjct: 68 SLADAPD------NVKVA-TVLGLTYVQVQ-KYDLAVPLLIKVAEANPINFNVRFRLGVA 119
Query: 121 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 171
+ +FD AI +++A P+ + + Y+ ++A+ ++ A
Sbjct: 120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 118 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177
G+++ + ++ A++ E + + + +LG+ Y +D+ E + +L+ P+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 178 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 237
+ LG+ Y NP LGV + G AID+++
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 238 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 268
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN------LGVAYGEMLKFDMAIVFYEL 136
LG G +++G +++L ADA N LG+ Y ++ K+D+A+
Sbjct: 48 LGIAYVKTGAVDRGTELLERSL------ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 137 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177
NP LGV + D+A++ +++AL ++PN
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 8 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 67
LG+ Y ++ +YD A+ K A P+ +GV N G + AI ++ L + P
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Query: 68 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 103
N +A + +G + + ++KKA
Sbjct: 142 NEGKVHRAIAFSYEQMGRH-------EEALPHFKKA 170
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 61
Q Y + G+ +++ +Y A+ E+ + ++G+ Y G ++ ER
Sbjct: 8 QVYYEDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67
Query: 62 CLAVSPNFEIAKNNMAIALTDLG-TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 120
LA +P+ N+ +A T LG T V+++ + V K N + + LGVA
Sbjct: 68 SLADAPD------NVKVA-TVLGLTYVQVQ-KYDLAVPLLIKVAEANPINFNVRFRLGVA 119
Query: 121 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 171
+ +FD AI +++A P+ + + Y+ ++A+ ++ A
Sbjct: 120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 110 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 169
YA + N G + F+ AI +Y+ A +P+ +N+ Y +L+K +E
Sbjct: 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 83
Query: 170 MALSIKPNFSQSL 182
AL IKP+ S++L
Sbjct: 84 KALEIKPDHSKAL 96
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 23/183 (12%)
Query: 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 62
P YY+ G +Y L Y A ++KA P Y + + +G + A +
Sbjct: 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNET 370
Query: 63 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 122
P A LTD GD + + Y A +G G
Sbjct: 371 KLKFPTLPEVPTFFAEILTD-------RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423
Query: 123 EML----------------KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 166
+ KF+ AI A +P +A L + + +D+A+E
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483
Query: 167 CYQ 169
++
Sbjct: 484 LFE 486
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 179 SQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 238
+Q L GV+Y G P E +N LG+ AG+ A +A++
Sbjct: 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDS 102
Query: 239 CLKIDPDSRNAGQNRLLAMNYINEGHDDKL 268
L++DP A NR +A+ Y G DKL
Sbjct: 103 VLELDPTYNYAHLNRGIALYY---GGRDKL 129
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 6 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 65
Y GV+Y L A + +A RP E + +G+ G+ ++A ++ L +
Sbjct: 47 YERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106
Query: 66 SPNFEIAKNNMAIALTDLGTKVKLEGD 92
P + A N IAL G + KL D
Sbjct: 107 DPTYNYAHLNRGIALY-YGGRDKLAQD 132
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 6/138 (4%)
Query: 152 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPT 211
GV+Y A + AL+I+P+ + N LG+ T G +PT
Sbjct: 50 GVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109
Query: 212 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 271
Y A+ N G+ G LA D + DP+ LA ++E ++ +
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169
Query: 272 H------RDWGKRFMRLY 283
H WG + Y
Sbjct: 170 HFEKSDKEQWGWNIVEFY 187
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 31/78 (39%)
Query: 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 170
A +Y GV Y + +A + A P E N LG+ N D A E +
Sbjct: 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDS 102
Query: 171 ALSIKPNFSQSLNNLGVV 188
L + P ++ + N G+
Sbjct: 103 VLELDPTYNYAHLNRGIA 120
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 110 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 169
YA + N G + F+ AI +Y+ A +P+ +N+ Y +L+K +E
Sbjct: 20 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 79
Query: 170 MALSIKPNFSQSL 182
AL IKP+ S++L
Sbjct: 80 KALEIKPDHSKAL 92
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 23/183 (12%)
Query: 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 62
P YY+ G +Y L Y A ++KA P Y + + +G + A +
Sbjct: 307 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNET 366
Query: 63 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 122
P A LTD GD + + Y A +G G
Sbjct: 367 KLKFPTLPEVPTFFAEILTD-------RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 419
Query: 123 EML----------------KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 166
+ KF+ AI A +P +A L + + +D+A+E
Sbjct: 420 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 479
Query: 167 CYQ 169
++
Sbjct: 480 LFE 482
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFH--------FNPHCAEACNNLGVIYKDRDNLD 162
A + NL V YG+ K+ A + A F+P A+ NNL ++ +++ +
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144
Query: 163 KAVECYQMALSI--------KPNFSQSLNNLGVVYTVQG 193
+ Y+ AL I PN +++ NNL Y QG
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
>pdb|4GA1|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 45/94 (47%)
Query: 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 142
LG+ + + D+ + +A + + + + Y E ++D+A + +
Sbjct: 3 LGSXRRSKADVERYIASVQGSTPSPRQKSXKGFYFAKLYXEAKEYDLAKKYICTYINVQE 62
Query: 143 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 176
+A LG++Y+ +N DKAVECY+ ++ + P
Sbjct: 63 RDPKAHRFLGLLYELEENTDKAVECYRRSVELNP 96
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 121 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177
Y E ++D+A + + +A LG++Y+ +N DKAVECY+ ++ + P
Sbjct: 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT 97
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 121 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177
Y E ++D+A + + +A LG++Y+ +N DKAVECY+ ++ + P
Sbjct: 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT 97
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFH--------FNPHCAEACNNLGVIYKDRDNLD 162
A + NL V YG+ K+ A + A F+P A+ +NL ++ +++ +
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAE 144
Query: 163 KAVECYQMALSI--------KPNFSQSLNNLGVVYTVQG 193
+ Y+ AL I PN +++ NNL Y QG
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 141 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQ 192
+P A NNL V+Y R +A + AL I+ P+ ++ L+NL ++ Q
Sbjct: 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQ 140
Query: 193 GXXXXXXXXXXXXXX--------XNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 240
G +P A+ NNL Y G A Y++ L
Sbjct: 141 GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 27 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 86
KA P EA+ +G +Y +GD+ SA C+ L N +++ N+++ L L T
Sbjct: 128 KAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTD 186
Query: 87 VKLEGD--INQGVAYYKKALYYNWHYADAMYNLGVAY-------GEMLKF-DMAIVFYEL 136
E + V K A+ + + Y LG AY G+ K A+ Y
Sbjct: 187 SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ 246
Query: 137 AFHFNPHCAEACN---NLGVIYKDRDNLDKAVECYQMALSIKPNF 178
A + + + N ++K ++ +A+E + A ++ P +
Sbjct: 247 AEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 84 GTKVKLEGDINQGVAYYKKALYY---NWHYADAMYN-LGVAYGEMLKFDMAIVFYE---- 135
G ++ GD GV++++ A+ + A+Y+ LG AY + + A+ ++
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75
Query: 136 LAFHFNPHCAEA--CNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGV 187
LA EA NLG K N D+A+ C Q L I K +++L NLG
Sbjct: 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135
Query: 188 VYTVQG 193
VY +G
Sbjct: 136 VYHAKG 141
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 45/231 (19%)
Query: 7 NLGVVYSELMQYDTALGCYEKAA-LERPM-----YAEAYCNMGVIYKNRGD--------- 51
NLG L +D A+ C ++ + R + A A N+G +Y +G
Sbjct: 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD 151
Query: 52 -----------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 100
L++A+ YE L++ + A +LG L G+ V +
Sbjct: 152 VGEFPEEVRDALQAAVDFYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAH 210
Query: 101 KKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCAEA--C 148
++ L + D A NLG AY + +F+ A +Y+ LA EA C
Sbjct: 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 270
Query: 149 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN------NLGVVYTVQG 193
+LG Y + +KA++ + L+I + + +LG YT G
Sbjct: 271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALG 321
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 8/184 (4%)
Query: 1 MQPAYYN---LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 57
MQ A N LGV L +YD AL +E+A E P EA + G + A+
Sbjct: 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE 60
Query: 58 CYERCLAVSPNF---EIAKNNMAIAL-TDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 113
+ +A +P + + + +AL + + +G + Q ++ K A N YA
Sbjct: 61 NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL 120
Query: 114 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 173
G+ Y + + D A + A E + L +Y LD+A+ Y AL
Sbjct: 121 HLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALE 179
Query: 174 IKPN 177
P
Sbjct: 180 QAPK 183
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 84 GTKVKLEGDINQGVAYYKKALYY---NWHYADAMYN-LGVAYGEMLKFDMAIVFYE---- 135
G ++ GD GV++++ A+ + A+Y+ LG AY + + A+ ++
Sbjct: 14 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 73
Query: 136 LAFHFNPHCAEA--CNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGV 187
LA EA NLG K N D+A+ C Q L I K +++L NLG
Sbjct: 74 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 133
Query: 188 VYTVQG 193
VY +G
Sbjct: 134 VYHAKG 139
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 88/231 (38%), Gaps = 45/231 (19%)
Query: 7 NLGVVYSELMQYDTALGCYEKAA-LERPM-----YAEAYCNMGVIYKNRGD--------- 51
NLG L +D A+ C ++ + R + A A N+G +Y +G
Sbjct: 90 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD 149
Query: 52 -----------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 100
L++A+ YE L++ + A +LG L G+ V +
Sbjct: 150 TGEFPEDVRNALQAAVDLYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAH 208
Query: 101 KKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCAEA--C 148
++ L + D A NLG AY + +F+ A +Y+ LA EA C
Sbjct: 209 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 268
Query: 149 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN------NLGVVYTVQG 193
+LG Y + +KA++ + L+I + +LG YT G
Sbjct: 269 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 319
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 141 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQ 192
+P A NNL V+Y R +A + AL I+ P+ ++ LNNL ++ Q
Sbjct: 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166
Query: 193 GX--------XXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 240
G +P A+ NNL Y G A Y++ L
Sbjct: 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 84 GTKVKLEGDINQGVAYYKKALYY---NWHYADAMYN-LGVAYGEMLKFDMAIVFYE---- 135
G ++ GD GV++++ A+ + A+Y+ LG AY + + A+ ++
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71
Query: 136 LAFHFNPHCAEA--CNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGV 187
LA EA NLG K N D+A+ C Q L I K +++L NLG
Sbjct: 72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 131
Query: 188 VYTVQG 193
VY +G
Sbjct: 132 VYHAKG 137
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 88/231 (38%), Gaps = 45/231 (19%)
Query: 7 NLGVVYSELMQYDTALGCYEKAA-LERPM-----YAEAYCNMGVIYKNRGD--------- 51
NLG L +D A+ C ++ + R + A A N+G +Y +G
Sbjct: 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD 147
Query: 52 -----------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 100
L++A+ YE L++ + A +LG L G+ V +
Sbjct: 148 TGEFPEDVRNALQAAVDLYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAH 206
Query: 101 KKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCAEA--C 148
++ L + D A NLG AY + +F+ A +Y+ LA EA C
Sbjct: 207 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 266
Query: 149 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN------NLGVVYTVQG 193
+LG Y + +KA++ + L+I + +LG YT G
Sbjct: 267 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 48/109 (44%)
Query: 75 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 134
++A+ + + G + +GD Q + +Y +A+ N A N Y ++L+F +A+
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 135 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 183
E P + + + KA++ YQ AL + + ++ +
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 16/134 (11%)
Query: 76 MAIALTDLGTKVKLEGDINQGVAYYKKALYY---NWHYADAMYN-LGVAYGEMLKFDMAI 131
M + L G ++ GD GVA+++ A+ + A+Y+ LG AY + ++ A+
Sbjct: 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAM 106
Query: 132 VFYE----LAFHFNPHCAEA--CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN-- 183
+++ LA N EA NLG K D+A C + L++ L+
Sbjct: 107 QYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166
Query: 184 ----NLGVVYTVQG 193
NLG VY +G
Sbjct: 167 RALYNLGNVYHAKG 180
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 89/223 (39%), Gaps = 37/223 (16%)
Query: 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 63
AY+ LG Y++ MQY K+ +R A++ N+G K G + A C ER L
Sbjct: 95 AYFYLGD-YNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153
Query: 64 AVSPNFEIAKNNMAIALTDLG----TKVKLEGDINQG-------------VAYYKKALYY 106
++ + + AL +LG K K G N G V +Y++ L
Sbjct: 154 TLARQLG-DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212
Query: 107 NWHYAD------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCAE--ACNNLGVI 154
D A NLG Y + F AI ++ +A F AE A +NLG
Sbjct: 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS 272
Query: 155 YKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTV 191
+ + A E Y+ L++ +QS +LG YT+
Sbjct: 273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL 315
>pdb|2KAT|A Chain A, Solution Structure Of Protein Bpp2914 From Bordetella
Parapertussis. Northeast Structural Genomics Consortium
Target Bpr206
Length = 115
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 6 YNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 64
+ LG Y+E Q+D AL + +AAL+ P Y+ A+ +G + +GD A +E LA
Sbjct: 23 FTLGKTYAEHEQFDAALP-HLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81
Query: 65 VS 66
+
Sbjct: 82 AA 83
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 80 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY----GEMLKFDMAIVFYE 135
L LG K E D Q Y++KA + +NLGV Y G A FY
Sbjct: 9 LVGLGAKSYKEKDFTQAKKYFEKAC--DLKENSGCFNLGVLYYQGQGVEKNLKKAASFYA 66
Query: 136 LAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 189
A N + C+ LG +Y N +KA++ Y A +K +++ +LG +Y
Sbjct: 67 KACDLNY--SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIY 120
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 37 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL-TDLGTKVKLEGDINQ 95
+AY +G+ Y RG+ E A + L + P+ A +A+ T++ K+ E
Sbjct: 51 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADE----- 105
Query: 96 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH--FNPHCAEACNNLGV 153
Y+KAL + A + N G E +++ A A P + NLG+
Sbjct: 106 ---EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 162
Query: 154 IYKDRDNLDKAVECYQMALSIKPN 177
+ +A E ++ +L + N
Sbjct: 163 VSLQMKKPAQAKEYFEKSLRLNRN 186
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 5 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 64
+ NLG Y +L YD A+ + L A + + ++Y ++ AI LA
Sbjct: 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578
Query: 65 VSPNFEIAKNNMAIALTD 82
+SPN +A + + AL +
Sbjct: 579 ISPNEIMASDLLKRALEE 596
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 109 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 168
YA A+ + G + K+D AI +Y A +NL Y +L K VE
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMS 62
Query: 169 QMALSIKPNFSQSL 182
AL +KP++S+ L
Sbjct: 63 TKALELKPDYSKVL 76
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 268 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPL 321
F DWG +S + +W DPE+ G++ D T V F++A L
Sbjct: 110 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEV--FVQADL 151
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 268 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 320
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 108 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 150
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 268 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 320
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 96 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 138
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 268 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 320
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 110 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 152
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 268 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 320
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 110 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 152
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 11/144 (7%)
Query: 37 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL-TDLGTKVKLEGDINQ 95
+AY +G+ Y RG+ E A + L + P+ A +A+ T+ K+ E
Sbjct: 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEXEPKLADE----- 92
Query: 96 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH--FNPHCAEACNNLGV 153
Y+KAL + A + N G E +++ A A P + NLG+
Sbjct: 93 ---EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149
Query: 154 IYKDRDNLDKAVECYQMALSIKPN 177
+ +A E ++ +L + N
Sbjct: 150 VSLQXKKPAQAKEYFEKSLRLNRN 173
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 72 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 131
A + AIA DLG + D + +Y KA+ + N Y E KF +
Sbjct: 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECV 62
Query: 132 VFYELAFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALS 173
F E A A+A + G ++ +++L AV+ + +LS
Sbjct: 63 QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111
>pdb|4I17|A Chain A, Crystal Structure Of A Hypothetical Protein (Bf2334) From
Bacteroides Fragilis Nctc 9343 At 1.50 A Resolution
Length = 228
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 4/117 (3%)
Query: 6 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 65
YN GV + +Y A ++ A + A AY Y++ + + IA +
Sbjct: 46 YNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDXKNNQEYIATLTEGIKA 105
Query: 66 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA---LYYNWHYADAMYNLGV 119
P + AI G K + G+I + YK A W DA+Y+LGV
Sbjct: 106 VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK-TDALYSLGV 161
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 214 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 261
EAY +G YR G A++ Y+ ++++PDS A Q R + M+ +N
Sbjct: 36 EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP-ALQARKMVMDILN 82
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 48 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 107
+G A+ CY++ + P + +N A+AL LG + QG+ Y A +
Sbjct: 16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75
Query: 108 WHYADAMYNLGVAYGEMLKFDMAIV 132
+ Y L +A G + + +V
Sbjct: 76 IR-SKLQYRLELAQGAVGSVQIPVV 99
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 32/87 (36%)
Query: 18 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 77
+DTAL Y+KA P N +Y +GD E+ + V +A
Sbjct: 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79
Query: 78 IALTDLGTKVKLEGDINQGVAYYKKAL 104
A +G E + +Y K+L
Sbjct: 80 KAYARIGNSYFKEEKYKDAIHFYNKSL 106
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 32/87 (36%)
Query: 18 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 77
+DTAL Y+KA P N +Y +GD E+ + V +A
Sbjct: 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79
Query: 78 IALTDLGTKVKLEGDINQGVAYYKKAL 104
A +G E + +Y K+L
Sbjct: 80 KAYARIGNSYFKEEKYKDAIHFYNKSL 106
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 214 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 246
E Y GVL DAG+ + +ID +E+ +++DP+
Sbjct: 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,746,706
Number of Sequences: 62578
Number of extensions: 900213
Number of successful extensions: 2588
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2228
Number of HSP's gapped (non-prelim): 280
length of query: 732
length of database: 14,973,337
effective HSP length: 106
effective length of query: 626
effective length of database: 8,340,069
effective search space: 5220883194
effective search space used: 5220883194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)